Query 017276
Match_columns 374
No_of_seqs 178 out of 804
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 07:09:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017276.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017276hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03183 acetylglucosaminyltra 100.0 4.9E-52 1.1E-56 417.0 24.1 252 57-363 75-367 (421)
2 PF02485 Branch: Core-2/I-Bran 100.0 6.1E-49 1.3E-53 370.2 9.9 225 62-315 1-244 (244)
3 KOG0799 Branching enzyme [Carb 100.0 1.2E-28 2.5E-33 250.9 17.1 226 57-306 100-350 (439)
4 PHA03054 IMV membrane protein; 59.1 15 0.00033 28.3 3.7 36 1-36 31-66 (72)
5 PF14812 PBP1_TM: Transmembran 56.9 0.68 1.5E-05 36.7 -4.0 18 1-18 53-70 (81)
6 PHA02650 hypothetical protein; 49.6 27 0.00058 27.6 3.8 27 11-37 42-68 (81)
7 cd06439 CESA_like_1 CESA_like_ 46.4 1.8E+02 0.0039 26.4 9.7 105 53-171 22-132 (251)
8 TIGR03472 HpnI hopanoid biosyn 45.5 3.2E+02 0.0069 27.2 13.4 39 59-99 40-79 (373)
9 TIGR03111 glyc2_xrt_Gpos1 puta 42.3 1.6E+02 0.0034 30.3 9.3 26 57-85 46-71 (439)
10 TIGR03469 HonB hopene-associat 42.1 3.7E+02 0.008 26.9 15.3 114 57-178 37-166 (384)
11 PF12575 DUF3753: Protein of u 41.5 40 0.00087 26.2 3.6 34 1-34 31-64 (72)
12 PRK14583 hmsR N-glycosyltransf 35.4 3.3E+02 0.0072 27.8 10.5 96 57-161 72-170 (444)
13 PHA02844 putative transmembran 33.3 69 0.0015 25.0 3.8 25 11-35 41-65 (75)
14 PF12273 RCR: Chitin synthesis 32.4 30 0.00065 29.5 1.9 8 18-25 2-9 (130)
15 PRK11204 N-glycosyltransferase 31.5 5.4E+02 0.012 25.7 13.3 107 55-174 49-163 (420)
16 PHA02975 hypothetical protein; 31.3 78 0.0017 24.4 3.7 22 14-35 40-61 (69)
17 PHA02819 hypothetical protein; 30.3 78 0.0017 24.5 3.6 25 12-36 40-64 (71)
18 PHA02692 hypothetical protein; 26.2 95 0.0021 24.0 3.4 22 11-32 38-60 (70)
19 PF04202 Mfp-3: Foot protein 3 23.3 52 0.0011 25.1 1.5 20 19-38 3-22 (71)
20 PF06718 DUF1203: Protein of u 22.9 2.5E+02 0.0054 23.8 5.8 84 63-154 16-105 (117)
21 cd02511 Beta4Glucosyltransfera 22.8 2.8E+02 0.0062 25.1 6.8 97 61-174 1-100 (229)
22 COG4698 Uncharacterized protei 20.6 1.9E+02 0.0041 26.6 4.7 22 124-145 127-149 (197)
23 PRK05529 cell division protein 20.3 61 0.0013 31.0 1.8 38 2-40 24-61 (255)
24 PF12273 RCR: Chitin synthesis 20.1 1.1E+02 0.0023 26.0 3.1 21 15-35 2-22 (130)
No 1
>PLN03183 acetylglucosaminyltransferase family protein; Provisional
Probab=100.00 E-value=4.9e-52 Score=417.03 Aligned_cols=252 Identities=18% Similarity=0.242 Sum_probs=195.7
Q ss_pred CCCCeEEEEEEec-CCCChHHHHHHHHhHhcCCCeEEEEEeCCCCccccc-------------cccCccccccccCCcce
Q 017276 57 DGPAKIAFLFLAR-RELPLDFLWGSFFEIADVENFSIFIHSAPGFVFDEL-------------TTRSKFFYGRQLSNSIQ 122 (374)
Q Consensus 57 ~~~~KiAfLilah-~~~~~~~l~~rl~~~ld~~~~~IyIHvD~k~~~~~~-------------~~~s~vf~~r~i~~rv~ 122 (374)
..+|||||||++| ++.++ ++||+++++++++.||||+|+|+...+. ...+||++ +.++..
T Consensus 75 ~~~~r~AYLI~~h~~d~~~---l~RLL~aLYhprN~y~IHlDkKS~~~er~~l~~~v~~~~~~~~~~NV~v---l~k~~~ 148 (421)
T PLN03183 75 DKLPRFAYLVSGSKGDLEK---LWRTLRALYHPRNQYVVHLDLESPAEERLELASRVENDPMFSKVGNVYM---ITKANL 148 (421)
T ss_pred CCCCeEEEEEEecCCcHHH---HHHHHHHhcCCCceEEEEecCCCChHHHHHHHHHhhccchhhccCcEEE---Eeccee
Confidence 3579999999999 66789 9999999999999999999999853210 12456765 567888
Q ss_pred eecCCccHHHHHHHHHHHHhcC-CCCCEEEEecCCcccCCChHH-HHHHHhcCC-CCceeccccC--C-cCcccCC----
Q 017276 123 VAWGESSMIAAERLLLEAALED-PANQRFVLLSDSCVPIYNFSY-VYKYLMASP-RSFVDSFLDR--K-ESRYNPK---- 192 (374)
Q Consensus 123 V~WG~~SlV~A~l~Ll~~AL~d-~~~~yfiLLSgsd~PL~s~~~-I~~~L~~~~-~sFI~~~~~~--~-~~Ry~~~---- 192 (374)
|.|||+|||+|||++|+.+|+. .+|||||||||+||||+++++ |+.|+..+. +|||++..+. + ..|+++.
T Consensus 149 V~WGG~S~V~AtL~~m~~LL~~~~~WDyfinLSGsDyPLkTqdelI~~F~~~nr~~NFI~~~s~~~wk~~~r~~~~i~~p 228 (421)
T PLN03183 149 VTYRGPTMVANTLHACAILLKRSKDWDWFINLSASDYPLVTQDDLIHTFSTLDRNLNFIEHTSQLGWKEEKRAMPLIIDP 228 (421)
T ss_pred eccCChHHHHHHHHHHHHHHhhCCCCCEEEEccCCcccccCHHHHHHHHHhCCCCceeeecccccccchhhhcceEEecC
Confidence 9999999999999999999984 799999999999999999999 577877776 8999975421 1 1122110
Q ss_pred ----------C----CCCCC-CCcccccCceeeecHHHHHHhhcccchhHHHHhhhcCCCCCcccccchhhhcccccccc
Q 017276 193 ----------M----SPTIP-KGKWRKGSQWITLIRRHAEVIVDDEIIFPVFKKCCKRRPPLDARKGKMNMKLQKQHNCI 257 (374)
Q Consensus 193 ----------m----~p~ip-~~~~~~GSqW~sLtR~~ae~Il~~~~i~~~f~~~c~~~~~~~~~~~~~~~~~~~~~t~~ 257 (374)
+ .+.+| ..++++||||++|||++|+||+...+-.+.. +..|+.++++
T Consensus 229 gl~~~~ks~~~~~~~~R~~P~~~~lf~GS~W~sLSR~fvey~l~~~dnlpr~------------------ll~y~~~t~~ 290 (421)
T PLN03183 229 GLYSTNKSDIYWVTPRRSLPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRT------------------LLMYYTNFVS 290 (421)
T ss_pred ceeecccchhhhhhhhccCCccccccCCCceEEecHHHHHHHHhcccchHHH------------------HHHHHhcCCC
Confidence 0 01235 4789999999999999999999743211111 1246677999
Q ss_pred cChhHHHHHHhccC-CcCccccCCceEEecCCCCCCCCCCCCcccccCCCChHHHHHHHhccccccccccceeeeecCCc
Q 017276 258 PDEHYVQTLLAMSE-LEGELERRTLTYTQWNLSTTGNQNWHPLTFSYANAGPQQIKEIKSINHVYYETEFRTEWCRSNSI 336 (374)
Q Consensus 258 PDE~ffqTLL~ns~-~~~~i~~~~lryi~W~~~~~~~~~~hP~~~~~~D~~~~~l~~i~~~~~~~~~~~~~~~~c~~~~~ 336 (374)
|||+||||+++|++ |+++++|+++|||+|+++ .+.||++|+.+|+ ++|.+
T Consensus 291 pdE~fFqTVl~NS~~f~~t~vn~nLRyI~W~~~----~~~~P~~l~~~D~-----~~l~~-------------------- 341 (421)
T PLN03183 291 SPEGYFHTVICNVPEFAKTAVNHDLHYISWDNP----PKQHPHTLSLNDT-----EKMIA-------------------- 341 (421)
T ss_pred CchHHHHHHHhhcccccccccCCceeEEecCCC----CCCCCcccCHHHH-----HHHHh--------------------
Confidence 99999999999997 999999999999999975 2459999999998 66666
Q ss_pred CCCCceEeeCCCchh-HHHHHhcccccc
Q 017276 337 IVPCFLFARKFSRGA-AMRLLSEGIVGT 363 (374)
Q Consensus 337 ~~~~~lFARKFd~~~-~~~ll~~~~~~~ 363 (374)
+..+||||||.+. ...-+|+.++|.
T Consensus 342 --S~~lFARKFd~d~~vl~~Id~~ll~r 367 (421)
T PLN03183 342 --SGAAFARKFRRDDPVLDKIDKELLGR 367 (421)
T ss_pred --CCCccccCCCCChHHHHHHHHHHhCC
Confidence 3569999999872 223445555543
No 2
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=100.00 E-value=6.1e-49 Score=370.23 Aligned_cols=225 Identities=29% Similarity=0.510 Sum_probs=151.2
Q ss_pred EEEEEEecC-CCChHHHHHHHHhHhcCCCeEEEEEeCCCCcc---ccc----cccCccccccccCCcceeecCCccHHHH
Q 017276 62 IAFLFLARR-ELPLDFLWGSFFEIADVENFSIFIHSAPGFVF---DEL----TTRSKFFYGRQLSNSIQVAWGESSMIAA 133 (374)
Q Consensus 62 iAfLilah~-~~~~~~l~~rl~~~ld~~~~~IyIHvD~k~~~---~~~----~~~s~vf~~r~i~~rv~V~WG~~SlV~A 133 (374)
|||||+||+ ++++ ++++++.++++++.+|||+|+|+.. +.. ...+++++ +++|++|.|||+|||+|
T Consensus 1 iAylil~h~~~~~~---~~~l~~~l~~~~~~f~iHiD~k~~~~~~~~~~~~~~~~~nv~~---v~~r~~v~WG~~S~v~A 74 (244)
T PF02485_consen 1 IAYLILAHKNDPEQ---LERLLRLLYHPDNDFYIHIDKKSPDYFYEEIKKLISCFPNVHF---VPKRVDVRWGGFSLVEA 74 (244)
T ss_dssp EEEEEEESS--HHH---HHHHHHHH--TTSEEEEEE-TTS-HHHHHHHHHHHCT-TTEEE----SS-----TTSHHHHHH
T ss_pred CEEEEEecCCCHHH---HHHHHHHhcCCCCEEEEEEcCCCChHHHHHHHHhcccCCceee---cccccccccCCccHHHH
Confidence 799999988 6678 8999999988899999999999641 111 12345544 78899999999999999
Q ss_pred HHHHHHHHhc-CCCCCEEEEecCCcccCCChHHHHHHHhcC-C-CCceeccccCCc---CcccCC----CCCCCCCCccc
Q 017276 134 ERLLLEAALE-DPANQRFVLLSDSCVPIYNFSYVYKYLMAS-P-RSFVDSFLDRKE---SRYNPK----MSPTIPKGKWR 203 (374)
Q Consensus 134 ~l~Ll~~AL~-d~~~~yfiLLSgsd~PL~s~~~I~~~L~~~-~-~sFI~~~~~~~~---~Ry~~~----m~p~ip~~~~~ 203 (374)
|+.||++|++ +++|+|||||||+|+||+++++|++||+.+ + .+|++++..... .||.+. +.+..+..++|
T Consensus 75 ~l~ll~~al~~~~~~~y~~llSg~D~Pl~s~~~i~~~l~~~~~~~~f~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 154 (244)
T PF02485_consen 75 TLNLLREALKRDGDWDYFILLSGQDYPLKSNEEIHEFLESNNGDNNFIESFSDEDPRESGRYNPRIYDPFRPFFRKRTLY 154 (244)
T ss_dssp HHHHHHHHHHH-S---EEEEEETTEEESS-HHHHHHHHHHTTT--B---BEE--GGGG-HHHHEEEETTEEEEEEEE--E
T ss_pred HHHHHHHHHhcCCCCcEEEEcccccccccchHHHHHHHHhcCCCCcceecccccccchhhcceeeeeeeccccccccccc
Confidence 9999999999 789999999999999999999999999998 4 788987654321 455433 22223334899
Q ss_pred ccCceeeecHHHHHHhhcccchhHHHHhhhcCCCCCcccccchhhhcccccccccChhHHHHHHhcc-CCcCccccCCce
Q 017276 204 KGSQWITLIRRHAEVIVDDEIIFPVFKKCCKRRPPLDARKGKMNMKLQKQHNCIPDEHYVQTLLAMS-ELEGELERRTLT 282 (374)
Q Consensus 204 ~GSqW~sLtR~~ae~Il~~~~i~~~f~~~c~~~~~~~~~~~~~~~~~~~~~t~~PDE~ffqTLL~ns-~~~~~i~~~~lr 282 (374)
+|||||+|||++|++|+++....+.++++| ++++||||+||||||.|+ .+++++.++++|
T Consensus 155 ~GSqW~~Ltr~~v~~il~~~~~~~~~~~~~-------------------~~~~~pDE~ffqTll~n~~~~~~~~~~~~~r 215 (244)
T PF02485_consen 155 KGSQWFSLTRDFVEYILDDPNYRPKLKKYF-------------------RFSLCPDESFFQTLLNNSGHFKDTIVNRNLR 215 (244)
T ss_dssp EE-S--EEEHHHHHHHHH-HHHHHHHHHHT--------------------TSSSGGGTHHHHH--SSGGG-B-TTTSSSE
T ss_pred ccceeeEeeHHHHHHhhhhHHHHHHHHHhh-------------------cCccCcchhhHHHhhcccchhcccccCCCEE
Confidence 999999999999999998777777776533 468999999999999999 688999999999
Q ss_pred EEecCCCCCCCCCCCCcccccCCCChHHHHHHH
Q 017276 283 YTQWNLSTTGNQNWHPLTFSYANAGPQQIKEIK 315 (374)
Q Consensus 283 yi~W~~~~~~~~~~hP~~~~~~D~~~~~l~~i~ 315 (374)
||+|+.+ +++||++++..+++++.|+.|+
T Consensus 216 ~i~W~~~----~~~~p~~~~~~~~~~~d~~~~~ 244 (244)
T PF02485_consen 216 YIDWSRR----GGCHPKTLTICDLGPEDLPWLK 244 (244)
T ss_dssp EE-BTGT-----SS---SSEEEE--GGGHHHH-
T ss_pred EEECCCC----CCCCCCeeeeeeeCHHHHHhhC
Confidence 9999933 2799999999999999998775
No 3
>KOG0799 consensus Branching enzyme [Carbohydrate transport and metabolism]
Probab=99.96 E-value=1.2e-28 Score=250.87 Aligned_cols=226 Identities=19% Similarity=0.207 Sum_probs=172.0
Q ss_pred CCCCeEEEEEEecCCCChHHHHHHHHhHhcCCCeEEEEEeCCCCcccc---ccccCccccccc-cCCcceeecCCccHHH
Q 017276 57 DGPAKIAFLFLARRELPLDFLWGSFFEIADVENFSIFIHSAPGFVFDE---LTTRSKFFYGRQ-LSNSIQVAWGESSMIA 132 (374)
Q Consensus 57 ~~~~KiAfLilah~~~~~~~l~~rl~~~ld~~~~~IyIHvD~k~~~~~---~~~~s~vf~~r~-i~~rv~V~WG~~SlV~ 132 (374)
..+.-+||+.++|++.++ +++++++++++++.++||+|.++.... ...-+++|-|.. ++++..|.|||.|+++
T Consensus 100 ~~~~~~a~~~~v~kd~~~---verll~aiYhPqN~ycihvD~~s~~~fk~~~~~L~~cf~NV~v~~k~~~v~~~G~s~l~ 176 (439)
T KOG0799|consen 100 LKPFPAAFLRVVYKDYEQ---VERLLQAIYHPQNVYCIHVDAKSPPEFRVAMQQLASCFPNVIVLPKRESVTYGGHSILA 176 (439)
T ss_pred ccccceEEEEeecccHHH---HHHHHHHHhCCcCcceEEECCCCCHHHHHHHHHHHhcCCceEEeccccceecCCchhhH
Confidence 334467888889999999 999999999999999999999985321 112344444433 4568999999999999
Q ss_pred HHHHHHHHHhcCC-CCCEEEEecCCcccCCChHHHHHHHhcC-CCCceeccccC--CcCc---ccC-----------CCC
Q 017276 133 AERLLLEAALEDP-ANQRFVLLSDSCVPIYNFSYVYKYLMAS-PRSFVDSFLDR--KESR---YNP-----------KMS 194 (374)
Q Consensus 133 A~l~Ll~~AL~d~-~~~yfiLLSgsd~PL~s~~~I~~~L~~~-~~sFI~~~~~~--~~~R---y~~-----------~m~ 194 (374)
|.++||+.+++.+ +|+||++|||+|+||+|+.||.+.|+.. +.|||++.... +..| +.. .++
T Consensus 177 a~l~c~~~Ll~~~~~W~yfinLs~~D~PlkT~~elv~i~~~L~g~N~i~~~~~~~~~~~~~~k~~~~~~~~~~~~s~~~~ 256 (439)
T KOG0799|consen 177 AHLNCLADLLKLSGDWDYFINLSNSDYPLKTNDELVRIFKILRGANFVEHTSEIGWKLNRKAKWDIIDLKYFRNKSPLPW 256 (439)
T ss_pred HHHHHHHHHHhcCCCCceeeeccCCCcccCCHHHHHHHHHHcCCcccccCcccccHHHhcccCCcccccchheecCCCcc
Confidence 9999999999864 7999999999999999999999999884 59999863321 1111 110 112
Q ss_pred CCCC-CCcccccCceeeecHHHHHHhhcccchhHHHHhhhcCCCCCcccccchhhhcccccccccChhHHHHHHhccCCc
Q 017276 195 PTIP-KGKWRKGSQWITLIRRHAEVIVDDEIIFPVFKKCCKRRPPLDARKGKMNMKLQKQHNCIPDEHYVQTLLAMSELE 273 (374)
Q Consensus 195 p~ip-~~~~~~GSqW~sLtR~~ae~Il~~~~i~~~f~~~c~~~~~~~~~~~~~~~~~~~~~t~~PDE~ffqTLL~ns~~~ 273 (374)
+.+| ..++++||.|++|+|.+|+|++....... + .+++++++.|||+||+||++|+ ++
T Consensus 257 ~~lp~~~ki~~Gs~~~~LsR~fv~y~i~~~~~~~-l-------------------l~~~~~t~~~dE~f~~Tl~~n~-~~ 315 (439)
T KOG0799|consen 257 VILPTALKLFKGSAWVSLSRAFVEYLISGNLPRT-L-------------------LMYYNNTYSPDEGFFHTLQCNP-FG 315 (439)
T ss_pred ccCCCceEEEecceeEEEeHHHHHHHhcCccHHH-H-------------------HHHHhCccCcchhhhHhhhccc-cC
Confidence 2345 47899999999999999999998743322 2 2467789999999999999999 55
Q ss_pred CccccCC--ceEEecCCCCCCCCCCCCcccccCCC
Q 017276 274 GELERRT--LTYTQWNLSTTGNQNWHPLTFSYANA 306 (374)
Q Consensus 274 ~~i~~~~--lryi~W~~~~~~~~~~hP~~~~~~D~ 306 (374)
..-...+ +||+.|+.......+.||..++..|.
T Consensus 316 ~~g~~~~~~lr~~~W~~~~~~~~~~~c~~~~~~~~ 350 (439)
T KOG0799|consen 316 MPGVFNDECLRYTNWDRKDVDPPKQHCHSLTVRDF 350 (439)
T ss_pred CCCcccchhhcceecccccccccccCCcccccccc
Confidence 5555666 99999997432123567877777765
No 4
>PHA03054 IMV membrane protein; Provisional
Probab=59.11 E-value=15 Score=28.34 Aligned_cols=36 Identities=6% Similarity=0.201 Sum_probs=23.0
Q ss_pred CCCCCCCCCCcceeeehhHHHHHHHHHHHHHHHHHh
Q 017276 1 MTKKAAPKVGRHVLWFSWKLVTFFCIAFSLVALFRL 36 (374)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (374)
||.|.++....-.-|..|.++++++++..+++++..
T Consensus 31 l~dk~~~~~~~~~~~~~~~~~ii~l~~v~~~~l~~f 66 (72)
T PHA03054 31 LSDEKTVTSTNNTGCWGWYWLIIIFFIVLILLLLIY 66 (72)
T ss_pred HcCCCCcccccccCCchHHHHHHHHHHHHHHHHHHH
Confidence 455544444345668888888888776666666554
No 5
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=56.89 E-value=0.68 Score=36.74 Aligned_cols=18 Identities=17% Similarity=0.390 Sum_probs=0.0
Q ss_pred CCCCCCCCCCcceeeehh
Q 017276 1 MTKKAAPKVGRHVLWFSW 18 (374)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (374)
|++|....+|+.+-||.|
T Consensus 53 m~rK~k~r~rkKrrwlwL 70 (81)
T PF14812_consen 53 MPRKGKKRPRKKRRWLWL 70 (81)
T ss_dssp ------------------
T ss_pred cccccccCccccchhHHH
Confidence 677744336555555544
No 6
>PHA02650 hypothetical protein; Provisional
Probab=49.57 E-value=27 Score=27.57 Aligned_cols=27 Identities=30% Similarity=0.635 Sum_probs=20.6
Q ss_pred cceeeehhHHHHHHHHHHHHHHHHHhh
Q 017276 11 RHVLWFSWKLVTFFCIAFSLVALFRLH 37 (374)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (374)
.-.-|+.|.++++++++.++++++..+
T Consensus 42 ~~~~~~~~~~~ii~i~~v~i~~l~~fl 68 (81)
T PHA02650 42 KSVSWFNGQNFIFLIFSLIIVALFSFF 68 (81)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHHHH
Confidence 446789999998888887777776643
No 7
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=46.43 E-value=1.8e+02 Score=26.38 Aligned_cols=105 Identities=10% Similarity=-0.049 Sum_probs=58.7
Q ss_pred CCCCCCCCeEEEEEEecCCCCh-HHHHHHHHhHhc-CCCeEEEEEeCCCCccccc----cccCccccccccCCcceeecC
Q 017276 53 RIHYDGPAKIAFLFLARRELPL-DFLWGSFFEIAD-VENFSIFIHSAPGFVFDEL----TTRSKFFYGRQLSNSIQVAWG 126 (374)
Q Consensus 53 ~~~~~~~~KiAfLilah~~~~~-~~l~~rl~~~ld-~~~~~IyIHvD~k~~~~~~----~~~s~vf~~r~i~~rv~V~WG 126 (374)
..+....++++.+|.+|++... +..++.+++... ...+.|+|..|...+-... ....++.. +.. . .
T Consensus 22 ~~~~~~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~v~~---i~~---~--~ 93 (251)
T cd06439 22 LPDPAYLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADKGVKL---LRF---P--E 93 (251)
T ss_pred CCCCCCCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhhCcEEE---EEc---C--C
Confidence 3455677899999999998754 333444443321 1227888888876531110 00001211 111 1 1
Q ss_pred CccHHHHHHHHHHHHhcCCCCCEEEEecCCcccCCChHHHHHHHh
Q 017276 127 ESSMIAAERLLLEAALEDPANQRFVLLSDSCVPIYNFSYVYKYLM 171 (374)
Q Consensus 127 ~~SlV~A~l~Ll~~AL~d~~~~yfiLLSgsd~PL~s~~~I~~~L~ 171 (374)
..+...|-..+++.| ..++++++-+.|+|- .+.+.+.+.
T Consensus 94 ~~g~~~a~n~gi~~a----~~d~i~~lD~D~~~~--~~~l~~l~~ 132 (251)
T cd06439 94 RRGKAAALNRALALA----TGEIVVFTDANALLD--PDALRLLVR 132 (251)
T ss_pred CCChHHHHHHHHHHc----CCCEEEEEccccCcC--HHHHHHHHH
Confidence 234556666666654 248999999999985 455555543
No 8
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=45.53 E-value=3.2e+02 Score=27.18 Aligned_cols=39 Identities=15% Similarity=0.123 Sum_probs=26.2
Q ss_pred CCeEEEEEEecCCCCh-HHHHHHHHhHhcCCCeEEEEEeCCC
Q 017276 59 PAKIAFLFLARRELPL-DFLWGSFFEIADVENFSIFIHSAPG 99 (374)
Q Consensus 59 ~~KiAfLilah~~~~~-~~l~~rl~~~ld~~~~~IyIHvD~k 99 (374)
.|++..+|-+|+..+. ++.++.+.+. +.+.+.|.| +|..
T Consensus 40 ~p~VSViiP~~nee~~l~~~L~Sl~~q-~Yp~~EIiv-vdd~ 79 (373)
T TIGR03472 40 WPPVSVLKPLHGDEPELYENLASFCRQ-DYPGFQMLF-GVQD 79 (373)
T ss_pred CCCeEEEEECCCCChhHHHHHHHHHhc-CCCCeEEEE-EeCC
Confidence 5779999999998754 4455555543 346688877 4443
No 9
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=42.28 E-value=1.6e+02 Score=30.27 Aligned_cols=26 Identities=8% Similarity=-0.064 Sum_probs=18.9
Q ss_pred CCCCeEEEEEEecCCCChHHHHHHHHhHh
Q 017276 57 DGPAKIAFLFLARRELPLDFLWGSFFEIA 85 (374)
Q Consensus 57 ~~~~KiAfLilah~~~~~~~l~~rl~~~l 85 (374)
...|+++.+|-+|+..+. +.+.++++
T Consensus 46 ~~~P~vsVIIP~yNe~~~---l~~~l~sl 71 (439)
T TIGR03111 46 GKLPDITIIIPVYNSEDT---LFNCIESI 71 (439)
T ss_pred CCCCCEEEEEEeCCChHH---HHHHHHHH
Confidence 335789999999998765 55555554
No 10
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=42.06 E-value=3.7e+02 Score=26.90 Aligned_cols=114 Identities=11% Similarity=0.055 Sum_probs=58.1
Q ss_pred CCCCeEEEEEEecCCCChHHHHHHHHhHhc---CC-CeEEEEEeCCCCcc-----cccc-ccC---ccccccccC-Ccce
Q 017276 57 DGPAKIAFLFLARRELPLDFLWGSFFEIAD---VE-NFSIFIHSAPGFVF-----DELT-TRS---KFFYGRQLS-NSIQ 122 (374)
Q Consensus 57 ~~~~KiAfLilah~~~~~~~l~~rl~~~ld---~~-~~~IyIHvD~k~~~-----~~~~-~~s---~vf~~r~i~-~rv~ 122 (374)
+..|++..+|-++++.+. +.+.++++. .+ .+.|.|=-|...+- ++.. ..+ .+.. +. +..+
T Consensus 37 ~~~p~VSVIIpa~Ne~~~---L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~v---i~~~~~~ 110 (384)
T TIGR03469 37 EAWPAVVAVVPARNEADV---IGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAYGRGDRLTV---VSGQPLP 110 (384)
T ss_pred CCCCCEEEEEecCCcHhH---HHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcCCCCcEEE---ecCCCCC
Confidence 456789999999998765 555555542 22 46665543433221 0000 000 1211 21 1122
Q ss_pred eecCCccHHHHHHHHHHHHhcC-CCCCEEEEecCCcccCCCh-HHHHHHHhcCCCCce
Q 017276 123 VAWGESSMIAAERLLLEAALED-PANQRFVLLSDSCVPIYNF-SYVYKYLMASPRSFV 178 (374)
Q Consensus 123 V~WG~~SlV~A~l~Ll~~AL~d-~~~~yfiLLSgsd~PL~s~-~~I~~~L~~~~~sFI 178 (374)
..|+| ...|.-.+++.|-+. ++.++++++-..+.+-.+. .++.+.+.+++...+
T Consensus 111 ~g~~G--k~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~v 166 (384)
T TIGR03469 111 PGWSG--KLWAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARLVARARAEGLDLV 166 (384)
T ss_pred CCCcc--hHHHHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCEE
Confidence 34443 456666777777543 3468888887777753222 334444444444444
No 11
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=41.52 E-value=40 Score=26.21 Aligned_cols=34 Identities=21% Similarity=0.355 Sum_probs=21.9
Q ss_pred CCCCCCCCCCcceeeehhHHHHHHHHHHHHHHHH
Q 017276 1 MTKKAAPKVGRHVLWFSWKLVTFFCIAFSLVALF 34 (374)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (374)
||-|.+...+...-|+.|.+++...++..+++++
T Consensus 31 ltdk~~~~~~~~~~~~~~~~~ii~ii~v~ii~~l 64 (72)
T PF12575_consen 31 LTDKKKLKNNKNNKNFNWIILIISIIFVLIIVLL 64 (72)
T ss_pred HcCCccccccCCCCcchHHHHHHHHHHHHHHHHH
Confidence 4556565667788889888776666554444444
No 12
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=35.38 E-value=3.3e+02 Score=27.81 Aligned_cols=96 Identities=7% Similarity=-0.002 Sum_probs=49.8
Q ss_pred CCCCeEEEEEEecCCCC-hHHHHHHHHhHhcCCCeEEEEEeCCCCccccccccCccccccccCCcceeec--CCccHHHH
Q 017276 57 DGPAKIAFLFLARRELP-LDFLWGSFFEIADVENFSIFIHSAPGFVFDELTTRSKFFYGRQLSNSIQVAW--GESSMIAA 133 (374)
Q Consensus 57 ~~~~KiAfLilah~~~~-~~~l~~rl~~~ld~~~~~IyIHvD~k~~~~~~~~~s~vf~~r~i~~rv~V~W--G~~SlV~A 133 (374)
.+.|+++.+|-+|++.. .+..++.+.+. +.++++|+|=-|...+-.... ...... . ..++.+.. +.-+.-
T Consensus 72 ~~~p~vsViIP~yNE~~~i~~~l~sll~q-~yp~~eIivVdDgs~D~t~~~-~~~~~~--~-~~~v~vv~~~~n~Gka-- 144 (444)
T PRK14583 72 KGHPLVSILVPCFNEGLNARETIHAALAQ-TYTNIEVIAINDGSSDDTAQV-LDALLA--E-DPRLRVIHLAHNQGKA-- 144 (444)
T ss_pred CCCCcEEEEEEeCCCHHHHHHHHHHHHcC-CCCCeEEEEEECCCCccHHHH-HHHHHH--h-CCCEEEEEeCCCCCHH--
Confidence 34578999999999875 34445555443 345788877555443211000 000000 0 01222222 112222
Q ss_pred HHHHHHHHhcCCCCCEEEEecCCcccCC
Q 017276 134 ERLLLEAALEDPANQRFVLLSDSCVPIY 161 (374)
Q Consensus 134 ~l~Ll~~AL~d~~~~yfiLLSgsd~PL~ 161 (374)
..+..+++..+.++++.+-+.+.|=.
T Consensus 145 --~AlN~gl~~a~~d~iv~lDAD~~~~~ 170 (444)
T PRK14583 145 --IALRMGAAAARSEYLVCIDGDALLDK 170 (444)
T ss_pred --HHHHHHHHhCCCCEEEEECCCCCcCH
Confidence 23444444457899999999998743
No 13
>PHA02844 putative transmembrane protein; Provisional
Probab=33.32 E-value=69 Score=25.02 Aligned_cols=25 Identities=16% Similarity=0.066 Sum_probs=15.0
Q ss_pred cceeeehhHHHHHHHHHHHHHHHHH
Q 017276 11 RHVLWFSWKLVTFFCIAFSLVALFR 35 (374)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (374)
.-+-|..|.++++++++..+++++.
T Consensus 41 ~~~~~~~~~~~ii~i~~v~~~~~~~ 65 (75)
T PHA02844 41 NNVCSSSTKIWILTIIFVVFATFLT 65 (75)
T ss_pred cccCChhHHHHHHHHHHHHHHHHHH
Confidence 3456677777776665555544444
No 14
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=32.41 E-value=30 Score=29.50 Aligned_cols=8 Identities=25% Similarity=0.754 Sum_probs=3.1
Q ss_pred hHHHHHHH
Q 017276 18 WKLVTFFC 25 (374)
Q Consensus 18 ~~~~~~~~ 25 (374)
|-|+++|+
T Consensus 2 W~l~~iii 9 (130)
T PF12273_consen 2 WVLFAIII 9 (130)
T ss_pred eeeHHHHH
Confidence 33443333
No 15
>PRK11204 N-glycosyltransferase; Provisional
Probab=31.51 E-value=5.4e+02 Score=25.71 Aligned_cols=107 Identities=8% Similarity=0.075 Sum_probs=53.9
Q ss_pred CCCCCCeEEEEEEecCCCCh-HHHHHHHHhHhcCCCeEEEEEeCCCCcccc-----cc-ccCccccccccCCcceeecCC
Q 017276 55 HYDGPAKIAFLFLARRELPL-DFLWGSFFEIADVENFSIFIHSAPGFVFDE-----LT-TRSKFFYGRQLSNSIQVAWGE 127 (374)
Q Consensus 55 ~~~~~~KiAfLilah~~~~~-~~l~~rl~~~ld~~~~~IyIHvD~k~~~~~-----~~-~~s~vf~~r~i~~rv~V~WG~ 127 (374)
+....|+++.+|-+|++.+. ...++.+.+. +.+.+.|.|=-|...+-.. .. ..+++.. +.. -..+|
T Consensus 49 ~~~~~p~vsViIp~yne~~~i~~~l~sl~~q-~yp~~eiiVvdD~s~d~t~~~l~~~~~~~~~v~~---i~~---~~n~G 121 (420)
T PRK11204 49 QLKEYPGVSILVPCYNEGENVEETISHLLAL-RYPNYEVIAINDGSSDNTGEILDRLAAQIPRLRV---IHL---AENQG 121 (420)
T ss_pred CcCCCCCEEEEEecCCCHHHHHHHHHHHHhC-CCCCeEEEEEECCCCccHHHHHHHHHHhCCcEEE---EEc---CCCCC
Confidence 34556899999999998754 3444444432 3456788775444332100 00 1111211 110 11122
Q ss_pred ccHHHHHHHHHHHHhcCCCCCEEEEecCCcccCCCh-HHHHHHHhcCC
Q 017276 128 SSMIAAERLLLEAALEDPANQRFVLLSDSCVPIYNF-SYVYKYLMASP 174 (374)
Q Consensus 128 ~SlV~A~l~Ll~~AL~d~~~~yfiLLSgsd~PL~s~-~~I~~~L~~~~ 174 (374)
...| +..+++..+.++++.+-..++|-.+. .++.+.+++++
T Consensus 122 --ka~a----ln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~ 163 (420)
T PRK11204 122 --KANA----LNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHFLHNP 163 (420)
T ss_pred --HHHH----HHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHHHhCC
Confidence 3333 33344434679999998888774331 33445554443
No 16
>PHA02975 hypothetical protein; Provisional
Probab=31.33 E-value=78 Score=24.35 Aligned_cols=22 Identities=18% Similarity=0.183 Sum_probs=13.7
Q ss_pred eeehhHHHHHHHHHHHHHHHHH
Q 017276 14 LWFSWKLVTFFCIAFSLVALFR 35 (374)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~ 35 (374)
.+..|.++++++++..+++++.
T Consensus 40 ~~~~~~~~ii~i~~v~~~~~~~ 61 (69)
T PHA02975 40 KSSLSIILIIFIIFITCIAVFT 61 (69)
T ss_pred CCchHHHHHHHHHHHHHHHHHH
Confidence 6677777777665555555444
No 17
>PHA02819 hypothetical protein; Provisional
Probab=30.32 E-value=78 Score=24.47 Aligned_cols=25 Identities=12% Similarity=0.106 Sum_probs=17.2
Q ss_pred ceeeehhHHHHHHHHHHHHHHHHHh
Q 017276 12 HVLWFSWKLVTFFCIAFSLVALFRL 36 (374)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (374)
-.-|..|.++++++++..+++++..
T Consensus 40 ~~~~~~~~~~ii~l~~~~~~~~~~f 64 (71)
T PHA02819 40 TKKSFLRYYLIIGLVTIVFVIIFII 64 (71)
T ss_pred ccCChhHHHHHHHHHHHHHHHHHHH
Confidence 4567888888877766666666553
No 18
>PHA02692 hypothetical protein; Provisional
Probab=26.20 E-value=95 Score=23.98 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=12.0
Q ss_pred cceeeehhHHHHHH-HHHHHHHH
Q 017276 11 RHVLWFSWKLVTFF-CIAFSLVA 32 (374)
Q Consensus 11 ~~~~~~~~~~~~~~-~~~~~~~~ 32 (374)
+..-+..|..++++ .++..+++
T Consensus 38 ~~~~~~~~~~~ii~~~~~~~~~v 60 (70)
T PHA02692 38 DRSKGVPWTTVFLIGLIAAAIGV 60 (70)
T ss_pred cccCCcchHHHHHHHHHHHHHHH
Confidence 44556777777666 44333333
No 19
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=23.28 E-value=52 Score=25.12 Aligned_cols=20 Identities=20% Similarity=0.310 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 017276 19 KLVTFFCIAFSLVALFRLHL 38 (374)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~ 38 (374)
.|.++.+++|+|.+++.+|+
T Consensus 3 n~Si~VLlaLvLIg~fAVqS 22 (71)
T PF04202_consen 3 NLSIAVLLALVLIGSFAVQS 22 (71)
T ss_pred chhHHHHHHHHHHhhheeee
Confidence 36678889999999999985
No 20
>PF06718 DUF1203: Protein of unknown function (DUF1203); InterPro: IPR009593 This family consists of several hypothetical bacterial proteins of around 155 residues in length. Family members are present in Rhizobium, Agrobacterium and Streptomyces species.
Probab=22.89 E-value=2.5e+02 Score=23.82 Aligned_cols=84 Identities=20% Similarity=0.233 Sum_probs=49.3
Q ss_pred EEEEEecCCCChHHHHHHHHhHhcCCCeEEEEEeCCCCccccccccCccc-ccccc-----CCcceeecCCccHHHHHHH
Q 017276 63 AFLFLARRELPLDFLWGSFFEIADVENFSIFIHSAPGFVFDELTTRSKFF-YGRQL-----SNSIQVAWGESSMIAAERL 136 (374)
Q Consensus 63 AfLilah~~~~~~~l~~rl~~~ld~~~~~IyIHvD~k~~~~~~~~~s~vf-~~r~i-----~~rv~V~WG~~SlV~A~l~ 136 (374)
.+|++.|..++. ..-+.+..-||||...-...........++ -++.+ ...-.+.+|....-...-.
T Consensus 16 ~~lLlsy~p~~~--------~~PY~e~gpIFvha~~c~~~~~~~~~P~~l~~~r~~~lR~Y~a~~~iv~g~v~~g~~~~~ 87 (117)
T PF06718_consen 16 ELLLLSYRPFPA--------PSPYRETGPIFVHAEACEAYDGVDELPPVLYRGRLLSLRAYDADGRIVTGRVVEGADIEA 87 (117)
T ss_pred eEEEEecCCCCC--------CCCCCCCCCEEEecCcccCCCCCCCCChhhccCCCeEEEeEcCCCCEEeeeEEcchhHHH
Confidence 466778876643 112346677999999743222211122222 22221 1222334788777777777
Q ss_pred HHHHHhcCCCCCEEEEec
Q 017276 137 LLEAALEDPANQRFVLLS 154 (374)
Q Consensus 137 Ll~~AL~d~~~~yfiLLS 154 (374)
.++++++||+.+|+|.=|
T Consensus 88 ~l~~~fa~p~VayVHvr~ 105 (117)
T PF06718_consen 88 RLAELFADPEVAYVHVRN 105 (117)
T ss_pred HHHHHhcCCCceEEEeec
Confidence 888999999999888644
No 21
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=22.84 E-value=2.8e+02 Score=25.14 Aligned_cols=97 Identities=14% Similarity=0.122 Sum_probs=49.8
Q ss_pred eEEEEEEecCCCChHHHHHHHHhHhcCCCeEEEEEeCCCCccc--cccccCccccccccCCcceeecCCccHHHHHHHHH
Q 017276 61 KIAFLFLARRELPLDFLWGSFFEIADVENFSIFIHSAPGFVFD--ELTTRSKFFYGRQLSNSIQVAWGESSMIAAERLLL 138 (374)
Q Consensus 61 KiAfLilah~~~~~~~l~~rl~~~ld~~~~~IyIHvD~k~~~~--~~~~~s~vf~~r~i~~rv~V~WG~~SlV~A~l~Ll 138 (374)
++..+|.+++.... +.+.++++......|.| +|.++.-. +.....++ + + +...|+|++ .|--.++
T Consensus 1 ~isvii~~~Ne~~~---l~~~l~sl~~~~~eiiv-vD~gStD~t~~i~~~~~~---~-v---~~~~~~g~~--~~~n~~~ 67 (229)
T cd02511 1 TLSVVIITKNEERN---IERCLESVKWAVDEIIV-VDSGSTDRTVEIAKEYGA---K-V---YQRWWDGFG--AQRNFAL 67 (229)
T ss_pred CEEEEEEeCCcHHH---HHHHHHHHhcccCEEEE-EeCCCCccHHHHHHHcCC---E-E---EECCCCChH--HHHHHHH
Confidence 47889999988766 77777777422135555 56554311 11111111 1 1 111566653 2222233
Q ss_pred HHHhcCCCCCEEEEecCCcccCCC-hHHHHHHHhcCC
Q 017276 139 EAALEDPANQRFVLLSDSCVPIYN-FSYVYKYLMASP 174 (374)
Q Consensus 139 ~~AL~d~~~~yfiLLSgsd~PL~s-~~~I~~~L~~~~ 174 (374)
+.| ..+|++.|-..+.+-.. .+++.+.+.+++
T Consensus 68 ~~a----~~d~vl~lDaD~~~~~~~~~~l~~~~~~~~ 100 (229)
T cd02511 68 ELA----TNDWVLSLDADERLTPELADEILALLATDD 100 (229)
T ss_pred HhC----CCCEEEEEeCCcCcCHHHHHHHHHHHhCCC
Confidence 333 34678888777775433 334555555543
No 22
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.61 E-value=1.9e+02 Score=26.62 Aligned_cols=22 Identities=14% Similarity=0.253 Sum_probs=11.1
Q ss_pred ecCCccH-HHHHHHHHHHHhcCC
Q 017276 124 AWGESSM-IAAERLLLEAALEDP 145 (374)
Q Consensus 124 ~WG~~Sl-V~A~l~Ll~~AL~d~ 145 (374)
.=|+.++ +.-.|+-|..+.+-|
T Consensus 127 S~G~L~LPis~VLqym~s~y~lP 149 (197)
T COG4698 127 SLGGLPLPISHVLQYMKSMYDLP 149 (197)
T ss_pred ecCCccCCHHHHHHHHHhhccCC
Confidence 3455554 444555555555433
No 23
>PRK05529 cell division protein FtsQ; Provisional
Probab=20.29 E-value=61 Score=31.00 Aligned_cols=38 Identities=8% Similarity=0.101 Sum_probs=0.0
Q ss_pred CCCCCCCCCcceeeehhHHHHHHHHHHHHHHHHHhhccc
Q 017276 2 TKKAAPKVGRHVLWFSWKLVTFFCIAFSLVALFRLHLRY 40 (374)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (374)
+++.++..||+++|+-+.+. ++.+++++++++...|.|
T Consensus 24 ~~~~~~~~~~r~~~~~~~~~-~~~~l~~l~~~~~~Sp~~ 61 (255)
T PRK05529 24 VRRFTTRIRRRFILLACAVG-AVLTLLLFVMLSAYSPLL 61 (255)
T ss_pred hhchhhhccchhhhHHHHHH-HHHHHHHHHHHheeCCce
No 24
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=20.09 E-value=1.1e+02 Score=26.04 Aligned_cols=21 Identities=10% Similarity=0.401 Sum_probs=14.1
Q ss_pred eehhHHHHHHHHHHHHHHHHH
Q 017276 15 WFSWKLVTFFCIAFSLVALFR 35 (374)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~ 35 (374)
|.-|.++++++++++++...+
T Consensus 2 W~l~~iii~~i~l~~~~~~~~ 22 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLFYCH 22 (130)
T ss_pred eeeHHHHHHHHHHHHHHHHHH
Confidence 777888777776666555444
Done!