Query 017277
Match_columns 374
No_of_seqs 178 out of 1371
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 07:09:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017277.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017277hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0748 Predicted membrane pro 100.0 1.2E-69 2.6E-74 520.5 23.0 272 35-370 5-277 (286)
2 PF03006 HlyIII: Haemolysin-II 100.0 1.9E-53 4.2E-58 394.3 19.5 221 75-356 1-222 (222)
3 COG1272 Predicted membrane pro 100.0 8.4E-41 1.8E-45 309.4 20.1 225 51-365 1-225 (226)
4 TIGR01065 hlyIII channel prote 100.0 2.6E-40 5.6E-45 304.6 20.3 169 174-362 35-203 (204)
5 PRK15087 hemolysin; Provisiona 100.0 1.4E-37 3.1E-42 289.1 21.3 165 175-363 51-216 (219)
6 KOG4243 Macrophage maturation- 99.7 9E-18 1.9E-22 152.9 4.1 170 172-364 114-289 (298)
7 PF05875 Ceramidase: Ceramidas 97.7 0.0093 2E-07 57.0 21.1 166 178-358 56-233 (262)
8 PF04080 Per1: Per1-like ; In 94.9 2.3 4.9E-05 41.1 17.0 168 178-363 89-266 (267)
9 KOG2970 Predicted membrane pro 93.7 2.1 4.6E-05 41.6 13.9 172 177-367 140-314 (319)
10 PF13965 SID-1_RNA_chan: dsRNA 91.0 8.2 0.00018 41.3 15.6 27 330-360 527-553 (570)
11 PF12036 DUF3522: Protein of u 82.1 12 0.00026 34.0 9.5 40 187-226 39-81 (186)
12 KOG3059 N-acetylglucosaminyltr 61.3 1.7E+02 0.0036 28.6 13.4 84 270-368 117-219 (292)
13 KOG4255 Uncharacterized conser 57.5 2.2E+02 0.0048 28.8 13.8 44 271-334 144-187 (439)
14 PF06609 TRI12: Fungal trichot 38.1 1.6E+02 0.0034 31.9 8.8 22 205-226 232-253 (599)
15 PF03839 Sec62: Translocation 35.0 1.1E+02 0.0024 28.8 6.2 13 273-285 138-150 (224)
16 PF14619 SnAC: Snf2-ATP coupli 32.1 14 0.00031 28.4 -0.1 18 38-55 17-34 (74)
17 TIGR00869 sec62 protein transl 29.5 1.9E+02 0.0041 27.4 6.8 14 272-285 145-158 (232)
18 PF14015 DUF4231: Protein of u 29.1 1.9E+02 0.0041 23.2 6.1 28 202-229 11-38 (112)
19 PF02076 STE3: Pheromone A rec 28.3 3.5E+02 0.0076 26.2 8.7 58 303-361 29-86 (283)
20 PF10348 DUF2427: Domain of un 25.7 3.7E+02 0.0081 22.0 9.7 35 315-357 63-97 (105)
21 PF05915 DUF872: Eukaryotic pr 24.4 1.3E+02 0.0029 25.2 4.4 18 271-288 74-91 (115)
22 COG5237 PER1 Predicted membran 23.1 6.9E+02 0.015 24.2 12.7 46 43-95 78-123 (319)
No 1
>KOG0748 consensus Predicted membrane proteins, contain hemolysin III domain [General function prediction only; Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-69 Score=520.51 Aligned_cols=272 Identities=50% Similarity=0.900 Sum_probs=241.7
Q ss_pred hhhcccceeccCCCcccccCCcccCCccCCCCHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 017277 35 MKKEKRLVKFQELPDYMKDNEYILDYYRCEWPLKDACLSVFSWHNETLNIWTHLVGFFIFAVLVVMSSMEKLELESSFIM 114 (374)
Q Consensus 35 ~~~~~~l~~~~elP~~~~dN~yI~~GYR~~~s~~~cl~SlF~~HNET~NIWTHlig~~~fl~l~~~~~~~~~~~~~~~~~ 114 (374)
..+.++++++||+|+|+||||||++|||+..|.++|++|+|++||||+||||||+|+++|+.+.+.....
T Consensus 5 ~~~~~~l~~~~~lP~~~~dn~yi~~gyR~~~s~~~c~~S~f~~hNEt~NiwTHLlg~i~f~~~~~~~~~~---------- 74 (286)
T KOG0748|consen 5 LLKRPRLLPWDELPEWLKDNEYILTGYRPGSSFRACFKSIFQWHNETLNIWTHLLGFILFLFLLILFMPR---------- 74 (286)
T ss_pred cccccccCChhhCCHHHhcCcceeCccCCCCCHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHccc----------
Confidence 3457789999999999999999999999779999999999999999999999999999999998765320
Q ss_pred hhhcCCCCCcCCCcccccccccccccccCCccccCCCccCCCCCCCCcccccccccccCCchhHHHHHHHHHHHHHHHHH
Q 017277 115 KKFFSRPGEIFGPFVPMMMMKNDTMNVSDNHMMFPGSLMNNITEPSGFHIREQVTQEVIPKWPWFVFLFGAMGCLICSSL 194 (374)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~~Stl 194 (374)
...+. +......+.+|.++ ++++|++
T Consensus 75 ----------~~~~~-----------------------------------------~~~~~~~~~lf~~~---~~~~S~~ 100 (286)
T KOG0748|consen 75 ----------VLLPV-----------------------------------------DSHLSEKIFLFFLG---CLLLSSL 100 (286)
T ss_pred ----------ccccc-----------------------------------------cccchHHHHHHHHH---HHHHHHH
Confidence 00000 00000114555555 4444999
Q ss_pred hhhcccccHhHHHHHHhhhhhhHHHHHhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccCCCcccchhHH
Q 017277 195 SHLLACHSRRFNIFFWRLDYAGISLMIVSSFFAPIYYTFYCHPQTRFLYLTSITTLGILAIITLLAPGLSSPRFRSFRAS 274 (374)
Q Consensus 195 yH~f~~hS~~~~~~~~~lDy~GI~llI~Gs~~p~~yy~f~c~p~~~~~y~~~i~~l~~~~~~~~l~~~f~~~~~r~~R~~ 274 (374)
||+++|||++.++.|.++||+||+++|.||++|.+||+|+|++.++.+|+..+.++|++++++.+.++++++++|.+|+.
T Consensus 101 ~H~~~~~s~~~~~~~~~lDY~GIs~li~gS~~~~~yy~f~c~~~~~~iy~~~~~~lgi~~~~~~l~~~~~~~~~r~~R~~ 180 (286)
T KOG0748|consen 101 YHLFSCHSEKVSRFFLKLDYAGISLLIIGSFLPIIYYAFYCHPFFRLIYLPIILVLGLLAIFVSLSDKFRTPKRRPLRAG 180 (286)
T ss_pred HHHHhcccHHHHHHHHHccHHhhHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHheeechhhhCCccchhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHhcCC-chhhHHHHHHHHHHHHHHhhhhhccccCCCcCCCCccccCCchhhHHHHHHHHHHH
Q 017277 275 LFLAMGFSGVIPATHALILHWGH-PHVYISLGYELAMAVLYSVGAGFYVGRIPERWKPGAFDIAGHSHQIFHVFVVLGAL 353 (374)
Q Consensus 275 ~f~~~g~~~~~Pi~h~i~~~~~~-~~~~~~l~~~i~~~~~y~~G~~fYa~r~PEr~~PG~FD~~G~SHqifHifV~~g~~ 353 (374)
+|+.+|.++++|++|++...|+. +.....+.++++++++|++|++||++|+||||+|||||++||||||||++|++|++
T Consensus 181 ~f~~~~~~~i~P~~h~~~~~g~~~~~~~~~~~~~~~~~~~yi~ga~fY~~riPER~~PGkfD~~G~SHQifHv~vv~~a~ 260 (286)
T KOG0748|consen 181 VFLLLGLSGILPLLHRLILFGGRGPEVVIALGYVILMAVLYLLGALFYATRIPERWFPGKFDIWGHSHQIFHVLVVLAAL 260 (286)
T ss_pred HHHHHHHhhccHhhhheeeecCCccceehhhhHHHHHHHHHHHHHHHhhcCCCcccCCCccceeCChhHHHHHHHHHHHH
Confidence 99999999999999999887654 45677899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCC
Q 017277 354 AHCAATLFIMDFRQGSP 370 (374)
Q Consensus 354 ~h~~ai~~~~~~r~~~~ 370 (374)
+|+.+++.++++|++..
T Consensus 261 ~~~~a~~~~~~~~~~~~ 277 (286)
T KOG0748|consen 261 FHLEAVLLDYEWRHSHL 277 (286)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999999999874
No 2
>PF03006 HlyIII: Haemolysin-III related; InterPro: IPR004254 Members of this family are integral membrane proteins. This family includes proteins that are hemolysin-III homologs.; GO: 0016021 integral to membrane
Probab=100.00 E-value=1.9e-53 Score=394.26 Aligned_cols=221 Identities=46% Similarity=0.824 Sum_probs=192.4
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcCCCcccccccccccccccCCccccCCCccC
Q 017277 75 FSWHNETLNIWTHLVGFFIFAVLVVMSSMEKLELESSFIMKKFFSRPGEIFGPFVPMMMMKNDTMNVSDNHMMFPGSLMN 154 (374)
Q Consensus 75 F~~HNET~NIWTHlig~~~fl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 154 (374)
|++||||+|||||++|+++++.+....... .. . +
T Consensus 1 F~~hNEt~NiwtHll~~~~~~~~~~~l~~~-------------~~---------------~------------------~ 34 (222)
T PF03006_consen 1 FQLHNETVNIWTHLLGAILFLALLIFLLSL-------------AS---------------S------------------P 34 (222)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHH-------------Hh---------------c------------------c
Confidence 789999999999999999997776554320 00 0 0
Q ss_pred CCCCCCCcccccccccccCCchhHHHHHHHHHHHHHHHHHhhhcccccH-hHHHHHHhhhhhhHHHHHhhhhhhhhhhhh
Q 017277 155 NITEPSGFHIREQVTQEVIPKWPWFVFLFGAMGCLICSSLSHLLACHSR-RFNIFFWRLDYAGISLMIVSSFFAPIYYTF 233 (374)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~~StlyH~f~~hS~-~~~~~~~~lDy~GI~llI~Gs~~p~~yy~f 233 (374)
.. ++.+++++.+|++|+++|+.+|++||+++|||+ +++++|+++||+||+++|+||++|.+||++
T Consensus 35 ------------~~--~~~~~~~~~~~~~~~~~~~~~St~yH~f~~~s~~~~~~~~~~lD~~gI~l~i~gs~~p~~~~~~ 100 (222)
T PF03006_consen 35 ------------SF--SPWDYIPFLIYLLSAILCFLCSTLYHLFSCHSEGKVYHIFLRLDYAGIFLLIAGSYTPFIYYGF 100 (222)
T ss_pred ------------CC--CHHHHHHHHHHHHHHHHHHHhHHHhhCCCcCCcHHHHHHHHhcchhhhhHhHhhhhhhHHHhhc
Confidence 00 123478999999999999999999999999998 899999999999999999999999999999
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHhhccCCCcccchhHHHHHHHHhhhhHHHHHHHHHhcCCchhhHHHHHHHHHHHH
Q 017277 234 YCHPQTRFLYLTSITTLGILAIITLLAPGLSSPRFRSFRASLFLAMGFSGVIPATHALILHWGHPHVYISLGYELAMAVL 313 (374)
Q Consensus 234 ~c~p~~~~~y~~~i~~l~~~~~~~~l~~~f~~~~~r~~R~~~f~~~g~~~~~Pi~h~i~~~~~~~~~~~~l~~~i~~~~~ 313 (374)
+|++.+++.|...+++++++++...+.+.+.++++|.+|+..|+++|+++++|+.|+....+....+.. +.+++.++++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~ 179 (222)
T PF03006_consen 101 YCHPWLGWFYLAFIWILALIGIVLSLFPCFSSPRFRWLRTIFFLLLGWSGIIPIFHRIFFLGGWGSPDP-LWLLILGGVL 179 (222)
T ss_pred cccchHHHHHHHHHHHHHHHhHHhhcchhhcCCccceeeehHhHHHHHHHHhhhHHHHHHhccccchHH-HHHHHHHHHH
Confidence 999999999999999988888888888888889999999999999999999999996643332112224 8889999999
Q ss_pred HHhhhhhccccCCCcCCCCccccCCchhhHHHHHHHHHHHHHH
Q 017277 314 YSVGAGFYVGRIPERWKPGAFDIAGHSHQIFHVFVVLGALAHC 356 (374)
Q Consensus 314 y~~G~~fYa~r~PEr~~PG~FD~~G~SHqifHifV~~g~~~h~ 356 (374)
|++|++||++|+|||++||+||++|+||||||++|++|+++||
T Consensus 180 y~~G~~fy~~~~PEr~~pg~fD~~g~sHqi~Hi~v~~~~~~h~ 222 (222)
T PF03006_consen 180 YLLGAVFYATRIPERWFPGKFDIWGHSHQIWHIFVVLAALCHY 222 (222)
T ss_pred HHHhHHHhhhccccccCCCCcCCCCccHHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999996
No 3
>COG1272 Predicted membrane protein, hemolysin III homolog [General function prediction only]
Probab=100.00 E-value=8.4e-41 Score=309.37 Aligned_cols=225 Identities=30% Similarity=0.424 Sum_probs=188.3
Q ss_pred cccCCcccCCccCCCCHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcCCCccc
Q 017277 51 MKDNEYILDYYRCEWPLKDACLSVFSWHNETLNIWTHLVGFFIFAVLVVMSSMEKLELESSFIMKKFFSRPGEIFGPFVP 130 (374)
Q Consensus 51 ~~dN~yI~~GYR~~~s~~~cl~SlF~~HNET~NIWTHlig~~~fl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (374)
++||+++.+|||+. .+++|||+.|+|||++|+++.+..+...... . +.
T Consensus 1 ~~d~~~~~~~~~~~---------~~~~~~e~~n~~tHlvGail~i~~l~~l~~~-------------a---------~~- 48 (226)
T COG1272 1 QRDNNYIAEGKRSK---------SYSWHEEIANAITHLIGAILAIVGLVLLLVY-------------A---------LI- 48 (226)
T ss_pred CCCchhhhcccccc---------cccccccHHHHHHHHHHHHHHHHHHHHHHHH-------------H---------Hh-
Confidence 46899999999977 8899999999999999999988776654320 0 00
Q ss_pred ccccccccccccCCccccCCCccCCCCCCCCcccccccccccCCchhHHHHHHHHHHHHHHHHHhhhcccccHhHHHHHH
Q 017277 131 MMMMKNDTMNVSDNHMMFPGSLMNNITEPSGFHIREQVTQEVIPKWPWFVFLFGAMGCLICSSLSHLLACHSRRFNIFFW 210 (374)
Q Consensus 131 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~~StlyH~f~~hS~~~~~~~~ 210 (374)
+ . +..+.+++.+|+++++.|+++|++||.++++ ++.+.+++
T Consensus 49 ----~-------------------------------~---~~~~~~~~~iy~~sl~~l~~~St~YH~~~~~-~~~k~~~r 89 (226)
T COG1272 49 ----T-------------------------------G---SALAVIVFSIYGLSLFLLFLVSTLYHSIPNG-QKAKAILR 89 (226)
T ss_pred ----c-------------------------------C---ChhHhhhhhHHHHHHHHHHHHHHHHHcCCCc-hHHHHHHH
Confidence 0 0 2334678999999999999999999999986 88999999
Q ss_pred hhhhhhHHHHHhhhhhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHhhccCCCcccchhHHHHHHHHhhhhHHHHHH
Q 017277 211 RLDYAGISLMIVSSFFAPIYYTFYCHPQTRFLYLTSITTLGILAIITLLAPGLSSPRFRSFRASLFLAMGFSGVIPATHA 290 (374)
Q Consensus 211 ~lDy~GI~llI~Gs~~p~~yy~f~c~p~~~~~y~~~i~~l~~~~~~~~l~~~f~~~~~r~~R~~~f~~~g~~~~~Pi~h~ 290 (374)
|+||+||+++|+||++|.++++++|. +++.++.++|.++ +++++.+.+..+++|++++.+|++|||++++|+.+.
T Consensus 90 k~DH~~I~vLIAgSyTP~~l~~l~~~--~~~~~~~iiW~la---l~Gi~~kl~~~~~~r~ls~~~yl~mGw~~v~~~~~l 164 (226)
T COG1272 90 KFDHSGIYVLIAGSYTPFLLVGLYGP--LGWILLGLIWGLA---LAGILFKLFFKKRFRKLSLVLYLAMGWLGLIVIKPL 164 (226)
T ss_pred HccHHHHHHHHHHhhHHHhHHHhccc--hHHHHHHHHHHHH---HHHHhhhhhccCcCceeeehhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999854 6777777777654 456667777779999999999999999999888776
Q ss_pred HHHhcCCchhhHHHHHHHHHHHHHHhhhhhccccCCCcCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 017277 291 LILHWGHPHVYISLGYELAMAVLYSVGAGFYVGRIPERWKPGAFDIAGHSHQIFHVFVVLGALAHCAATLFIMDF 365 (374)
Q Consensus 291 i~~~~~~~~~~~~l~~~i~~~~~y~~G~~fYa~r~PEr~~PG~FD~~G~SHqifHifV~~g~~~h~~ai~~~~~~ 365 (374)
+... ....+.++++||++|++|++||+.|+ |.++++|||||+||++|+.+|+.+++..+..
T Consensus 165 ~~~l-----~~~~~~~l~~GGv~YsvG~ifY~~~~---------~~~~~~H~iwH~fVv~ga~~Hf~ai~~~~~~ 225 (226)
T COG1272 165 IAKL-----GLIGLVLLALGGVLYSVGAIFYVLRI---------DRIPYSHAIWHLFVVGGAACHFIAILFYVIL 225 (226)
T ss_pred HHhC-----chHHHHHHHHHhHHheeeeEEEEEee---------ccCCchHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6422 24678899999999999999999996 5556899999999999999999999987754
No 4
>TIGR01065 hlyIII channel protein, hemolysin III family. This family includes proteins from pathogenic and non-pathogenic bacteria, Homo sapiens and Drosophila. In Bacillus cereus, a pathogen, it has been show to function as a channel-forming cytolysin. The human protein is expressed preferentially in mature macrophages, consistent with a role cytolytic role.
Probab=100.00 E-value=2.6e-40 Score=304.63 Aligned_cols=169 Identities=21% Similarity=0.246 Sum_probs=143.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhhcccccHhHHHHHHhhhhhhHHHHHhhhhhhhhhhhhccccchhHHHHHHHHHHHHH
Q 017277 174 PKWPWFVFLFGAMGCLICSSLSHLLACHSRRFNIFFWRLDYAGISLMIVSSFFAPIYYTFYCHPQTRFLYLTSITTLGIL 253 (374)
Q Consensus 174 ~~~~~~if~~~~~~~~~~StlyH~f~~hS~~~~~~~~~lDy~GI~llI~Gs~~p~~yy~f~c~p~~~~~y~~~i~~l~~~ 253 (374)
+++++.+|++|++.|+++||+||++. ||++++++++|+||+||+++|+||++|.+|++++|.+.+ .+...++. +
T Consensus 35 ~~~~~~vy~~~~~~~~~~St~yH~~~-~s~~~~~~~~rlD~~gI~~lIaGsytP~~~~~~~~~~~~--~~~~~iw~---l 108 (204)
T TIGR01065 35 AVLGFSIYGISLILLFLVSTLYHSIP-KGSKAKNWLRKIDHSMIYVLIAGTYTPFLLLALPGPLGW--TVLWIIWG---L 108 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCc-CchhHHHHHHHccHHHHHHHHHHhhHHHHHHHcCCcHHH--HHHHHHHH---H
Confidence 47789999999999999999999999 899999999999999999999999999999999865533 33444444 3
Q ss_pred HHHHHHhhccCCCcccchhHHHHHHHHhhhhHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHhhhhhccccCCCcCCCCc
Q 017277 254 AIITLLAPGLSSPRFRSFRASLFLAMGFSGVIPATHALILHWGHPHVYISLGYELAMAVLYSVGAGFYVGRIPERWKPGA 333 (374)
Q Consensus 254 ~~~~~l~~~f~~~~~r~~R~~~f~~~g~~~~~Pi~h~i~~~~~~~~~~~~l~~~i~~~~~y~~G~~fYa~r~PEr~~PG~ 333 (374)
++.+++.+.+..+++|++|+++|++|||++++|+.+... . .....+.+++.|+++|++|++||+.|+|||+.|
T Consensus 109 a~~gi~~~~~~~~~~r~~r~~~y~~~G~~~v~~~~~~~~-~----~~~~~~~~l~~gg~~Y~~G~~fY~~~~p~~~~~-- 181 (204)
T TIGR01065 109 AIGGIIYKLFFHKRPRWLSLFLYLIMGWLVVLVIKPLYH-N----LPGAGFSLLAAGGLLYTVGAIFYALKWPIPFTY-- 181 (204)
T ss_pred HHHHHHHHHHccCCCchhHHHHHHHHHHHHHHHHHHHHH-h----CCHHHHHHHHHHhHHHHcchHheeecCCCCCCc--
Confidence 455667888889999999999999999998877654321 1 124568888999999999999999999999644
Q ss_pred cccCCchhhHHHHHHHHHHHHHHHHHHHH
Q 017277 334 FDIAGHSHQIFHVFVVLGALAHCAATLFI 362 (374)
Q Consensus 334 FD~~G~SHqifHifV~~g~~~h~~ai~~~ 362 (374)
|||||+||++|+.+|+.+++..
T Consensus 182 -------H~iwH~fV~~g~~~h~~~i~~~ 203 (204)
T TIGR01065 182 -------HAIWHLFVLGASACHFVAILFY 203 (204)
T ss_pred -------ChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998864
No 5
>PRK15087 hemolysin; Provisional
Probab=100.00 E-value=1.4e-37 Score=289.06 Aligned_cols=165 Identities=23% Similarity=0.322 Sum_probs=139.1
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhcccccHhHHHHHHhhhhhhHHHHHhhhhhhhhhhhhccccchhHHHHHHHHHHHHHH
Q 017277 175 KWPWFVFLFGAMGCLICSSLSHLLACHSRRFNIFFWRLDYAGISLMIVSSFFAPIYYTFYCHPQTRFLYLTSITTLGILA 254 (374)
Q Consensus 175 ~~~~~if~~~~~~~~~~StlyH~f~~hS~~~~~~~~~lDy~GI~llI~Gs~~p~~yy~f~c~p~~~~~y~~~i~~l~~~~ 254 (374)
..++.+|++|+++|+.+||+||+++ +++.+++++|+||+||+++|+|||+|++|+++.| | +++.....+|.+ +
T Consensus 51 ~~~~~vy~~s~~~l~~~StlYH~~~--~~~~~~~~~rlDh~~I~llIaGsytP~~~~~~~~-~-~~~~l~~~iW~~---a 123 (219)
T PRK15087 51 ITSYSLYGGSMILLFLASTLYHAIP--HQRAKRWLKKFDHCAIYLLIAGTYTPFLLVGLDS-P-LARGLMIVIWSL---A 123 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCC--chHHHHHHHHccHHHHHHHHHHhhHHHHHHHccC-H-HHHHHHHHHHHH---H
Confidence 5578999999999999999999998 4788999999999999999999999999999964 4 344444444543 4
Q ss_pred HHHHHhhccCCCcccchhHHHHHHHHhhhhHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHhhhhhcccc-CCCcCCCCc
Q 017277 255 IITLLAPGLSSPRFRSFRASLFLAMGFSGVIPATHALILHWGHPHVYISLGYELAMAVLYSVGAGFYVGR-IPERWKPGA 333 (374)
Q Consensus 255 ~~~~l~~~f~~~~~r~~R~~~f~~~g~~~~~Pi~h~i~~~~~~~~~~~~l~~~i~~~~~y~~G~~fYa~r-~PEr~~PG~ 333 (374)
+.+++.+.+..+|+|++|+++|++|||++++|+.+..... ....+.++++||++|++|++||+.| +||
T Consensus 124 ~~Gi~~~~~~~~~~r~l~~~~Yl~mGw~~v~~~~~l~~~~-----~~~~l~~l~~GG~~Y~~G~~fY~~~~~p~------ 192 (219)
T PRK15087 124 LLGILFKLAFAHRFKVLSLVTYLAMGWLSLIVIYQLAIKL-----AIGGVTLLAVGGVVYSLGVIFYVCKRIPY------ 192 (219)
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHhC-----CHHHHHHHHHHhHHHHhhHHHHccCCCCC------
Confidence 4555667778899999999999999999999998866422 2457888999999999999999985 443
Q ss_pred cccCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 017277 334 FDIAGHSHQIFHVFVVLGALAHCAATLFIM 363 (374)
Q Consensus 334 FD~~G~SHqifHifV~~g~~~h~~ai~~~~ 363 (374)
||||||+||++|+.+|+.+++..+
T Consensus 193 ------~H~IwH~fVl~ga~~H~~ai~~~~ 216 (219)
T PRK15087 193 ------NHAIWHGFVLGGSVCHFLAIYLYV 216 (219)
T ss_pred ------chhHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999998765
No 6
>KOG4243 consensus Macrophage maturation-associated protein [Defense mechanisms]
Probab=99.69 E-value=9e-18 Score=152.91 Aligned_cols=170 Identities=21% Similarity=0.257 Sum_probs=127.6
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhhcccc-c-----HhHHHHHHhhhhhhHHHHHhhhhhhhhhhhhccccchhHHHHH
Q 017277 172 VIPKWPWFVFLFGAMGCLICSSLSHLLACH-S-----RRFNIFFWRLDYAGISLMIVSSFFAPIYYTFYCHPQTRFLYLT 245 (374)
Q Consensus 172 ~~~~~~~~if~~~~~~~~~~StlyH~f~~h-S-----~~~~~~~~~lDy~GI~llI~Gs~~p~~yy~f~c~p~~~~~y~~ 245 (374)
+..++..++|+++.+.+|..||.||..++. | +..++.+.++|-+.|+++|++||.|++-.. .|.|..... -.
T Consensus 114 d~q~i~awIYG~~lc~LFt~STvfH~~~~~~~hqn~~r~l~~~lH~cDRa~IY~FIAaSY~PWLtLr-~~g~~~~~m-~W 191 (298)
T KOG4243|consen 114 DWQKITAWIYGMGLCALFTVSTVFHIVSWKKSHQNKLRTLEHCLHMCDRAVIYFFIAASYAPWLTLR-ELGPLASHM-RW 191 (298)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhhhcccccccHH-hhCcHHHHH-HH
Confidence 334567889999999999999999998753 2 246788999999999999999999987443 445532211 11
Q ss_pred HHHHHHHHHHHHHHhhccCCCcccchhHHHHHHHHhhhhHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHhhhhhccccC
Q 017277 246 SITTLGILAIITLLAPGLSSPRFRSFRASLFLAMGFSGVIPATHALILHWGHPHVYISLGYELAMAVLYSVGAGFYVGRI 325 (374)
Q Consensus 246 ~i~~l~~~~~~~~l~~~f~~~~~r~~R~~~f~~~g~~~~~Pi~h~i~~~~~~~~~~~~l~~~i~~~~~y~~G~~fYa~r~ 325 (374)
++|+++. .+++...+..+||+.+.+.+|+.||.. |.+..... .....+..+..||.+|.+|++|+.+.
T Consensus 192 ~IWlmA~---~Gi~Yq~~fHErYK~lEt~~Ylvmg~g---Palvv~sm-----~~~~Gl~~l~~GG~~Y~lGvvFFK~D- 259 (298)
T KOG4243|consen 192 FIWLMAA---GGIIYQFLFHERYKVLETFFYLVMGFG---PALVVTSM-----NNTDGLQELATGGLFYCLGVVFFKSD- 259 (298)
T ss_pred HHHHHHh---cchhhhhhHHHHHHHHHHHHHHHHhcC---ceEEEEEe-----CCchhHHHHHhCCEEEEEEEEEEecC-
Confidence 3555543 345556666788999999999999986 43321111 12457788889999999999999876
Q ss_pred CCcCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 017277 326 PERWKPGAFDIAGHSHQIFHVFVVLGALAHCAATLFIMD 364 (374)
Q Consensus 326 PEr~~PG~FD~~G~SHqifHifV~~g~~~h~~ai~~~~~ 364 (374)
.-.| ..|.|||+||++|+-||+.|++..+-
T Consensus 260 --G~ip-------fAHAIWHLFV~l~A~cHyYAi~~~Ly 289 (298)
T KOG4243|consen 260 --GIIP-------FAHAIWHLFVALAAGCHYYAIWKYLY 289 (298)
T ss_pred --Ccee-------hHHHHHHHHHHHHcchhHHHHHHHHh
Confidence 4445 48999999999999999999987653
No 7
>PF05875 Ceramidase: Ceramidase; InterPro: IPR008901 This entry consists of several ceramidases. Ceramidases are enzymes involved in regulating cellular levels of ceramides, sphingoid bases, and their phosphates.; GO: 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, 0006672 ceramide metabolic process, 0016021 integral to membrane
Probab=97.70 E-value=0.0093 Score=57.01 Aligned_cols=166 Identities=14% Similarity=0.071 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccccHhHHHHHHhhhhhhHHHHHhhhhhhhhhhhhcc---ccchhHHHHHHHHHHHHHH
Q 017277 178 WFVFLFGAMGCLICSSLSHLLACHSRRFNIFFWRLDYAGISLMIVSSFFAPIYYTFYC---HPQTRFLYLTSITTLGILA 254 (374)
Q Consensus 178 ~~if~~~~~~~~~~StlyH~f~~hS~~~~~~~~~lDy~GI~llI~Gs~~p~~yy~f~c---~p~~~~~y~~~i~~l~~~~ 254 (374)
+.+..++.+..=+.|+.||+.-. ...+.+|-..|...+... +|..+.. .+..+......+...+ +
T Consensus 56 ~~l~~~~l~~VGiGS~~FHaTl~------~~~ql~DelPMl~~~~~~----~~~~~~~~~~~~~~~~~~~~~L~~~~--~ 123 (262)
T PF05875_consen 56 FALLYLGLALVGIGSFLFHATLS------YWTQLLDELPMLWATLLF----LYIVLTRRYSSPRYRLALPLLLFIYA--V 123 (262)
T ss_pred hHHHHHHHHHHHHhHHHHHhChh------hhHHHhhhhhHHHHHHHH----HHHHhcccccCchhhHHHHHHHHHHH--H
Confidence 34555566666789999998652 346667987777554322 2333322 2223332222222222 2
Q ss_pred HHHHHhhccCCCcccchhHHHHHHHHhhhhHHHHHHHHHhcCC-chhhHHHHHHHHHHHHHHhhhhhccccCCC--cCCC
Q 017277 255 IITLLAPGLSSPRFRSFRASLFLAMGFSGVIPATHALILHWGH-PHVYISLGYELAMAVLYSVGAGFYVGRIPE--RWKP 331 (374)
Q Consensus 255 ~~~~l~~~f~~~~~r~~R~~~f~~~g~~~~~Pi~h~i~~~~~~-~~~~~~l~~~i~~~~~y~~G~~fYa~r~PE--r~~P 331 (374)
+.....-....+. ...+.|..+.+..++.....+.....+ ...+........+++.+++|.++...+.+- .+..
T Consensus 124 ~~t~~~~~~~~p~---~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~f~~a~~~W~iD~~~C~~~~~ 200 (262)
T PF05875_consen 124 VVTVLYFVLDNPV---FHQIAFASLVLLVILRSIYLIRRRVRDACRRRRARRLLLFGLALFLVAFFFWNIDRIFCSSLRA 200 (262)
T ss_pred HHHHHHhhhccch---hhhhhHHHHHHHHHHHHHHHHHHhcCchhhchHHHHHHHHHHHHHHHHHHHHHhHHHHHccccc
Confidence 2222222222222 223334444433222222111110000 112233444556778888898888776431 1111
Q ss_pred Cc------cccCCchhhHHHHHHHHHHHHHHHH
Q 017277 332 GA------FDIAGHSHQIFHVFVVLGALAHCAA 358 (374)
Q Consensus 332 G~------FD~~G~SHqifHifV~~g~~~h~~a 358 (374)
.+ +.+.-.-|.+||+++.+|++.....
T Consensus 201 ~~~~~g~p~~~~le~H~~WHilt~ig~Y~~~~~ 233 (262)
T PF05875_consen 201 IRFPYGLPLGFLLELHAWWHILTGIGAYLLIVF 233 (262)
T ss_pred cccccCCcchhHHhHHHHHHHHHHHHHHHHHHH
Confidence 11 1122247999999999999987655
No 8
>PF04080 Per1: Per1-like ; InterPro: IPR007217 A member of this family has been implemented in protein processing in the endoplasmic reticulum [].
Probab=94.90 E-value=2.3 Score=41.07 Aligned_cols=168 Identities=16% Similarity=0.220 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccccHhHHHHHHhhhhhhHHHHHhhhhhhhhhhhhcc--ccchhHHHHHHHHHHHHHHH
Q 017277 178 WFVFLFGAMGCLICSSLSHLLACHSRRFNIFFWRLDYAGISLMIVSSFFAPIYYTFYC--HPQTRFLYLTSITTLGILAI 255 (374)
Q Consensus 178 ~~if~~~~~~~~~~StlyH~f~~hS~~~~~~~~~lDy~GI~llI~Gs~~p~~yy~f~c--~p~~~~~y~~~i~~l~~~~~ 255 (374)
..++.+..+.-.+.|+++|+--. .+-.++||.+=...+..+.....--.|.- ++..+...... + ++
T Consensus 89 ~~~~~~v~~naW~wStvFH~RD~------~~TE~lDYf~A~a~vl~~l~~~~~R~f~l~~~~~~~~~~~~~--~---~~- 156 (267)
T PF04080_consen 89 YIIYAIVSMNAWIWSTVFHTRDT------PLTEKLDYFSAGATVLFGLYAAIVRIFRLYRRRRLRRIFTAL--C---IA- 156 (267)
T ss_pred eehHHHHHHHHHHHHHHHHHhcc------cHhhHhHHhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHH--H---HH-
Confidence 34666777788899999999643 35668999998888877765443323321 12222211111 1 11
Q ss_pred HHHHhhc-cCCCccc-chhHHHHHHHHhhh-hHHHHHHHHHhcCCchh---h-HHHH-HHHHHHHHHHhhhhhccccCCC
Q 017277 256 ITLLAPG-LSSPRFR-SFRASLFLAMGFSG-VIPATHALILHWGHPHV---Y-ISLG-YELAMAVLYSVGAGFYVGRIPE 327 (374)
Q Consensus 256 ~~~l~~~-f~~~~~r-~~R~~~f~~~g~~~-~~Pi~h~i~~~~~~~~~---~-~~l~-~~i~~~~~y~~G~~fYa~r~PE 327 (374)
+.+.+-. ....++. .....+=+++|+.. ++-+..........+.. . .... ..++-.+.-.+++.+=..++|-
T Consensus 157 ~~~~Hv~yL~~~~fdY~YNM~~nv~~G~~~~~lw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~~~lam~LEl~DFpP 236 (267)
T PF04080_consen 157 FYIAHVSYLSFVRFDYGYNMKANVAVGLLQNILWLLWSFRNYRRYPSVKKSYSKRWKLWPILFVVLTILAMSLELFDFPP 236 (267)
T ss_pred HHHHHHHHccccccccHhHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHhhccCc
Confidence 1111111 1122232 12233334445432 22222222211111100 0 0011 1112234445666677777766
Q ss_pred cCCCCccccCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 017277 328 RWKPGAFDIAGHSHQIFHVFVVLGALAHCAATLFIM 363 (374)
Q Consensus 328 r~~PG~FD~~G~SHqifHifV~~g~~~h~~ai~~~~ 363 (374)
-+ |.+| +|.+||+..+--++..|.-+..+.
T Consensus 237 ~~--~~lD----AHALWHl~Tip~~~~wy~Fl~~D~ 266 (267)
T PF04080_consen 237 IF--WLLD----AHALWHLATIPPTYLWYDFLIDDA 266 (267)
T ss_pred cc--ccch----HHHHHHHHHhhHHHHHHHHHHHhc
Confidence 43 5788 999999999988888777666553
No 9
>KOG2970 consensus Predicted membrane protein [Function unknown]
Probab=93.72 E-value=2.1 Score=41.61 Aligned_cols=172 Identities=15% Similarity=0.214 Sum_probs=80.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcccccHhHHHHHHhhhhhhHHHHHhhhhhhhhhhhh--ccccchhHHHHHHHHHHHHHH
Q 017277 177 PWFVFLFGAMGCLICSSLSHLLACHSRRFNIFFWRLDYAGISLMIVSSFFAPIYYTF--YCHPQTRFLYLTSITTLGILA 254 (374)
Q Consensus 177 ~~~if~~~~~~~~~~StlyH~f~~hS~~~~~~~~~lDy~GI~llI~Gs~~p~~yy~f--~c~p~~~~~y~~~i~~l~~~~ 254 (374)
...+|..-.+.-..-|+++|..-+ .+-.|+||.+-...+..+....+--.+ ...|..+.. +.++ ++++.+
T Consensus 140 l~~I~a~i~mnawiwSsvFH~rD~------~lTEklDYf~A~~~vlf~ly~a~ir~~~i~~~~~~~~~-ita~-fla~ya 211 (319)
T KOG2970|consen 140 LWLIYAYIGMNAWIWSSVFHIRDV------PLTEKLDYFSAYLTVLFGLYVALIRMLSIQSLPALRGM-ITAI-FLAFYA 211 (319)
T ss_pred chhhHHHHHHHHHHHHHhhhhcCC------chHhhhhHHHHHHHHHHHHHHHHHHHHHHhcchhhhHH-HHHH-HHHHHH
Confidence 345666666777889999999865 366789999888776655433221111 122322222 1111 111111
Q ss_pred HHHHHhhc-cCCCcccchhHHHHHHHHhhhhHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHhhhhhccccCCCcCCCCc
Q 017277 255 IITLLAPG-LSSPRFRSFRASLFLAMGFSGVIPATHALILHWGHPHVYISLGYELAMAVLYSVGAGFYVGRIPERWKPGA 333 (374)
Q Consensus 255 ~~~~l~~~-f~~~~~r~~R~~~f~~~g~~~~~Pi~h~i~~~~~~~~~~~~l~~~i~~~~~y~~G~~fYa~r~PEr~~PG~ 333 (374)
.-+... +..=.+. ....+-+++|..-.+--.+..+.....|........++. ....++..+=...+|-- -|-
T Consensus 212 --~Hi~yls~~~fdYg-yNm~~~v~~g~iq~vlw~~~~~~~~~~~s~~~i~~~~i~--~~~~LA~sLEi~DFpPy--~~~ 284 (319)
T KOG2970|consen 212 --NHILYLSFYNFDYG-YNMIVCVAIGVIQLVLWLVWSFKKRNLPSFWRIWPILIV--IFFFLAMSLEIFDFPPY--AWL 284 (319)
T ss_pred --HHHHHHhheecccc-cceeeehhhHHHHHHHHHHHHHHhhcCcchhhhhHHHHH--HHHHHHHHHHhhcCCch--hhh
Confidence 111111 1111111 111122334433222111112111111211111111121 12233333444455542 377
Q ss_pred cccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017277 334 FDIAGHSHQIFHVFVVLGALAHCAATLFIMDFRQ 367 (374)
Q Consensus 334 FD~~G~SHqifHifV~~g~~~h~~ai~~~~~~r~ 367 (374)
+| +|.+||+..+--+...+--+..+++.+.
T Consensus 285 iD----AHALWHlaTIplt~~~~~Fv~~d~~~~t 314 (319)
T KOG2970|consen 285 ID----AHALWHLATIPLTILWYDFVSDDYDFAT 314 (319)
T ss_pred cc----hHHHHHhhcCccHHHHHHHhhchhhhhc
Confidence 88 9999999998888887777776666654
No 10
>PF13965 SID-1_RNA_chan: dsRNA-gated channel SID-1
Probab=90.97 E-value=8.2 Score=41.25 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=20.9
Q ss_pred CCCccccCCchhhHHHHHHHHHHHHHHHHHH
Q 017277 330 KPGAFDIAGHSHQIFHVFVVLGALAHCAATL 360 (374)
Q Consensus 330 ~PG~FD~~G~SHqifHifV~~g~~~h~~ai~ 360 (374)
.||-|| +|.+||.+.++|.++-+..++
T Consensus 527 l~~f~D----~HDiwH~~SA~alffsf~~l~ 553 (570)
T PF13965_consen 527 LLGFFD----WHDIWHFLSAIALFFSFLVLL 553 (570)
T ss_pred CcCccc----cHHHHHHHHHHHHHHHHHHHH
Confidence 356677 999999999999887555544
No 11
>PF12036 DUF3522: Protein of unknown function (DUF3522); InterPro: IPR021910 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 220 to 787 amino acids in length.
Probab=82.08 E-value=12 Score=34.04 Aligned_cols=40 Identities=13% Similarity=0.056 Sum_probs=21.1
Q ss_pred HHHHHHHHhhhccccc-H--hHHHHHHhhhhhhHHHHHhhhhh
Q 017277 187 GCLICSSLSHLLACHS-R--RFNIFFWRLDYAGISLMIVSSFF 226 (374)
Q Consensus 187 ~~~~~StlyH~f~~hS-~--~~~~~~~~lDy~GI~llI~Gs~~ 226 (374)
..+++|+.||+-..-. + -.-.-|.++|+......+..-.+
T Consensus 39 ~tm~~S~~YHacd~~~~~~~lc~~~~~~L~~~~~~~s~~~~~v 81 (186)
T PF12036_consen 39 FTMFFSTFYHACDSGPGEIFLCIMDWHRLQNIDFIGSFLSIWV 81 (186)
T ss_pred HHHHHHHhcccccCCCCceEEeechHHHHHHHHHHHHHHHHHH
Confidence 4567999999975111 0 11234556666555444433333
No 12
>KOG3059 consensus N-acetylglucosaminyltransferase complex, subunit PIG-C/GPI2, required for phosphatidylinositol biosynthesis [Lipid transport and metabolism]
Probab=61.28 E-value=1.7e+02 Score=28.63 Aligned_cols=84 Identities=15% Similarity=0.121 Sum_probs=50.0
Q ss_pred chhHHHHHHHHhhhhHHHHHHHHHhcCCchhhH-HHHHHHH------------------HHHHHHhhhhhccccCCCcCC
Q 017277 270 SFRASLFLAMGFSGVIPATHALILHWGHPHVYI-SLGYELA------------------MAVLYSVGAGFYVGRIPERWK 330 (374)
Q Consensus 270 ~~R~~~f~~~g~~~~~Pi~h~i~~~~~~~~~~~-~l~~~i~------------------~~~~y~~G~~fYa~r~PEr~~ 330 (374)
.+++.+.+..++.++.|+++-+...+....... ..+..+. ..-.+..+.+++++|.|.+
T Consensus 117 ~lks~~~vt~~ly~lsPVl~TLt~SiSsDsI~a~sv~l~L~~~ff~~y~~s~~~vs~~lS~na~v~~sv~LaSRl~~~-- 194 (292)
T KOG3059|consen 117 DLKSIFTVTLFLYGLSPVLKTLTKSISSDSIWAMSVWLLLGNLFFHDYGISTIRVSGPLSLNAAVSASVLLASRLEKS-- 194 (292)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhcCCcchHHHHHHHHHHHHHhcccccccccccCCcchHHHHHHHHHHHHHhcCCc--
Confidence 356777777788888898877654333221111 1111111 1234677889999997664
Q ss_pred CCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 017277 331 PGAFDIAGHSHQIFHVFVVLGALAHCAATLFIMDFRQG 368 (374)
Q Consensus 331 PG~FD~~G~SHqifHifV~~g~~~h~~ai~~~~~~r~~ 368 (374)
+|+|.++-...|..+++..+..|-.
T Consensus 195 -------------~~vF~fllfai~~~al~p~~~~~i~ 219 (292)
T KOG3059|consen 195 -------------IHVFNFLLFAIQLFALLPNFRKRIK 219 (292)
T ss_pred -------------hHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4666666666777777766555543
No 13
>KOG4255 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.55 E-value=2.2e+02 Score=28.83 Aligned_cols=44 Identities=30% Similarity=0.459 Sum_probs=29.3
Q ss_pred hhHHHHHHHHhhhhHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHhhhhhccccCCCcCCCCcc
Q 017277 271 FRASLFLAMGFSGVIPATHALILHWGHPHVYISLGYELAMAVLYSVGAGFYVGRIPERWKPGAF 334 (374)
Q Consensus 271 ~R~~~f~~~g~~~~~Pi~h~i~~~~~~~~~~~~l~~~i~~~~~y~~G~~fYa~r~PEr~~PG~F 334 (374)
+-...|+.+|+++++|-+-.+....+...+. ..+.|+|.+|-+|
T Consensus 144 fL~afFvG~GLSaLlPsllaLaQGtg~~~C~--------------------~n~t~~r~fP~rF 187 (439)
T KOG4255|consen 144 FLNAFFVGMGLSALLPSLLALAQGTGRLECD--------------------LNGTPGRPFPPRF 187 (439)
T ss_pred HHHHHHHhccHHHHHHHHHHHHccCCceeec--------------------CCCCCCCCCCCCc
Confidence 4456899999999999887665332222222 5566777667776
No 14
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=38.09 E-value=1.6e+02 Score=31.89 Aligned_cols=22 Identities=27% Similarity=0.276 Sum_probs=18.7
Q ss_pred HHHHHHhhhhhhHHHHHhhhhh
Q 017277 205 FNIFFWRLDYAGISLMIVSSFF 226 (374)
Q Consensus 205 ~~~~~~~lDy~GI~llI~Gs~~ 226 (374)
.++.+.++|+.|++++++|...
T Consensus 232 ~~~~l~~lD~IG~~L~~~Gl~L 253 (599)
T PF06609_consen 232 KREQLKELDWIGIFLFIAGLAL 253 (599)
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 3577999999999999998754
No 15
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=34.95 E-value=1.1e+02 Score=28.80 Aligned_cols=13 Identities=23% Similarity=0.634 Sum_probs=7.4
Q ss_pred HHHHHHHHhhhhH
Q 017277 273 ASLFLAMGFSGVI 285 (374)
Q Consensus 273 ~~~f~~~g~~~~~ 285 (374)
.+.|+++|..|++
T Consensus 138 gv~YlS~~~lgll 150 (224)
T PF03839_consen 138 GVYYLSVGALGLL 150 (224)
T ss_pred eeehhHHHHHHHH
Confidence 3456666655544
No 16
>PF14619 SnAC: Snf2-ATP coupling, chromatin remodelling complex
Probab=32.10 E-value=14 Score=28.37 Aligned_cols=18 Identities=28% Similarity=0.632 Sum_probs=15.0
Q ss_pred cccceeccCCCcccccCC
Q 017277 38 EKRLVKFQELPDYMKDNE 55 (374)
Q Consensus 38 ~~~l~~~~elP~~~~dN~ 55 (374)
.++|..-+|||+|++.+.
T Consensus 17 p~RLm~e~ELPe~~~~d~ 34 (74)
T PF14619_consen 17 PSRLMEESELPEWYREDI 34 (74)
T ss_pred CccccchhhchHHHHhcc
Confidence 459999999999988643
No 17
>TIGR00869 sec62 protein translocation protein, Sec62 family. protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins has been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.
Probab=29.52 E-value=1.9e+02 Score=27.38 Aligned_cols=14 Identities=43% Similarity=0.847 Sum_probs=9.1
Q ss_pred hHHHHHHHHhhhhH
Q 017277 272 RASLFLAMGFSGVI 285 (374)
Q Consensus 272 R~~~f~~~g~~~~~ 285 (374)
+.+.|+++|+.|++
T Consensus 145 ~gv~YlS~~~lgll 158 (232)
T TIGR00869 145 RGSWYLSLGALGII 158 (232)
T ss_pred HhHHHHHHHHHHHH
Confidence 45567777776654
No 18
>PF14015 DUF4231: Protein of unknown function (DUF4231)
Probab=29.07 E-value=1.9e+02 Score=23.20 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=21.7
Q ss_pred cHhHHHHHHhhhhhhHHHHHhhhhhhhh
Q 017277 202 SRRFNIFFWRLDYAGISLMIVSSFFAPI 229 (374)
Q Consensus 202 S~~~~~~~~~lDy~GI~llI~Gs~~p~~ 229 (374)
+.+.++..+++-...|.+...|+.+|.+
T Consensus 11 a~~~q~~~~~~~~~~i~~~~~~a~i~~l 38 (112)
T PF14015_consen 11 ARRAQRRYRRLRIASIILSVLGAVIPVL 38 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677778888888888888888864
No 19
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=28.25 E-value=3.5e+02 Score=26.24 Aligned_cols=58 Identities=14% Similarity=0.037 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHhhhhhccccCCCcCCCCccccCCchhhHHHHHHHHHHHHHHHHHHH
Q 017277 303 SLGYELAMAVLYSVGAGFYVGRIPERWKPGAFDIAGHSHQIFHVFVVLGALAHCAATLF 361 (374)
Q Consensus 303 ~l~~~i~~~~~y~~G~~fYa~r~PEr~~PG~FD~~G~SHqifHifV~~g~~~h~~ai~~ 361 (374)
...+..++-+.+.+-+++..-.. +.++||.+|+---=..-..+.+.++.++-...+..
T Consensus 29 li~Wl~l~nl~~~INaiIW~~n~-~~~~~~wCDI~~kl~~~~~~g~~~a~lcI~r~L~~ 86 (283)
T PF02076_consen 29 LIFWLFLSNLIYFINAIIWRDND-INWWPVWCDISTKLIIGSSVGIPAASLCIMRRLYR 86 (283)
T ss_pred HHHHHHHHHHHHHHhhhhcCCCC-CccCceeeeehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677788899999999988 77889999986544444455555555554444443
No 20
>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi. Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.
Probab=25.72 E-value=3.7e+02 Score=21.98 Aligned_cols=35 Identities=17% Similarity=0.376 Sum_probs=22.7
Q ss_pred HhhhhhccccCCCcCCCCccccCCchhhHHHHHHHHHHHHHHH
Q 017277 315 SVGAGFYVGRIPERWKPGAFDIAGHSHQIFHVFVVLGALAHCA 357 (374)
Q Consensus 315 ~~G~~fYa~r~PEr~~PG~FD~~G~SHqifHifV~~g~~~h~~ 357 (374)
..|. .|..+.|| +.|| +.|+.+=..+..-...|..
T Consensus 63 ~~g~-~~~~~~p~-lyp~------n~H~k~g~il~~l~~~q~~ 97 (105)
T PF10348_consen 63 FLGS-VYNGSTPD-LYPN------NAHGKMGWILFVLMIVQVI 97 (105)
T ss_pred HHHH-HHhcCCCC-CCCC------CHHHHHHHHHHHHHHHHHH
Confidence 3444 47778888 6675 6788777666665555553
No 21
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=24.39 E-value=1.3e+02 Score=25.17 Aligned_cols=18 Identities=28% Similarity=0.329 Sum_probs=11.9
Q ss_pred hhHHHHHHHHhhhhHHHH
Q 017277 271 FRASLFLAMGFSGVIPAT 288 (374)
Q Consensus 271 ~R~~~f~~~g~~~~~Pi~ 288 (374)
-|...++++|...++|=+
T Consensus 74 ~~~~~llilG~L~fIPG~ 91 (115)
T PF05915_consen 74 DRGWALLILGILCFIPGF 91 (115)
T ss_pred cccchHHHHHHHHHhccH
Confidence 456677778877666643
No 22
>COG5237 PER1 Predicted membrane protein [Function unknown]
Probab=23.07 E-value=6.9e+02 Score=24.16 Aligned_cols=46 Identities=17% Similarity=0.396 Sum_probs=27.6
Q ss_pred eccCCCcccccCCcccCCccCCCCHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 017277 43 KFQELPDYMKDNEYILDYYRCEWPLKDACLSVFSWHNETLNIWTHLVGFFIFA 95 (374)
Q Consensus 43 ~~~elP~~~~dN~yI~~GYR~~~s~~~cl~SlF~~HNET~NIWTHlig~~~fl 95 (374)
..+++|.++++-++ |+-+-....+-+-.+|+. +|.=||.+|+-.+.
T Consensus 78 ~~~n~~~~q~hGkW---~F~rVlG~qEfFS~~FS~----~Nfi~hy~gfh~m~ 123 (319)
T COG5237 78 NSGNIKIYQRHGKW---GFQRVLGMQEFFSALFSF----MNFITHYIGFHRML 123 (319)
T ss_pred ccCCchhhhhcCcc---ceeeehhHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 34566666654321 222224455666666765 78889999987664
Done!