Query 017277
Match_columns 374
No_of_seqs 178 out of 1371
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 11:51:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017277.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017277hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ejp_A Syndecan-4; symmetric-p 15.9 45 0.0015 19.9 0.7 15 4-18 1-15 (28)
2 2kwv_A RAD30 homolog B, DNA po 7.2 92 0.0031 21.0 -0.1 19 44-64 21-39 (48)
3 2zxe_G FXYD10, phospholemman-l 6.3 3.8E+02 0.013 19.7 2.9 30 235-264 15-44 (74)
4 1p4q_A CBP/P300-interacting tr 5.6 2.3E+02 0.0078 19.2 1.2 17 40-56 29-46 (52)
5 2ckc_A Chromodomain-helicase-D 5.2 60 0.002 24.3 -2.0 11 45-55 47-57 (80)
6 2jp3_A FXYD domain-containing 5.0 5.9E+02 0.02 18.3 3.1 27 235-261 13-39 (67)
7 2jo1_A Phospholemman; FXYD1, N 4.7 6.4E+02 0.022 18.3 3.2 27 235-261 12-38 (72)
8 2jmf_B Neurogenic locus notch 4.4 4.6E+02 0.016 14.8 1.8 16 59-74 8-23 (26)
9 2gqb_A Conserved hypothetical 4.4 2.8E+02 0.0094 22.7 1.1 9 80-88 103-111 (130)
10 4i1o_B LEPB; GAP, rabgap, hydr 4.3 3.4E+02 0.011 24.6 1.7 15 79-93 24-38 (302)
No 1
>1ejp_A Syndecan-4; symmetric-parallel-interwinded dimer, signaling protein; NMR {Synthetic} SCOP: j.80.1.1 PDB: 1ejq_A
Probab=15.92 E-value=45 Score=19.93 Aligned_cols=15 Identities=27% Similarity=0.313 Sum_probs=11.3
Q ss_pred hhhhhCCcccccCCC
Q 017277 4 QMRKKGGKMKQLDGD 18 (374)
Q Consensus 4 ~~~~~~~~~~~~~~~ 18 (374)
.||||.|-.+.+|.+
T Consensus 1 RmrKKDEGSY~Lde~ 15 (28)
T 1ejp_A 1 RMKKKDEGSYDLGKK 15 (28)
T ss_dssp CCSCCCCCCCCCCSC
T ss_pred CcccccccccccCCC
Confidence 488888887777754
No 2
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=7.19 E-value=92 Score=20.97 Aligned_cols=19 Identities=37% Similarity=0.572 Sum_probs=15.7
Q ss_pred ccCCCcccccCCcccCCccCC
Q 017277 44 FQELPDYMKDNEYILDYYRCE 64 (374)
Q Consensus 44 ~~elP~~~~dN~yI~~GYR~~ 64 (374)
++++|...|+ + |++|.|.+
T Consensus 21 F~~LP~dIQ~-E-lls~~~~e 39 (48)
T 2kwv_A 21 FKQLPADIQE-E-ILSGKSRE 39 (48)
T ss_dssp TTTSCHHHHH-H-HTTCCCSC
T ss_pred HHHCcHHHHH-H-HHhcchHH
Confidence 6899999887 3 89999874
No 3
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=6.33 E-value=3.8e+02 Score=19.68 Aligned_cols=30 Identities=27% Similarity=0.205 Sum_probs=16.9
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHhhccC
Q 017277 235 CHPQTRFLYLTSITTLGILAIITLLAPGLS 264 (374)
Q Consensus 235 c~p~~~~~y~~~i~~l~~~~~~~~l~~~f~ 264 (374)
+...+|..=+++..++.+++++.++..++.
T Consensus 15 DY~tLRigGLifA~vLfi~GI~iilS~kcr 44 (74)
T 2zxe_G 15 DYYRLRVVGLIVAAVLCVIGIIILLAGKCR 44 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred chHHheeccchhHHHHHHHHHHHHHcCccc
Confidence 345566665555556666666666665543
No 4
>1p4q_A CBP/P300-interacting transactivator 2; helix, protein-protein complex, transcription/transferase complex; NMR {Homo sapiens} SCOP: j.96.1.1
Probab=5.64 E-value=2.3e+02 Score=19.21 Aligned_cols=17 Identities=35% Similarity=0.831 Sum_probs=12.4
Q ss_pred cceeccCCCc-ccccCCc
Q 017277 40 RLVKFQELPD-YMKDNEY 56 (374)
Q Consensus 40 ~l~~~~elP~-~~~dN~y 56 (374)
.|=+..|+|+ |+-.|+|
T Consensus 29 GLdRv~ELPEL~LgqnEf 46 (52)
T 1p4q_A 29 GLDRIKELPELWLGQNEF 46 (52)
T ss_dssp TSSSCSSCCCCCSCCSTT
T ss_pred hhHHHHHhHHHHhCcchh
Confidence 5556789999 5666875
No 5
>2ckc_A Chromodomain-helicase-DNA-binding protein 7; protein-protein interaction, phosphorylation, disease mutation, nucleotide-binding; NMR {Homo sapiens} SCOP: d.76.2.1 PDB: 2v0e_A
Probab=5.25 E-value=60 Score=24.33 Aligned_cols=11 Identities=18% Similarity=0.483 Sum_probs=9.4
Q ss_pred cCCCcccccCC
Q 017277 45 QELPDYMKDNE 55 (374)
Q Consensus 45 ~elP~~~~dN~ 55 (374)
++|++|+|+||
T Consensus 47 KdL~dWLrqhP 57 (80)
T 2ckc_A 47 KDLVEWLKLHP 57 (80)
T ss_dssp HHHHHHHHHCT
T ss_pred cCHHHHHHHCC
Confidence 57889999988
No 6
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=4.96 E-value=5.9e+02 Score=18.33 Aligned_cols=27 Identities=19% Similarity=-0.087 Sum_probs=14.8
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHhh
Q 017277 235 CHPQTRFLYLTSITTLGILAIITLLAP 261 (374)
Q Consensus 235 c~p~~~~~y~~~i~~l~~~~~~~~l~~ 261 (374)
+...+|..=+++..++.+++++.++..
T Consensus 13 DY~tLRigGLifA~vLfi~GI~iilS~ 39 (67)
T 2jp3_A 13 DWESLQLGGLIFGGLLCIAGIALALSG 39 (67)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred chHHheecchhhHHHHHHHHHHHHHcC
Confidence 345566655555555555555555544
No 7
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=4.67 E-value=6.4e+02 Score=18.35 Aligned_cols=27 Identities=22% Similarity=0.084 Sum_probs=14.0
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHhh
Q 017277 235 CHPQTRFLYLTSITTLGILAIITLLAP 261 (374)
Q Consensus 235 c~p~~~~~y~~~i~~l~~~~~~~~l~~ 261 (374)
+...++..=+++..++.+++++.++..
T Consensus 12 DY~tLRiGGLifA~vLfi~GI~iilS~ 38 (72)
T 2jo1_A 12 DYQSLQIGGLVIAGILFILGILIVLSR 38 (72)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHhhccchHHHHHHHHHHHHHHHcC
Confidence 445566655554445555555555543
No 8
>2jmf_B Neurogenic locus notch protein; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster}
Probab=4.42 E-value=4.6e+02 Score=14.84 Aligned_cols=16 Identities=6% Similarity=-0.142 Sum_probs=11.0
Q ss_pred CCccCCCCHHHHHHHH
Q 017277 59 DYYRCEWPLKDACLSV 74 (374)
Q Consensus 59 ~GYR~~~s~~~cl~Sl 74 (374)
+|-..+-||..|++..
T Consensus 8 tgakqppsyedcik~~ 23 (26)
T 2jmf_B 8 TGAKQPPSYEDCIKXX 23 (26)
T ss_pred CCCCCCCCHHHHHHhh
Confidence 4555567888998753
No 9
>2gqb_A Conserved hypothetical protein; hypothetical protein conserved unknown protein, structural genomics, PSI; NMR {Rhodopseudomonas palustris} SCOP: a.282.1.1
Probab=4.35 E-value=2.8e+02 Score=22.68 Aligned_cols=9 Identities=44% Similarity=1.069 Sum_probs=7.0
Q ss_pred hhHHHHHHH
Q 017277 80 ETLNIWTHL 88 (374)
Q Consensus 80 ET~NIWTHl 88 (374)
-+.|||-|=
T Consensus 103 A~mNiwLHk 111 (130)
T 2gqb_A 103 ASMNIWLHK 111 (130)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 368999884
No 10
>4i1o_B LEPB; GAP, rabgap, hydrolase activator, RAB1B, LPG2490, GTPase-ACT proteins, hydrolysis, RAB1 hydrolase, GTP hydrolase; HET: GDP PEG; 2.70A {Legionella pneumophila subsp} PDB: 4i1m_A*
Probab=4.26 E-value=3.4e+02 Score=24.59 Aligned_cols=15 Identities=27% Similarity=0.494 Sum_probs=11.8
Q ss_pred hhhHHHHHHHHHHHH
Q 017277 79 NETLNIWTHLVGFFI 93 (374)
Q Consensus 79 NET~NIWTHlig~~~ 93 (374)
-|++|+|.-+++..=
T Consensus 24 ~E~in~Wa~iL~~~d 38 (302)
T 4i1o_B 24 SETINQWADILKTTD 38 (302)
T ss_dssp HHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhccc
Confidence 599999999998763
Done!