Query 017277
Match_columns 374
No_of_seqs 178 out of 1371
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 11:51:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017277.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017277hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tdja2 d.58.18.2 (A:336-423) 21.6 11 0.00081 27.1 0.5 13 320-334 5-17 (88)
2 d1tdja3 d.58.18.2 (A:424-514) 12.9 19 0.0014 25.9 -0.1 13 320-334 12-24 (91)
3 d1ik7a_ a.77.1.2 (A:) Pelle de 10.5 74 0.0054 20.2 2.2 30 335-364 11-42 (52)
4 d2e74g1 f.23.26.1 (G:9-35) Pet 8.8 77 0.0056 17.0 1.5 15 309-323 3-17 (27)
5 d1abaa_ c.47.1.1 (A:) Glutared 7.2 95 0.0069 21.1 1.9 23 38-61 56-79 (87)
6 d2r7ga2 a.74.1.3 (A:644-785) R 7.2 10 0.00074 29.9 -4.0 55 25-82 52-107 (142)
7 d2ckca1 d.76.2.1 (A:2563-2622) 6.2 21 0.0016 23.7 -2.1 12 44-55 26-37 (60)
8 d2ckaa1 d.76.2.1 (A:2028-2085) 4.6 31 0.0022 22.8 -2.1 12 44-55 28-39 (58)
9 d2v0fa1 d.76.2.1 (A:2629-2715) 4.6 47 0.0034 23.6 -1.3 26 44-73 38-63 (87)
10 d2gqba1 a.282.1.1 (A:1-130) Hy 4.4 1.3E+02 0.0093 22.7 1.1 9 80-88 103-111 (130)
No 1
>d1tdja2 d.58.18.2 (A:336-423) Allosteric threonine deaminase C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=21.65 E-value=11 Score=27.08 Aligned_cols=13 Identities=38% Similarity=0.726 Sum_probs=11.0
Q ss_pred hccccCCCcCCCCcc
Q 017277 320 FYVGRIPERWKPGAF 334 (374)
Q Consensus 320 fYa~r~PEr~~PG~F 334 (374)
+|+..+||| ||.|
T Consensus 5 l~~v~iPEr--pGaf 17 (88)
T d1tdja2 5 LLAVTIPEE--KGSF 17 (88)
T ss_dssp EEEEECCBS--SSCS
T ss_pred EEEEEcCCC--ccHH
Confidence 578899997 9976
No 2
>d1tdja3 d.58.18.2 (A:424-514) Allosteric threonine deaminase C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=12.93 E-value=19 Score=25.95 Aligned_cols=13 Identities=46% Similarity=0.887 Sum_probs=10.6
Q ss_pred hccccCCCcCCCCcc
Q 017277 320 FYVGRIPERWKPGAF 334 (374)
Q Consensus 320 fYa~r~PEr~~PG~F 334 (374)
+|+..+||| ||.|
T Consensus 12 l~~v~iPEr--pGal 24 (91)
T d1tdja3 12 LYSFEFPES--PGAL 24 (91)
T ss_dssp EEEEECCCC--TTHH
T ss_pred EEEEECCCC--ccHH
Confidence 678899997 9854
No 3
>d1ik7a_ a.77.1.2 (A:) Pelle death domain {Drosophila melanogaster [TaxId: 7227]}
Probab=10.49 E-value=74 Score=20.24 Aligned_cols=30 Identities=27% Similarity=0.391 Sum_probs=24.7
Q ss_pred ccCCc--hhhHHHHHHHHHHHHHHHHHHHHHH
Q 017277 335 DIAGH--SHQIFHVFVVLGALAHCAATLFIMD 364 (374)
Q Consensus 335 D~~G~--SHqifHifV~~g~~~h~~ai~~~~~ 364 (374)
++||+ .|.|.-+|+++.-.-|+.|+...-+
T Consensus 11 ~~Wg~q~NHTi~eLF~ll~~mk~~~aM~iiK~ 42 (52)
T d1ik7a_ 11 NIWGGQYNHTVQTLFALFKKLKLHNAMRLIKD 42 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 56776 8999999999999999999765433
No 4
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=8.81 E-value=77 Score=17.00 Aligned_cols=15 Identities=27% Similarity=0.417 Sum_probs=8.1
Q ss_pred HHHHHHHhhhhhccc
Q 017277 309 AMAVLYSVGAGFYVG 323 (374)
Q Consensus 309 ~~~~~y~~G~~fYa~ 323 (374)
++.++..+|..||+.
T Consensus 3 lgli~~tl~glf~aa 17 (27)
T d2e74g1 3 LGLVFATLGGLFYAA 17 (27)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHH
Confidence 344455566666653
No 5
>d1abaa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Bacteriophage T4 [TaxId: 10665]}
Probab=7.24 E-value=95 Score=21.13 Aligned_cols=23 Identities=13% Similarity=0.140 Sum_probs=15.1
Q ss_pred cccceeccCCCcccc-cCCcccCCc
Q 017277 38 EKRLVKFQELPDYMK-DNEYILDYY 61 (374)
Q Consensus 38 ~~~l~~~~elP~~~~-dN~yI~~GY 61 (374)
....-.+.-+|.-+. |.+|| .||
T Consensus 56 ~~~~~~~~TvPqIfi~dg~~I-GG~ 79 (87)
T d1abaa_ 56 GRDTQIGLTMPQVFAPDGSHI-GGF 79 (87)
T ss_dssp TCSCCTTCCSCEEECTTSCEE-ESH
T ss_pred cccCCCCceeCeEEecCCcEE-ECH
Confidence 334445678999986 55777 676
No 6
>d2r7ga2 a.74.1.3 (A:644-785) Retinoblastoma tumor suppressor domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.15 E-value=10 Score=29.89 Aligned_cols=55 Identities=15% Similarity=0.161 Sum_probs=41.4
Q ss_pred cccchhhHHHhhhcccceeccCCCcccccCCcccCCccC-CCCHHHHHHHHHHhhhhhH
Q 017277 25 SKNKKNDYMIMKKEKRLVKFQELPDYMKDNEYILDYYRC-EWPLKDACLSVFSWHNETL 82 (374)
Q Consensus 25 ~~~~~~~~~~~~~~~~l~~~~elP~~~~dN~yI~~GYR~-~~s~~~cl~SlF~~HNET~ 82 (374)
-.+|+.||..+-.........+++--++| |...||. +....+-.||++--.+|..
T Consensus 52 ~~dRHLDQiilCaiY~i~Kv~~~~~~F~~---Ii~~Yr~qPq~~~~vyR~V~i~~~e~~ 107 (142)
T d2r7ga2 52 MRDRHLDQIMMCSMYGICKVKNIDLKFKI---IVTAYKDLPHAVQETFKRVLIKEEEYD 107 (142)
T ss_dssp GTTSCHHHHHHHHHHHHHHHTTCCCCHHH---HHHHHTTSTTCCTHHHHSEECSSSCEE
T ss_pred HhccchhHHHHHHHHHHHHhccCCCCHHH---HHHHHHhCCccchhHhheeeeCCCCCC
Confidence 34588999887776666666777777777 9999997 5666677889887666764
No 7
>d2ckca1 d.76.2.1 (A:2563-2622) Chromodomain-helicase-DNA-binding protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.19 E-value=21 Score=23.74 Aligned_cols=12 Identities=17% Similarity=0.357 Sum_probs=10.1
Q ss_pred ccCCCcccccCC
Q 017277 44 FQELPDYMKDNE 55 (374)
Q Consensus 44 ~~elP~~~~dN~ 55 (374)
.++|.+|+++||
T Consensus 26 ~~~L~~WL~~hP 37 (60)
T d2ckca1 26 NKDLVEWLKLHP 37 (60)
T ss_dssp HHHHHHHHHHCT
T ss_pred HHHHHHHHHHCC
Confidence 457888999999
No 8
>d2ckaa1 d.76.2.1 (A:2028-2085) Chromodomain-helicase-dna-binding protein 8, CHD8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.63 E-value=31 Score=22.76 Aligned_cols=12 Identities=17% Similarity=0.276 Sum_probs=9.9
Q ss_pred ccCCCcccccCC
Q 017277 44 FQELPDYMKDNE 55 (374)
Q Consensus 44 ~~elP~~~~dN~ 55 (374)
.++|..|+++||
T Consensus 28 ~~~L~~WL~~nP 39 (58)
T d2ckaa1 28 RAELEMWLQGHP 39 (58)
T ss_dssp HHHHHHHHHHCT
T ss_pred HHHHHHHHHHCC
Confidence 357888999998
No 9
>d2v0fa1 d.76.2.1 (A:2629-2715) Chromodomain-helicase-DNA-binding protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.58 E-value=47 Score=23.64 Aligned_cols=26 Identities=15% Similarity=0.369 Sum_probs=18.3
Q ss_pred ccCCCcccccCCcccCCccCCCCHHHHHHH
Q 017277 44 FQELPDYMKDNEYILDYYRCEWPLKDACLS 73 (374)
Q Consensus 44 ~~elP~~~~dN~yI~~GYR~~~s~~~cl~S 73 (374)
.++|.+||++|| +|=..-.+.+|.++
T Consensus 38 ~~~L~~WL~~nP----~y~V~P~w~~~vk~ 63 (87)
T d2v0fa1 38 MKDLPRWLEENP----EFAVAPDWTDIVKQ 63 (87)
T ss_dssp GGGHHHHHHHCT----TEEECHHHHHHHHH
T ss_pred HHHHHHHHHHCC----CceeCccHHHHHhh
Confidence 468889999999 77654444566653
No 10
>d2gqba1 a.282.1.1 (A:1-130) Hypothetical protein RPA2825 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=4.38 E-value=1.3e+02 Score=22.70 Aligned_cols=9 Identities=44% Similarity=1.069 Sum_probs=7.0
Q ss_pred hhHHHHHHH
Q 017277 80 ETLNIWTHL 88 (374)
Q Consensus 80 ET~NIWTHl 88 (374)
-+.|||-|=
T Consensus 103 A~mNiwLhk 111 (130)
T d2gqba1 103 ASMNIWLHK 111 (130)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 368999883
Done!