BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017278
         (374 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1X19|A Chain A, Crystal Structure Of Bchu Involved In Bacteriochlorophyll
           C Biosynthesis
 pdb|1X1A|A Chain A, Crystal Structure Of Bchu Complexed With
           S-Adenosyl-L-Methionine
 pdb|1X1B|A Chain A, Crystal Structure Of Bchu Complexed With
           S-Adenosyl-L-Homocysteine
 pdb|1X1C|A Chain A, Crystal Structure Of Bchu Complexed With
           S-Adenosyl-L-Homocysteine And Zn2+
 pdb|1X1D|A Chain A, Crystal Structure Of Bchu Complexed With
           S-Adenosyl-L-Homocysteine And Zn-Bacteriopheophorbide D
          Length = 359

 Score = 30.0 bits (66), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 18/37 (48%)

Query: 154 YSGEEECDFRGTHRIELMKKEIDYNVLSHSKNGPKDL 190
           Y    E  F+G      MK  I+ ++ SH   GPKDL
Sbjct: 31  YHRANELVFKGLIEFSCMKAAIELDLFSHMAEGPKDL 67


>pdb|2NVO|A Chain A, Crystal Structure Of Deinococcus Radiodurans Ro (Rsr)
           Protein
          Length = 535

 Score = 28.5 bits (62), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 4/80 (5%)

Query: 276 VGSINKESVAAQEAEMGIMKILVKRTSVKAVFVGHNHGLDWCCPYQNLWLCFARHTGYGG 335
           +G++ +  V        +  ++ + T   A+  G  H LD         L +A+  G  G
Sbjct: 278 LGNLGRVGVLTPNDSATVQAVIERLTDPAALKRGRIHPLDAL----KARLVYAQGQGVRG 333

Query: 336 YGNWPRGARILEIMEQPFSL 355
            G W    R+++ +E+ F+L
Sbjct: 334 KGTWLPVPRVVDALEEAFTL 353


>pdb|2HIY|A Chain A, The Structure Of Conserved Bacterial Protein Sp0830 From
           Streptococcus Pneumoniae. (Casp Target)
 pdb|2HIY|B Chain B, The Structure Of Conserved Bacterial Protein Sp0830 From
           Streptococcus Pneumoniae. (Casp Target)
 pdb|2HIY|C Chain C, The Structure Of Conserved Bacterial Protein Sp0830 From
           Streptococcus Pneumoniae. (Casp Target)
 pdb|2HIY|D Chain D, The Structure Of Conserved Bacterial Protein Sp0830 From
           Streptococcus Pneumoniae. (Casp Target)
          Length = 183

 Score = 28.5 bits (62), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 2/97 (2%)

Query: 221 GGSYPEVISSAQAEWFRHKAEEINPDSRVPEIVFWHIPSKA--YKKVAPRFGVHKPCVGS 278
           GG    V +  + E      E++        I F  I SKA   +K+   F VH P + S
Sbjct: 17  GGKNKVVXAELRQELTNLGLEKVESYINSGNIFFTSIDSKAQLVEKLETFFAVHYPFIQS 76

Query: 279 INKESVAAQEAEMGIMKILVKRTSVKAVFVGHNHGLD 315
            +  S+   EAE+  +     R   +  F+ +  GLD
Sbjct: 77  FSLLSLEDFEAELENLPAWWSRDLARKDFLFYTEGLD 113


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.135    0.438 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,050,243
Number of Sequences: 62578
Number of extensions: 518745
Number of successful extensions: 957
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 956
Number of HSP's gapped (non-prelim): 4
length of query: 374
length of database: 14,973,337
effective HSP length: 100
effective length of query: 274
effective length of database: 8,715,537
effective search space: 2388057138
effective search space used: 2388057138
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)