Query 017278
Match_columns 374
No_of_seqs 198 out of 975
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 07:10:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017278.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017278hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1432 Predicted DNA repair e 100.0 9E-58 2E-62 434.2 26.0 311 14-366 10-366 (379)
2 PRK11148 cyclic 3',5'-adenosin 100.0 7.9E-30 1.7E-34 244.4 24.6 230 54-366 12-266 (275)
3 cd07383 MPP_Dcr2 Saccharomyces 100.0 2.9E-30 6.4E-35 235.8 17.5 182 55-337 1-199 (199)
4 cd07395 MPP_CSTP1 Homo sapiens 99.9 2.1E-23 4.4E-28 198.2 23.5 227 54-352 2-254 (262)
5 cd07396 MPP_Nbla03831 Homo sap 99.9 9.5E-23 2.1E-27 194.7 21.7 215 57-351 1-262 (267)
6 cd07402 MPP_GpdQ Enterobacter 99.9 9.2E-23 2E-27 190.4 20.9 215 58-352 1-239 (240)
7 TIGR03767 P_acnes_RR metalloph 99.8 9.5E-18 2.1E-22 169.4 20.6 159 163-351 256-432 (496)
8 cd07399 MPP_YvnB Bacillus subt 99.8 6.8E-18 1.5E-22 156.4 16.0 113 228-358 89-209 (214)
9 cd00839 MPP_PAPs purple acid p 99.7 9.5E-16 2.1E-20 147.6 23.5 148 210-373 116-293 (294)
10 COG1409 Icc Predicted phosphoh 99.7 6E-15 1.3E-19 140.4 23.7 213 57-351 1-246 (301)
11 cd07401 MPP_TMEM62_N Homo sapi 99.6 1.4E-14 3E-19 137.8 18.9 84 210-316 122-212 (256)
12 TIGR03768 RPA4764 metallophosp 99.6 9.9E-15 2.1E-19 146.4 18.6 178 163-358 259-461 (492)
13 cd07378 MPP_ACP5 Homo sapiens 99.6 5.8E-14 1.2E-18 134.2 20.6 119 210-351 119-266 (277)
14 cd07393 MPP_DR1119 Deinococcus 99.6 4.5E-14 9.8E-19 132.3 18.2 83 226-333 141-228 (232)
15 TIGR03729 acc_ester putative p 99.6 1.4E-13 3E-18 129.4 16.6 93 225-329 144-236 (239)
16 cd00842 MPP_ASMase acid sphing 99.5 1.4E-13 3.1E-18 133.0 14.7 113 210-344 168-296 (296)
17 cd07392 MPP_PAE1087 Pyrobaculu 99.5 1.2E-12 2.6E-17 117.0 16.6 94 211-325 87-184 (188)
18 PLN02533 probable purple acid 99.5 9.6E-12 2.1E-16 126.6 23.6 87 210-315 248-335 (427)
19 cd08163 MPP_Cdc1 Saccharomyces 99.3 5.2E-11 1.1E-15 113.5 15.9 103 210-321 124-233 (257)
20 cd07404 MPP_MS158 Microscilla 99.1 2.4E-10 5.3E-15 101.1 9.6 67 249-329 97-163 (166)
21 PTZ00422 glideosome-associated 99.1 1.4E-08 3.1E-13 101.5 22.8 139 210-371 173-326 (394)
22 PF00149 Metallophos: Calcineu 99.1 6.7E-11 1.4E-15 100.4 5.3 65 57-129 1-79 (200)
23 cd07400 MPP_YydB Bacillus subt 99.1 1.2E-09 2.5E-14 94.2 11.5 66 59-126 1-79 (144)
24 cd00840 MPP_Mre11_N Mre11 nucl 99.0 4.4E-09 9.6E-14 96.5 13.6 94 210-331 124-217 (223)
25 cd07388 MPP_Tt1561 Thermus the 98.9 6.3E-08 1.4E-12 90.5 17.9 61 56-128 4-75 (224)
26 TIGR00583 mre11 DNA repair pro 98.8 5E-07 1.1E-11 91.4 20.3 51 301-351 227-283 (405)
27 KOG1378 Purple acid phosphatas 98.7 9.8E-07 2.1E-11 89.1 18.3 148 210-372 255-435 (452)
28 KOG3770 Acid sphingomyelinase 98.7 8E-07 1.7E-11 91.8 17.0 130 210-361 314-459 (577)
29 PF12850 Metallophos_2: Calcin 98.7 2E-07 4.4E-12 80.5 10.5 55 293-350 101-155 (156)
30 PRK11340 phosphodiesterase Yae 98.6 9.3E-07 2E-11 84.8 15.1 65 55-128 48-125 (271)
31 cd07385 MPP_YkuE_C Bacillus su 98.5 4.2E-06 9.2E-11 77.0 16.0 66 56-129 1-77 (223)
32 PRK05340 UDP-2,3-diacylglucosa 98.5 6.5E-07 1.4E-11 84.3 10.5 58 291-355 177-235 (241)
33 cd07397 MPP_DevT Myxococcus xa 98.5 1.1E-05 2.4E-10 76.0 17.0 58 57-128 1-63 (238)
34 KOG2679 Purple (tartrate-resis 98.4 3.4E-06 7.5E-11 79.6 12.8 84 228-333 191-275 (336)
35 PRK10966 exonuclease subunit S 98.4 0.00011 2.5E-09 74.5 23.2 70 57-129 1-88 (407)
36 TIGR00040 yfcE phosphoesterase 98.3 1.1E-05 2.5E-10 70.7 13.1 56 293-350 97-152 (158)
37 cd08165 MPP_MPPE1 human MPPE1 98.3 6.1E-06 1.3E-10 72.8 11.0 66 60-128 1-89 (156)
38 PRK09453 phosphodiesterase; Pr 98.2 6.1E-05 1.3E-09 67.7 14.7 66 301-373 117-182 (182)
39 cd07394 MPP_Vps29 Homo sapiens 98.2 0.00033 7.1E-09 63.2 19.0 72 295-369 99-174 (178)
40 COG2129 Predicted phosphoester 98.1 0.00098 2.1E-08 61.8 20.3 100 226-351 117-217 (226)
41 COG2908 Uncharacterized protei 98.0 2.4E-05 5.1E-10 73.1 8.9 112 228-358 118-234 (237)
42 cd07379 MPP_239FB Homo sapiens 98.0 0.0001 2.3E-09 62.9 11.7 27 101-127 35-62 (135)
43 TIGR00619 sbcd exonuclease Sbc 98.0 1.3E-05 2.8E-10 76.2 6.2 70 57-129 1-89 (253)
44 cd07398 MPP_YbbF-LpxH Escheric 97.9 4.2E-05 9.2E-10 70.1 8.5 37 292-329 179-215 (217)
45 PF14582 Metallophos_3: Metall 97.9 0.00027 6E-09 65.6 13.2 26 103-128 77-102 (255)
46 PHA02546 47 endonuclease subun 97.8 3.1E-05 6.7E-10 76.8 5.7 69 57-128 1-89 (340)
47 cd00841 MPP_YfcE Escherichia c 97.7 0.00078 1.7E-08 58.5 13.2 49 300-350 100-148 (155)
48 cd07410 MPP_CpdB_N Escherichia 97.7 0.0046 1E-07 59.3 18.5 34 295-329 211-245 (277)
49 COG0420 SbcD DNA repair exonuc 97.6 0.00011 2.4E-09 73.9 6.0 70 57-129 1-89 (390)
50 cd07406 MPP_CG11883_N Drosophi 97.4 0.0069 1.5E-07 57.6 16.0 30 299-329 192-221 (257)
51 TIGR00024 SbcD_rel_arch putati 97.2 0.00045 9.7E-09 64.7 5.3 71 58-128 16-102 (225)
52 cd08166 MPP_Cdc1_like_1 unchar 97.2 0.0048 1E-07 56.5 11.6 69 60-128 1-93 (195)
53 cd00845 MPP_UshA_N_like Escher 97.1 0.068 1.5E-06 50.2 18.8 30 300-329 192-222 (252)
54 cd07391 MPP_PF1019 Pyrococcus 97.0 0.00089 1.9E-08 59.7 4.7 69 60-128 1-88 (172)
55 cd07384 MPP_Cdc1_like Saccharo 97.0 0.0014 3E-08 58.7 5.5 69 60-128 1-100 (171)
56 cd07408 MPP_SA0022_N Staphyloc 96.9 0.083 1.8E-06 50.1 17.2 69 57-128 1-82 (257)
57 TIGR01854 lipid_A_lpxH UDP-2,3 96.7 0.0027 5.7E-08 59.4 5.8 25 104-128 57-81 (231)
58 cd07386 MPP_DNA_pol_II_small_a 96.5 0.005 1.1E-07 57.9 6.3 63 60-129 2-95 (243)
59 COG1407 Predicted ICC-like pho 96.2 0.0059 1.3E-07 57.3 4.6 71 57-129 20-111 (235)
60 cd07403 MPP_TTHA0053 Thermus t 96.2 0.014 3.1E-07 49.6 6.5 24 292-316 82-105 (129)
61 COG1408 Predicted phosphohydro 96.1 0.0073 1.6E-07 58.6 5.0 65 55-129 43-119 (284)
62 cd07411 MPP_SoxB_N Thermus the 96.1 1.3 2.9E-05 42.0 21.3 31 298-329 203-236 (264)
63 PRK04036 DNA polymerase II sma 96.1 0.015 3.2E-07 60.8 7.4 27 303-330 441-467 (504)
64 PRK09419 bifunctional 2',3'-cy 96.1 0.4 8.7E-06 55.2 19.4 75 231-329 821-896 (1163)
65 cd07412 MPP_YhcR_N Bacillus su 96.0 0.62 1.3E-05 45.1 17.8 29 301-329 228-258 (288)
66 COG1768 Predicted phosphohydro 95.3 0.57 1.2E-05 42.4 13.2 72 231-328 141-217 (230)
67 cd07409 MPP_CD73_N CD73 ecto-5 95.3 1.1 2.3E-05 43.2 16.4 23 105-128 72-94 (281)
68 PRK09418 bifunctional 2',3'-cy 95.2 1.1 2.4E-05 49.4 17.8 32 297-329 272-303 (780)
69 cd07390 MPP_AQ1575 Aquifex aeo 95.2 0.027 5.9E-07 49.9 4.5 21 108-128 62-82 (168)
70 KOG2310 DNA repair exonuclease 94.5 0.026 5.7E-07 58.3 2.9 36 54-92 11-46 (646)
71 cd00838 MPP_superfamily metall 94.5 0.089 1.9E-06 42.6 5.6 20 108-127 51-70 (131)
72 PRK11907 bifunctional 2',3'-cy 94.4 2.9 6.3E-05 46.4 18.4 62 230-313 292-353 (814)
73 PRK09420 cpdB bifunctional 2', 93.9 4.2 9.2E-05 44.0 18.4 61 231-313 202-262 (649)
74 PHA02239 putative protein phos 93.7 0.15 3.3E-06 48.0 6.1 28 100-128 46-73 (235)
75 PRK09419 bifunctional 2',3'-cy 93.5 2.1 4.5E-05 49.5 16.1 22 293-314 259-280 (1163)
76 TIGR01390 CycNucDiestase 2',3' 93.1 6.3 0.00014 42.5 18.1 18 296-313 222-239 (626)
77 COG4186 Predicted phosphoester 92.4 0.33 7.1E-06 42.9 5.8 68 58-128 5-86 (186)
78 PRK09558 ushA bifunctional UDP 92.2 6.5 0.00014 41.6 16.5 68 55-128 33-121 (551)
79 cd07405 MPP_UshA_N Escherichia 91.3 14 0.00031 35.5 16.9 22 106-128 66-87 (285)
80 TIGR01530 nadN NAD pyrophospha 90.9 9 0.0002 40.6 16.0 17 297-313 201-217 (550)
81 cd07403 MPP_TTHA0053 Thermus t 88.5 0.61 1.3E-05 39.5 4.0 14 114-127 44-57 (129)
82 cd00838 MPP_superfamily metall 87.8 1.1 2.3E-05 36.1 5.0 24 293-316 94-117 (131)
83 cd07407 MPP_YHR202W_N Saccharo 87.4 29 0.00063 33.5 16.7 23 105-128 75-97 (282)
84 COG1311 HYS2 Archaeal DNA poly 87.1 2.1 4.5E-05 44.2 7.5 28 102-129 293-322 (481)
85 COG0622 Predicted phosphoester 86.1 0.86 1.9E-05 40.9 3.8 58 292-351 99-156 (172)
86 PRK00166 apaH diadenosine tetr 84.8 1.7 3.7E-05 41.9 5.4 23 106-128 47-69 (275)
87 KOG3662 Cell division control 84.6 2.3 5E-05 43.2 6.3 74 55-128 47-144 (410)
88 cd08164 MPP_Ted1 Saccharomyces 84.5 2.3 4.9E-05 39.0 5.7 14 115-128 98-111 (193)
89 cd07387 MPP_PolD2_C PolD2 (DNA 83.7 4.2 9.1E-05 38.9 7.4 27 103-129 80-108 (257)
90 smart00854 PGA_cap Bacterial c 81.9 34 0.00074 31.8 12.9 36 292-328 196-231 (239)
91 cd07381 MPP_CapA CapA and rela 80.4 43 0.00093 31.0 13.0 35 293-328 199-233 (239)
92 cd07424 MPP_PrpA_PrpB PrpA and 78.4 3.4 7.3E-05 37.7 4.7 21 106-128 47-67 (207)
93 PF09423 PhoD: PhoD-like phosp 76.2 14 0.0003 38.0 9.0 112 210-332 262-407 (453)
94 TIGR01854 lipid_A_lpxH UDP-2,3 75.3 6.4 0.00014 36.6 5.7 53 293-351 176-229 (231)
95 KOG3325 Membrane coat complex 74.3 20 0.00044 31.6 8.0 75 291-369 96-176 (183)
96 cd07423 MPP_PrpE Bacillus subt 73.9 3.9 8.5E-05 38.1 3.9 16 300-315 179-194 (234)
97 COG0737 UshA 5'-nucleotidase/2 71.8 1.1E+02 0.0024 32.0 14.6 81 226-329 182-266 (517)
98 cd00144 MPP_PPP_family phospho 70.9 5.7 0.00012 36.2 4.2 24 293-316 171-194 (225)
99 COG0622 Predicted phosphoester 70.2 12 0.00027 33.5 6.1 60 56-129 1-66 (172)
100 cd07422 MPP_ApaH Escherichia c 68.6 9 0.0002 36.6 5.1 23 106-128 45-67 (257)
101 PRK11439 pphA serine/threonine 68.2 8.5 0.00018 35.5 4.7 13 302-314 179-191 (218)
102 PRK09968 serine/threonine-spec 67.4 10 0.00022 35.0 5.1 32 301-334 178-209 (218)
103 cd07425 MPP_Shelphs Shewanella 65.3 8.4 0.00018 35.4 4.1 18 298-315 163-180 (208)
104 PRK13625 bis(5'-nucleosyl)-tet 55.2 29 0.00062 32.6 5.9 27 100-128 53-79 (245)
105 PF04042 DNA_pol_E_B: DNA poly 51.7 18 0.00039 32.7 3.8 61 59-129 1-92 (209)
106 cd07421 MPP_Rhilphs Rhilph pho 48.2 31 0.00066 33.9 4.9 35 227-261 171-214 (304)
107 cd08162 MPP_PhoA_N Synechococc 47.7 45 0.00098 32.7 6.1 17 297-313 227-243 (313)
108 PTZ00235 DNA polymerase epsilo 47.4 68 0.0015 31.3 7.1 67 50-127 21-121 (291)
109 TIGR00668 apaH bis(5'-nucleosy 46.0 32 0.00069 33.4 4.6 21 108-128 49-69 (279)
110 cd00844 MPP_Dbr1_N Dbr1 RNA la 35.2 24 0.00052 33.8 1.9 23 106-128 64-86 (262)
111 PRK09968 serine/threonine-spec 30.9 54 0.0012 30.2 3.5 11 57-67 15-25 (218)
112 PF09587 PGA_cap: Bacterial ca 30.8 4.4E+02 0.0096 24.5 12.7 76 230-328 167-242 (250)
113 COG5555 Cytolysin, a secreted 30.1 41 0.0009 32.8 2.5 80 230-314 252-334 (392)
114 KOG0074 GTP-binding ADP-ribosy 29.3 26 0.00057 30.8 1.0 41 211-256 87-127 (185)
115 PRK15367 type III secretion sy 24.0 2.1E+02 0.0046 29.2 6.4 85 226-352 295-379 (395)
116 smart00156 PP2Ac Protein phosp 22.7 2.5E+02 0.0053 26.9 6.5 30 100-129 71-100 (271)
117 cd07384 MPP_Cdc1_like Saccharo 22.0 58 0.0013 28.8 1.9 20 105-124 35-54 (171)
118 PHA02546 47 endonuclease subun 21.4 1.4E+02 0.003 29.5 4.6 24 101-124 25-48 (340)
119 PF10994 DUF2817: Protein of u 20.3 1.5E+02 0.0033 29.5 4.6 53 212-267 51-104 (341)
120 cd07413 MPP_PA3087 Pseudomonas 20.1 91 0.002 28.8 2.8 27 100-128 50-76 (222)
No 1
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=100.00 E-value=9e-58 Score=434.22 Aligned_cols=311 Identities=34% Similarity=0.583 Sum_probs=253.4
Q ss_pred hhHHHHHHhhhhhccCCCCC--CCCCCccCCCC-CCCceeecCCCCeEEEEEecCCCCCC---CCCCCCCCC-----Chh
Q 017278 14 LNLYVHLQAVLTVGFAFGQP--QETIGLRTTPE-NDHLRMRAAGGPFKISLFADLHFGEN---AWTDWGPLQ-----DFN 82 (374)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~l~f~~~~g~fkI~QlTDlHl~~~---~~~~~g~~~-----d~~ 82 (374)
+.+++++++|+++.+..... ..++ .+.... .-+|+|+. +|+|||+|+||+|++.+ .|.|+.|.+ |.+
T Consensus 10 ~~i~~~~~~v~~~~s~~~~l~i~~~~-~r~~~~~~~~lr~~~-~g~fKIlqvaDlH~g~g~~~~c~d~~p~~~~~csD~n 87 (379)
T KOG1432|consen 10 RFIYLGFLIVSLRYSWEPSLCISTTG-IREVDNGRLKLRFRE-DGTFKILQVADLHFGFGRETRCRDVLPSEEACCSDLN 87 (379)
T ss_pred hhhhhcceEEEEeccCCCccceeecc-cccccCcceeeeecC-CCceEEEEeeccccccCCCccccccCcchhhhhcCcc
Confidence 45677777877777654211 1111 111111 22588888 89999999999999988 677777755 999
Q ss_pred HHHHHHHHhcccCC--------------CCCHHHHHHHHHhhHHHcCCCEEEecCCCCCCCCCCCCccccCCCCCccccC
Q 017278 83 SVKVMSTVLDHETP--------------VANASLYWDQAISPTRVRGIPWASIFGNHDDAPFEWPLDWFSDSGIPQLFCP 148 (374)
Q Consensus 83 t~~~l~~vL~~e~P--------------i~~~~~~~~~~~~~l~~~~iP~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~ 148 (374)
|..+|.++|+.|+| ++|+.+.+.++++|+.+++|||++++||||++++
T Consensus 88 Tt~F~~rvL~sE~PDlVVfTGD~i~g~~t~Da~~sl~kAvaP~I~~~IPwA~~lGNHDdes~------------------ 149 (379)
T KOG1432|consen 88 TTNFVSRVLASEKPDLVVFTGDNIFGHSTQDAATSLMKAVAPAIDRKIPWAAVLGNHDDESD------------------ 149 (379)
T ss_pred HHHHHHHHHhccCCCEEEEeCCcccccccHhHHHHHHHHhhhHhhcCCCeEEEecccccccc------------------
Confidence 99999999999999 1367889999999999999999999999999863
Q ss_pred CCCCCCCCccccccccccHHHHHHHhhhcccccCcCCCCCCCC----CCccceEEEEecCCCcC---CceEEEEEEeCCC
Q 017278 149 AVNSSYSGEEECDFRGTHRIELMKKEIDYNVLSHSKNGPKDLW----PSISNYVLQVSSSHDRQ---MAVAYMYFLDSGG 221 (374)
Q Consensus 149 ~~~~~~~~~~~~~f~~~~r~~lm~~~~~~~~~s~~~~~p~~~~----~g~~ny~l~v~~~~~~~---~~~~~L~~LDS~~ 221 (374)
++|+++|+. +...|+|+++..|.+-. .|++||.+++++..++. .++..||||||+.
T Consensus 150 ----------------ltr~ql~~~-i~~lP~s~~~v~p~dg~~~~~~g~gnyn~~i~~~~ds~~~~~sv~~lyfld~~~ 212 (379)
T KOG1432|consen 150 ----------------LTRLQLMKF-ISKLPYSLSQVNPPDGHMYIIDGFGNYNLQIEGAIDSELENKSVFNLYFLDSSS 212 (379)
T ss_pred ----------------cCHHHHHHH-HhcCCCccccCCCcccceeeeecccceEEEeccCCCcccccCceeeEEEEecCC
Confidence 679999986 55678899887665432 58899999998765543 4589999999997
Q ss_pred CC-----C--CCCCCHHHHHHHHHHHhhhC----CCCCCCeEEEEccCccccccccccCCCCCCccCcccccchhhhhhh
Q 017278 222 GS-----Y--PEVISSAQAEWFRHKAEEIN----PDSRVPEIVFWHIPSKAYKKVAPRFGVHKPCVGSINKESVAAQEAE 290 (374)
Q Consensus 222 g~-----~--~g~I~~~Ql~WL~~~l~~~~----~~~~~p~LvF~HhP~~~~~~~~~~~g~~~~~~g~~n~e~v~~~~~n 290 (374)
+. + .+||..+|++||+.+..+.. +....|.|+|+|||++|+..++.+ .+..| .+.|.++++..|
T Consensus 213 ~~s~~~~~~~Ydwik~sq~~wl~~~~~~~~~~~~~~~P~p~La~~HIP~~E~~~~~~~----tp~~g-~~~E~~~~~~~~ 287 (379)
T KOG1432|consen 213 YTSVPPLLPGYDWIKESQLEWLSDTSKEFKEPNSKYNPQPGLAFFHIPLPEFLELESK----TPLIG-VFQEGVSASKHN 287 (379)
T ss_pred cccccccccCccchhhhhHHHHhhhhhhhhcccCccCCCCceEEEEcccHHHhhccCC----Ccccc-eeeccccccccc
Confidence 43 1 27999999999999984421 112238999999999999988763 23444 568999999999
Q ss_pred hHHHHHHHhCCCceEEEeCcccCCCccccCCC-eEEEEeCCccCCCCC--CCCCeeEEEEEEcCCCceEEEEEccCCcE
Q 017278 291 MGIMKILVKRTSVKAVFVGHNHGLDWCCPYQN-LWLCFARHTGYGGYG--NWPRGARILEIMEQPFSLKSWIRMEDGSV 366 (374)
Q Consensus 291 ~~l~~~L~~~~~Vkaif~GH~H~nd~~~~~~G-I~l~~~~~tgy~~yg--~~~rG~R~iel~~~~~~i~Tw~R~~~g~~ 366 (374)
++++.+|.++.+||++||||+|.||||+.++| +|||||+++||++|| +|.|++|+||++..+..|+||+|++|+..
T Consensus 288 sg~~~~L~~r~~Vk~vf~GHdHvNDfC~~~k~~~wlCygGgaGyggYg~~gw~Rr~Rv~e~d~~~~~IkTWKRl~d~~~ 366 (379)
T KOG1432|consen 288 SGFLTTLVNRGNVKGVFCGHDHVNDFCGELKGELWLCYGGGAGYGGYGIGGWERRARVFELDLNKDRIKTWKRLDDKPL 366 (379)
T ss_pred cHHHHHHHhccCcceEEeccccccceecccCCeEEEEecCCCccCCcCcCCcccceEEEEccccccccceeeecCCCCc
Confidence 99999999889999999999999999999999 999999999999998 59999999999999999999999999854
No 2
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=99.97 E-value=7.9e-30 Score=244.41 Aligned_cols=230 Identities=20% Similarity=0.178 Sum_probs=162.0
Q ss_pred CCCeEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHhcc---c--CC--------CC-C-HHHHHHHHHhhHHHcCCCE
Q 017278 54 GGPFKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDH---E--TP--------VA-N-ASLYWDQAISPTRVRGIPW 118 (374)
Q Consensus 54 ~g~fkI~QlTDlHl~~~~~~~~g~~~d~~t~~~l~~vL~~---e--~P--------i~-~-~~~~~~~~~~~l~~~~iP~ 118 (374)
.++|||+||||+|+..... +...+.++.+.++++++. . +| +. + ..+.|+++.+.|.++++|+
T Consensus 12 ~~~~~i~~iSD~Hl~~~~~---~~~~~~~~~~~l~~~i~~i~~~~~~~D~vvitGDl~~~~~~~~~~~~~~~l~~l~~Pv 88 (275)
T PRK11148 12 EARVRILQITDTHLFADEH---ETLLGVNTWESYQAVLEAIRAQQHEFDLIVATGDLAQDHSSEAYQHFAEGIAPLRKPC 88 (275)
T ss_pred CCCEEEEEEcCcccCCCCC---CceeccCHHHHHHHHHHHHHhhCCCCCEEEECCCCCCCCCHHHHHHHHHHHhhcCCcE
Confidence 4679999999999965432 233356677777777762 2 35 12 2 4678999999999999999
Q ss_pred EEecCCCCCCCCCCCCccccCCCCCccccCCCCCCCCCccccccccccHHHHHHHhhhcccccCcCCCCCCCCCCccceE
Q 017278 119 ASIFGNHDDAPFEWPLDWFSDSGIPQLFCPAVNSSYSGEEECDFRGTHRIELMKKEIDYNVLSHSKNGPKDLWPSISNYV 198 (374)
Q Consensus 119 ~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~r~~lm~~~~~~~~~s~~~~~p~~~~~g~~ny~ 198 (374)
++++||||.... +...+.... + + ..+.
T Consensus 89 ~~v~GNHD~~~~----------------------------------------~~~~~~~~~--~----------~-~~~~ 115 (275)
T PRK11148 89 VWLPGNHDFQPA----------------------------------------MYSALQDAG--I----------S-PAKH 115 (275)
T ss_pred EEeCCCCCChHH----------------------------------------HHHHHhhcC--C----------C-ccce
Confidence 999999997530 111111000 0 0 0111
Q ss_pred EEEecCCCcCCceEEEEEEeCCC-CCCCCCCCHHHHHHHHHHHhhhCCCCCCCeEEEEccCccccccccccCCCCCCccC
Q 017278 199 LQVSSSHDRQMAVAYMYFLDSGG-GSYPEVISSAQAEWFRHKAEEINPDSRVPEIVFWHIPSKAYKKVAPRFGVHKPCVG 277 (374)
Q Consensus 199 l~v~~~~~~~~~~~~L~~LDS~~-g~~~g~I~~~Ql~WL~~~l~~~~~~~~~p~LvF~HhP~~~~~~~~~~~g~~~~~~g 277 (374)
+.. .+.|++++|||.. |...|+|+++|++||+++|++.+ .++.+||+||||......|.+ .. +
T Consensus 116 ~~~-------~~~~~~i~Lds~~~g~~~G~l~~~ql~wL~~~L~~~~---~~~~vv~~hH~P~~~~~~~~d----~~--~ 179 (275)
T PRK11148 116 VLI-------GEHWQILLLDSQVFGVPHGELSEYQLEWLERKLADAP---ERHTLVLLHHHPLPAGCAWLD----QH--S 179 (275)
T ss_pred EEe-------cCCEEEEEecCCCCCCcCCEeCHHHHHHHHHHHhhCC---CCCeEEEEcCCCCCCCcchhh----cc--C
Confidence 111 2468999999986 55568999999999999999865 367889999887654444431 11 1
Q ss_pred cccccchhhhhhhhHHHHHHHhCCCceEEEeCcccCCCccccCCCeEEEEeCCccCC--------CCCCCCCeeEEEEEE
Q 017278 278 SINKESVAAQEAEMGIMKILVKRTSVKAVFVGHNHGLDWCCPYQNLWLCFARHTGYG--------GYGNWPRGARILEIM 349 (374)
Q Consensus 278 ~~n~e~v~~~~~n~~l~~~L~~~~~Vkaif~GH~H~nd~~~~~~GI~l~~~~~tgy~--------~yg~~~rG~R~iel~ 349 (374)
..|. .+|+++|.++++|+++||||+|+ +++..+.||.++.+|++|+. ++.+..+|||+++|+
T Consensus 180 l~n~---------~~l~~ll~~~~~v~~vl~GH~H~-~~~~~~~gi~~~~~ps~~~q~~~~~~~~~~~~~~~g~~~~~l~ 249 (275)
T PRK11148 180 LRNA---------HELAEVLAKFPNVKAILCGHIHQ-ELDLDWNGRRLLATPSTCVQFKPHCTNFTLDTVAPGWRELELH 249 (275)
T ss_pred CCCH---------HHHHHHHhcCCCceEEEecccCh-HHhceECCEEEEEcCCCcCCcCCCCCccccccCCCcEEEEEEc
Confidence 1121 46888888888999999999998 67788999999999999962 233567899999998
Q ss_pred cCCCceEE-EEEccCCcE
Q 017278 350 EQPFSLKS-WIRMEDGSV 366 (374)
Q Consensus 350 ~~~~~i~T-w~R~~~g~~ 366 (374)
++ +++.| ++|++++..
T Consensus 250 ~~-g~~~~~~~~~~~~~~ 266 (275)
T PRK11148 250 AD-GSLETEVHRLADTEF 266 (275)
T ss_pred CC-CcEEEEEEEcCCCCc
Confidence 87 46666 579988643
No 3
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=99.97 E-value=2.9e-30 Score=235.81 Aligned_cols=182 Identities=42% Similarity=0.804 Sum_probs=147.9
Q ss_pred CCeEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHhcccCC--------C-CC------HHHHHHHHHhhHHHcCCCEE
Q 017278 55 GPFKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHETP--------V-AN------ASLYWDQAISPTRVRGIPWA 119 (374)
Q Consensus 55 g~fkI~QlTDlHl~~~~~~~~g~~~d~~t~~~l~~vL~~e~P--------i-~~------~~~~~~~~~~~l~~~~iP~~ 119 (374)
++|||+||||+|++......++...+.++.+.|++++++++| + .+ +...+.+++++|...++|++
T Consensus 1 ~~~ki~~isDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vv~~GDl~~~~~~~~~~~~~~~~~~~~l~~~~~p~~ 80 (199)
T cd07383 1 GKFKILQFADLHFGEGEGTCEGCEADLKTVAFIERVLDAEKPDLVVLTGDLITGENTNDNSTSALDKAVSPMIDRKIPWA 80 (199)
T ss_pred CceEEEEEeeecccCCCCCCCcchhhHHHHHHHHHHHhhcCCCEEEECCccccCCCCchHHHHHHHHHHHHHHHcCCCEE
Confidence 579999999999988754323345567899999999998888 1 11 24467788888888899999
Q ss_pred EecCCCCCCCCCCCCccccCCCCCccccCCCCCCCCCccccccccccHHHHHHHhhhcccccCcCCCCCCCCCCccceEE
Q 017278 120 SIFGNHDDAPFEWPLDWFSDSGIPQLFCPAVNSSYSGEEECDFRGTHRIELMKKEIDYNVLSHSKNGPKDLWPSISNYVL 199 (374)
Q Consensus 120 ~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~r~~lm~~~~~~~~~s~~~~~p~~~~~g~~ny~l 199 (374)
+++||||..
T Consensus 81 ~~~GNHD~~----------------------------------------------------------------------- 89 (199)
T cd07383 81 ATFGNHDGY----------------------------------------------------------------------- 89 (199)
T ss_pred EECccCCCC-----------------------------------------------------------------------
Confidence 999999931
Q ss_pred EEecCCCcCCceEEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhhC--CCCCCCeEEEEccCccccccccccCCCCCCccC
Q 017278 200 QVSSSHDRQMAVAYMYFLDSGGGSYPEVISSAQAEWFRHKAEEIN--PDSRVPEIVFWHIPSKAYKKVAPRFGVHKPCVG 277 (374)
Q Consensus 200 ~v~~~~~~~~~~~~L~~LDS~~g~~~g~I~~~Ql~WL~~~l~~~~--~~~~~p~LvF~HhP~~~~~~~~~~~g~~~~~~g 277 (374)
|+++++|++||+++++++. .+..+|.|+|+|||++++.+.|.. ...+.|
T Consensus 90 --------------------------g~l~~~ql~wL~~~l~~~~~~~~~~~~~l~f~H~P~~~~~~~~~~---~~~~~g 140 (199)
T cd07383 90 --------------------------DWIRPSQIEWFKETSAALKKKYGKPIPSLAFFHIPLPEYREVWEG---KGKVPG 140 (199)
T ss_pred --------------------------CCCCHHHHHHHHHHHHHHhhccCCCCcceEEEecChHHHHhhhcc---cCCCCc
Confidence 4688999999999999874 123579999999999999887752 122334
Q ss_pred cccccchhhhhhhhHHHHHHHhCCCceEEEeCcccCCCccccCCCeEEEEeCCccCCCCC
Q 017278 278 SINKESVAAQEAEMGIMKILVKRTSVKAVFVGHNHGLDWCCPYQNLWLCFARHTGYGGYG 337 (374)
Q Consensus 278 ~~n~e~v~~~~~n~~l~~~L~~~~~Vkaif~GH~H~nd~~~~~~GI~l~~~~~tgy~~yg 337 (374)
. +.|...+...++++++.|.+.++|+++||||+|+|++|..++||++|+|+.|||++||
T Consensus 141 ~-~~d~~~~~~~~~~~~~~~~~~~~v~~v~~GH~H~~~~~~~~~~i~l~~g~~~g~~~y~ 199 (199)
T cd07383 141 I-NNEKVCCPKINSGLFKALLERGDVKGVFCGHDHGNDFCGRYNGIWLCYGRGTGYGGYG 199 (199)
T ss_pred c-CCcccCCCcCCcHHHHHHHHcCCeEEEEeCCCCCcceecccCCEEEeCCCCCCCCCCC
Confidence 3 4566667778889999999999999999999999999999999999999999999997
No 4
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=99.92 E-value=2.1e-23 Score=198.20 Aligned_cols=227 Identities=22% Similarity=0.215 Sum_probs=144.4
Q ss_pred CCCeEEEEEecCCCCCCCCC-CCCCCCChhHHHHHHHHhc---cc--CC--------CC-C--H----HHHHHHHHhhHH
Q 017278 54 GGPFKISLFADLHFGENAWT-DWGPLQDFNSVKVMSTVLD---HE--TP--------VA-N--A----SLYWDQAISPTR 112 (374)
Q Consensus 54 ~g~fkI~QlTDlHl~~~~~~-~~g~~~d~~t~~~l~~vL~---~e--~P--------i~-~--~----~~~~~~~~~~l~ 112 (374)
+++|+++|+||+|++..... ..+......+...++++++ +. +| +. + . ...++.+.+.+.
T Consensus 2 ~~~~~f~~~sD~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~pd~ii~~GDl~~~~~~~~~~~~~~~~~~~~~~ 81 (262)
T cd07395 2 SGPFYFIQGADPQLGLIKKNLEGGGDEWDEEIKLTEQAVQAINKLNPKPKFVVVCGDLVNAMPGDELRERQVSDLKDVLS 81 (262)
T ss_pred CCCEEEEEecCCccchhhccccCchhhhhhHHHHHHHHHHHHHhcCCCCCEEEEeCCcCCCCcchhhHHHHHHHHHHHHh
Confidence 57899999999999963211 0111122344445555554 33 56 11 1 1 134566777777
Q ss_pred Hc--CCCEEEecCCCCCCCCCCCCccccCCCCCccccCCCCCCCCCccccccccccHHHHHHHhhhcccccCcCCCCCCC
Q 017278 113 VR--GIPWASIFGNHDDAPFEWPLDWFSDSGIPQLFCPAVNSSYSGEEECDFRGTHRIELMKKEIDYNVLSHSKNGPKDL 190 (374)
Q Consensus 113 ~~--~iP~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~r~~lm~~~~~~~~~s~~~~~p~~~ 190 (374)
.. ++|+++++||||.... + ..+.++...+.
T Consensus 82 ~~~~~vp~~~i~GNHD~~~~-------------------~----------------~~~~~~~f~~~------------- 113 (262)
T cd07395 82 LLDPDIPLVCVCGNHDVGNT-------------------P----------------TEESIKDYRDV------------- 113 (262)
T ss_pred hccCCCcEEEeCCCCCCCCC-------------------C----------------ChhHHHHHHHH-------------
Confidence 65 7999999999997521 0 00111110110
Q ss_pred CCCccceEEEEecCCCcCCceEEEEEEeCCCCC-C--CCCCCHHHHHHHHHHHhhhCCCCCCCeEEEEccCccccccccc
Q 017278 191 WPSISNYVLQVSSSHDRQMAVAYMYFLDSGGGS-Y--PEVISSAQAEWFRHKAEEINPDSRVPEIVFWHIPSKAYKKVAP 267 (374)
Q Consensus 191 ~~g~~ny~l~v~~~~~~~~~~~~L~~LDS~~g~-~--~g~I~~~Ql~WL~~~l~~~~~~~~~p~LvF~HhP~~~~~~~~~ 267 (374)
.|...|.... +.+++++|||.... . .+.+..+|++||+++|++.++...++++||+|||+........
T Consensus 114 -~g~~~y~~~~--------~~~~~i~lds~~~~~~~~~~~~~~~ql~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~ 184 (262)
T cd07395 114 -FGDDYFSFWV--------GGVFFIVLNSQLFFDPSEVPELAQAQDVWLEEQLEIAKESDCKHVIVFQHIPWFLEDPDEE 184 (262)
T ss_pred -hCCcceEEEE--------CCEEEEEeccccccCccccccchHHHHHHHHHHHHHHHhccCCcEEEEECcCCccCCCCCC
Confidence 1212344432 46889999997521 1 1468999999999999987522357899999999975322111
Q ss_pred cCCCCCCccCcccccchhhhhhhhHHHHHHHhCCCceEEEeCcccCCCccccCCCeEEEEeCCccCCCCCCCCCeeEEEE
Q 017278 268 RFGVHKPCVGSINKESVAAQEAEMGIMKILVKRTSVKAVFVGHNHGLDWCCPYQNLWLCFARHTGYGGYGNWPRGARILE 347 (374)
Q Consensus 268 ~~g~~~~~~g~~n~e~v~~~~~n~~l~~~L~~~~~Vkaif~GH~H~nd~~~~~~GI~l~~~~~tgy~~yg~~~rG~R~ie 347 (374)
+ ..++. .......+.++|.+ .+|+++||||+|.+.. ..+.|+.++.++++|+ .+++..+|+|+++
T Consensus 185 ~--------~~~~~----~~~~~~~l~~ll~~-~~V~~v~~GH~H~~~~-~~~~g~~~~~~~~~~~-~~~~~~~g~~~~~ 249 (262)
T cd07395 185 D--------SYFNI----PKSVRKPLLDKFKK-AGVKAVFSGHYHRNAG-GRYGGLEMVVTSAIGA-QLGNDKSGLRIVK 249 (262)
T ss_pred c--------ccCCc----CHHHHHHHHHHHHh-cCceEEEECccccCCc-eEECCEEEEEcCceec-ccCCCCCCcEEEE
Confidence 0 00110 00122457777765 5999999999999776 6789999999999996 5677789999999
Q ss_pred EEcCC
Q 017278 348 IMEQP 352 (374)
Q Consensus 348 l~~~~ 352 (374)
+++++
T Consensus 250 v~~~~ 254 (262)
T cd07395 250 VTEDK 254 (262)
T ss_pred ECCCc
Confidence 98763
No 5
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.91 E-value=9.5e-23 Score=194.72 Aligned_cols=215 Identities=18% Similarity=0.211 Sum_probs=146.3
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHhc---ccCC--------C-CC-H---HHHHHHHHhhHHHcCCCEEE
Q 017278 57 FKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLD---HETP--------V-AN-A---SLYWDQAISPTRVRGIPWAS 120 (374)
Q Consensus 57 fkI~QlTDlHl~~~~~~~~g~~~d~~t~~~l~~vL~---~e~P--------i-~~-~---~~~~~~~~~~l~~~~iP~~~ 120 (374)
|||+|+||+|++..... ......++...++++++ +.+| + .+ . ...|+.+.+++.++++|+++
T Consensus 1 ~r~~~iSD~H~~~~~~~--~~~~~~~~~~~l~~~i~~i~~~~~d~vv~~GDlv~~~~~~~~~~~~~~~~~l~~l~~p~~~ 78 (267)
T cd07396 1 FRFGIIADIQYADEDDT--RPRYYRNSLEKLEEAVEEWNRESLDFVVQLGDIIDGDNARAEEALDAVLAILDRLKGPVHH 78 (267)
T ss_pred CeEEEEeccccccCCCc--ccchHHHhHHHHHHHHHHHHcCCCCEEEECCCeecCCCchHHHHHHHHHHHHHhcCCCEEE
Confidence 79999999998765311 11223455556655554 3557 1 22 2 27799999999999999999
Q ss_pred ecCCCCCCCCCCCCccccCCCCCccccCCCCCCCCCccccccccccHHHHHHHhhhcccccCcCCCCCCCCCCccceEEE
Q 017278 121 IFGNHDDAPFEWPLDWFSDSGIPQLFCPAVNSSYSGEEECDFRGTHRIELMKKEIDYNVLSHSKNGPKDLWPSISNYVLQ 200 (374)
Q Consensus 121 v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~r~~lm~~~~~~~~~s~~~~~p~~~~~g~~ny~l~ 200 (374)
+|||||.... ... .+.. . + ... .+...|.+.
T Consensus 79 v~GNHD~~~~-----------------------------------~~~-~~~~--~-----~----~~~--~~~~yysf~ 109 (267)
T cd07396 79 VLGNHDLYNP-----------------------------------SRE-YLLL--Y-----T----LLG--LGAPYYSFS 109 (267)
T ss_pred ecCccccccc-----------------------------------cHh-hhhc--c-----c----ccC--CCCceEEEe
Confidence 9999998641 000 0100 0 0 000 122334443
Q ss_pred EecCCCcCCceEEEEEEeCCCCC-------------------------------CCCCCCHHHHHHHHHHHhhhCCCCCC
Q 017278 201 VSSSHDRQMAVAYMYFLDSGGGS-------------------------------YPEVISSAQAEWFRHKAEEINPDSRV 249 (374)
Q Consensus 201 v~~~~~~~~~~~~L~~LDS~~g~-------------------------------~~g~I~~~Ql~WL~~~l~~~~~~~~~ 249 (374)
. ..+++++|||...+ +.|.|+++|++||+++|++.++ ...
T Consensus 110 ~--------~~~~~i~lds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~Ql~WL~~~L~~~~~-~~~ 180 (267)
T cd07396 110 P--------GGIRFIVLDGYDISALGRPEDTPKAENADDNSNLGLYLSEPRFVDWNGGIGEEQLQWLRNELQEADA-NGE 180 (267)
T ss_pred c--------CCcEEEEEeCCccccccCCCCChhhhhHHHhchhhhhccCccceeccCcCCHHHHHHHHHHHHHHHh-cCC
Confidence 2 36899999996411 2478999999999999998653 246
Q ss_pred CeEEEEccCccccccccccCCCCCCccCcccccchhhhhhhhHHHHHHHhCCCceEEEeCcccCCCccccCCCeEEEEeC
Q 017278 250 PEIVFWHIPSKAYKKVAPRFGVHKPCVGSINKESVAAQEAEMGIMKILVKRTSVKAVFVGHNHGLDWCCPYQNLWLCFAR 329 (374)
Q Consensus 250 p~LvF~HhP~~~~~~~~~~~g~~~~~~g~~n~e~v~~~~~n~~l~~~L~~~~~Vkaif~GH~H~nd~~~~~~GI~l~~~~ 329 (374)
+++||+|||+..... .. . ....|. ..+.++|.++++|+++||||+|.+.. ..+.||.+..+|
T Consensus 181 ~viV~~Hhp~~~~~~-~~-----~--~~~~~~---------~~~~~ll~~~~~V~~v~~GH~H~~~~-~~~~gi~~~~~~ 242 (267)
T cd07396 181 KVIIFSHFPLHPEST-SP-----H--GLLWNH---------EEVLSILRAYGCVKACISGHDHEGGY-AQRHGIHFLTLE 242 (267)
T ss_pred eEEEEEeccCCCCCC-Cc-----c--ccccCH---------HHHHHHHHhCCCEEEEEcCCcCCCCc-cccCCeeEEEec
Confidence 899999999864321 11 0 001121 45778887778999999999999765 567999999999
Q ss_pred CccCCCCCCCCCeeEEEEEEcC
Q 017278 330 HTGYGGYGNWPRGARILEIMEQ 351 (374)
Q Consensus 330 ~tgy~~yg~~~rG~R~iel~~~ 351 (374)
++|++ +...+-+-+++++++
T Consensus 243 a~~~~--~~~~~~~~~~~~~~~ 262 (267)
T cd07396 243 GMVET--PPESNAFGVVIVYED 262 (267)
T ss_pred hhhcC--CCCCCceEEEEEeCC
Confidence 99988 777788889999987
No 6
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=99.91 E-value=9.2e-23 Score=190.45 Aligned_cols=215 Identities=21% Similarity=0.287 Sum_probs=146.9
Q ss_pred EEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHhc---cc--CC--------CC--CHHHHHHHHHhhHHHcCCCEEEec
Q 017278 58 KISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLD---HE--TP--------VA--NASLYWDQAISPTRVRGIPWASIF 122 (374)
Q Consensus 58 kI~QlTDlHl~~~~~~~~g~~~d~~t~~~l~~vL~---~e--~P--------i~--~~~~~~~~~~~~l~~~~iP~~~v~ 122 (374)
||+||||+|++..... ...+.++...++++++ +. +| +. .....|+++.+.|.++++|+++++
T Consensus 1 r~~~iSDlH~~~~~~~---~~~~~~~~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~~~~p~~~v~ 77 (240)
T cd07402 1 LLAQISDLHLRADGEG---ALLGVDTAASLEAVLAHINALHPRPDLVLVTGDLTDDGSPESYERLRELLAALPIPVYLLP 77 (240)
T ss_pred CEEEEeCCccCCCCcc---eecCcCHHHHHHHHHHHHHhcCCCCCEEEECccCCCCCCHHHHHHHHHHHhhcCCCEEEeC
Confidence 6999999999865321 1223445555555555 33 56 12 245678889999999999999999
Q ss_pred CCCCCCCCCCCCccccCCCCCccccCCCCCCCCCccccccccccHHHHHHHhhhcccccCcCCCCCCCCCCccceEEEEe
Q 017278 123 GNHDDAPFEWPLDWFSDSGIPQLFCPAVNSSYSGEEECDFRGTHRIELMKKEIDYNVLSHSKNGPKDLWPSISNYVLQVS 202 (374)
Q Consensus 123 GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~r~~lm~~~~~~~~~s~~~~~p~~~~~g~~ny~l~v~ 202 (374)
||||... .+........ . . .+..+|.+.+
T Consensus 78 GNHD~~~----------------------------------------~~~~~~~~~~-------~-~--~~~~~~~~~~- 106 (240)
T cd07402 78 GNHDDRA----------------------------------------AMRAVFPELP-------P-A--PGFVQYVVDL- 106 (240)
T ss_pred CCCCCHH----------------------------------------HHHHhhcccc-------c-c--ccccceeEec-
Confidence 9999742 0111011000 0 0 2334555543
Q ss_pred cCCCcCCceEEEEEEeCCC-CCCCCCCCHHHHHHHHHHHhhhCCCCCCCeEEEEccCccccccccccCCCCCCccCcccc
Q 017278 203 SSHDRQMAVAYMYFLDSGG-GSYPEVISSAQAEWFRHKAEEINPDSRVPEIVFWHIPSKAYKKVAPRFGVHKPCVGSINK 281 (374)
Q Consensus 203 ~~~~~~~~~~~L~~LDS~~-g~~~g~I~~~Ql~WL~~~l~~~~~~~~~p~LvF~HhP~~~~~~~~~~~g~~~~~~g~~n~ 281 (374)
..+++++|||.. +...|+++++|++||++.|++.+ .++.++++||||......+.+ .. ...
T Consensus 107 -------~~~~~i~lds~~~~~~~~~~~~~ql~wL~~~L~~~~---~~~~il~~H~pp~~~~~~~~~----~~--~~~-- 168 (240)
T cd07402 107 -------GGWRLILLDSSVPGQHGGELCAAQLDWLEAALAEAP---DKPTLVFLHHPPFPVGIAWMD----AI--GLR-- 168 (240)
T ss_pred -------CCEEEEEEeCCCCCCcCCEECHHHHHHHHHHHHhCC---CCCEEEEECCCCccCCchhhh----hh--hCC--
Confidence 478999999986 33447899999999999999865 468999999999754221110 00 000
Q ss_pred cchhhhhhhhHHHHHHHhCCCceEEEeCcccCCCccccCCCeEEEEeCCccCC--------CCCCCCCeeEEEEEEcCC
Q 017278 282 ESVAAQEAEMGIMKILVKRTSVKAVFVGHNHGLDWCCPYQNLWLCFARHTGYG--------GYGNWPRGARILEIMEQP 352 (374)
Q Consensus 282 e~v~~~~~n~~l~~~L~~~~~Vkaif~GH~H~nd~~~~~~GI~l~~~~~tgy~--------~yg~~~rG~R~iel~~~~ 352 (374)
....+.+++.++++|+++||||.|. .......|+.++.+++.||. .|....+|||-+.|.+++
T Consensus 169 -------~~~~~~~~l~~~~~v~~v~~GH~H~-~~~~~~~g~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (240)
T cd07402 169 -------NAEALAAVLARHPNVRAILCGHVHR-PIDGSWGGIPLLTAPSTCHQFAPDLDDFALDALAPGYRALSLHEDG 239 (240)
T ss_pred -------CHHHHHHHHhcCCCeeEEEECCcCc-hHHeEECCEEEEEcCcceeeecCCCCcccccccCCCCcEEEEecCC
Confidence 1246888888777999999999998 56678899999999999971 233455799999998763
No 7
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=99.78 E-value=9.5e-18 Score=169.38 Aligned_cols=159 Identities=16% Similarity=0.260 Sum_probs=107.2
Q ss_pred ccccHHHHHHHhhhcccccCcCCCCCC-------CCCCccceEEEEecCCCcCCceEEEEEEeCCC--CCCCCCCCHHHH
Q 017278 163 RGTHRIELMKKEIDYNVLSHSKNGPKD-------LWPSISNYVLQVSSSHDRQMAVAYMYFLDSGG--GSYPEVISSAQA 233 (374)
Q Consensus 163 ~~~~r~~lm~~~~~~~~~s~~~~~p~~-------~~~g~~ny~l~v~~~~~~~~~~~~L~~LDS~~--g~~~g~I~~~Ql 233 (374)
+.++|.|.|+..+... .+-.||.. .-.|...|.+.+. +.+++++|||.. +.+.|.|+++|+
T Consensus 256 ~~~~~~e~i~~~~~~~---~~g~gp~GHGy~~~~~~~G~~YYSFd~~-------ggvrfIvLDSt~~~G~~~G~L~eeQL 325 (496)
T TIGR03767 256 APFTPAEFIKAHLDPA---ATGPGPVGHGYSEDNLSAGTGYYTFDIA-------GGVRGISMDTTNRAGGDEGSLGQTQF 325 (496)
T ss_pred CCCCHHHHHHHhcccc---ccCCCCCCCCcccccccCCCceEEEEeE-------CCEEEEEEeCCCcCCCcCCccCHHHH
Confidence 3478888887644421 11112221 1024556676642 469999999985 467799999999
Q ss_pred HHHHHHHhhhCCCCCCCeEEEEccCccccccccccCCCCCCccCcccccchhhhhhhhHHHHHHHhCCCceEEEeCcccC
Q 017278 234 EWFRHKAEEINPDSRVPEIVFWHIPSKAYKKVAPRFGVHKPCVGSINKESVAAQEAEMGIMKILVKRTSVKAVFVGHNHG 313 (374)
Q Consensus 234 ~WL~~~l~~~~~~~~~p~LvF~HhP~~~~~~~~~~~g~~~~~~g~~n~e~v~~~~~n~~l~~~L~~~~~Vkaif~GH~H~ 313 (374)
+||+++|++.+ .+++|||+|||+......+++ ....+ .+. ....+|+++|.++++|+++||||+|+
T Consensus 326 ~WLeqeLa~a~---~k~VVVf~HHPp~s~g~~~~D----p~~pg-~~~------~n~~eLldLL~~ypnV~aVfsGHvH~ 391 (496)
T TIGR03767 326 KWIKDTLRASS---DTLFVLFSHHTSWSMVNELTD----PVDPG-EKR------HLGTELVSLLLEHPNVLAWVNGHTHS 391 (496)
T ss_pred HHHHHHHhcCC---CCCEEEEECCCCccccccccc----ccccc-ccc------cCHHHHHHHHhcCCCceEEEECCcCC
Confidence 99999999743 468999999999765444432 11001 000 01257999999989999999999999
Q ss_pred CCccccCC---------CeEEEEeCCccCCCCCCCCCeeEEEEEEcC
Q 017278 314 LDWCCPYQ---------NLWLCFARHTGYGGYGNWPRGARILEIMEQ 351 (374)
Q Consensus 314 nd~~~~~~---------GI~l~~~~~tgy~~yg~~~rG~R~iel~~~ 351 (374)
|+. ..+. |+|=+.+ +++-+++.-+|+|||..+
T Consensus 392 n~i-~~~~~~~~~~p~~gfweI~T-----aSlvdfPq~~Ri~Ei~~n 432 (496)
T TIGR03767 392 NKI-TAHRRVEGVGKDKGFWEINT-----ASHIDFPQQGRIIELADN 432 (496)
T ss_pred Ccc-ccccCCCCCCCcCCeEEEec-----cccccCCCCceEEEEEeC
Confidence 764 4443 3333333 467789999999999865
No 8
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=99.77 E-value=6.8e-18 Score=156.36 Aligned_cols=113 Identities=16% Similarity=0.128 Sum_probs=68.0
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCCeEEEEccCccccccccccCCCCCCccCcccccchhhhhhhhHHHHHHHhCCCceEEE
Q 017278 228 ISSAQAEWFRHKAEEINPDSRVPEIVFWHIPSKAYKKVAPRFGVHKPCVGSINKESVAAQEAEMGIMKILVKRTSVKAVF 307 (374)
Q Consensus 228 I~~~Ql~WL~~~l~~~~~~~~~p~LvF~HhP~~~~~~~~~~~g~~~~~~g~~n~e~v~~~~~n~~l~~~L~~~~~Vkaif 307 (374)
++++|++||+++|++.+ ++|+|+|+|||+..... +.. ...... +.+ .....+.++|.++++|+++|
T Consensus 89 ~~~~ql~WL~~~L~~~~---~~~~iv~~H~p~~~~~~-~~~----~~~~~~-~~~-----~~~~~~~~ll~~~~~V~~v~ 154 (214)
T cd07399 89 PRDEVLQWANEVLKKHP---DRPAILTTHAYLNCDDS-RPD----SIDYDS-DVN-----DGQQIWDKLVKKNDNVFMVL 154 (214)
T ss_pred CCHHHHHHHHHHHHHCC---CCCEEEEecccccCCCC-cCc----cccccc-ccc-----cHHHHHHHHHhCCCCEEEEE
Confidence 45899999999999754 57899999999874322 210 000000 000 01123556676778999999
Q ss_pred eCcccCCCccccCCCe--------EEEEeCCccCCCCCCCCCeeEEEEEEcCCCceEEE
Q 017278 308 VGHNHGLDWCCPYQNL--------WLCFARHTGYGGYGNWPRGARILEIMEQPFSLKSW 358 (374)
Q Consensus 308 ~GH~H~nd~~~~~~GI--------~l~~~~~tgy~~yg~~~rG~R~iel~~~~~~i~Tw 358 (374)
|||+|... ...+.|+ +++..... ..+|. .+.+|++++++++..|+.+
T Consensus 155 ~GH~H~~~-~~~~~~~~~~g~~v~~~~~~~q~--~~~~g-~~~~r~~~f~~~~~~i~~~ 209 (214)
T cd07399 155 SGHVHGAG-RTTLVSVGDAGRTVHQMLADYQG--EPNGG-NGFLRLLEFDPDNNKIDVR 209 (214)
T ss_pred ccccCCCc-eEEEcccCCCCCEeeEEeecccC--CCCCC-cceEEEEEEecCCCEEEEE
Confidence 99999854 3444332 11111111 12233 5789999999986555544
No 9
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=99.73 E-value=9.5e-16 Score=147.57 Aligned_cols=148 Identities=19% Similarity=0.233 Sum_probs=95.0
Q ss_pred ceEEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCeEEEEccCccccccccccCCCCCCccCcccccchhhhhh
Q 017278 210 AVAYMYFLDSGGGSYPEVISSAQAEWFRHKAEEINPDSRVPEIVFWHIPSKAYKKVAPRFGVHKPCVGSINKESVAAQEA 289 (374)
Q Consensus 210 ~~~~L~~LDS~~g~~~g~I~~~Ql~WL~~~l~~~~~~~~~p~LvF~HhP~~~~~~~~~~~g~~~~~~g~~n~e~v~~~~~ 289 (374)
..+++++|||......+.+.++|++||++.|++.++......|+++|+|+........ .+ . .+ ...
T Consensus 116 g~v~fi~Lds~~~~~~~~~~~~q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~------~~-~-~~------~~~ 181 (294)
T cd00839 116 GPVHFVSLSTEVDFYGDGPGSPQYDWLEADLAKVDRSKTPWIIVMGHRPMYCSNTDHD------DC-I-EG------EKM 181 (294)
T ss_pred CCEEEEEEecccccccCCCCcHHHHHHHHHHHHhcccCCCeEEEEeccCcEecCcccc------cc-c-hh------HHH
Confidence 4689999999864334679999999999999987542222388899999865322110 00 0 00 111
Q ss_pred hhHHHHHHHhCCCceEEEeCcccCCCcccc---------------CCCeEEEEeCCccCCCC--------------CCCC
Q 017278 290 EMGIMKILVKRTSVKAVFVGHNHGLDWCCP---------------YQNLWLCFARHTGYGGY--------------GNWP 340 (374)
Q Consensus 290 n~~l~~~L~~~~~Vkaif~GH~H~nd~~~~---------------~~GI~l~~~~~tgy~~y--------------g~~~ 340 (374)
...|.++|.+ .+|.++||||+|....... -+|+..+..++.|..-+ ....
T Consensus 182 ~~~l~~ll~~-~~v~~vl~GH~H~y~r~~p~~~~~~~~~~~~~~~~~g~~yiv~G~~G~~~~~~~~~~~~~~~~~~~~~~ 260 (294)
T cd00839 182 RAALEDLFYK-YGVDLVLSGHVHAYERTCPVYNGTVVGDCNPYSNPKGPVHIVIGAGGNDEGLDPFSAPPPAWSAFRESD 260 (294)
T ss_pred HHHHHHHHHH-hCCCEEEEccceeeEeechhhCCEeccccccccCCCccEEEEECCCccccCcCcccCCCCCceEEEecc
Confidence 2345666665 4899999999998643221 25777666666653111 1234
Q ss_pred CeeEEEEEEcCCCceEE-EEEccCCcEEeeeecC
Q 017278 341 RGARILEIMEQPFSLKS-WIRMEDGSVHSEVILS 373 (374)
Q Consensus 341 rG~R~iel~~~~~~i~T-w~R~~~g~~~~~~~l~ 373 (374)
.|+=++++..+ ..+.. |++..+|+++.+++|.
T Consensus 261 ~g~~~~~~~~~-t~l~~~~~~~~~g~v~D~f~i~ 293 (294)
T cd00839 261 YGFGRLTVHNS-THLHFEWIRNDDGVVIDSFWII 293 (294)
T ss_pred CCEEEEEEEec-CeEEEEEEECCCCeEEEEEEEe
Confidence 67777777643 24444 6888999999998874
No 10
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=99.69 E-value=6e-15 Score=140.43 Aligned_cols=213 Identities=16% Similarity=0.165 Sum_probs=129.8
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHhc---ccCC--------CCC--HHHHHHHHHhhHH--HcCCCEEEe
Q 017278 57 FKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLD---HETP--------VAN--ASLYWDQAISPTR--VRGIPWASI 121 (374)
Q Consensus 57 fkI~QlTDlHl~~~~~~~~g~~~d~~t~~~l~~vL~---~e~P--------i~~--~~~~~~~~~~~l~--~~~iP~~~v 121 (374)
+||+||||+|++.. ...+.+.+.++++ ...| +.+ ....|+.+.+.|. ....|+.++
T Consensus 1 ~~i~~isD~H~~~~---------~~~~~~~~~~~~~~i~~~~~D~~v~tGDl~~~~~~~~~~~~~~~l~~~~~~~~~~~v 71 (301)
T COG1409 1 MRIAHISDLHLGAL---------GVDSEELLEALLAAIEQLKPDLLVVTGDLTNDGEPEEYRRLKELLARLELPAPVIVV 71 (301)
T ss_pred CeEEEEecCccccc---------ccchHHHHHHHHHHHhcCCCCEEEEccCcCCCCCHHHHHHHHHHHhhccCCCceEee
Confidence 58999999999851 1233344444433 3445 222 5778999999999 899999999
Q ss_pred cCCCCCCCCCCCCccccCCCCCccccCCCCCCCCCccccccccccHHHHHHHhhhcccccCcCCCCCCCCCCccceEEEE
Q 017278 122 FGNHDDAPFEWPLDWFSDSGIPQLFCPAVNSSYSGEEECDFRGTHRIELMKKEIDYNVLSHSKNGPKDLWPSISNYVLQV 201 (374)
Q Consensus 122 ~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~r~~lm~~~~~~~~~s~~~~~p~~~~~g~~ny~l~v 201 (374)
|||||....+ ...+.. ... .. --+....
T Consensus 72 pGNHD~~~~~------------------------------------~~~~~~-~~~---------~~------~~~~~~~ 99 (301)
T COG1409 72 PGNHDARVVN------------------------------------GEAFSD-QFF---------NR------YAVLVGA 99 (301)
T ss_pred CCCCcCCchH------------------------------------HHHhhh-hhc---------cc------CcceEee
Confidence 9999986410 001111 000 00 0001111
Q ss_pred ecCCCcCCceEEEEEEeCCCC-CCCCCCCHHHHHHHHHHHhhhCCCCCCCeEEEEccCccccccccccCCCCCCccCccc
Q 017278 202 SSSHDRQMAVAYMYFLDSGGG-SYPEVISSAQAEWFRHKAEEINPDSRVPEIVFWHIPSKAYKKVAPRFGVHKPCVGSIN 280 (374)
Q Consensus 202 ~~~~~~~~~~~~L~~LDS~~g-~~~g~I~~~Ql~WL~~~l~~~~~~~~~p~LvF~HhP~~~~~~~~~~~g~~~~~~g~~n 280 (374)
.. .+.++++.+||... ...|.+.+.|++||++.+++.+.. ....++.+|||+......+.. .. ...+
T Consensus 100 ~~-----~~~~~~~~~d~~~~~~~~G~~~~~q~~~l~~~l~~~~~~-~~~~~v~~~hh~~~~~~~~~~----~~--~l~~ 167 (301)
T COG1409 100 CS-----SGGWRVIGLDSSVPGVPLGRLGAEQLDWLEEALAAAPER-AKDTVVVLHHHPLPSPGTGVD----RV--ALRD 167 (301)
T ss_pred cc-----CCceEEEEecCCCCCCCCCEECHHHHHHHHHHHHhCccc-cCceEEEecCCCCCCCCCccc----ee--eeec
Confidence 00 15789999999974 456899999999999999986632 122445555555543222211 00 0011
Q ss_pred ccchhhhhhhhHHHHHHHhCCC-ceEEEeCcccCCC-ccccCCCeEEE-----EeCCccCCCCC----------CCCCee
Q 017278 281 KESVAAQEAEMGIMKILVKRTS-VKAVFVGHNHGLD-WCCPYQNLWLC-----FARHTGYGGYG----------NWPRGA 343 (374)
Q Consensus 281 ~e~v~~~~~n~~l~~~L~~~~~-Vkaif~GH~H~nd-~~~~~~GI~l~-----~~~~tgy~~yg----------~~~rG~ 343 (374)
...+...+...++ |+++++||+|... ....+.+..+. +++++++..-. -..+++
T Consensus 168 ---------~~~~~~~~~~~~~~v~~vl~GH~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (301)
T COG1409 168 ---------AGELLDVLIAHGNDVRLVLSGHIHLAAQTVYQLNGTRLSDLLVGAGPATCSQVFRGSATAFNTLDLDGPGV 238 (301)
T ss_pred ---------chhHHHHHHhcCCceEEEEeCcccccccccceeCCeeeeecccccCCccceeecCCCccceeeeeecCCCe
Confidence 1356667777666 9999999999942 56777777777 77777752111 134666
Q ss_pred EEEEEEcC
Q 017278 344 RILEIMEQ 351 (374)
Q Consensus 344 R~iel~~~ 351 (374)
|+..+...
T Consensus 239 ~~~~~~~~ 246 (301)
T COG1409 239 RVLVLAAE 246 (301)
T ss_pred eEEEEecC
Confidence 66666654
No 11
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.64 E-value=1.4e-14 Score=137.78 Aligned_cols=84 Identities=17% Similarity=0.116 Sum_probs=60.7
Q ss_pred ceEEEEEEeCCCC--C-----CCCCCCHHHHHHHHHHHhhhCCCCCCCeEEEEccCccccccccccCCCCCCccCccccc
Q 017278 210 AVAYMYFLDSGGG--S-----YPEVISSAQAEWFRHKAEEINPDSRVPEIVFWHIPSKAYKKVAPRFGVHKPCVGSINKE 282 (374)
Q Consensus 210 ~~~~L~~LDS~~g--~-----~~g~I~~~Ql~WL~~~l~~~~~~~~~p~LvF~HhP~~~~~~~~~~~g~~~~~~g~~n~e 282 (374)
+.+.+++|||... . +.|.++++|++||++.|++.+. .++.+||+|||+...... ...+
T Consensus 122 ~~~~~I~Ldt~~~~~~~~~~~~~g~l~~~ql~wL~~~L~~~~~--~~~~IV~~HhP~~~~~~~-----------~~~~-- 186 (256)
T cd07401 122 GNYSFIGVDPTLFPGPKRPFNFFGSLDKKLLDRLEKELEKSTN--SNYTIWFGHYPTSTIISP-----------SAKS-- 186 (256)
T ss_pred CCEEEEEEcCccCCCCCCCCceeccCCHHHHHHHHHHHHhccc--CCeEEEEEcccchhccCC-----------Ccch--
Confidence 5789999999742 1 2388999999999999987643 357999999998532110 0001
Q ss_pred chhhhhhhhHHHHHHHhCCCceEEEeCcccCCCc
Q 017278 283 SVAAQEAEMGIMKILVKRTSVKAVFVGHNHGLDW 316 (374)
Q Consensus 283 ~v~~~~~n~~l~~~L~~~~~Vkaif~GH~H~nd~ 316 (374)
..++.++|.++ +|.+++|||.|.+..
T Consensus 187 -------~~~~~~ll~~~-~v~~vl~GH~H~~~~ 212 (256)
T cd07401 187 -------SSKFKDLLKKY-NVTAYLCGHLHPLGG 212 (256)
T ss_pred -------hHHHHHHHHhc-CCcEEEeCCccCCCc
Confidence 12477788765 899999999998554
No 12
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=99.64 E-value=9.9e-15 Score=146.40 Aligned_cols=178 Identities=12% Similarity=0.090 Sum_probs=106.5
Q ss_pred ccccHHHHHHHhhhcc----cccCcCCCCCCCCCCccceEEEEecCCCcCCc--eEEEEEEeCCC--------CCCCCCC
Q 017278 163 RGTHRIELMKKEIDYN----VLSHSKNGPKDLWPSISNYVLQVSSSHDRQMA--VAYMYFLDSGG--------GSYPEVI 228 (374)
Q Consensus 163 ~~~~r~~lm~~~~~~~----~~s~~~~~p~~~~~g~~ny~l~v~~~~~~~~~--~~~L~~LDS~~--------g~~~g~I 228 (374)
+.++|.|.|+...... +..|+...+. -.|..+|.+.. .. .+++|+|||.. |.+.|.|
T Consensus 259 r~l~r~e~i~e~~~t~~~P~GHGf~~~~~~--~~G~~yYsFd~-------~g~vplrvIvLDSt~~~~~~s~pG~~~G~L 329 (492)
T TIGR03768 259 RSLLRAEWMQEFLNTSSLPKGHGFGLIDGA--GNDFACYSFVP-------KSDVPLKVIVLDDTQSEHDGSHDIHGHGSL 329 (492)
T ss_pred CcCCHHHHHHHHhcCCCCCcCCCcCccccc--ccCcceeEEec-------CCCcceEEEEECCCccccccCCCCCcceee
Confidence 4578889887755431 1233332211 14556777763 23 35999999986 5677999
Q ss_pred CHHHHHHHHHHHhhhCCCCCCCeEEEEccCcccc-cccccc-CCC-CCCccCcccccchhhhhhhhHHHHHHHhCCCceE
Q 017278 229 SSAQAEWFRHKAEEINPDSRVPEIVFWHIPSKAY-KKVAPR-FGV-HKPCVGSINKESVAAQEAEMGIMKILVKRTSVKA 305 (374)
Q Consensus 229 ~~~Ql~WL~~~l~~~~~~~~~p~LvF~HhP~~~~-~~~~~~-~g~-~~~~~g~~n~e~v~~~~~n~~l~~~L~~~~~Vka 305 (374)
+++|++||+++|+..++ ..|.+|++||||... ...... .+. +.. + .+.........++.++|.++++|++
T Consensus 330 d~eQLaWLe~~La~a~a--~~p~VVV~hHpPi~t~gi~~md~w~~~~~~--~---~~~L~n~~~~~eLlaLL~~hPnVla 402 (492)
T TIGR03768 330 DAKRWDWLKAELARGQA--DGQLMIIAAHIPIAVSPIGSEMEWWLGAAD--A---NPDLQNAVSLTGLVTTLQKYPNLLM 402 (492)
T ss_pred CHHHHHHHHHHHHhCcC--CCceEEEEeCCCcccCCccchhhhcccccc--c---cccccccccHHHHHHHHhcCCCeEE
Confidence 99999999999998653 357777777777543 111110 000 000 0 0000001112479999999999999
Q ss_pred EEeCcccCCCccccCCCeEEEEeCCccC-----CCCCCCCCeeEEEEEEcCC---CceEEE
Q 017278 306 VFVGHNHGLDWCCPYQNLWLCFARHTGY-----GGYGNWPRGARILEIMEQP---FSLKSW 358 (374)
Q Consensus 306 if~GH~H~nd~~~~~~GI~l~~~~~tgy-----~~yg~~~rG~R~iel~~~~---~~i~Tw 358 (374)
++|||+|.|-. ..+.... -.-|.-|| .+.-|++--.|+|||..+. -+|.|-
T Consensus 403 ~LsGHvHrn~v-~a~~~p~-~~~pe~gFWeveTaSl~DfPQq~R~~Ei~~n~d~tvsi~tt 461 (492)
T TIGR03768 403 WIAGHRHLNTV-KAFPSPD-PARPEYGFWQVETASLRDFPQQFRTFEIYLNSDDTVSIEAV 461 (492)
T ss_pred EEcCCcccccc-cccCCCC-CCCCcCceEEEeehhhccchhhceEEEEEeCCCCeEEEEEE
Confidence 99999998643 3332111 00122233 3555899999999998753 245554
No 13
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=99.61 E-value=5.8e-14 Score=134.15 Aligned_cols=119 Identities=15% Similarity=0.131 Sum_probs=83.6
Q ss_pred ceEEEEEEeCCCCC------------CCCCCCHHHHHHHHHHHhhhCCCCCCCeEEEEccCccccccccccCCCCCCccC
Q 017278 210 AVAYMYFLDSGGGS------------YPEVISSAQAEWFRHKAEEINPDSRVPEIVFWHIPSKAYKKVAPRFGVHKPCVG 277 (374)
Q Consensus 210 ~~~~L~~LDS~~g~------------~~g~I~~~Ql~WL~~~l~~~~~~~~~p~LvF~HhP~~~~~~~~~~~g~~~~~~g 277 (374)
+.+++++|||.... +.+.+.++|++||+++|++.+ ..+.||++|||+.......
T Consensus 119 ~~~~~i~LDt~~~~~~~~~~~~~~~~~~~~~~~~Q~~wL~~~L~~~~---~~~~iv~~H~P~~~~~~~~----------- 184 (277)
T cd07378 119 TTVEFIMIDTVPLCGNSDDIASPYGPPNGKLAEEQLAWLEKTLAAST---ADWKIVVGHHPIYSSGEHG----------- 184 (277)
T ss_pred CEEEEEEEeChhHcCccccccccccCcchhhHHHHHHHHHHHHHhcC---CCeEEEEeCccceeCCCCC-----------
Confidence 47999999998621 236799999999999998765 3678999999987542210
Q ss_pred cccccchhhhhhhhHHHHHHHhCCCceEEEeCcccCCCccccCC--CeEEEEeCCccCCCCC---------------CCC
Q 017278 278 SINKESVAAQEAEMGIMKILVKRTSVKAVFVGHNHGLDWCCPYQ--NLWLCFARHTGYGGYG---------------NWP 340 (374)
Q Consensus 278 ~~n~e~v~~~~~n~~l~~~L~~~~~Vkaif~GH~H~nd~~~~~~--GI~l~~~~~tgy~~yg---------------~~~ 340 (374)
. . ......|.+++.++ +|.+++|||+|.... .... |+.++.+++.|+..+. ...
T Consensus 185 --~-~----~~~~~~l~~l~~~~-~v~~vl~GH~H~~~~-~~~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (277)
T cd07378 185 --P-T----SCLVDRLLPLLKKY-KVDAYLSGHDHNLQH-IKDDGSGTSFVVSGAGSKARPSVKHIDKVPQFFSGFTSSG 255 (277)
T ss_pred --C-c----HHHHHHHHHHHHHc-CCCEEEeCCccccee-eecCCCCcEEEEeCCCcccCCCCCccCcccccccccccCC
Confidence 0 0 01113566777664 799999999998543 4445 8988888877752111 234
Q ss_pred CeeEEEEEEcC
Q 017278 341 RGARILEIMEQ 351 (374)
Q Consensus 341 rG~R~iel~~~ 351 (374)
.|+..++++.+
T Consensus 256 ~Gy~~i~v~~~ 266 (277)
T cd07378 256 GGFAYLELTKE 266 (277)
T ss_pred CCEEEEEEecC
Confidence 78999998865
No 14
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=99.60 E-value=4.5e-14 Score=132.32 Aligned_cols=83 Identities=17% Similarity=0.160 Sum_probs=62.1
Q ss_pred CCCCHHHHHHHHHHHhhhCCC-CCCCeEEEEccCccccccccccCCCCCCccCcccccchhhhhhhhHHHHHHHhCCCce
Q 017278 226 EVISSAQAEWFRHKAEEINPD-SRVPEIVFWHIPSKAYKKVAPRFGVHKPCVGSINKESVAAQEAEMGIMKILVKRTSVK 304 (374)
Q Consensus 226 g~I~~~Ql~WL~~~l~~~~~~-~~~p~LvF~HhP~~~~~~~~~~~g~~~~~~g~~n~e~v~~~~~n~~l~~~L~~~~~Vk 304 (374)
|.+.++|++||++.+++.+.. ...+.|+++|+|+.... .+. ..+.+.+.+. +|+
T Consensus 141 ~~~~~~~l~~l~~~L~~~~~~~~~~~~i~~~H~p~~~~~---------------~~~---------~~~~~~~~~~-~v~ 195 (232)
T cd07393 141 EKIFERELERLELSLKAAKKREKEKIKIVMLHYPPANEN---------------GDD---------SPISKLIEEY-GVD 195 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCcCCC---------------CCH---------HHHHHHHHHc-CCC
Confidence 567788999999999986532 12479999999985421 111 2466676664 899
Q ss_pred EEEeCcccCCC----ccccCCCeEEEEeCCccC
Q 017278 305 AVFVGHNHGLD----WCCPYQNLWLCFARHTGY 333 (374)
Q Consensus 305 aif~GH~H~nd----~~~~~~GI~l~~~~~tgy 333 (374)
+++|||.|... +.+.++||.+..+|+|||
T Consensus 196 ~vl~GH~H~~~~~~~~~~~~~gi~~~~~~~~~~ 228 (232)
T cd07393 196 ICVYGHLHGVGRDRAINGERGGIRYQLVSADYL 228 (232)
T ss_pred EEEECCCCCCcccccccceECCEEEEEEcchhc
Confidence 99999999864 234579999999999987
No 15
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=99.55 E-value=1.4e-13 Score=129.40 Aligned_cols=93 Identities=12% Similarity=0.011 Sum_probs=57.1
Q ss_pred CCCCCHHHHHHHHHHHhhhCCCCCCCeEEEEccCccccccccccCCCCCCccCcccccchhhhhhhhHHHHHHHhCCCce
Q 017278 225 PEVISSAQAEWFRHKAEEINPDSRVPEIVFWHIPSKAYKKVAPRFGVHKPCVGSINKESVAAQEAEMGIMKILVKRTSVK 304 (374)
Q Consensus 225 ~g~I~~~Ql~WL~~~l~~~~~~~~~p~LvF~HhP~~~~~~~~~~~g~~~~~~g~~n~e~v~~~~~n~~l~~~L~~~~~Vk 304 (374)
.+.+.+++++||++.|++.. ..++|+++||||...... . +.+.+ .++. ..+-...+.+.+.+.++ +|+
T Consensus 144 ~~~~~~~~l~~l~~~l~~~~---~~~~ivvtH~pP~~~~~~-~--~~~~~---~~~~--~~~~~~s~~l~~li~~~-~v~ 211 (239)
T TIGR03729 144 DPERTAIVLKQLKKQLNQLD---NKQVIFVTHFVPHRDFIY-V--PMDHR---RFDM--FNAFLGSQHFGQLLVKY-EIK 211 (239)
T ss_pred hHHHHHHHHHHHHHHHHhcC---CCCEEEEEcccchHHHhc-C--CCCCc---chhh--hhhccChHHHHHHHHHh-CCC
Confidence 36789999999999998765 467999999999532110 0 00000 0000 00000114577777665 999
Q ss_pred EEEeCcccCCCccccCCCeEEEEeC
Q 017278 305 AVFVGHNHGLDWCCPYQNLWLCFAR 329 (374)
Q Consensus 305 aif~GH~H~nd~~~~~~GI~l~~~~ 329 (374)
+++|||.|..--....+|+.++..+
T Consensus 212 ~~i~GH~H~~~~~~~i~~~~~~~~~ 236 (239)
T TIGR03729 212 DVIFGHLHRRFGPLTIGGTTYHNRP 236 (239)
T ss_pred EEEECCccCCCCCEEECCEEEEecC
Confidence 9999999984322344788776543
No 16
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=99.53 E-value=1.4e-13 Score=133.03 Aligned_cols=113 Identities=16% Similarity=0.164 Sum_probs=74.2
Q ss_pred ceEEEEEEeCCCCC-C-------CCCCCHHHHHHHHHHHhhhCCCCCCCeEEEEccCccccccccccCCCCCCccCcccc
Q 017278 210 AVAYMYFLDSGGGS-Y-------PEVISSAQAEWFRHKAEEINPDSRVPEIVFWHIPSKAYKKVAPRFGVHKPCVGSINK 281 (374)
Q Consensus 210 ~~~~L~~LDS~~g~-~-------~g~I~~~Ql~WL~~~l~~~~~~~~~p~LvF~HhP~~~~~~~~~~~g~~~~~~g~~n~ 281 (374)
+.+++++|||.... . .+....+|++||+++|++.++. +.+++|++||||....... +
T Consensus 168 ~~l~vI~Lnt~~~~~~~~~~~~~~~~~~~~Ql~WL~~~L~~a~~~-~~~v~I~~HiPp~~~~~~~-------------~- 232 (296)
T cd00842 168 PGLRVISLNTNLYYKKNFWLLGSNETDPAGQLQWLEDELQEAEQA-GEKVWIIGHIPPGVNSYDT-------------L- 232 (296)
T ss_pred CCeEEEEEeCccccccChhhhccCCCCHHHHHHHHHHHHHHHHHC-CCeEEEEeccCCCCccccc-------------c-
Confidence 47999999998622 1 2345689999999999987532 4679999999996532110 0
Q ss_pred cchhhhhhhhHHHHHHHhCCC-ceEEEeCcccCCCccccCC-------CeEEEEeCCccCCCCCCCCCeeE
Q 017278 282 ESVAAQEAEMGIMKILVKRTS-VKAVFVGHNHGLDWCCPYQ-------NLWLCFARHTGYGGYGNWPRGAR 344 (374)
Q Consensus 282 e~v~~~~~n~~l~~~L~~~~~-Vkaif~GH~H~nd~~~~~~-------GI~l~~~~~tgy~~yg~~~rG~R 344 (374)
+.....|.+++.++++ |+++|+||.|..++...+. +..+..+|+.. -+....||+|
T Consensus 233 -----~~~~~~~~~ii~~y~~~i~~~~~GH~H~d~~~~~~~~~~~~~~~~~~~~~psit--p~~~~nP~~r 296 (296)
T cd00842 233 -----ENWSERYLQIINRYSDTIAGQFFGHTHRDEFRVFYDDNDTGEPINVALIAPSVT--PYSGNNPGFR 296 (296)
T ss_pred -----hHHHHHHHHHHHHHHHhhheeeecccccceEEEEeCCCCCCCceEEEEecCccC--cCCCCCCCCC
Confidence 0112468888888765 7899999999977644432 34555555443 1222346665
No 17
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=99.49 E-value=1.2e-12 Score=116.95 Aligned_cols=94 Identities=14% Similarity=0.042 Sum_probs=57.3
Q ss_pred eEEEEEEeCCC---CCCCCCCCHHHHHHHHHHHhhhCCCCCCCeEEEEccCcccc-ccccccCCCCCCccCcccccchhh
Q 017278 211 VAYMYFLDSGG---GSYPEVISSAQAEWFRHKAEEINPDSRVPEIVFWHIPSKAY-KKVAPRFGVHKPCVGSINKESVAA 286 (374)
Q Consensus 211 ~~~L~~LDS~~---g~~~g~I~~~Ql~WL~~~l~~~~~~~~~p~LvF~HhP~~~~-~~~~~~~g~~~~~~g~~n~e~v~~ 286 (374)
.++++.+|+.. +...+.++++|++|+ +.+... ..++.|+++|+||... .+... .. .+ .+
T Consensus 87 ~~~~~g~~~~~~~~~~~~~~~~~~~l~~~-~~l~~~---~~~~~ilv~H~pp~~~~~d~~~--------~~-~~---~g- 149 (188)
T cd07392 87 GYTFVGIGGSNPTPFNTPIELSEEEIVSD-GRLNNL---LAKNLILVTHAPPYGTAVDRVS--------GG-FH---VG- 149 (188)
T ss_pred CEEEEEeCCCCCCCCCCccccCHHHHHHh-hhhhcc---CCCCeEEEECCCCcCCcccccC--------CC-Cc---cC-
Confidence 58899999753 222467899999999 444332 2468999999999642 11110 00 00 01
Q ss_pred hhhhhHHHHHHHhCCCceEEEeCcccCCCccccCCCeEE
Q 017278 287 QEAEMGIMKILVKRTSVKAVFVGHNHGLDWCCPYQNLWL 325 (374)
Q Consensus 287 ~~~n~~l~~~L~~~~~Vkaif~GH~H~nd~~~~~~GI~l 325 (374)
...+.+++.+ .++++++|||+|+.-......+.++
T Consensus 150 ---~~~l~~li~~-~~~~~~l~GH~H~~~~~~~~~~~~~ 184 (188)
T cd07392 150 ---SKAIRKFIEE-RQPLLCICGHIHESRGVDKIGNTLV 184 (188)
T ss_pred ---CHHHHHHHHH-hCCcEEEEeccccccceeeeCCeEE
Confidence 1346666655 4899999999998432223444433
No 18
>PLN02533 probable purple acid phosphatase
Probab=99.47 E-value=9.6e-12 Score=126.57 Aligned_cols=87 Identities=25% Similarity=0.358 Sum_probs=57.3
Q ss_pred ceEEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCC-eEEEEccCccccccccccCCCCCCccCcccccchhhhh
Q 017278 210 AVAYMYFLDSGGGSYPEVISSAQAEWFRHKAEEINPDSRVP-EIVFWHIPSKAYKKVAPRFGVHKPCVGSINKESVAAQE 288 (374)
Q Consensus 210 ~~~~L~~LDS~~g~~~g~I~~~Ql~WL~~~l~~~~~~~~~p-~LvF~HhP~~~~~~~~~~~g~~~~~~g~~n~e~v~~~~ 288 (374)
..+.+++|||... .....+|++||++.|++.+.. ..| .|+++|+|+........ +. .+.....
T Consensus 248 g~vhfI~Lds~~~---~~~~~~Q~~WLe~dL~~~~r~-~~pwiIv~~H~P~y~s~~~~~---------~~--~~~~~~r- 311 (427)
T PLN02533 248 YGVHIIMLGSYTD---FEPGSEQYQWLENNLKKIDRK-TTPWVVAVVHAPWYNSNEAHQ---------GE--KESVGMK- 311 (427)
T ss_pred CCEEEEEEeCCcc---ccCchHHHHHHHHHHHhhccc-CCCEEEEEeCCCeeecccccC---------Cc--chhHHHH-
Confidence 4688999999752 135689999999999986532 346 77889999875432110 10 0111111
Q ss_pred hhhHHHHHHHhCCCceEEEeCcccCCC
Q 017278 289 AEMGIMKILVKRTSVKAVFVGHNHGLD 315 (374)
Q Consensus 289 ~n~~l~~~L~~~~~Vkaif~GH~H~nd 315 (374)
..|..+|.+ .+|.++||||+|..+
T Consensus 312 --~~le~Ll~~-~~VdlvlsGH~H~Ye 335 (427)
T PLN02533 312 --ESMETLLYK-ARVDLVFAGHVHAYE 335 (427)
T ss_pred --HHHHHHHHH-hCCcEEEecceeccc
Confidence 245555555 699999999999865
No 19
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=99.31 E-value=5.2e-11 Score=113.49 Aligned_cols=103 Identities=16% Similarity=0.182 Sum_probs=61.0
Q ss_pred ceEEEEEEeCCC--CCCCCCCCHHHHHHHHHHHhhhCCCCCCCeEEEEccCccccccccccC--CCCCC---ccCccccc
Q 017278 210 AVAYMYFLDSGG--GSYPEVISSAQAEWFRHKAEEINPDSRVPEIVFWHIPSKAYKKVAPRF--GVHKP---CVGSINKE 282 (374)
Q Consensus 210 ~~~~L~~LDS~~--g~~~g~I~~~Ql~WL~~~l~~~~~~~~~p~LvF~HhP~~~~~~~~~~~--g~~~~---~~g~~n~e 282 (374)
..+++++|||.. +...+.+...|.+||++.++..++ ..|+|+|+|||+..-....-.. ....+ ..|.. .+
T Consensus 124 ~~~~fV~Lds~~l~~~~~~~~~~~~~~~l~~~l~~~~~--~~p~ILl~H~Plyr~~~~~cg~~re~~~~~~~~~g~~-yq 200 (257)
T cd08163 124 GNHTFVILDTISLSNKDDPDVYQPPREFLHSFSAMKVK--SKPRILLTHVPLYRPPNTSCGPLRESKTPLPYGYGYQ-YQ 200 (257)
T ss_pred CCEEEEEEccccccCCcccccchhHHHHHHhhhhccCC--CCcEEEEeccccccCCCCCCCCccccCCCCCCCCCcc-ce
Confidence 478899999985 333467999999999998876543 5799999999996421100000 00000 01110 11
Q ss_pred chhhhhhhhHHHHHHHhCCCceEEEeCcccCCCccccCC
Q 017278 283 SVAAQEAEMGIMKILVKRTSVKAVFVGHNHGLDWCCPYQ 321 (374)
Q Consensus 283 ~v~~~~~n~~l~~~L~~~~~Vkaif~GH~H~nd~~~~~~ 321 (374)
.+-.++.-..+++.+ +..+||+||+| ++|-..+
T Consensus 201 ~~l~~~~s~~il~~~----~P~~vfsGhdH--~~C~~~h 233 (257)
T cd08163 201 NLLEPSLSEVILKAV----QPVIAFSGDDH--DYCEVVH 233 (257)
T ss_pred eecCHHHHHHHHHhh----CCcEEEecCCC--ccceeEc
Confidence 121222223444444 56899999999 5886543
No 20
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=99.13 E-value=2.4e-10 Score=101.06 Aligned_cols=67 Identities=9% Similarity=0.039 Sum_probs=42.7
Q ss_pred CCeEEEEccCccccccccccCCCCCCccCcccccchhhhhhhhHHHHHHHhCCCceEEEeCcccCCCccccCCCeEEEEe
Q 017278 249 VPEIVFWHIPSKAYKKVAPRFGVHKPCVGSINKESVAAQEAEMGIMKILVKRTSVKAVFVGHNHGLDWCCPYQNLWLCFA 328 (374)
Q Consensus 249 ~p~LvF~HhP~~~~~~~~~~~g~~~~~~g~~n~e~v~~~~~n~~l~~~L~~~~~Vkaif~GH~H~nd~~~~~~GI~l~~~ 328 (374)
+++++|+||||......+.. . .+..|. .....+.+.+ +.++|++++|||.|++ ....+.|+.++..
T Consensus 97 ~~~vv~~HhpP~~~~~~~~~----~--~~~~~~------~~~~~l~~~~-~~~~v~~~i~GH~H~~-~~~~~~g~~~~~n 162 (166)
T cd07404 97 GKTVVVTHHAPSPLSLAPQY----G--DSLVNA------AFAVDLDDLI-LADPIDLWIHGHTHFN-FDYRIGGTRVLSN 162 (166)
T ss_pred CCEEEEeCCCCCccccCccc----c--CCCcch------hhhhccHhHH-hhcCCCEEEECCcccc-ceEEECCEEEEec
Confidence 58999999999765443321 0 111110 0001233444 4579999999999995 5567899988877
Q ss_pred C
Q 017278 329 R 329 (374)
Q Consensus 329 ~ 329 (374)
|
T Consensus 163 p 163 (166)
T cd07404 163 Q 163 (166)
T ss_pred C
Confidence 6
No 21
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=99.12 E-value=1.4e-08 Score=101.51 Aligned_cols=139 Identities=13% Similarity=0.033 Sum_probs=87.5
Q ss_pred ceEEEEEEeCCC--CCC-CCCCCHHHHHHHHHHHhhhCCCCCCCeEEEEccCccccccccccCCCCCCccCcccccchhh
Q 017278 210 AVAYMYFLDSGG--GSY-PEVISSAQAEWFRHKAEEINPDSRVPEIVFWHIPSKAYKKVAPRFGVHKPCVGSINKESVAA 286 (374)
Q Consensus 210 ~~~~L~~LDS~~--g~~-~g~I~~~Ql~WL~~~l~~~~~~~~~p~LvF~HhP~~~~~~~~~~~g~~~~~~g~~n~e~v~~ 286 (374)
..+.++|+||.. ..+ ....++.+.+||+++|+...+. ..-.||+-|||+.....- |. +. +.
T Consensus 173 ~~v~fifiDT~~l~~~~~~~~~~~~~w~~L~~~L~~a~k~-a~WkIVvGHhPIySsG~h-----------g~-~~---~L 236 (394)
T PTZ00422 173 MSVAFIFIDTWILSSSFPYKKVSERAWQDLKATLEYAPKI-ADYIIVVGDKPIYSSGSS-----------KG-DS---YL 236 (394)
T ss_pred CEEEEEEEECchhcccCCccccCHHHHHHHHHHHHhhccC-CCeEEEEecCceeecCCC-----------CC-CH---HH
Confidence 468899999975 222 1346889999999999754322 246899999999864321 10 11 11
Q ss_pred hhhhhHHHHHHHhCCCceEEEeCcccCCCccccCCCeEEEEeCCccCCCCC-----------CCCCeeEEEEEEcCCCce
Q 017278 287 QEAEMGIMKILVKRTSVKAVFVGHNHGLDWCCPYQNLWLCFARHTGYGGYG-----------NWPRGARILEIMEQPFSL 355 (374)
Q Consensus 287 ~~~n~~l~~~L~~~~~Vkaif~GH~H~nd~~~~~~GI~l~~~~~tgy~~yg-----------~~~rG~R~iel~~~~~~i 355 (374)
...+..+|.+ .+|.+++|||||.-... ...|+.+..+++.|....+ ....|.-.++++.+ ++
T Consensus 237 ---~~~L~PLL~k-y~VdlYisGHDH~lq~i-~~~gt~yIvSGaGs~~~~~~~~~~~~s~F~~~~~GF~~~~l~~~--~l 309 (394)
T PTZ00422 237 ---SYYLLPLLKD-AQVDLYISGYDRNMEVL-TDEGTAHINCGSGGNSGRKSIMKNSKSLFYSEDIGFCIHELNAE--GM 309 (394)
T ss_pred ---HHHHHHHHHH-cCcCEEEEccccceEEe-cCCCceEEEeCccccccCCCCCCCCCcceecCCCCEEEEEEecC--EE
Confidence 1245556554 68999999999975553 4478988887776532211 22467777777653 45
Q ss_pred EEEE-EccCCcEEeeee
Q 017278 356 KSWI-RMEDGSVHSEVI 371 (374)
Q Consensus 356 ~Tw~-R~~~g~~~~~~~ 371 (374)
++-. ...+|++....+
T Consensus 310 ~~~fid~~~GkvL~~~~ 326 (394)
T PTZ00422 310 VTKFVSGNTGEVLYTHK 326 (394)
T ss_pred EEEEEeCCCCcEEEEee
Confidence 5443 234666655543
No 22
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.12 E-value=6.7e-11 Score=100.39 Aligned_cols=65 Identities=23% Similarity=0.258 Sum_probs=39.7
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHhcccCC--------CCC---HHHH-HHH--HHhhHHHcCCCEEEec
Q 017278 57 FKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHETP--------VAN---ASLY-WDQ--AISPTRVRGIPWASIF 122 (374)
Q Consensus 57 fkI~QlTDlHl~~~~~~~~g~~~d~~t~~~l~~vL~~e~P--------i~~---~~~~-~~~--~~~~l~~~~iP~~~v~ 122 (374)
|||+++||+|+...... . ....+.......+| +.+ .... ... ........++|+++++
T Consensus 1 ~ri~~isD~H~~~~~~~-------~-~~~~~~~~~~~~~~d~ii~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (200)
T PF00149_consen 1 MRILVISDLHGGYDDDS-------D-AFRKLDEIAAENKPDFIIFLGDLVDGGNPSEEWRAQFWFFIRLLNPKIPVYFIL 72 (200)
T ss_dssp EEEEEEEBBTTTHHHHC-------H-HHHHHHHHHHHTTTSEEEEESTSSSSSSHHHHHHHHHHHHHHHHHTTTTEEEEE
T ss_pred CeEEEEcCCCCCCcchh-------H-HHHHHHHHhccCCCCEEEeeccccccccccccchhhhccchhhhhccccccccc
Confidence 79999999999764310 1 23344444444556 111 1212 222 2567788899999999
Q ss_pred CCCCCCC
Q 017278 123 GNHDDAP 129 (374)
Q Consensus 123 GNHD~~~ 129 (374)
||||...
T Consensus 73 GNHD~~~ 79 (200)
T PF00149_consen 73 GNHDYYS 79 (200)
T ss_dssp -TTSSHH
T ss_pred cccccce
Confidence 9999763
No 23
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=99.08 E-value=1.2e-09 Score=94.19 Aligned_cols=66 Identities=21% Similarity=0.281 Sum_probs=38.1
Q ss_pred EEEEecCCCCCCCCCCCCCCCChhHHHHHHHHhcccCC--------CC--CHHHHHHHHHhhHHHcCC---CEEEecCCC
Q 017278 59 ISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHETP--------VA--NASLYWDQAISPTRVRGI---PWASIFGNH 125 (374)
Q Consensus 59 I~QlTDlHl~~~~~~~~g~~~d~~t~~~l~~vL~~e~P--------i~--~~~~~~~~~~~~l~~~~i---P~~~v~GNH 125 (374)
|+||||+|++....... .......+.+.+.+++++| +. .....|.++.+.+.+... |+++++|||
T Consensus 1 il~isD~Hl~~~~~~~~--~~~~~~l~~~~~~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~GNH 78 (144)
T cd07400 1 ILHLSDLHFGPERKPEL--LALLSLLDRLLAEIKALDPDLVVITGDLTQRGLPEEFEEAREFLDALPAPLEPVLVVPGNH 78 (144)
T ss_pred CeEeCccCCCCCcchhH--HHHHHHHHHHHHHHhccCCCEEEECCCCCCCCCHHHHHHHHHHHHHccccCCcEEEeCCCC
Confidence 68999999987542100 0011112234444555666 11 134456666666666555 899999998
Q ss_pred C
Q 017278 126 D 126 (374)
Q Consensus 126 D 126 (374)
|
T Consensus 79 D 79 (144)
T cd07400 79 D 79 (144)
T ss_pred e
Confidence 8
No 24
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=99.03 E-value=4.4e-09 Score=96.50 Aligned_cols=94 Identities=12% Similarity=-0.008 Sum_probs=53.0
Q ss_pred ceEEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCeEEEEccCccccccccccCCCCCCccCcccccchhhhhh
Q 017278 210 AVAYMYFLDSGGGSYPEVISSAQAEWFRHKAEEINPDSRVPEIVFWHIPSKAYKKVAPRFGVHKPCVGSINKESVAAQEA 289 (374)
Q Consensus 210 ~~~~L~~LDS~~g~~~g~I~~~Ql~WL~~~l~~~~~~~~~p~LvF~HhP~~~~~~~~~~~g~~~~~~g~~n~e~v~~~~~ 289 (374)
..+.|+.++... .......+++++.......+ ..+.|++.|+|+........ +.
T Consensus 124 ~~v~i~g~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~~Il~~H~~~~~~~~~~~--------------~~------ 177 (223)
T cd00840 124 TGVAIYGLPYLR----RSRLRDLLADAELRPRPLDP--DDFNILLLHGGVAGAGPSDS--------------ER------ 177 (223)
T ss_pred eEEEEEECCCCC----HHHHHHHHHHHHHHhhccCC--CCcEEEEEeeeeecCCCCcc--------------cc------
Confidence 356677777653 12223344444444443332 56899999999865432110 00
Q ss_pred hhHHHHHHHhCCCceEEEeCcccCCCccccCCCeEEEEeCCc
Q 017278 290 EMGIMKILVKRTSVKAVFVGHNHGLDWCCPYQNLWLCFARHT 331 (374)
Q Consensus 290 n~~l~~~L~~~~~Vkaif~GH~H~nd~~~~~~GI~l~~~~~t 331 (374)
....++.+. ..++..+++||.|..... ...+..+.|.++.
T Consensus 178 ~~~~~~~~~-~~~~d~v~~GH~H~~~~~-~~~~~~~~ypGS~ 217 (223)
T cd00840 178 APFVPEALL-PAGFDYVALGHIHRPQII-LGGGPPIVYPGSP 217 (223)
T ss_pred cccCcHhhc-CcCCCEEECCCcccCeee-cCCCceEEeCCCc
Confidence 011333444 367999999999985432 4456777776554
No 25
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=98.94 E-value=6.3e-08 Score=90.48 Aligned_cols=61 Identities=8% Similarity=0.001 Sum_probs=43.1
Q ss_pred CeEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHhcccCC--------CCC---HHHHHHHHHhhHHHcCCCEEEecCC
Q 017278 56 PFKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHETP--------VAN---ASLYWDQAISPTRVRGIPWASIFGN 124 (374)
Q Consensus 56 ~fkI~QlTDlHl~~~~~~~~g~~~d~~t~~~l~~vL~~e~P--------i~~---~~~~~~~~~~~l~~~~iP~~~v~GN 124 (374)
..||+.|||+|= +....+.+.+.++++.+ +.+ ..+.+..+++.+.++++|+++++||
T Consensus 4 ~~kIl~iSDiHg------------n~~~le~l~~~~~~~~~D~vv~~GDl~~~g~~~~~~~~~l~~l~~l~~pv~~V~GN 71 (224)
T cd07388 4 VRYVLATSNPKG------------DLEALEKLVGLAPETGADAIVLIGNLLPKAAKSEDYAAFFRILGEAHLPTFYVPGP 71 (224)
T ss_pred eeEEEEEEecCC------------CHHHHHHHHHHHhhcCCCEEEECCCCCCCCCCHHHHHHHHHHHHhcCCceEEEcCC
Confidence 468999999992 22344444444444455 222 2456788889999999999999999
Q ss_pred CCCC
Q 017278 125 HDDA 128 (374)
Q Consensus 125 HD~~ 128 (374)
||..
T Consensus 72 hD~~ 75 (224)
T cd07388 72 QDAP 75 (224)
T ss_pred CChH
Confidence 9964
No 26
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=98.81 E-value=5e-07 Score=91.40 Aligned_cols=51 Identities=20% Similarity=0.150 Sum_probs=33.6
Q ss_pred CCceEEEeCcccCCCccc---cCCCeEEEEeCCccCCCC---CCCCCeeEEEEEEcC
Q 017278 301 TSVKAVFVGHNHGLDWCC---PYQNLWLCFARHTGYGGY---GNWPRGARILEIMEQ 351 (374)
Q Consensus 301 ~~Vkaif~GH~H~nd~~~---~~~GI~l~~~~~tgy~~y---g~~~rG~R~iel~~~ 351 (374)
..+..+..||.|...... ...+..+.|.+++=--+. ...++|+-+++++..
T Consensus 227 ~~fDYValGHiH~~~~~p~~~~~~~~~V~ypGS~v~tSf~e~E~~~Kgv~lVeI~~~ 283 (405)
T TIGR00583 227 DFFDLVIWGHEHECLPDPVYNPSDGFYVLQPGSTVATSLTPGEALPKHVFILNIKGR 283 (405)
T ss_pred ccCcEEEecccccccccccccCCCCceEEECCCcccccccccccCCCEEEEEEEcCC
Confidence 368999999999721111 124667888776543223 235789999999854
No 27
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=98.70 E-value=9.8e-07 Score=89.07 Aligned_cols=148 Identities=18% Similarity=0.223 Sum_probs=89.8
Q ss_pred ceEEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCeEEEEccCccccccccccCCCCCCccCcccccchhhhhh
Q 017278 210 AVAYMYFLDSGGGSYPEVISSAQAEWFRHKAEEINPDSRVPEIVFWHIPSKAYKKVAPRFGVHKPCVGSINKESVAAQEA 289 (374)
Q Consensus 210 ~~~~L~~LDS~~g~~~g~I~~~Ql~WL~~~l~~~~~~~~~p~LvF~HhP~~~~~~~~~~~g~~~~~~g~~n~e~v~~~~~ 289 (374)
....+++|+|-.+- .=....+|-+||++.|++.+..+..-+|+++|.|....... . . -+|+.... .
T Consensus 255 G~vhfv~lsse~~~-~~~~~~~QY~WL~~dL~~v~r~~tPWlIv~~HrP~Y~S~~~-------~----~-~reG~~~~-~ 320 (452)
T KOG1378|consen 255 GGVHFVVLSTETYY-NFLKGTAQYQWLERDLASVDRKKTPWLIVQGHRPMYCSSND-------A----H-YREGEFES-M 320 (452)
T ss_pred ccEEEEEEeccccc-cccccchHHHHHHHHHHHhcccCCCeEEEEecccceecCCc-------h----h-hccCcchh-h
Confidence 46789999998632 11356789999999999987532344888999988643220 0 0 01211000 0
Q ss_pred hhHHHHHHHhCCCceEEEeCcccCCCccccCC------------------CeEEEEeCCcc-------------CCCCCC
Q 017278 290 EMGIMKILVKRTSVKAVFVGHNHGLDWCCPYQ------------------NLWLCFARHTG-------------YGGYGN 338 (374)
Q Consensus 290 n~~l~~~L~~~~~Vkaif~GH~H~nd~~~~~~------------------GI~l~~~~~tg-------------y~~yg~ 338 (374)
..-++.|.-..+|..+|.||+|..+-..+.. .|.+..|...| |.++..
T Consensus 321 -~~~LE~l~~~~~VDvvf~GHvH~YER~~piyn~~~~~~~~~~~~~d~~aPvyI~~G~~G~~e~~~~~~~~~p~~Sa~R~ 399 (452)
T KOG1378|consen 321 -REGLEPLFVKYKVDVVFWGHVHRYERFCPIYNNTCGTGWGPVHLVDGMAPIYITVGDGGNHEHLDPFSSPQPEWSAFRE 399 (452)
T ss_pred -HHHHHHHHHHhceeEEEeccceehhccchhhcceeeccCCcccccCCCCCEEEEEccCCcccccCcccCCCCccccccc
Confidence 1124444444699999999999876433221 24444444333 234444
Q ss_pred CCCeeEEEEEEcCCCceEEEEEccC--CcEEeeeec
Q 017278 339 WPRGARILEIMEQPFSLKSWIRMED--GSVHSEVIL 372 (374)
Q Consensus 339 ~~rG~R~iel~~~~~~i~Tw~R~~~--g~~~~~~~l 372 (374)
..-|+-+++........-+|+|..+ |.+.+.+.|
T Consensus 400 ~dfG~~~L~v~N~TH~~~~~~~~~d~~g~~~D~fwl 435 (452)
T KOG1378|consen 400 GDFGYTRLTAKNGTHAHVHWVRNSDASGVVIDSFWL 435 (452)
T ss_pred ccCCeEEEEEecCceEEEEEEeccCCCceEeeeEEE
Confidence 5568888888865566677998844 566666554
No 28
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=98.67 E-value=8e-07 Score=91.84 Aligned_cols=130 Identities=16% Similarity=0.193 Sum_probs=81.3
Q ss_pred ceEEEEEEeCCCC-CCCC------CCCHHHHHHHHHHHhhhCCCCCCCeEEEEccCccccccccccCCCCCCccCccccc
Q 017278 210 AVAYMYFLDSGGG-SYPE------VISSAQAEWFRHKAEEINPDSRVPEIVFWHIPSKAYKKVAPRFGVHKPCVGSINKE 282 (374)
Q Consensus 210 ~~~~L~~LDS~~g-~~~g------~I~~~Ql~WL~~~l~~~~~~~~~p~LvF~HhP~~~~~~~~~~~g~~~~~~g~~n~e 282 (374)
+.++++.||+.-. .... .-..+|++||..+|.+.+.. +..+=+..|||+-... |.-++.
T Consensus 314 ~Glr~IslNt~~c~~~N~~L~~n~tdp~~~lqWf~~~L~~ae~~-GekVhil~HIPpG~~~-----------c~~~ws-- 379 (577)
T KOG3770|consen 314 DGLRLISLNTNYCSAPNFWLYANQTDPIDQLQWFVDQLQEAESA-GEKVHILGHIPPGDGV-----------CLEGWS-- 379 (577)
T ss_pred CCceEEEeccccccccceeeeecCCCchHHhhHHHHHHHHHHhc-CCEEEEEEeeCCCCcc-----------hhhhhh--
Confidence 4788999999862 2222 23456899999999987643 3468899999996311 111121
Q ss_pred chhhhhhhhHHHHHHHhCC-CceEEEeCcccCCCccccCC---CeEEEEe-CCccCCCCCCCCCeeEEEEEEcC-C---C
Q 017278 283 SVAAQEAEMGIMKILVKRT-SVKAVFVGHNHGLDWCCPYQ---NLWLCFA-RHTGYGGYGNWPRGARILEIMEQ-P---F 353 (374)
Q Consensus 283 ~v~~~~~n~~l~~~L~~~~-~Vkaif~GH~H~nd~~~~~~---GI~l~~~-~~tgy~~yg~~~rG~R~iel~~~-~---~ 353 (374)
..+...+.++. -|.+.|.||.|.+.|-..+. |-.+... -..+...|-+..||+|+.+++.. + -
T Consensus 380 --------~~f~~iv~r~~~tI~gqf~GH~h~d~f~v~yde~~~~p~~v~~i~~svtty~~~~p~yr~y~~~~~~~~~~~ 451 (577)
T KOG3770|consen 380 --------INFYRIVNRFRSTIAGQFYGHTHIDEFRVFYDEETGHPIAVAYIGPSVTTYYNKNPGYRIYAVDSTISFSVP 451 (577)
T ss_pred --------HHHHHHHHHHHHhhhhhccccCcceeEEEEeccccCCceeeeeccccceehhccCCCceecccCcccceecc
Confidence 23666666554 47789999999977643221 1111111 11223455577899999999832 1 4
Q ss_pred ceEEEEEc
Q 017278 354 SLKSWIRM 361 (374)
Q Consensus 354 ~i~Tw~R~ 361 (374)
+++||++.
T Consensus 452 d~~ty~~N 459 (577)
T KOG3770|consen 452 DHRTYFYN 459 (577)
T ss_pred cceEEEEe
Confidence 67888754
No 29
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=98.66 E-value=2e-07 Score=80.53 Aligned_cols=55 Identities=25% Similarity=0.334 Sum_probs=41.3
Q ss_pred HHHHHHhCCCceEEEeCcccCCCccccCCCeEEEEeCCccCCCCCCCCCeeEEEEEEc
Q 017278 293 IMKILVKRTSVKAVFVGHNHGLDWCCPYQNLWLCFARHTGYGGYGNWPRGARILEIME 350 (374)
Q Consensus 293 l~~~L~~~~~Vkaif~GH~H~nd~~~~~~GI~l~~~~~tgy~~yg~~~rG~R~iel~~ 350 (374)
+.+.+. ..+++++++||.|+. ......|+.+++.++.+....++ .+++-++++.+
T Consensus 101 ~~~~~~-~~~~~~~~~GH~H~~-~~~~~~~~~~~~~Gs~~~~~~~~-~~~~~i~~~~~ 155 (156)
T PF12850_consen 101 LREILS-RENVDLVLHGHTHRP-QVFKIGGIHVINPGSIGGPRHGD-QSGYAILDIED 155 (156)
T ss_dssp HHHHHH-HTTSSEEEESSSSSE-EEEEETTEEEEEE-GSSS-SSSS-SEEEEEEEETT
T ss_pred hhhhhc-ccCCCEEEcCCcccc-eEEEECCEEEEECCcCCCCCCCC-CCEEEEEEEec
Confidence 334444 579999999999984 44556899999998888766666 89999999864
No 30
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=98.63 E-value=9.3e-07 Score=84.84 Aligned_cols=65 Identities=28% Similarity=0.439 Sum_probs=39.5
Q ss_pred CCeEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHhcccCC--------CCC--HHHH---HHHHHhhHHHcCCCEEEe
Q 017278 55 GPFKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHETP--------VAN--ASLY---WDQAISPTRVRGIPWASI 121 (374)
Q Consensus 55 g~fkI~QlTDlHl~~~~~~~~g~~~d~~t~~~l~~vL~~e~P--------i~~--~~~~---~~~~~~~l~~~~iP~~~v 121 (374)
..+||+||||+|++... .....+.+.+.+++++| +.+ .... +.++++.|.. ..|+++|
T Consensus 48 ~~~rI~~lSDlH~~~~~--------~~~~l~~~v~~i~~~~pDlVli~GD~~d~~~~~~~~~~~~~L~~L~~-~~pv~~V 118 (271)
T PRK11340 48 APFKILFLADLHYSRFV--------PLSLISDAIALGIEQKPDLILLGGDYVLFDMPLNFSAFSDVLSPLAE-CAPTFAC 118 (271)
T ss_pred CCcEEEEEcccCCCCcC--------CHHHHHHHHHHHHhcCCCEEEEccCcCCCCccccHHHHHHHHHHHhh-cCCEEEe
Confidence 45999999999996431 11223333344555788 122 2222 3344444544 3799999
Q ss_pred cCCCCCC
Q 017278 122 FGNHDDA 128 (374)
Q Consensus 122 ~GNHD~~ 128 (374)
+||||..
T Consensus 119 ~GNHD~~ 125 (271)
T PRK11340 119 FGNHDRP 125 (271)
T ss_pred cCCCCcc
Confidence 9999975
No 31
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=98.52 E-value=4.2e-06 Score=77.04 Aligned_cols=66 Identities=15% Similarity=0.269 Sum_probs=39.9
Q ss_pred CeEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHhcccCC--------CCC-HHHHHHHHHhhHHH--cCCCEEEecCC
Q 017278 56 PFKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHETP--------VAN-ASLYWDQAISPTRV--RGIPWASIFGN 124 (374)
Q Consensus 56 ~fkI~QlTDlHl~~~~~~~~g~~~d~~t~~~l~~vL~~e~P--------i~~-~~~~~~~~~~~l~~--~~iP~~~v~GN 124 (374)
.+||+++||+|++... .....+.+.+.+.+++| +.+ .......+.+.+.. ..+|+++++||
T Consensus 1 ~~~i~~~sDlH~~~~~--------~~~~~~~~~~~~~~~~~d~vl~~GD~~~~~~~~~~~~~~~l~~l~~~~~v~~v~GN 72 (223)
T cd07385 1 GLRIAHLSDLHLGPFV--------SRERLERLVEKINALKPDLVVLTGDLVDGSVDVLELLLELLKKLKAPLGVYAVLGN 72 (223)
T ss_pred CCEEEEEeecCCCccC--------CHHHHHHHHHHHhccCCCEEEEcCcccCCcchhhHHHHHHHhccCCCCCEEEECCC
Confidence 4799999999997643 12233444444555677 111 11111344444444 35899999999
Q ss_pred CCCCC
Q 017278 125 HDDAP 129 (374)
Q Consensus 125 HD~~~ 129 (374)
||...
T Consensus 73 HD~~~ 77 (223)
T cd07385 73 HDYYS 77 (223)
T ss_pred ccccc
Confidence 99763
No 32
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=98.51 E-value=6.5e-07 Score=84.29 Aligned_cols=58 Identities=16% Similarity=0.213 Sum_probs=35.4
Q ss_pred hHHHHHHHhCCCceEEEeCcccCCCccc-cCCCeEEEEeCCccCCCCCCCCCeeEEEEEEcCCCce
Q 017278 291 MGIMKILVKRTSVKAVFVGHNHGLDWCC-PYQNLWLCFARHTGYGGYGNWPRGARILEIMEQPFSL 355 (374)
Q Consensus 291 ~~l~~~L~~~~~Vkaif~GH~H~nd~~~-~~~GI~l~~~~~tgy~~yg~~~rG~R~iel~~~~~~i 355 (374)
..+.+.+.+ .++..++|||.|+..... ...++. ..|-..|+|.....+++++.++.++
T Consensus 177 ~~~~~~~~~-~~~~~~i~GH~H~~~~~~~~~~~~~------~~~~~lgdw~~~~~~~~~~~~~~~~ 235 (241)
T PRK05340 177 EAVAALMEK-HGVDTLIHGHTHRPAIHQLQAGGQP------ATRIVLGDWHEQGSVLKVDADGVEL 235 (241)
T ss_pred HHHHHHHHH-hCCCEEEECcccCcceeeccCCCcc------eEEEEeCCCCCCCeEEEEECCceEE
Confidence 345566655 489999999999854211 111111 1245567777777788888754333
No 33
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=98.46 E-value=1.1e-05 Score=75.99 Aligned_cols=58 Identities=22% Similarity=0.267 Sum_probs=37.3
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHhcccCC----C-CCHHHHHHHHHhhHHHcCCCEEEecCCCCCC
Q 017278 57 FKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHETP----V-ANASLYWDQAISPTRVRGIPWASIFGNHDDA 128 (374)
Q Consensus 57 fkI~QlTDlHl~~~~~~~~g~~~d~~t~~~l~~vL~~e~P----i-~~~~~~~~~~~~~l~~~~iP~~~v~GNHD~~ 128 (374)
+||++|||+|.... ... .+.+++.+| + -|-...-.++++.|..+..|+++++||||..
T Consensus 1 ~rIa~isDiHg~~~----------~~~----~~~l~~~~pD~Vl~~GDi~~~~~~~~~~l~~l~~p~~~V~GNHD~~ 63 (238)
T cd07397 1 LRIAIVGDVHGQWD----------LED----IKALHLLQPDLVLFVGDFGNESVQLVRAISSLPLPKAVILGNHDAW 63 (238)
T ss_pred CEEEEEecCCCCch----------HHH----HHHHhccCCCEEEECCCCCcChHHHHHHHHhCCCCeEEEcCCCccc
Confidence 68999999995321 111 124555677 1 1211112357777888889999999999974
No 34
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=3.4e-06 Score=79.64 Aligned_cols=84 Identities=19% Similarity=0.206 Sum_probs=59.6
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCCeEEEEccCccccccccccCCCCCCccCcccccchhhhhhhhHHHHHHHhCCCceEEE
Q 017278 228 ISSAQAEWFRHKAEEINPDSRVPEIVFWHIPSKAYKKVAPRFGVHKPCVGSINKESVAAQEAEMGIMKILVKRTSVKAVF 307 (374)
Q Consensus 228 I~~~Ql~WL~~~l~~~~~~~~~p~LvF~HhP~~~~~~~~~~~g~~~~~~g~~n~e~v~~~~~n~~l~~~L~~~~~Vkaif 307 (374)
+...++.||+..|++..+ +-.||.-|||+.....- | ...+. +..++-+|++ .+|.+.+
T Consensus 191 ~~~~~l~~le~~L~~S~a---~wkiVvGHh~i~S~~~H-----------G----~T~eL---~~~LlPiL~~-n~VdlY~ 248 (336)
T KOG2679|consen 191 YLRALLSWLEVALKASRA---KWKIVVGHHPIKSAGHH-----------G----PTKEL---EKQLLPILEA-NGVDLYI 248 (336)
T ss_pred HHHHHHHHHHHHHHHhhc---ceEEEecccceehhhcc-----------C----ChHHH---HHHHHHHHHh-cCCcEEE
Confidence 567789999999998663 67899999999764321 1 11111 1456667754 6999999
Q ss_pred eCcccCCCcccc-CCCeEEEEeCCccC
Q 017278 308 VGHNHGLDWCCP-YQNLWLCFARHTGY 333 (374)
Q Consensus 308 ~GH~H~nd~~~~-~~GI~l~~~~~tgy 333 (374)
|||||.-..... -.+|+++.+++...
T Consensus 249 nGHDHcLQhis~~e~~iqf~tSGagSk 275 (336)
T KOG2679|consen 249 NGHDHCLQHISSPESGIQFVTSGAGSK 275 (336)
T ss_pred ecchhhhhhccCCCCCeeEEeeCCccc
Confidence 999997554333 68999998775543
No 35
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=98.37 E-value=0.00011 Score=74.54 Aligned_cols=70 Identities=14% Similarity=0.275 Sum_probs=44.9
Q ss_pred eEEEEEecCCCCCCCCCCCCCCC--C-hhHHHHHHHHhcccCC--------CCC----H---HHHHHHHHhhHHHcCCCE
Q 017278 57 FKISLFADLHFGENAWTDWGPLQ--D-FNSVKVMSTVLDHETP--------VAN----A---SLYWDQAISPTRVRGIPW 118 (374)
Q Consensus 57 fkI~QlTDlHl~~~~~~~~g~~~--d-~~t~~~l~~vL~~e~P--------i~~----~---~~~~~~~~~~l~~~~iP~ 118 (374)
+||+++||+|+|.... +... + ....+.|.+.+.+++| +.| . ...+.+++..|.+.++|+
T Consensus 1 mkilh~SDlHlG~~~~---~~~~~~~~~~~l~~l~~~i~~~~~D~viIaGDifD~~~p~~~a~~~~~~~l~~L~~~~~~v 77 (407)
T PRK10966 1 MRILHTSDWHLGQNFY---SKSRAAEHQAFLDWLLEQVQEHQVDAIIVAGDIFDTGSPPSYARELYNRFVVNLQQTGCQL 77 (407)
T ss_pred CEEEEEcccCCCCccc---CcccHHHHHHHHHHHHHHHHhcCCCEEEECCccccCCCCcHHHHHHHHHHHHHHHhcCCcE
Confidence 6999999999986432 1111 1 1223445455556788 112 1 123456777788889999
Q ss_pred EEecCCCCCCC
Q 017278 119 ASIFGNHDDAP 129 (374)
Q Consensus 119 ~~v~GNHD~~~ 129 (374)
++|+||||...
T Consensus 78 ~~I~GNHD~~~ 88 (407)
T PRK10966 78 VVLAGNHDSVA 88 (407)
T ss_pred EEEcCCCCChh
Confidence 99999999753
No 36
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=98.33 E-value=1.1e-05 Score=70.73 Aligned_cols=56 Identities=16% Similarity=0.156 Sum_probs=37.6
Q ss_pred HHHHHHhCCCceEEEeCcccCCCccccCCCeEEEEeCCccCCCCCCCCCeeEEEEEEc
Q 017278 293 IMKILVKRTSVKAVFVGHNHGLDWCCPYQNLWLCFARHTGYGGYGNWPRGARILEIME 350 (374)
Q Consensus 293 l~~~L~~~~~Vkaif~GH~H~nd~~~~~~GI~l~~~~~tgy~~yg~~~rG~R~iel~~ 350 (374)
.+..+.+..++..++|||.|.. +...+.|+.++..++.+- ......++|-++++++
T Consensus 97 ~l~~~~~~~~~d~vi~GHtH~~-~~~~~~~~~~iNpGs~~~-~~~~~~~~~~il~~~~ 152 (158)
T TIGR00040 97 VLEYLAKELGVDVLIFGHTHIP-VAEELRGILLINPGSLTG-PRNGNTPSYAILDVDK 152 (158)
T ss_pred HHHHHHhccCCCEEEECCCCCC-ccEEECCEEEEECCcccc-ccCCCCCeEEEEEecC
Confidence 3445555578899999999984 446678998886665442 2222256888888764
No 37
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=98.31 E-value=6.1e-06 Score=72.79 Aligned_cols=66 Identities=20% Similarity=0.352 Sum_probs=40.5
Q ss_pred EEEecCCCCCCCCCCCCCC-----CChhHHHHHHHHhcccCC--------CCC-----HHHHHHHHHhhHHH-----cCC
Q 017278 60 SLFADLHFGENAWTDWGPL-----QDFNSVKVMSTVLDHETP--------VAN-----ASLYWDQAISPTRV-----RGI 116 (374)
Q Consensus 60 ~QlTDlHl~~~~~~~~g~~-----~d~~t~~~l~~vL~~e~P--------i~~-----~~~~~~~~~~~l~~-----~~i 116 (374)
+.|||+|++.... +.. .+....+.++++++..+| +.+ ....|...+..+.+ .++
T Consensus 1 ~~isD~HL~~~~~---~~~l~~~~~~~~~~~~~~~~i~~~~pd~vv~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (156)
T cd08165 1 MFLADTHLLGSIL---GHWLDKLRREWQMERSFQTSLWLLQPDVVFVLGDLFDEGKWSTDEEWEDYVERFKKMFGHPPDL 77 (156)
T ss_pred CccccchhcCCcc---cHHHHHHhhhHHHHHHHHHHHHhcCCCEEEECCCCCCCCccCCHHHHHHHHHHHHHHhccCCCC
Confidence 4689999965432 122 334566678888888889 111 12234333333322 368
Q ss_pred CEEEecCCCCCC
Q 017278 117 PWASIFGNHDDA 128 (374)
Q Consensus 117 P~~~v~GNHD~~ 128 (374)
|+++++||||..
T Consensus 78 ~i~~v~GNHD~~ 89 (156)
T cd08165 78 PLHVVVGNHDIG 89 (156)
T ss_pred eEEEEcCCCCcC
Confidence 999999999974
No 38
>PRK09453 phosphodiesterase; Provisional
Probab=98.18 E-value=6.1e-05 Score=67.75 Aligned_cols=66 Identities=23% Similarity=0.274 Sum_probs=41.2
Q ss_pred CCceEEEeCcccCCCccccCCCeEEEEeCCccCCCCCCCCCeeEEEEEEcCCCceEEEEEccCCcEEeeeecC
Q 017278 301 TSVKAVFVGHNHGLDWCCPYQNLWLCFARHTGYGGYGNWPRGARILEIMEQPFSLKSWIRMEDGSVHSEVILS 373 (374)
Q Consensus 301 ~~Vkaif~GH~H~nd~~~~~~GI~l~~~~~tgy~~yg~~~rG~R~iel~~~~~~i~Tw~R~~~g~~~~~~~l~ 373 (374)
.+...++|||.|. .+.....|+.++-.++.|. ..++..+.|=++++ + .+ +-+.++++++.++|.+|
T Consensus 117 ~~~d~vi~GHtH~-p~~~~~~~~~~iNpGs~~~-p~~~~~~s~~il~~--~--~~-~~~~~~~~~~~~~~~~~ 182 (182)
T PRK09453 117 HDGDVLVYGHTHI-PVAEKQGGIILFNPGSVSL-PKGGYPASYGILDD--N--VL-SVIDLEGGEVIAQVAIN 182 (182)
T ss_pred cCCCEEEECCCCC-CcceEECCEEEEECCCccc-cCCCCCCeEEEEEC--C--cE-EEEECCCCeEEEeeccC
Confidence 3467899999998 4545667887777665553 22333334444443 2 11 22477888999988765
No 39
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=98.16 E-value=0.00033 Score=63.18 Aligned_cols=72 Identities=15% Similarity=0.141 Sum_probs=46.1
Q ss_pred HHHHhCCCceEEEeCcccCCCccccCCCeEEEEeCCccCC--CCC-CCCCeeEEEEEEcCCCceE-EEEEccCCcEEee
Q 017278 295 KILVKRTSVKAVFVGHNHGLDWCCPYQNLWLCFARHTGYG--GYG-NWPRGARILEIMEQPFSLK-SWIRMEDGSVHSE 369 (374)
Q Consensus 295 ~~L~~~~~Vkaif~GH~H~nd~~~~~~GI~l~~~~~tgy~--~yg-~~~rG~R~iel~~~~~~i~-Tw~R~~~g~~~~~ 369 (374)
..+.+..++..++|||.|. .++....|+.++--++.|.. +-+ +..+.|-++++++. .++ .++++.++++..+
T Consensus 99 ~~~~~~~~~dvii~GHTH~-p~~~~~~g~~viNPGSv~~~~~~~~~~~~~syail~~~~~--~~~~~~~~l~~~~~~~~ 174 (178)
T cd07394 99 AALQRQLDVDILISGHTHK-FEAFEHEGKFFINPGSATGAFSPLDPNVIPSFVLMDIQGS--KVVTYVYQLIDGEVKVE 174 (178)
T ss_pred HHHHHhcCCCEEEECCCCc-ceEEEECCEEEEECCCCCCCCCCCCCCCCCeEEEEEecCC--eEEEEEEEEECCcEEEE
Confidence 3334446788999999998 45566788888876666531 111 22356677776543 455 4678888876544
No 40
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=98.07 E-value=0.00098 Score=61.84 Aligned_cols=100 Identities=13% Similarity=0.040 Sum_probs=54.5
Q ss_pred CCCCHHHHHHHHHHHhhhCCCCCCCe-EEEEccCccccccccccCCCCCCccCcccccchhhhhhhhHHHHHHHhCCCce
Q 017278 226 EVISSAQAEWFRHKAEEINPDSRVPE-IVFWHIPSKAYKKVAPRFGVHKPCVGSINKESVAAQEAEMGIMKILVKRTSVK 304 (374)
Q Consensus 226 g~I~~~Ql~WL~~~l~~~~~~~~~p~-LvF~HhP~~~~~~~~~~~g~~~~~~g~~n~e~v~~~~~n~~l~~~L~~~~~Vk 304 (374)
..++++++.=.-+.+-... ..+. ++.+|.||......-. .| ...+++ .++.+.+.+ -+..
T Consensus 117 ~e~~E~~I~s~l~~~v~~~---~~~~~Il~~HaPP~gt~~d~~--------~g---~~hvGS----~~vr~~iee-fqP~ 177 (226)
T COG2129 117 REFSEDEIYSKLKSLVKKA---DNPVNILLTHAPPYGTLLDTP--------SG---YVHVGS----KAVRKLIEE-FQPL 177 (226)
T ss_pred cccCHHHHHHHHHHHHhcc---cCcceEEEecCCCCCccccCC--------CC---ccccch----HHHHHHHHH-hCCc
Confidence 4577777644333332211 1222 8889999976533210 01 012222 245566655 4778
Q ss_pred EEEeCcccCCCccccCCCeEEEEeCCccCCCCCCCCCeeEEEEEEcC
Q 017278 305 AVFVGHNHGLDWCCPYQNLWLCFARHTGYGGYGNWPRGARILEIMEQ 351 (374)
Q Consensus 305 aif~GH~H~nd~~~~~~GI~l~~~~~tgy~~yg~~~rG~R~iel~~~ 351 (374)
+.+|||+|. .-+..-=|=.++..|+. -..+.|-++++...
T Consensus 178 l~i~GHIHE-s~G~d~iG~TivVNPG~------~~~g~yA~i~l~~~ 217 (226)
T COG2129 178 LGLHGHIHE-SRGIDKIGNTIVVNPGP------LGEGRYALIELEKE 217 (226)
T ss_pred eEEEeeecc-cccccccCCeEEECCCC------ccCceEEEEEecCc
Confidence 999999997 33333334466666644 12366778888743
No 41
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.02 E-value=2.4e-05 Score=73.06 Aligned_cols=112 Identities=18% Similarity=0.267 Sum_probs=59.3
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCCeEEEEccCcccccccc-ccCCCCCCccCcccccc----hhhhhhhhHHHHHHHhCCC
Q 017278 228 ISSAQAEWFRHKAEEINPDSRVPEIVFWHIPSKAYKKVA-PRFGVHKPCVGSINKES----VAAQEAEMGIMKILVKRTS 302 (374)
Q Consensus 228 I~~~Ql~WL~~~l~~~~~~~~~p~LvF~HhP~~~~~~~~-~~~g~~~~~~g~~n~e~----v~~~~~n~~l~~~L~~~~~ 302 (374)
....+-.||+...... .-..+|.+.|+. ..... ..+... .+++..+ +..-+.+.+......+..+
T Consensus 118 t~~~~y~~~r~~~~~~-----~~~~lflnl~l~-~R~ri~~k~r~~----s~~~k~~~~~~~~i~d~~~~~v~~~~~~~~ 187 (237)
T COG2908 118 TDDRAYQWFRYKVHWA-----WLQLLFLNLPLR-VRRRIAYKIRSL----SSWAKKKVKKAVNIMDVNPAAVADEARRHG 187 (237)
T ss_pred chHHHHHHHHHHcccH-----HHHHHHHHhHHH-HHHHHHHHHHHh----hHHhHHhhhhHHHHHHhhHHHHHHHHHHcC
Confidence 4556778888776431 225678888876 21100 000000 0011111 1111334455555666789
Q ss_pred ceEEEeCcccCCCccccCCCeEEEEeCCccCCCCCCCCCeeEEEEEEcCCCceEEE
Q 017278 303 VKAVFVGHNHGLDWCCPYQNLWLCFARHTGYGGYGNWPRGARILEIMEQPFSLKSW 358 (374)
Q Consensus 303 Vkaif~GH~H~nd~~~~~~GI~l~~~~~tgy~~yg~~~rG~R~iel~~~~~~i~Tw 358 (374)
|..++|||+|.+.. -...|+..|..+ +|..-.-+++.+++.-++.+|
T Consensus 188 vd~vI~GH~Hr~ai-~~i~~~~yi~lG--------dW~~~~s~~~v~~~~~~~~~~ 234 (237)
T COG2908 188 VDGVIHGHTHRPAI-HNIPGITYINLG--------DWVSEGSILEVDDGGLELIQL 234 (237)
T ss_pred CCEEEecCcccHhh-ccCCCceEEecC--------cchhcceEEEEecCcEEEeec
Confidence 99999999999765 455676555543 444434466666554344333
No 42
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=97.98 E-value=0.0001 Score=62.86 Aligned_cols=27 Identities=22% Similarity=0.072 Sum_probs=20.9
Q ss_pred HHHHHHHHhhHHHcCCC-EEEecCCCCC
Q 017278 101 SLYWDQAISPTRVRGIP-WASIFGNHDD 127 (374)
Q Consensus 101 ~~~~~~~~~~l~~~~iP-~~~v~GNHD~ 127 (374)
...+..+.+.+.+.+.| +++++||||.
T Consensus 35 ~~~~~~~~~~l~~~~~~~~~~v~GNHD~ 62 (135)
T cd07379 35 LEELQKFLDWLKSLPHPHKIVIAGNHDL 62 (135)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEECCCCC
Confidence 34567788888887776 4789999995
No 43
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.96 E-value=1.3e-05 Score=76.24 Aligned_cols=70 Identities=20% Similarity=0.210 Sum_probs=44.0
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCChhHHHHHHH---HhcccCC--------CCC----H---HHHHHHHHhhHHHcC-CC
Q 017278 57 FKISLFADLHFGENAWTDWGPLQDFNSVKVMST---VLDHETP--------VAN----A---SLYWDQAISPTRVRG-IP 117 (374)
Q Consensus 57 fkI~QlTDlHl~~~~~~~~g~~~d~~t~~~l~~---vL~~e~P--------i~~----~---~~~~~~~~~~l~~~~-iP 117 (374)
+||+++||+|++..... .....+....+++ .+.+++| +.+ + ...+.++++.|.+.+ +|
T Consensus 1 mkilh~SD~Hlg~~~~~---~~~~~~~~~~l~~l~~~~~~~~~D~lli~GDi~d~~~p~~~~~~~~~~~l~~l~~~~~i~ 77 (253)
T TIGR00619 1 MRILHTSDWHLGKTLEG---VSRLAEQKAFLDDLLEFAKAEQIDALLVAGDVFDTANPPAEAQELFNAFFRNLSDANPIP 77 (253)
T ss_pred CEEEEEhhhcCCCccCC---CChHHHHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHHHHHHHHHHHhcCCce
Confidence 69999999999875321 1111122333444 4445677 111 1 223567777888777 99
Q ss_pred EEEecCCCCCCC
Q 017278 118 WASIFGNHDDAP 129 (374)
Q Consensus 118 ~~~v~GNHD~~~ 129 (374)
+++++||||...
T Consensus 78 v~~i~GNHD~~~ 89 (253)
T TIGR00619 78 IVVISGNHDSAQ 89 (253)
T ss_pred EEEEccCCCChh
Confidence 999999999753
No 44
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=97.91 E-value=4.2e-05 Score=70.06 Aligned_cols=37 Identities=19% Similarity=0.203 Sum_probs=25.5
Q ss_pred HHHHHHHhCCCceEEEeCcccCCCccccCCCeEEEEeC
Q 017278 292 GIMKILVKRTSVKAVFVGHNHGLDWCCPYQNLWLCFAR 329 (374)
Q Consensus 292 ~l~~~L~~~~~Vkaif~GH~H~nd~~~~~~GI~l~~~~ 329 (374)
.....+.+..+++.++|||.|+.. ...+.++.++.++
T Consensus 179 ~~~~~~~~~~~~~~~i~GH~H~~~-~~~~~~~~~~n~G 215 (217)
T cd07398 179 EAVARLARRKGVDGVICGHTHRPA-LHELDGKLYINLG 215 (217)
T ss_pred HHHHHHHHhcCCCEEEECCCCCCC-eEEECCEEEEECC
Confidence 444444456899999999999953 3556676665544
No 45
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=97.89 E-value=0.00027 Score=65.61 Aligned_cols=26 Identities=23% Similarity=0.224 Sum_probs=20.0
Q ss_pred HHHHHHhhHHHcCCCEEEecCCCCCC
Q 017278 103 YWDQAISPTRVRGIPWASIFGNHDDA 128 (374)
Q Consensus 103 ~~~~~~~~l~~~~iP~~~v~GNHD~~ 128 (374)
.|+.+...|..+++|.+++|||||..
T Consensus 77 ~~~~ff~~L~~~~~p~~~vPG~~Dap 102 (255)
T PF14582_consen 77 ALDKFFRILGELGVPVFVVPGNMDAP 102 (255)
T ss_dssp HHHHHHHHHHCC-SEEEEE--TTS-S
T ss_pred HHHHHHHHHHhcCCcEEEecCCCCch
Confidence 46699999999999999999999975
No 46
>PHA02546 47 endonuclease subunit; Provisional
Probab=97.78 E-value=3.1e-05 Score=76.80 Aligned_cols=69 Identities=20% Similarity=0.274 Sum_probs=42.6
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHhc---ccCC--------C-CC----HHH---HHHH-HHhhHHHcCC
Q 017278 57 FKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLD---HETP--------V-AN----ASL---YWDQ-AISPTRVRGI 116 (374)
Q Consensus 57 fkI~QlTDlHl~~~~~~~~g~~~d~~t~~~l~~vL~---~e~P--------i-~~----~~~---~~~~-~~~~l~~~~i 116 (374)
+||+|+||+|+|.... ++.......+.++++++ +++| + .. ... ...+ +.+.|.+.++
T Consensus 1 MKilhiSD~HLG~~~~---~~~~~~~~~~~l~~ii~~a~~~~vD~VliaGDlfD~~~~~~~~~~~~~~~~l~~~L~~~gi 77 (340)
T PHA02546 1 MKILLIGDQHLGVRKD---DPWFQNYQLKFIKQAIEYSKAHGITTWIQLGDTFDVRKAITQNTMNFVREKIFDLLKEAGI 77 (340)
T ss_pred CeEEEEeeecCCCcCC---ChhhHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 6999999999986532 11111223344555443 4677 1 11 111 2223 5667888899
Q ss_pred CEEEecCCCCCC
Q 017278 117 PWASIFGNHDDA 128 (374)
Q Consensus 117 P~~~v~GNHD~~ 128 (374)
|+++++||||..
T Consensus 78 ~v~~I~GNHD~~ 89 (340)
T PHA02546 78 TLHVLVGNHDMY 89 (340)
T ss_pred eEEEEccCCCcc
Confidence 999999999964
No 47
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=97.74 E-value=0.00078 Score=58.50 Aligned_cols=49 Identities=22% Similarity=0.169 Sum_probs=35.9
Q ss_pred CCCceEEEeCcccCCCccccCCCeEEEEeCCccCCCCCCCCCeeEEEEEEc
Q 017278 300 RTSVKAVFVGHNHGLDWCCPYQNLWLCFARHTGYGGYGNWPRGARILEIME 350 (374)
Q Consensus 300 ~~~Vkaif~GH~H~nd~~~~~~GI~l~~~~~tgy~~yg~~~rG~R~iel~~ 350 (374)
..++..++|||.|... ....+|+.++..++.|.. .++..++|.++++++
T Consensus 100 ~~~~d~vi~GHtH~~~-~~~~~~~~~inpGs~~~~-~~~~~~~~~i~~~~~ 148 (155)
T cd00841 100 EGGADVVLYGHTHIPV-IEKIGGVLLLNPGSLSLP-RGGGPPTYAILEIDD 148 (155)
T ss_pred hcCCCEEEECcccCCc-cEEECCEEEEeCCCccCc-CCCCCCeEEEEEecC
Confidence 4578999999999854 456688888887766632 223467899999875
No 48
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=97.66 E-value=0.0046 Score=59.29 Aligned_cols=34 Identities=12% Similarity=0.233 Sum_probs=23.4
Q ss_pred HHHHhCCCceEEEeCcccCCCccc-cCCCeEEEEeC
Q 017278 295 KILVKRTSVKAVFVGHNHGLDWCC-PYQNLWLCFAR 329 (374)
Q Consensus 295 ~~L~~~~~Vkaif~GH~H~nd~~~-~~~GI~l~~~~ 329 (374)
++..+.++|.+|++||.|. .++. ..+++.++-++
T Consensus 211 ~la~~~~~vD~IlgGHsH~-~~~~~~~~~~~v~q~g 245 (277)
T cd07410 211 ELAEEVPGIDAILTGHQHR-RFPGPTVNGVPVVQPG 245 (277)
T ss_pred HHHhcCCCCcEEEeCCCcc-ccccCCcCCEEEEcCC
Confidence 3444558999999999998 4444 45666665543
No 49
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=97.57 E-value=0.00011 Score=73.94 Aligned_cols=70 Identities=26% Similarity=0.312 Sum_probs=41.8
Q ss_pred eEEEEEecCCCCC-CCCCCCCCCCChhHHHHHHHHhc---ccCC--------C-C---CHHHHH---HHHHhhHHHcCCC
Q 017278 57 FKISLFADLHFGE-NAWTDWGPLQDFNSVKVMSTVLD---HETP--------V-A---NASLYW---DQAISPTRVRGIP 117 (374)
Q Consensus 57 fkI~QlTDlHl~~-~~~~~~g~~~d~~t~~~l~~vL~---~e~P--------i-~---~~~~~~---~~~~~~l~~~~iP 117 (374)
+||++.||+|+|. ... ++.....-.+.+..+++ ++++ + . .+..+. .+++..|.+.+||
T Consensus 1 mkilHtSD~HLG~~~~~---~~~r~~d~~~~f~~~l~~a~~~~vD~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ip 77 (390)
T COG0420 1 MKILHTSDWHLGSKQLN---LPSRLEDQKKAFDELLEIAKEEKVDFVLIAGDLFDTNNPSPRALKLFLEALRRLKDAGIP 77 (390)
T ss_pred CeeEEecccccchhhcc---CccchHHHHHHHHHHHHHHHHccCCEEEEccccccCCCCCHHHHHHHHHHHHHhccCCCc
Confidence 6999999999993 221 12222233334444333 3555 1 1 134444 4455555566799
Q ss_pred EEEecCCCCCCC
Q 017278 118 WASIFGNHDDAP 129 (374)
Q Consensus 118 ~~~v~GNHD~~~ 129 (374)
+++++||||...
T Consensus 78 v~~I~GNHD~~~ 89 (390)
T COG0420 78 VVVIAGNHDSPS 89 (390)
T ss_pred EEEecCCCCchh
Confidence 999999999864
No 50
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=97.43 E-value=0.0069 Score=57.64 Aligned_cols=30 Identities=10% Similarity=0.102 Sum_probs=22.5
Q ss_pred hCCCceEEEeCcccCCCccccCCCeEEEEeC
Q 017278 299 KRTSVKAVFVGHNHGLDWCCPYQNLWLCFAR 329 (374)
Q Consensus 299 ~~~~Vkaif~GH~H~nd~~~~~~GI~l~~~~ 329 (374)
+.++|.+|+.||.|. ..+...+|..+..++
T Consensus 192 ~~~~iD~IlgGH~H~-~~~~~~~~t~vv~~g 221 (257)
T cd07406 192 EVPEIDLILGGHDHE-YILVQVGGTPIVKSG 221 (257)
T ss_pred hCCCCceEEecccce-eEeeeECCEEEEeCC
Confidence 458899999999998 445566777666654
No 51
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=97.23 E-value=0.00045 Score=64.71 Aligned_cols=71 Identities=24% Similarity=0.278 Sum_probs=46.9
Q ss_pred EEEEEecCCCCCCCC-CCCC---C-CCChhHHHHHHHHhcccCC---C--CC------HHHHHHHHHhhHHHcCCCEEEe
Q 017278 58 KISLFADLHFGENAW-TDWG---P-LQDFNSVKVMSTVLDHETP---V--AN------ASLYWDQAISPTRVRGIPWASI 121 (374)
Q Consensus 58 kI~QlTDlHl~~~~~-~~~g---~-~~d~~t~~~l~~vL~~e~P---i--~~------~~~~~~~~~~~l~~~~iP~~~v 121 (374)
+.+++||+|++.... ...| | .+..++.+.+.+++++.+| + -| ....+..+.+.++....++.+|
T Consensus 16 ~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~~li~~~~~d~vIi~GDl~h~~~~~~~~~~~~~~l~~~~~~v~~V 95 (225)
T TIGR00024 16 DKAVIADLHLGFERHLDEQGVMVPGFQFREIIERALSIADKYGIEALIINGDLKHEFKKGLEWRFIREFIEVTFRDLILI 95 (225)
T ss_pred CeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHHHHHhhcCCCEEEEcCccccccCChHHHHHHHHHHHhcCCcEEEE
Confidence 489999999986432 1112 1 1223456666666666777 1 11 1156777778888888899999
Q ss_pred cCCCCCC
Q 017278 122 FGNHDDA 128 (374)
Q Consensus 122 ~GNHD~~ 128 (374)
+||||..
T Consensus 96 ~GNHD~~ 102 (225)
T TIGR00024 96 RGNHDAL 102 (225)
T ss_pred CCCCCCc
Confidence 9999964
No 52
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=97.20 E-value=0.0048 Score=56.50 Aligned_cols=69 Identities=17% Similarity=0.096 Sum_probs=38.2
Q ss_pred EEEecCCCCCCCCCCC--CC----CCChhHHHHHHHHhcccCC--------CCC-----HHHHHH----HHHhhHH-HcC
Q 017278 60 SLFADLHFGENAWTDW--GP----LQDFNSVKVMSTVLDHETP--------VAN-----ASLYWD----QAISPTR-VRG 115 (374)
Q Consensus 60 ~QlTDlHl~~~~~~~~--g~----~~d~~t~~~l~~vL~~e~P--------i~~-----~~~~~~----~~~~~l~-~~~ 115 (374)
+.++|.|+-......+ +. ..|..-.+....++...+| +.| ..+.|. ++.+.+. ..+
T Consensus 1 llvADPqllg~~~~~~~~~~~~~~~~D~yl~r~~~~a~~~l~PD~Vi~lGDL~D~G~~~~~~e~~e~l~Rf~~If~~~~~ 80 (195)
T cd08166 1 LLVADPQILGYQNENFGLGWIARWDSDRYLKKTYHLALNFVQPDIVIFLGDLMDEGSIANDDEYYSYVQRFINIFEVPNG 80 (195)
T ss_pred CcccCccccCCCCCCccccHHHHHHHHHHHHHHHHHHHhccCCCEEEEeccccCCCCCCCHHHHHHHHHHHHHHhcCCCC
Confidence 3578999965432110 00 1244455556667777788 111 122233 3333222 347
Q ss_pred CCEEEecCCCCCC
Q 017278 116 IPWASIFGNHDDA 128 (374)
Q Consensus 116 iP~~~v~GNHD~~ 128 (374)
+|++++|||||..
T Consensus 81 ~~~~~VpGNHDIG 93 (195)
T cd08166 81 TKIIYLPGDNDIG 93 (195)
T ss_pred CcEEEECCCCCcC
Confidence 8999999999975
No 53
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=97.10 E-value=0.068 Score=50.17 Aligned_cols=30 Identities=17% Similarity=0.103 Sum_probs=20.7
Q ss_pred CCCceEEEeCcccCCCccc-cCCCeEEEEeC
Q 017278 300 RTSVKAVFVGHNHGLDWCC-PYQNLWLCFAR 329 (374)
Q Consensus 300 ~~~Vkaif~GH~H~nd~~~-~~~GI~l~~~~ 329 (374)
.++|-+|++||.|...... ..+|..+..++
T Consensus 192 ~~giDlvlggH~H~~~~~~~~~~~~~v~~~g 222 (252)
T cd00845 192 VPGIDVILGGHTHHLLEEPEVVNGTLIVQAG 222 (252)
T ss_pred CCCccEEEcCCcCcccCCCcccCCEEEEeCC
Confidence 3789999999999854321 34666666544
No 54
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=97.00 E-value=0.00089 Score=59.70 Aligned_cols=69 Identities=19% Similarity=0.296 Sum_probs=42.1
Q ss_pred EEEecCCCCCCCC----CCCCCC-CChhHHHHHHHHhcccCC--------CCC-----HHHHHHHH-HhhHHHcCCCEEE
Q 017278 60 SLFADLHFGENAW----TDWGPL-QDFNSVKVMSTVLDHETP--------VAN-----ASLYWDQA-ISPTRVRGIPWAS 120 (374)
Q Consensus 60 ~QlTDlHl~~~~~----~~~g~~-~d~~t~~~l~~vL~~e~P--------i~~-----~~~~~~~~-~~~l~~~~iP~~~ 120 (374)
+.+||+|+|.... ...-|. ...++.+.+.+++++.+| +.+ ....+..+ ...+...++|+++
T Consensus 1 l~isDlHlG~~~~~~~~g~~~p~~~~~~~~~~l~~~~~~~~~d~lii~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (172)
T cd07391 1 LVVADLHLGKEEELRRRGILLPRGQTEDTLERLDRLIEEYGPERLIILGDLKHSFGGLSRQEFEEVAFLRLLAKDVDVIL 80 (172)
T ss_pred CEeEeeccchHHHHHhcCCcCCcccHHHHHHHHHHHHHhcCCCEEEEeCcccccccccCHHHHHHHHHHHhccCCCeEEE
Confidence 4789999997431 101122 223677778888887888 111 11222222 3344567899999
Q ss_pred ecCCCCCC
Q 017278 121 IFGNHDDA 128 (374)
Q Consensus 121 v~GNHD~~ 128 (374)
++||||..
T Consensus 81 i~GNHD~~ 88 (172)
T cd07391 81 IRGNHDGG 88 (172)
T ss_pred EcccCccc
Confidence 99999975
No 55
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=96.95 E-value=0.0014 Score=58.74 Aligned_cols=69 Identities=23% Similarity=0.280 Sum_probs=43.3
Q ss_pred EEEecCCCCCCCCCCCCC---------CCChhHHHHHHHHhcccCC--------CCC-----HHHHHHHHHhhHHH----
Q 017278 60 SLFADLHFGENAWTDWGP---------LQDFNSVKVMSTVLDHETP--------VAN-----ASLYWDQAISPTRV---- 113 (374)
Q Consensus 60 ~QlTDlHl~~~~~~~~g~---------~~d~~t~~~l~~vL~~e~P--------i~~-----~~~~~~~~~~~l~~---- 113 (374)
+.++|+|++......... ..|....+.+.+++++.+| +.+ ....|....+.+.+
T Consensus 1 llvaDpql~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~i~~~~pd~vi~lGDl~d~~~~~~~~~~~~~~~~~~~~~~~ 80 (171)
T cd07384 1 LLVADPQILDETSYPPRPKIALRLTRFYTDAYMRRAFKTALQRLKPDVVLFLGDLFDGGRIADSEEWEEYVKRFKKIFFL 80 (171)
T ss_pred CcccCccccCCCCCCCCchhhhHHHHHhHHHHHHHHHHHHHHhcCCCEEEEeccccCCcEeCCHHHHHHHHHHHHHHhcc
Confidence 368999998765322111 2355677788888888888 111 12334444433332
Q ss_pred -----cCCCEEEecCCCCCC
Q 017278 114 -----RGIPWASIFGNHDDA 128 (374)
Q Consensus 114 -----~~iP~~~v~GNHD~~ 128 (374)
.++|+++++||||..
T Consensus 81 ~~~~~~~~~~~~v~GNHD~g 100 (171)
T cd07384 81 PSNGLEDIPVYYVPGNHDIG 100 (171)
T ss_pred cccccCCceEEEECCccccC
Confidence 279999999999975
No 56
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=96.86 E-value=0.083 Score=50.12 Aligned_cols=69 Identities=12% Similarity=0.060 Sum_probs=37.6
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHhcccCC---------CCCHHHH----HHHHHhhHHHcCCCEEEecC
Q 017278 57 FKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHETP---------VANASLY----WDQAISPTRVRGIPWASIFG 123 (374)
Q Consensus 57 fkI~QlTDlHl~~~~~~~~g~~~d~~t~~~l~~vL~~e~P---------i~~~~~~----~~~~~~~l~~~~iP~~~v~G 123 (374)
++|++++|+|-.-.+.. .+..+....+.+-+.+.++.+ ++++..+ ...+++.|...+..+. ++|
T Consensus 1 i~il~~~D~H~~~~~~~--~~~~g~~~l~~~i~~~~~~~~~l~l~~GD~~~gs~~~~~~~g~~~~~~ln~~g~d~~-~~G 77 (257)
T cd07408 1 ITILHTNDIHGRIDEDD--NNGIGYAKLATYKKEMNKLDNDLLVDAGDAIQGLPISDLDKGETIIKIMNAVGYDAV-TPG 77 (257)
T ss_pred CEEEEeccCcccccCCC--CccccHHHHHHHHHHHHhcCCEEEEeCCCcCCCchhhhhcCCcHHHHHHHhcCCcEE-ccc
Confidence 58999999996433221 112223222222222333323 1222221 1357788888888885 679
Q ss_pred CCCCC
Q 017278 124 NHDDA 128 (374)
Q Consensus 124 NHD~~ 128 (374)
|||+.
T Consensus 78 NHefd 82 (257)
T cd07408 78 NHEFD 82 (257)
T ss_pred ccccc
Confidence 99975
No 57
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=96.74 E-value=0.0027 Score=59.42 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=19.6
Q ss_pred HHHHHhhHHHcCCCEEEecCCCCCC
Q 017278 104 WDQAISPTRVRGIPWASIFGNHDDA 128 (374)
Q Consensus 104 ~~~~~~~l~~~~iP~~~v~GNHD~~ 128 (374)
+.++++.|.+.++|+++++||||..
T Consensus 57 ~~~~l~~L~~~~~~v~~v~GNHD~~ 81 (231)
T TIGR01854 57 VAQAIRQVSDQGVPCYFMHGNRDFL 81 (231)
T ss_pred HHHHHHHHHHCCCeEEEEcCCCchh
Confidence 3455666667789999999999964
No 58
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=96.55 E-value=0.005 Score=57.94 Aligned_cols=63 Identities=19% Similarity=0.199 Sum_probs=39.5
Q ss_pred EEEecCCCCCCCCCCCCCCCChhHHHHHHHHhccc-----CC--------CCCH----------------HHHHHHHHhh
Q 017278 60 SLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHE-----TP--------VANA----------------SLYWDQAISP 110 (374)
Q Consensus 60 ~QlTDlHl~~~~~~~~g~~~d~~t~~~l~~vL~~e-----~P--------i~~~----------------~~~~~~~~~~ 110 (374)
++|||+|++... .+....+.+.+.|+.. +| +.+. .+.+..+.+.
T Consensus 2 ~~iSDlHl~~~~-------~~~~~~~~l~~~l~~~~~~~~~~d~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (243)
T cd07386 2 VFISDVHVGSKT-------FLEDAFEKFVRWLNGEDDSASRVKYLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAAEY 74 (243)
T ss_pred EEecccCCCchh-------hhHHHHHHHHHHHcCCcccccCccEEEEeCCcccccccCCcchhhhhhhhHHHHHHHHHHH
Confidence 689999997643 1233445666666543 33 1111 1235566666
Q ss_pred HHHc--CCCEEEecCCCCCCC
Q 017278 111 TRVR--GIPWASIFGNHDDAP 129 (374)
Q Consensus 111 l~~~--~iP~~~v~GNHD~~~ 129 (374)
|.++ ++|+++++||||...
T Consensus 75 l~~L~~~~~v~~ipGNHD~~~ 95 (243)
T cd07386 75 LSDVPSHIKIIIIPGNHDAVR 95 (243)
T ss_pred HHhcccCCeEEEeCCCCCccc
Confidence 6665 599999999999753
No 59
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=96.21 E-value=0.0059 Score=57.31 Aligned_cols=71 Identities=23% Similarity=0.262 Sum_probs=47.2
Q ss_pred eEEEEEecCCCCCCCCC-CCC---C-CCChhHHHHHHHHhcccCC---C------CC----H---HHHHHHHHhhHHHcC
Q 017278 57 FKISLFADLHFGENAWT-DWG---P-LQDFNSVKVMSTVLDHETP---V------AN----A---SLYWDQAISPTRVRG 115 (374)
Q Consensus 57 fkI~QlTDlHl~~~~~~-~~g---~-~~d~~t~~~l~~vL~~e~P---i------~~----~---~~~~~~~~~~l~~~~ 115 (374)
-+.+.+||+|++....- ..| | .+-..+.+.+.++++.++| + ++ . ......+.+.+..+
T Consensus 20 ~~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~~~p~~lIilGD~KH~~~~~~~~e~~~~~~f~~~~~~~- 98 (235)
T COG1407 20 GRTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIERYGPKRLIILGDLKHEFGKSLRQEKEEVREFLELLDER- 98 (235)
T ss_pred CcEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHhcCCCEEEEcCccccccCccccccHHHHHHHHHHhccC-
Confidence 36899999999875421 112 2 2445677788888999999 1 11 1 22345566666665
Q ss_pred CCEEEecCCCCCCC
Q 017278 116 IPWASIFGNHDDAP 129 (374)
Q Consensus 116 iP~~~v~GNHD~~~ 129 (374)
-|.++.||||...
T Consensus 99 -evi~i~GNHD~~i 111 (235)
T COG1407 99 -EVIIIRGNHDNGI 111 (235)
T ss_pred -cEEEEeccCCCcc
Confidence 4999999999763
No 60
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=96.20 E-value=0.014 Score=49.63 Aligned_cols=24 Identities=17% Similarity=0.130 Sum_probs=18.1
Q ss_pred HHHHHHHhCCCceEEEeCcccCCCc
Q 017278 292 GIMKILVKRTSVKAVFVGHNHGLDW 316 (374)
Q Consensus 292 ~l~~~L~~~~~Vkaif~GH~H~nd~ 316 (374)
.+.+.+.+. +++.++|||.|.+..
T Consensus 82 ~l~~~l~~~-~~~~vl~GH~H~~~~ 105 (129)
T cd07403 82 AFLDFIDRF-RPKLFIHGHTHLNYG 105 (129)
T ss_pred HHHHHHHHH-CCcEEEEcCcCCCcC
Confidence 466666654 699999999998543
No 61
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=96.15 E-value=0.0073 Score=58.56 Aligned_cols=65 Identities=18% Similarity=0.130 Sum_probs=41.4
Q ss_pred CCeEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHhcccCC---------CCC-HHHHHHHHHhhHHHcC--CCEEEec
Q 017278 55 GPFKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHETP---------VAN-ASLYWDQAISPTRVRG--IPWASIF 122 (374)
Q Consensus 55 g~fkI~QlTDlHl~~~~~~~~g~~~d~~t~~~l~~vL~~e~P---------i~~-~~~~~~~~~~~l~~~~--iP~~~v~ 122 (374)
.++||+|+||+|+.... ..-.+.+.++.+ +.| +.. ....+..+...|..+. .+++++.
T Consensus 43 ~~~~iv~lSDlH~~~~~---------~~~~~~~~~i~~-~~~DlivltGD~~~~~~~~~~~~~~~~L~~L~~~~gv~av~ 112 (284)
T COG1408 43 QGLKIVQLSDLHSLPFR---------EEKLALLIAIAN-ELPDLIVLTGDYVDGDRPPGVAALALFLAKLKAPLGVFAVL 112 (284)
T ss_pred CCeEEEEeehhhhchhh---------HHHHHHHHHHHh-cCCCEEEEEeeeecCCCCCCHHHHHHHHHhhhccCCEEEEe
Confidence 35899999999997541 233344444433 666 121 2445566666666554 5699999
Q ss_pred CCCCCCC
Q 017278 123 GNHDDAP 129 (374)
Q Consensus 123 GNHD~~~ 129 (374)
||||...
T Consensus 113 GNHd~~~ 119 (284)
T COG1408 113 GNHDYGV 119 (284)
T ss_pred ccccccc
Confidence 9999865
No 62
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=96.10 E-value=1.3 Score=42.04 Aligned_cols=31 Identities=16% Similarity=0.191 Sum_probs=20.3
Q ss_pred HhCCCceEEEeCcccCCCcccc---CCCeEEEEeC
Q 017278 298 VKRTSVKAVFVGHNHGLDWCCP---YQNLWLCFAR 329 (374)
Q Consensus 298 ~~~~~Vkaif~GH~H~nd~~~~---~~GI~l~~~~ 329 (374)
.+.++|.+|++||.|... ... .++..+..++
T Consensus 203 ~~~~~iDlilgGH~H~~~-~~~~~~~~~t~v~~~g 236 (264)
T cd07411 203 ERVPGIDVILSGHTHERT-PKPIIAGGGTLVVEAG 236 (264)
T ss_pred hcCCCCcEEEeCcccccc-cCcccccCCEEEEEcC
Confidence 345899999999999732 222 3566555543
No 63
>PRK04036 DNA polymerase II small subunit; Validated
Probab=96.10 E-value=0.015 Score=60.84 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=20.9
Q ss_pred ceEEEeCcccCCCccccCCCeEEEEeCC
Q 017278 303 VKAVFVGHNHGLDWCCPYQNLWLCFARH 330 (374)
Q Consensus 303 Vkaif~GH~H~nd~~~~~~GI~l~~~~~ 330 (374)
...+|+||.|... ...++|+.++..++
T Consensus 441 Pdv~~~GH~H~~~-~~~~~g~~~IN~gs 467 (504)
T PRK04036 441 PDIFHTGHVHING-YGKYRGVLLINSGT 467 (504)
T ss_pred CCEEEeCCCCccc-eEEECCEEEEECCc
Confidence 3789999999954 46788988877664
No 64
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=96.07 E-value=0.4 Score=55.22 Aligned_cols=75 Identities=19% Similarity=0.129 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhhhC-CCCCCCeEEEEccCccccccccccCCCCCCccCcccccchhhhhhhhHHHHHHHhCCCceEEEeC
Q 017278 231 AQAEWFRHKAEEIN-PDSRVPEIVFWHIPSKAYKKVAPRFGVHKPCVGSINKESVAAQEAEMGIMKILVKRTSVKAVFVG 309 (374)
Q Consensus 231 ~Ql~WL~~~l~~~~-~~~~~p~LvF~HhP~~~~~~~~~~~g~~~~~~g~~n~e~v~~~~~n~~l~~~L~~~~~Vkaif~G 309 (374)
+.++.+++..++++ +.+.--+++..|.....-.. .+ + ....++..+.++|.+|+.|
T Consensus 821 d~~e~~~~~v~~Lr~~~~~D~VV~LsH~G~~~d~~-----------~~----~--------~~~~~lA~~v~gIDvIigG 877 (1163)
T PRK09419 821 DPAEAAKKWVKELKEKEKVDAIIALTHLGSNQDRT-----------TG----E--------ITGLELAKKVKGVDAIISA 877 (1163)
T ss_pred CHHHHHHHHHHHHHhhcCCCEEEEEecCCcccccc-----------cc----c--------cHHHHHHHhCCCCCEEEeC
Confidence 44566666666665 22233477778876542100 01 1 1234455567899999999
Q ss_pred cccCCCccccCCCeEEEEeC
Q 017278 310 HNHGLDWCCPYQNLWLCFAR 329 (374)
Q Consensus 310 H~H~nd~~~~~~GI~l~~~~ 329 (374)
|.|. ......+|+.++-+.
T Consensus 878 HsH~-~~~~~v~~~~ivqag 896 (1163)
T PRK09419 878 HTHT-LVDKVVNGTPVVQAY 896 (1163)
T ss_pred CCCc-cccccCCCEEEEeCC
Confidence 9998 444555777665543
No 65
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=96.01 E-value=0.62 Score=45.09 Aligned_cols=29 Identities=28% Similarity=0.345 Sum_probs=20.1
Q ss_pred CCceEEEeCcccCCCccc--cCCCeEEEEeC
Q 017278 301 TSVKAVFVGHNHGLDWCC--PYQNLWLCFAR 329 (374)
Q Consensus 301 ~~Vkaif~GH~H~nd~~~--~~~GI~l~~~~ 329 (374)
++|-+|++||.|..-.+. ..+|+.++-++
T Consensus 228 ~~iD~IlgGHsH~~~~~~~~~~~~~~v~q~g 258 (288)
T cd07412 228 PDVDVVFAGHTHQAYNCTVPAGNPRLVTQAG 258 (288)
T ss_pred CCCCEEEeCccCccccccccCcCCEEEEecC
Confidence 789999999999843321 34666666554
No 66
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=95.34 E-value=0.57 Score=42.43 Aligned_cols=72 Identities=17% Similarity=0.187 Sum_probs=43.3
Q ss_pred HHHHHHHH-HHhhhCCCCCCCeEEEEccCccccccccccCCCCCCccCcccccchhhhhhhhHHHHHHHhCCCceEEEeC
Q 017278 231 AQAEWFRH-KAEEINPDSRVPEIVFWHIPSKAYKKVAPRFGVHKPCVGSINKESVAAQEAEMGIMKILVKRTSVKAVFVG 309 (374)
Q Consensus 231 ~Ql~WL~~-~l~~~~~~~~~p~LvF~HhP~~~~~~~~~~~g~~~~~~g~~n~e~v~~~~~n~~l~~~L~~~~~Vkaif~G 309 (374)
.++.-|+. ..+++++. .-..||++|.||..-. +. . ..+.+.|. .+.|..++.|
T Consensus 141 RE~~RLrlsa~a~l~k~-~~~fivM~HYPP~s~~-------------~t--~---------~~~sevle-e~rv~~~lyG 194 (230)
T COG1768 141 REIGRLRLSADAALPKG-VSKFIVMTHYPPFSDD-------------GT--P---------GPFSEVLE-EGRVSKCLYG 194 (230)
T ss_pred HHHHHHHHHHHHhcccC-cCeEEEEEecCCCCCC-------------CC--C---------cchHHHHh-hcceeeEEee
Confidence 34555555 33445543 3458999999997420 11 0 24666765 5799999999
Q ss_pred cccCCC----ccccCCCeEEEEe
Q 017278 310 HNHGLD----WCCPYQNLWLCFA 328 (374)
Q Consensus 310 H~H~nd----~~~~~~GI~l~~~ 328 (374)
|.|.-. --+..+||.+.-.
T Consensus 195 HlHgv~~p~~~~s~v~Gi~y~Lv 217 (230)
T COG1768 195 HLHGVPRPNIGFSNVRGIEYMLV 217 (230)
T ss_pred eccCCCCCCCCcccccCceEEEE
Confidence 999732 1124456655443
No 67
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=95.31 E-value=1.1 Score=43.24 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=17.9
Q ss_pred HHHHhhHHHcCCCEEEecCCCCCC
Q 017278 105 DQAISPTRVRGIPWASIFGNHDDA 128 (374)
Q Consensus 105 ~~~~~~l~~~~iP~~~v~GNHD~~ 128 (374)
...++.|+..+..+. ++||||+.
T Consensus 72 ~~~~~~ln~~g~D~~-~lGNHefd 94 (281)
T cd07409 72 NADAEFMNLLGYDAM-TLGNHEFD 94 (281)
T ss_pred hHHHHHHHhcCCCEE-Eecccccc
Confidence 456788888888865 56999986
No 68
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=95.18 E-value=1.1 Score=49.39 Aligned_cols=32 Identities=22% Similarity=0.349 Sum_probs=25.6
Q ss_pred HHhCCCceEEEeCcccCCCccccCCCeEEEEeC
Q 017278 297 LVKRTSVKAVFVGHNHGLDWCCPYQNLWLCFAR 329 (374)
Q Consensus 297 L~~~~~Vkaif~GH~H~nd~~~~~~GI~l~~~~ 329 (374)
|.+.++|.+|+.||.|. .+....+|+.++.++
T Consensus 272 l~~v~gID~IlgGHsH~-~~~~~ingv~vvqaG 303 (780)
T PRK09418 272 LTEVPGVDAVLMGHSHT-EVKDVFNGVPVVMPG 303 (780)
T ss_pred HhcCCCCCEEEECCCCC-cccccCCCEEEEEcC
Confidence 46678999999999998 566667888777754
No 69
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=95.16 E-value=0.027 Score=49.94 Aligned_cols=21 Identities=24% Similarity=0.113 Sum_probs=17.8
Q ss_pred HhhHHHcCCCEEEecCCCCCC
Q 017278 108 ISPTRVRGIPWASIFGNHDDA 128 (374)
Q Consensus 108 ~~~l~~~~iP~~~v~GNHD~~ 128 (374)
.+.+.+.+.|+.+++||||..
T Consensus 62 ~~~l~~~~~~~~~v~GNHD~~ 82 (168)
T cd07390 62 LELLSRLNGRKHLIKGNHDSS 82 (168)
T ss_pred HHHHHhCCCCeEEEeCCCCch
Confidence 666777788999999999975
No 70
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=94.52 E-value=0.026 Score=58.32 Aligned_cols=36 Identities=17% Similarity=0.274 Sum_probs=26.6
Q ss_pred CCCeEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHhc
Q 017278 54 GGPFKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLD 92 (374)
Q Consensus 54 ~g~fkI~QlTDlHl~~~~~~~~g~~~d~~t~~~l~~vL~ 92 (374)
..++||+.-||.|+|..+-+ +....++...++.||.
T Consensus 11 entirILVaTD~HlGY~EkD---~vrg~DSf~tFeEIl~ 46 (646)
T KOG2310|consen 11 ENTIRILVATDNHLGYGEKD---AVRGDDSFVTFEEILE 46 (646)
T ss_pred ccceEEEEeecCccccccCC---cccccchHHHHHHHHH
Confidence 36899999999999987632 4445566777777765
No 71
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=94.47 E-value=0.089 Score=42.60 Aligned_cols=20 Identities=35% Similarity=0.446 Sum_probs=17.7
Q ss_pred HhhHHHcCCCEEEecCCCCC
Q 017278 108 ISPTRVRGIPWASIFGNHDD 127 (374)
Q Consensus 108 ~~~l~~~~iP~~~v~GNHD~ 127 (374)
...+....+|++.++||||.
T Consensus 51 ~~~~~~~~~~~~~~~GNHDi 70 (131)
T cd00838 51 LALLLLLGIPVYVVPGNHDI 70 (131)
T ss_pred HHHhhcCCCCEEEeCCCceE
Confidence 57778899999999999993
No 72
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=94.37 E-value=2.9 Score=46.39 Aligned_cols=62 Identities=23% Similarity=0.262 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhhhCCCCCCCeEEEEccCccccccccccCCCCCCccCcccccchhhhhhhhHHHHHHHhCCCceEEEeC
Q 017278 230 SAQAEWFRHKAEEINPDSRVPEIVFWHIPSKAYKKVAPRFGVHKPCVGSINKESVAAQEAEMGIMKILVKRTSVKAVFVG 309 (374)
Q Consensus 230 ~~Ql~WL~~~l~~~~~~~~~p~LvF~HhP~~~~~~~~~~~g~~~~~~g~~n~e~v~~~~~n~~l~~~L~~~~~Vkaif~G 309 (374)
.+-++..++...++++.+.--+++..|.-+..-. . ..+ +| |.+ + .|.+.++|.+|+.|
T Consensus 292 ~D~veaa~~~v~~Lr~~GaDvIIaLsH~G~~~d~--~--------~~~---~E-------n~~-~-~LA~v~GIDaIvgG 349 (814)
T PRK11907 292 RDAVEAVRDIIPTMRAAGADIVLVLSHSGIGDDQ--Y--------EVG---EE-------NVG-Y-QIASLSGVDAVVTG 349 (814)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEEeCCCccccc--c--------ccc---cc-------chh-h-HHhcCCCCCEEEEC
Confidence 3445666677666664323347777787653210 0 001 12 222 2 23467899999999
Q ss_pred cccC
Q 017278 310 HNHG 313 (374)
Q Consensus 310 H~H~ 313 (374)
|.|.
T Consensus 350 HsH~ 353 (814)
T PRK11907 350 HSHA 353 (814)
T ss_pred CCCC
Confidence 9998
No 73
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=93.93 E-value=4.2 Score=44.03 Aligned_cols=61 Identities=18% Similarity=0.119 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhhhCCCCCCCeEEEEccCccccccccccCCCCCCccCcccccchhhhhhhhHHHHHHHhCCCceEEEeCc
Q 017278 231 AQAEWFRHKAEEINPDSRVPEIVFWHIPSKAYKKVAPRFGVHKPCVGSINKESVAAQEAEMGIMKILVKRTSVKAVFVGH 310 (374)
Q Consensus 231 ~Ql~WL~~~l~~~~~~~~~p~LvF~HhP~~~~~~~~~~~g~~~~~~g~~n~e~v~~~~~n~~l~~~L~~~~~Vkaif~GH 310 (374)
+-++-.++...++++.+.--+++..|.-+..-.. . .+ +| |.. ..|.+.++|-+|+.||
T Consensus 202 D~ve~a~~~v~~Lk~~gaDvII~LsH~G~~~d~~--~--------~~---ae-------n~~--~~l~~v~gID~Il~GH 259 (649)
T PRK09420 202 DITETARKYVPEMKEKGADIVVAIPHSGISADPY--K--------AM---AE-------NSV--YYLSEVPGIDAIMFGH 259 (649)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEEecCCcCCCCc--c--------cc---cc-------chh--HHHhcCCCCCEEEeCC
Confidence 4455566666666543233477788876642100 0 00 11 111 1346778999999999
Q ss_pred ccC
Q 017278 311 NHG 313 (374)
Q Consensus 311 ~H~ 313 (374)
.|.
T Consensus 260 sH~ 262 (649)
T PRK09420 260 SHA 262 (649)
T ss_pred CCc
Confidence 998
No 74
>PHA02239 putative protein phosphatase
Probab=93.69 E-value=0.15 Score=48.03 Aligned_cols=28 Identities=18% Similarity=0.194 Sum_probs=18.7
Q ss_pred HHHHHHHHHhhHHHcCCCEEEecCCCCCC
Q 017278 100 ASLYWDQAISPTRVRGIPWASIFGNHDDA 128 (374)
Q Consensus 100 ~~~~~~~~~~~l~~~~iP~~~v~GNHD~~ 128 (374)
+.+.+..+.+.+ ..+.++++++||||..
T Consensus 46 s~~v~~~l~~~~-~~~~~~~~l~GNHE~~ 73 (235)
T PHA02239 46 SKDVVNYIFDLM-SNDDNVVTLLGNHDDE 73 (235)
T ss_pred hHHHHHHHHHHh-hcCCCeEEEECCcHHH
Confidence 444555555533 3356899999999964
No 75
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=93.53 E-value=2.1 Score=49.50 Aligned_cols=22 Identities=32% Similarity=0.694 Sum_probs=17.1
Q ss_pred HHHHHHhCCCceEEEeCcccCC
Q 017278 293 IMKILVKRTSVKAVFVGHNHGL 314 (374)
Q Consensus 293 l~~~L~~~~~Vkaif~GH~H~n 314 (374)
..++..+.++|-+|+.||.|..
T Consensus 259 ~~~la~~~~gID~Il~GHsH~~ 280 (1163)
T PRK09419 259 VYDLAEKTKGIDAIVAGHQHGL 280 (1163)
T ss_pred HHHHHHhCCCCcEEEeCCCccc
Confidence 3444446789999999999983
No 76
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=93.13 E-value=6.3 Score=42.50 Aligned_cols=18 Identities=39% Similarity=0.676 Sum_probs=15.7
Q ss_pred HHHhCCCceEEEeCcccC
Q 017278 296 ILVKRTSVKAVFVGHNHG 313 (374)
Q Consensus 296 ~L~~~~~Vkaif~GH~H~ 313 (374)
.|.+.++|-+|+.||.|.
T Consensus 222 ~l~~v~gID~Il~GHsH~ 239 (626)
T TIGR01390 222 YLTKVPGIDAVLFGHSHA 239 (626)
T ss_pred HHhcCCCCCEEEcCCCCc
Confidence 356778999999999998
No 77
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=92.44 E-value=0.33 Score=42.93 Aligned_cols=68 Identities=18% Similarity=0.220 Sum_probs=36.7
Q ss_pred EEEEEecCCCCCCCCCCCCCCCChh--HHHHHHHHhcccCC------CC------CHHHHHHHHHhhHHHcCCCEEEecC
Q 017278 58 KISLFADLHFGENAWTDWGPLQDFN--SVKVMSTVLDHETP------VA------NASLYWDQAISPTRVRGIPWASIFG 123 (374)
Q Consensus 58 kI~QlTDlHl~~~~~~~~g~~~d~~--t~~~l~~vL~~e~P------i~------~~~~~~~~~~~~l~~~~iP~~~v~G 123 (374)
.|-.+||+||+....-..-|..+.+ ....|....+.-+| +. |-...+..+++. ++--...|+|
T Consensus 5 mmyfisDtHfgh~nvi~~~pfsn~~ehd~vil~N~nntv~p~D~lwhLGDl~~~~n~~~~a~~Iler---LnGrkhlv~G 81 (186)
T COG4186 5 MMYFISDTHFGHKNVISMRPFSNPDEHDEVILSNWNNTVGPDDVLWHLGDLSSGANRERAAGLILER---LNGRKHLVPG 81 (186)
T ss_pred EEEEecccccCCcceeecCCCCCHHHHhHHHHHhHHhcCCccceEEEecccccccchhhHHHHHHHH---cCCcEEEeeC
Confidence 4788999999986533222333221 11222223333455 21 233344444444 4445599999
Q ss_pred CCCCC
Q 017278 124 NHDDA 128 (374)
Q Consensus 124 NHD~~ 128 (374)
|||-.
T Consensus 82 NhDk~ 86 (186)
T COG4186 82 NHDKC 86 (186)
T ss_pred CCCCC
Confidence 99954
No 78
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=92.19 E-value=6.5 Score=41.60 Aligned_cols=68 Identities=16% Similarity=0.112 Sum_probs=37.4
Q ss_pred CCeEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHhcc-------cCC----C------CCHHH-HH---HHHHhhHHH
Q 017278 55 GPFKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDH-------ETP----V------ANASL-YW---DQAISPTRV 113 (374)
Q Consensus 55 g~fkI~QlTDlHl~~~~~~~~g~~~d~~t~~~l~~vL~~-------e~P----i------~~~~~-~~---~~~~~~l~~ 113 (374)
-+++|++++|+|=.-.+.. .+.. -...+..++++ +.| + +++.. .+ ...++.|..
T Consensus 33 ~~ltil~tnD~Hg~~~~~~-~~~~----G~a~~a~~i~~~r~~~~~~~~~~l~ldaGD~~~Gs~~s~~~~g~~~i~~mN~ 107 (551)
T PRK09558 33 YKITILHTNDHHGHFWRNE-YGEY----GLAAQKTLVDQIRKEVAAEGGSVLLLSGGDINTGVPESDLQDAEPDFRGMNL 107 (551)
T ss_pred eEEEEEEecccCCCccccc-cCCc----cHHHHHHHHHHHHHHhhccCCCEEEEcCCccccceEhhhhcCCchhHHHHhc
Confidence 4699999999997543221 1111 23333333332 134 1 22211 11 245677888
Q ss_pred cCCCEEEecCCCCCC
Q 017278 114 RGIPWASIFGNHDDA 128 (374)
Q Consensus 114 ~~iP~~~v~GNHD~~ 128 (374)
.+.-+.. +||||+.
T Consensus 108 ~g~Da~t-lGNHEFD 121 (551)
T PRK09558 108 IGYDAMA-VGNHEFD 121 (551)
T ss_pred CCCCEEc-ccccccC
Confidence 8887665 5999976
No 79
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=91.34 E-value=14 Score=35.53 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=16.6
Q ss_pred HHHhhHHHcCCCEEEecCCCCCC
Q 017278 106 QAISPTRVRGIPWASIFGNHDDA 128 (374)
Q Consensus 106 ~~~~~l~~~~iP~~~v~GNHD~~ 128 (374)
-.++.|...+.-.. ++||||+.
T Consensus 66 ~~~~~~n~~g~Da~-~~GNHEfD 87 (285)
T cd07405 66 PDFRGMNLVGYDAM-AVGNHEFD 87 (285)
T ss_pred hHHHHHHhhCCcEE-eecccccc
Confidence 35677888888766 55999976
No 80
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=90.95 E-value=9 Score=40.61 Aligned_cols=17 Identities=18% Similarity=0.294 Sum_probs=14.3
Q ss_pred HHhCCCceEEEeCcccC
Q 017278 297 LVKRTSVKAVFVGHNHG 313 (374)
Q Consensus 297 L~~~~~Vkaif~GH~H~ 313 (374)
..+.++|-+|++||.|.
T Consensus 201 a~~~~~iD~IigGHsH~ 217 (550)
T TIGR01530 201 AQKINDIDVIVSGDSHY 217 (550)
T ss_pred HhcCCCCCEEEeCCCCc
Confidence 34557899999999998
No 81
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=88.46 E-value=0.61 Score=39.51 Aligned_cols=14 Identities=36% Similarity=0.558 Sum_probs=12.2
Q ss_pred cCCCEEEecCCCCC
Q 017278 114 RGIPWASIFGNHDD 127 (374)
Q Consensus 114 ~~iP~~~v~GNHD~ 127 (374)
.+.|++++.||||.
T Consensus 44 ~~~~~~~V~GN~D~ 57 (129)
T cd07403 44 LNVPVYYVHGNHDV 57 (129)
T ss_pred cCCCEEEEeCCCcc
Confidence 47799999999994
No 82
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=87.82 E-value=1.1 Score=36.07 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=17.9
Q ss_pred HHHHHHhCCCceEEEeCcccCCCc
Q 017278 293 IMKILVKRTSVKAVFVGHNHGLDW 316 (374)
Q Consensus 293 l~~~L~~~~~Vkaif~GH~H~nd~ 316 (374)
.+..+....++..+|+||.|.+..
T Consensus 94 ~~~~~~~~~~~~~~~~GH~H~~~~ 117 (131)
T cd00838 94 ALLELLEKYGVDLVLSGHTHVYER 117 (131)
T ss_pred HHHHHHHHhCCCEEEeCCeecccc
Confidence 444444557999999999998654
No 83
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=87.36 E-value=29 Score=33.53 Aligned_cols=23 Identities=17% Similarity=0.065 Sum_probs=16.3
Q ss_pred HHHHhhHHHcCCCEEEecCCCCCC
Q 017278 105 DQAISPTRVRGIPWASIFGNHDDA 128 (374)
Q Consensus 105 ~~~~~~l~~~~iP~~~v~GNHD~~ 128 (374)
..+++.|...+.- ++++||||+.
T Consensus 75 ~~~~~~mN~mgyD-a~tlGNHEFd 97 (282)
T cd07407 75 SYSNPIFRMMPYD-LLTIGNHELY 97 (282)
T ss_pred hHHHHHHHhcCCc-EEeecccccC
Confidence 3466677766554 4789999985
No 84
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=87.10 E-value=2.1 Score=44.25 Aligned_cols=28 Identities=18% Similarity=0.089 Sum_probs=22.2
Q ss_pred HHHHHHHhhHHHc--CCCEEEecCCCCCCC
Q 017278 102 LYWDQAISPTRVR--GIPWASIFGNHDDAP 129 (374)
Q Consensus 102 ~~~~~~~~~l~~~--~iP~~~v~GNHD~~~ 129 (374)
+.|+++.+.|.+- .|-+.++|||||...
T Consensus 293 ~qy~~~A~~L~~vp~~I~v~i~PGnhDa~r 322 (481)
T COG1311 293 EQYEELAEFLDQVPEHIKVFIMPGNHDAVR 322 (481)
T ss_pred HHHHHHHHHHhhCCCCceEEEecCCCCccc
Confidence 3577888888764 578899999999754
No 85
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=86.13 E-value=0.86 Score=40.93 Aligned_cols=58 Identities=19% Similarity=0.227 Sum_probs=37.8
Q ss_pred HHHHHHHhCCCceEEEeCcccCCCccccCCCeEEEEeCCccCCCCCCCCCeeEEEEEEcC
Q 017278 292 GIMKILVKRTSVKAVFVGHNHGLDWCCPYQNLWLCFARHTGYGGYGNWPRGARILEIMEQ 351 (374)
Q Consensus 292 ~l~~~L~~~~~Vkaif~GH~H~nd~~~~~~GI~l~~~~~tgy~~yg~~~rG~R~iel~~~ 351 (374)
..++++.+..+...++.||.|.... ....|+.++- |++.=+.-+..+..|-+++....
T Consensus 99 ~~l~~la~~~~~Dvli~GHTH~p~~-~~~~~i~~vN-PGS~s~pr~~~~~sy~il~~~~~ 156 (172)
T COG0622 99 SLLEYLAKELGADVLIFGHTHKPVA-EKVGGILLVN-PGSVSGPRGGNPASYAILDVDNL 156 (172)
T ss_pred HHHHHHHHhcCCCEEEECCCCcccE-EEECCEEEEc-CCCcCCCCCCCCcEEEEEEcCCC
Confidence 3666777777899999999999654 4446665554 54443333334457777777643
No 86
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=84.77 E-value=1.7 Score=41.93 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=17.3
Q ss_pred HHHhhHHHcCCCEEEecCCCCCC
Q 017278 106 QAISPTRVRGIPWASIFGNHDDA 128 (374)
Q Consensus 106 ~~~~~l~~~~iP~~~v~GNHD~~ 128 (374)
++++.+.+++.++.+|.||||..
T Consensus 47 ~vl~~l~~l~~~~~~VlGNHD~~ 69 (275)
T PRK00166 47 EVLRFVKSLGDSAVTVLGNHDLH 69 (275)
T ss_pred HHHHHHHhcCCCeEEEecChhHH
Confidence 45555556677899999999974
No 87
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=84.58 E-value=2.3 Score=43.23 Aligned_cols=74 Identities=19% Similarity=0.025 Sum_probs=41.8
Q ss_pred CCeEEEEEecCCCCCCCCC-CCCC-----CCChhHHHHHHHHhcccCC--------C-C-C---HHHHHH----HHHhhH
Q 017278 55 GPFKISLFADLHFGENAWT-DWGP-----LQDFNSVKVMSTVLDHETP--------V-A-N---ASLYWD----QAISPT 111 (374)
Q Consensus 55 g~fkI~QlTDlHl~~~~~~-~~g~-----~~d~~t~~~l~~vL~~e~P--------i-~-~---~~~~~~----~~~~~l 111 (374)
..+||+.|+|.|+...... ..+. ..|..-.+.+..+..--+| + + + ..+.|. ++.+.+
T Consensus 47 n~~ki~~vaDPQilg~~~~~~~~~~Ldk~~~D~~lrr~f~~~~~~lkPdvvffLGDLfDeG~~~~~eEf~~~~~RfkkIf 126 (410)
T KOG3662|consen 47 NSTKILLVADPQILGNWPKKFLVSWLDKYGNDWYLRRSFDMSQWRLKPDVVFFLGDLFDEGQWAGDEEFKKRYERFKKIF 126 (410)
T ss_pred CceEEEEecCchhcCCCCCccccchHHhhhhHHHHHHHHHHHHhccCCCEEEEeccccccCccCChHHHHHHHHHHHHhh
Confidence 5699999999999763210 0011 1233333334434444678 1 1 1 233444 433333
Q ss_pred H-HcCCCEEEecCCCCCC
Q 017278 112 R-VRGIPWASIFGNHDDA 128 (374)
Q Consensus 112 ~-~~~iP~~~v~GNHD~~ 128 (374)
. +..+|...+|||||..
T Consensus 127 ~~k~~~~~~~i~GNhDIG 144 (410)
T KOG3662|consen 127 GRKGNIKVIYIAGNHDIG 144 (410)
T ss_pred CCCCCCeeEEeCCccccc
Confidence 3 2589999999999975
No 88
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=84.50 E-value=2.3 Score=39.00 Aligned_cols=14 Identities=43% Similarity=0.612 Sum_probs=12.7
Q ss_pred CCCEEEecCCCCCC
Q 017278 115 GIPWASIFGNHDDA 128 (374)
Q Consensus 115 ~iP~~~v~GNHD~~ 128 (374)
++|+.+|+||||..
T Consensus 98 ~i~~i~V~GNHDIG 111 (193)
T cd08164 98 KTPLINIAGNHDVG 111 (193)
T ss_pred CceEEEECCcccCC
Confidence 59999999999975
No 89
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=83.70 E-value=4.2 Score=38.92 Aligned_cols=27 Identities=15% Similarity=0.027 Sum_probs=19.8
Q ss_pred HHHHHHhhHHHc--CCCEEEecCCCCCCC
Q 017278 103 YWDQAISPTRVR--GIPWASIFGNHDDAP 129 (374)
Q Consensus 103 ~~~~~~~~l~~~--~iP~~~v~GNHD~~~ 129 (374)
.|+++-..|.+. .+|+.++|||||-..
T Consensus 80 ~~~~ld~~l~~l~~~i~V~imPG~~Dp~~ 108 (257)
T cd07387 80 AVKELDNFLSQLASSVPVDLMPGEFDPAN 108 (257)
T ss_pred HHHHHHHHHHhhhcCCeEEECCCCCCccc
Confidence 355555555543 799999999999765
No 90
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=81.94 E-value=34 Score=31.82 Aligned_cols=36 Identities=17% Similarity=0.256 Sum_probs=25.9
Q ss_pred HHHHHHHhCCCceEEEeCcccCCCccccCCCeEEEEe
Q 017278 292 GIMKILVKRTSVKAVFVGHNHGLDWCCPYQNLWLCFA 328 (374)
Q Consensus 292 ~l~~~L~~~~~Vkaif~GH~H~nd~~~~~~GI~l~~~ 328 (374)
.+...|.+ .+|.+|+.||-|.-.-+..++|..+.|+
T Consensus 196 ~~A~~l~~-~G~DvIiG~H~H~~~~~e~~~~~~I~Ys 231 (239)
T smart00854 196 ELAHALID-AGADVVIGHHPHVLQPIEIYKGKLIAYS 231 (239)
T ss_pred HHHHHHHH-cCCCEEEcCCCCcCCceEEECCEEEEEc
Confidence 35555554 5899999999998555456678777664
No 91
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=80.42 E-value=43 Score=31.04 Aligned_cols=35 Identities=17% Similarity=0.276 Sum_probs=25.3
Q ss_pred HHHHHHhCCCceEEEeCcccCCCccccCCCeEEEEe
Q 017278 293 IMKILVKRTSVKAVFVGHNHGLDWCCPYQNLWLCFA 328 (374)
Q Consensus 293 l~~~L~~~~~Vkaif~GH~H~nd~~~~~~GI~l~~~ 328 (374)
+...+.. .++.+|+.||-|.-.-+..++|..+.|+
T Consensus 199 la~~l~~-~G~D~IiG~H~Hv~q~~E~~~~~~I~YS 233 (239)
T cd07381 199 LARALID-AGADLVIGHHPHVLQGIEIYKGKLIFYS 233 (239)
T ss_pred HHHHHHH-CCCCEEEcCCCCcCCCeEEECCEEEEEc
Confidence 4445544 5899999999998554455777777775
No 92
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=78.38 E-value=3.4 Score=37.74 Aligned_cols=21 Identities=14% Similarity=0.178 Sum_probs=14.2
Q ss_pred HHHhhHHHcCCCEEEecCCCCCC
Q 017278 106 QAISPTRVRGIPWASIFGNHDDA 128 (374)
Q Consensus 106 ~~~~~l~~~~iP~~~v~GNHD~~ 128 (374)
++++.+.. .++.++.||||..
T Consensus 47 ~~~~~l~~--~~~~~v~GNhe~~ 67 (207)
T cd07424 47 ACLELLLE--PWFHAVRGNHEQM 67 (207)
T ss_pred HHHHHHhc--CCEEEeECCChHH
Confidence 34444443 3688999999975
No 93
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=76.18 E-value=14 Score=37.95 Aligned_cols=112 Identities=11% Similarity=0.133 Sum_probs=53.0
Q ss_pred ceEEEEEEeCCCCC----C------------C--CCCCHHHHHHHHHHHhhhCCCCCCCeEEEEccCccccccccccCCC
Q 017278 210 AVAYMYFLDSGGGS----Y------------P--EVISSAQAEWFRHKAEEINPDSRVPEIVFWHIPSKAYKKVAPRFGV 271 (374)
Q Consensus 210 ~~~~L~~LDS~~g~----~------------~--g~I~~~Ql~WL~~~l~~~~~~~~~p~LvF~HhP~~~~~~~~~~~g~ 271 (374)
....|+|||++... . . .-|.++|.+||++.|++.. ..-.++..=.|+..........
T Consensus 262 ~~~~~~~LD~R~~R~~~~~~~~~~~~~~~~~~~~~mLG~~Q~~wL~~~L~~s~---a~~kvi~s~v~~~~~~~~~~~~-- 336 (453)
T PF09423_consen 262 DLVEFFMLDTRSYRSPPPCDGPGDTCPAADDPSRTMLGEEQWDWLEDWLASSQ---ATWKVIGSSVPFSPLNFPDAAE-- 336 (453)
T ss_dssp TTEEEEE--SSSS----CCCSSEE--HHHH-TT--SS-HHHHHHHHHHHHH-----SSEEEEE-SS--S---SS-SS---
T ss_pred CceeEEEEechhccccccccccccccccccCCccCcCCHHHHHHHHHHHhcCC---CcEEEEEeCCceeccccccccc--
Confidence 34889999999732 1 1 3599999999999998754 2334555544443321110000
Q ss_pred CCCccCcccccc-hhhhhhhhHHHHHHHhCCCc--eEEEeCcccCCCcccc-------------CCCeEEEEeCCcc
Q 017278 272 HKPCVGSINKES-VAAQEAEMGIMKILVKRTSV--KAVFVGHNHGLDWCCP-------------YQNLWLCFARHTG 332 (374)
Q Consensus 272 ~~~~~g~~n~e~-v~~~~~n~~l~~~L~~~~~V--kaif~GH~H~nd~~~~-------------~~GI~l~~~~~tg 332 (374)
... .+.|. -+-+..-..+++.|.+. ++ ..+++|-+|.. +... ..++.++.++-|.
T Consensus 337 ---~~~-~~~d~W~g~~~er~~Ll~~l~~~-~~~~vV~LSGDvH~~-~~~~~~~~~~~~~~~~~~~~~Ef~~s~vts 407 (453)
T PF09423_consen 337 ---GLP-FNMDSWDGYPAERQRLLDFLRES-GIRNVVFLSGDVHAS-AASRIPPDDADPPDGPGSVGVEFTSSSVTS 407 (453)
T ss_dssp ---S---EETTSGGGSHHHHHHHHHHHHHT-T---EEEEE-SSSSE-EEEEEESSTT---TTS-EEEEEEE---SST
T ss_pred ---ccc-cCCCchhhCHHHHHHHHHHHHhh-CCCCEEEEecCcchh-eeeecccccccccCCCCCeEEEEECCCccC
Confidence 000 01111 12223346899999754 44 37999999974 3222 1246788877554
No 94
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=75.33 E-value=6.4 Score=36.59 Aligned_cols=53 Identities=19% Similarity=0.252 Sum_probs=29.7
Q ss_pred HHHHHHhCCCceEEEeCcccCCCccc-cCCCeEEEEeCCccCCCCCCCCCeeEEEEEEcC
Q 017278 293 IMKILVKRTSVKAVFVGHNHGLDWCC-PYQNLWLCFARHTGYGGYGNWPRGARILEIMEQ 351 (374)
Q Consensus 293 l~~~L~~~~~Vkaif~GH~H~nd~~~-~~~GI~l~~~~~tgy~~yg~~~rG~R~iel~~~ 351 (374)
.++.+.+..++..++|||.|++...- ...|+ ..-|-..|+|....-.++++++
T Consensus 176 ~~~~~~~~~~~~~~i~GHtH~~~~~~~~~~~~------~~~~~~lgdW~~~~~~~~~~~~ 229 (231)
T TIGR01854 176 EVAAVMRRYGVDRLIHGHTHRPAIHPLQADGQ------PATRIVLGDWYRQGSILRVDAD 229 (231)
T ss_pred HHHHHHHHcCCCEEEECCccCcceeecccCCC------ccEEEEECCCccCCeEEEEcCC
Confidence 34443344589999999999964321 11121 1124455677655556666654
No 95
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.32 E-value=20 Score=31.58 Aligned_cols=75 Identities=16% Similarity=0.345 Sum_probs=48.0
Q ss_pred hHHHHHHHhCCCceEEEeCcccCCCccccCCCeEEEEeCCccCCCCC--C---CCCeeEEEEEEcCCCceEEEE-EccCC
Q 017278 291 MGIMKILVKRTSVKAVFVGHNHGLDWCCPYQNLWLCFARHTGYGGYG--N---WPRGARILEIMEQPFSLKSWI-RMEDG 364 (374)
Q Consensus 291 ~~l~~~L~~~~~Vkaif~GH~H~nd~~~~~~GI~l~~~~~tgy~~yg--~---~~rG~R~iel~~~~~~i~Tw~-R~~~g 364 (374)
...+++|.+.-+|..++.||.|.-+. ....| .+...|+++-|+|. + ..|..-+..+ ++...-|++ |+-||
T Consensus 96 ~~sL~~LaRqldvDILl~G~Th~f~A-ye~eg-~ffvnPGSaTGAfn~~~t~~~~PSFvLmDi--qg~~~v~YvY~lidg 171 (183)
T KOG3325|consen 96 PESLALLARQLDVDILLTGHTHKFEA-YEHEG-KFFVNPGSATGAFNVSDTDIIVPSFVLMDI--QGSTVVTYVYRLIDG 171 (183)
T ss_pred HHHHHHHHHhcCCcEEEeCCceeEEE-EEeCC-cEEeCCCcccCCCcccccCCCCCceEEEEe--cCCEEEEEEeeeeCC
Confidence 35677888778999999999997321 23333 34445555555554 2 3455544444 346788886 99999
Q ss_pred cEEee
Q 017278 365 SVHSE 369 (374)
Q Consensus 365 ~~~~~ 369 (374)
++.-+
T Consensus 172 eVkVd 176 (183)
T KOG3325|consen 172 EVKVD 176 (183)
T ss_pred cEEEE
Confidence 87543
No 96
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=73.86 E-value=3.9 Score=38.12 Aligned_cols=16 Identities=19% Similarity=0.115 Sum_probs=12.8
Q ss_pred CCCceEEEeCcccCCC
Q 017278 300 RTSVKAVFVGHNHGLD 315 (374)
Q Consensus 300 ~~~Vkaif~GH~H~nd 315 (374)
..+.+.++|||.|...
T Consensus 179 ~~~~~~vv~GHt~~~~ 194 (234)
T cd07423 179 YRGDALVVYGHTPVPE 194 (234)
T ss_pred CCCCeEEEECCCCCcc
Confidence 3567899999999853
No 97
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=71.80 E-value=1.1e+02 Score=31.96 Aligned_cols=81 Identities=16% Similarity=0.137 Sum_probs=47.5
Q ss_pred CCCCHHHHHHHHHHHhhhCCCCCCCeEEEEccCccccccccccCCCCCCccCcccccchhhhhhhhHHHHHHHhCCCceE
Q 017278 226 EVISSAQAEWFRHKAEEINPDSRVPEIVFWHIPSKAYKKVAPRFGVHKPCVGSINKESVAAQEAEMGIMKILVKRTSVKA 305 (374)
Q Consensus 226 g~I~~~Ql~WL~~~l~~~~~~~~~p~LvF~HhP~~~~~~~~~~~g~~~~~~g~~n~e~v~~~~~n~~l~~~L~~~~~Vka 305 (374)
++.-.+.++++++.+.++++.+---+++..|.+...-...... .+ +..+... +.+.+
T Consensus 182 ~~~f~d~~e~~~~~i~elk~~~vD~iI~LsH~G~~~d~~~~~~----------~~-----------~~~~~~~--~~iD~ 238 (517)
T COG0737 182 GVTFRDPIEAAKKYIPELKGEGVDVIIALSHLGIEDDLELASE----------VP-----------GDVDVAV--PGIDL 238 (517)
T ss_pred CcEEcCHHHHHHHHHHHHHhcCCCEEEEEeccCcCcccccccc----------cc-----------ccccccc--cCcce
Confidence 4555678899999999887532234788888887643221110 00 0111111 45999
Q ss_pred EEeCcccCC----CccccCCCeEEEEeC
Q 017278 306 VFVGHNHGL----DWCCPYQNLWLCFAR 329 (374)
Q Consensus 306 if~GH~H~n----d~~~~~~GI~l~~~~ 329 (374)
++.||.|+. +.-+..+|+.++-+.
T Consensus 239 i~~GH~H~~~~~~~~~~~~~~t~ivqag 266 (517)
T COG0737 239 IIGGHSHTVFPGGDKPGTVNGTPIVQAG 266 (517)
T ss_pred EeccCCcccccCCcccCccCCEEEEccC
Confidence 999999952 212234566666654
No 98
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=70.89 E-value=5.7 Score=36.19 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=16.9
Q ss_pred HHHHHHhCCCceEEEeCcccCCCc
Q 017278 293 IMKILVKRTSVKAVFVGHNHGLDW 316 (374)
Q Consensus 293 l~~~L~~~~~Vkaif~GH~H~nd~ 316 (374)
.........+.+.|++||.-....
T Consensus 171 ~~~~~~~~~~~~~ii~GHt~~~~~ 194 (225)
T cd00144 171 AVEWFLKKNGLKLIVRGHTPVEEG 194 (225)
T ss_pred HHHHHHHHCCCeEEEEcCccccCc
Confidence 334444557899999999887544
No 99
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=70.20 E-value=12 Score=33.47 Aligned_cols=60 Identities=13% Similarity=0.150 Sum_probs=33.6
Q ss_pred CeEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHhcccCC---C--CCHHHHHHHHHhhHHH-cCCCEEEecCCCCCCC
Q 017278 56 PFKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHETP---V--ANASLYWDQAISPTRV-RGIPWASIFGNHDDAP 129 (374)
Q Consensus 56 ~fkI~QlTDlHl~~~~~~~~g~~~d~~t~~~l~~vL~~e~P---i--~~~~~~~~~~~~~l~~-~~iP~~~v~GNHD~~~ 129 (374)
.+||+.+||+|.... . .....+....+++ + -|... ......+.. ...++++|.||-|.+.
T Consensus 1 ~m~ilviSDtH~~~~-----------~-~~~~~~~~~~~~~d~vih~GD~~~--~~~~~~l~~~~~~~i~~V~GN~D~~~ 66 (172)
T COG0622 1 MMKILVISDTHGPLR-----------A-IEKALKIFNLEKVDAVIHAGDSTS--PFTLDALEGGLAAKLIAVRGNCDGEV 66 (172)
T ss_pred CcEEEEEeccCCChh-----------h-hhHHHHHhhhcCCCEEEECCCcCC--ccchHHhhcccccceEEEEccCCCcc
Confidence 369999999997431 1 1222233333455 2 23111 112223333 5789999999999763
No 100
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=68.58 E-value=9 Score=36.62 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=17.4
Q ss_pred HHHhhHHHcCCCEEEecCCCCCC
Q 017278 106 QAISPTRVRGIPWASIFGNHDDA 128 (374)
Q Consensus 106 ~~~~~l~~~~iP~~~v~GNHD~~ 128 (374)
++++.+.+++..+.+|.||||..
T Consensus 45 evl~~l~~l~~~v~~VlGNHD~~ 67 (257)
T cd07422 45 ETLRFVKSLGDSAKTVLGNHDLH 67 (257)
T ss_pred HHHHHHHhcCCCeEEEcCCchHH
Confidence 35556666666888999999974
No 101
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=68.16 E-value=8.5 Score=35.51 Aligned_cols=13 Identities=15% Similarity=0.243 Sum_probs=10.6
Q ss_pred CceEEEeCcccCC
Q 017278 302 SVKAVFVGHNHGL 314 (374)
Q Consensus 302 ~Vkaif~GH~H~n 314 (374)
+...|+|||.|..
T Consensus 179 ~~~~vv~GHT~~~ 191 (218)
T PRK11439 179 GADHFWFGHTPLR 191 (218)
T ss_pred CCCEEEECCccCC
Confidence 4567999999984
No 102
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=67.44 E-value=10 Score=35.03 Aligned_cols=32 Identities=9% Similarity=0.057 Sum_probs=18.6
Q ss_pred CCceEEEeCcccCCCccccCCCeEEEEeCCccCC
Q 017278 301 TSVKAVFVGHNHGLDWCCPYQNLWLCFARHTGYG 334 (374)
Q Consensus 301 ~~Vkaif~GH~H~nd~~~~~~GI~l~~~~~tgy~ 334 (374)
.+...|+|||.|.... ....+. ++.-+++.|+
T Consensus 178 ~~~~~vv~GHTh~~~~-~~~~~~-i~IDtGs~~g 209 (218)
T PRK09968 178 NGADYFIFGHMMFDNI-QTFANQ-IYIDTGSPKS 209 (218)
T ss_pred CCCCEEEECCCCcCcc-eeECCE-EEEECCCCCC
Confidence 4567899999998432 333443 3333434443
No 103
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=65.27 E-value=8.4 Score=35.38 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=14.2
Q ss_pred HhCCCceEEEeCcccCCC
Q 017278 298 VKRTSVKAVFVGHNHGLD 315 (374)
Q Consensus 298 ~~~~~Vkaif~GH~H~nd 315 (374)
.+..+.+.+++||.|...
T Consensus 163 l~~~~~~~iv~GHTh~~~ 180 (208)
T cd07425 163 LERLGAKRMVVGHTPQEG 180 (208)
T ss_pred HHHcCCCeEEEcCeeeec
Confidence 344578999999999854
No 104
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=55.16 E-value=29 Score=32.65 Aligned_cols=27 Identities=11% Similarity=-0.048 Sum_probs=18.0
Q ss_pred HHHHHHHHHhhHHHcCCCEEEecCCCCCC
Q 017278 100 ASLYWDQAISPTRVRGIPWASIFGNHDDA 128 (374)
Q Consensus 100 ~~~~~~~~~~~l~~~~iP~~~v~GNHD~~ 128 (374)
+.+.++.+.+.+. .-.+.++.||||..
T Consensus 53 S~~vl~~~~~~~~--~~~~~~l~GNHE~~ 79 (245)
T PRK13625 53 SLRMIEIVWELVE--KKAAYYVPGNHCNK 79 (245)
T ss_pred hHHHHHHHHHHhh--CCCEEEEeCccHHH
Confidence 5555666555532 34789999999853
No 105
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=51.65 E-value=18 Score=32.71 Aligned_cols=61 Identities=11% Similarity=0.131 Sum_probs=32.3
Q ss_pred EEEEecCCCCCCCCCCCCCCCChhHHHHHHHHhc----ccCC---------CC--C-H-------------HHHHHHHHh
Q 017278 59 ISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLD----HETP---------VA--N-A-------------SLYWDQAIS 109 (374)
Q Consensus 59 I~QlTDlHl~~~~~~~~g~~~d~~t~~~l~~vL~----~e~P---------i~--~-~-------------~~~~~~~~~ 109 (374)
|+.+||+|++.+. .+.+.++++|+ +++| +. . . .....++.+
T Consensus 1 Iv~~Sg~~~~~~~----------~~~~~L~~~l~~~~~~~~p~~lIl~G~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (209)
T PF04042_consen 1 IVFASGPFLDSDN----------LSLEPLRDLLSGVEDASKPDVLILMGPFIDSPHPYISSGSVPDSYSFEEDFLKELDS 70 (209)
T ss_dssp EEEEES--CTTT-----------HHHHHHHHHHHCCCHCTTECEEEEES-SCBTTSHHHHHT---HHCCHHHHHHHHCHH
T ss_pred CEEEecCccCCCH----------hHHHHHHHHHHhccccCCCcEEEEeCCCcCccccccccccccccccccHHHHHHHHH
Confidence 7889999997542 34666777665 3445 11 0 0 111223333
Q ss_pred hHHH--cCCCEEEecCCCCCCC
Q 017278 110 PTRV--RGIPWASIFGNHDDAP 129 (374)
Q Consensus 110 ~l~~--~~iP~~~v~GNHD~~~ 129 (374)
.+.+ ..+++.++||+||...
T Consensus 71 ~~~~i~~~~~vvlvPg~~D~~~ 92 (209)
T PF04042_consen 71 FLESILPSTQVVLVPGPNDPTS 92 (209)
T ss_dssp HHCCCHCCSEEEEE--TTCTT-
T ss_pred HHhhcccccEEEEeCCCccccc
Confidence 3333 4699999999999754
No 106
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=48.25 E-value=31 Score=33.89 Aligned_cols=35 Identities=6% Similarity=0.073 Sum_probs=21.2
Q ss_pred CCCHHHHHHHHHHHhhhCC---------CCCCCeEEEEccCccc
Q 017278 227 VISSAQAEWFRHKAEEINP---------DSRVPEIVFWHIPSKA 261 (374)
Q Consensus 227 ~I~~~Ql~WL~~~l~~~~~---------~~~~p~LvF~HhP~~~ 261 (374)
.+.++.++||++..-.... +.....++|+|-=+-+
T Consensus 171 avP~~H~~fl~~l~~~~~~~~~~~~~~~g~~~~~lifVHAGlrP 214 (304)
T cd07421 171 AVPEEHKKFLRNLVWVHEEDDVCIETEEGLKHCKLIAVHAGLEK 214 (304)
T ss_pred hCCHHHHHHHHhCCceEEeCcccccccccccccceEEEEcccCC
Confidence 5788889998865432211 1113467999977643
No 107
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=47.65 E-value=45 Score=32.68 Aligned_cols=17 Identities=12% Similarity=0.216 Sum_probs=14.4
Q ss_pred HHhCCCceEEEeCcccC
Q 017278 297 LVKRTSVKAVFVGHNHG 313 (374)
Q Consensus 297 L~~~~~Vkaif~GH~H~ 313 (374)
..+.++|-+|+.||.|.
T Consensus 227 A~~v~gIDvIigGHsH~ 243 (313)
T cd08162 227 AALLSGVDVIIAGGSNT 243 (313)
T ss_pred HhcCCCCCEEEeCCCCc
Confidence 33558999999999998
No 108
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=47.44 E-value=68 Score=31.33 Aligned_cols=67 Identities=13% Similarity=0.111 Sum_probs=43.4
Q ss_pred eecCCCCeEEEEEecCCCCCCCCCCCCCCCChhHHHHHHHHhccc--------CC---C----------C---CH----H
Q 017278 50 MRAAGGPFKISLFADLHFGENAWTDWGPLQDFNSVKVMSTVLDHE--------TP---V----------A---NA----S 101 (374)
Q Consensus 50 f~~~~g~fkI~QlTDlHl~~~~~~~~g~~~d~~t~~~l~~vL~~e--------~P---i----------~---~~----~ 101 (374)
.++.++..+|+.+||+||.. ..+.+.|+++++.- .| | . +. .
T Consensus 21 ~~~~~~~~~~VilSDV~LD~-----------p~tl~~L~kvf~~y~~~~~~~~~P~~fVL~GnF~S~p~~~~~~~~~~yk 89 (291)
T PTZ00235 21 VRKNDKRHNWIIMHDVYLDS-----------PYTFEVLDKMLSLYVNTYPENELPVGFIFMGDFISLKFDYNRNFHKVYI 89 (291)
T ss_pred EecCCCceEEEEEEeeccCC-----------HHHHHHHHHHHHHhhccCcccCCCeEEEEecCccCCcccCCCCchHHHH
Confidence 34436778999999999943 46888888877732 26 1 0 11 2
Q ss_pred HHHHHHHh-hHH-----HcCCCEEEecCCCCC
Q 017278 102 LYWDQAIS-PTR-----VRGIPWASIFGNHDD 127 (374)
Q Consensus 102 ~~~~~~~~-~l~-----~~~iP~~~v~GNHD~ 127 (374)
+.++++.. .+. ....-|..|||-.|-
T Consensus 90 ~~Fd~La~llls~fp~L~~~s~fVFVPGpnDP 121 (291)
T PTZ00235 90 KGFEKLSVMLISKFKLILEHCYLIFIPGINDP 121 (291)
T ss_pred HHHHHHHHHHHHhChHHHhcCeEEEECCCCCC
Confidence 34455554 232 335889999999995
No 109
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=46.05 E-value=32 Score=33.39 Aligned_cols=21 Identities=24% Similarity=0.290 Sum_probs=14.2
Q ss_pred HhhHHHcCCCEEEecCCCCCC
Q 017278 108 ISPTRVRGIPWASIFGNHDDA 128 (374)
Q Consensus 108 ~~~l~~~~iP~~~v~GNHD~~ 128 (374)
++.+.+.+..+.+|.||||..
T Consensus 49 L~~l~~l~~~~~~VlGNHD~~ 69 (279)
T TIGR00668 49 LRYVKSLGDAVRLVLGNHDLH 69 (279)
T ss_pred HHHHHhcCCCeEEEEChhHHH
Confidence 334445555567999999964
No 110
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=35.20 E-value=24 Score=33.82 Aligned_cols=23 Identities=26% Similarity=0.164 Sum_probs=16.7
Q ss_pred HHHhhHHHcCCCEEEecCCCCCC
Q 017278 106 QAISPTRVRGIPWASIFGNHDDA 128 (374)
Q Consensus 106 ~~~~~l~~~~iP~~~v~GNHD~~ 128 (374)
++.+-+...++|+++|.||||..
T Consensus 64 ~~~~g~~~~p~~t~fi~GNHE~~ 86 (262)
T cd00844 64 KYYSGEKKAPILTIFIGGNHEAS 86 (262)
T ss_pred HHhcCCccCCeeEEEECCCCCCH
Confidence 33333555788889999999964
No 111
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=30.94 E-value=54 Score=30.20 Aligned_cols=11 Identities=27% Similarity=0.268 Sum_probs=9.6
Q ss_pred eEEEEEecCCC
Q 017278 57 FKISLFADLHF 67 (374)
Q Consensus 57 fkI~QlTDlHl 67 (374)
=||..|||+|=
T Consensus 15 ~ri~visDiHg 25 (218)
T PRK09968 15 RHIWVVGDIHG 25 (218)
T ss_pred CeEEEEEeccC
Confidence 48999999993
No 112
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=30.76 E-value=4.4e+02 Score=24.46 Aligned_cols=76 Identities=14% Similarity=0.170 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhhhCCCCCCCeEEEEccCccccccccccCCCCCCccCcccccchhhhhhhhHHHHHHHhCCCceEEEeC
Q 017278 230 SAQAEWFRHKAEEINPDSRVPEIVFWHIPSKAYKKVAPRFGVHKPCVGSINKESVAAQEAEMGIMKILVKRTSVKAVFVG 309 (374)
Q Consensus 230 ~~Ql~WL~~~l~~~~~~~~~p~LvF~HhP~~~~~~~~~~~g~~~~~~g~~n~e~v~~~~~n~~l~~~L~~~~~Vkaif~G 309 (374)
..+++.+.+..+++++. .--++|++|-=. |+.. .+ ..+ ...+...|.+ .++.+|+.+
T Consensus 167 ~~~~~~i~~~i~~~r~~-~D~vIv~~HwG~-e~~~-----------~p--~~~-------q~~~a~~lid-aGaDiIiG~ 223 (250)
T PF09587_consen 167 RPGIERIKEDIREARKK-ADVVIVSLHWGI-EYEN-----------YP--TPE-------QRELARALID-AGADIIIGH 223 (250)
T ss_pred cchHHHHHHHHHHHhcC-CCEEEEEeccCC-CCCC-----------CC--CHH-------HHHHHHHHHH-cCCCEEEeC
Confidence 34568888888887743 235788888632 2111 00 011 1346667776 479999999
Q ss_pred cccCCCccccCCCeEEEEe
Q 017278 310 HNHGLDWCCPYQNLWLCFA 328 (374)
Q Consensus 310 H~H~nd~~~~~~GI~l~~~ 328 (374)
|-|.-.-...|+|-.+.|+
T Consensus 224 HpHv~q~~E~y~~~~I~YS 242 (250)
T PF09587_consen 224 HPHVIQPVEIYKGKPIFYS 242 (250)
T ss_pred CCCcccceEEECCEEEEEe
Confidence 9998544445677777765
No 113
>COG5555 Cytolysin, a secreted calcineurin-like phosphatase [Cell motility and secretion]
Probab=30.07 E-value=41 Score=32.84 Aligned_cols=80 Identities=16% Similarity=0.230 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhhhCCCCCCCeEEEEccCcccccc-ccccC--CCCCCccCcccccchhhhhhhhHHHHHHHhCCCceEE
Q 017278 230 SAQAEWFRHKAEEINPDSRVPEIVFWHIPSKAYKK-VAPRF--GVHKPCVGSINKESVAAQEAEMGIMKILVKRTSVKAV 306 (374)
Q Consensus 230 ~~Ql~WL~~~l~~~~~~~~~p~LvF~HhP~~~~~~-~~~~~--g~~~~~~g~~n~e~v~~~~~n~~l~~~L~~~~~Vkai 306 (374)
..-+-|++..|...... .+|+++|.|.--..+.+ .|..- -+|+. |+ -+.......+...++..+.. .||..+
T Consensus 252 ~sslpwlk~dl~~~aad-grpv~LfqhyGwdtfsteawdpAsrT~Dd~--Gs-gaphww~a~er~all~~lqG-YNvvg~ 326 (392)
T COG5555 252 NSSLPWLKVDLIYSAAD-GRPVYLFQHYGWDTFSTEAWDPASRTLDDT--GS-GAPHWWPAPERGALLFFLQG-YNVVGT 326 (392)
T ss_pred cccCcceeccceeeccC-CCceeehhhhCccceeccccCchhcccccC--CC-CCCCCCCCCCcchHHHhhcC-ceeEEe
Confidence 34568999988875543 58999999996654432 34211 11111 11 01111111122456666654 799999
Q ss_pred EeCcccCC
Q 017278 307 FVGHNHGL 314 (374)
Q Consensus 307 f~GH~H~n 314 (374)
|.||-|.-
T Consensus 327 fhGhkhd~ 334 (392)
T COG5555 327 FHGHKHDF 334 (392)
T ss_pred cccccccc
Confidence 99999964
No 114
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=29.35 E-value=26 Score=30.76 Aligned_cols=41 Identities=24% Similarity=0.331 Sum_probs=25.3
Q ss_pred eEEEEEEeCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCCCeEEEEc
Q 017278 211 VAYMYFLDSGGGSYPEVISSAQAEWFRHKAEEINPDSRVPEIVFWH 256 (374)
Q Consensus 211 ~~~L~~LDS~~g~~~g~I~~~Ql~WL~~~l~~~~~~~~~p~LvF~H 256 (374)
...+|++||...+....++++-++-++++- -..+|+++|..
T Consensus 87 d~lIyVIDS~D~krfeE~~~el~ELleeeK-----l~~vpvlIfan 127 (185)
T KOG0074|consen 87 DGLIYVIDSTDEKRFEEISEELVELLEEEK-----LAEVPVLIFAN 127 (185)
T ss_pred ceEEEEEeCCchHhHHHHHHHHHHHhhhhh-----hhccceeehhh
Confidence 566999999874433445555555544431 12578888875
No 115
>PRK15367 type III secretion system protein SsaD; Provisional
Probab=23.95 E-value=2.1e+02 Score=29.16 Aligned_cols=85 Identities=15% Similarity=0.243 Sum_probs=56.9
Q ss_pred CCCCHHHHHHHHHHHhhhCCCCCCCeEEEEccCccccccccccCCCCCCccCcccccchhhhhhhhHHHHHHHhCCCceE
Q 017278 226 EVISSAQAEWFRHKAEEINPDSRVPEIVFWHIPSKAYKKVAPRFGVHKPCVGSINKESVAAQEAEMGIMKILVKRTSVKA 305 (374)
Q Consensus 226 g~I~~~Ql~WL~~~l~~~~~~~~~p~LvF~HhP~~~~~~~~~~~g~~~~~~g~~n~e~v~~~~~n~~l~~~L~~~~~Vka 305 (374)
|.++++|.+-|.+.++++++......|+|.-+|+-. . ..+.+ |.+.+
T Consensus 295 G~L~~~q~~~~~~l~~~~~~~~p~L~l~~qni~~~~-------------------~-----------~~~~l---pa~i~ 341 (395)
T PRK15367 295 GVLDESHQRILQETLAALKKKDPALSLIYQDIAPSH-------------------D-----------ESKYL---PAPVA 341 (395)
T ss_pred EecCHHHHHHHHHHHHHHHhhCCCceEEEcCCCCCc-------------------c-----------hhhcC---ccceE
Confidence 789999999999999988753223566666555531 0 11122 55666
Q ss_pred EEeCcccCCCccccCCCeEEEEeCCccCCCCCCCCCeeEEEEEEcCC
Q 017278 306 VFVGHNHGLDWCCPYQNLWLCFARHTGYGGYGNWPRGARILEIMEQP 352 (374)
Q Consensus 306 if~GH~H~nd~~~~~~GI~l~~~~~tgy~~yg~~~rG~R~iel~~~~ 352 (374)
-+.|-.|. .|...-+|.++-.|. -.+.||||+-+++++
T Consensus 342 g~gGn~~~-pyV~L~Ng~RL~~Gs--------~L~nGyrV~~I~~~g 379 (395)
T PRK15367 342 GFVQSRHG-NYLLLTNKERLRVGA--------LLPNGGEIVHLSADV 379 (395)
T ss_pred EeecCCCC-CeEEeeCCcCccCCC--------CCCCceEEEEEcCCc
Confidence 77777775 666666777765543 356799999999764
No 116
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=22.68 E-value=2.5e+02 Score=26.92 Aligned_cols=30 Identities=10% Similarity=-0.071 Sum_probs=19.2
Q ss_pred HHHHHHHHHhhHHHcCCCEEEecCCCCCCC
Q 017278 100 ASLYWDQAISPTRVRGIPWASIFGNHDDAP 129 (374)
Q Consensus 100 ~~~~~~~~~~~l~~~~iP~~~v~GNHD~~~ 129 (374)
+.+.+..+........-.++.+.||||...
T Consensus 71 s~e~l~~l~~lk~~~p~~v~llrGNHE~~~ 100 (271)
T smart00156 71 SIEVILLLFALKILYPNRVVLLRGNHESRS 100 (271)
T ss_pred hHHHHHHHHHHHhcCCCCEEEEeccccHHH
Confidence 444455444443444557889999999853
No 117
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=21.97 E-value=58 Score=28.82 Aligned_cols=20 Identities=5% Similarity=-0.069 Sum_probs=14.3
Q ss_pred HHHHhhHHHcCCCEEEecCC
Q 017278 105 DQAISPTRVRGIPWASIFGN 124 (374)
Q Consensus 105 ~~~~~~l~~~~iP~~~v~GN 124 (374)
+.+...+...+.-..++.|.
T Consensus 35 ~~~~~~i~~~~pd~vi~lGD 54 (171)
T cd07384 35 RAFKTALQRLKPDVVLFLGD 54 (171)
T ss_pred HHHHHHHHhcCCCEEEEecc
Confidence 44555666778888888885
No 118
>PHA02546 47 endonuclease subunit; Provisional
Probab=21.37 E-value=1.4e+02 Score=29.52 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=20.6
Q ss_pred HHHHHHHHhhHHHcCCCEEEecCC
Q 017278 101 SLYWDQAISPTRVRGIPWASIFGN 124 (374)
Q Consensus 101 ~~~~~~~~~~l~~~~iP~~~v~GN 124 (374)
...++++++.+.+.++-..++.|.
T Consensus 25 ~~~l~~ii~~a~~~~vD~VliaGD 48 (340)
T PHA02546 25 LKFIKQAIEYSKAHGITTWIQLGD 48 (340)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCc
Confidence 356788999999999999999995
No 119
>PF10994 DUF2817: Protein of unknown function (DUF2817); InterPro: IPR021259 This family of proteins has no known function.
Probab=20.28 E-value=1.5e+02 Score=29.53 Aligned_cols=53 Identities=17% Similarity=0.157 Sum_probs=33.3
Q ss_pred EEEEEEeCCCCCCCCCC-CHHHHHHHHHHHhhhCCCCCCCeEEEEccCccccccccc
Q 017278 212 AYMYFLDSGGGSYPEVI-SSAQAEWFRHKAEEINPDSRVPEIVFWHIPSKAYKKVAP 267 (374)
Q Consensus 212 ~~L~~LDS~~g~~~g~I-~~~Ql~WL~~~l~~~~~~~~~p~LvF~HhP~~~~~~~~~ 267 (374)
-+++++=|+.....|.. +.-|+.||++.+....+ ..+.++|+| -+-+|+-.|.
T Consensus 51 ~~lLv~~SGtHGVEGf~GSaiQ~~~L~~~~~~~~~--~~~avllVH-AlNPyGfa~~ 104 (341)
T PF10994_consen 51 SRLLVLTSGTHGVEGFAGSAIQIALLREDLARSLP--AGVAVLLVH-ALNPYGFAWL 104 (341)
T ss_pred CeEEEEEecCCcccccccHHHHHHHHHcccccccC--CCCeEEEEE-ccCcccccee
Confidence 44777778764333443 45599999997444322 356889997 4655555543
No 120
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=20.13 E-value=91 Score=28.78 Aligned_cols=27 Identities=19% Similarity=0.175 Sum_probs=17.3
Q ss_pred HHHHHHHHHhhHHHcCCCEEEecCCCCCC
Q 017278 100 ASLYWDQAISPTRVRGIPWASIFGNHDDA 128 (374)
Q Consensus 100 ~~~~~~~~~~~l~~~~iP~~~v~GNHD~~ 128 (374)
+.+.++.+.+... .+ .+.++.||||..
T Consensus 50 S~~vl~~l~~l~~-~~-~~~~l~GNHE~~ 76 (222)
T cd07413 50 IRELLEIVKSMVD-AG-HALAVMGNHEFN 76 (222)
T ss_pred HHHHHHHHHHhhc-CC-CEEEEEccCcHH
Confidence 5555555555332 22 688999999964
Done!