BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017279
(374 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 272
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 103/245 (42%), Gaps = 22/245 (8%)
Query: 43 WKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAP 102
W +P ELLL I S + P ++ SGVC W SL
Sbjct: 9 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDE------------------SLWQ 50
Query: 103 KLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTR 162
L + + + +E + + I + C LQ+L L + +LSD + LA NL R
Sbjct: 51 TLDEFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL-EGLRLSDPIVNTLAKN-SNLVR 108
Query: 163 LNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNL-GWC 221
LN+SGC+ FS+ AL L C +L LNL C + A+ + LNL G+
Sbjct: 109 LNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 168
Query: 222 EDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAI 281
+++ + L CP+L LDL V + +D +L+ L L C +I +
Sbjct: 169 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ-LNYLQHLSLSRCYDIIPETL 227
Query: 282 YSLAQ 286
L +
Sbjct: 228 LELGE 232
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 336
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 108/265 (40%), Gaps = 24/265 (9%)
Query: 43 WKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLS--- 99
W +P ELLL I S + P ++ SGVC W +L N++ V
Sbjct: 9 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLL 68
Query: 100 -----------------LAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKS 142
LA + + + +E + + I + C LQ+L L +
Sbjct: 69 SQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL-EG 127
Query: 143 FKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYA 202
+LSD + LA NL RLN+SGC+ FS+ AL L C +L LNL C +
Sbjct: 128 LRLSDPIVNTLAKNS-NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHV 186
Query: 203 LQAIGRNCNQLQSLNL-GWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANG 261
A+ + LNL G+ +++ + L CP+L LDL V + +D
Sbjct: 187 QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ- 245
Query: 262 CPHLRSLGLYYCRNITDRAIYSLAQ 286
+L+ L L C +I + L +
Sbjct: 246 LNYLQHLSLSRCYDIIPETLLELGE 270
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 89/211 (42%), Gaps = 49/211 (23%)
Query: 122 NAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTS----------- 170
+A+E + C +L+ L L+++ L L L P L L G T+
Sbjct: 201 SALERLVTRCPNLKSLKLNRAVPLE--KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLS 258
Query: 171 --------------FSDHALAYLCGF---CRKLKILNLCGCVKAATDYALQAIGRNCNQL 213
F D AYL C +L LNL Y L + C +L
Sbjct: 259 VALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLS--YATVQSYDLVKLLCQCPKL 316
Query: 214 QSLNLGWCED-VGDVGVMNLAYGCPDLRSLDLCGC--------VCITDDSVIALANGCPH 264
Q L W D + D G+ LA C DLR L + V +T+ +++++ GCP
Sbjct: 317 QRL---WVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPK 373
Query: 265 LRSLGLYYCRNITDRAIYSLAQSGVKNKPGI 295
L S+ LY+CR +T+ A+ ++A +N+P +
Sbjct: 374 LESV-LYFCRQMTNAALITIA----RNRPNM 399
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 103/240 (42%), Gaps = 51/240 (21%)
Query: 76 AICLGLTHLSLSWCKNNMNNLV--LSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHD 133
++C LT L+LS+ +LV L PKL +L L +ED +E +A++C D
Sbjct: 286 SVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVL------DYIEDAGLEVLASTCKD 339
Query: 134 LQDLDL--SKSF------KLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRK 185
L++L + S+ F L+++ L +++ GCP L + + C ++ AL +
Sbjct: 340 LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV-LYFCRQMTNAALITIARNRPN 398
Query: 186 LKILNLCGCVKAATDY--------------------------------ALQAIGRNCNQL 213
+ LC A DY + IG ++
Sbjct: 399 MTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKM 458
Query: 214 QSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYC 273
+ L++ + D D+G+ ++ GC LR L++ C D +++A A+ +RSL + C
Sbjct: 459 EMLSVAFAGD-SDLGMHHVLSGCDSLRKLEIRDCP-FGDKALLANASKLETMRSLWMSSC 516
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 91/218 (41%), Gaps = 16/218 (7%)
Query: 124 VEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFC 183
+EA+++S L+++ L K ++D L +A N L +S C FS LA + C
Sbjct: 97 IEAMSSSYTWLEEIRL-KRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATC 155
Query: 184 RKLKILNLCGC-VKAATDYALQAIGRNCNQLQSLNLG-WCEDVGDVGVMNLAYGCPDLRS 241
R LK L+L V + + L L SLN+ +V + L CP+L+S
Sbjct: 156 RNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKS 215
Query: 242 LDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIY---SLAQSGVKN---KPGI 295
L L V + + + L P L LG +Y S+A SG K G
Sbjct: 216 LKLNRAVPL--EKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGF 273
Query: 296 WESMKGRYDE-----EGLQSLNISQCTALTPPAVQALC 328
W+++ L +LN+S T + V+ LC
Sbjct: 274 WDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLC 311
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 71/159 (44%), Gaps = 14/159 (8%)
Query: 122 NAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAH---GCPNLTRLNISGCTS-FSDHALA 177
+ + AIA +C +L++LDL +S + D S + L+H +L LNIS S S AL
Sbjct: 146 DGLAAIAATCRNLKELDLRES-DVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE 204
Query: 178 YLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLG--WCEDVGDV--GVMNLA 233
L C LK L L +A L + + QL+ L G E DV G+
Sbjct: 205 RLVTRCPNLKSLKLN---RAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL 261
Query: 234 YGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYY 272
GC +LR L G + A+ + C L +L L Y
Sbjct: 262 SGCKELRCLS--GFWDAVPAYLPAVYSVCSRLTTLNLSY 298
>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGL|B Chain B, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|D Chain D, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|F Chain F, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|H Chain H, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|J Chain J, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|L Chain L, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|N Chain N, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|P Chain P, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGM|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
Length = 592
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 99/249 (39%), Gaps = 63/249 (25%)
Query: 81 LTHLSLSWCKNNMNNLVLSLAPKLTKLQTL----------VLRQDKPQLE---------D 121
L L LS+ N ++ A ++ KL L L Q P LE D
Sbjct: 272 LCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGD 331
Query: 122 NAVEAIANSCHDLQDLDLSKSFK----------LSDRSLYALAHGCPNLTRL--NISGCT 169
+E +A C L+ L + + +S R L ALA GC L + +S T
Sbjct: 332 RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDIT 391
Query: 170 SFSDHALA-YLCGFC--------RKLKILNL----------CGCVK-----------AAT 199
+ S ++ YL C R+ +I +L GC K T
Sbjct: 392 NESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLT 451
Query: 200 DYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALA 259
D L IG+ ++ + LG+ + D G+M + GCP+L+ L++ GC C ++ ++ A
Sbjct: 452 DLGLSYIGQYSPNVRWMLLGYVGE-SDEGLMEFSRGCPNLQKLEMRGC-CFSERAIAAAV 509
Query: 260 NGCPHLRSL 268
P LR L
Sbjct: 510 TKLPSLRYL 518
Score = 35.0 bits (79), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 146 SDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQA 205
SD L + GCPNL +L + GC FS+ A+A L+ L + G + T L
Sbjct: 476 SDEGLMEFSRGCPNLQKLEMRGC-CFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQ 534
Query: 206 IGR 208
+ R
Sbjct: 535 MAR 537
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 118 QLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALA---HGCPNLTRLNISGCTSFSDH 174
+LE + ++ S +LQ+L KS K+ + L AL H P L L++ GCT+ ++
Sbjct: 189 RLEWTGIRSLPASIANLQNL---KSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNY 245
Query: 175 ALAYLCGFCRKLKILNLCGC 194
+ G LK L L C
Sbjct: 246 PPIF--GGRAPLKRLILKDC 263
>pdb|2JE0|A Chain A, Crystal Structure Of Pp32
pdb|2JE0|B Chain B, Crystal Structure Of Pp32
pdb|2JE0|C Chain C, Crystal Structure Of Pp32
pdb|2JE0|D Chain D, Crystal Structure Of Pp32
pdb|2JE0|E Chain E, Crystal Structure Of Pp32
pdb|2JE0|F Chain F, Crystal Structure Of Pp32
pdb|2JE1|A Chain A, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|B Chain B, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|C Chain C, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|D Chain D, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
Length = 149
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 150 LYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGC-VKAATDY 201
L LA CPNLT LN+SG D + LK L+L C V DY
Sbjct: 80 LEVLAEKCPNLTHLNLSG-NKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDY 131
>pdb|1FS1|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FS1|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
Length = 53
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 43 WKDIPMELLLRILSLVDEPTVIVASGVCSGW 73
W +P ELLL I S + P ++ SGVC W
Sbjct: 9 WDSLPDELLLGIFSCLCLPELLKVSGVCKRW 39
>pdb|1LDK|E Chain E, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 41
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 43 WKDIPMELLLRILSLVDEPTVIVASGVCSGW 73
W +P ELLL I S + P ++ SGVC W
Sbjct: 1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRW 31
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,119,408
Number of Sequences: 62578
Number of extensions: 374417
Number of successful extensions: 813
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 785
Number of HSP's gapped (non-prelim): 16
length of query: 374
length of database: 14,973,337
effective HSP length: 100
effective length of query: 274
effective length of database: 8,715,537
effective search space: 2388057138
effective search space used: 2388057138
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)