Query 017279
Match_columns 374
No_of_seqs 186 out of 2386
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 07:10:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017279.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017279hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 100.0 1.3E-30 2.9E-35 225.0 7.0 286 44-354 73-388 (483)
2 KOG4341 F-box protein containi 100.0 1.1E-28 2.3E-33 213.3 7.7 332 6-363 73-451 (483)
3 KOG2120 SCF ubiquitin ligase, 99.9 5.5E-28 1.2E-32 200.3 9.4 267 41-334 96-389 (419)
4 KOG2120 SCF ubiquitin ligase, 99.9 6.6E-22 1.4E-26 164.4 8.0 274 5-288 98-386 (419)
5 cd00116 LRR_RI Leucine-rich re 99.6 1.3E-12 2.7E-17 117.7 23.5 250 80-356 24-295 (319)
6 cd00116 LRR_RI Leucine-rich re 99.5 2.5E-12 5.4E-17 115.8 21.5 233 98-357 16-268 (319)
7 KOG1947 Leucine rich repeat pr 99.5 1.8E-13 3.9E-18 130.4 13.5 145 99-245 182-329 (482)
8 KOG1947 Leucine rich repeat pr 99.5 2E-13 4.3E-18 130.0 12.7 256 79-361 188-450 (482)
9 KOG1909 Ran GTPase-activating 99.3 1.5E-10 3.3E-15 99.3 13.9 257 79-358 30-319 (382)
10 PLN00113 leucine-rich repeat r 99.2 1.7E-11 3.6E-16 126.6 8.4 254 70-349 57-319 (968)
11 KOG1909 Ran GTPase-activating 99.2 4.4E-10 9.5E-15 96.5 14.5 233 96-354 21-285 (382)
12 PLN00113 leucine-rich repeat r 99.2 1E-10 2.2E-15 120.9 9.3 177 79-273 118-294 (968)
13 KOG3207 Beta-tubulin folding c 99.1 1.4E-11 3.1E-16 108.4 2.4 222 99-349 115-337 (505)
14 PLN03210 Resistant to P. syrin 99.1 3.5E-10 7.6E-15 117.8 9.5 47 302-356 865-911 (1153)
15 KOG3665 ZYG-1-like serine/thre 98.9 1.4E-08 3E-13 98.9 11.4 60 159-220 123-182 (699)
16 KOG3665 ZYG-1-like serine/thre 98.9 1.1E-08 2.4E-13 99.5 10.6 149 132-288 122-274 (699)
17 KOG3207 Beta-tubulin folding c 98.9 8.6E-10 1.9E-14 97.4 2.5 193 131-349 120-312 (505)
18 KOG4194 Membrane glycoprotein 98.8 1.7E-09 3.7E-14 98.9 0.5 157 182-358 267-435 (873)
19 PF12937 F-box-like: F-box-lik 98.7 6.9E-09 1.5E-13 64.2 2.7 37 43-79 1-37 (47)
20 PLN03210 Resistant to P. syrin 98.7 6.6E-08 1.4E-12 101.0 9.8 43 302-353 798-840 (1153)
21 KOG2982 Uncharacterized conser 98.5 8.7E-08 1.9E-12 81.0 4.3 146 122-274 61-210 (418)
22 COG5238 RNA1 Ran GTPase-activa 98.5 2.3E-06 5E-11 71.7 12.4 36 237-273 185-224 (388)
23 KOG0444 Cytoskeletal regulator 98.5 5.9E-09 1.3E-13 96.4 -4.4 127 209-352 243-376 (1255)
24 KOG4194 Membrane glycoprotein 98.5 4E-08 8.6E-13 90.3 0.8 240 82-348 81-327 (873)
25 KOG0444 Cytoskeletal regulator 98.3 7.7E-08 1.7E-12 89.2 -2.0 105 235-353 243-354 (1255)
26 COG5238 RNA1 Ran GTPase-activa 98.2 7.9E-05 1.7E-09 62.7 15.2 20 339-359 243-262 (388)
27 KOG2982 Uncharacterized conser 98.2 4.9E-07 1.1E-11 76.6 2.0 179 86-273 52-234 (418)
28 PF00646 F-box: F-box domain; 98.2 3.1E-07 6.6E-12 57.1 0.5 37 42-78 2-38 (48)
29 KOG0618 Serine/threonine phosp 98.1 1.6E-06 3.6E-11 83.9 3.9 124 213-351 361-489 (1081)
30 KOG3864 Uncharacterized conser 98.1 6.1E-06 1.3E-10 66.2 4.8 89 186-278 103-191 (221)
31 KOG3864 Uncharacterized conser 98.0 5.2E-06 1.1E-10 66.6 3.9 89 213-321 103-191 (221)
32 smart00256 FBOX A Receptor for 97.9 4E-06 8.7E-11 50.0 1.5 33 46-78 1-33 (41)
33 PF14580 LRR_9: Leucine-rich r 97.9 1.1E-06 2.4E-11 70.6 -1.7 59 209-273 40-98 (175)
34 PF14580 LRR_9: Leucine-rich r 97.9 3.6E-06 7.9E-11 67.6 0.9 131 131-274 18-151 (175)
35 KOG4237 Extracellular matrix p 97.7 1E-05 2.2E-10 71.4 0.0 63 302-372 318-380 (498)
36 KOG1259 Nischarin, modulator o 97.6 2.6E-05 5.7E-10 66.4 2.2 40 303-349 371-410 (490)
37 KOG4658 Apoptotic ATPase [Sign 97.5 0.00023 5.1E-09 71.8 7.1 213 131-353 544-785 (889)
38 PRK15387 E3 ubiquitin-protein 97.3 0.00019 4.2E-09 71.0 3.7 111 80-221 202-312 (788)
39 PRK15387 E3 ubiquitin-protein 97.2 0.0004 8.7E-09 68.8 5.3 35 306-353 382-416 (788)
40 KOG4658 Apoptotic ATPase [Sign 97.2 0.0012 2.7E-08 66.6 8.8 109 103-221 543-652 (889)
41 KOG0618 Serine/threonine phosp 97.1 0.00012 2.5E-09 71.6 -0.2 125 134-274 361-487 (1081)
42 PF12937 F-box-like: F-box-lik 97.0 0.00019 4.1E-09 44.1 0.1 29 6-34 2-30 (47)
43 KOG4237 Extracellular matrix p 96.9 0.00031 6.8E-09 62.3 1.0 71 259-357 270-340 (498)
44 KOG0472 Leucine-rich repeat pr 96.9 0.0012 2.5E-08 59.0 4.3 41 301-350 500-540 (565)
45 KOG1859 Leucine-rich repeat pr 96.9 9.8E-05 2.1E-09 70.4 -2.5 33 210-246 186-218 (1096)
46 smart00367 LRR_CC Leucine-rich 96.9 0.0015 3.3E-08 34.3 3.1 24 262-285 1-24 (26)
47 PRK15370 E3 ubiquitin-protein 96.7 0.0033 7.1E-08 62.6 6.2 11 132-142 220-230 (754)
48 KOG1259 Nischarin, modulator o 96.6 0.0011 2.4E-08 56.8 2.2 127 132-274 284-410 (490)
49 KOG2123 Uncharacterized conser 96.5 0.00077 1.7E-08 57.1 0.4 38 210-248 62-99 (388)
50 smart00367 LRR_CC Leucine-rich 96.5 0.0045 9.7E-08 32.5 3.1 24 236-259 1-24 (26)
51 PF13855 LRR_8: Leucine rich r 96.4 0.00018 3.9E-09 47.1 -3.4 38 304-349 23-60 (61)
52 PF12799 LRR_4: Leucine Rich r 96.2 0.0044 9.5E-08 37.3 2.6 37 306-353 1-38 (44)
53 KOG4308 LRR-containing protein 95.9 0.0015 3.2E-08 61.6 -1.1 198 107-328 89-311 (478)
54 KOG2739 Leucine-rich acidic nu 95.8 0.0035 7.6E-08 52.7 0.8 89 183-273 64-153 (260)
55 KOG2123 Uncharacterized conser 95.7 0.0052 1.1E-07 52.3 1.7 56 211-274 19-74 (388)
56 KOG1859 Leucine-rich repeat pr 95.7 0.0012 2.5E-08 63.4 -2.6 103 157-274 186-290 (1096)
57 KOG2739 Leucine-rich acidic nu 95.6 0.0059 1.3E-07 51.4 1.5 63 131-195 64-127 (260)
58 PRK15370 E3 ubiquitin-protein 95.6 0.055 1.2E-06 54.1 8.4 54 211-274 325-378 (754)
59 KOG0617 Ras suppressor protein 95.4 0.00031 6.7E-09 55.1 -6.0 131 103-248 31-161 (264)
60 PLN03150 hypothetical protein; 95.3 0.028 6.1E-07 55.4 5.4 12 262-273 465-476 (623)
61 PF00646 F-box: F-box domain; 95.2 0.0055 1.2E-07 37.7 0.1 28 7-34 5-32 (48)
62 KOG4308 LRR-containing protein 95.1 0.021 4.6E-07 53.9 3.8 181 97-286 107-312 (478)
63 KOG1644 U2-associated snRNP A' 95.1 0.0072 1.6E-07 49.0 0.5 108 183-315 41-149 (233)
64 smart00256 FBOX A Receptor for 94.9 0.0022 4.7E-08 37.9 -2.2 27 8-34 1-27 (41)
65 PF13855 LRR_8: Leucine rich r 94.9 0.00072 1.6E-08 44.2 -4.8 10 306-315 49-58 (61)
66 PLN03150 hypothetical protein; 94.9 0.046 1E-06 53.9 5.6 108 134-249 420-527 (623)
67 KOG0472 Leucine-rich repeat pr 94.7 0.1 2.2E-06 47.1 6.5 107 130-248 433-539 (565)
68 PLN03215 ascorbic acid mannose 94.4 0.022 4.9E-07 51.3 1.9 38 41-78 2-40 (373)
69 KOG2997 F-box protein FBX9 [Ge 94.2 0.016 3.5E-07 50.0 0.6 40 39-78 103-147 (366)
70 KOG0617 Ras suppressor protein 93.9 0.00026 5.6E-09 55.6 -9.8 149 81-247 35-183 (264)
71 PRK15386 type III secretion pr 93.8 0.071 1.5E-06 48.9 3.9 72 182-272 50-121 (426)
72 PRK15386 type III secretion pr 93.6 0.17 3.8E-06 46.4 6.0 126 123-276 44-169 (426)
73 PF13516 LRR_6: Leucine Rich r 93.4 0.078 1.7E-06 27.0 2.1 22 263-285 2-23 (24)
74 PF12799 LRR_4: Leucine Rich r 93.4 0.12 2.6E-06 31.0 3.2 11 236-246 23-33 (44)
75 PF13504 LRR_7: Leucine rich r 93.1 0.08 1.7E-06 24.5 1.6 15 338-353 1-15 (17)
76 KOG0281 Beta-TrCP (transducin 93.0 0.03 6.5E-07 48.8 0.2 67 11-79 45-115 (499)
77 COG4886 Leucine-rich repeat (L 92.7 0.24 5.2E-06 46.0 5.7 39 302-350 251-289 (394)
78 KOG1644 U2-associated snRNP A' 91.1 0.18 3.9E-06 41.1 2.5 127 187-349 22-151 (233)
79 COG4886 Leucine-rich repeat (L 89.3 0.32 6.9E-06 45.1 3.1 170 105-315 116-286 (394)
80 KOG0531 Protein phosphatase 1, 89.0 0.13 2.8E-06 48.1 0.2 102 131-247 94-196 (414)
81 KOG3763 mRNA export factor TAP 86.0 1.4 3E-05 41.6 5.0 43 204-246 211-253 (585)
82 smart00368 LRR_RI Leucine rich 85.4 1.5 3.2E-05 23.2 3.0 25 306-331 2-26 (28)
83 PF00560 LRR_1: Leucine Rich R 84.5 0.56 1.2E-05 23.2 1.0 14 339-353 1-14 (22)
84 KOG3763 mRNA export factor TAP 83.8 2.5 5.5E-05 40.0 5.6 91 176-269 210-307 (585)
85 KOG0274 Cdc4 and related F-box 78.7 0.73 1.6E-05 44.4 0.4 41 37-77 102-142 (537)
86 PF09372 PRANC: PRANC domain; 78.3 1.2 2.7E-05 31.9 1.4 27 40-66 69-95 (97)
87 KOG4579 Leucine-rich repeat (L 78.1 1 2.2E-05 34.6 0.9 11 183-193 99-109 (177)
88 PF13013 F-box-like_2: F-box-l 76.2 1.4 3.1E-05 32.2 1.2 30 42-71 21-50 (109)
89 KOG0531 Protein phosphatase 1, 74.7 1.6 3.5E-05 40.8 1.5 110 208-353 92-201 (414)
90 KOG4579 Leucine-rich repeat (L 73.6 1.7 3.7E-05 33.4 1.1 85 184-274 27-111 (177)
91 KOG2997 F-box protein FBX9 [Ge 69.7 1.5 3.2E-05 38.4 -0.0 30 6-35 108-142 (366)
92 PF07723 LRR_2: Leucine Rich R 65.4 5.2 0.00011 20.8 1.5 7 135-141 3-9 (26)
93 PLN03215 ascorbic acid mannose 54.3 4.9 0.00011 36.7 0.4 29 4-32 3-32 (373)
94 KOG0281 Beta-TrCP (transducin 53.4 1.4 2.9E-05 39.0 -3.1 41 6-46 76-122 (499)
95 PHA02875 ankyrin repeat protei 37.0 19 0.00042 33.5 1.6 27 40-66 384-410 (413)
96 KOG3735 Tropomodulin and leiom 36.0 1.3E+02 0.0029 27.0 6.2 101 200-315 187-292 (353)
97 smart00369 LRR_TYP Leucine-ric 35.4 36 0.00078 17.1 1.8 10 306-315 2-11 (26)
98 smart00370 LRR Leucine-rich re 35.4 36 0.00078 17.1 1.8 10 306-315 2-11 (26)
99 PHA03100 ankyrin repeat protei 34.1 21 0.00046 34.0 1.3 29 40-68 445-473 (480)
100 PF03382 DUF285: Mycoplasma pr 33.8 23 0.00051 26.4 1.3 6 210-215 60-65 (120)
101 KOG3926 F-box proteins [Amino 32.3 52 0.0011 28.4 3.1 38 39-76 198-236 (332)
102 smart00365 LRR_SD22 Leucine-ri 30.7 49 0.0011 17.1 1.8 14 306-320 2-15 (26)
103 PHA02878 ankyrin repeat protei 27.8 30 0.00065 33.1 1.2 27 40-66 444-470 (477)
104 PHA02989 ankyrin repeat protei 27.7 31 0.00067 33.1 1.3 29 40-68 456-484 (494)
105 KOG2502 Tub family proteins [G 27.5 44 0.00096 30.0 2.0 37 41-77 43-87 (355)
106 PF11900 DUF3420: Domain of un 23.1 54 0.0012 20.1 1.3 17 3-19 6-22 (49)
107 KOG3735 Tropomodulin and leiom 23.1 2.7E+02 0.0059 25.1 6.0 96 148-246 188-292 (353)
108 PHA02798 ankyrin-like protein; 22.5 47 0.001 31.8 1.5 27 39-65 460-486 (489)
109 PF07735 FBA_2: F-box associat 20.6 2.5E+02 0.0055 18.1 5.5 36 308-345 34-69 (70)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.96 E-value=1.3e-30 Score=225.03 Aligned_cols=286 Identities=28% Similarity=0.497 Sum_probs=219.2
Q ss_pred CCCCHHHHHHHhcCCCccchhhhcccchhHHHhh------------------------------hccCceeecccccccc
Q 017279 44 KDIPMELLLRILSLVDEPTVIVASGVCSGWRDAI------------------------------CLGLTHLSLSWCKNNM 93 (374)
Q Consensus 44 ~~Lp~eil~~If~~L~~~~l~~~~~vc~~w~~~~------------------------------~~~l~~L~l~~~~~~~ 93 (374)
..||.|++.+||++|+.+.+++++++|+.|...+ +..++.+.+.++....
T Consensus 73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG~r~v~ 152 (483)
T KOG4341|consen 73 RSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRGCRAVG 152 (483)
T ss_pred ccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCCcceehHhhhhccccccccccccccCC
Confidence 3455555555555555555555555555555433 2347888888888888
Q ss_pred hHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCH
Q 017279 94 NNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSD 173 (374)
Q Consensus 94 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~ 173 (374)
...+..+...||++++|++. .+..+++..+..+.++|++|++|++-.|..+++..++.++..|++|++|++++|+.++.
T Consensus 153 ~sslrt~~~~CpnIehL~l~-gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~ 231 (483)
T KOG4341|consen 153 DSSLRTFASNCPNIEHLALY-GCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISG 231 (483)
T ss_pred cchhhHHhhhCCchhhhhhh-cceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhc
Confidence 88888888999999999998 88899999999999999999999999988999999999999999999999999998888
Q ss_pred HHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHH
Q 017279 174 HALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDD 253 (374)
Q Consensus 174 ~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~ 253 (374)
.++..+...+..++.+.+.+|.. ...+.+..+...++.+-++++..|..++|+++..+..+|..|+.|..++|..+++.
T Consensus 232 ~gv~~~~rG~~~l~~~~~kGC~e-~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~ 310 (483)
T KOG4341|consen 232 NGVQALQRGCKELEKLSLKGCLE-LELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDE 310 (483)
T ss_pred CcchHHhccchhhhhhhhccccc-ccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchH
Confidence 88888887888888888888875 67777777887888888888888888888888888888888888988888888888
Q ss_pred HHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCC
Q 017279 254 SVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPA 333 (374)
Q Consensus 254 ~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~ 333 (374)
.+..+.+++++|+.|-++.|.++++.++..++..+ +.|+.+++-+|..+++..+..+.
T Consensus 311 ~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~-----------------~~Le~l~~e~~~~~~d~tL~sls----- 368 (483)
T KOG4341|consen 311 VLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNC-----------------PHLERLDLEECGLITDGTLASLS----- 368 (483)
T ss_pred HHHHHhcCCCceEEEeccccchhhhhhhhhhhcCC-----------------hhhhhhcccccceehhhhHhhhc-----
Confidence 88888888888999999888888888888888776 44555555444444444333333
Q ss_pred ccCCCCCceEEecCCcccccc
Q 017279 334 LHTCSGRHSLVMSGCLNLTSV 354 (374)
Q Consensus 334 l~~~~~L~~L~ls~C~~l~~~ 354 (374)
.+||.||+|.++.|..+|.+
T Consensus 369 -~~C~~lr~lslshce~itD~ 388 (483)
T KOG4341|consen 369 -RNCPRLRVLSLSHCELITDE 388 (483)
T ss_pred -cCCchhccCChhhhhhhhhh
Confidence 34444455555555555444
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.95 E-value=1.1e-28 Score=213.31 Aligned_cols=332 Identities=29% Similarity=0.457 Sum_probs=238.3
Q ss_pred CCcCHHHHHHHHHHHHHhccccCCCCc--cccCCccCCccCCCCHHHHHHHhcCCCccchhhhcccchh-----------
Q 017279 6 TNLSSEDLNLCFEKMMMAGAGADRAGG--VKMDGVVITEWKDIPMELLLRILSLVDEPTVIVASGVCSG----------- 72 (374)
Q Consensus 6 ~~lp~e~~~~i~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~Lp~eil~~If~~L~~~~l~~~~~vc~~----------- 72 (374)
.+||+|+...+||+||..++.++|++| |+.-+.+...|+....--... +++-.-...+..-|..
T Consensus 73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~r---Dv~g~VV~~~~~Rcgg~lk~LSlrG~r 149 (483)
T KOG4341|consen 73 RSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQR---DVDGGVVENMISRCGGFLKELSLRGCR 149 (483)
T ss_pred ccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchh---cCCCcceehHhhhhccccccccccccc
Confidence 499999999999999999999999999 666666666776543211110 0111111111111111
Q ss_pred --------HHHhhhccCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCC
Q 017279 73 --------WRDAICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFK 144 (374)
Q Consensus 73 --------w~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 144 (374)
-....++++.+|.+.++...++.....+.+.|++|+++++. .|..+++..+..+...|++|++|+++.|..
T Consensus 150 ~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~-~c~~iT~~~Lk~la~gC~kL~~lNlSwc~q 228 (483)
T KOG4341|consen 150 AVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLH-SCSSITDVSLKYLAEGCRKLKYLNLSWCPQ 228 (483)
T ss_pred cCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhc-ccchhHHHHHHHHHHhhhhHHHhhhccCch
Confidence 11123566888888888888887788888888888888888 677888888888888888888888888877
Q ss_pred CCHHHHHHHHhcCCCCcEEeec--------------------------CCCCCCHHHHHHHHhcCCCCcEEEcCCCccCc
Q 017279 145 LSDRSLYALAHGCPNLTRLNIS--------------------------GCTSFSDHALAYLCGFCRKLKILNLCGCVKAA 198 (374)
Q Consensus 145 ~~~~~~~~l~~~~~~L~~L~L~--------------------------~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~ 198 (374)
+++.+++.+..++.+++.+.+. .|..+++.++..+...+..|+.|+.++|.. +
T Consensus 229 i~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~-~ 307 (483)
T KOG4341|consen 229 ISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTD-I 307 (483)
T ss_pred hhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCC-C
Confidence 7665555555555544444444 444455555555555566677777777665 6
Q ss_pred cHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCH
Q 017279 199 TDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITD 278 (374)
Q Consensus 199 ~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~ 278 (374)
++..+..+..++++|+.|-+.+|..+++.++..+..+++.|+.+++.+|..+++..+..+..+||.|+.|.+++|..+++
T Consensus 308 ~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD 387 (483)
T KOG4341|consen 308 TDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITD 387 (483)
T ss_pred chHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhh
Confidence 77777777777888888888877777787777777778888888888877777777777777888888888888888888
Q ss_pred HHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCccccccccee
Q 017279 279 RAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVHCVC 358 (374)
Q Consensus 279 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~~~~~~~ 358 (374)
+++..+.... .....|+.+.+++|+.+++..++.+ ..|++|+.+++-+|..++.+...-
T Consensus 388 ~gi~~l~~~~--------------c~~~~l~~lEL~n~p~i~d~~Le~l-------~~c~~Leri~l~~~q~vtk~~i~~ 446 (483)
T KOG4341|consen 388 EGIRHLSSSS--------------CSLEGLEVLELDNCPLITDATLEHL-------SICRNLERIELIDCQDVTKEAISR 446 (483)
T ss_pred hhhhhhhhcc--------------ccccccceeeecCCCCchHHHHHHH-------hhCcccceeeeechhhhhhhhhHH
Confidence 8777776532 1457899999999999999888876 689999999999999988776655
Q ss_pred cCccc
Q 017279 359 AGQSH 363 (374)
Q Consensus 359 ~~~~~ 363 (374)
..+++
T Consensus 447 ~~~~l 451 (483)
T KOG4341|consen 447 FATHL 451 (483)
T ss_pred HHhhC
Confidence 44433
No 3
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5.5e-28 Score=200.32 Aligned_cols=267 Identities=25% Similarity=0.424 Sum_probs=215.0
Q ss_pred CccCCCCHHHHHHHhcCCCccchhhhcccchhHHHhhhc--cCceeecccccccchH-----------------------
Q 017279 41 TEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICL--GLTHLSLSWCKNNMNN----------------------- 95 (374)
Q Consensus 41 ~~~~~Lp~eil~~If~~L~~~~l~~~~~vc~~w~~~~~~--~l~~L~l~~~~~~~~~----------------------- 95 (374)
..|.+||+||+..||+.|..+++..++.||+|||..... .|..+|+..-......
T Consensus 96 v~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~rgV~v~Rlar~~~~~pr 175 (419)
T KOG2120|consen 96 VSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSRGVIVFRLARSFMDQPR 175 (419)
T ss_pred CCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhCCeEEEEcchhhhcCch
Confidence 349999999999999999999999999999999987643 3666666532211111
Q ss_pred HHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHH
Q 017279 96 LVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHA 175 (374)
Q Consensus 96 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~ 175 (374)
+..-....-.++++|+++ ...++...+..+.+.|.+|+.|.+.+. .+.+.....++++ .+|+.|+++.|.+++..+
T Consensus 176 lae~~~~frsRlq~lDLS--~s~it~stl~~iLs~C~kLk~lSlEg~-~LdD~I~~~iAkN-~~L~~lnlsm~sG~t~n~ 251 (419)
T KOG2120|consen 176 LAEHFSPFRSRLQHLDLS--NSVITVSTLHGILSQCSKLKNLSLEGL-RLDDPIVNTIAKN-SNLVRLNLSMCSGFTENA 251 (419)
T ss_pred hhhhhhhhhhhhHHhhcc--hhheeHHHHHHHHHHHHhhhhcccccc-ccCcHHHHHHhcc-ccceeeccccccccchhH
Confidence 111111122469999999 778899999999999999999999995 7888888888874 899999999999999999
Q ss_pred HHHHHhcCCCCcEEEcCCCccCccHHHHHH-HHhcCCCCCEEeccCCC-CCCHHHHHHHHhcCCCCCeeecCCCCCCCHH
Q 017279 176 LAYLCGFCRKLKILNLCGCVKAATDYALQA-IGRNCNQLQSLNLGWCE-DVGDVGVMNLAYGCPDLRSLDLCGCVCITDD 253 (374)
Q Consensus 176 ~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~-l~~~~~~L~~L~l~~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~ 253 (374)
+..+...|..|.+|++++|.. ..+.... +..--++|+.|+++++. ++....+..+.+.||+|.+||++.|..++++
T Consensus 252 ~~ll~~scs~L~~LNlsWc~l--~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~ 329 (419)
T KOG2120|consen 252 LQLLLSSCSRLDELNLSWCFL--FTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKND 329 (419)
T ss_pred HHHHHHhhhhHhhcCchHhhc--cchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCch
Confidence 999999999999999999874 3333444 33345789999998863 4566678888899999999999999999998
Q ss_pred HHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCC
Q 017279 254 SVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPA 333 (374)
Q Consensus 254 ~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~ 333 (374)
.+..+.+ ++.|++|.++.|..|.++.+.++... |+|.+|++.|| +++..++-+...+|.
T Consensus 330 ~~~~~~k-f~~L~~lSlsRCY~i~p~~~~~l~s~------------------psl~yLdv~g~--vsdt~mel~~e~~~~ 388 (419)
T KOG2120|consen 330 CFQEFFK-FNYLQHLSLSRCYDIIPETLLELNSK------------------PSLVYLDVFGC--VSDTTMELLKEMLSH 388 (419)
T ss_pred HHHHHHh-cchheeeehhhhcCCChHHeeeeccC------------------cceEEEEeccc--cCchHHHHHHHhCcc
Confidence 8777775 99999999999999998888877766 89999999996 566677777655555
Q ss_pred c
Q 017279 334 L 334 (374)
Q Consensus 334 l 334 (374)
+
T Consensus 389 l 389 (419)
T KOG2120|consen 389 L 389 (419)
T ss_pred c
Confidence 4
No 4
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=6.6e-22 Score=164.42 Aligned_cols=274 Identities=22% Similarity=0.252 Sum_probs=214.2
Q ss_pred CCCcCHHHHHHHHHHHHHhccccCCCCc--cccCCccCCccCCC-------CHHHHHHHhcCCCccchhhhcccc---hh
Q 017279 5 ATNLSSEDLNLCFEKMMMAGAGADRAGG--VKMDGVVITEWKDI-------PMELLLRILSLVDEPTVIVASGVC---SG 72 (374)
Q Consensus 5 ~~~lp~e~~~~i~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~L-------p~eil~~If~~L~~~~l~~~~~vc---~~ 72 (374)
|.-||||++..||++|..-++..++.|| |.+-+.+.+.|..+ .++.+.++.+.=- -..++++.. .+
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~rgV--~v~Rlar~~~~~pr 175 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSRGV--IVFRLARSFMDQPR 175 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhCCe--EEEEcchhhhcCch
Confidence 5579999999999999999999999999 44556667777755 3456666655310 011222111 11
Q ss_pred HHH---hhhccCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHH
Q 017279 73 WRD---AICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRS 149 (374)
Q Consensus 73 w~~---~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~ 149 (374)
+.+ .+...++++|++.... +...+..+...|.+|+.|.+. ...+++.....+++ ..+|+.|+++++..++..+
T Consensus 176 lae~~~~frsRlq~lDLS~s~i-t~stl~~iLs~C~kLk~lSlE--g~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~ 251 (419)
T KOG2120|consen 176 LAEHFSPFRSRLQHLDLSNSVI-TVSTLHGILSQCSKLKNLSLE--GLRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENA 251 (419)
T ss_pred hhhhhhhhhhhhHHhhcchhhe-eHHHHHHHHHHHHhhhhcccc--ccccCcHHHHHHhc-cccceeeccccccccchhH
Confidence 221 2234588999987643 445677888899999999999 77888888888877 6899999999999999999
Q ss_pred HHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHH
Q 017279 150 LYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGV 229 (374)
Q Consensus 150 ~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~ 229 (374)
+..+...|..|..|++++|..+++.....+.+--++|..|+++||...+.+..+..+.+.||+|.+|+++++..+++..+
T Consensus 252 ~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~ 331 (419)
T KOG2120|consen 252 LQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCF 331 (419)
T ss_pred HHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHH
Confidence 99999999999999999987777664444455578999999999877677778888899999999999999888888555
Q ss_pred HHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcC
Q 017279 230 MNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSG 288 (374)
Q Consensus 230 ~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~ 288 (374)
..+. .++.|++|.++.|..+.++.+..+.. .|.|.+|++.+| +++..++.+...+
T Consensus 332 ~~~~-kf~~L~~lSlsRCY~i~p~~~~~l~s-~psl~yLdv~g~--vsdt~mel~~e~~ 386 (419)
T KOG2120|consen 332 QEFF-KFNYLQHLSLSRCYDIIPETLLELNS-KPSLVYLDVFGC--VSDTTMELLKEML 386 (419)
T ss_pred HHHH-hcchheeeehhhhcCCChHHeeeecc-CcceEEEEeccc--cCchHHHHHHHhC
Confidence 5554 68999999999999998888766654 899999999998 6777777776654
No 5
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.57 E-value=1.3e-12 Score=117.68 Aligned_cols=250 Identities=22% Similarity=0.185 Sum_probs=158.8
Q ss_pred cCceeecccccccchH--HHHHHhhcCCCCcEEEeeCCCCCCC--hHHHH---HHHHhCCCCCEEecCCCCCC--CHHHH
Q 017279 80 GLTHLSLSWCKNNMNN--LVLSLAPKLTKLQTLVLRQDKPQLE--DNAVE---AIANSCHDLQDLDLSKSFKL--SDRSL 150 (374)
Q Consensus 80 ~l~~L~l~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~---~l~~~~~~L~~L~l~~~~~~--~~~~~ 150 (374)
.++.+++..+...... .+.......+++++++++ ...+. ...+. .....+++|+.|+++++... ....+
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~--~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLS--LNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecc--ccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence 3788888876653322 234445567788888887 33444 22222 22233678999999887432 22233
Q ss_pred HHHHhcCCCCcEEeecCCCCCCHHHHHHH---HhcC-CCCcEEEcCCCccCccHHH---HHHHHhcCCCCCEEeccCCCC
Q 017279 151 YALAHGCPNLTRLNISGCTSFSDHALAYL---CGFC-RKLKILNLCGCVKAATDYA---LQAIGRNCNQLQSLNLGWCED 223 (374)
Q Consensus 151 ~~l~~~~~~L~~L~L~~~~~~~~~~~~~l---~~~~-~~L~~L~L~~~~~~~~~~~---~~~l~~~~~~L~~L~l~~~~~ 223 (374)
..+... ++|++|++++| .+.+.+...+ ...+ ++|++|+++++. ++... +......+++|++|+++++.
T Consensus 102 ~~l~~~-~~L~~L~ls~~-~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~--l~~~~~~~~~~~~~~~~~L~~L~l~~n~- 176 (319)
T cd00116 102 ESLLRS-SSLQELKLNNN-GLGDRGLRLLAKGLKDLPPALEKLVLGRNR--LEGASCEALAKALRANRDLKELNLANNG- 176 (319)
T ss_pred HHHhcc-CcccEEEeeCC-ccchHHHHHHHHHHHhCCCCceEEEcCCCc--CCchHHHHHHHHHHhCCCcCEEECcCCC-
Confidence 344444 56999999885 4555444432 2345 788999999876 44333 23334456789999998854
Q ss_pred CCHHHHHHHHh---cCCCCCeeecCCCCCCCHHHHHHH---HhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCcccc
Q 017279 224 VGDVGVMNLAY---GCPDLRSLDLCGCVCITDDSVIAL---ANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWE 297 (374)
Q Consensus 224 ~~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~l~~l---~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~ 297 (374)
+++..+..+.. .+++|++|++++| .+++.....+ ...+++|++|++++|. +++.++..+......
T Consensus 177 l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~------- 247 (319)
T cd00116 177 IGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLS------- 247 (319)
T ss_pred CchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhc-------
Confidence 66655554433 3468999999985 5665554333 3357889999999885 777677666544210
Q ss_pred ccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCcccccccc
Q 017279 298 SMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVHC 356 (374)
Q Consensus 298 ~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~~~~~ 356 (374)
..+.|++|++++| .+++.+...+.+.++. +++|+.|+++++. ++.+++
T Consensus 248 ------~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~---~~~L~~l~l~~N~-l~~~~~ 295 (319)
T cd00116 248 ------PNISLLTLSLSCN-DITDDGAKDLAEVLAE---KESLLELDLRGNK-FGEEGA 295 (319)
T ss_pred ------cCCCceEEEccCC-CCCcHHHHHHHHHHhc---CCCccEEECCCCC-CcHHHH
Confidence 1268999999885 6776666666655443 3788999999884 665543
No 6
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.52 E-value=2.5e-12 Score=115.78 Aligned_cols=233 Identities=25% Similarity=0.240 Sum_probs=158.1
Q ss_pred HHHhhcCCCCcEEEeeCCCCCCChHHHHH---HHHhCCCCCEEecCCCCCCC--HHHHHHH---HhcCCCCcEEeecCCC
Q 017279 98 LSLAPKLTKLQTLVLRQDKPQLEDNAVEA---IANSCHDLQDLDLSKSFKLS--DRSLYAL---AHGCPNLTRLNISGCT 169 (374)
Q Consensus 98 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---l~~~~~~L~~L~l~~~~~~~--~~~~~~l---~~~~~~L~~L~L~~~~ 169 (374)
...+....+++.++++ ...+++..... .....+++++++++++ .+. ...+..+ ...+++|++|+++++.
T Consensus 16 ~~~~~~l~~L~~l~l~--~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 92 (319)
T cd00116 16 TELLPKLLCLQVLRLE--GNTLGEEAAKALASALRPQPSLKELCLSLN-ETGRIPRGLQSLLQGLTKGCGLQELDLSDNA 92 (319)
T ss_pred HHHHHHHhhccEEeec--CCCCcHHHHHHHHHHHhhCCCceEEecccc-ccCCcchHHHHHHHHHHhcCceeEEEccCCC
Confidence 3455566779999999 55665544333 3345677999999886 344 2333322 2337899999999864
Q ss_pred CC--CHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHH---HhcC-CCCCEEeccCCCCCCHHH---HHHHHhcCCCCC
Q 017279 170 SF--SDHALAYLCGFCRKLKILNLCGCVKAATDYALQAI---GRNC-NQLQSLNLGWCEDVGDVG---VMNLAYGCPDLR 240 (374)
Q Consensus 170 ~~--~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l---~~~~-~~L~~L~l~~~~~~~~~~---~~~l~~~~~~L~ 240 (374)
.. ....+..+... ++|++|+++++. +.+.....+ ...+ ++|+.|+++++. ++... +......+++|+
T Consensus 93 ~~~~~~~~~~~l~~~-~~L~~L~ls~~~--~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~L~ 168 (319)
T cd00116 93 LGPDGCGVLESLLRS-SSLQELKLNNNG--LGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKALRANRDLK 168 (319)
T ss_pred CChhHHHHHHHHhcc-CcccEEEeeCCc--cchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHHHHhCCCcC
Confidence 32 22233334444 669999999876 554444332 2345 899999999875 55333 333445678999
Q ss_pred eeecCCCCCCCHHHHHHHHhc---CCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCC
Q 017279 241 SLDLCGCVCITDDSVIALANG---CPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCT 317 (374)
Q Consensus 241 ~L~l~~~~~l~~~~l~~l~~~---~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 317 (374)
.|++++| .+++..+..+... .++|+.|++++|. +++.++..+.... ..+++|++|++++|
T Consensus 169 ~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~~--------------~~~~~L~~L~ls~n- 231 (319)
T cd00116 169 ELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGASALAETL--------------ASLKSLEVLNLGDN- 231 (319)
T ss_pred EEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHHHHHHHHh--------------cccCCCCEEecCCC-
Confidence 9999995 6776666555433 5699999999995 8877776665432 24589999999994
Q ss_pred CCCHHHHHHHHhhCCCccCCCCCceEEecCCcccccccce
Q 017279 318 ALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVHCV 357 (374)
Q Consensus 318 ~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~~~~~~ 357 (374)
.+++..+..++..++. ..++|+.|++++| .+++.+..
T Consensus 232 ~l~~~~~~~l~~~~~~--~~~~L~~L~l~~n-~i~~~~~~ 268 (319)
T cd00116 232 NLTDAGAAALASALLS--PNISLLTLSLSCN-DITDDGAK 268 (319)
T ss_pred cCchHHHHHHHHHHhc--cCCCceEEEccCC-CCCcHHHH
Confidence 7888888877765543 4688999999999 47654443
No 7
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.51 E-value=1.8e-13 Score=130.35 Aligned_cols=145 Identities=32% Similarity=0.574 Sum_probs=76.6
Q ss_pred HHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCC-CCCCC--HHHHHHHHhcCCCCcEEeecCCCCCCHHH
Q 017279 99 SLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSK-SFKLS--DRSLYALAHGCPNLTRLNISGCTSFSDHA 175 (374)
Q Consensus 99 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~-~~~~~--~~~~~~l~~~~~~L~~L~L~~~~~~~~~~ 175 (374)
.+...+++++.+.+. .+..+.+.....+...++.|++|++.+ +.... ......+...|++|+.|+++++..+++.+
T Consensus 182 ~l~~~~~~L~~l~l~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~ 260 (482)
T KOG1947|consen 182 RLLSSCPLLKRLSLS-GCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIG 260 (482)
T ss_pred HHHhhCchhhHhhhc-ccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchh
Confidence 333345556666555 444555544445555556666666654 11111 11122244445566666666554455555
Q ss_pred HHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecC
Q 017279 176 LAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLC 245 (374)
Q Consensus 176 ~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~ 245 (374)
+..+...|++|++|.+.+|.. +++.++..++..|++|++|++++|..+++.++..+...|++|+.|.+.
T Consensus 261 l~~l~~~c~~L~~L~l~~c~~-lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 261 LSALASRCPNLETLSLSNCSN-LTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL 329 (482)
T ss_pred HHHHHhhCCCcceEccCCCCc-cchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence 555555566666666555543 455556666656666666666655555555555555555555554433
No 8
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.50 E-value=2e-13 Score=130.04 Aligned_cols=256 Identities=30% Similarity=0.402 Sum_probs=180.6
Q ss_pred ccCceeecccccccchHHHHHHhhcCCCCcEEEeeCC-CCCC--ChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHh
Q 017279 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQD-KPQL--EDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAH 155 (374)
Q Consensus 79 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~--~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 155 (374)
..++.+.+..+....+.....+...+++|+.|.++ . +... .......+...+++|+.|+++.+..+++.++..++.
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~-~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLS-GCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHhhCchhheeccc-CcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 44677777777666665567788899999999998 3 2222 233334466778999999999987799999999999
Q ss_pred cCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCC---CCCHHHHHHH
Q 017279 156 GCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCE---DVGDVGVMNL 232 (374)
Q Consensus 156 ~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~---~~~~~~~~~l 232 (374)
.|++|++|.+.+|..+++.++..+...|++|++|++++|.. +++..+..+...|++|+.|.+.... .+++..+...
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~-~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~ 345 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG-LTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGL 345 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc-chHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHh
Confidence 99999999999888899999999999999999999999986 5778888888889998888765443 2444443333
Q ss_pred HhcCC-CCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEE
Q 017279 233 AYGCP-DLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSL 311 (374)
Q Consensus 233 ~~~~~-~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L 311 (374)
....+ .+..+.+.+|+.+++..+.... .......+.+.+|+.++ ..+...... +..++.|
T Consensus 346 ~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~-~~l~~~~~~-----------------~~~l~~L 406 (482)
T KOG1947|consen 346 LTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLT-ESLELRLCR-----------------SDSLRVL 406 (482)
T ss_pred hccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccc-hHHHHHhcc-----------------CCccceE
Confidence 33222 4444444444444444443333 11111134445555554 444433333 2349999
Q ss_pred ecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCcccccccceecCc
Q 017279 312 NISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVHCVCAGQ 361 (374)
Q Consensus 312 ~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~~~~~~~~~~ 361 (374)
+++.|..+++..+...... |.+++.+++++|+.++........+
T Consensus 407 ~l~~~~~~t~~~l~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~ 450 (482)
T KOG1947|consen 407 NLSDCRLVTDKGLRCLADS------CSNLKDLDLSGCRVITLKSLEGFAS 450 (482)
T ss_pred ecccCccccccchHHHhhh------hhccccCCccCcccccchhhhhhhc
Confidence 9999999998888776522 7888999999999998877654433
No 9
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.26 E-value=1.5e-10 Score=99.28 Aligned_cols=257 Identities=23% Similarity=0.262 Sum_probs=165.1
Q ss_pred ccCceeecccccccch--HHHHHHhhcCCCCcEEEeeCCCC--CCChHH------HHHHHHhCCCCCEEecCCCCCCC--
Q 017279 79 LGLTHLSLSWCKNNMN--NLVLSLAPKLTKLQTLVLRQDKP--QLEDNA------VEAIANSCHDLQDLDLSKSFKLS-- 146 (374)
Q Consensus 79 ~~l~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~------~~~l~~~~~~L~~L~l~~~~~~~-- 146 (374)
..++.++|++...-.. ..+.......++|+..+++ ... ...+.. +......+|.|++|+|+.+..-.
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~s-d~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLS-DMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehH-hhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 3478888887654332 2344455566788888887 111 111221 22222347899999999973332
Q ss_pred HHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHH------------HhcCCCCcEEEcCCCccC-ccHHHHHHHHhcCCCC
Q 017279 147 DRSLYALAHGCPNLTRLNISGCTSFSDHALAYL------------CGFCRKLKILNLCGCVKA-ATDYALQAIGRNCNQL 213 (374)
Q Consensus 147 ~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l------------~~~~~~L~~L~L~~~~~~-~~~~~~~~l~~~~~~L 213 (374)
...+..+.+.|..|++|.|.+| ++.+.+-..+ ...-+.|+.+..+..... .....+...++.++.|
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l 187 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL 187 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc
Confidence 2356667777999999999986 6655443321 234578999988764421 1223445567788999
Q ss_pred CEEeccCCCCCCHHHHHH---HHhcCCCCCeeecCCCCCCCHHHHHHH---HhcCCCCceEecCCCCCCCHHHHHHHHhc
Q 017279 214 QSLNLGWCEDVGDVGVMN---LAYGCPDLRSLDLCGCVCITDDSVIAL---ANGCPHLRSLGLYYCRNITDRAIYSLAQS 287 (374)
Q Consensus 214 ~~L~l~~~~~~~~~~~~~---l~~~~~~L~~L~l~~~~~l~~~~l~~l---~~~~~~L~~L~l~~~~~i~~~~~~~l~~~ 287 (374)
+.+++..+. +..++... -+.+||+|+.|++.. +.++.++-..+ ...+|+|+.|++++|- +.+.+..++...
T Consensus 188 eevr~~qN~-I~~eG~~al~eal~~~~~LevLdl~D-Ntft~egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~a 264 (382)
T KOG1909|consen 188 EEVRLSQNG-IRPEGVTALAEALEHCPHLEVLDLRD-NTFTLEGSVALAKALSSWPHLRELNLGDCL-LENEGAIAFVDA 264 (382)
T ss_pred ceEEEeccc-ccCchhHHHHHHHHhCCcceeeeccc-chhhhHHHHHHHHHhcccchheeecccccc-cccccHHHHHHH
Confidence 999997643 44444433 345799999999999 45665544333 3347889999999995 777777666544
Q ss_pred CCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCccc--cccccee
Q 017279 288 GVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNL--TSVHCVC 358 (374)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l--~~~~~~~ 358 (374)
-.+ ..|+|+.|.+.+ +.++-.+...++.... ..|.|++|++++|. + .++++..
T Consensus 265 l~~-------------~~p~L~vl~l~g-NeIt~da~~~la~~~~---ek~dL~kLnLngN~-l~e~de~i~e 319 (382)
T KOG1909|consen 265 LKE-------------SAPSLEVLELAG-NEITRDAALALAACMA---EKPDLEKLNLNGNR-LGEKDEGIDE 319 (382)
T ss_pred Hhc-------------cCCCCceeccCc-chhHHHHHHHHHHHHh---cchhhHHhcCCccc-ccccchhHHH
Confidence 221 348999999999 5777666655554433 36889999999996 5 4444433
No 10
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.23 E-value=1.7e-11 Score=126.63 Aligned_cols=254 Identities=19% Similarity=0.160 Sum_probs=142.3
Q ss_pred chhHHHhhhc---cCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCC
Q 017279 70 CSGWRDAICL---GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLS 146 (374)
Q Consensus 70 c~~w~~~~~~---~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~ 146 (374)
|..|..+.|. .++.|++....... .....+..+++|+.|+++ .+.+.......+...+++|++|+++++. +.
T Consensus 57 ~c~w~gv~c~~~~~v~~L~L~~~~i~~--~~~~~~~~l~~L~~L~Ls--~n~~~~~ip~~~~~~l~~L~~L~Ls~n~-l~ 131 (968)
T PLN00113 57 VCLWQGITCNNSSRVVSIDLSGKNISG--KISSAIFRLPYIQTINLS--NNQLSGPIPDDIFTTSSSLRYLNLSNNN-FT 131 (968)
T ss_pred CCcCcceecCCCCcEEEEEecCCCccc--cCChHHhCCCCCCEEECC--CCccCCcCChHHhccCCCCCEEECcCCc-cc
Confidence 4567766653 47788887643221 123345578999999998 4455444444444457899999998863 32
Q ss_pred HHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCH
Q 017279 147 DRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGD 226 (374)
Q Consensus 147 ~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 226 (374)
..... ..+++|++|+++++ .+... ++.....+++|++|+++++. +... +......+++|++|+++++. +..
T Consensus 132 ~~~p~---~~l~~L~~L~Ls~n-~~~~~-~p~~~~~l~~L~~L~L~~n~--l~~~-~p~~~~~l~~L~~L~L~~n~-l~~ 202 (968)
T PLN00113 132 GSIPR---GSIPNLETLDLSNN-MLSGE-IPNDIGSFSSLKVLDLGGNV--LVGK-IPNSLTNLTSLEFLTLASNQ-LVG 202 (968)
T ss_pred cccCc---cccCCCCEEECcCC-ccccc-CChHHhcCCCCCEEECccCc--cccc-CChhhhhCcCCCeeeccCCC-CcC
Confidence 21111 23678888888874 33321 22233457888888888754 2221 22223457888888887754 322
Q ss_pred HHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcC-CCCCCcccc-----ccc
Q 017279 227 VGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSG-VKNKPGIWE-----SMK 300 (374)
Q Consensus 227 ~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~-~~~~~~~~~-----~~~ 300 (374)
. +......+++|+.|++++| .++......+. .+++|++|++++|. ++......+.... ++......+ .+.
T Consensus 203 ~-~p~~l~~l~~L~~L~L~~n-~l~~~~p~~l~-~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 278 (968)
T PLN00113 203 Q-IPRELGQMKSLKWIYLGYN-NLSGEIPYEIG-GLTSLNHLDLVYNN-LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP 278 (968)
T ss_pred c-CChHHcCcCCccEEECcCC-ccCCcCChhHh-cCCCCCEEECcCce-eccccChhHhCCCCCCEEECcCCeeeccCch
Confidence 1 1222345678888888874 34322222333 47788888887774 3322222222211 000001111 112
Q ss_pred cccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCc
Q 017279 301 GRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCL 349 (374)
Q Consensus 301 ~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~ 349 (374)
.+..+++|++|++++| .++..... .+..+++|+.|++++|.
T Consensus 279 ~l~~l~~L~~L~Ls~n-~l~~~~p~-------~~~~l~~L~~L~l~~n~ 319 (968)
T PLN00113 279 SIFSLQKLISLDLSDN-SLSGEIPE-------LVIQLQNLEILHLFSNN 319 (968)
T ss_pred hHhhccCcCEEECcCC-eeccCCCh-------hHcCCCCCcEEECCCCc
Confidence 2556788888888874 34321111 23567889999998885
No 11
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.22 E-value=4.4e-10 Score=96.54 Aligned_cols=233 Identities=25% Similarity=0.322 Sum_probs=159.8
Q ss_pred HHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHH---HhCCCCCEEecCCCC--CCCHHHHH------HHHhcCCCCcEEe
Q 017279 96 LVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIA---NSCHDLQDLDLSKSF--KLSDRSLY------ALAHGCPNLTRLN 164 (374)
Q Consensus 96 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~--~~~~~~~~------~l~~~~~~L~~L~ 164 (374)
.+.........++.++++ .+.+.......+. ..-++|+..+++... ...++.+. .-...||+|++|+
T Consensus 21 ~v~~~~~~~~s~~~l~ls--gnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ld 98 (382)
T KOG1909|consen 21 DVEEELEPMDSLTKLDLS--GNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLD 98 (382)
T ss_pred hHHHHhcccCceEEEecc--CCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEee
Confidence 455566677889999999 5566655444444 345678888887641 22222222 2223579999999
Q ss_pred ecCCCCCCHH---HHHHHHhcCCCCcEEEcCCCccCccHHHHHHH------------HhcCCCCCEEeccCCCCCCH---
Q 017279 165 ISGCTSFSDH---ALAYLCGFCRKLKILNLCGCVKAATDYALQAI------------GRNCNQLQSLNLGWCEDVGD--- 226 (374)
Q Consensus 165 L~~~~~~~~~---~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l------------~~~~~~L~~L~l~~~~~~~~--- 226 (374)
|+. +-+.+. ++..+...+.+|++|.|.+|. +....-..+ ..+-+.|+.+...++. +.+
T Consensus 99 LSD-NA~G~~g~~~l~~ll~s~~~L~eL~L~N~G--lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr-len~ga 174 (382)
T KOG1909|consen 99 LSD-NAFGPKGIRGLEELLSSCTDLEELYLNNCG--LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR-LENGGA 174 (382)
T ss_pred ccc-cccCccchHHHHHHHHhccCHHHHhhhcCC--CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-cccccH
Confidence 997 455444 455566779999999999976 443332222 2245889999997743 333
Q ss_pred HHHHHHHhcCCCCCeeecCCCCCCCHHHHHHH---HhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCcccccccccc
Q 017279 227 VGVMNLAYGCPDLRSLDLCGCVCITDDSVIAL---ANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRY 303 (374)
Q Consensus 227 ~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l---~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~ 303 (374)
..+...++.+|.|+.+.+.. +.|..+++..+ +.+||+|+.|++.++. ++..+-..++.. ++
T Consensus 175 ~~~A~~~~~~~~leevr~~q-N~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~Laka--------------L~ 238 (382)
T KOG1909|consen 175 TALAEAFQSHPTLEEVRLSQ-NGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAKA--------------LS 238 (382)
T ss_pred HHHHHHHHhccccceEEEec-ccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHHH--------------hc
Confidence 33455566789999999998 46665555333 3469999999999986 777676666654 23
Q ss_pred CCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCcccccc
Q 017279 304 DEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSV 354 (374)
Q Consensus 304 ~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~~~ 354 (374)
.+++|++|+++.| .+.+.+..++++.+... .|+|+.|.+.||. +|-.
T Consensus 239 s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~--~p~L~vl~l~gNe-It~d 285 (382)
T KOG1909|consen 239 SWPHLRELNLGDC-LLENEGAIAFVDALKES--APSLEVLELAGNE-ITRD 285 (382)
T ss_pred ccchheeeccccc-ccccccHHHHHHHHhcc--CCCCceeccCcch-hHHH
Confidence 5689999999997 57777777777665543 8999999999995 6543
No 12
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.15 E-value=1e-10 Score=120.93 Aligned_cols=177 Identities=19% Similarity=0.122 Sum_probs=83.9
Q ss_pred ccCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCC
Q 017279 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP 158 (374)
Q Consensus 79 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 158 (374)
..+++|+++++..... .+ ....++|+.|+++ .+.+.......+ ..+++|++|+++++. +.......+. .++
T Consensus 118 ~~L~~L~Ls~n~l~~~--~p--~~~l~~L~~L~Ls--~n~~~~~~p~~~-~~l~~L~~L~L~~n~-l~~~~p~~~~-~l~ 188 (968)
T PLN00113 118 SSLRYLNLSNNNFTGS--IP--RGSIPNLETLDLS--NNMLSGEIPNDI-GSFSSLKVLDLGGNV-LVGKIPNSLT-NLT 188 (968)
T ss_pred CCCCEEECcCCccccc--cC--ccccCCCCEEECc--CCcccccCChHH-hcCCCCCEEECccCc-ccccCChhhh-hCc
Confidence 4578888876543211 10 1245677777777 344433222233 336777777777752 2222222222 356
Q ss_pred CCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCC
Q 017279 159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPD 238 (374)
Q Consensus 159 ~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 238 (374)
+|++|+++++. +... ++.....+++|++|+++++. +... +......+++|++|+++++. +... +......+++
T Consensus 189 ~L~~L~L~~n~-l~~~-~p~~l~~l~~L~~L~L~~n~--l~~~-~p~~l~~l~~L~~L~L~~n~-l~~~-~p~~l~~l~~ 261 (968)
T PLN00113 189 SLEFLTLASNQ-LVGQ-IPRELGQMKSLKWIYLGYNN--LSGE-IPYEIGGLTSLNHLDLVYNN-LTGP-IPSSLGNLKN 261 (968)
T ss_pred CCCeeeccCCC-CcCc-CChHHcCcCCccEEECcCCc--cCCc-CChhHhcCCCCCEEECcCce-eccc-cChhHhCCCC
Confidence 77777776642 2211 12223346667777666543 2211 11222345666666666543 2211 1112234556
Q ss_pred CCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCC
Q 017279 239 LRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYC 273 (374)
Q Consensus 239 L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~ 273 (374)
|+.|++++|. ++......+. .+++|+.|++++|
T Consensus 262 L~~L~L~~n~-l~~~~p~~l~-~l~~L~~L~Ls~n 294 (968)
T PLN00113 262 LQYLFLYQNK-LSGPIPPSIF-SLQKLISLDLSDN 294 (968)
T ss_pred CCEEECcCCe-eeccCchhHh-hccCcCEEECcCC
Confidence 6666666532 2211111222 2555666666555
No 13
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=1.4e-11 Score=108.44 Aligned_cols=222 Identities=23% Similarity=0.180 Sum_probs=142.8
Q ss_pred HHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHH
Q 017279 99 SLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAY 178 (374)
Q Consensus 99 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~ 178 (374)
.-...+.+|+.+.++ +..+.........+.|++++.|+++.+-......+..+++.+|+|+.|+|+.+ .+....-..
T Consensus 115 akQsn~kkL~~IsLd--n~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~ 191 (505)
T KOG3207|consen 115 AKQSNLKKLREISLD--NYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSN 191 (505)
T ss_pred HHhhhHHhhhheeec--CccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc-cccCCcccc
Confidence 334466778888888 55555444435556799999999999866677778888889999999999863 221111011
Q ss_pred HHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHH-HHHHHHhcCCCCCeeecCCCCCCCHHHHHH
Q 017279 179 LCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDV-GVMNLAYGCPDLRSLDLCGCVCITDDSVIA 257 (374)
Q Consensus 179 l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~ 257 (374)
....++.|+.|.++.|. ++...+..+...+|+|+.|.+..+..+... .-.. -+..|++|+|++++.++...+..
T Consensus 192 ~~~~l~~lK~L~l~~CG--ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~---i~~~L~~LdLs~N~li~~~~~~~ 266 (505)
T KOG3207|consen 192 TTLLLSHLKQLVLNSCG--LSWKDVQWILLTFPSLEVLYLEANEIILIKATSTK---ILQTLQELDLSNNNLIDFDQGYK 266 (505)
T ss_pred chhhhhhhheEEeccCC--CCHHHHHHHHHhCCcHHHhhhhcccccceecchhh---hhhHHhhccccCCcccccccccc
Confidence 11246889999999987 667777777778999999999875322211 1112 23578999999977766554444
Q ss_pred HHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCC
Q 017279 258 LANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTC 337 (374)
Q Consensus 258 l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~ 337 (374)
+. .+|+|+.|+++.|. +++-..... +.......+++|+.|++..++-.+...+.. ++..
T Consensus 267 ~~-~l~~L~~Lnls~tg-i~si~~~d~------------~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~-------l~~l 325 (505)
T KOG3207|consen 267 VG-TLPGLNQLNLSSTG-IASIAEPDV------------ESLDKTHTFPKLEYLNISENNIRDWRSLNH-------LRTL 325 (505)
T ss_pred cc-cccchhhhhccccC-cchhcCCCc------------cchhhhcccccceeeecccCccccccccch-------hhcc
Confidence 44 48899999888774 443211111 011112256899999998844333334433 3556
Q ss_pred CCCceEEecCCc
Q 017279 338 SGRHSLVMSGCL 349 (374)
Q Consensus 338 ~~L~~L~ls~C~ 349 (374)
++|+.|.+.+.+
T Consensus 326 ~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 326 ENLKHLRITLNY 337 (505)
T ss_pred chhhhhhccccc
Confidence 777777765443
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.08 E-value=3.5e-10 Score=117.79 Aligned_cols=47 Identities=17% Similarity=0.232 Sum_probs=35.2
Q ss_pred ccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCcccccccc
Q 017279 302 RYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVHC 356 (374)
Q Consensus 302 ~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~~~~~ 356 (374)
+..+++|+.|++++|+++..... .+..+++|+.+++++|.+++...+
T Consensus 865 i~~l~~L~~L~L~~C~~L~~l~~--------~~~~L~~L~~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 865 IEKFSNLSFLDMNGCNNLQRVSL--------NISKLKHLETVDFSDCGALTEASW 911 (1153)
T ss_pred HhcCCCCCEEECCCCCCcCccCc--------ccccccCCCeeecCCCcccccccC
Confidence 56788999999999888764211 235678889999999998876544
No 15
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.88 E-value=1.4e-08 Score=98.91 Aligned_cols=60 Identities=23% Similarity=0.282 Sum_probs=24.5
Q ss_pred CCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccC
Q 017279 159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGW 220 (374)
Q Consensus 159 ~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 220 (374)
+|++|++++...+...-...+...+|+|++|.+.+.. +..+.+..+..++|+|..|++++
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~--~~~~dF~~lc~sFpNL~sLDIS~ 182 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQ--FDNDDFSQLCASFPNLRSLDISG 182 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCce--ecchhHHHHhhccCccceeecCC
Confidence 4444444443333222233333334444444444422 23333444444444444444444
No 16
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.88 E-value=1.1e-08 Score=99.52 Aligned_cols=149 Identities=26% Similarity=0.293 Sum_probs=95.0
Q ss_pred CCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCC
Q 017279 132 HDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCN 211 (374)
Q Consensus 132 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~ 211 (374)
.+|++|+++|...+...-...+...+|.|++|.+.+ ..+....+..+...+|+|..||++++. +++ +..+ .+++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~-~~~~~~dF~~lc~sFpNL~sLDIS~Tn--I~n--l~GI-S~Lk 195 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISG-RQFDNDDFSQLCASFPNLRSLDISGTN--ISN--LSGI-SRLK 195 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecC-ceecchhHHHHhhccCccceeecCCCC--ccC--cHHH-hccc
Confidence 568888888766666666667777788888888877 455555577777778888888888754 322 2222 2577
Q ss_pred CCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHH-HHHHHHh---cCCCCceEecCCCCCCCHHHHHHHHhc
Q 017279 212 QLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDD-SVIALAN---GCPHLRSLGLYYCRNITDRAIYSLAQS 287 (374)
Q Consensus 212 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~-~l~~l~~---~~~~L~~L~l~~~~~i~~~~~~~l~~~ 287 (374)
+|+.|.+.+..-.+...+..++ .+.+|+.||++........ .+....+ .+|+|+.|+.++.+ ++++.++.+...
T Consensus 196 nLq~L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd-i~~~~le~ll~s 273 (699)
T KOG3665|consen 196 NLQVLSMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD-INEEILEELLNS 273 (699)
T ss_pred cHHHHhccCCCCCchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc-hhHHHHHHHHHh
Confidence 7888887765433335555665 4678888888874433322 1222222 36777777777664 777777766665
Q ss_pred C
Q 017279 288 G 288 (374)
Q Consensus 288 ~ 288 (374)
.
T Consensus 274 H 274 (699)
T KOG3665|consen 274 H 274 (699)
T ss_pred C
Confidence 3
No 17
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=8.6e-10 Score=97.43 Aligned_cols=193 Identities=19% Similarity=0.142 Sum_probs=109.7
Q ss_pred CCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcC
Q 017279 131 CHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNC 210 (374)
Q Consensus 131 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~ 210 (374)
..+|+.+.+.++ .+...+.....+.|++++.|+|+.+-.-.-..+..++..+|+|+.|+++........+.. .....
T Consensus 120 ~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~--~~~~l 196 (505)
T KOG3207|consen 120 LKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN--TTLLL 196 (505)
T ss_pred HHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcccc--chhhh
Confidence 456667777664 333333334445577777777776322223345566667777777777653321111111 11245
Q ss_pred CCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCC
Q 017279 211 NQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVK 290 (374)
Q Consensus 211 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~ 290 (374)
++|+.|.++.|. ++...+..++..||+|+.|.+.++..+.-..... .....|+.|+|+++..++.+......
T Consensus 197 ~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~--~i~~~L~~LdLs~N~li~~~~~~~~~----- 268 (505)
T KOG3207|consen 197 SHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILIKATST--KILQTLQELDLSNNNLIDFDQGYKVG----- 268 (505)
T ss_pred hhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccceecchh--hhhhHHhhccccCCcccccccccccc-----
Confidence 677777777764 6666777777777777777777753332111110 11345777777777666654444333
Q ss_pred CCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCc
Q 017279 291 NKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCL 349 (374)
Q Consensus 291 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~ 349 (374)
.+|+|+.|+++.| .+.+...-.. .+.-....+|+|+.|+++..+
T Consensus 269 -------------~l~~L~~Lnls~t-gi~si~~~d~-~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 269 -------------TLPGLNQLNLSST-GIASIAEPDV-ESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred -------------cccchhhhhcccc-CcchhcCCCc-cchhhhcccccceeeecccCc
Confidence 4589999999874 4543221111 011123568999999998764
No 18
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.75 E-value=1.7e-09 Score=98.94 Aligned_cols=157 Identities=17% Similarity=0.153 Sum_probs=75.6
Q ss_pred cCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCC---CHHHHHHH
Q 017279 182 FCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCI---TDDSVIAL 258 (374)
Q Consensus 182 ~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l---~~~~l~~l 258 (374)
.+.++++|+|.... +.... ....-.+..|+.|+++.+. +.......+ ..+++|++|+++++ .+ .+..+..
T Consensus 267 ~l~kme~l~L~~N~--l~~vn-~g~lfgLt~L~~L~lS~Na-I~rih~d~W-sftqkL~~LdLs~N-~i~~l~~~sf~~- 339 (873)
T KOG4194|consen 267 GLEKMEHLNLETNR--LQAVN-EGWLFGLTSLEQLDLSYNA-IQRIHIDSW-SFTQKLKELDLSSN-RITRLDEGSFRV- 339 (873)
T ss_pred eecccceeecccch--hhhhh-cccccccchhhhhccchhh-hheeecchh-hhcccceeEecccc-ccccCChhHHHH-
Confidence 35567777776532 21111 1112235667777776532 222222222 13577777777763 33 2333332
Q ss_pred HhcCCCCceEecCCCCCCC---H---HHHHHHHhcCCCCCCccccccc---cccCCCCCcEEecCCCCCCCHHHHHHHHh
Q 017279 259 ANGCPHLRSLGLYYCRNIT---D---RAIYSLAQSGVKNKPGIWESMK---GRYDEEGLQSLNISQCTALTPPAVQALCD 329 (374)
Q Consensus 259 ~~~~~~L~~L~l~~~~~i~---~---~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~l~~~~l~~l~~ 329 (374)
+..|+.|+++++. ++ + .++..+....+..-+..|..=. .+.++++|+.|.+.| +++....-+++
T Consensus 340 ---L~~Le~LnLs~Ns-i~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAf-- 412 (873)
T KOG4194|consen 340 ---LSQLEELNLSHNS-IDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAF-- 412 (873)
T ss_pred ---HHHhhhhcccccc-hHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecchhhh--
Confidence 3346666666553 22 2 2222232222222222222111 145567788888877 55654333332
Q ss_pred hCCCccCCCCCceEEecCCccccccccee
Q 017279 330 TFPALHTCSGRHSLVMSGCLNLTSVHCVC 358 (374)
Q Consensus 330 ~~~~l~~~~~L~~L~ls~C~~l~~~~~~~ 358 (374)
..++.|++|++.+.. +.+++.+.
T Consensus 413 -----sgl~~LE~LdL~~Na-iaSIq~nA 435 (873)
T KOG4194|consen 413 -----SGLEALEHLDLGDNA-IASIQPNA 435 (873)
T ss_pred -----ccCcccceecCCCCc-ceeecccc
Confidence 456677888877764 44444443
No 19
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.74 E-value=6.9e-09 Score=64.22 Aligned_cols=37 Identities=32% Similarity=0.527 Sum_probs=32.5
Q ss_pred cCCCCHHHHHHHhcCCCccchhhhcccchhHHHhhhc
Q 017279 43 WKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICL 79 (374)
Q Consensus 43 ~~~Lp~eil~~If~~L~~~~l~~~~~vc~~w~~~~~~ 79 (374)
|..||+|++.+||++++.+|+.++++|||+|++++..
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~ 37 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIAND 37 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTC
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCC
Confidence 6789999999999999999999999999999998743
No 20
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.69 E-value=6.6e-08 Score=101.03 Aligned_cols=43 Identities=28% Similarity=0.434 Sum_probs=31.1
Q ss_pred ccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCccccc
Q 017279 302 RYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTS 353 (374)
Q Consensus 302 ~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~~ 353 (374)
+..+++|+.|+|++|..+.. +|....+++|+.|++++|.++..
T Consensus 798 i~~L~~L~~L~Ls~C~~L~~---------LP~~~~L~sL~~L~Ls~c~~L~~ 840 (1153)
T PLN03210 798 IQNLHKLEHLEIENCINLET---------LPTGINLESLESLDLSGCSRLRT 840 (1153)
T ss_pred hhCCCCCCEEECCCCCCcCe---------eCCCCCccccCEEECCCCCcccc
Confidence 56778899999988876652 34333577888888888877654
No 21
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=8.7e-08 Score=80.98 Aligned_cols=146 Identities=18% Similarity=0.142 Sum_probs=99.5
Q ss_pred HHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHH
Q 017279 122 NAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDY 201 (374)
Q Consensus 122 ~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~ 201 (374)
..+..+...++.++.+++.++..-.++.+..+.+++|.|+.|+++.+ .+.. .+..+.....+|+.|-|.+.. ....
T Consensus 61 gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N-~L~s-~I~~lp~p~~nl~~lVLNgT~--L~w~ 136 (418)
T KOG2982|consen 61 GDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCN-SLSS-DIKSLPLPLKNLRVLVLNGTG--LSWT 136 (418)
T ss_pred hhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCC-cCCC-ccccCcccccceEEEEEcCCC--CChh
Confidence 44556667788899999998755566677888888999999999863 3322 122222235689999998854 6667
Q ss_pred HHHHHHhcCCCCCEEeccCCC----CCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCC
Q 017279 202 ALQAIGRNCNQLQSLNLGWCE----DVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCR 274 (374)
Q Consensus 202 ~~~~l~~~~~~L~~L~l~~~~----~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~ 274 (374)
....+....|.++.|+++.+. .+++..... .-|.+++|.+.+|...-+..+..+.+.+|++..+-+..|+
T Consensus 137 ~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~---~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P 210 (418)
T KOG2982|consen 137 QSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIED---WSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP 210 (418)
T ss_pred hhhhhhhcchhhhhhhhccchhhhhccccccccc---cchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc
Confidence 777777788888988887642 122222222 2256777777777655555666677778888888888776
No 22
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.52 E-value=2.3e-06 Score=71.65 Aligned_cols=36 Identities=22% Similarity=0.166 Sum_probs=15.3
Q ss_pred CCCCeeecCCCCCCCHHHHHHHH----hcCCCCceEecCCC
Q 017279 237 PDLRSLDLCGCVCITDDSVIALA----NGCPHLRSLGLYYC 273 (374)
Q Consensus 237 ~~L~~L~l~~~~~l~~~~l~~l~----~~~~~L~~L~l~~~ 273 (374)
.+|+.+.+.. +.|.++++..+. ..+.+|+.|++.++
T Consensus 185 ~~lk~vki~q-NgIrpegv~~L~~~gl~y~~~LevLDlqDN 224 (388)
T COG5238 185 ENLKEVKIQQ-NGIRPEGVTMLAFLGLFYSHSLEVLDLQDN 224 (388)
T ss_pred cCceeEEeee-cCcCcchhHHHHHHHHHHhCcceeeecccc
Confidence 3455555554 344444332222 12444555555444
No 23
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.47 E-value=5.9e-09 Score=96.39 Aligned_cols=127 Identities=20% Similarity=0.177 Sum_probs=63.5
Q ss_pred cCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHH----HHHHH
Q 017279 209 NCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDR----AIYSL 284 (374)
Q Consensus 209 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~----~~~~l 284 (374)
..++|+.|+++++. ++.-.+ -...+.+|++|+++.+ .++ .+..-.-.+++|+.|.+.++. ++.+ ++-.+
T Consensus 243 ~l~~LrrLNLS~N~-iteL~~--~~~~W~~lEtLNlSrN-QLt--~LP~avcKL~kL~kLy~n~Nk-L~FeGiPSGIGKL 315 (1255)
T KOG0444|consen 243 KLRNLRRLNLSGNK-ITELNM--TEGEWENLETLNLSRN-QLT--VLPDAVCKLTKLTKLYANNNK-LTFEGIPSGIGKL 315 (1255)
T ss_pred hhhhhheeccCcCc-eeeeec--cHHHHhhhhhhccccc-hhc--cchHHHhhhHHHHHHHhccCc-ccccCCccchhhh
Confidence 35666666666632 333111 1122456666666663 332 121111125666666655543 3322 22222
Q ss_pred HhcC-CCCCCccccc-cccccCCCCCcEEecCCCCCCCHHHHHHHHhhCC-CccCCCCCceEEecCCcccc
Q 017279 285 AQSG-VKNKPGIWES-MKGRYDEEGLQSLNISQCTALTPPAVQALCDTFP-ALHTCSGRHSLVMSGCLNLT 352 (374)
Q Consensus 285 ~~~~-~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~-~l~~~~~L~~L~ls~C~~l~ 352 (374)
.... +....-..+. +.+++.|..|+.|.++.+.-++ +| .++.+|.|+.||+...+++.
T Consensus 316 ~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiT----------LPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 316 IQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLIT----------LPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred hhhHHHHhhccccccCchhhhhhHHHHHhcccccceee----------chhhhhhcCCcceeeccCCcCcc
Confidence 2211 0000111122 2347788888888887754343 22 23567888999999998873
No 24
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.46 E-value=4e-08 Score=90.25 Aligned_cols=240 Identities=22% Similarity=0.210 Sum_probs=122.6
Q ss_pred ceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCc
Q 017279 82 THLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLT 161 (374)
Q Consensus 82 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 161 (374)
+.|++++..... .-...+...++|+.+.+. .+.++. +..+......|+.|+|..+ .++...-+.+.. .|.|+
T Consensus 81 ~~LdlsnNkl~~--id~~~f~nl~nLq~v~l~--~N~Lt~--IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~-l~alr 152 (873)
T KOG4194|consen 81 QTLDLSNNKLSH--IDFEFFYNLPNLQEVNLN--KNELTR--IPRFGHESGHLEKLDLRHN-LISSVTSEELSA-LPALR 152 (873)
T ss_pred eeeecccccccc--CcHHHHhcCCcceeeeec--cchhhh--cccccccccceeEEeeecc-ccccccHHHHHh-Hhhhh
Confidence 456666543321 222344567777777776 333322 1111122345777777765 333322333322 57777
Q ss_pred EEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCe
Q 017279 162 RLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRS 241 (374)
Q Consensus 162 ~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 241 (374)
+|+|+. +.+.....+.+. .-+++++|+|++.. +++-....+. .+.+|..|.++.+. ++.-. ...++.+|+|+.
T Consensus 153 slDLSr-N~is~i~~~sfp-~~~ni~~L~La~N~--It~l~~~~F~-~lnsL~tlkLsrNr-ittLp-~r~Fk~L~~L~~ 225 (873)
T KOG4194|consen 153 SLDLSR-NLISEIPKPSFP-AKVNIKKLNLASNR--ITTLETGHFD-SLNSLLTLKLSRNR-ITTLP-QRSFKRLPKLES 225 (873)
T ss_pred hhhhhh-chhhcccCCCCC-CCCCceEEeecccc--cccccccccc-ccchheeeecccCc-ccccC-HHHhhhcchhhh
Confidence 777775 233332222111 23567888887633 4443333333 34577777777643 44322 223445778888
Q ss_pred eecCCCCCCCHHHHHHHHhcCCCCceEecCCCC--CCCHHHHHHHHhcCCCCCCcccccc-----ccccCCCCCcEEecC
Q 017279 242 LDLCGCVCITDDSVIALANGCPHLRSLGLYYCR--NITDRAIYSLAQSGVKNKPGIWESM-----KGRYDEEGLQSLNIS 314 (374)
Q Consensus 242 L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~--~i~~~~~~~l~~~~~~~~~~~~~~~-----~~~~~~~~L~~L~l~ 314 (374)
|++..+ .+.-..... +++++.|+.|.+..+. .++|..+..+.+. +......+.+ ..+.+++.|+.|+++
T Consensus 226 LdLnrN-~irive~lt-FqgL~Sl~nlklqrN~I~kL~DG~Fy~l~km--e~l~L~~N~l~~vn~g~lfgLt~L~~L~lS 301 (873)
T KOG4194|consen 226 LDLNRN-RIRIVEGLT-FQGLPSLQNLKLQRNDISKLDDGAFYGLEKM--EHLNLETNRLQAVNEGWLFGLTSLEQLDLS 301 (873)
T ss_pred hhcccc-ceeeehhhh-hcCchhhhhhhhhhcCcccccCcceeeeccc--ceeecccchhhhhhcccccccchhhhhccc
Confidence 888773 443221222 2357777777776553 1223222222221 1111222222 227788888988888
Q ss_pred CCCCCCHHHHHHHHhhCCCccCCCCCceEEecCC
Q 017279 315 QCTALTPPAVQALCDTFPALHTCSGRHSLVMSGC 348 (374)
Q Consensus 315 ~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C 348 (374)
. +.+....+ .....|++|+.|+++..
T Consensus 302 ~-NaI~rih~-------d~WsftqkL~~LdLs~N 327 (873)
T KOG4194|consen 302 Y-NAIQRIHI-------DSWSFTQKLKELDLSSN 327 (873)
T ss_pred h-hhhheeec-------chhhhcccceeEecccc
Confidence 7 34432111 12357999999999976
No 25
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.28 E-value=7.7e-08 Score=89.22 Aligned_cols=105 Identities=22% Similarity=0.212 Sum_probs=54.0
Q ss_pred cCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCC--HHHHHHHHhc---CC-CCCCccccccccccCCCCC
Q 017279 235 GCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNIT--DRAIYSLAQS---GV-KNKPGIWESMKGRYDEEGL 308 (374)
Q Consensus 235 ~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~--~~~~~~l~~~---~~-~~~~~~~~~~~~~~~~~~L 308 (374)
.+++|+.|++++ +.++.-.. -.....+|++|+++.+. ++ ++.+-.+.+. -. .+...+-..+.||+++.+|
T Consensus 243 ~l~~LrrLNLS~-N~iteL~~--~~~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~L 318 (1255)
T KOG0444|consen 243 KLRNLRRLNLSG-NKITELNM--TEGEWENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQL 318 (1255)
T ss_pred hhhhhheeccCc-Cceeeeec--cHHHHhhhhhhccccch-hccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhh
Confidence 346666666666 34442211 11124566666666653 22 2222222221 11 1222333344557777777
Q ss_pred cEEecCCCCCCCHHHHHHHHhhCC-CccCCCCCceEEecCCccccc
Q 017279 309 QSLNISQCTALTPPAVQALCDTFP-ALHTCSGRHSLVMSGCLNLTS 353 (374)
Q Consensus 309 ~~L~l~~~~~l~~~~l~~l~~~~~-~l~~~~~L~~L~ls~C~~l~~ 353 (374)
+++..++ +.+. ..| .+..|++|+.|.++...-+|-
T Consensus 319 evf~aan-N~LE---------lVPEglcRC~kL~kL~L~~NrLiTL 354 (1255)
T KOG0444|consen 319 EVFHAAN-NKLE---------LVPEGLCRCVKLQKLKLDHNRLITL 354 (1255)
T ss_pred HHHHhhc-cccc---------cCchhhhhhHHHHHhcccccceeec
Confidence 7777766 3332 122 235799999999988776653
No 26
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.25 E-value=7.9e-05 Score=62.71 Aligned_cols=20 Identities=20% Similarity=0.286 Sum_probs=9.1
Q ss_pred CCceEEecCCcccccccceec
Q 017279 339 GRHSLVMSGCLNLTSVHCVCA 359 (374)
Q Consensus 339 ~L~~L~ls~C~~l~~~~~~~~ 359 (374)
.|+.|.+.+|- +.+.+..++
T Consensus 243 ~lrEL~lnDCl-ls~~G~~~v 262 (388)
T COG5238 243 LLRELRLNDCL-LSNEGVKSV 262 (388)
T ss_pred hhhhccccchh-hccccHHHH
Confidence 34555555552 444444443
No 27
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=4.9e-07 Score=76.56 Aligned_cols=179 Identities=20% Similarity=0.145 Sum_probs=86.4
Q ss_pred cccccccchHHHHHHhhcCCCCcEEEeeCCCCCCCh-HHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEe
Q 017279 86 LSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLED-NAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLN 164 (374)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~ 164 (374)
+.++.......+..+...+++++.+++. .+.+++ ..+..+.+.+|.|+.|+++.+..-++ +..+.....+|+.|.
T Consensus 52 ln~~~id~~gd~~~~~~~~~~v~elDL~--~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~--I~~lp~p~~nl~~lV 127 (418)
T KOG2982|consen 52 LNGSIIDNEGDVMLFGSSVTDVKELDLT--GNLISDWSEIGAILEQLPALTTLNLSCNSLSSD--IKSLPLPLKNLRVLV 127 (418)
T ss_pred ecCCCCCcchhHHHHHHHhhhhhhhhcc--cchhccHHHHHHHHhcCccceEeeccCCcCCCc--cccCcccccceEEEE
Confidence 3333333334444555566666677766 444443 33455556667777777766532222 112211245677777
Q ss_pred ecCCCCCCHHHHHHHHhcCCCCcEEEcCCCcc---CccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCe
Q 017279 165 ISGCTSFSDHALAYLCGFCRKLKILNLCGCVK---AATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRS 241 (374)
Q Consensus 165 L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~---~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 241 (374)
|.+ +.++-.....+...+|.+++|.++.... .+.++.. ....+.+.+|++..|..........+.+.+|++..
T Consensus 128 LNg-T~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~---e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~s 203 (418)
T KOG2982|consen 128 LNG-TGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCI---EDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNS 203 (418)
T ss_pred EcC-CCCChhhhhhhhhcchhhhhhhhccchhhhhccccccc---cccchhhhhhhcCCcHHHHHHHHHhHHhhcccchh
Confidence 766 4555555555556666666666654210 0111111 11234555666655432222233344445666666
Q ss_pred eecCCCCCCCHHHHHHHHhcCCCCceEecCCC
Q 017279 242 LDLCGCVCITDDSVIALANGCPHLRSLGLYYC 273 (374)
Q Consensus 242 L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~ 273 (374)
+-+..|+ +.+..-..-.+..|.+..|+++..
T Consensus 204 v~v~e~P-lK~~s~ek~se~~p~~~~LnL~~~ 234 (418)
T KOG2982|consen 204 VFVCEGP-LKTESSEKGSEPFPSLSCLNLGAN 234 (418)
T ss_pred eeeecCc-ccchhhcccCCCCCcchhhhhccc
Confidence 6666543 322222222233455555555544
No 28
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.23 E-value=3.1e-07 Score=57.15 Aligned_cols=37 Identities=32% Similarity=0.503 Sum_probs=31.5
Q ss_pred ccCCCCHHHHHHHhcCCCccchhhhcccchhHHHhhh
Q 017279 42 EWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAIC 78 (374)
Q Consensus 42 ~~~~Lp~eil~~If~~L~~~~l~~~~~vc~~w~~~~~ 78 (374)
+|.+||+|++.+||++++..++.++++||++|++++.
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~ 38 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVD 38 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHT
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHc
Confidence 5778999999999999999999999999999998764
No 29
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.15 E-value=1.6e-06 Score=83.93 Aligned_cols=124 Identities=19% Similarity=0.185 Sum_probs=66.7
Q ss_pred CCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCC--CCCCHHHHHHHHhcCCCCceEecCCCCCCCH--HHHHHHHhcC
Q 017279 213 LQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGC--VCITDDSVIALANGCPHLRSLGLYYCRNITD--RAIYSLAQSG 288 (374)
Q Consensus 213 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~--~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~--~~~~~l~~~~ 288 (374)
|+.|.+.+ ..+++..+..+. ++++||.|+++++ ..+.+..+ +.++.|+.|+++++. ++. +.+..+....
T Consensus 361 Lq~Lylan-N~Ltd~c~p~l~-~~~hLKVLhLsyNrL~~fpas~~----~kle~LeeL~LSGNk-L~~Lp~tva~~~~L~ 433 (1081)
T KOG0618|consen 361 LQELYLAN-NHLTDSCFPVLV-NFKHLKVLHLSYNRLNSFPASKL----RKLEELEELNLSGNK-LTTLPDTVANLGRLH 433 (1081)
T ss_pred HHHHHHhc-Ccccccchhhhc-cccceeeeeecccccccCCHHHH----hchHHhHHHhcccch-hhhhhHHHHhhhhhH
Confidence 33344443 234554444443 4667777777774 12222222 235567777777664 321 1111111110
Q ss_pred -CCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCccc
Q 017279 289 -VKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNL 351 (374)
Q Consensus 289 -~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l 351 (374)
..-..-....+.++..++.|+.+|++. ++++...+.... | -|+|+.||++|...+
T Consensus 434 tL~ahsN~l~~fPe~~~l~qL~~lDlS~-N~L~~~~l~~~~---p----~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 434 TLRAHSNQLLSFPELAQLPQLKVLDLSC-NNLSEVTLPEAL---P----SPNLKYLDLSGNTRL 489 (1081)
T ss_pred HHhhcCCceeechhhhhcCcceEEeccc-chhhhhhhhhhC---C----CcccceeeccCCccc
Confidence 001111122334566789999999986 788876665442 2 289999999999853
No 30
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=6.1e-06 Score=66.20 Aligned_cols=89 Identities=26% Similarity=0.395 Sum_probs=71.5
Q ss_pred CcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCC
Q 017279 186 LKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHL 265 (374)
Q Consensus 186 L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L 265 (374)
++.++-+++. +...++..+. .++.++.|.+.+|..+.|..+..+....|+|+.|++++|+.||+.++..+.. +++|
T Consensus 103 IeaVDAsds~--I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~-lknL 178 (221)
T KOG3864|consen 103 IEAVDASDSS--IMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK-LKNL 178 (221)
T ss_pred EEEEecCCch--HHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH-hhhh
Confidence 5666666644 6667777765 5888899999988888898888888778899999999999999998888875 8899
Q ss_pred ceEecCCCCCCCH
Q 017279 266 RSLGLYYCRNITD 278 (374)
Q Consensus 266 ~~L~l~~~~~i~~ 278 (374)
+.|.+.+-+.+.+
T Consensus 179 r~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 179 RRLHLYDLPYVAN 191 (221)
T ss_pred HHHHhcCchhhhc
Confidence 9998887765554
No 31
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=5.2e-06 Score=66.59 Aligned_cols=89 Identities=21% Similarity=0.326 Sum_probs=75.8
Q ss_pred CCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCC
Q 017279 213 LQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNK 292 (374)
Q Consensus 213 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~ 292 (374)
++.++-+++ .+..+++..+. .++.++.|.+.+|..+.+.++..+....|+|+.|++++|+.|++.++..+.+.
T Consensus 103 IeaVDAsds-~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~l----- 175 (221)
T KOG3864|consen 103 IEAVDASDS-SIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKL----- 175 (221)
T ss_pred EEEEecCCc-hHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHh-----
Confidence 555666663 46777777764 68999999999999999999999998899999999999999999999999877
Q ss_pred CccccccccccCCCCCcEEecCCCCCCCH
Q 017279 293 PGIWESMKGRYDEEGLQSLNISQCTALTP 321 (374)
Q Consensus 293 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 321 (374)
++|+.|.+.+-..+.+
T Consensus 176 -------------knLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 176 -------------KNLRRLHLYDLPYVAN 191 (221)
T ss_pred -------------hhhHHHHhcCchhhhc
Confidence 8999999988665554
No 32
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=97.94 E-value=4e-06 Score=50.02 Aligned_cols=33 Identities=30% Similarity=0.454 Sum_probs=30.9
Q ss_pred CCHHHHHHHhcCCCccchhhhcccchhHHHhhh
Q 017279 46 IPMELLLRILSLVDEPTVIVASGVCSGWRDAIC 78 (374)
Q Consensus 46 Lp~eil~~If~~L~~~~l~~~~~vc~~w~~~~~ 78 (374)
||+|++..||++++..++.++++||++|+.++.
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~ 33 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLID 33 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 799999999999999999999999999998764
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.92 E-value=1.1e-06 Score=70.58 Aligned_cols=59 Identities=27% Similarity=0.347 Sum_probs=15.7
Q ss_pred cCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCC
Q 017279 209 NCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYC 273 (374)
Q Consensus 209 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~ 273 (374)
.+.+|+.|+++++. +.. +.. ...+++|++|++++ +.++... ..+...+|+|+.|+++++
T Consensus 40 ~l~~L~~L~Ls~N~-I~~--l~~-l~~L~~L~~L~L~~-N~I~~i~-~~l~~~lp~L~~L~L~~N 98 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQ-ITK--LEG-LPGLPRLKTLDLSN-NRISSIS-EGLDKNLPNLQELYLSNN 98 (175)
T ss_dssp T-TT--EEE-TTS---S----TT-----TT--EEE--S-S---S-C-HHHHHH-TT--EEE-TTS
T ss_pred hhcCCCEEECCCCC-Ccc--ccC-ccChhhhhhcccCC-CCCCccc-cchHHhCCcCCEEECcCC
Confidence 34555555555533 222 111 12345566666665 3343211 112223566666666554
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.89 E-value=3.6e-06 Score=67.64 Aligned_cols=131 Identities=21% Similarity=0.237 Sum_probs=46.0
Q ss_pred CCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcC
Q 017279 131 CHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNC 210 (374)
Q Consensus 131 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~ 210 (374)
+..+++|++.++ .++. ++.+...+.+|+.|+++++ .+... .. ...++.|+.|++++.. +..-. ..+...+
T Consensus 18 ~~~~~~L~L~~n-~I~~--Ie~L~~~l~~L~~L~Ls~N-~I~~l--~~-l~~L~~L~~L~L~~N~--I~~i~-~~l~~~l 87 (175)
T PF14580_consen 18 PVKLRELNLRGN-QIST--IENLGATLDKLEVLDLSNN-QITKL--EG-LPGLPRLKTLDLSNNR--ISSIS-EGLDKNL 87 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS---S----TT-----TT--EEE--SS-----S-C-HHHHHH-
T ss_pred cccccccccccc-cccc--ccchhhhhcCCCEEECCCC-CCccc--cC-ccChhhhhhcccCCCC--CCccc-cchHHhC
Confidence 345778888875 3332 3344434678888888874 44331 11 1237888999888743 33211 2233458
Q ss_pred CCCCEEeccCCCCCCHH-HHHHHHhcCCCCCeeecCCCCCCCHH--HHHHHHhcCCCCceEecCCCC
Q 017279 211 NQLQSLNLGWCEDVGDV-GVMNLAYGCPDLRSLDLCGCVCITDD--SVIALANGCPHLRSLGLYYCR 274 (374)
Q Consensus 211 ~~L~~L~l~~~~~~~~~-~~~~l~~~~~~L~~L~l~~~~~l~~~--~l~~l~~~~~~L~~L~l~~~~ 274 (374)
|+|++|.++++. +.+. .+.. ...+|+|+.|++.+++ ++.. --..+...+|+|+.|+-....
T Consensus 88 p~L~~L~L~~N~-I~~l~~l~~-L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 88 PNLQELYLSNNK-ISDLNELEP-LSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp TT--EEE-TTS----SCCCCGG-GGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred CcCCEEECcCCc-CCChHHhHH-HHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEEcc
Confidence 889999988753 3331 1222 3468999999999854 4321 223455568999999876543
No 35
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.66 E-value=1e-05 Score=71.39 Aligned_cols=63 Identities=19% Similarity=0.154 Sum_probs=38.9
Q ss_pred ccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCcccccccceecCccccccCCCCCC
Q 017279 302 RYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVHCVCAGQSHRTASSIPHP 372 (374)
Q Consensus 302 ~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~~~~~~~~~~~~~~~~~~~~~ 372 (374)
+.++.+|+.|++++ ++++-....+ ......|..|.+-+.+---+=++.+...=+|..+.+-+|
T Consensus 318 f~~ls~L~tL~L~~-N~it~~~~~a-------F~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~ 380 (498)
T KOG4237|consen 318 FQGLSGLKTLSLYD-NQITTVAPGA-------FQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNP 380 (498)
T ss_pred hhccccceeeeecC-CeeEEEeccc-------ccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCC
Confidence 45668888899988 5665322211 134456778888777766665666665555555555454
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.64 E-value=2.6e-05 Score=66.44 Aligned_cols=40 Identities=13% Similarity=0.177 Sum_probs=22.8
Q ss_pred cCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCc
Q 017279 303 YDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCL 349 (374)
Q Consensus 303 ~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~ 349 (374)
.++-+|..|++++ +++.. ++++ ..++++|-|+.+.+.+.+
T Consensus 371 ~KLYSLvnLDl~~-N~Ie~--ldeV----~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 371 RKLYSLVNLDLSS-NQIEE--LDEV----NHIGNLPCLETLRLTGNP 410 (490)
T ss_pred Hhhhhheeccccc-cchhh--HHHh----cccccccHHHHHhhcCCC
Confidence 3446777777777 34432 1221 234566777777776665
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.50 E-value=0.00023 Score=71.76 Aligned_cols=213 Identities=19% Similarity=0.115 Sum_probs=108.3
Q ss_pred CCCCCEEecCCCCC-CCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhc
Q 017279 131 CHDLQDLDLSKSFK-LSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRN 209 (374)
Q Consensus 131 ~~~L~~L~l~~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~ 209 (374)
++.|++|-+..+.. +.. ........+|.|+.|++++|.... .++...+.+-+|++|+++++. + ..++.-..+
T Consensus 544 ~~~L~tLll~~n~~~l~~-is~~ff~~m~~LrVLDLs~~~~l~--~LP~~I~~Li~LryL~L~~t~--I--~~LP~~l~~ 616 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLE-ISGEFFRSLPLLRVLDLSGNSSLS--KLPSSIGELVHLRYLDLSDTG--I--SHLPSGLGN 616 (889)
T ss_pred CCccceEEEeecchhhhh-cCHHHHhhCcceEEEECCCCCccC--cCChHHhhhhhhhcccccCCC--c--cccchHHHH
Confidence 56677777776532 111 111223347888888888654322 244444556778888888743 2 244444445
Q ss_pred CCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCC-CCCHHHHHHHHhcCCCCceEecCCCCC---CCHHHHHHHH
Q 017279 210 CNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCV-CITDDSVIALANGCPHLRSLGLYYCRN---ITDRAIYSLA 285 (374)
Q Consensus 210 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~-~l~~~~l~~l~~~~~~L~~L~l~~~~~---i~~~~~~~l~ 285 (374)
+..|.+|++........ +..+...+++|++|.+.... ..+...+..+ ..+.+|+.+.+..... ..-..+..+.
T Consensus 617 Lk~L~~Lnl~~~~~l~~--~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el-~~Le~L~~ls~~~~s~~~~e~l~~~~~L~ 693 (889)
T KOG4658|consen 617 LKKLIYLNLEVTGRLES--IPGILLELQSLRVLRLPRSALSNDKLLLKEL-ENLEHLENLSITISSVLLLEDLLGMTRLR 693 (889)
T ss_pred HHhhheecccccccccc--ccchhhhcccccEEEeeccccccchhhHHhh-hcccchhhheeecchhHhHhhhhhhHHHH
Confidence 66788888876443222 13344456788888887743 2222222333 2355555555533321 0001111222
Q ss_pred hcCCCCC--Ccc-ccccccccCCCCCcEEecCCCCCCCHHH--------------HHHH-H------hhCCCccCCCCCc
Q 017279 286 QSGVKNK--PGI-WESMKGRYDEEGLQSLNISQCTALTPPA--------------VQAL-C------DTFPALHTCSGRH 341 (374)
Q Consensus 286 ~~~~~~~--~~~-~~~~~~~~~~~~L~~L~l~~~~~l~~~~--------------l~~l-~------~~~~~l~~~~~L~ 341 (374)
....... ... ......+..+.+|+.|.+.+|...+... +..+ . +...+....|+|+
T Consensus 694 ~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~ 773 (889)
T KOG4658|consen 694 SLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLT 773 (889)
T ss_pred HHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCccc
Confidence 1111111 011 1111226678999999998876532111 1111 1 1111224678899
Q ss_pred eEEecCCccccc
Q 017279 342 SLVMSGCLNLTS 353 (374)
Q Consensus 342 ~L~ls~C~~l~~ 353 (374)
.|.+.+|..+++
T Consensus 774 ~l~l~~~~~~e~ 785 (889)
T KOG4658|consen 774 SLSLVSCRLLED 785 (889)
T ss_pred EEEEeccccccc
Confidence 999999987754
No 38
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.30 E-value=0.00019 Score=70.98 Aligned_cols=111 Identities=23% Similarity=0.189 Sum_probs=53.6
Q ss_pred cCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCC
Q 017279 80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPN 159 (374)
Q Consensus 80 ~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 159 (374)
.-..|+++..... .....+ .++++.|.+. .+.++. +....++|++|+++++ .++. +. ...++
T Consensus 202 ~~~~LdLs~~~Lt--sLP~~l---~~~L~~L~L~--~N~Lt~-----LP~lp~~Lk~LdLs~N-~Lts--LP---~lp~s 263 (788)
T PRK15387 202 GNAVLNVGESGLT--TLPDCL---PAHITTLVIP--DNNLTS-----LPALPPELRTLEVSGN-QLTS--LP---VLPPG 263 (788)
T ss_pred CCcEEEcCCCCCC--cCCcch---hcCCCEEEcc--CCcCCC-----CCCCCCCCcEEEecCC-ccCc--cc---Ccccc
Confidence 3456776665332 111111 1367777777 344432 1123567888888775 3332 11 12356
Q ss_pred CcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCC
Q 017279 160 LTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWC 221 (374)
Q Consensus 160 L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 221 (374)
|++|+++++ .+.. ++. ..++|+.|+++++. +.. + ....++|+.|+++++
T Consensus 264 L~~L~Ls~N-~L~~--Lp~---lp~~L~~L~Ls~N~--Lt~--L---P~~p~~L~~LdLS~N 312 (788)
T PRK15387 264 LLELSIFSN-PLTH--LPA---LPSGLCKLWIFGNQ--LTS--L---PVLPPGLQELSVSDN 312 (788)
T ss_pred cceeeccCC-chhh--hhh---chhhcCEEECcCCc--ccc--c---cccccccceeECCCC
Confidence 777777653 2321 221 13456666666533 221 1 112356666666654
No 39
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.25 E-value=0.0004 Score=68.77 Aligned_cols=35 Identities=43% Similarity=0.545 Sum_probs=20.7
Q ss_pred CCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCccccc
Q 017279 306 EGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTS 353 (374)
Q Consensus 306 ~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~~ 353 (374)
.+|+.|++++ +.++ .+|.+ .++|+.|+++++. ++.
T Consensus 382 ~~L~~LdLs~-N~Lt---------~LP~l--~s~L~~LdLS~N~-Lss 416 (788)
T PRK15387 382 SGLKELIVSG-NRLT---------SLPVL--PSELKELMVSGNR-LTS 416 (788)
T ss_pred cccceEEecC-Cccc---------CCCCc--ccCCCEEEccCCc-CCC
Confidence 4677888877 3444 12222 3567788888774 543
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.24 E-value=0.0012 Score=66.65 Aligned_cols=109 Identities=28% Similarity=0.214 Sum_probs=60.8
Q ss_pred cCCCCcEEEeeCCCCC-CChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHh
Q 017279 103 KLTKLQTLVLRQDKPQ-LEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCG 181 (374)
Q Consensus 103 ~~~~L~~L~l~~~~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~ 181 (374)
.++++++|-+. .+.. +.. ....+...++.|+.||+++|..+.. ....+ ..+-+||+|++++ +.+. .++.-..
T Consensus 543 ~~~~L~tLll~-~n~~~l~~-is~~ff~~m~~LrVLDLs~~~~l~~-LP~~I-~~Li~LryL~L~~-t~I~--~LP~~l~ 615 (889)
T KOG4658|consen 543 ENPKLRTLLLQ-RNSDWLLE-ISGEFFRSLPLLRVLDLSGNSSLSK-LPSSI-GELVHLRYLDLSD-TGIS--HLPSGLG 615 (889)
T ss_pred CCCccceEEEe-ecchhhhh-cCHHHHhhCcceEEEECCCCCccCc-CChHH-hhhhhhhcccccC-CCcc--ccchHHH
Confidence 45567777766 2221 111 1112234578899999987643322 22233 3367888888887 4554 2333344
Q ss_pred cCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCC
Q 017279 182 FCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWC 221 (374)
Q Consensus 182 ~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 221 (374)
.+..|.+|++...... ..+..+...+++|++|.+...
T Consensus 616 ~Lk~L~~Lnl~~~~~l---~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 616 NLKKLIYLNLEVTGRL---ESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred HHHhhheecccccccc---ccccchhhhcccccEEEeecc
Confidence 5667888888764421 122344445777888877653
No 41
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.09 E-value=0.00012 Score=71.63 Aligned_cols=125 Identities=27% Similarity=0.302 Sum_probs=71.1
Q ss_pred CCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCC--CCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCC
Q 017279 134 LQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGC--TSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCN 211 (374)
Q Consensus 134 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~--~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~ 211 (374)
|+.|.+.++ .+++..+..+.. +++||.|+|+++ ..|++..+. +++.|++|+|+|.. .. .+..-...++
T Consensus 361 Lq~LylanN-~Ltd~c~p~l~~-~~hLKVLhLsyNrL~~fpas~~~----kle~LeeL~LSGNk--L~--~Lp~tva~~~ 430 (1081)
T KOG0618|consen 361 LQELYLANN-HLTDSCFPVLVN-FKHLKVLHLSYNRLNSFPASKLR----KLEELEELNLSGNK--LT--TLPDTVANLG 430 (1081)
T ss_pred HHHHHHhcC-cccccchhhhcc-ccceeeeeecccccccCCHHHHh----chHHhHHHhcccch--hh--hhhHHHHhhh
Confidence 444455553 566666665544 789999999874 235555444 56889999998844 22 2222222466
Q ss_pred CCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCC
Q 017279 212 QLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCR 274 (374)
Q Consensus 212 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~ 274 (374)
.|++|...++.-.. +..+. ..+.|+.+|++. +.++...+..... .|+|++|+++++.
T Consensus 431 ~L~tL~ahsN~l~~---fPe~~-~l~qL~~lDlS~-N~L~~~~l~~~~p-~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 431 RLHTLRAHSNQLLS---FPELA-QLPQLKVLDLSC-NNLSEVTLPEALP-SPNLKYLDLSGNT 487 (1081)
T ss_pred hhHHHhhcCCceee---chhhh-hcCcceEEeccc-chhhhhhhhhhCC-CcccceeeccCCc
Confidence 66666665432111 12222 356677777775 4565544443332 3677777777665
No 42
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=96.97 E-value=0.00019 Score=44.13 Aligned_cols=29 Identities=14% Similarity=-0.112 Sum_probs=24.7
Q ss_pred CCcCHHHHHHHHHHHHHhccccCCCCccc
Q 017279 6 TNLSSEDLNLCFEKMMMAGAGADRAGGVK 34 (374)
Q Consensus 6 ~~lp~e~~~~i~~~l~~~~~~~~~~~~~~ 34 (374)
..||+|++.+||+||+..|..+++.||..
T Consensus 2 ~~LP~Eil~~If~~L~~~dl~~~~~vcr~ 30 (47)
T PF12937_consen 2 SSLPDEILLEIFSYLDPRDLLRLSLVCRR 30 (47)
T ss_dssp CCS-HHHHHHHHTTS-HHHHHHHTTSSHH
T ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 47999999999999999999999999943
No 43
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=96.92 E-value=0.00031 Score=62.27 Aligned_cols=71 Identities=23% Similarity=0.230 Sum_probs=43.4
Q ss_pred HhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCC
Q 017279 259 ANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCS 338 (374)
Q Consensus 259 ~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~ 338 (374)
+..+|+|+.|+++++. ++...-..+... ..+++|.+.. +++.... ..++ ....
T Consensus 270 f~~L~~L~~lnlsnN~-i~~i~~~aFe~~------------------a~l~eL~L~~-N~l~~v~-~~~f------~~ls 322 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNK-ITRIEDGAFEGA------------------AELQELYLTR-NKLEFVS-SGMF------QGLS 322 (498)
T ss_pred HhhcccceEeccCCCc-cchhhhhhhcch------------------hhhhhhhcCc-chHHHHH-HHhh------hccc
Confidence 4457888888888774 554333333332 5778888876 4443221 1222 4567
Q ss_pred CCceEEecCCcccccccce
Q 017279 339 GRHSLVMSGCLNLTSVHCV 357 (374)
Q Consensus 339 ~L~~L~ls~C~~l~~~~~~ 357 (374)
.|+.|++.+. .||.+.+.
T Consensus 323 ~L~tL~L~~N-~it~~~~~ 340 (498)
T KOG4237|consen 323 GLKTLSLYDN-QITTVAPG 340 (498)
T ss_pred cceeeeecCC-eeEEEecc
Confidence 8899999998 47665543
No 44
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.90 E-value=0.0012 Score=58.96 Aligned_cols=41 Identities=20% Similarity=0.245 Sum_probs=31.7
Q ss_pred cccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCcc
Q 017279 301 GRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLN 350 (374)
Q Consensus 301 ~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~ 350 (374)
++..+.+|+.|++.++ .+. . --|.+++|++|++|+++|.+.
T Consensus 500 ~l~nm~nL~tLDL~nN-dlq-----~---IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 500 GLKNMRNLTTLDLQNN-DLQ-----Q---IPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred HhhhhhhcceeccCCC-chh-----h---CChhhccccceeEEEecCCcc
Confidence 5778899999999873 332 1 224679999999999999874
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.90 E-value=9.8e-05 Score=70.35 Aligned_cols=33 Identities=33% Similarity=0.314 Sum_probs=17.2
Q ss_pred CCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCC
Q 017279 210 CNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCG 246 (374)
Q Consensus 210 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 246 (374)
++.|+.|+++++. +++. . ....|++|++|||++
T Consensus 186 l~ale~LnLshNk-~~~v--~-~Lr~l~~LkhLDlsy 218 (1096)
T KOG1859|consen 186 LPALESLNLSHNK-FTKV--D-NLRRLPKLKHLDLSY 218 (1096)
T ss_pred HHHhhhhccchhh-hhhh--H-HHHhccccccccccc
Confidence 4566666666533 3332 1 223456666666665
No 46
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.89 E-value=0.0015 Score=34.30 Aligned_cols=24 Identities=54% Similarity=0.933 Sum_probs=15.2
Q ss_pred CCCCceEecCCCCCCCHHHHHHHH
Q 017279 262 CPHLRSLGLYYCRNITDRAIYSLA 285 (374)
Q Consensus 262 ~~~L~~L~l~~~~~i~~~~~~~l~ 285 (374)
||+|++|++++|.+++|.++..++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 456666666666666666666554
No 47
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.69 E-value=0.0033 Score=62.63 Aligned_cols=11 Identities=9% Similarity=0.214 Sum_probs=6.5
Q ss_pred CCCCEEecCCC
Q 017279 132 HDLQDLDLSKS 142 (374)
Q Consensus 132 ~~L~~L~l~~~ 142 (374)
++|++|+++++
T Consensus 220 ~nL~~L~Ls~N 230 (754)
T PRK15370 220 GNIKTLYANSN 230 (754)
T ss_pred cCCCEEECCCC
Confidence 35666666654
No 48
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.64 E-value=0.0011 Score=56.82 Aligned_cols=127 Identities=22% Similarity=0.221 Sum_probs=78.9
Q ss_pred CCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCC
Q 017279 132 HDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCN 211 (374)
Q Consensus 132 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~ 211 (374)
..|++++++++ .++. +..-.+-.|.++.|+++. +++...+- ...+++|++|+|++.. -..+..+-..+-
T Consensus 284 q~LtelDLS~N-~I~~--iDESvKL~Pkir~L~lS~-N~i~~v~n---La~L~~L~~LDLS~N~----Ls~~~Gwh~KLG 352 (490)
T KOG1259|consen 284 QELTELDLSGN-LITQ--IDESVKLAPKLRRLILSQ-NRIRTVQN---LAELPQLQLLDLSGNL----LAECVGWHLKLG 352 (490)
T ss_pred hhhhhcccccc-chhh--hhhhhhhccceeEEeccc-cceeeehh---hhhcccceEeecccch----hHhhhhhHhhhc
Confidence 45778888875 3321 223334468999999987 34443221 2347899999998832 233444444567
Q ss_pred CCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCC
Q 017279 212 QLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCR 274 (374)
Q Consensus 212 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~ 274 (374)
++++|.+..+. + +.+..+. .+-+|..|++++++.-.-+.+..+.. +|-|+++.+.+++
T Consensus 353 NIKtL~La~N~-i--E~LSGL~-KLYSLvnLDl~~N~Ie~ldeV~~IG~-LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 353 NIKTLKLAQNK-I--ETLSGLR-KLYSLVNLDLSSNQIEELDEVNHIGN-LPCLETLRLTGNP 410 (490)
T ss_pred CEeeeehhhhh-H--hhhhhhH-hhhhheeccccccchhhHHHhccccc-ccHHHHHhhcCCC
Confidence 88889888743 2 1222222 34578899999854323445555553 8889999988876
No 49
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.51 E-value=0.00077 Score=57.15 Aligned_cols=38 Identities=24% Similarity=0.283 Sum_probs=16.7
Q ss_pred CCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCC
Q 017279 210 CNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCV 248 (374)
Q Consensus 210 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 248 (374)
|.+|++|.|..+. +.+.+-....+++|+|+.|-|..++
T Consensus 62 CtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 62 CTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWLDENP 99 (388)
T ss_pred HHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhhccCC
Confidence 5555555554322 3332222333445555555555433
No 50
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.47 E-value=0.0045 Score=32.46 Aligned_cols=24 Identities=63% Similarity=1.142 Sum_probs=17.1
Q ss_pred CCCCCeeecCCCCCCCHHHHHHHH
Q 017279 236 CPDLRSLDLCGCVCITDDSVIALA 259 (374)
Q Consensus 236 ~~~L~~L~l~~~~~l~~~~l~~l~ 259 (374)
||+|++|++++|..+++.++..+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 467777777777777777776654
No 51
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.36 E-value=0.00018 Score=47.10 Aligned_cols=38 Identities=21% Similarity=0.217 Sum_probs=22.9
Q ss_pred CCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCc
Q 017279 304 DEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCL 349 (374)
Q Consensus 304 ~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~ 349 (374)
.+++|++|++++ +.++..... .+..+++|+.|++++|.
T Consensus 23 ~l~~L~~L~l~~-N~l~~i~~~-------~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 23 NLPNLETLDLSN-NNLTSIPPD-------AFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TGTTESEEEETS-SSESEEETT-------TTTTSTTESEEEETSSS
T ss_pred CCCCCCEeEccC-CccCccCHH-------HHcCCCCCCEEeCcCCc
Confidence 347777777776 445421111 23567788888888774
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.24 E-value=0.0044 Score=37.30 Aligned_cols=37 Identities=22% Similarity=0.410 Sum_probs=27.5
Q ss_pred CCCcEEecCCCCCCCHHHHHHHHhhCCC-ccCCCCCceEEecCCccccc
Q 017279 306 EGLQSLNISQCTALTPPAVQALCDTFPA-LHTCSGRHSLVMSGCLNLTS 353 (374)
Q Consensus 306 ~~L~~L~l~~~~~l~~~~l~~l~~~~~~-l~~~~~L~~L~ls~C~~l~~ 353 (374)
++|++|++++ +++++ +|. +.+|++|+.|++++|. +++
T Consensus 1 ~~L~~L~l~~-N~i~~---------l~~~l~~l~~L~~L~l~~N~-i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSN-NQITD---------LPPELSNLPNLETLNLSNNP-ISD 38 (44)
T ss_dssp TT-SEEEETS-SS-SS---------HGGHGTTCTTSSEEEETSSC-CSB
T ss_pred CcceEEEccC-CCCcc---------cCchHhCCCCCCEEEecCCC-CCC
Confidence 5899999999 57774 222 5789999999999995 665
No 53
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.89 E-value=0.0015 Score=61.56 Aligned_cols=198 Identities=28% Similarity=0.325 Sum_probs=106.8
Q ss_pred CcEEEeeCCCCCCChHHHHHHH---HhCCCCCEEecCCCCCCCHHHHHHHHhcCC----CCcEEeecCCCCCCHHH---H
Q 017279 107 LQTLVLRQDKPQLEDNAVEAIA---NSCHDLQDLDLSKSFKLSDRSLYALAHGCP----NLTRLNISGCTSFSDHA---L 176 (374)
Q Consensus 107 L~~L~l~~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~----~L~~L~L~~~~~~~~~~---~ 176 (374)
+..+.+. .+.+.+.....+. ...+.|+.|+++++ .+++.+...+.+..+ .|++|++..| .++..+ +
T Consensus 89 l~~L~L~--~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n-~l~~~g~~~l~~~l~~~~~~l~~L~l~~c-~l~~~g~~~l 164 (478)
T KOG4308|consen 89 LLHLSLA--NNRLGDRGAEELAQALKTLPTLGQLDLSGN-NLGDEGARLLCEGLRLPQCLLQTLELVSC-SLTSEGAAPL 164 (478)
T ss_pred HHHhhhh--hCccccchHHHHHHHhcccccHhHhhcccC-CCccHhHHHHHhhcccchHHHHHHHhhcc-cccccchHHH
Confidence 5556666 3344443333333 33566777888875 555776666655443 3455566554 333333 2
Q ss_pred HHHHhcCCCCcEEEcCCCccCccHHHHHHHH---h----cCCCCCEEeccCCCCCCHHHHHHH---HhcCCC-CCeeecC
Q 017279 177 AYLCGFCRKLKILNLCGCVKAATDYALQAIG---R----NCNQLQSLNLGWCEDVGDVGVMNL---AYGCPD-LRSLDLC 245 (374)
Q Consensus 177 ~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~---~----~~~~L~~L~l~~~~~~~~~~~~~l---~~~~~~-L~~L~l~ 245 (374)
.......+.++.+++..+. +.......+. + ...++++|++.+|. +++.....+ ....+. +..|++.
T Consensus 165 ~~~L~~~~~l~~l~l~~n~--l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~-~t~~~c~~l~~~l~~~~~~~~el~l~ 241 (478)
T KOG4308|consen 165 AAVLEKNEHLTELDLSLNG--LIELGLLVLSQALESAASPLSSLETLKLSRCG-VTSSSCALLDEVLASGESLLRELDLA 241 (478)
T ss_pred HHHHhcccchhHHHHHhcc--cchhhhHHHhhhhhhhhcccccHHHHhhhhcC-cChHHHHHHHHHHhccchhhHHHHHH
Confidence 2223335667777776543 2222222211 1 34567777777654 444433333 223344 5557777
Q ss_pred CCCCCCHHHHHHHHhcC----CCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCH
Q 017279 246 GCVCITDDSVIALANGC----PHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTP 321 (374)
Q Consensus 246 ~~~~l~~~~l~~l~~~~----~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 321 (374)
. +.+.+.++..+.+.+ +.++++++..|. +++.+...+..... .++.++++.++. +.+++
T Consensus 242 ~-n~l~d~g~~~L~~~l~~~~~~l~~l~l~~ns-i~~~~~~~L~~~l~--------------~~~~l~~l~l~~-n~l~~ 304 (478)
T KOG4308|consen 242 S-NKLGDVGVEKLLPCLSVLSETLRVLDLSRNS-ITEKGVRDLAEVLV--------------SCRQLEELSLSN-NPLTD 304 (478)
T ss_pred h-cCcchHHHHHHHHHhcccchhhhhhhhhcCC-ccccchHHHHHHHh--------------hhHHHHHhhccc-Ccccc
Confidence 6 466666665555543 345777777775 66666666655421 346788888877 55666
Q ss_pred HHHHHHH
Q 017279 322 PAVQALC 328 (374)
Q Consensus 322 ~~l~~l~ 328 (374)
...+.+.
T Consensus 305 ~~~~~~~ 311 (478)
T KOG4308|consen 305 YGVELLL 311 (478)
T ss_pred HHHHHHH
Confidence 5554444
No 54
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.75 E-value=0.0035 Score=52.73 Aligned_cols=89 Identities=25% Similarity=0.275 Sum_probs=48.7
Q ss_pred CCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCC-HHHHHHHHhc
Q 017279 183 CRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCIT-DDSVIALANG 261 (374)
Q Consensus 183 ~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~-~~~l~~l~~~ 261 (374)
+|+|++|.++.... -....+..++..+|+|++|+++++. +.+..-..-.+.+++|..|++.+|.... +.--..++.-
T Consensus 64 Lp~LkkL~lsdn~~-~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~l 141 (260)
T KOG2739|consen 64 LPKLKKLELSDNYR-RVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLL 141 (260)
T ss_pred cchhhhhcccCCcc-cccccceehhhhCCceeEEeecCCc-cccccccchhhhhcchhhhhcccCCccccccHHHHHHHH
Confidence 56777777765422 1223455566667777777777643 3332112223345677788887764221 1111233444
Q ss_pred CCCCceEecCCC
Q 017279 262 CPHLRSLGLYYC 273 (374)
Q Consensus 262 ~~~L~~L~l~~~ 273 (374)
+|+|+.|+-..+
T Consensus 142 l~~L~~LD~~dv 153 (260)
T KOG2739|consen 142 LPSLKYLDGCDV 153 (260)
T ss_pred hhhhcccccccc
Confidence 677777765544
No 55
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.74 E-value=0.0052 Score=52.28 Aligned_cols=56 Identities=27% Similarity=0.344 Sum_probs=28.5
Q ss_pred CCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCC
Q 017279 211 NQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCR 274 (374)
Q Consensus 211 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~ 274 (374)
.+.++|+.++|. ++|. .++..+|.|+.|.++- +.|+ .+..+. .|.+|+.|.|..+.
T Consensus 19 ~~vkKLNcwg~~-L~DI---sic~kMp~lEVLsLSv-NkIs--sL~pl~-rCtrLkElYLRkN~ 74 (388)
T KOG2123|consen 19 ENVKKLNCWGCG-LDDI---SICEKMPLLEVLSLSV-NKIS--SLAPLQ-RCTRLKELYLRKNC 74 (388)
T ss_pred HHhhhhcccCCC-ccHH---HHHHhcccceeEEeec-cccc--cchhHH-HHHHHHHHHHHhcc
Confidence 345556666643 4442 2344556666666665 3343 122333 36666666665543
No 56
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=95.67 E-value=0.0012 Score=63.37 Aligned_cols=103 Identities=25% Similarity=0.217 Sum_probs=55.2
Q ss_pred CCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHh-cCCCCCEEeccCCCCCCHHHHHHHHhc
Q 017279 157 CPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGR-NCNQLQSLNLGWCEDVGDVGVMNLAYG 235 (374)
Q Consensus 157 ~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~-~~~~L~~L~l~~~~~~~~~~~~~l~~~ 235 (374)
++.|+.|+|+. +.+++.. ....|+.|++|||++.. +.. +..+.. .| +|+.|.++++. ++. +..+ ..
T Consensus 186 l~ale~LnLsh-Nk~~~v~---~Lr~l~~LkhLDlsyN~--L~~--vp~l~~~gc-~L~~L~lrnN~-l~t--L~gi-e~ 252 (1096)
T KOG1859|consen 186 LPALESLNLSH-NKFTKVD---NLRRLPKLKHLDLSYNC--LRH--VPQLSMVGC-KLQLLNLRNNA-LTT--LRGI-EN 252 (1096)
T ss_pred HHHhhhhccch-hhhhhhH---HHHhcccccccccccch--hcc--ccccchhhh-hheeeeecccH-HHh--hhhH-Hh
Confidence 46778888876 4555543 23457888888887733 211 111111 13 37777777643 221 2222 24
Q ss_pred CCCCCeeecCCCCCCCHHH-HHHHHhcCCCCceEecCCCC
Q 017279 236 CPDLRSLDLCGCVCITDDS-VIALANGCPHLRSLGLYYCR 274 (374)
Q Consensus 236 ~~~L~~L~l~~~~~l~~~~-l~~l~~~~~~L~~L~l~~~~ 274 (374)
+.+|+.||+++ +.+.+.. +.-+. .+..|+.|++.+++
T Consensus 253 LksL~~LDlsy-Nll~~hseL~pLw-sLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 253 LKSLYGLDLSY-NLLSEHSELEPLW-SLSSLIVLWLEGNP 290 (1096)
T ss_pred hhhhhccchhH-hhhhcchhhhHHH-HHHHHHHHhhcCCc
Confidence 56788888887 3343221 11111 24457777777765
No 57
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.58 E-value=0.0059 Score=51.40 Aligned_cols=63 Identities=33% Similarity=0.464 Sum_probs=27.0
Q ss_pred CCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHH-HHHHHHhcCCCCcEEEcCCCc
Q 017279 131 CHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDH-ALAYLCGFCRKLKILNLCGCV 195 (374)
Q Consensus 131 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~-~~~~l~~~~~~L~~L~L~~~~ 195 (374)
+++|++|.++.+..-...++..++..+|+|++|++++ +.+.+. .+.. ...+++|..|++.+|.
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~-Nki~~lstl~p-l~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG-NKIKDLSTLRP-LKELENLKSLDLFNCS 127 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecC-Cccccccccch-hhhhcchhhhhcccCC
Confidence 4455555555542222223444444445555555554 233321 1111 1234455555555544
No 58
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=95.57 E-value=0.055 Score=54.12 Aligned_cols=54 Identities=20% Similarity=0.158 Sum_probs=30.4
Q ss_pred CCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCC
Q 017279 211 NQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCR 274 (374)
Q Consensus 211 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~ 274 (374)
++|+.|+++++. ++. +... -+++|+.|++++| .++. +..- ..++|+.|++++|.
T Consensus 325 ~sL~~L~Ls~N~-Lt~--LP~~--l~~sL~~L~Ls~N-~L~~--LP~~--lp~~L~~LdLs~N~ 378 (754)
T PRK15370 325 PGLKTLEAGENA-LTS--LPAS--LPPELQVLDVSKN-QITV--LPET--LPPTITTLDVSRNA 378 (754)
T ss_pred ccceeccccCCc-ccc--CChh--hcCcccEEECCCC-CCCc--CChh--hcCCcCEEECCCCc
Confidence 467777776643 322 1111 1367888888885 3442 1111 13678888888875
No 59
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=95.45 E-value=0.00031 Score=55.14 Aligned_cols=131 Identities=20% Similarity=0.173 Sum_probs=59.2
Q ss_pred cCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhc
Q 017279 103 KLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGF 182 (374)
Q Consensus 103 ~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~ 182 (374)
...++++|.++ .+.++.- ...++. ..+|+.|++.++ .+.+ ...++ +.+|+|+.|+++-. .+. .++.-++.
T Consensus 31 ~~s~ITrLtLS--HNKl~~v-ppnia~-l~nlevln~~nn-qie~-lp~~i-ssl~klr~lnvgmn-rl~--~lprgfgs 100 (264)
T KOG0617|consen 31 NMSNITRLTLS--HNKLTVV-PPNIAE-LKNLEVLNLSNN-QIEE-LPTSI-SSLPKLRILNVGMN-RLN--ILPRGFGS 100 (264)
T ss_pred chhhhhhhhcc--cCceeec-CCcHHH-hhhhhhhhcccc-hhhh-cChhh-hhchhhhheecchh-hhh--cCccccCC
Confidence 34556666666 3332211 112222 456777777664 2221 11222 33677777776531 111 01222345
Q ss_pred CCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCC
Q 017279 183 CRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCV 248 (374)
Q Consensus 183 ~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 248 (374)
+|.|+.|++.+.. .+...+..-+-.+..|+.|.++.++ + +.+..-...+.+|+.|.+..+.
T Consensus 101 ~p~levldltynn--l~e~~lpgnff~m~tlralyl~dnd-f--e~lp~dvg~lt~lqil~lrdnd 161 (264)
T KOG0617|consen 101 FPALEVLDLTYNN--LNENSLPGNFFYMTTLRALYLGDND-F--EILPPDVGKLTNLQILSLRDND 161 (264)
T ss_pred Cchhhhhhccccc--cccccCCcchhHHHHHHHHHhcCCC-c--ccCChhhhhhcceeEEeeccCc
Confidence 6777777777632 3444333322234455555555432 1 1111112234566666666643
No 60
>PLN03150 hypothetical protein; Provisional
Probab=95.30 E-value=0.028 Score=55.37 Aligned_cols=12 Identities=33% Similarity=0.401 Sum_probs=6.1
Q ss_pred CCCCceEecCCC
Q 017279 262 CPHLRSLGLYYC 273 (374)
Q Consensus 262 ~~~L~~L~l~~~ 273 (374)
+++|+.|+++++
T Consensus 465 l~~L~~LdLs~N 476 (623)
T PLN03150 465 ITSLEVLDLSYN 476 (623)
T ss_pred CCCCCEEECCCC
Confidence 455555555544
No 61
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=95.22 E-value=0.0055 Score=37.65 Aligned_cols=28 Identities=11% Similarity=-0.099 Sum_probs=23.1
Q ss_pred CcCHHHHHHHHHHHHHhccccCCCCccc
Q 017279 7 NLSSEDLNLCFEKMMMAGAGADRAGGVK 34 (374)
Q Consensus 7 ~lp~e~~~~i~~~l~~~~~~~~~~~~~~ 34 (374)
.||+|++.+||++|+..++.+++.||..
T Consensus 5 ~LP~~il~~Il~~l~~~~~~~l~~vsk~ 32 (48)
T PF00646_consen 5 DLPDEILQEILSYLDPKDLLRLSLVSKR 32 (48)
T ss_dssp HS-HHHHHHHHHTS-HHHHHHHCTT-HH
T ss_pred HCCHHHHHHHHHHCcHHHHHHHHHHhhH
Confidence 6999999999999999999999999943
No 62
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.13 E-value=0.021 Score=53.87 Aligned_cols=181 Identities=27% Similarity=0.309 Sum_probs=93.2
Q ss_pred HHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhC----CCCCEEecCCCCCCCHHHHHHHHh---cCCCCcEEeecCCC
Q 017279 97 VLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSC----HDLQDLDLSKSFKLSDRSLYALAH---GCPNLTRLNISGCT 169 (374)
Q Consensus 97 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~----~~L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~L~~~~ 169 (374)
+.......+.|+.|+++ .+.+.+.....+.... ..+++|++..| .++.++...++. ....++.++++.+
T Consensus 107 l~~~l~t~~~L~~L~l~--~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c-~l~~~g~~~l~~~L~~~~~l~~l~l~~n- 182 (478)
T KOG4308|consen 107 LAQALKTLPTLGQLDLS--GNNLGDEGARLLCEGLRLPQCLLQTLELVSC-SLTSEGAAPLAAVLEKNEHLTELDLSLN- 182 (478)
T ss_pred HHHHhcccccHhHhhcc--cCCCccHhHHHHHhhcccchHHHHHHHhhcc-cccccchHHHHHHHhcccchhHHHHHhc-
Confidence 44445556677777777 4455555554444332 23455666664 444444333332 2456666666653
Q ss_pred CCCHHHHHHHHh-------cCCCCcEEEcCCCccCccHHHHHHHH---hcCCC-CCEEeccCCCCCCHHHHHHHHhcC--
Q 017279 170 SFSDHALAYLCG-------FCRKLKILNLCGCVKAATDYALQAIG---RNCNQ-LQSLNLGWCEDVGDVGVMNLAYGC-- 236 (374)
Q Consensus 170 ~~~~~~~~~l~~-------~~~~L~~L~L~~~~~~~~~~~~~~l~---~~~~~-L~~L~l~~~~~~~~~~~~~l~~~~-- 236 (374)
.+...+...+.. ...++++|.+.+|. ++...+..+. ...++ +..|++..+ .+.+.++..+.+.+
T Consensus 183 ~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~--~t~~~c~~l~~~l~~~~~~~~el~l~~n-~l~d~g~~~L~~~l~~ 259 (478)
T KOG4308|consen 183 GLIELGLLVLSQALESAASPLSSLETLKLSRCG--VTSSSCALLDEVLASGESLLRELDLASN-KLGDVGVEKLLPCLSV 259 (478)
T ss_pred ccchhhhHHHhhhhhhhhcccccHHHHhhhhcC--cChHHHHHHHHHHhccchhhHHHHHHhc-CcchHHHHHHHHHhcc
Confidence 332333222211 23467777777765 3444433332 23333 555666653 35555555554433
Q ss_pred --CCCCeeecCCCCCCCHHHHHHH---HhcCCCCceEecCCCCCCCHHHHHHHHh
Q 017279 237 --PDLRSLDLCGCVCITDDSVIAL---ANGCPHLRSLGLYYCRNITDRAIYSLAQ 286 (374)
Q Consensus 237 --~~L~~L~l~~~~~l~~~~l~~l---~~~~~~L~~L~l~~~~~i~~~~~~~l~~ 286 (374)
+.++.+++..| .+++.+...+ ...+++++.+.++.++ +.+.+...+..
T Consensus 260 ~~~~l~~l~l~~n-si~~~~~~~L~~~l~~~~~l~~l~l~~n~-l~~~~~~~~~~ 312 (478)
T KOG4308|consen 260 LSETLRVLDLSRN-SITEKGVRDLAEVLVSCRQLEELSLSNNP-LTDYGVELLLE 312 (478)
T ss_pred cchhhhhhhhhcC-CccccchHHHHHHHhhhHHHHHhhcccCc-cccHHHHHHHH
Confidence 34577777774 4554444333 3346677777777665 66555554443
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.10 E-value=0.0072 Score=48.95 Aligned_cols=108 Identities=20% Similarity=0.260 Sum_probs=58.3
Q ss_pred CCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCH-HHHHHHHhc
Q 017279 183 CRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITD-DSVIALANG 261 (374)
Q Consensus 183 ~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~-~~l~~l~~~ 261 (374)
..+...++|++.. + .-...+...+.|.+|.+.++. ++..+ ..+..-+|+|+.|.+.++ .+.. ..+..+. .
T Consensus 41 ~d~~d~iDLtdNd--l---~~l~~lp~l~rL~tLll~nNr-It~I~-p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa-~ 111 (233)
T KOG1644|consen 41 LDQFDAIDLTDND--L---RKLDNLPHLPRLHTLLLNNNR-ITRID-PDLDTFLPNLKTLILTNN-SIQELGDLDPLA-S 111 (233)
T ss_pred ccccceecccccc--h---hhcccCCCccccceEEecCCc-ceeec-cchhhhccccceEEecCc-chhhhhhcchhc-c
Confidence 3456667776522 1 111123356778888887643 43321 122334588888888884 3432 2233444 3
Q ss_pred CCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCC
Q 017279 262 CPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQ 315 (374)
Q Consensus 262 ~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 315 (374)
||+|++|.+-+++ ++...-..... +..+|+|+.|++.+
T Consensus 112 ~p~L~~Ltll~Np-v~~k~~YR~yv---------------l~klp~l~~LDF~k 149 (233)
T KOG1644|consen 112 CPKLEYLTLLGNP-VEHKKNYRLYV---------------LYKLPSLRTLDFQK 149 (233)
T ss_pred CCccceeeecCCc-hhcccCceeEE---------------EEecCcceEeehhh
Confidence 8888888887765 33211111110 33568888888865
No 64
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=94.95 E-value=0.0022 Score=37.86 Aligned_cols=27 Identities=19% Similarity=0.011 Sum_probs=24.6
Q ss_pred cCHHHHHHHHHHHHHhccccCCCCccc
Q 017279 8 LSSEDLNLCFEKMMMAGAGADRAGGVK 34 (374)
Q Consensus 8 lp~e~~~~i~~~l~~~~~~~~~~~~~~ 34 (374)
||+|++.+||++++..+..+++.||..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~ 27 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRR 27 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 799999999999999999999988843
No 65
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=94.91 E-value=0.00072 Score=44.18 Aligned_cols=10 Identities=30% Similarity=0.514 Sum_probs=5.2
Q ss_pred CCCcEEecCC
Q 017279 306 EGLQSLNISQ 315 (374)
Q Consensus 306 ~~L~~L~l~~ 315 (374)
++|++|++++
T Consensus 49 ~~L~~L~l~~ 58 (61)
T PF13855_consen 49 PNLRYLDLSN 58 (61)
T ss_dssp TTESEEEETS
T ss_pred CCCCEEeCcC
Confidence 4555555554
No 66
>PLN03150 hypothetical protein; Provisional
Probab=94.89 E-value=0.046 Score=53.86 Aligned_cols=108 Identities=17% Similarity=0.103 Sum_probs=64.5
Q ss_pred CCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCC
Q 017279 134 LQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQL 213 (374)
Q Consensus 134 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L 213 (374)
++.|+|+++ .+.......+. .+++|+.|+|+++ .+.. .++.....+++|+.|+|+++. +.... ......+++|
T Consensus 420 v~~L~L~~n-~L~g~ip~~i~-~L~~L~~L~Ls~N-~l~g-~iP~~~~~l~~L~~LdLs~N~--lsg~i-P~~l~~L~~L 492 (623)
T PLN03150 420 IDGLGLDNQ-GLRGFIPNDIS-KLRHLQSINLSGN-SIRG-NIPPSLGSITSLEVLDLSYNS--FNGSI-PESLGQLTSL 492 (623)
T ss_pred EEEEECCCC-CccccCCHHHh-CCCCCCEEECCCC-cccC-cCChHHhCCCCCCEEECCCCC--CCCCC-chHHhcCCCC
Confidence 677888875 44433333343 4789999999874 3332 133334568899999998854 33322 2333468899
Q ss_pred CEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCC
Q 017279 214 QSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVC 249 (374)
Q Consensus 214 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 249 (374)
+.|+++++. +.......+.....++..+++.++..
T Consensus 493 ~~L~Ls~N~-l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 493 RILNLNGNS-LSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CEEECcCCc-ccccCChHHhhccccCceEEecCCcc
Confidence 999998754 43322222322234667788887543
No 67
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.68 E-value=0.1 Score=47.07 Aligned_cols=107 Identities=22% Similarity=0.143 Sum_probs=54.4
Q ss_pred hCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhc
Q 017279 130 SCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRN 209 (374)
Q Consensus 130 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~ 209 (374)
.+++|..|+++++ .+.+- ...+. ....|+.|+++.. .|.. .+........|+.+-.+... +...... =...
T Consensus 433 ~l~kLt~L~L~NN-~Ln~L-P~e~~-~lv~Lq~LnlS~N-rFr~--lP~~~y~lq~lEtllas~nq--i~~vd~~-~l~n 503 (565)
T KOG0472|consen 433 QLQKLTFLDLSNN-LLNDL-PEEMG-SLVRLQTLNLSFN-RFRM--LPECLYELQTLETLLASNNQ--IGSVDPS-GLKN 503 (565)
T ss_pred hhhcceeeecccc-hhhhc-chhhh-hhhhhheeccccc-cccc--chHHHhhHHHHHHHHhcccc--ccccChH-Hhhh
Confidence 3677888888875 23221 11111 2456888888763 3332 22222222333333333211 1111111 1234
Q ss_pred CCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCC
Q 017279 210 CNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCV 248 (374)
Q Consensus 210 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 248 (374)
+.+|..|++.+++ + ..+..+.+.|.+|++|.++|++
T Consensus 504 m~nL~tLDL~nNd-l--q~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 504 MRNLTTLDLQNND-L--QQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred hhhcceeccCCCc-h--hhCChhhccccceeEEEecCCc
Confidence 6788888887643 2 2234455678888888888854
No 68
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=94.41 E-value=0.022 Score=51.35 Aligned_cols=38 Identities=24% Similarity=0.618 Sum_probs=34.1
Q ss_pred CccCCCCHHHHHHHhcCC-CccchhhhcccchhHHHhhh
Q 017279 41 TEWKDIPMELLLRILSLV-DEPTVIVASGVCSGWRDAIC 78 (374)
Q Consensus 41 ~~~~~Lp~eil~~If~~L-~~~~l~~~~~vc~~w~~~~~ 78 (374)
..|..||.|++..|..+| ..-|+++.+.||+.||.++.
T Consensus 2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~ 40 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVS 40 (373)
T ss_pred CChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence 479999999999999999 66689999999999998754
No 69
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=94.23 E-value=0.016 Score=50.03 Aligned_cols=40 Identities=28% Similarity=0.389 Sum_probs=33.3
Q ss_pred cCCccCCCCHHHHHHHhcCC-----CccchhhhcccchhHHHhhh
Q 017279 39 VITEWKDIPMELLLRILSLV-----DEPTVIVASGVCSGWRDAIC 78 (374)
Q Consensus 39 ~~~~~~~Lp~eil~~If~~L-----~~~~l~~~~~vc~~w~~~~~ 78 (374)
+...|..||+|++..||..+ +.+.+-++|.|||.|+..+.
T Consensus 103 ~~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R 147 (366)
T KOG2997|consen 103 ELISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCAR 147 (366)
T ss_pred hhhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHc
Confidence 34457899999999999964 67889999999999997653
No 70
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=93.90 E-value=0.00026 Score=55.55 Aligned_cols=149 Identities=23% Similarity=0.193 Sum_probs=75.9
Q ss_pred CceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q 017279 81 LTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNL 160 (374)
Q Consensus 81 l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 160 (374)
+.+|.+++.... .++.-.....+|+.|++. ++.+.+-. ..+ ..++.|+.|++..+ .+.. +..-...+|.|
T Consensus 35 ITrLtLSHNKl~---~vppnia~l~nlevln~~--nnqie~lp-~~i-ssl~klr~lnvgmn-rl~~--lprgfgs~p~l 104 (264)
T KOG0617|consen 35 ITRLTLSHNKLT---VVPPNIAELKNLEVLNLS--NNQIEELP-TSI-SSLPKLRILNVGMN-RLNI--LPRGFGSFPAL 104 (264)
T ss_pred hhhhhcccCcee---ecCCcHHHhhhhhhhhcc--cchhhhcC-hhh-hhchhhhheecchh-hhhc--CccccCCCchh
Confidence 445555544322 122223356678888887 55543321 222 33677888777654 1110 11111236888
Q ss_pred cEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCC
Q 017279 161 TRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLR 240 (374)
Q Consensus 161 ~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 240 (374)
+.|++.+ +++....++.-+-.+..|+.|.++..+. +.+..-...+.+|+.|.+..++-++ +..-...+..|+
T Consensus 105 evldlty-nnl~e~~lpgnff~m~tlralyl~dndf----e~lp~dvg~lt~lqil~lrdndll~---lpkeig~lt~lr 176 (264)
T KOG0617|consen 105 EVLDLTY-NNLNENSLPGNFFYMTTLRALYLGDNDF----EILPPDVGKLTNLQILSLRDNDLLS---LPKEIGDLTRLR 176 (264)
T ss_pred hhhhccc-cccccccCCcchhHHHHHHHHHhcCCCc----ccCChhhhhhcceeEEeeccCchhh---CcHHHHHHHHHH
Confidence 8888876 3444333322222245567777766332 2333333356777888777644222 222223346688
Q ss_pred eeecCCC
Q 017279 241 SLDLCGC 247 (374)
Q Consensus 241 ~L~l~~~ 247 (374)
+|.+.|+
T Consensus 177 elhiqgn 183 (264)
T KOG0617|consen 177 ELHIQGN 183 (264)
T ss_pred HHhcccc
Confidence 8888884
No 71
>PRK15386 type III secretion protein GogB; Provisional
Probab=93.79 E-value=0.071 Score=48.87 Aligned_cols=72 Identities=21% Similarity=0.261 Sum_probs=46.1
Q ss_pred cCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhc
Q 017279 182 FCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANG 261 (374)
Q Consensus 182 ~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~ 261 (374)
.|++++.|++++|. +. .++ .-.++|+.|.+++|..++. +.... .++|+.|++++|..+. . -
T Consensus 50 ~~~~l~~L~Is~c~--L~--sLP---~LP~sLtsL~Lsnc~nLts--LP~~L--P~nLe~L~Ls~Cs~L~-----s---L 110 (426)
T PRK15386 50 EARASGRLYIKDCD--IE--SLP---VLPNELTEITIENCNNLTT--LPGSI--PEGLEKLTVCHCPEIS-----G---L 110 (426)
T ss_pred HhcCCCEEEeCCCC--Cc--ccC---CCCCCCcEEEccCCCCccc--CCchh--hhhhhheEccCccccc-----c---c
Confidence 47899999999874 22 122 2234699999988766432 11111 2589999999986553 1 1
Q ss_pred CCCCceEecCC
Q 017279 262 CPHLRSLGLYY 272 (374)
Q Consensus 262 ~~~L~~L~l~~ 272 (374)
.+.|+.|.+..
T Consensus 111 P~sLe~L~L~~ 121 (426)
T PRK15386 111 PESVRSLEIKG 121 (426)
T ss_pred ccccceEEeCC
Confidence 34688888764
No 72
>PRK15386 type III secretion protein GogB; Provisional
Probab=93.62 E-value=0.17 Score=46.41 Aligned_cols=126 Identities=20% Similarity=0.243 Sum_probs=71.5
Q ss_pred HHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHH
Q 017279 123 AVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYA 202 (374)
Q Consensus 123 ~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~ 202 (374)
....+. .+.+++.|++++| .+.. +. .--++|++|.+++|..++.. +... .++|++|.+.+|.. +.
T Consensus 44 a~~r~~-~~~~l~~L~Is~c-~L~s--LP---~LP~sLtsL~Lsnc~nLtsL--P~~L--P~nLe~L~Ls~Cs~-L~--- 108 (426)
T PRK15386 44 ITPQIE-EARASGRLYIKDC-DIES--LP---VLPNELTEITIENCNNLTTL--PGSI--PEGLEKLTVCHCPE-IS--- 108 (426)
T ss_pred HHHHHH-HhcCCCEEEeCCC-CCcc--cC---CCCCCCcEEEccCCCCcccC--Cchh--hhhhhheEccCccc-cc---
Confidence 334433 3788999999987 3332 11 11246999999887665321 1111 25899999998753 21
Q ss_pred HHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCC
Q 017279 203 LQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNI 276 (374)
Q Consensus 203 ~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i 276 (374)
.-.++|+.|++.+.. ... +.. -.++|+.|.+.++.......+... -.++|+.|.+.+|..+
T Consensus 109 -----sLP~sLe~L~L~~n~-~~~--L~~---LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i 169 (426)
T PRK15386 109 -----GLPESVRSLEIKGSA-TDS--IKN---VPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI 169 (426)
T ss_pred -----ccccccceEEeCCCC-Ccc--ccc---CcchHhheeccccccccccccccc--cCCcccEEEecCCCcc
Confidence 123578888886532 221 222 225788888865332211111111 1357999999988743
No 73
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.39 E-value=0.078 Score=26.96 Aligned_cols=22 Identities=41% Similarity=0.548 Sum_probs=11.1
Q ss_pred CCCceEecCCCCCCCHHHHHHHH
Q 017279 263 PHLRSLGLYYCRNITDRAIYSLA 285 (374)
Q Consensus 263 ~~L~~L~l~~~~~i~~~~~~~l~ 285 (374)
++|+.|+|++|. ++++++..++
T Consensus 2 ~~L~~L~l~~n~-i~~~g~~~l~ 23 (24)
T PF13516_consen 2 PNLETLDLSNNQ-ITDEGASALA 23 (24)
T ss_dssp TT-SEEE-TSSB-EHHHHHHHHH
T ss_pred CCCCEEEccCCc-CCHHHHHHhC
Confidence 455566665554 5555555543
No 74
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=93.37 E-value=0.12 Score=30.98 Aligned_cols=11 Identities=36% Similarity=0.754 Sum_probs=4.7
Q ss_pred CCCCCeeecCC
Q 017279 236 CPDLRSLDLCG 246 (374)
Q Consensus 236 ~~~L~~L~l~~ 246 (374)
+++|+.|++++
T Consensus 23 l~~L~~L~l~~ 33 (44)
T PF12799_consen 23 LPNLETLNLSN 33 (44)
T ss_dssp CTTSSEEEETS
T ss_pred CCCCCEEEecC
Confidence 44444444444
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.10 E-value=0.08 Score=24.47 Aligned_cols=15 Identities=33% Similarity=0.266 Sum_probs=8.9
Q ss_pred CCCceEEecCCccccc
Q 017279 338 SGRHSLVMSGCLNLTS 353 (374)
Q Consensus 338 ~~L~~L~ls~C~~l~~ 353 (374)
++|+.|++++|. +++
T Consensus 1 ~~L~~L~l~~n~-L~~ 15 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTS 15 (17)
T ss_dssp TT-SEEEETSS---SS
T ss_pred CccCEEECCCCC-CCC
Confidence 467888888886 554
No 76
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=92.99 E-value=0.03 Score=48.84 Aligned_cols=67 Identities=15% Similarity=0.173 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhccccCCCCccccCCccCCccCCCC----HHHHHHHhcCCCccchhhhcccchhHHHhhhc
Q 017279 11 EDLNLCFEKMMMAGAGADRAGGVKMDGVVITEWKDIP----MELLLRILSLVDEPTVIVASGVCSGWRDAICL 79 (374)
Q Consensus 11 e~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Lp----~eil~~If~~L~~~~l~~~~~vc~~w~~~~~~ 79 (374)
|+..++.+.|..-+...... .-......+.+..|| +++...||+||+..+++.+..|||+|+.+...
T Consensus 45 dfv~~ll~~m~hyq~g~v~n--~~rpmLqrDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~d 115 (499)
T KOG0281|consen 45 DFVEHLISRMCHYQHGHINN--YLKPMLQRDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSD 115 (499)
T ss_pred hHHHHHHHHHhhhhhhHHHH--HHHHHHHHHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhcc
Confidence 55666666665554433210 111233567889999 99999999999999999999999999988643
No 77
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=92.67 E-value=0.24 Score=45.97 Aligned_cols=39 Identities=18% Similarity=0.220 Sum_probs=25.2
Q ss_pred ccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCcc
Q 017279 302 RYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLN 350 (374)
Q Consensus 302 ~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~ 350 (374)
+..+++|+.|++++ +.+++. +.+....+|+.|++++-..
T Consensus 251 ~~~l~~l~~L~~s~-n~i~~i---------~~~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 251 IGNLSNLETLDLSN-NQISSI---------SSLGSLTNLRELDLSGNSL 289 (394)
T ss_pred hccccccceecccc-cccccc---------ccccccCccCEEeccCccc
Confidence 33457788888888 455532 2235567888888887543
No 78
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=91.10 E-value=0.18 Score=41.12 Aligned_cols=127 Identities=19% Similarity=0.135 Sum_probs=75.1
Q ss_pred cEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCc
Q 017279 187 KILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLR 266 (374)
Q Consensus 187 ~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~ 266 (374)
+++++.+... .....+.....+...+++.+++... ...+.++++|.+|.+.+ +.|+... ..+....|+|+
T Consensus 22 ~e~~LR~lki----p~ienlg~~~d~~d~iDLtdNdl~~----l~~lp~l~rL~tLll~n-NrIt~I~-p~L~~~~p~l~ 91 (233)
T KOG1644|consen 22 RELDLRGLKI----PVIENLGATLDQFDAIDLTDNDLRK----LDNLPHLPRLHTLLLNN-NRITRID-PDLDTFLPNLK 91 (233)
T ss_pred cccccccccc----cchhhccccccccceecccccchhh----cccCCCccccceEEecC-Ccceeec-cchhhhccccc
Confidence 4556655321 2222344445677778887644221 22234678899999998 4565322 23444578999
Q ss_pred eEecCCCCCCCH-HHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCH--HHHHHHHhhCCCccCCCCCceE
Q 017279 267 SLGLYYCRNITD-RAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTP--PAVQALCDTFPALHTCSGRHSL 343 (374)
Q Consensus 267 ~L~l~~~~~i~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~l~~l~~~~~~l~~~~~L~~L 343 (374)
.|.+.++. +.. ..+..++ .+|+|++|.+-++ .++. .+..- -+...|+|+.|
T Consensus 92 ~L~LtnNs-i~~l~dl~pLa------------------~~p~L~~Ltll~N-pv~~k~~YR~y------vl~klp~l~~L 145 (233)
T KOG1644|consen 92 TLILTNNS-IQELGDLDPLA------------------SCPKLEYLTLLGN-PVEHKKNYRLY------VLYKLPSLRTL 145 (233)
T ss_pred eEEecCcc-hhhhhhcchhc------------------cCCccceeeecCC-chhcccCceeE------EEEecCcceEe
Confidence 99998875 332 2233333 4589999999884 3432 11111 13578999999
Q ss_pred EecCCc
Q 017279 344 VMSGCL 349 (374)
Q Consensus 344 ~ls~C~ 349 (374)
|+.+-.
T Consensus 146 DF~kVt 151 (233)
T KOG1644|consen 146 DFQKVT 151 (233)
T ss_pred ehhhhh
Confidence 997543
No 79
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=89.31 E-value=0.32 Score=45.12 Aligned_cols=170 Identities=24% Similarity=0.266 Sum_probs=77.9
Q ss_pred CCCcEEEeeCCCCCCChHHHHHHHHhC-CCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcC
Q 017279 105 TKLQTLVLRQDKPQLEDNAVEAIANSC-HDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFC 183 (374)
Q Consensus 105 ~~L~~L~l~~~~~~~~~~~~~~l~~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~ 183 (374)
+.++.+.+. ...+++.. ...... ++|+.|+++.+ .+.... .. ...+++|+.|+++++ .+.+ ++......
T Consensus 116 ~~l~~L~l~--~n~i~~i~--~~~~~~~~nL~~L~l~~N-~i~~l~-~~-~~~l~~L~~L~l~~N-~l~~--l~~~~~~~ 185 (394)
T COG4886 116 TNLTSLDLD--NNNITDIP--PLIGLLKSNLKELDLSDN-KIESLP-SP-LRNLPNLKNLDLSFN-DLSD--LPKLLSNL 185 (394)
T ss_pred cceeEEecC--CcccccCc--cccccchhhccccccccc-chhhhh-hh-hhccccccccccCCc-hhhh--hhhhhhhh
Confidence 456666665 33333211 111223 26777777664 222210 11 233677777777663 3332 22222245
Q ss_pred CCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCC
Q 017279 184 RKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCP 263 (374)
Q Consensus 184 ~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~ 263 (374)
+.|+.|++++.. + ..+.........|++|.+++...+.. ........++..|.+.++ .+.+ +......++
T Consensus 186 ~~L~~L~ls~N~--i--~~l~~~~~~~~~L~~l~~~~N~~~~~---~~~~~~~~~l~~l~l~~n-~~~~--~~~~~~~l~ 255 (394)
T COG4886 186 SNLNNLDLSGNK--I--SDLPPEIELLSALEELDLSNNSIIEL---LSSLSNLKNLSGLELSNN-KLED--LPESIGNLS 255 (394)
T ss_pred hhhhheeccCCc--c--ccCchhhhhhhhhhhhhhcCCcceec---chhhhhcccccccccCCc-eeee--ccchhcccc
Confidence 677777776632 1 22222222234466666665421111 111223445555555542 2221 012222356
Q ss_pred CCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCC
Q 017279 264 HLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQ 315 (374)
Q Consensus 264 ~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 315 (374)
.++.|+++.+. +++... +. ...+|+.|++++
T Consensus 256 ~l~~L~~s~n~-i~~i~~--~~------------------~~~~l~~L~~s~ 286 (394)
T COG4886 256 NLETLDLSNNQ-ISSISS--LG------------------SLTNLRELDLSG 286 (394)
T ss_pred ccceecccccc-cccccc--cc------------------ccCccCEEeccC
Confidence 67777776664 332111 22 347888888877
No 80
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=89.00 E-value=0.13 Score=48.15 Aligned_cols=102 Identities=25% Similarity=0.328 Sum_probs=44.0
Q ss_pred CCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCH-HHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhc
Q 017279 131 CHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSD-HALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRN 209 (374)
Q Consensus 131 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~-~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~ 209 (374)
+.+|+.|++.++ .+.. +......+++|+.|++++ +.+.. .++. .++.|+.|++.++. +. .+..+. .
T Consensus 94 ~~~l~~l~l~~n-~i~~--i~~~l~~~~~L~~L~ls~-N~I~~i~~l~----~l~~L~~L~l~~N~--i~--~~~~~~-~ 160 (414)
T KOG0531|consen 94 LKSLEALDLYDN-KIEK--IENLLSSLVNLQVLDLSF-NKITKLEGLS----TLTLLKELNLSGNL--IS--DISGLE-S 160 (414)
T ss_pred ccceeeeecccc-chhh--cccchhhhhcchheeccc-cccccccchh----hccchhhheeccCc--ch--hccCCc-c
Confidence 456666666664 2211 112122356666666665 23322 1122 23446666666532 21 111111 1
Q ss_pred CCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCC
Q 017279 210 CNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGC 247 (374)
Q Consensus 210 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 247 (374)
++.|+.++++++. +....-.. ...+.+++.+.+.++
T Consensus 161 l~~L~~l~l~~n~-i~~ie~~~-~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 161 LKSLKLLDLSYNR-IVDIENDE-LSELISLEELDLGGN 196 (414)
T ss_pred chhhhcccCCcch-hhhhhhhh-hhhccchHHHhccCC
Confidence 4555556665532 22211100 234556666666663
No 81
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=86.02 E-value=1.4 Score=41.63 Aligned_cols=43 Identities=26% Similarity=0.244 Sum_probs=20.8
Q ss_pred HHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCC
Q 017279 204 QAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCG 246 (374)
Q Consensus 204 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 246 (374)
..+..+.|.+..++++++.-..-..+..+....|+|+.|+|++
T Consensus 211 ~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~ 253 (585)
T KOG3763|consen 211 KHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSH 253 (585)
T ss_pred HHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeeccc
Confidence 3344455555555555443222233444444555555555555
No 82
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=85.41 E-value=1.5 Score=23.21 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=20.5
Q ss_pred CCCcEEecCCCCCCCHHHHHHHHhhC
Q 017279 306 EGLQSLNISQCTALTPPAVQALCDTF 331 (374)
Q Consensus 306 ~~L~~L~l~~~~~l~~~~l~~l~~~~ 331 (374)
++|++|+|++ +.+.+.+...+++.+
T Consensus 2 ~~L~~LdL~~-N~i~~~G~~~L~~~L 26 (28)
T smart00368 2 PSLRELDLSN-NKLGDEGARALAEAL 26 (28)
T ss_pred CccCEEECCC-CCCCHHHHHHHHHHh
Confidence 6899999998 689998888877543
No 83
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=84.53 E-value=0.56 Score=23.19 Aligned_cols=14 Identities=50% Similarity=0.479 Sum_probs=11.3
Q ss_pred CCceEEecCCccccc
Q 017279 339 GRHSLVMSGCLNLTS 353 (374)
Q Consensus 339 ~L~~L~ls~C~~l~~ 353 (374)
+|+.|++++| +++.
T Consensus 1 ~L~~Ldls~n-~l~~ 14 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTS 14 (22)
T ss_dssp TESEEEETSS-EESE
T ss_pred CccEEECCCC-cCEe
Confidence 5789999999 6774
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=83.76 E-value=2.5 Score=39.99 Aligned_cols=91 Identities=21% Similarity=0.139 Sum_probs=60.3
Q ss_pred HHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCC--CCCCHHHHHHHHhcCCCCCeeecCCCCCCC--
Q 017279 176 LAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWC--EDVGDVGVMNLAYGCPDLRSLDLCGCVCIT-- 251 (374)
Q Consensus 176 ~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~--~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~-- 251 (374)
+..+....|.+..+.|++... ..-+.+..++...|+|..|+|+++ ....+..+..+ +...|++|-+.|++-.+
T Consensus 210 L~~~~~n~p~i~sl~lsnNrL-~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 210 LKHIEENFPEILSLSLSNNRL-YHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred HHHhhcCCcceeeeecccchh-hchhhhhHHHHhcchhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCccccch
Confidence 344556788899999887442 344667778888999999999986 21122222222 34678999999954222
Q ss_pred ---HHHHHHHHhcCCCCceEe
Q 017279 252 ---DDSVIALANGCPHLRSLG 269 (374)
Q Consensus 252 ---~~~l~~l~~~~~~L~~L~ 269 (374)
.+-+..+.+.+|+|..|+
T Consensus 287 ~~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 287 SDRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred hhhHHHHHHHHHhcchheeec
Confidence 233566777799998886
No 85
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=78.75 E-value=0.73 Score=44.40 Aligned_cols=41 Identities=27% Similarity=0.418 Sum_probs=37.7
Q ss_pred CccCCccCCCCHHHHHHHhcCCCccchhhhcccchhHHHhh
Q 017279 37 GVVITEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAI 77 (374)
Q Consensus 37 ~~~~~~~~~Lp~eil~~If~~L~~~~l~~~~~vc~~w~~~~ 77 (374)
....+.+..||.|+...||.+|+.++++.+++||+.|+...
T Consensus 102 ~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~ 142 (537)
T KOG0274|consen 102 LGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLL 142 (537)
T ss_pred ccccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhh
Confidence 45678899999999999999999999999999999999875
No 86
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=78.25 E-value=1.2 Score=31.92 Aligned_cols=27 Identities=19% Similarity=0.417 Sum_probs=23.7
Q ss_pred CCccCCCCHHHHHHHhcCCCccchhhh
Q 017279 40 ITEWKDIPMELLLRILSLVDEPTVIVA 66 (374)
Q Consensus 40 ~~~~~~Lp~eil~~If~~L~~~~l~~~ 66 (374)
...|..||.|+-..|+++|+..|+..+
T Consensus 69 ~~~w~~LP~EIk~~Il~~L~~~dL~~l 95 (97)
T PF09372_consen 69 NNYWNILPIEIKYKILEYLSNKDLKKL 95 (97)
T ss_pred CCchhhCCHHHHHHHHHcCCHHHHHHH
Confidence 478999999999999999999887643
No 87
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=78.09 E-value=1 Score=34.56 Aligned_cols=11 Identities=36% Similarity=0.217 Sum_probs=5.7
Q ss_pred CCCCcEEEcCC
Q 017279 183 CRKLKILNLCG 193 (374)
Q Consensus 183 ~~~L~~L~L~~ 193 (374)
+|.|+.|+++.
T Consensus 99 m~aLr~lNl~~ 109 (177)
T KOG4579|consen 99 MPALRSLNLRF 109 (177)
T ss_pred hHHhhhccccc
Confidence 45555555554
No 88
>PF13013 F-box-like_2: F-box-like domain
Probab=76.15 E-value=1.4 Score=32.24 Aligned_cols=30 Identities=30% Similarity=0.594 Sum_probs=27.3
Q ss_pred ccCCCCHHHHHHHhcCCCccchhhhcccch
Q 017279 42 EWKDIPMELLLRILSLVDEPTVIVASGVCS 71 (374)
Q Consensus 42 ~~~~Lp~eil~~If~~L~~~~l~~~~~vc~ 71 (374)
.+.+||.|++..||.+-+..+...+...|+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 478899999999999999999888888888
No 89
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=74.67 E-value=1.6 Score=40.83 Aligned_cols=110 Identities=21% Similarity=0.162 Sum_probs=67.0
Q ss_pred hcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhc
Q 017279 208 RNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQS 287 (374)
Q Consensus 208 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~ 287 (374)
..+.+|+.|++.+.. +.. +......+++|++|+++++ .|+. +..+. .++.|+.|++.++. +.. +..
T Consensus 92 ~~~~~l~~l~l~~n~-i~~--i~~~l~~~~~L~~L~ls~N-~I~~--i~~l~-~l~~L~~L~l~~N~-i~~-----~~~- 157 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNK-IEK--IENLLSSLVNLQVLDLSFN-KITK--LEGLS-TLTLLKELNLSGNL-ISD-----ISG- 157 (414)
T ss_pred ccccceeeeeccccc-hhh--cccchhhhhcchheecccc-cccc--ccchh-hccchhhheeccCc-chh-----ccC-
Confidence 346788888887643 222 2232446789999999994 5542 22232 25568889888875 332 111
Q ss_pred CCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCccccc
Q 017279 288 GVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTS 353 (374)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~~ 353 (374)
+..+++|+.+++++ +.+++..-. + +..+++|+.+.+.+...-+.
T Consensus 158 --------------~~~l~~L~~l~l~~-n~i~~ie~~------~-~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 158 --------------LESLKSLKLLDLSY-NRIVDIEND------E-LSELISLEELDLGGNSIREI 201 (414)
T ss_pred --------------CccchhhhcccCCc-chhhhhhhh------h-hhhccchHHHhccCCchhcc
Confidence 11247899999988 445432221 1 25678889999888864443
No 90
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=73.63 E-value=1.7 Score=33.42 Aligned_cols=85 Identities=24% Similarity=0.281 Sum_probs=54.1
Q ss_pred CCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCC
Q 017279 184 RKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCP 263 (374)
Q Consensus 184 ~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~ 263 (374)
..+..++|+.|..-.-.+..-.+. ...+|+..+++++. +.+ ....+...+|.++.|++++ +.+++...+ +. .+|
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~-~~~el~~i~ls~N~-fk~-fp~kft~kf~t~t~lNl~~-neisdvPeE-~A-am~ 100 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLS-KGYELTKISLSDNG-FKK-FPKKFTIKFPTATTLNLAN-NEISDVPEE-LA-AMP 100 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHh-CCceEEEEecccch-hhh-CCHHHhhccchhhhhhcch-hhhhhchHH-Hh-hhH
Confidence 356778888876311223333333 35678888888743 322 1235556678899999998 567655444 44 488
Q ss_pred CCceEecCCCC
Q 017279 264 HLRSLGLYYCR 274 (374)
Q Consensus 264 ~L~~L~l~~~~ 274 (374)
.|+.|++.+++
T Consensus 101 aLr~lNl~~N~ 111 (177)
T KOG4579|consen 101 ALRSLNLRFNP 111 (177)
T ss_pred HhhhcccccCc
Confidence 99999999886
No 91
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=69.72 E-value=1.5 Score=38.42 Aligned_cols=30 Identities=13% Similarity=-0.012 Sum_probs=24.9
Q ss_pred CCcCHHHHHHHHHHHH-----HhccccCCCCcccc
Q 017279 6 TNLSSEDLNLCFEKMM-----MAGAGADRAGGVKM 35 (374)
Q Consensus 6 ~~lp~e~~~~i~~~l~-----~~~~~~~~~~~~~~ 35 (374)
..|||||+..||.++. ..++.+++.||...
T Consensus 108 ~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F 142 (366)
T KOG2997|consen 108 SVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGF 142 (366)
T ss_pred hhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHH
Confidence 3699999999999966 48888899999544
No 92
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=65.37 E-value=5.2 Score=20.75 Aligned_cols=7 Identities=29% Similarity=0.501 Sum_probs=2.7
Q ss_pred CEEecCC
Q 017279 135 QDLDLSK 141 (374)
Q Consensus 135 ~~L~l~~ 141 (374)
++|.|..
T Consensus 3 KtL~L~~ 9 (26)
T PF07723_consen 3 KTLHLDS 9 (26)
T ss_pred eEEEeeE
Confidence 3333333
No 93
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=54.29 E-value=4.9 Score=36.66 Aligned_cols=29 Identities=14% Similarity=0.028 Sum_probs=26.3
Q ss_pred cCCCcCHHHHHHHHHHH-HHhccccCCCCc
Q 017279 4 EATNLSSEDLNLCFEKM-MMAGAGADRAGG 32 (374)
Q Consensus 4 ~~~~lp~e~~~~i~~~l-~~~~~~~~~~~~ 32 (374)
.|+.||+|++..|...| ...|..+.+.||
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC 32 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSIC 32 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhh
Confidence 36799999999999999 788999999999
No 94
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=53.43 E-value=1.4 Score=38.97 Aligned_cols=41 Identities=15% Similarity=-0.094 Sum_probs=31.2
Q ss_pred CCcC----HHHHHHHHHHHHHhccccCCCCc--cccCCccCCccCCC
Q 017279 6 TNLS----SEDLNLCFEKMMMAGAGADRAGG--VKMDGVVITEWKDI 46 (374)
Q Consensus 6 ~~lp----~e~~~~i~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~L 46 (374)
+.|| +|+-+.||+|||..+++.|-.|| |...-.+.-.|..|
T Consensus 76 ~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkL 122 (499)
T KOG0281|consen 76 TALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKL 122 (499)
T ss_pred HhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHH
Confidence 4689 99999999999999999998888 54444444445433
No 95
>PHA02875 ankyrin repeat protein; Provisional
Probab=37.00 E-value=19 Score=33.47 Aligned_cols=27 Identities=22% Similarity=0.455 Sum_probs=23.9
Q ss_pred CCccCCCCHHHHHHHhcCCCccchhhh
Q 017279 40 ITEWKDIPMELLLRILSLVDEPTVIVA 66 (374)
Q Consensus 40 ~~~~~~Lp~eil~~If~~L~~~~l~~~ 66 (374)
...|..||.|+-..|+++|+..|+..+
T Consensus 384 ~~~w~~LP~Eik~~Il~~l~~~dL~~~ 410 (413)
T PHA02875 384 ESKWNILPHEIKYLILEKIGNKDIDIA 410 (413)
T ss_pred ccchhcCcHHHHHHHHHHhccchhhhh
Confidence 578999999999999999999987654
No 96
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=36.01 E-value=1.3e+02 Score=27.04 Aligned_cols=101 Identities=16% Similarity=0.143 Sum_probs=67.0
Q ss_pred HHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhc---CCCCCeeecCCCCCCCH--HHHHHHHhcCCCCceEecCCCC
Q 017279 200 DYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYG---CPDLRSLDLCGCVCITD--DSVIALANGCPHLRSLGLYYCR 274 (374)
Q Consensus 200 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~---~~~L~~L~l~~~~~l~~--~~l~~l~~~~~~L~~L~l~~~~ 274 (374)
...+..+-.+-+.++..++.+...+..+.+..+... ....+...+.+...-.. -++..+++-++.|++|+++++.
T Consensus 187 e~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnF 266 (353)
T KOG3735|consen 187 ESSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNF 266 (353)
T ss_pred HHHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccc
Confidence 445566666778999999988887887777666544 34566666666332222 2334455568889999999885
Q ss_pred CCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCC
Q 017279 275 NITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQ 315 (374)
Q Consensus 275 ~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 315 (374)
|+..++.++..... .-.+|.++.+.+
T Consensus 267 -Itg~gi~a~~~al~--------------~n~tl~el~~dn 292 (353)
T KOG3735|consen 267 -ITGLGIMALLRALQ--------------SNKSLTELKNDN 292 (353)
T ss_pred -cccHHHHHHHHHHh--------------ccchhhHhhhhh
Confidence 89888877654421 115777777765
No 97
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=35.39 E-value=36 Score=17.12 Aligned_cols=10 Identities=30% Similarity=0.584 Sum_probs=6.8
Q ss_pred CCCcEEecCC
Q 017279 306 EGLQSLNISQ 315 (374)
Q Consensus 306 ~~L~~L~l~~ 315 (374)
++|+.|++++
T Consensus 2 ~~L~~L~L~~ 11 (26)
T smart00369 2 PNLRELDLSN 11 (26)
T ss_pred CCCCEEECCC
Confidence 5677777766
No 98
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=35.39 E-value=36 Score=17.12 Aligned_cols=10 Identities=30% Similarity=0.584 Sum_probs=6.8
Q ss_pred CCCcEEecCC
Q 017279 306 EGLQSLNISQ 315 (374)
Q Consensus 306 ~~L~~L~l~~ 315 (374)
++|+.|++++
T Consensus 2 ~~L~~L~L~~ 11 (26)
T smart00370 2 PNLRELDLSN 11 (26)
T ss_pred CCCCEEECCC
Confidence 5677777766
No 99
>PHA03100 ankyrin repeat protein; Provisional
Probab=34.11 E-value=21 Score=34.00 Aligned_cols=29 Identities=21% Similarity=0.386 Sum_probs=24.8
Q ss_pred CCccCCCCHHHHHHHhcCCCccchhhhcc
Q 017279 40 ITEWKDIPMELLLRILSLVDEPTVIVASG 68 (374)
Q Consensus 40 ~~~~~~Lp~eil~~If~~L~~~~l~~~~~ 68 (374)
...|..||.||...|+++|+..|+..+..
T Consensus 445 ~~~w~~lP~Eik~~Il~~l~~~dl~~~~~ 473 (480)
T PHA03100 445 NTYWNILPIEIKYKILEYLSNRDLKSLIE 473 (480)
T ss_pred CCchhhCcHHHHHHHHHhCCHHHHHHHHh
Confidence 35899999999999999999998866544
No 100
>PF03382 DUF285: Mycoplasma protein of unknown function, DUF285; InterPro: IPR005046 This is a family proteins of unknown function. Many contain a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, Listeria innocua, Enterococcus faecalis (Streptococcus faecalis), Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=33.81 E-value=23 Score=26.43 Aligned_cols=6 Identities=33% Similarity=0.971 Sum_probs=2.2
Q ss_pred CCCCCE
Q 017279 210 CNQLQS 215 (374)
Q Consensus 210 ~~~L~~ 215 (374)
++.|..
T Consensus 60 ~~~l~~ 65 (120)
T PF03382_consen 60 CSSLNQ 65 (120)
T ss_pred hhhcCC
Confidence 333333
No 101
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=32.26 E-value=52 Score=28.45 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=31.7
Q ss_pred cCCccCCCCHHHHHHHhcCC-CccchhhhcccchhHHHh
Q 017279 39 VITEWKDIPMELLLRILSLV-DEPTVIVASGVCSGWRDA 76 (374)
Q Consensus 39 ~~~~~~~Lp~eil~~If~~L-~~~~l~~~~~vc~~w~~~ 76 (374)
....+.+||.|+...|+..+ +.+|+..+++|-...+..
T Consensus 198 ~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l 236 (332)
T KOG3926|consen 198 AGLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKL 236 (332)
T ss_pred CCCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHH
Confidence 46688999999999999988 788999999987765543
No 102
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=30.69 E-value=49 Score=17.14 Aligned_cols=14 Identities=29% Similarity=0.551 Sum_probs=9.4
Q ss_pred CCCcEEecCCCCCCC
Q 017279 306 EGLQSLNISQCTALT 320 (374)
Q Consensus 306 ~~L~~L~l~~~~~l~ 320 (374)
++|+.|++++ +.++
T Consensus 2 ~~L~~L~L~~-NkI~ 15 (26)
T smart00365 2 TNLEELDLSQ-NKIK 15 (26)
T ss_pred CccCEEECCC-Cccc
Confidence 5778888877 4443
No 103
>PHA02878 ankyrin repeat protein; Provisional
Probab=27.75 E-value=30 Score=33.05 Aligned_cols=27 Identities=22% Similarity=0.514 Sum_probs=23.7
Q ss_pred CCccCCCCHHHHHHHhcCCCccchhhh
Q 017279 40 ITEWKDIPMELLLRILSLVDEPTVIVA 66 (374)
Q Consensus 40 ~~~~~~Lp~eil~~If~~L~~~~l~~~ 66 (374)
...|..||.||-..|+++|+..|+..+
T Consensus 444 ~~~w~~lP~Eik~~Il~~l~~~dl~~~ 470 (477)
T PHA02878 444 NYMWNRLPLEIKHYIMELLDDASLCNM 470 (477)
T ss_pred cCcHhhCCHHHHHHHHHHcCcHHHHHH
Confidence 468999999999999999999987553
No 104
>PHA02989 ankyrin repeat protein; Provisional
Probab=27.67 E-value=31 Score=33.13 Aligned_cols=29 Identities=17% Similarity=0.312 Sum_probs=25.1
Q ss_pred CCccCCCCHHHHHHHhcCCCccchhhhcc
Q 017279 40 ITEWKDIPMELLLRILSLVDEPTVIVASG 68 (374)
Q Consensus 40 ~~~~~~Lp~eil~~If~~L~~~~l~~~~~ 68 (374)
...|..||.|+...|+++|+..|+..+..
T Consensus 456 ~~~w~~LP~Eik~~Il~~L~~~dl~~i~~ 484 (494)
T PHA02989 456 KNYWMYLPIEIQINILEYLTFSDFKTILK 484 (494)
T ss_pred ccHHHhCCHHHHHHHHHcCCHHHHHHHHh
Confidence 47899999999999999999999866544
No 105
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=27.51 E-value=44 Score=29.95 Aligned_cols=37 Identities=32% Similarity=0.732 Sum_probs=31.2
Q ss_pred CccCCCCHHHHHHHhcCCC--------ccchhhhcccchhHHHhh
Q 017279 41 TEWKDIPMELLLRILSLVD--------EPTVIVASGVCSGWRDAI 77 (374)
Q Consensus 41 ~~~~~Lp~eil~~If~~L~--------~~~l~~~~~vc~~w~~~~ 77 (374)
..|..||.+.+..++...+ .+..+.++-||+.|++.+
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~ 87 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREIS 87 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhc
Confidence 6899999999999999873 235688999999999864
No 106
>PF11900 DUF3420: Domain of unknown function (DUF3420); InterPro: IPR024228 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes and is about 50 amino acids in length.
Probab=23.11 E-value=54 Score=20.13 Aligned_cols=17 Identities=12% Similarity=0.018 Sum_probs=12.9
Q ss_pred CcCCCcCHHHHHHHHHH
Q 017279 3 GEATNLSSEDLNLCFEK 19 (374)
Q Consensus 3 ~~~~~lp~e~~~~i~~~ 19 (374)
..++.||.||..+|-+-
T Consensus 6 ~LeK~LP~eVv~kIk~l 22 (49)
T PF11900_consen 6 SLEKELPPEVVKKIKDL 22 (49)
T ss_pred hhhccCCHHHHHHHHHH
Confidence 45678999999888654
No 107
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=23.10 E-value=2.7e+02 Score=25.13 Aligned_cols=96 Identities=20% Similarity=0.211 Sum_probs=43.8
Q ss_pred HHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhc---CCCCcEEEcCCCccCccHH---HHHHHHhcCCCCCEEeccCC
Q 017279 148 RSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGF---CRKLKILNLCGCVKAATDY---ALQAIGRNCNQLQSLNLGWC 221 (374)
Q Consensus 148 ~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~---~~~L~~L~L~~~~~~~~~~---~~~~l~~~~~~L~~L~l~~~ 221 (374)
..+..+...=++|+..++.+...++...+..+... -...+.+.+.+.. .++. .+....+-++.|++|++.++
T Consensus 188 ~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr--~~d~vA~a~a~ml~~n~sl~slnvesn 265 (353)
T KOG3735|consen 188 SSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTR--SSDPVAFAIAEMLKENKSLTSLNVESN 265 (353)
T ss_pred HHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhccc--CCchhHHHHHHHHhhcchhhheecccc
Confidence 34444444445555555555444444433333221 2233444444322 1211 22223445666777777663
Q ss_pred CCCCHHHHHHHHhcC---CCCCeeecCC
Q 017279 222 EDVGDVGVMNLAYGC---PDLRSLDLCG 246 (374)
Q Consensus 222 ~~~~~~~~~~l~~~~---~~L~~L~l~~ 246 (374)
.+++.++.++...+ .+|..+.+.+
T Consensus 266 -FItg~gi~a~~~al~~n~tl~el~~dn 292 (353)
T KOG3735|consen 266 -FITGLGIMALLRALQSNKSLTELKNDN 292 (353)
T ss_pred -ccccHHHHHHHHHHhccchhhHhhhhh
Confidence 36666665554432 3444444444
No 108
>PHA02798 ankyrin-like protein; Provisional
Probab=22.49 E-value=47 Score=31.82 Aligned_cols=27 Identities=19% Similarity=0.511 Sum_probs=23.3
Q ss_pred cCCccCCCCHHHHHHHhcCCCccchhh
Q 017279 39 VITEWKDIPMELLLRILSLVDEPTVIV 65 (374)
Q Consensus 39 ~~~~~~~Lp~eil~~If~~L~~~~l~~ 65 (374)
....|..||.||-..|+++|+..|+..
T Consensus 460 ~~~~w~~lP~Eik~~Il~~L~~~dl~~ 486 (489)
T PHA02798 460 ELSYWNYIPNEIKFKIINNLSNNDILE 486 (489)
T ss_pred CcchhhhCCHHHHHHHHHcCChHHHHH
Confidence 347899999999999999999888643
No 109
>PF07735 FBA_2: F-box associated; InterPro: IPR012885 This domain is found is found towards the C terminus of proteins that contain an F-box, IPR001810 from INTERPRO, suggesting that they are effectors linked with ubiquitination.
Probab=20.56 E-value=2.5e+02 Score=18.13 Aligned_cols=36 Identities=6% Similarity=0.095 Sum_probs=17.2
Q ss_pred CcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEe
Q 017279 308 LQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVM 345 (374)
Q Consensus 308 L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~l 345 (374)
=+.+.+.+ ..+++..+..+....-. +..|+|+.+.+
T Consensus 34 c~~i~l~~-~~~t~~dln~Flk~W~~-G~~~~Le~l~i 69 (70)
T PF07735_consen 34 CKKIELWN-SKFTNEDLNKFLKHWIN-GSNPRLEYLEI 69 (70)
T ss_pred CCEEEEEC-CCCCHHHHHHHHHHHHc-CCCcCCcEEEE
Confidence 34444444 44565555555432111 24556666554
Done!