Query 017279
Match_columns 374
No_of_seqs 186 out of 2386
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 11:53:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017279.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017279hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ast_B S-phase kinase-associat 100.0 4.4E-30 1.5E-34 231.7 19.1 281 39-357 5-289 (336)
2 2p1m_B Transport inhibitor res 100.0 5.1E-27 1.7E-31 227.7 21.4 179 40-221 3-221 (594)
3 2ast_B S-phase kinase-associat 99.9 8E-26 2.7E-30 203.8 17.1 300 4-357 8-311 (336)
4 3ogk_B Coronatine-insensitive 99.9 1.5E-25 5E-30 217.4 17.2 175 43-220 13-229 (592)
5 2p1m_B Transport inhibitor res 99.9 1.6E-23 5.5E-28 203.1 20.9 30 3-32 4-34 (594)
6 3ogk_B Coronatine-insensitive 99.9 7.5E-24 2.6E-28 205.4 15.6 27 6-32 14-41 (592)
7 2ca6_A RAN GTPase-activating p 99.7 1E-15 3.5E-20 140.2 24.5 253 79-355 32-319 (386)
8 1z7x_W Ribonuclease inhibitor; 99.7 5.2E-16 1.8E-20 145.6 21.9 252 78-356 27-301 (461)
9 1z7x_W Ribonuclease inhibitor; 99.7 1.1E-15 3.9E-20 143.3 23.2 249 79-355 56-329 (461)
10 2ca6_A RAN GTPase-activating p 99.7 3.2E-15 1.1E-19 137.0 22.8 231 99-354 26-289 (386)
11 3goz_A Leucine-rich repeat-con 99.6 3.3E-14 1.1E-18 129.0 17.7 248 80-354 23-299 (362)
12 3goz_A Leucine-rich repeat-con 99.5 3.6E-13 1.2E-17 122.2 19.7 228 96-349 13-264 (362)
13 3un9_A NLR family member X1; l 99.4 6.4E-12 2.2E-16 113.9 19.4 175 104-287 71-262 (372)
14 4fmz_A Internalin; leucine ric 99.4 7.3E-13 2.5E-17 119.4 12.7 203 131-365 131-337 (347)
15 3un9_A NLR family member X1; l 99.4 1.6E-11 5.6E-16 111.2 20.5 194 77-279 70-285 (372)
16 4fmz_A Internalin; leucine ric 99.4 1.8E-12 6E-17 116.8 11.8 215 79-349 110-344 (347)
17 3e4g_A ATP synthase subunit S, 99.4 1.4E-13 4.9E-18 109.3 4.0 72 212-285 62-136 (176)
18 3e4g_A ATP synthase subunit S, 99.4 6.3E-13 2.2E-17 105.6 5.5 92 185-280 62-156 (176)
19 3v47_A TOLL-like receptor 5B a 99.2 2.5E-13 8.5E-18 127.1 -2.6 110 80-195 55-165 (455)
20 4fcg_A Uncharacterized protein 99.2 1.5E-13 5E-18 122.9 -4.8 59 210-274 182-240 (328)
21 3v47_A TOLL-like receptor 5B a 99.2 1.2E-12 4E-17 122.5 0.3 250 79-349 79-406 (455)
22 2z80_A TOLL-like receptor 2, v 99.2 1.2E-12 4.1E-17 118.3 -1.2 233 80-350 77-313 (353)
23 4fcg_A Uncharacterized protein 99.2 3.1E-13 1.1E-17 120.8 -6.1 222 79-347 81-310 (328)
24 1o6v_A Internalin A; bacterial 99.2 1.6E-10 5.3E-15 108.4 11.8 210 101-349 173-386 (466)
25 1ozn_A Reticulon 4 receptor; N 99.2 5.6E-13 1.9E-17 116.7 -4.7 207 104-350 31-237 (285)
26 1h6u_A Internalin H; cell adhe 99.1 3.5E-11 1.2E-15 106.4 6.4 168 130-349 61-228 (308)
27 1o6v_A Internalin A; bacterial 99.1 4.4E-10 1.5E-14 105.4 14.0 231 79-354 134-368 (466)
28 2z66_A Variable lymphocyte rec 99.1 5.8E-14 2E-18 124.4 -11.9 228 80-349 29-259 (306)
29 1wwl_A Monocyte differentiatio 99.1 6E-12 2.1E-16 111.6 0.7 209 103-353 93-310 (312)
30 3zyj_A Leucine-rich repeat-con 99.1 2.9E-13 9.9E-18 126.1 -8.8 225 81-349 66-290 (440)
31 3zyi_A Leucine-rich repeat-con 99.1 3.1E-13 1.1E-17 126.3 -8.5 226 80-349 76-301 (452)
32 1ogq_A PGIP-2, polygalacturona 99.1 1.6E-14 5.4E-19 128.4 -16.8 234 73-349 38-279 (313)
33 3rgz_A Protein brassinosteroid 99.1 2.4E-12 8.1E-17 128.3 -3.2 37 304-349 267-305 (768)
34 3t6q_A CD180 antigen; protein- 99.1 3E-13 1E-17 131.3 -10.1 14 335-348 497-510 (606)
35 3rgz_A Protein brassinosteroid 99.1 1.2E-12 4.2E-17 130.3 -6.7 177 80-273 101-279 (768)
36 1xku_A Decorin; proteoglycan, 99.1 7.3E-12 2.5E-16 112.0 -1.2 108 102-221 73-181 (330)
37 1ozn_A Reticulon 4 receptor; N 99.1 5.7E-13 2E-17 116.6 -8.2 204 80-317 33-236 (285)
38 3o6n_A APL1; leucine-rich repe 99.1 6.5E-12 2.2E-16 115.1 -1.7 50 305-366 317-366 (390)
39 4glp_A Monocyte differentiatio 99.1 5.1E-11 1.7E-15 105.5 3.8 204 104-349 90-305 (310)
40 3t6q_A CD180 antigen; protein- 99.1 1.2E-12 4.1E-17 127.0 -7.6 108 79-194 278-386 (606)
41 2z66_A Variable lymphocyte rec 99.1 3.7E-13 1.3E-17 119.1 -10.7 210 104-354 27-238 (306)
42 2id5_A Lingo-1, leucine rich r 99.0 1.3E-12 4.6E-17 122.9 -7.8 40 302-349 292-331 (477)
43 1io0_A Tropomodulin; LRR prote 99.0 9.1E-09 3.1E-13 83.6 16.0 133 201-354 26-166 (185)
44 1wwl_A Monocyte differentiatio 99.0 9.1E-12 3.1E-16 110.5 -2.2 207 78-320 94-309 (312)
45 3oja_B Anopheles plasmodium-re 99.0 7.5E-12 2.6E-16 121.1 -3.1 39 234-274 251-289 (597)
46 3bz5_A Internalin-J, INLJ; leu 99.0 1.8E-10 6.1E-15 107.5 6.3 161 79-274 42-202 (457)
47 3o53_A Protein LRIM1, AGAP0063 99.0 7E-12 2.4E-16 111.5 -3.9 56 80-142 35-90 (317)
48 2z81_A CD282 antigen, TOLL-lik 99.0 6.9E-11 2.4E-15 113.2 2.7 84 79-168 50-133 (549)
49 2id5_A Lingo-1, leucine rich r 99.0 2.1E-12 7.3E-17 121.5 -8.0 232 79-354 80-311 (477)
50 3vq2_A TLR4, TOLL-like recepto 99.0 8.3E-13 2.8E-17 128.1 -11.3 39 302-350 517-557 (606)
51 3o6n_A APL1; leucine-rich repe 99.0 9.7E-12 3.3E-16 113.9 -3.7 108 79-195 69-176 (390)
52 2z80_A TOLL-like receptor 2, v 99.0 6.8E-12 2.3E-16 113.3 -4.8 241 79-354 52-292 (353)
53 2z63_A TOLL-like receptor 4, v 99.0 1.1E-12 3.7E-17 126.3 -10.8 40 302-349 490-529 (570)
54 2ra8_A Uncharacterized protein 99.0 5.8E-10 2E-14 100.3 7.7 156 151-330 165-330 (362)
55 2z81_A CD282 antigen, TOLL-lik 99.0 3.5E-10 1.2E-14 108.3 6.3 199 104-351 309-510 (549)
56 3oja_A Leucine-rich immune mol 99.0 1.5E-11 5.1E-16 115.9 -3.4 213 80-349 35-248 (487)
57 1h6u_A Internalin H; cell adhe 99.0 7.9E-10 2.7E-14 97.7 7.8 172 131-355 40-211 (308)
58 1h6t_A Internalin B; cell adhe 99.0 4.4E-10 1.5E-14 98.5 5.8 35 305-349 177-211 (291)
59 1ogq_A PGIP-2, polygalacturona 99.0 5.8E-13 2E-17 118.2 -13.2 229 79-353 76-306 (313)
60 3vq2_A TLR4, TOLL-like recepto 99.0 6.1E-12 2.1E-16 122.0 -7.5 228 79-353 307-535 (606)
61 4ecn_A Leucine-rich repeat pro 99.0 3.8E-11 1.3E-15 119.8 -2.0 155 79-247 448-629 (876)
62 3zyj_A Leucine-rich repeat-con 98.9 3.9E-12 1.3E-16 118.4 -9.0 207 105-354 64-270 (440)
63 2ra8_A Uncharacterized protein 98.9 3.5E-09 1.2E-13 95.2 10.6 177 101-287 135-330 (362)
64 3zyi_A Leucine-rich repeat-con 98.9 7.4E-12 2.5E-16 117.0 -7.2 207 105-354 75-281 (452)
65 3oja_B Anopheles plasmodium-re 98.9 2.9E-11 1E-15 117.0 -3.3 244 79-354 75-339 (597)
66 3o53_A Protein LRIM1, AGAP0063 98.9 1.3E-10 4.4E-15 103.2 0.9 220 95-349 24-248 (317)
67 2z7x_B TOLL-like receptor 1, v 98.9 4.6E-10 1.6E-14 106.7 4.7 175 132-350 302-480 (520)
68 4ezg_A Putative uncharacterize 98.9 3E-10 1E-14 93.5 2.9 149 158-349 44-192 (197)
69 4eco_A Uncharacterized protein 98.9 1.1E-11 3.7E-16 120.8 -7.0 180 79-274 206-413 (636)
70 2z7x_B TOLL-like receptor 1, v 98.9 3.7E-10 1.3E-14 107.4 3.6 102 79-194 45-148 (520)
71 1xku_A Decorin; proteoglycan, 98.9 2.3E-11 7.8E-16 108.8 -5.0 221 104-355 51-279 (330)
72 3bz5_A Internalin-J, INLJ; leu 98.9 2.9E-10 9.8E-15 106.1 2.2 159 80-274 86-244 (457)
73 4eco_A Uncharacterized protein 98.9 1.1E-11 3.9E-16 120.6 -7.8 228 100-352 201-470 (636)
74 4ecn_A Leucine-rich repeat pro 98.9 3.7E-11 1.3E-15 119.9 -4.9 163 99-277 442-632 (876)
75 1m9s_A Internalin B; cell inva 98.9 1.6E-09 5.6E-14 104.2 6.5 145 103-273 41-185 (605)
76 1ziw_A TOLL-like receptor 3; i 98.9 2.4E-11 8.3E-16 119.4 -6.7 42 302-350 580-621 (680)
77 1ziw_A TOLL-like receptor 3; i 98.9 1.3E-10 4.3E-15 114.3 -2.3 40 302-349 268-307 (680)
78 2z62_A TOLL-like receptor 4, v 98.9 2.1E-11 7.3E-16 106.1 -7.1 203 105-348 28-234 (276)
79 1io0_A Tropomodulin; LRR prote 98.9 2.4E-07 8.3E-12 75.1 17.6 126 150-280 28-167 (185)
80 3oja_A Leucine-rich immune mol 98.9 1.7E-10 5.9E-15 108.6 -1.5 201 99-353 28-228 (487)
81 2ft3_A Biglycan; proteoglycan, 98.8 6.7E-11 2.3E-15 105.8 -4.6 45 303-349 261-305 (332)
82 3rfs_A Internalin B, repeat mo 98.8 9.2E-10 3.1E-14 95.5 2.3 194 103-348 39-232 (272)
83 4ezg_A Putative uncharacterize 98.8 1.2E-09 4E-14 89.9 2.2 142 182-363 42-183 (197)
84 3rfs_A Internalin B, repeat mo 98.8 1.4E-10 4.8E-15 100.7 -4.3 14 335-348 202-215 (272)
85 3j0a_A TOLL-like receptor 5; m 98.8 2.6E-11 9E-16 122.0 -10.3 14 335-348 335-348 (844)
86 1fs1_A SKP2 F-BOX, cyclin A/CD 98.8 5.2E-09 1.8E-13 65.8 3.9 41 39-79 5-45 (53)
87 2z63_A TOLL-like receptor 4, v 98.8 1.4E-11 4.7E-16 118.6 -12.5 185 131-354 324-509 (570)
88 2o6q_A Variable lymphocyte rec 98.8 4.2E-10 1.4E-14 97.5 -2.0 155 105-273 37-191 (270)
89 4glp_A Monocyte differentiatio 98.7 1.1E-08 3.7E-13 90.4 6.8 224 104-364 63-297 (310)
90 2ft3_A Biglycan; proteoglycan, 98.7 3.8E-11 1.3E-15 107.4 -9.9 224 80-355 55-280 (332)
91 2je0_A Acidic leucine-rich nuc 98.7 4.3E-09 1.5E-13 82.3 3.0 130 132-271 17-148 (149)
92 2je0_A Acidic leucine-rich nuc 98.7 3.1E-09 1.1E-13 83.1 2.1 131 157-315 16-149 (149)
93 2z62_A TOLL-like receptor 4, v 98.7 6E-11 2E-15 103.2 -8.9 202 80-316 29-234 (276)
94 2xwt_C Thyrotropin receptor; s 98.7 3.6E-11 1.2E-15 102.3 -10.3 204 105-351 31-239 (239)
95 1p9a_G Platelet glycoprotein I 98.7 5.2E-10 1.8E-14 97.9 -3.4 152 105-273 31-182 (290)
96 3a79_B TLR6, VLRB.59, TOLL-lik 98.7 3.6E-09 1.2E-13 101.6 1.8 101 80-194 77-179 (562)
97 3j0a_A TOLL-like receptor 5; m 98.7 5.7E-11 1.9E-15 119.6 -11.2 110 79-194 48-158 (844)
98 1h6t_A Internalin B; cell adhe 98.7 3.1E-08 1.1E-12 86.6 7.6 150 157-355 45-194 (291)
99 1m9s_A Internalin B; cell inva 98.7 8.3E-09 2.8E-13 99.3 3.2 166 79-274 43-208 (605)
100 3g06_A SSPH2 (leucine-rich rep 98.6 1E-08 3.4E-13 99.0 2.7 38 305-353 260-298 (622)
101 3a79_B TLR6, VLRB.59, TOLL-lik 98.6 4.2E-08 1.4E-12 94.1 6.4 175 132-350 331-509 (562)
102 2ell_A Acidic leucine-rich nuc 98.6 3.7E-09 1.3E-13 84.5 -1.7 133 132-274 24-158 (168)
103 2ell_A Acidic leucine-rich nuc 98.6 2.1E-09 7.3E-14 85.9 -3.4 134 184-350 24-159 (168)
104 2o6q_A Variable lymphocyte rec 98.5 9.1E-10 3.1E-14 95.4 -6.2 179 80-274 38-216 (270)
105 1xeu_A Internalin C; cellular 98.5 2.3E-08 8E-13 86.1 2.0 34 306-349 150-183 (263)
106 3m19_A Variable lymphocyte rec 98.5 1.6E-08 5.4E-13 86.5 -0.7 132 132-274 35-166 (251)
107 3g06_A SSPH2 (leucine-rich rep 98.4 2.5E-07 8.6E-12 89.2 7.3 36 304-352 239-274 (622)
108 1pgv_A TMD-1, tropomodulin TMD 98.4 1.6E-05 5.6E-10 64.1 14.7 127 202-347 32-166 (197)
109 1jl5_A Outer protein YOPM; leu 98.3 1.8E-07 6.2E-12 87.1 3.3 12 337-348 356-367 (454)
110 3m19_A Variable lymphocyte rec 98.3 1.6E-08 5.6E-13 86.4 -3.9 187 69-274 3-190 (251)
111 1xeu_A Internalin C; cellular 98.3 6.2E-07 2.1E-11 77.1 4.6 126 183-354 40-165 (263)
112 1p9a_G Platelet glycoprotein I 98.2 7.6E-08 2.6E-12 84.1 -1.4 200 102-350 7-207 (290)
113 2o6s_A Variable lymphocyte rec 98.2 2.8E-08 9.5E-13 82.3 -5.2 34 132-167 28-61 (208)
114 1a9n_A U2A', U2A'; complex (nu 98.2 1.9E-07 6.5E-12 75.1 -0.3 80 157-246 18-97 (176)
115 2xwt_C Thyrotropin receptor; s 98.2 1.9E-09 6.6E-14 91.5 -12.9 185 132-354 31-220 (239)
116 1jl5_A Outer protein YOPM; leu 98.2 7.9E-07 2.7E-11 82.7 3.2 198 79-349 71-268 (454)
117 1a9n_A U2A', U2A'; complex (nu 98.1 4.8E-07 1.6E-11 72.7 0.5 131 132-274 19-151 (176)
118 3cvr_A Invasion plasmid antige 98.1 9.1E-07 3.1E-11 84.3 1.9 190 80-328 60-251 (571)
119 1pgv_A TMD-1, tropomodulin TMD 98.1 4.5E-05 1.5E-09 61.6 11.2 106 226-350 30-138 (197)
120 2o6s_A Variable lymphocyte rec 98.0 8.6E-07 2.9E-11 73.2 0.8 149 157-348 27-175 (208)
121 2v70_A SLIT-2, SLIT homolog 2 98.0 1.1E-07 3.7E-12 79.5 -4.9 109 158-274 32-140 (220)
122 2v9t_B SLIT homolog 2 protein 97.9 7.8E-07 2.7E-11 74.2 -1.0 108 158-274 32-139 (220)
123 4g8a_A TOLL-like receptor 4; l 97.9 4.5E-07 1.5E-11 88.0 -2.9 12 131-142 75-86 (635)
124 3cvr_A Invasion plasmid antige 97.9 2.5E-06 8.7E-11 81.3 2.2 186 104-353 58-244 (571)
125 4g8a_A TOLL-like receptor 4; l 97.9 2.4E-08 8.3E-13 97.0 -12.1 134 183-349 444-578 (635)
126 2xot_A Amphoterin-induced prot 97.9 1.4E-07 4.9E-12 85.1 -6.4 134 132-274 39-174 (361)
127 4ay9_X Follicle-stimulating ho 97.9 2.2E-08 7.6E-13 90.0 -12.1 223 81-346 32-254 (350)
128 1ds9_A Outer arm dynein; leuci 97.9 8.1E-07 2.8E-11 72.8 -2.4 128 129-270 45-181 (198)
129 3e6j_A Variable lymphocyte rec 97.8 7.8E-07 2.7E-11 74.7 -3.1 61 209-274 110-170 (229)
130 1ds9_A Outer arm dynein; leuci 97.8 8.5E-07 2.9E-11 72.7 -2.9 106 155-274 45-151 (198)
131 4ay9_X Follicle-stimulating ho 97.8 2.5E-08 8.5E-13 89.7 -13.4 219 105-363 30-248 (350)
132 2v70_A SLIT-2, SLIT homolog 2 97.8 6E-07 2.1E-11 74.9 -4.4 134 131-274 31-164 (220)
133 2xot_A Amphoterin-induced prot 97.8 5E-07 1.7E-11 81.5 -5.5 158 105-274 39-200 (361)
134 2v9t_B SLIT homolog 2 protein 97.7 8.7E-07 3E-11 74.0 -4.1 133 131-274 31-163 (220)
135 3e6j_A Variable lymphocyte rec 97.7 2.5E-06 8.7E-11 71.6 -1.5 131 105-248 40-170 (229)
136 1dce_A Protein (RAB geranylger 97.6 1.3E-05 4.6E-10 76.5 1.5 102 159-274 442-544 (567)
137 3l2o_B F-box only protein 4; s 97.5 1.8E-05 6.1E-10 67.2 1.1 40 41-80 3-42 (312)
138 2wfh_A SLIT homolog 2 protein 97.5 3E-05 1E-09 63.1 1.8 83 184-274 31-113 (193)
139 4b8c_D Glucose-repressible alc 97.5 4.1E-05 1.4E-09 75.5 2.6 84 181-274 221-304 (727)
140 2e31_A FBS1, F-box only protei 97.4 6.5E-05 2.2E-09 64.5 3.4 39 40-78 48-87 (297)
141 1w8a_A SLIT protein; signaling 97.4 3.5E-06 1.2E-10 68.6 -4.8 85 184-274 29-113 (192)
142 3sb4_A Hypothetical leucine ri 97.4 3E-06 1E-10 75.3 -6.1 105 211-348 202-307 (329)
143 2o6r_A Variable lymphocyte rec 97.3 5.6E-05 1.9E-09 60.4 1.7 85 183-274 27-111 (177)
144 3sb4_A Hypothetical leucine ri 97.3 1.1E-05 3.7E-10 71.6 -3.2 202 104-347 24-283 (329)
145 1fs1_A SKP2 F-BOX, cyclin A/CD 97.3 1.6E-05 5.4E-10 49.5 -1.7 43 4-46 8-52 (53)
146 1dce_A Protein (RAB geranylger 97.2 7.6E-05 2.6E-09 71.3 0.9 125 105-244 441-567 (567)
147 4b8c_D Glucose-repressible alc 97.1 0.00014 4.7E-09 71.7 2.4 117 154-284 220-336 (727)
148 2wfh_A SLIT homolog 2 protein 97.1 3.6E-05 1.2E-09 62.6 -2.1 108 157-274 30-137 (193)
149 3v7d_B Cell division control p 97.1 0.00013 4.3E-09 67.7 1.2 41 39-79 11-51 (464)
150 1w8a_A SLIT protein; signaling 97.0 1.5E-05 5E-10 64.9 -5.0 109 158-274 29-137 (192)
151 2ovr_B FBW7, F-BOX/WD repeat p 96.8 0.0006 2E-08 62.8 3.6 40 39-78 15-54 (445)
152 2o6r_A Variable lymphocyte rec 96.8 0.00011 3.6E-09 58.8 -1.7 109 157-274 27-135 (177)
153 3rw6_A Nuclear RNA export fact 96.8 0.0023 7.8E-08 54.5 6.5 84 155-244 167-258 (267)
154 3rw6_A Nuclear RNA export fact 96.6 0.0029 9.9E-08 53.8 6.0 89 177-271 163-259 (267)
155 1p22_A F-BOX/WD-repeat protein 96.6 0.00031 1.1E-08 64.6 -0.1 41 39-79 7-51 (435)
156 2r9u_A Variable lymphocyte rec 96.6 0.00055 1.9E-08 54.5 1.3 83 211-316 33-115 (174)
157 3g39_A Variable lymphocyte rec 96.5 0.00067 2.3E-08 53.7 1.3 84 210-316 29-112 (170)
158 3g39_A Variable lymphocyte rec 95.1 0.0017 5.8E-08 51.3 -2.0 103 160-274 11-113 (170)
159 2r9u_A Variable lymphocyte rec 95.0 0.003 1E-07 50.1 -0.8 85 183-274 32-116 (174)
160 4fdw_A Leucine rich hypothetic 94.7 0.0011 3.7E-08 60.3 -4.7 37 302-348 319-355 (401)
161 2ifg_A High affinity nerve gro 94.0 0.015 5E-07 51.6 1.1 65 207-274 27-91 (347)
162 2e31_A FBS1, F-box only protei 91.8 0.015 5E-07 49.9 -2.0 31 4-34 50-81 (297)
163 2ifg_A High affinity nerve gro 90.9 0.018 6.3E-07 50.9 -2.4 102 162-274 12-114 (347)
164 4fdw_A Leucine rich hypothetic 90.8 0.0028 9.7E-08 57.6 -7.9 152 156-346 178-331 (401)
165 3l2o_B F-box only protein 4; s 90.8 0.012 4E-07 50.1 -3.5 30 4-33 4-33 (312)
166 3v7d_B Cell division control p 84.7 0.13 4.3E-06 47.2 -1.1 30 6-35 16-45 (464)
167 2ovr_B FBW7, F-BOX/WD repeat p 78.6 0.37 1.3E-05 43.8 -0.3 30 5-34 19-48 (445)
168 4gt6_A Cell surface protein; l 74.1 1.5 5.2E-05 39.2 2.5 123 129-272 262-387 (394)
169 4gt6_A Cell surface protein; l 70.8 1.1 3.7E-05 40.3 0.6 103 208-348 262-367 (394)
170 1p22_A F-BOX/WD-repeat protein 69.8 0.33 1.1E-05 44.1 -3.1 27 7-33 13-43 (435)
171 3rfe_A Platelet glycoprotein I 46.5 5.6 0.00019 29.2 0.7 36 306-349 31-66 (130)
172 4fs7_A Uncharacterized protein 34.8 3.9 0.00013 36.5 -2.2 120 101-242 272-393 (394)
173 4h09_A Hypothetical leucine ri 30.7 5.7 0.00019 35.1 -1.8 127 101-246 213-342 (379)
No 1
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.97 E-value=4.4e-30 Score=231.67 Aligned_cols=281 Identities=25% Similarity=0.371 Sum_probs=189.9
Q ss_pred cCCccCCCCHHHHHHHhcCCCccchhhhcccchhHHHhhh--ccCceeecccccccchHHHHHHhhcCCCCcEEEeeCCC
Q 017279 39 VITEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAIC--LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDK 116 (374)
Q Consensus 39 ~~~~~~~Lp~eil~~If~~L~~~~l~~~~~vc~~w~~~~~--~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 116 (374)
....|.+||+|++.+||+|++..++.+++.|||+|+.++. ..++.++++...... ..+..+. .++++.++++ .
T Consensus 5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~~~-~~~~~~~--~~~l~~L~l~--~ 79 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHP-DVTGRLL--SQGVIAFRCP--R 79 (336)
T ss_dssp --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBCCH-HHHHHHH--HTTCSEEECT--T
T ss_pred ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccCCH-HHHHhhh--hccceEEEcC--C
Confidence 3568999999999999999999999999999999999875 338899998765442 2222211 1577777777 3
Q ss_pred CCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCcc
Q 017279 117 PQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVK 196 (374)
Q Consensus 117 ~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~ 196 (374)
+.+...... + ..+++|++|+++++ .+++..+..+...+++|++|++++| .+++.....+. .+++|++|+++++..
T Consensus 80 n~l~~~~~~-~-~~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~-~~~~L~~L~L~~~~~ 154 (336)
T 2ast_B 80 SFMDQPLAE-H-FSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNTLA-KNSNLVRLNLSGCSG 154 (336)
T ss_dssp CEECSCCCS-C-CCCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTC-BCCHHHHHHHT-TCTTCSEEECTTCBS
T ss_pred ccccccchh-h-ccCCCCCEEEccCC-CcCHHHHHHHHhhCCCCCEEeCcCc-ccCHHHHHHHh-cCCCCCEEECCCCCC
Confidence 322221111 1 13677888888876 4666656666666788888888775 56655554443 478888888887633
Q ss_pred CccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCC-CCCeeecCCCC-CCCHHHHHHHHhcCCCCceEecCCCC
Q 017279 197 AATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCP-DLRSLDLCGCV-CITDDSVIALANGCPHLRSLGLYYCR 274 (374)
Q Consensus 197 ~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~-~L~~L~l~~~~-~l~~~~l~~l~~~~~~L~~L~l~~~~ 274 (374)
+++..+..+...+++|++|+++++..+++..+......++ +|++|++++|. .+++..+......+++|+.|++++|.
T Consensus 155 -l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 233 (336)
T 2ast_B 155 -FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV 233 (336)
T ss_dssp -CCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT
T ss_pred -CCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCC
Confidence 5666666666677888888887764577766666666777 88888888765 57766666666667888888888776
Q ss_pred CCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCcccccc
Q 017279 275 NITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSV 354 (374)
Q Consensus 275 ~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~~~ 354 (374)
.+++..+..+.. +++|++|++++|..+++..+.. +..+++|+.|++++| +++.
T Consensus 234 ~l~~~~~~~l~~------------------l~~L~~L~l~~~~~~~~~~~~~-------l~~~~~L~~L~l~~~--i~~~ 286 (336)
T 2ast_B 234 MLKNDCFQEFFQ------------------LNYLQHLSLSRCYDIIPETLLE-------LGEIPTLKTLQVFGI--VPDG 286 (336)
T ss_dssp TCCGGGGGGGGG------------------CTTCCEEECTTCTTCCGGGGGG-------GGGCTTCCEEECTTS--SCTT
T ss_pred cCCHHHHHHHhC------------------CCCCCEeeCCCCCCCCHHHHHH-------HhcCCCCCEEeccCc--cCHH
Confidence 566555554433 3677777777766666544322 245677777777777 5554
Q ss_pred cce
Q 017279 355 HCV 357 (374)
Q Consensus 355 ~~~ 357 (374)
.+.
T Consensus 287 ~~~ 289 (336)
T 2ast_B 287 TLQ 289 (336)
T ss_dssp CHH
T ss_pred HHH
Confidence 443
No 2
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.95 E-value=5.1e-27 Score=227.75 Aligned_cols=179 Identities=22% Similarity=0.276 Sum_probs=99.9
Q ss_pred CCccCCCCHHHHHHHhcCCC-ccchhhhcccchhHHHhhhcc-----------------------Cceeecccccccc--
Q 017279 40 ITEWKDIPMELLLRILSLVD-EPTVIVASGVCSGWRDAICLG-----------------------LTHLSLSWCKNNM-- 93 (374)
Q Consensus 40 ~~~~~~Lp~eil~~If~~L~-~~~l~~~~~vc~~w~~~~~~~-----------------------l~~L~l~~~~~~~-- 93 (374)
.+.|+.||+|++.+||+||+ .+++.+++.|||+|+.+.... ++.+++.++....
T Consensus 3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 82 (594)
T 2p1m_B 3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADF 82 (594)
T ss_dssp -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGGG
T ss_pred ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchhhc
Confidence 46899999999999999998 899999999999999874333 3444444432111
Q ss_pred -----------hHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcE
Q 017279 94 -----------NNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTR 162 (374)
Q Consensus 94 -----------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 162 (374)
...+..+...+++|+.|+++ ...+++..+..+...+++|++|++.+|..+++..+..+...+++|++
T Consensus 83 ~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~--~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~ 160 (594)
T 2p1m_B 83 NLVPDGWGGYVYPWIEAMSSSYTWLEEIRLK--RMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKE 160 (594)
T ss_dssp TCSCTTSCCBCHHHHHHHHHHCTTCCEEEEE--SCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCE
T ss_pred ccccccccchhhHHHHHHHHhCCCCCeEEee--CcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCE
Confidence 11233444566677777777 34466666666655567777777776655666666666655666666
Q ss_pred EeecCCCCCCHH---HHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCC
Q 017279 163 LNISGCTSFSDH---ALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWC 221 (374)
Q Consensus 163 L~L~~~~~~~~~---~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 221 (374)
|++++|. +++. .+..+...+++|++|+++++...++...+..+...+++|++|+++++
T Consensus 161 L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 161 LDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp EECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred EeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 6666542 1111 11112223344444444443312334444444444555555555543
No 3
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.94 E-value=8e-26 Score=203.78 Aligned_cols=300 Identities=22% Similarity=0.295 Sum_probs=222.1
Q ss_pred cCCCcCHHHHHHHHHHHHHhccccCCCCcc--ccCCccCCccCCCCHHHHHHHhcCCCccchhhhcccchhHHHhhhccC
Q 017279 4 EATNLSSEDLNLCFEKMMMAGAGADRAGGV--KMDGVVITEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICLGL 81 (374)
Q Consensus 4 ~~~~lp~e~~~~i~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~Lp~eil~~If~~L~~~~l~~~~~vc~~w~~~~~~~l 81 (374)
.+..||+|++.+||+||+..++.+++.||. ......+..|..+.. + .. ......+.......+
T Consensus 8 ~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l-------~---~~-----~~~~~~~~~~~~~~l 72 (336)
T 2ast_B 8 SWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDL-------T---GK-----NLHPDVTGRLLSQGV 72 (336)
T ss_dssp CSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEEC-------T---TC-----BCCHHHHHHHHHTTC
T ss_pred ChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeecc-------c---cc-----cCCHHHHHhhhhccc
Confidence 467899999999999999999999999994 333223334543321 0 00 001122333334568
Q ss_pred ceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCc
Q 017279 82 THLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLT 161 (374)
Q Consensus 82 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 161 (374)
+.+++..+..... ... ...+++|+.|+++ .+.+++..+..+...+++|++|+++++ .+++.....+.. +++|+
T Consensus 73 ~~L~l~~n~l~~~--~~~-~~~~~~L~~L~L~--~~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~-~~~L~ 145 (336)
T 2ast_B 73 IAFRCPRSFMDQP--LAE-HFSPFRVQHMDLS--NSVIEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNTLAK-NSNLV 145 (336)
T ss_dssp SEEECTTCEECSC--CCS-CCCCBCCCEEECT--TCEECHHHHHHHHTTBCCCSEEECTTC-BCCHHHHHHHTT-CTTCS
T ss_pred eEEEcCCcccccc--chh-hccCCCCCEEEcc--CCCcCHHHHHHHHhhCCCCCEEeCcCc-ccCHHHHHHHhc-CCCCC
Confidence 8888876543221 111 3367999999999 556777766667778999999999997 677777777765 89999
Q ss_pred EEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCC-CCCEEeccCCC-CCCHHHHHHHHhcCCCC
Q 017279 162 RLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCN-QLQSLNLGWCE-DVGDVGVMNLAYGCPDL 239 (374)
Q Consensus 162 ~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~-~L~~L~l~~~~-~~~~~~~~~l~~~~~~L 239 (374)
+|++++|..+++.++..+...+++|++|+++++.. +++..+......++ +|++|+++++. .+++..+......+++|
T Consensus 146 ~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~-l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L 224 (336)
T 2ast_B 146 RLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFD-FTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNL 224 (336)
T ss_dssp EEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTT-CCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTC
T ss_pred EEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCC-cChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCC
Confidence 99999977889888888888899999999999732 77777777778899 99999999975 57878888888889999
Q ss_pred CeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCC
Q 017279 240 RSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTAL 319 (374)
Q Consensus 240 ~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 319 (374)
++|++++|..+++..+..+. .+++|++|++++|..+++.++..+.. +++|+.|++++| +
T Consensus 225 ~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~l~~------------------~~~L~~L~l~~~--i 283 (336)
T 2ast_B 225 VHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRCYDIIPETLLELGE------------------IPTLKTLQVFGI--V 283 (336)
T ss_dssp SEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTCTTCCGGGGGGGGG------------------CTTCCEEECTTS--S
T ss_pred CEEeCCCCCcCCHHHHHHHh-CCCCCCEeeCCCCCCCCHHHHHHHhc------------------CCCCCEEeccCc--c
Confidence 99999998668777776665 48999999999997777776655543 489999999997 8
Q ss_pred CHHHHHHHHhhCCCccCCCCCceEEecCCcccccccce
Q 017279 320 TPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVHCV 357 (374)
Q Consensus 320 ~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~~~~~~ 357 (374)
++..+..+...+ +.|+++ |..+++..-.
T Consensus 284 ~~~~~~~l~~~l---------~~L~l~-~n~l~~~~~~ 311 (336)
T 2ast_B 284 PDGTLQLLKEAL---------PHLQIN-CSHFTTIARP 311 (336)
T ss_dssp CTTCHHHHHHHS---------TTSEES-CCCSCCTTCS
T ss_pred CHHHHHHHHhhC---------cceEEe-cccCccccCC
Confidence 877777765333 333454 4456654433
No 4
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.93 E-value=1.5e-25 Score=217.43 Aligned_cols=175 Identities=22% Similarity=0.323 Sum_probs=94.1
Q ss_pred cCCCCHHHHHHHhcCC-CccchhhhcccchhHHHhhhcc-----------------------Cceeecccccc-------
Q 017279 43 WKDIPMELLLRILSLV-DEPTVIVASGVCSGWRDAICLG-----------------------LTHLSLSWCKN------- 91 (374)
Q Consensus 43 ~~~Lp~eil~~If~~L-~~~~l~~~~~vc~~w~~~~~~~-----------------------l~~L~l~~~~~------- 91 (374)
...||+|++.+||+|| +.+++.+++.|||+|+.+.... +++|+++++..
T Consensus 13 ~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~ 92 (592)
T 3ogk_B 13 CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLI 92 (592)
T ss_dssp CCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCGGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCS
T ss_pred cCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEeeccccChHHHHHhCCCCeEEEecCCcchhhcccc
Confidence 3479999999999999 8999999999999999875333 34444433211
Q ss_pred ------cchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCC-CCEEecCCCCCCCHHHHHHHHhcCCCCcEEe
Q 017279 92 ------NMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHD-LQDLDLSKSFKLSDRSLYALAHGCPNLTRLN 164 (374)
Q Consensus 92 ------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~-L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~ 164 (374)
.....+..+...+++|+.|+++ ...+++..+..+...+++ |++|++++|..++...+..+...|++|++|+
T Consensus 93 ~~~~~~~~~~~l~~l~~~~~~L~~L~L~--~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~ 170 (592)
T 3ogk_B 93 PENWGGYVTPWVTEISNNLRQLKSVHFR--RMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLL 170 (592)
T ss_dssp CTTSCCBCHHHHHHHHHHCTTCCEEEEE--SCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEE
T ss_pred cccccccchHHHHHHHhhCCCCCeEEee--ccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEE
Confidence 0111233334455666666665 334555555544443444 6666665554444555555554556666666
Q ss_pred ecCCCCCCH---HHHHHHHhcCCCCcEEEcCCCccC-ccHHHHHHHHhcCCCCCEEeccC
Q 017279 165 ISGCTSFSD---HALAYLCGFCRKLKILNLCGCVKA-ATDYALQAIGRNCNQLQSLNLGW 220 (374)
Q Consensus 165 L~~~~~~~~---~~~~~l~~~~~~L~~L~L~~~~~~-~~~~~~~~l~~~~~~L~~L~l~~ 220 (374)
+++|. +.+ ..+..+...+++|++|+++++... +....+..+...+++|+.|++++
T Consensus 171 L~~~~-~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~ 229 (592)
T 3ogk_B 171 MEESS-FSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGD 229 (592)
T ss_dssp CTTCE-EECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSS
T ss_pred Ccccc-ccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccC
Confidence 55542 111 112233333444444444433211 12334444444455555555544
No 5
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=1.6e-23 Score=203.15 Aligned_cols=30 Identities=13% Similarity=-0.020 Sum_probs=23.3
Q ss_pred CcCCCcCHHHHHHHHHHHH-HhccccCCCCc
Q 017279 3 GEATNLSSEDLNLCFEKMM-MAGAGADRAGG 32 (374)
Q Consensus 3 ~~~~~lp~e~~~~i~~~l~-~~~~~~~~~~~ 32 (374)
+.+..||+|++.+||+||+ ..+..+++.||
T Consensus 4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vc 34 (594)
T 2p1m_B 4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVC 34 (594)
T ss_dssp ------CHHHHHHHHHTCCCHHHHHHHHTSC
T ss_pred cchhhCCHHHHHHHHhhcCCchhHHHHHHHH
Confidence 5677899999999999999 99999999999
No 6
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.91 E-value=7.5e-24 Score=205.39 Aligned_cols=27 Identities=0% Similarity=-0.125 Sum_probs=25.2
Q ss_pred CCcCHHHHHHHHHHH-HHhccccCCCCc
Q 017279 6 TNLSSEDLNLCFEKM-MMAGAGADRAGG 32 (374)
Q Consensus 6 ~~lp~e~~~~i~~~l-~~~~~~~~~~~~ 32 (374)
..||+|++.+||+|| +..+..+++.||
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vc 41 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVC 41 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSC
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 369999999999999 899999999999
No 7
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.73 E-value=1e-15 Score=140.23 Aligned_cols=253 Identities=17% Similarity=0.209 Sum_probs=173.2
Q ss_pred ccCceeecccccccchH--HHHHHhhcCCCCcEEEeeCCC--CCCCh---HHHHHH---HHhCCCCCEEecCCCCCCCHH
Q 017279 79 LGLTHLSLSWCKNNMNN--LVLSLAPKLTKLQTLVLRQDK--PQLED---NAVEAI---ANSCHDLQDLDLSKSFKLSDR 148 (374)
Q Consensus 79 ~~l~~L~l~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~--~~~~~---~~~~~l---~~~~~~L~~L~l~~~~~~~~~ 148 (374)
..++.|+++++...... .+...+..+++|+.|+++ .+ ..+++ ..+..+ ...+++|++|+++++ .++..
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls-~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~ 109 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS-DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AFGPT 109 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECC-SCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-CCCTT
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCc-ccccCccccchhHHHHHHHHHHhhCCcccEEECCCC-cCCHH
Confidence 45899999987554332 233445678999999998 33 23322 223222 245799999999997 55553
Q ss_pred H---HHHHHhcCCCCcEEeecCCCCCCHHHHHHHH---hcC---------CCCcEEEcCCCccCccHHHHH---HHHhcC
Q 017279 149 S---LYALAHGCPNLTRLNISGCTSFSDHALAYLC---GFC---------RKLKILNLCGCVKAATDYALQ---AIGRNC 210 (374)
Q Consensus 149 ~---~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~---~~~---------~~L~~L~L~~~~~~~~~~~~~---~l~~~~ 210 (374)
+ +......+++|++|++++| .+++.+...+. ..+ ++|++|+++++. +.+..+. .....+
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~--l~~~~~~~l~~~l~~~ 186 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR--LENGSMKEWAKTFQSH 186 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC--CTGGGHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCCEEECcCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC--CCcHHHHHHHHHHHhC
Confidence 2 3333355899999999985 56655443332 333 899999999865 5544444 344578
Q ss_pred CCCCEEeccCCCCCCHHHHHHHHh----cCCCCCeeecCCCCCCCHHHHHHH---HhcCCCCceEecCCCCCCCHHHHHH
Q 017279 211 NQLQSLNLGWCEDVGDVGVMNLAY----GCPDLRSLDLCGCVCITDDSVIAL---ANGCPHLRSLGLYYCRNITDRAIYS 283 (374)
Q Consensus 211 ~~L~~L~l~~~~~~~~~~~~~l~~----~~~~L~~L~l~~~~~l~~~~l~~l---~~~~~~L~~L~l~~~~~i~~~~~~~ 283 (374)
++|++|+++++ .+++.++..+.. .+++|+.|++++| .+++.+...+ ...+++|+.|++++|. +++.+...
T Consensus 187 ~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~ 263 (386)
T 2ca6_A 187 RLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAA 263 (386)
T ss_dssp TTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHH
T ss_pred CCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHH
Confidence 99999999986 478776555443 6899999999995 5776544333 3468999999999996 88887776
Q ss_pred HHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCccccccc
Q 017279 284 LAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVH 355 (374)
Q Consensus 284 l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~~~~ 355 (374)
+..... ...+++|++|++++ +.+++.++..+...+. ..+++|+.|++++|+ ++...
T Consensus 264 l~~~l~------------~~~~~~L~~L~L~~-n~i~~~g~~~l~~~l~--~~l~~L~~L~l~~N~-l~~~~ 319 (386)
T 2ca6_A 264 VVDAFS------------KLENIGLQTLRLQY-NEIELDAVRTLKTVID--EKMPDLLFLELNGNR-FSEED 319 (386)
T ss_dssp HHHHHH------------TCSSCCCCEEECCS-SCCBHHHHHHHHHHHH--HHCTTCCEEECTTSB-SCTTS
T ss_pred HHHHHh------------hccCCCeEEEECcC-CcCCHHHHHHHHHHHH--hcCCCceEEEccCCc-CCcch
Confidence 654310 00248999999999 5788865555543210 347899999999996 66544
No 8
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.72 E-value=5.2e-16 Score=145.59 Aligned_cols=252 Identities=22% Similarity=0.288 Sum_probs=166.2
Q ss_pred hccCceeecccccccchH--HHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCC----CCCEEecCCCCCCCHHH--
Q 017279 78 CLGLTHLSLSWCKNNMNN--LVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCH----DLQDLDLSKSFKLSDRS-- 149 (374)
Q Consensus 78 ~~~l~~L~l~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~----~L~~L~l~~~~~~~~~~-- 149 (374)
.+.++.|+++++...... .+......+++|+.|+++ .+.+++.....+...++ +|++|+++++ .+++.+
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls--~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~ 103 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR--SNELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGCG 103 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECT--TCCCHHHHHHHHHHTTCSTTCCCCEEECTTS-CCBGGGHH
T ss_pred cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCC--CCcCChHHHHHHHHHHhhCCCceeEEEccCC-CCCHHHHH
Confidence 355888888877644321 334555567888888888 55676666666666555 6888888886 455433
Q ss_pred -HHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhc----CCCCcEEEcCCCccCccHHH---HHHHHhcCCCCCEEeccCC
Q 017279 150 -LYALAHGCPNLTRLNISGCTSFSDHALAYLCGF----CRKLKILNLCGCVKAATDYA---LQAIGRNCNQLQSLNLGWC 221 (374)
Q Consensus 150 -~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~----~~~L~~L~L~~~~~~~~~~~---~~~l~~~~~~L~~L~l~~~ 221 (374)
+......+++|++|+++++ .+.+.++..+... .++|++|+++++. +++.. +......+++|++|+++++
T Consensus 104 ~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~--l~~~~~~~l~~~l~~~~~L~~L~L~~n 180 (461)
T 1z7x_W 104 VLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYCS--LSAASCEPLASVLRAKPDFKELTVSNN 180 (461)
T ss_dssp HHHHHTTSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC--CBGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHHHccCCceeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCCC--CCHHHHHHHHHHHhhCCCCCEEECcCC
Confidence 3333345778888888874 4666655544332 4568888888765 44433 3334456788888888875
Q ss_pred CCCCHHHHHHHHh----cCCCCCeeecCCCCCCCHHH---HHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCc
Q 017279 222 EDVGDVGVMNLAY----GCPDLRSLDLCGCVCITDDS---VIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPG 294 (374)
Q Consensus 222 ~~~~~~~~~~l~~----~~~~L~~L~l~~~~~l~~~~---l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~ 294 (374)
. +++.+...+.. ..++|++|++++| .+++.+ +......+++|++|++++|. +++.++..+.....
T Consensus 181 ~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~----- 252 (461)
T 1z7x_W 181 D-INEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLL----- 252 (461)
T ss_dssp B-CHHHHHHHHHHHHHHSCCCCCEEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHT-----
T ss_pred C-cchHHHHHHHHHHhcCCCCceEEEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHh-----
Confidence 4 66655555543 3458888888885 465543 23333357888888888884 77777776654311
Q ss_pred cccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCcccccccc
Q 017279 295 IWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVHC 356 (374)
Q Consensus 295 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~~~~~ 356 (374)
..+++|++|++++| .+++.+...+... +..+++|+.|++++| .+++.+.
T Consensus 253 --------~~~~~L~~L~L~~n-~l~~~~~~~l~~~---l~~~~~L~~L~Ls~n-~i~~~~~ 301 (461)
T 1z7x_W 253 --------HPSSRLRTLWIWEC-GITAKGCGDLCRV---LRAKESLKELSLAGN-ELGDEGA 301 (461)
T ss_dssp --------STTCCCCEEECTTS-CCCHHHHHHHHHH---HHHCTTCCEEECTTC-CCHHHHH
T ss_pred --------cCCCCceEEECcCC-CCCHHHHHHHHHH---HhhCCCcceEECCCC-CCchHHH
Confidence 13489999999995 8998876666543 355789999999999 4766544
No 9
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.72 E-value=1.1e-15 Score=143.26 Aligned_cols=249 Identities=24% Similarity=0.301 Sum_probs=180.6
Q ss_pred ccCceeecccccccchHHHHHHhhcCC----CCcEEEeeCCCCCCChH---HHHHHHHhCCCCCEEecCCCCCCCHHHHH
Q 017279 79 LGLTHLSLSWCKNNMNNLVLSLAPKLT----KLQTLVLRQDKPQLEDN---AVEAIANSCHDLQDLDLSKSFKLSDRSLY 151 (374)
Q Consensus 79 ~~l~~L~l~~~~~~~~~~~~~~~~~~~----~L~~L~l~~~~~~~~~~---~~~~l~~~~~~L~~L~l~~~~~~~~~~~~ 151 (374)
..+++|+++++... +.....+...++ +|++|+++ .+.+++. .+......+++|++|+++++ .+++.++.
T Consensus 56 ~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~L~--~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~ 131 (461)
T 1z7x_W 56 PALAELNLRSNELG-DVGVHCVLQGLQTPSCKIQKLSLQ--NCCLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQ 131 (461)
T ss_dssp TTCCEEECTTCCCH-HHHHHHHHHTTCSTTCCCCEEECT--TSCCBGGGHHHHHHHTTSCTTCCEEECCSS-BCHHHHHH
T ss_pred CCcCEEeCCCCcCC-hHHHHHHHHHHhhCCCceeEEEcc--CCCCCHHHHHHHHHHHccCCceeEEECCCC-cCchHHHH
Confidence 56999999986543 233444444555 79999999 5567753 33333456889999999997 57777776
Q ss_pred HHHhc----CCCCcEEeecCCCCCCHHH---HHHHHhcCCCCcEEEcCCCccCccHHHHHHHHh----cCCCCCEEeccC
Q 017279 152 ALAHG----CPNLTRLNISGCTSFSDHA---LAYLCGFCRKLKILNLCGCVKAATDYALQAIGR----NCNQLQSLNLGW 220 (374)
Q Consensus 152 ~l~~~----~~~L~~L~L~~~~~~~~~~---~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~----~~~~L~~L~l~~ 220 (374)
.+... .++|++|++++| .+++.+ +......+++|++|+++++. +.+.....+.. ..++|++|++++
T Consensus 132 ~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~--i~~~~~~~l~~~l~~~~~~L~~L~L~~ 208 (461)
T 1z7x_W 132 LLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDFKELTVSNND--INEAGVRVLCQGLKDSPCQLEALKLES 208 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCTTCCEEECCSSB--CHHHHHHHHHHHHHHSCCCCCEEECTT
T ss_pred HHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHHHHhhCCCCCEEECcCCC--cchHHHHHHHHHHhcCCCCceEEEccC
Confidence 66543 457999999986 565533 44455668999999999865 66666555543 466999999998
Q ss_pred CCCCCHHH---HHHHHhcCCCCCeeecCCCCCCCHHHHHHHHh----cCCCCceEecCCCCCCCHHHHHHHHhcCCCCCC
Q 017279 221 CEDVGDVG---VMNLAYGCPDLRSLDLCGCVCITDDSVIALAN----GCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKP 293 (374)
Q Consensus 221 ~~~~~~~~---~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~----~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~ 293 (374)
+. +++.+ +......+++|++|++++| .+++.++..+.. .+++|++|++++|. +++.++..+...
T Consensus 209 n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~------ 279 (461)
T 1z7x_W 209 CG-VTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRV------ 279 (461)
T ss_dssp SC-CBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHH------
T ss_pred CC-CcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHH------
Confidence 75 66544 3344456899999999995 688777766554 47899999999994 998876666542
Q ss_pred ccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCccccccc
Q 017279 294 GIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVH 355 (374)
Q Consensus 294 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~~~~ 355 (374)
+..+++|++|++++ +.+++.....+...+. ...++|+.|++++|. ++..+
T Consensus 280 --------l~~~~~L~~L~Ls~-n~i~~~~~~~l~~~l~--~~~~~L~~L~L~~n~-l~~~~ 329 (461)
T 1z7x_W 280 --------LRAKESLKELSLAG-NELGDEGARLLCETLL--EPGCQLESLWVKSCS-FTAAC 329 (461)
T ss_dssp --------HHHCTTCCEEECTT-CCCHHHHHHHHHHHHT--STTCCCCEEECTTSC-CBGGG
T ss_pred --------HhhCCCcceEECCC-CCCchHHHHHHHHHhc--cCCccceeeEcCCCC-CchHH
Confidence 11248999999999 5788887777765443 235799999999996 77654
No 10
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.70 E-value=3.2e-15 Score=137.00 Aligned_cols=231 Identities=18% Similarity=0.173 Sum_probs=165.3
Q ss_pred HHhhcCCCCcEEEeeCCCCCCChHHHHHHH---HhCCCCCEEecCCC--CCCCH---HHHHHH---HhcCCCCcEEeecC
Q 017279 99 SLAPKLTKLQTLVLRQDKPQLEDNAVEAIA---NSCHDLQDLDLSKS--FKLSD---RSLYAL---AHGCPNLTRLNISG 167 (374)
Q Consensus 99 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~--~~~~~---~~~~~l---~~~~~~L~~L~L~~ 167 (374)
.....+++|+.|+++ .+.+++.....+. ..+++|++|+++++ ..++. ..+..+ ...+++|++|++++
T Consensus 26 ~~l~~~~~L~~L~L~--~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLS--GNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp HHHHHCSCCCEEECT--TSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHhcCCCccEEECC--CCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 345578999999999 6677776665544 35889999999986 22222 233333 24589999999998
Q ss_pred CCCCCHH---HHHHHHhcCCCCcEEEcCCCccCccHHHHHHHH---hcC---------CCCCEEeccCCCCCCHHHHH--
Q 017279 168 CTSFSDH---ALAYLCGFCRKLKILNLCGCVKAATDYALQAIG---RNC---------NQLQSLNLGWCEDVGDVGVM-- 230 (374)
Q Consensus 168 ~~~~~~~---~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~---~~~---------~~L~~L~l~~~~~~~~~~~~-- 230 (374)
+ .+.+. .+......+++|++|+++++. ++......+. ..+ ++|++|+++++. +++..+.
T Consensus 104 n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~--l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l 179 (386)
T 2ca6_A 104 N-AFGPTAQEPLIDFLSKHTPLEHLYLHNNG--LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEW 179 (386)
T ss_dssp C-CCCTTTHHHHHHHHHHCTTCCEEECCSSC--CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHHH
T ss_pred C-cCCHHHHHHHHHHHHhCCCCCEEECcCCC--CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-CCcHHHHHH
Confidence 5 55553 344455679999999999976 5544433333 233 899999999865 6654444
Q ss_pred -HHHhcCCCCCeeecCCCCCCCHHHHHHHHh----cCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCC
Q 017279 231 -NLAYGCPDLRSLDLCGCVCITDDSVIALAN----GCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDE 305 (374)
Q Consensus 231 -~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~----~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 305 (374)
.....+++|++|++++| .+++.++..+.. .+++|+.|++++|. +++.+...+... +..+
T Consensus 180 ~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~--------------l~~~ 243 (386)
T 2ca6_A 180 AKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIA--------------LKSW 243 (386)
T ss_dssp HHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHH--------------GGGC
T ss_pred HHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHHH--------------HccC
Confidence 34457899999999995 788877655554 68999999999996 887777666543 1245
Q ss_pred CCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCcccccc
Q 017279 306 EGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSV 354 (374)
Q Consensus 306 ~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~~~ 354 (374)
++|++|++++ +.+++.+...+...+.. ..+++|+.|++++|. ++..
T Consensus 244 ~~L~~L~L~~-n~i~~~~~~~l~~~l~~-~~~~~L~~L~L~~n~-i~~~ 289 (386)
T 2ca6_A 244 PNLRELGLND-CLLSARGAAAVVDAFSK-LENIGLQTLRLQYNE-IELD 289 (386)
T ss_dssp TTCCEEECTT-CCCCHHHHHHHHHHHHT-CSSCCCCEEECCSSC-CBHH
T ss_pred CCcCEEECCC-CCCchhhHHHHHHHHhh-ccCCCeEEEECcCCc-CCHH
Confidence 8999999999 46998876666543211 237899999999995 7664
No 11
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.60 E-value=3.3e-14 Score=129.00 Aligned_cols=248 Identities=19% Similarity=0.127 Sum_probs=159.3
Q ss_pred cCceeecccccccch--HHHHHHhhcCC-CCcEEEeeCCCCCCChHH---HHHHHHh-CCCCCEEecCCCCCCCHH---H
Q 017279 80 GLTHLSLSWCKNNMN--NLVLSLAPKLT-KLQTLVLRQDKPQLEDNA---VEAIANS-CHDLQDLDLSKSFKLSDR---S 149 (374)
Q Consensus 80 ~l~~L~l~~~~~~~~--~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~---~~~l~~~-~~~L~~L~l~~~~~~~~~---~ 149 (374)
.+++|+++++..... ..+...+..++ +|+.|+++ .+.+++.. +..+... +++|++|+++++ .+++. .
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls--~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~ 99 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLS--GNSLGFKNSDELVQILAAIPANVTSLNLSGN-FLSYKSSDE 99 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECC--SSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHH
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECc--CCCCCHHHHHHHHHHHhccCCCccEEECcCC-cCChHHHHH
Confidence 388999988764322 22334455677 89999999 45555433 3333233 389999999997 44433 3
Q ss_pred HHHHHhcC-CCCcEEeecCCCCCCHHH---HHHHHhc-CCCCcEEEcCCCccCccHH---HHHHHHhcCC-CCCEEeccC
Q 017279 150 LYALAHGC-PNLTRLNISGCTSFSDHA---LAYLCGF-CRKLKILNLCGCVKAATDY---ALQAIGRNCN-QLQSLNLGW 220 (374)
Q Consensus 150 ~~~l~~~~-~~L~~L~L~~~~~~~~~~---~~~l~~~-~~~L~~L~L~~~~~~~~~~---~~~~l~~~~~-~L~~L~l~~ 220 (374)
+......+ ++|++|+++++ .+++.+ +...... .++|++|+++++. +.+. .+.......+ +|++|++++
T Consensus 100 l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~--l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 176 (362)
T 3goz_A 100 LVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGND--LGIKSSDELIQILAAIPANVNSLNLRG 176 (362)
T ss_dssp HHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSC--GGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred HHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCc--CCHHHHHHHHHHHhcCCccccEeeecC
Confidence 33333344 79999999985 454433 3333334 3689999999865 5543 3333333454 899999988
Q ss_pred CCCCCHH---HHHHHHhcC-CCCCeeecCCCCCCCHHHHH----HHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCC
Q 017279 221 CEDVGDV---GVMNLAYGC-PDLRSLDLCGCVCITDDSVI----ALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNK 292 (374)
Q Consensus 221 ~~~~~~~---~~~~l~~~~-~~L~~L~l~~~~~l~~~~l~----~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~ 292 (374)
+. +++. .+......+ ++|++|++++| .+++.+.. .+....++|+.|++++|. +++.+...+....
T Consensus 177 n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~---- 249 (362)
T 3goz_A 177 NN-LASKNCAELAKFLASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKLLK---- 249 (362)
T ss_dssp SC-GGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHHTT----
T ss_pred CC-CchhhHHHHHHHHHhCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHHHH----
Confidence 64 4433 334444456 49999999995 56553332 222224689999999985 7776665555431
Q ss_pred CccccccccccCCCCCcEEecCCCC--CCCHHHHHHHHhhCCCccCCCCCceEEecCCcccccc
Q 017279 293 PGIWESMKGRYDEEGLQSLNISQCT--ALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSV 354 (374)
Q Consensus 293 ~~~~~~~~~~~~~~~L~~L~l~~~~--~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~~~ 354 (374)
..+++|++|++++|. .+++..+..+...++ .+++|+.|++++++ +...
T Consensus 250 ----------~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~---~l~~L~~LdL~~N~-l~~~ 299 (362)
T 3goz_A 250 ----------DSLKHLQTVYLDYDIVKNMSKEQCKALGAAFP---NIQKIILVDKNGKE-IHPS 299 (362)
T ss_dssp ----------TTTTTCSEEEEEHHHHTTCCHHHHHHHHTTST---TCCEEEEECTTSCB-CCGG
T ss_pred ----------hcCCCccEEEeccCCccccCHHHHHHHHHHhc---cCCceEEEecCCCc-CCCc
Confidence 145889999998853 477777777776554 45789999999886 5554
No 12
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.55 E-value=3.6e-13 Score=122.18 Aligned_cols=228 Identities=18% Similarity=0.139 Sum_probs=150.9
Q ss_pred HHHHHhhcCCCCcEEEeeCCCCCCChHHH---HHHHHhCC-CCCEEecCCCCCCCHHH---HHHHHhc-CCCCcEEeecC
Q 017279 96 LVLSLAPKLTKLQTLVLRQDKPQLEDNAV---EAIANSCH-DLQDLDLSKSFKLSDRS---LYALAHG-CPNLTRLNISG 167 (374)
Q Consensus 96 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~l~~~~~-~L~~L~l~~~~~~~~~~---~~~l~~~-~~~L~~L~L~~ 167 (374)
.++.+....++|+.|+++ .+.+++... ......++ +|++|+++++ .+++.. +..+... +++|++|++++
T Consensus 13 ~~~~~~~~~~~L~~L~Ls--~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 89 (362)
T 3goz_A 13 PVEEFTSIPHGVTSLDLS--LNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSG 89 (362)
T ss_dssp HHHHHHTSCTTCCEEECT--TSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCS
T ss_pred HHHHHHhCCCCceEEEcc--CCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcC
Confidence 345566666779999999 455554333 23334577 8999999997 555433 3333333 38999999998
Q ss_pred CCCCC---HHHHHHHHhcC-CCCcEEEcCCCccCccHHHHHHH---Hhc-CCCCCEEeccCCCCCCHHHH---HHHHhcC
Q 017279 168 CTSFS---DHALAYLCGFC-RKLKILNLCGCVKAATDYALQAI---GRN-CNQLQSLNLGWCEDVGDVGV---MNLAYGC 236 (374)
Q Consensus 168 ~~~~~---~~~~~~l~~~~-~~L~~L~L~~~~~~~~~~~~~~l---~~~-~~~L~~L~l~~~~~~~~~~~---~~l~~~~ 236 (374)
+ .++ ...+......+ ++|++|+++++. +++.....+ ... +++|++|+++++. +++.+. .......
T Consensus 90 n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~--l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~ 165 (362)
T 3goz_A 90 N-FLSYKSSDELVKTLAAIPFTITVLDLGWND--FSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQILAAI 165 (362)
T ss_dssp S-CGGGSCHHHHHHHHHTSCTTCCEEECCSSC--GGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTS
T ss_pred C-cCChHHHHHHHHHHHhCCCCccEEECcCCc--CCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHHHhcC
Confidence 5 444 33444444555 899999999866 554444333 333 4699999999864 554333 3333445
Q ss_pred C-CCCeeecCCCCCCCH---HHHHHHHhcC-CCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEE
Q 017279 237 P-DLRSLDLCGCVCITD---DSVIALANGC-PHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSL 311 (374)
Q Consensus 237 ~-~L~~L~l~~~~~l~~---~~l~~l~~~~-~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L 311 (374)
+ +|++|++++| .+++ ..+......+ ++|+.|++++|. +++.+...+...... ..++|++|
T Consensus 166 ~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~-------------~~~~L~~L 230 (362)
T 3goz_A 166 PANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSS-------------IPNHVVSL 230 (362)
T ss_dssp CTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHH-------------SCTTCCEE
T ss_pred CccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhc-------------CCCCceEE
Confidence 5 9999999996 4543 3344444446 499999999996 777555544432100 02699999
Q ss_pred ecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCc
Q 017279 312 NISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCL 349 (374)
Q Consensus 312 ~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~ 349 (374)
++++ +.+++.+.+.+...+ ..+++|+.|++++|.
T Consensus 231 ~Ls~-N~l~~~~~~~l~~~~---~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 231 NLCL-NCLHGPSLENLKLLK---DSLKHLQTVYLDYDI 264 (362)
T ss_dssp ECCS-SCCCCCCHHHHHHTT---TTTTTCSEEEEEHHH
T ss_pred ECcC-CCCCcHHHHHHHHHH---hcCCCccEEEeccCC
Confidence 9999 578876665554332 556889999999996
No 13
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.45 E-value=6.4e-12 Score=113.92 Aligned_cols=175 Identities=21% Similarity=0.225 Sum_probs=104.2
Q ss_pred CCCCcEEEeeCCCCCCChHHHHHHHHh----CCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHH
Q 017279 104 LTKLQTLVLRQDKPQLEDNAVEAIANS----CHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYL 179 (374)
Q Consensus 104 ~~~L~~L~l~~~~~~~~~~~~~~l~~~----~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l 179 (374)
.++++.|+++ .+.+++.....+... +++|++|+++++ .+++.++..+...+++|++|+|++| .+++.+...+
T Consensus 71 ~~~L~~L~Ls--~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L 146 (372)
T 3un9_A 71 LSSLRQLNLA--GVRMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDL 146 (372)
T ss_dssp HTTCCEEECT--TSCCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHH
T ss_pred HhhCCEEEec--CCCCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHH
Confidence 3567777777 455666554444432 246777777775 5666666666655667777777763 6666655544
Q ss_pred Hh----cCCCCcEEEcCCCccCccHHHHHHH---HhcCCCCCEEeccCCCCCCHHHHHHHH---hcCCCCCeeecCCCCC
Q 017279 180 CG----FCRKLKILNLCGCVKAATDYALQAI---GRNCNQLQSLNLGWCEDVGDVGVMNLA---YGCPDLRSLDLCGCVC 249 (374)
Q Consensus 180 ~~----~~~~L~~L~L~~~~~~~~~~~~~~l---~~~~~~L~~L~l~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~ 249 (374)
.. ..++|++|+|+++. +++.....+ ...+++|++|+++++. +++.+...+. ..+++|+.|++++| .
T Consensus 147 ~~~L~~~~~~L~~L~Ls~n~--l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~ 222 (372)
T 3un9_A 147 RDLLLHDQCQITTLRLSNNP--LTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYN-G 222 (372)
T ss_dssp HHHHHSTTCCCCEEECCSSC--CHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSS-C
T ss_pred HHHHHhcCCccceeeCCCCC--CChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCC-C
Confidence 32 34667777777654 555444333 2456667777776643 5555544332 34566777777763 5
Q ss_pred CCHHHHHHHHh---cCCCCceEecCCCCCCCHHHHHHHHhc
Q 017279 250 ITDDSVIALAN---GCPHLRSLGLYYCRNITDRAIYSLAQS 287 (374)
Q Consensus 250 l~~~~l~~l~~---~~~~L~~L~l~~~~~i~~~~~~~l~~~ 287 (374)
+++.+...+.. ..++|++|++++|. +++.++..+...
T Consensus 223 i~~~g~~~l~~~L~~~~~L~~L~Ls~N~-i~~~g~~~L~~~ 262 (372)
T 3un9_A 223 AGDTAALALARAAREHPSLELLHLYFNE-LSSEGRQVLRDL 262 (372)
T ss_dssp CCHHHHHHHHHHHHHCSSCCEEECTTSS-CCHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhCCCCCEEeccCCC-CCHHHHHHHHHH
Confidence 66655444433 35667777777664 677666666654
No 14
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.44 E-value=7.3e-13 Score=119.36 Aligned_cols=203 Identities=16% Similarity=0.113 Sum_probs=93.8
Q ss_pred CCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcC
Q 017279 131 CHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNC 210 (374)
Q Consensus 131 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~ 210 (374)
+++|++|+++++...... .. ...+++|++|+++++. +..... ...+++|++|+++++. +.... . ...+
T Consensus 131 l~~L~~L~l~~n~~~~~~--~~-~~~l~~L~~L~l~~~~-~~~~~~---~~~l~~L~~L~l~~n~--l~~~~--~-~~~l 198 (347)
T 4fmz_A 131 LTKMYSLNLGANHNLSDL--SP-LSNMTGLNYLTVTESK-VKDVTP---IANLTDLYSLSLNYNQ--IEDIS--P-LASL 198 (347)
T ss_dssp CTTCCEEECTTCTTCCCC--GG-GTTCTTCCEEECCSSC-CCCCGG---GGGCTTCSEEECTTSC--CCCCG--G-GGGC
T ss_pred CCceeEEECCCCCCcccc--cc-hhhCCCCcEEEecCCC-cCCchh---hccCCCCCEEEccCCc--ccccc--c-ccCC
Confidence 455555555554222211 11 1234555555555432 211110 2345566666665543 11111 0 2345
Q ss_pred CCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcC-C
Q 017279 211 NQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSG-V 289 (374)
Q Consensus 211 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~-~ 289 (374)
++|+.|+++++. +.+... ...+++|+.|++++|. ++.... ...+++|+.|++++|. ++.. ..+.... .
T Consensus 199 ~~L~~L~l~~n~-l~~~~~---~~~~~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n~-l~~~--~~~~~l~~L 267 (347)
T 4fmz_A 199 TSLHYFTAYVNQ-ITDITP---VANMTRLNSLKIGNNK-ITDLSP---LANLSQLTWLEIGTNQ-ISDI--NAVKDLTKL 267 (347)
T ss_dssp TTCCEEECCSSC-CCCCGG---GGGCTTCCEEECCSSC-CCCCGG---GTTCTTCCEEECCSSC-CCCC--GGGTTCTTC
T ss_pred CccceeecccCC-CCCCch---hhcCCcCCEEEccCCc-cCCCcc---hhcCCCCCEEECCCCc-cCCC--hhHhcCCCc
Confidence 555555555432 222111 3345666666666642 322111 2345666666666653 3321 1111100 0
Q ss_pred C---CCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCcccccccceecCccccc
Q 017279 290 K---NKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVHCVCAGQSHRT 365 (374)
Q Consensus 290 ~---~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~~~~~~~~~~~~~~ 365 (374)
+ ...........+..+++|++|++++| .+++.....+ ..+++|+.|++++|+ +++..-...+.+++.
T Consensus 268 ~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l-------~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~ 337 (347)
T 4fmz_A 268 KMLNVGSNQISDISVLNNLSQLNSLFLNNN-QLGNEDMEVI-------GGLTNLTTLFLSQNH-ITDIRPLASLSKMDS 337 (347)
T ss_dssp CEEECCSSCCCCCGGGGGCTTCSEEECCSS-CCCGGGHHHH-------HTCTTCSEEECCSSS-CCCCGGGGGCTTCSE
T ss_pred CEEEccCCccCCChhhcCCCCCCEEECcCC-cCCCcChhHh-------hccccCCEEEccCCc-cccccChhhhhccce
Confidence 0 00001111123556788888888884 5665544444 457888999999986 666544444444443
No 15
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.42 E-value=1.6e-11 Score=111.23 Aligned_cols=194 Identities=19% Similarity=0.169 Sum_probs=125.4
Q ss_pred hhccCceeecccccccchH--HHHHHh-hcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHH
Q 017279 77 ICLGLTHLSLSWCKNNMNN--LVLSLA-PKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYAL 153 (374)
Q Consensus 77 ~~~~l~~L~l~~~~~~~~~--~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l 153 (374)
+...++.++++.+...... .+.... ...++|+.|+++ .+.+++.....+...+++|++|+++++ .+++.+...+
T Consensus 70 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls--~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L 146 (372)
T 3un9_A 70 VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLA--SCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDL 146 (372)
T ss_dssp HHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECT--TCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHH
T ss_pred HHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEec--CCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHH
Confidence 3455888888877644322 122222 234688888888 567777777777666778888888886 6777766655
Q ss_pred Hh----cCCCCcEEeecCCCCCCHHHHHHH---HhcCCCCcEEEcCCCccCccHHHHHHH---HhcCCCCCEEeccCCCC
Q 017279 154 AH----GCPNLTRLNISGCTSFSDHALAYL---CGFCRKLKILNLCGCVKAATDYALQAI---GRNCNQLQSLNLGWCED 223 (374)
Q Consensus 154 ~~----~~~~L~~L~L~~~~~~~~~~~~~l---~~~~~~L~~L~L~~~~~~~~~~~~~~l---~~~~~~L~~L~l~~~~~ 223 (374)
.. ..++|++|+|++| .+++.+...+ ...+++|++|+|+++. +.+.....+ ....++|+.|+++++.
T Consensus 147 ~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~--l~~~g~~~L~~~L~~~~~L~~L~Ls~N~- 222 (372)
T 3un9_A 147 RDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTG--LGDEGLELLAAQLDRNRQLQELNVAYNG- 222 (372)
T ss_dssp HHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSS--CHHHHHHHHHHHGGGCSCCCEEECCSSC-
T ss_pred HHHHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCC--CCcHHHHHHHHHHhcCCCcCeEECCCCC-
Confidence 43 3578888888885 6766554443 3457888888888855 666555443 3456788888888854
Q ss_pred CCHHHHHHHHh---cCCCCCeeecCCCCCCCHHHHHHHHhcC-CC---CceEe--cCCCCCCCHH
Q 017279 224 VGDVGVMNLAY---GCPDLRSLDLCGCVCITDDSVIALANGC-PH---LRSLG--LYYCRNITDR 279 (374)
Q Consensus 224 ~~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~l~~l~~~~-~~---L~~L~--l~~~~~i~~~ 279 (374)
+++.+...+.. .+++|++|++++| .+++.+...+.... +. |+.+. +..+. ++++
T Consensus 223 i~~~g~~~l~~~L~~~~~L~~L~Ls~N-~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~-~~~~ 285 (372)
T 3un9_A 223 AGDTAALALARAAREHPSLELLHLYFN-ELSSEGRQVLRDLGGAAEGGARVVVSLTEGTA-VSEY 285 (372)
T ss_dssp CCHHHHHHHHHHHHHCSSCCEEECTTS-SCCHHHHHHHHHCC------CEEECCCC-----CHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCEEeccCC-CCCHHHHHHHHHHhcCCCccchhhHhhhcCCc-cCHH
Confidence 77766555433 4688888888884 68888877776531 11 55665 44432 4444
No 16
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.39 E-value=1.8e-12 Score=116.84 Aligned_cols=215 Identities=20% Similarity=0.161 Sum_probs=111.5
Q ss_pred ccCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCC
Q 017279 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP 158 (374)
Q Consensus 79 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 158 (374)
..+++|+++++....... ...+++|+.|+++ .+....... . ...+++|++|+++++....... ...++
T Consensus 110 ~~L~~L~l~~n~i~~~~~----~~~l~~L~~L~l~-~n~~~~~~~--~-~~~l~~L~~L~l~~~~~~~~~~----~~~l~ 177 (347)
T 4fmz_A 110 TNLRELYLNEDNISDISP----LANLTKMYSLNLG-ANHNLSDLS--P-LSNMTGLNYLTVTESKVKDVTP----IANLT 177 (347)
T ss_dssp TTCSEEECTTSCCCCCGG----GTTCTTCCEEECT-TCTTCCCCG--G-GTTCTTCCEEECCSSCCCCCGG----GGGCT
T ss_pred CcCCEEECcCCcccCchh----hccCCceeEEECC-CCCCccccc--c-hhhCCCCcEEEecCCCcCCchh----hccCC
Confidence 457888887765432211 4466777777776 332222111 1 2335566666666542211111 22355
Q ss_pred CCcEEeecCCCCCCHHHH--------------------HHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEec
Q 017279 159 NLTRLNISGCTSFSDHAL--------------------AYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNL 218 (374)
Q Consensus 159 ~L~~L~L~~~~~~~~~~~--------------------~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l 218 (374)
+|++|+++++ .+..... .. ...+++|++|+++++. +..... ...+++|++|++
T Consensus 178 ~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~--l~~~~~---~~~l~~L~~L~l 250 (347)
T 4fmz_A 178 DLYSLSLNYN-QIEDISPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNK--ITDLSP---LANLSQLTWLEI 250 (347)
T ss_dssp TCSEEECTTS-CCCCCGGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC--CCCCGG---GTTCTTCCEEEC
T ss_pred CCCEEEccCC-cccccccccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCc--cCCCcc---hhcCCCCCEEEC
Confidence 5555555543 2221100 00 2335556666665543 221111 334566666666
Q ss_pred cCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccc
Q 017279 219 GWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWES 298 (374)
Q Consensus 219 ~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~ 298 (374)
+++. +++. .....+++|+.|++++| .++.. . ....+++|+.|++++|. +++.....+.
T Consensus 251 ~~n~-l~~~---~~~~~l~~L~~L~l~~n-~l~~~--~-~~~~l~~L~~L~L~~n~-l~~~~~~~l~------------- 308 (347)
T 4fmz_A 251 GTNQ-ISDI---NAVKDLTKLKMLNVGSN-QISDI--S-VLNNLSQLNSLFLNNNQ-LGNEDMEVIG------------- 308 (347)
T ss_dssp CSSC-CCCC---GGGTTCTTCCEEECCSS-CCCCC--G-GGGGCTTCSEEECCSSC-CCGGGHHHHH-------------
T ss_pred CCCc-cCCC---hhHhcCCCcCEEEccCC-ccCCC--h-hhcCCCCCCEEECcCCc-CCCcChhHhh-------------
Confidence 6543 3321 11234566666666664 33321 1 12346667777776664 5544444444
Q ss_pred cccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCc
Q 017279 299 MKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCL 349 (374)
Q Consensus 299 ~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~ 349 (374)
.+++|++|++++| .+++. +.+..+++|+.|++++|+
T Consensus 309 -----~l~~L~~L~L~~n-~l~~~---------~~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 309 -----GLTNLTTLFLSQN-HITDI---------RPLASLSKMDSADFANQV 344 (347)
T ss_dssp -----TCTTCSEEECCSS-SCCCC---------GGGGGCTTCSEESSSCC-
T ss_pred -----ccccCCEEEccCC-ccccc---------cChhhhhccceeehhhhc
Confidence 4489999999995 46531 224678999999999996
No 17
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.39 E-value=1.4e-13 Score=109.33 Aligned_cols=72 Identities=21% Similarity=0.395 Sum_probs=35.5
Q ss_pred CCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhc---CCCCceEecCCCCCCCHHHHHHHH
Q 017279 212 QLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANG---CPHLRSLGLYYCRNITDRAIYSLA 285 (374)
Q Consensus 212 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~---~~~L~~L~l~~~~~i~~~~~~~l~ 285 (374)
+|+.|++++|. +++.++..+ .+|++|++|++++|..+++.++..+... +++|++|++++|..|++.++..+.
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~ 136 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH 136 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred eEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh
Confidence 35555555543 555444444 2455555555555555555555555431 234555555555555555555443
No 18
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.35 E-value=6.3e-13 Score=105.64 Aligned_cols=92 Identities=15% Similarity=0.264 Sum_probs=66.2
Q ss_pred CCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhc---CCCCCeeecCCCCCCCHHHHHHHHhc
Q 017279 185 KLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYG---CPDLRSLDLCGCVCITDDSVIALANG 261 (374)
Q Consensus 185 ~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~---~~~L~~L~l~~~~~l~~~~l~~l~~~ 261 (374)
+|++|++++|. +++.++..+. .|++|++|++++|..++|.++..+... +++|++|++++|..+|+.++..+.+
T Consensus 62 ~L~~LDLs~~~--Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~- 137 (176)
T 3e4g_A 62 KIQAIDATDSC--IMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH- 137 (176)
T ss_dssp CEEEEEEESCC--CCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG-
T ss_pred eEeEEeCcCCC--ccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc-
Confidence 57777777765 6676666663 577777777777777777777777652 4567777777777777777777653
Q ss_pred CCCCceEecCCCCCCCHHH
Q 017279 262 CPHLRSLGLYYCRNITDRA 280 (374)
Q Consensus 262 ~~~L~~L~l~~~~~i~~~~ 280 (374)
+++|++|++++|+.+++.+
T Consensus 138 ~~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 138 FRNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp CTTCCEEEEESCTTCCCHH
T ss_pred CCCCCEEECCCCCCCCchH
Confidence 7777777777777777654
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.25 E-value=2.5e-13 Score=127.09 Aligned_cols=110 Identities=18% Similarity=0.134 Sum_probs=49.5
Q ss_pred cCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHH-HHhcCC
Q 017279 80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYA-LAHGCP 158 (374)
Q Consensus 80 ~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~-l~~~~~ 158 (374)
.+++|+++.+..... .....+..+++|++|+++ .+.+.......+ ..+++|++|+++++ .++...+.. ....++
T Consensus 55 ~L~~L~L~~n~~~~~-i~~~~~~~l~~L~~L~Ls--~n~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~ 129 (455)
T 3v47_A 55 DLQFLKVEQQTPGLV-IRNNTFRGLSSLIILKLD--YNQFLQLETGAF-NGLANLEVLTLTQC-NLDGAVLSGNFFKPLT 129 (455)
T ss_dssp TCCEEECCCCSTTCE-ECTTTTTTCTTCCEEECT--TCTTCEECTTTT-TTCTTCCEEECTTS-CCBTHHHHSSTTTTCT
T ss_pred cccEEECcCCcccce-ECcccccccccCCEEeCC--CCccCccChhhc-cCcccCCEEeCCCC-CCCccccCcccccCcc
Confidence 366666665432110 011223355666666666 333332211111 23566666666665 333322221 123356
Q ss_pred CCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCc
Q 017279 159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV 195 (374)
Q Consensus 159 ~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 195 (374)
+|++|+++++ .+.......+...+++|++|+++++.
T Consensus 130 ~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~ 165 (455)
T 3v47_A 130 SLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFNK 165 (455)
T ss_dssp TCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred cCCEEECCCC-ccCccCcccccCCCCcccEEeCCCCc
Confidence 6666666653 23221111123346666666666543
No 20
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.23 E-value=1.5e-13 Score=122.89 Aligned_cols=59 Identities=24% Similarity=0.337 Sum_probs=24.5
Q ss_pred CCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCC
Q 017279 210 CNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCR 274 (374)
Q Consensus 210 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~ 274 (374)
+++|++|+++++. ++. +......+++|++|++++| .++. +..-...+++|+.|++++|.
T Consensus 182 l~~L~~L~L~~n~-l~~--lp~~l~~l~~L~~L~L~~N-~l~~--l~~~l~~l~~L~~L~Ls~n~ 240 (328)
T 4fcg_A 182 LVNLQSLRLEWTG-IRS--LPASIANLQNLKSLKIRNS-PLSA--LGPAIHHLPKLEELDLRGCT 240 (328)
T ss_dssp STTCCEEEEEEEC-CCC--CCGGGGGCTTCCEEEEESS-CCCC--CCGGGGGCTTCCEEECTTCT
T ss_pred CCCCCEEECcCCC-cCc--chHhhcCCCCCCEEEccCC-CCCc--CchhhccCCCCCEEECcCCc
Confidence 4555555555432 221 1111234455555555553 2221 11112235555555555543
No 21
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.22 E-value=1.2e-12 Score=122.50 Aligned_cols=250 Identities=13% Similarity=0.058 Sum_probs=121.4
Q ss_pred ccCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHH-HHHhCCCCCEEecCCCCCCCHHHHHHHHhcC
Q 017279 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEA-IANSCHDLQDLDLSKSFKLSDRSLYALAHGC 157 (374)
Q Consensus 79 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 157 (374)
..+++|+++++.... .....+..+++|++|+++ .+.+++..... ....+++|++|+++++ .++......+...+
T Consensus 79 ~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~--~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l 153 (455)
T 3v47_A 79 SSLIILKLDYNQFLQ--LETGAFNGLANLEVLTLT--QCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNM 153 (455)
T ss_dssp TTCCEEECTTCTTCE--ECTTTTTTCTTCCEEECT--TSCCBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGC
T ss_pred ccCCEEeCCCCccCc--cChhhccCcccCCEEeCC--CCCCCccccCcccccCcccCCEEECCCC-ccCccCcccccCCC
Confidence 447777777654321 112234456777777777 44454432221 1233667777777765 23222111222346
Q ss_pred CCCcEEeecCCCCCCH---HHHHHH------------------------------HhcCCCCcEEEcCCCccCccHHHHH
Q 017279 158 PNLTRLNISGCTSFSD---HALAYL------------------------------CGFCRKLKILNLCGCVKAATDYALQ 204 (374)
Q Consensus 158 ~~L~~L~L~~~~~~~~---~~~~~l------------------------------~~~~~~L~~L~L~~~~~~~~~~~~~ 204 (374)
++|++|+++++. +.. ..+..+ ...+++|++|+++++. +......
T Consensus 154 ~~L~~L~L~~n~-l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~--l~~~~~~ 230 (455)
T 3v47_A 154 RRFHVLDLTFNK-VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG--FKESMAK 230 (455)
T ss_dssp TTCCEEECTTCC-BSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC--CCHHHHH
T ss_pred CcccEEeCCCCc-ccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCc--ccccchh
Confidence 677777776532 211 111000 1123567777777654 3433332
Q ss_pred HHHh--------------------------------------cCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCC
Q 017279 205 AIGR--------------------------------------NCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCG 246 (374)
Q Consensus 205 ~l~~--------------------------------------~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 246 (374)
.+.. ..++|+.|+++++. +.+. .......+++|++|++++
T Consensus 231 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~Ls~ 308 (455)
T 3v47_A 231 RFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK-IFAL-LKSVFSHFTDLEQLTLAQ 308 (455)
T ss_dssp HHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSC-CCEE-CTTTTTTCTTCCEEECTT
T ss_pred hhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcc-cccc-chhhcccCCCCCEEECCC
Confidence 2221 12467777776643 3321 112234567788888877
Q ss_pred CCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcC-CCCCC-----ccccccccccCCCCCcEEecCCCCCCC
Q 017279 247 CVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSG-VKNKP-----GIWESMKGRYDEEGLQSLNISQCTALT 320 (374)
Q Consensus 247 ~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~-~~~~~-----~~~~~~~~~~~~~~L~~L~l~~~~~l~ 320 (374)
| .++......+ ..+++|+.|++++|. ++......+.... ++... ........+..+++|++|++++ +.++
T Consensus 309 n-~l~~~~~~~~-~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~ 384 (455)
T 3v47_A 309 N-EINKIDDNAF-WGLTHLLKLNLSQNF-LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDT-NQLK 384 (455)
T ss_dssp S-CCCEECTTTT-TTCTTCCEEECCSSC-CCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCS
T ss_pred C-cccccChhHh-cCcccCCEEECCCCc-cCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCC-Cccc
Confidence 4 3432211112 246777777777764 4321111111110 00000 0001112356678888888887 4555
Q ss_pred HHHHHHHHhhCCCccCCCCCceEEecCCc
Q 017279 321 PPAVQALCDTFPALHTCSGRHSLVMSGCL 349 (374)
Q Consensus 321 ~~~l~~l~~~~~~l~~~~~L~~L~ls~C~ 349 (374)
.... ..+..+++|+.|++++++
T Consensus 385 ~~~~-------~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 385 SVPD-------GIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CCCT-------TTTTTCTTCCEEECCSSC
T ss_pred cCCH-------hHhccCCcccEEEccCCC
Confidence 2110 023567888888888775
No 22
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.19 E-value=1.2e-12 Score=118.31 Aligned_cols=233 Identities=14% Similarity=0.072 Sum_probs=113.0
Q ss_pred cCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCC
Q 017279 80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPN 159 (374)
Q Consensus 80 ~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 159 (374)
.++.|+++++.... .....+..+++|+.|+++ .+.++..... ....+++|++|+++++ .++.-........+++
T Consensus 77 ~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls--~n~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~ 150 (353)
T 2z80_A 77 NLQALVLTSNGINT--IEEDSFSSLGSLEHLDLS--YNYLSNLSSS-WFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTK 150 (353)
T ss_dssp TCCEEECTTSCCCE--ECTTTTTTCTTCCEEECC--SSCCSSCCHH-HHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTT
T ss_pred CCCEEECCCCccCc--cCHhhcCCCCCCCEEECC--CCcCCcCCHh-HhCCCccCCEEECCCC-CCcccCchhhhccCCC
Confidence 36666665543221 111223355666666666 3333321111 1233566666666664 2221000001223566
Q ss_pred CcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCC
Q 017279 160 LTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDL 239 (374)
Q Consensus 160 L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 239 (374)
|++|+++++..+.... ......+++|++|+++++. +.... ......+++|++|+++++. ++... ......+++|
T Consensus 151 L~~L~l~~n~~~~~~~-~~~~~~l~~L~~L~l~~n~--l~~~~-~~~l~~l~~L~~L~l~~n~-l~~~~-~~~~~~~~~L 224 (353)
T 2z80_A 151 LQILRVGNMDTFTKIQ-RKDFAGLTFLEELEIDASD--LQSYE-PKSLKSIQNVSHLILHMKQ-HILLL-EIFVDVTSSV 224 (353)
T ss_dssp CCEEEEEESSSCCEEC-TTTTTTCCEEEEEEEEETT--CCEEC-TTTTTTCSEEEEEEEECSC-STTHH-HHHHHHTTTE
T ss_pred CcEEECCCCccccccC-HHHccCCCCCCEEECCCCC--cCccC-HHHHhccccCCeecCCCCc-cccch-hhhhhhcccc
Confidence 6666666542222110 0112235666666666543 22110 1112345666666666543 33221 2223345667
Q ss_pred CeeecCCCCCCCHHHHHH--HHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCC
Q 017279 240 RSLDLCGCVCITDDSVIA--LANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCT 317 (374)
Q Consensus 240 ~~L~l~~~~~l~~~~l~~--l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 317 (374)
+.|+++++ .++...... .....+.++.+++.++. +++..+..+... +..+++|++|+++++
T Consensus 225 ~~L~L~~n-~l~~~~~~~l~~~~~~~~l~~l~L~~~~-l~~~~l~~l~~~--------------l~~l~~L~~L~Ls~N- 287 (353)
T 2z80_A 225 ECLELRDT-DLDTFHFSELSTGETNSLIKKFTFRNVK-ITDESLFQVMKL--------------LNQISGLLELEFSRN- 287 (353)
T ss_dssp EEEEEESC-BCTTCCCC------CCCCCCEEEEESCB-CCHHHHHHHHHH--------------HHTCTTCCEEECCSS-
T ss_pred cEEECCCC-ccccccccccccccccchhhcccccccc-ccCcchhhhHHH--------------HhcccCCCEEECCCC-
Confidence 77777664 333211110 11235566666666663 665555444321 234689999999984
Q ss_pred CCCHHHHHHHHhhCCC--ccCCCCCceEEecCCcc
Q 017279 318 ALTPPAVQALCDTFPA--LHTCSGRHSLVMSGCLN 350 (374)
Q Consensus 318 ~l~~~~l~~l~~~~~~--l~~~~~L~~L~ls~C~~ 350 (374)
.++. +|. +..+++|+.|++++++-
T Consensus 288 ~l~~---------i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 288 QLKS---------VPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp CCCC---------CCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCc---------cCHHHHhcCCCCCEEEeeCCCc
Confidence 5652 231 36789999999999963
No 23
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.17 E-value=3.1e-13 Score=120.79 Aligned_cols=222 Identities=20% Similarity=0.238 Sum_probs=141.9
Q ss_pred ccCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCC
Q 017279 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP 158 (374)
Q Consensus 79 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 158 (374)
..++.|+++.+... . ++.....+++|++|+++ .+.+.. ....+ ..+++|++|+++++ .++ .+......++
T Consensus 81 ~~l~~L~L~~n~l~--~-lp~~l~~l~~L~~L~L~--~n~l~~-lp~~~-~~l~~L~~L~Ls~n-~l~--~lp~~l~~l~ 150 (328)
T 4fcg_A 81 PGRVALELRSVPLP--Q-FPDQAFRLSHLQHMTID--AAGLME-LPDTM-QQFAGLETLTLARN-PLR--ALPASIASLN 150 (328)
T ss_dssp TTCCEEEEESSCCS--S-CCSCGGGGTTCSEEEEE--SSCCCC-CCSCG-GGGTTCSEEEEESC-CCC--CCCGGGGGCT
T ss_pred cceeEEEccCCCch--h-cChhhhhCCCCCEEECC--CCCccc-hhHHH-hccCCCCEEECCCC-ccc--cCcHHHhcCc
Confidence 45888999876543 1 22223458899999999 444441 11222 45789999999987 343 1222234589
Q ss_pred CCcEEeecCCCCCCHHHHH-------HHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHH
Q 017279 159 NLTRLNISGCTSFSDHALA-------YLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMN 231 (374)
Q Consensus 159 ~L~~L~L~~~~~~~~~~~~-------~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~ 231 (374)
+|++|++++|......... .....+++|++|+++++. +. .+......+++|++|+++++. +.. +..
T Consensus 151 ~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~--l~--~lp~~l~~l~~L~~L~L~~N~-l~~--l~~ 223 (328)
T 4fcg_A 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG--IR--SLPASIANLQNLKSLKIRNSP-LSA--LGP 223 (328)
T ss_dssp TCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC--CC--CCCGGGGGCTTCCEEEEESSC-CCC--CCG
T ss_pred CCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC--cC--cchHhhcCCCCCCEEEccCCC-CCc--Cch
Confidence 9999999876433211000 001238999999999854 33 222335578999999999864 432 222
Q ss_pred HHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEE
Q 017279 232 LAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSL 311 (374)
Q Consensus 232 l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L 311 (374)
....+++|+.|++++|..... +......+++|+.|++++|..... .+..+..+++|++|
T Consensus 224 ~l~~l~~L~~L~Ls~n~~~~~--~p~~~~~l~~L~~L~L~~n~~~~~-------------------~p~~~~~l~~L~~L 282 (328)
T 4fcg_A 224 AIHHLPKLEELDLRGCTALRN--YPPIFGGRAPLKRLILKDCSNLLT-------------------LPLDIHRLTQLEKL 282 (328)
T ss_dssp GGGGCTTCCEEECTTCTTCCB--CCCCTTCCCCCCEEECTTCTTCCB-------------------CCTTGGGCTTCCEE
T ss_pred hhccCCCCCEEECcCCcchhh--hHHHhcCCCCCCEEECCCCCchhh-------------------cchhhhcCCCCCEE
Confidence 245789999999999754431 112223589999999999863321 01123356999999
Q ss_pred ecCCCCCCCHHHHHHHHhhCC-CccCCCCCceEEecC
Q 017279 312 NISQCTALTPPAVQALCDTFP-ALHTCSGRHSLVMSG 347 (374)
Q Consensus 312 ~l~~~~~l~~~~l~~l~~~~~-~l~~~~~L~~L~ls~ 347 (374)
++++|.... .+| .+..+++|+.+++..
T Consensus 283 ~L~~n~~~~---------~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 283 DLRGCVNLS---------RLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp ECTTCTTCC---------CCCGGGGGSCTTCEEECCG
T ss_pred eCCCCCchh---------hccHHHhhccCceEEeCCH
Confidence 999976544 234 457788999998874
No 24
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.16 E-value=1.6e-10 Score=108.43 Aligned_cols=210 Identities=18% Similarity=0.205 Sum_probs=98.9
Q ss_pred hhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHH
Q 017279 101 APKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLC 180 (374)
Q Consensus 101 ~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~ 180 (374)
...+++|+.|+++ .+.+.... . ...+++|++|+++++. +..... ...+++|+.|+++++ .+... . ..
T Consensus 173 ~~~l~~L~~L~l~--~n~l~~~~--~-l~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n-~l~~~--~-~l 239 (466)
T 1o6v_A 173 LANLTTLERLDIS--SNKVSDIS--V-LAKLTNLESLIATNNQ-ISDITP---LGILTNLDELSLNGN-QLKDI--G-TL 239 (466)
T ss_dssp GTTCTTCCEEECC--SSCCCCCG--G-GGGCTTCSEEECCSSC-CCCCGG---GGGCTTCCEEECCSS-CCCCC--G-GG
T ss_pred hccCCCCCEEECc--CCcCCCCh--h-hccCCCCCEEEecCCc-cccccc---ccccCCCCEEECCCC-Ccccc--h-hh
Confidence 3456677777776 23333211 1 2346667777776652 222111 223566666666653 23221 1 12
Q ss_pred hcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHh
Q 017279 181 GFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALAN 260 (374)
Q Consensus 181 ~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~ 260 (374)
..+++|++|+++++. +.... . ...+++|+.|+++++. +.+.. . ...+++|+.|++++|. ++... . ..
T Consensus 240 ~~l~~L~~L~l~~n~--l~~~~--~-~~~l~~L~~L~l~~n~-l~~~~--~-~~~l~~L~~L~L~~n~-l~~~~--~-~~ 306 (466)
T 1o6v_A 240 ASLTNLTDLDLANNQ--ISNLA--P-LSGLTKLTELKLGANQ-ISNIS--P-LAGLTALTNLELNENQ-LEDIS--P-IS 306 (466)
T ss_dssp GGCTTCSEEECCSSC--CCCCG--G-GTTCTTCSEEECCSSC-CCCCG--G-GTTCTTCSEEECCSSC-CSCCG--G-GG
T ss_pred hcCCCCCEEECCCCc--cccch--h-hhcCCCCCEEECCCCc-cCccc--c-ccCCCccCeEEcCCCc-ccCch--h-hc
Confidence 345666666666543 22111 1 3345666666666543 22211 1 2345666666666642 32111 1 22
Q ss_pred cCCCCceEecCCCCCCCHHHHHHHHhcC-CC---CCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccC
Q 017279 261 GCPHLRSLGLYYCRNITDRAIYSLAQSG-VK---NKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHT 336 (374)
Q Consensus 261 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~-~~---~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~ 336 (374)
.+++|+.|++++|. +++... +.... .+ ...........+..+++|+.|++++| .+++.. | +..
T Consensus 307 ~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n-~l~~~~--------~-~~~ 373 (466)
T 1o6v_A 307 NLKNLTYLTLYFNN-ISDISP--VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHN-QISDLT--------P-LAN 373 (466)
T ss_dssp GCTTCSEEECCSSC-CSCCGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCBCG--------G-GTT
T ss_pred CCCCCCEEECcCCc-CCCchh--hccCccCCEeECCCCccCCchhhccCCCCCEEeCCCC-ccCccc--------h-hhc
Confidence 35666666666553 332110 11000 00 00000011123456688888888874 454311 1 467
Q ss_pred CCCCceEEecCCc
Q 017279 337 CSGRHSLVMSGCL 349 (374)
Q Consensus 337 ~~~L~~L~ls~C~ 349 (374)
+++|+.|++++|+
T Consensus 374 l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 374 LTRITQLGLNDQA 386 (466)
T ss_dssp CTTCCEEECCCEE
T ss_pred CCCCCEEeccCCc
Confidence 7888888888884
No 25
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.16 E-value=5.6e-13 Score=116.73 Aligned_cols=207 Identities=18% Similarity=0.125 Sum_probs=109.1
Q ss_pred CCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcC
Q 017279 104 LTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFC 183 (374)
Q Consensus 104 ~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~ 183 (374)
.++++.|+++ .+.++......+ ..+++|++|+++++ .++......+ ..+++|++|+++++..+.... ......+
T Consensus 31 ~~~l~~L~l~--~n~i~~~~~~~~-~~~~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n~~l~~~~-~~~~~~l 104 (285)
T 1ozn_A 31 PAASQRIFLH--GNRISHVPAASF-RACRNLTILWLHSN-VLARIDAAAF-TGLALLEQLDLSDNAQLRSVD-PATFHGL 104 (285)
T ss_dssp CTTCSEEECT--TSCCCEECTTTT-TTCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSCTTCCCCC-TTTTTTC
T ss_pred CCCceEEEee--CCcCCccCHHHc-ccCCCCCEEECCCC-ccceeCHhhc-CCccCCCEEeCCCCCCccccC-HHHhcCC
Confidence 3567777777 344433221112 33677777777765 3332111112 236777777777643232211 1122346
Q ss_pred CCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCC
Q 017279 184 RKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCP 263 (374)
Q Consensus 184 ~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~ 263 (374)
++|++|+++++. +.... ......+++|++|+++++. ++... ......+++|+.|+++++ .++.... .....++
T Consensus 105 ~~L~~L~l~~n~--l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~ 177 (285)
T 1ozn_A 105 GRLHTLHLDRCG--LQELG-PGLFRGLAALQYLYLQDNA-LQALP-DDTFRDLGNLTHLFLHGN-RISSVPE-RAFRGLH 177 (285)
T ss_dssp TTCCEEECTTSC--CCCCC-TTTTTTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSS-CCCEECT-TTTTTCT
T ss_pred cCCCEEECCCCc--CCEEC-HhHhhCCcCCCEEECCCCc-ccccC-HhHhccCCCccEEECCCC-cccccCH-HHhcCcc
Confidence 778888877754 22111 1223456778888887643 32211 111235677888888874 3432111 1122467
Q ss_pred CCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceE
Q 017279 264 HLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSL 343 (374)
Q Consensus 264 ~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L 343 (374)
+|+.|+++++. ++.... ..+..+++|+.|+++++ .++...... +..+++|+.|
T Consensus 178 ~L~~L~l~~n~-l~~~~~------------------~~~~~l~~L~~L~l~~n-~l~~~~~~~-------~~~l~~L~~L 230 (285)
T 1ozn_A 178 SLDRLLLHQNR-VAHVHP------------------HAFRDLGRLMTLYLFAN-NLSALPTEA-------LAPLRALQYL 230 (285)
T ss_dssp TCCEEECCSSC-CCEECT------------------TTTTTCTTCCEEECCSS-CCSCCCHHH-------HTTCTTCCEE
T ss_pred ccCEEECCCCc-ccccCH------------------hHccCcccccEeeCCCC-cCCcCCHHH-------cccCcccCEE
Confidence 78888887774 432111 11234578888888873 555422222 2456778888
Q ss_pred EecCCcc
Q 017279 344 VMSGCLN 350 (374)
Q Consensus 344 ~ls~C~~ 350 (374)
++++++-
T Consensus 231 ~l~~N~~ 237 (285)
T 1ozn_A 231 RLNDNPW 237 (285)
T ss_dssp ECCSSCE
T ss_pred eccCCCc
Confidence 8887753
No 26
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.15 E-value=3.5e-11 Score=106.44 Aligned_cols=168 Identities=17% Similarity=0.225 Sum_probs=86.3
Q ss_pred hCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhc
Q 017279 130 SCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRN 209 (374)
Q Consensus 130 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~ 209 (374)
.+++|++|+++++ .+.+.. . ...+++|++|+++++ .+... . ....+++|++|+++++. +... .. ...
T Consensus 61 ~l~~L~~L~L~~n-~i~~~~--~-~~~l~~L~~L~L~~n-~l~~~--~-~~~~l~~L~~L~l~~n~--l~~~--~~-l~~ 127 (308)
T 1h6u_A 61 YLNNLIGLELKDN-QITDLA--P-LKNLTKITELELSGN-PLKNV--S-AIAGLQSIKTLDLTSTQ--ITDV--TP-LAG 127 (308)
T ss_dssp GCTTCCEEECCSS-CCCCCG--G-GTTCCSCCEEECCSC-CCSCC--G-GGTTCTTCCEEECTTSC--CCCC--GG-GTT
T ss_pred ccCCCCEEEccCC-cCCCCh--h-HccCCCCCEEEccCC-cCCCc--h-hhcCCCCCCEEECCCCC--CCCc--hh-hcC
Confidence 3566666666664 222211 1 233566666666653 23221 1 13346666777766644 2221 11 345
Q ss_pred CCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCC
Q 017279 210 CNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGV 289 (374)
Q Consensus 210 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~ 289 (374)
+++|+.|+++++. +++.. . ...+++|+.|++++| .+++.. . ...+++|+.|+++++. +++... +
T Consensus 128 l~~L~~L~l~~n~-l~~~~--~-l~~l~~L~~L~l~~n-~l~~~~--~-l~~l~~L~~L~l~~n~-l~~~~~--l----- 191 (308)
T 1h6u_A 128 LSNLQVLYLDLNQ-ITNIS--P-LAGLTNLQYLSIGNA-QVSDLT--P-LANLSKLTTLKADDNK-ISDISP--L----- 191 (308)
T ss_dssp CTTCCEEECCSSC-CCCCG--G-GGGCTTCCEEECCSS-CCCCCG--G-GTTCTTCCEEECCSSC-CCCCGG--G-----
T ss_pred CCCCCEEECCCCc-cCcCc--c-ccCCCCccEEEccCC-cCCCCh--h-hcCCCCCCEEECCCCc-cCcChh--h-----
Confidence 6677777776643 32211 1 345667777777764 343211 1 2346777777777664 332110 1
Q ss_pred CCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCc
Q 017279 290 KNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCL 349 (374)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~ 349 (374)
..+++|++|+++++ .+++. +.+..+++|+.|++++|+
T Consensus 192 -------------~~l~~L~~L~L~~N-~l~~~---------~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 192 -------------ASLPNLIEVHLKNN-QISDV---------SPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp -------------GGCTTCCEEECTTS-CCCBC---------GGGTTCTTCCEEEEEEEE
T ss_pred -------------cCCCCCCEEEccCC-ccCcc---------ccccCCCCCCEEEccCCe
Confidence 13467777777773 45421 123566777777777764
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.14 E-value=4.4e-10 Score=105.37 Aligned_cols=231 Identities=19% Similarity=0.161 Sum_probs=143.9
Q ss_pred ccCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCC
Q 017279 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP 158 (374)
Q Consensus 79 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 158 (374)
..+++|+++.+...... ....+++|+.|.+. +....... ...+++|++|+++++. +... .. ...++
T Consensus 134 ~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~l~--~~~~~~~~----~~~l~~L~~L~l~~n~-l~~~--~~-l~~l~ 199 (466)
T 1o6v_A 134 TNLNRLELSSNTISDIS----ALSGLTSLQQLSFG--NQVTDLKP----LANLTTLERLDISSNK-VSDI--SV-LAKLT 199 (466)
T ss_dssp TTCSEEEEEEEEECCCG----GGTTCTTCSEEEEE--ESCCCCGG----GTTCTTCCEEECCSSC-CCCC--GG-GGGCT
T ss_pred CCCCEEECCCCccCCCh----hhccCCcccEeecC--CcccCchh----hccCCCCCEEECcCCc-CCCC--hh-hccCC
Confidence 55899999887644321 25678999999998 22222111 3458999999999974 3332 22 34589
Q ss_pred CCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCC
Q 017279 159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPD 238 (374)
Q Consensus 159 ~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 238 (374)
+|++|+++++. +.... . ...+++|++|+++++. +... . ....+++|+.|+++++. +.... . ...+++
T Consensus 200 ~L~~L~l~~n~-l~~~~--~-~~~l~~L~~L~l~~n~--l~~~--~-~l~~l~~L~~L~l~~n~-l~~~~--~-~~~l~~ 266 (466)
T 1o6v_A 200 NLESLIATNNQ-ISDIT--P-LGILTNLDELSLNGNQ--LKDI--G-TLASLTNLTDLDLANNQ-ISNLA--P-LSGLTK 266 (466)
T ss_dssp TCSEEECCSSC-CCCCG--G-GGGCTTCCEEECCSSC--CCCC--G-GGGGCTTCSEEECCSSC-CCCCG--G-GTTCTT
T ss_pred CCCEEEecCCc-ccccc--c-ccccCCCCEEECCCCC--cccc--h-hhhcCCCCCEEECCCCc-cccch--h-hhcCCC
Confidence 99999999853 33221 1 4568999999999865 3321 1 23468999999999865 33321 1 457899
Q ss_pred CCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcC-CCCCCcccccc---ccccCCCCCcEEecC
Q 017279 239 LRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSG-VKNKPGIWESM---KGRYDEEGLQSLNIS 314 (374)
Q Consensus 239 L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~-~~~~~~~~~~~---~~~~~~~~L~~L~l~ 314 (374)
|+.|++++| .++... . ...+++|+.|++++|. +++... +.... .+......+.. ..+..+++|+.|+++
T Consensus 267 L~~L~l~~n-~l~~~~--~-~~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~ 339 (466)
T 1o6v_A 267 LTELKLGAN-QISNIS--P-LAGLTALTNLELNENQ-LEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFY 339 (466)
T ss_dssp CSEEECCSS-CCCCCG--G-GTTCTTCSEEECCSSC-CSCCGG--GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECC
T ss_pred CCEEECCCC-ccCccc--c-ccCCCccCeEEcCCCc-ccCchh--hcCCCCCCEEECcCCcCCCchhhccCccCCEeECC
Confidence 999999996 444321 1 3458999999999985 443111 11110 00001111111 125567777777777
Q ss_pred CCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCcccccc
Q 017279 315 QCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSV 354 (374)
Q Consensus 315 ~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~~~ 354 (374)
+| .+++ .+.+..+++|+.|++++|. +++.
T Consensus 340 ~n-~l~~---------~~~l~~l~~L~~L~l~~n~-l~~~ 368 (466)
T 1o6v_A 340 NN-KVSD---------VSSLANLTNINWLSAGHNQ-ISDL 368 (466)
T ss_dssp SS-CCCC---------CGGGTTCTTCCEEECCSSC-CCBC
T ss_pred CC-ccCC---------chhhccCCCCCEEeCCCCc-cCcc
Confidence 74 4543 1234667888888888874 4443
No 28
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.14 E-value=5.8e-14 Score=124.35 Aligned_cols=228 Identities=18% Similarity=0.115 Sum_probs=136.2
Q ss_pred cCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHH--HHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcC
Q 017279 80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNA--VEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC 157 (374)
Q Consensus 80 ~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 157 (374)
.+++|+++.+... ......+..+++|+.|+++ .+.+.... ...+ ..+++|++|+++++. +.. +......+
T Consensus 29 ~l~~L~L~~n~l~--~i~~~~~~~l~~L~~L~L~--~n~l~~~~~~~~~~-~~~~~L~~L~Ls~n~-i~~--l~~~~~~l 100 (306)
T 2z66_A 29 SATRLELESNKLQ--SLPHGVFDKLTQLTKLSLS--SNGLSFKGCCSQSD-FGTTSLKYLDLSFNG-VIT--MSSNFLGL 100 (306)
T ss_dssp TCCEEECCSSCCC--CCCTTTTTTCTTCSEEECC--SSCCCEEEEEEHHH-HSCSCCCEEECCSCS-EEE--EEEEEETC
T ss_pred CCCEEECCCCccC--ccCHhHhhccccCCEEECC--CCccCcccCccccc-ccccccCEEECCCCc-ccc--ChhhcCCC
Confidence 3777888766433 2222334678899999998 44554211 1122 237899999999873 321 11112347
Q ss_pred CCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCC
Q 017279 158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCP 237 (374)
Q Consensus 158 ~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 237 (374)
++|++|+++++ .+...........+++|++|+++++. +... .......+++|++|+++++. +.+.........++
T Consensus 101 ~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~--l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~ 175 (306)
T 2z66_A 101 EQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTH--TRVA-FNGIFNGLSSLEVLKMAGNS-FQENFLPDIFTELR 175 (306)
T ss_dssp TTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSC--CEEC-STTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCT
T ss_pred CCCCEEECCCC-cccccccchhhhhccCCCEEECCCCc--CCcc-chhhcccCcCCCEEECCCCc-cccccchhHHhhCc
Confidence 89999999874 33221111223457899999998854 2221 12223457899999998753 33211222334678
Q ss_pred CCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCC
Q 017279 238 DLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCT 317 (374)
Q Consensus 238 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 317 (374)
+|+.|++++| .++......+ ..+++|+.|+++++. ++..... .+..+++|++|+++++
T Consensus 176 ~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~~~------------------~~~~l~~L~~L~L~~N- 233 (306)
T 2z66_A 176 NLTFLDLSQC-QLEQLSPTAF-NSLSSLQVLNMSHNN-FFSLDTF------------------PYKCLNSLQVLDYSLN- 233 (306)
T ss_dssp TCCEEECTTS-CCCEECTTTT-TTCTTCCEEECTTSC-CSBCCSG------------------GGTTCTTCCEEECTTS-
T ss_pred CCCEEECCCC-CcCCcCHHHh-cCCCCCCEEECCCCc-cCccChh------------------hccCcccCCEeECCCC-
Confidence 9999999985 4543211222 357899999998885 4321111 1234689999999984
Q ss_pred CCCHHHHHHHHhhCCCccCCC-CCceEEecCCc
Q 017279 318 ALTPPAVQALCDTFPALHTCS-GRHSLVMSGCL 349 (374)
Q Consensus 318 ~l~~~~l~~l~~~~~~l~~~~-~L~~L~ls~C~ 349 (374)
.++.... ..+..+| +|+.|++++++
T Consensus 234 ~l~~~~~-------~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 234 HIMTSKK-------QELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CCCBCSS-------SSCCCCCTTCCEEECTTCC
T ss_pred CCcccCH-------HHHHhhhccCCEEEccCCC
Confidence 5653111 1345564 89999999986
No 29
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.13 E-value=6e-12 Score=111.62 Aligned_cols=209 Identities=21% Similarity=0.190 Sum_probs=118.2
Q ss_pred cCCCCcEEEeeCCCCCCChHHHHHH-HHhCCCCCEEecCCCCCCCHH--HHHHHHh-cCCCCcEEeecCCCCCCHHHHHH
Q 017279 103 KLTKLQTLVLRQDKPQLEDNAVEAI-ANSCHDLQDLDLSKSFKLSDR--SLYALAH-GCPNLTRLNISGCTSFSDHALAY 178 (374)
Q Consensus 103 ~~~~L~~L~l~~~~~~~~~~~~~~l-~~~~~~L~~L~l~~~~~~~~~--~~~~l~~-~~~~L~~L~L~~~~~~~~~~~~~ 178 (374)
.+++|++|+++ .+.+.......+ ...+++|++|+++++ .++.. .+..+.. ..++|++|+++++ .+..... .
T Consensus 93 ~l~~L~~L~L~--~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~-~ 167 (312)
T 1wwl_A 93 GISGLQELTLE--NLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSC-E 167 (312)
T ss_dssp TTSCCCEEEEE--EEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCT-T
T ss_pred CcCCccEEEcc--CCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchH-H
Confidence 46788888887 333332111111 134678888888876 33322 2222221 1278888888874 3332111 1
Q ss_pred HHhcCCCCcEEEcCCCccCccH-HHHHHHH--hcCCCCCEEeccCCCCCCH--HHHHHHHhcCCCCCeeecCCCCCCCHH
Q 017279 179 LCGFCRKLKILNLCGCVKAATD-YALQAIG--RNCNQLQSLNLGWCEDVGD--VGVMNLAYGCPDLRSLDLCGCVCITDD 253 (374)
Q Consensus 179 l~~~~~~L~~L~L~~~~~~~~~-~~~~~l~--~~~~~L~~L~l~~~~~~~~--~~~~~l~~~~~~L~~L~l~~~~~l~~~ 253 (374)
....+++|++|+++++. +.. ..+..-. ..+++|++|+++++. ++. .....+...+++|+.|+++++ .++..
T Consensus 168 ~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~ 243 (312)
T 1wwl_A 168 QVRVFPALSTLDLSDNP--ELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHN-SLRDA 243 (312)
T ss_dssp TCCCCSSCCEEECCSCT--TCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTS-CCCSS
T ss_pred HhccCCCCCEEECCCCC--cCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCC-cCCcc
Confidence 22357888888888754 232 2222222 567888888888754 442 222344556788888888884 44432
Q ss_pred HHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCC
Q 017279 254 SVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPA 333 (374)
Q Consensus 254 ~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~ 333 (374)
........+++|+.|+++++. ++. +.. .+ .++|++|++++ +.++. .|.
T Consensus 244 ~~~~~~~~l~~L~~L~Ls~N~-l~~-----ip~--------------~~--~~~L~~L~Ls~-N~l~~---------~p~ 291 (312)
T 1wwl_A 244 AGAPSCDWPSQLNSLNLSFTG-LKQ-----VPK--------------GL--PAKLSVLDLSY-NRLDR---------NPS 291 (312)
T ss_dssp CCCSCCCCCTTCCEEECTTSC-CSS-----CCS--------------SC--CSEEEEEECCS-SCCCS---------CCC
T ss_pred cchhhhhhcCCCCEEECCCCc-cCh-----hhh--------------hc--cCCceEEECCC-CCCCC---------Chh
Confidence 100111235788888888875 441 100 11 16888899988 46653 244
Q ss_pred ccCCCCCceEEecCCccccc
Q 017279 334 LHTCSGRHSLVMSGCLNLTS 353 (374)
Q Consensus 334 l~~~~~L~~L~ls~C~~l~~ 353 (374)
+..+++|+.|++++++ +++
T Consensus 292 ~~~l~~L~~L~L~~N~-l~~ 310 (312)
T 1wwl_A 292 PDELPQVGNLSLKGNP-FLD 310 (312)
T ss_dssp TTTSCEEEEEECTTCT-TTC
T ss_pred HhhCCCCCEEeccCCC-CCC
Confidence 5677888999988874 443
No 30
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.12 E-value=2.9e-13 Score=126.12 Aligned_cols=225 Identities=17% Similarity=0.147 Sum_probs=130.6
Q ss_pred CceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q 017279 81 LTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNL 160 (374)
Q Consensus 81 l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 160 (374)
++.|+++.+..... ....+..+++|+.|+++ .+.+.......+ ..+++|++|+++++ .++.... .....+++|
T Consensus 66 l~~L~L~~n~i~~~--~~~~~~~l~~L~~L~Ls--~n~i~~i~~~~~-~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L 138 (440)
T 3zyj_A 66 TRLLNLHENQIQII--KVNSFKHLRHLEILQLS--RNHIRTIEIGAF-NGLANLNTLELFDN-RLTTIPN-GAFVYLSKL 138 (440)
T ss_dssp CSEEECCSCCCCEE--CTTTTSSCSSCCEEECC--SSCCCEECGGGG-TTCSSCCEEECCSS-CCSSCCT-TTSCSCSSC
T ss_pred CcEEEccCCcCCee--CHHHhhCCCCCCEEECC--CCcCCccChhhc-cCCccCCEEECCCC-cCCeeCH-hHhhccccC
Confidence 66777776543321 12334577888888888 444443222222 34788888888886 3332111 112346888
Q ss_pred cEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCC
Q 017279 161 TRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLR 240 (374)
Q Consensus 161 ~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 240 (374)
++|+++++ .+.... ......+++|++|+++++.. +.. .....+..+++|+.|+++++. ++.. .. ...+++|+
T Consensus 139 ~~L~L~~N-~i~~~~-~~~~~~l~~L~~L~l~~~~~-l~~-i~~~~~~~l~~L~~L~L~~n~-l~~~--~~-~~~l~~L~ 210 (440)
T 3zyj_A 139 KELWLRNN-PIESIP-SYAFNRIPSLRRLDLGELKR-LSY-ISEGAFEGLSNLRYLNLAMCN-LREI--PN-LTPLIKLD 210 (440)
T ss_dssp CEEECCSC-CCCEEC-TTTTTTCTTCCEEECCCCTT-CCE-ECTTTTTTCSSCCEEECTTSC-CSSC--CC-CTTCSSCC
T ss_pred ceeeCCCC-cccccC-HHHhhhCcccCEeCCCCCCC-cce-eCcchhhcccccCeecCCCCc-Cccc--cc-cCCCcccC
Confidence 88888874 333211 11234578888888887442 111 011123457888888888754 3321 11 23567888
Q ss_pred eeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCC
Q 017279 241 SLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALT 320 (374)
Q Consensus 241 ~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 320 (374)
.|++++| .++..... ....+++|+.|+++++. ++... ...+..+++|++|++++ +.++
T Consensus 211 ~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~------------------~~~~~~l~~L~~L~L~~-N~l~ 268 (440)
T 3zyj_A 211 ELDLSGN-HLSAIRPG-SFQGLMHLQKLWMIQSQ-IQVIE------------------RNAFDNLQSLVEINLAH-NNLT 268 (440)
T ss_dssp EEECTTS-CCCEECTT-TTTTCTTCCEEECTTCC-CCEEC------------------TTSSTTCTTCCEEECTT-SCCC
T ss_pred EEECCCC-ccCccChh-hhccCccCCEEECCCCc-eeEEC------------------hhhhcCCCCCCEEECCC-CCCC
Confidence 8888885 45432112 22357888888888774 43211 11234568999999998 4565
Q ss_pred HHHHHHHHhhCCCccCCCCCceEEecCCc
Q 017279 321 PPAVQALCDTFPALHTCSGRHSLVMSGCL 349 (374)
Q Consensus 321 ~~~l~~l~~~~~~l~~~~~L~~L~ls~C~ 349 (374)
.... ..+..+++|+.|++++++
T Consensus 269 ~~~~-------~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 269 LLPH-------DLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CCCT-------TTTSSCTTCCEEECCSSC
T ss_pred ccCh-------hHhccccCCCEEEcCCCC
Confidence 2111 123567899999999886
No 31
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.12 E-value=3.1e-13 Score=126.32 Aligned_cols=226 Identities=18% Similarity=0.126 Sum_probs=126.6
Q ss_pred cCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCC
Q 017279 80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPN 159 (374)
Q Consensus 80 ~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 159 (374)
.++.|+++++.... .....+..+++|+.|+++ .+.+.......+ ..+++|++|+++++ .++... ......+++
T Consensus 76 ~l~~L~L~~n~i~~--~~~~~~~~l~~L~~L~Ls--~n~i~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~ 148 (452)
T 3zyi_A 76 NTRYLNLMENNIQM--IQADTFRHLHHLEVLQLG--RNSIRQIEVGAF-NGLASLNTLELFDN-WLTVIP-SGAFEYLSK 148 (452)
T ss_dssp TCSEEECCSSCCCE--ECTTTTTTCTTCCEEECC--SSCCCEECTTTT-TTCTTCCEEECCSS-CCSBCC-TTTSSSCTT
T ss_pred CccEEECcCCcCce--ECHHHcCCCCCCCEEECC--CCccCCcChhhc-cCcccCCEEECCCC-cCCccC-hhhhcccCC
Confidence 36777777654321 112334567788888887 444443222222 34678888888876 333211 111234678
Q ss_pred CcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCC
Q 017279 160 LTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDL 239 (374)
Q Consensus 160 L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 239 (374)
|++|+++++ .+.... ......+++|++|+++++.. +.... ...+..+++|+.|+++++. +++. .. ...+++|
T Consensus 149 L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~l~~~~~-l~~i~-~~~~~~l~~L~~L~L~~n~-l~~~--~~-~~~l~~L 220 (452)
T 3zyi_A 149 LRELWLRNN-PIESIP-SYAFNRVPSLMRLDLGELKK-LEYIS-EGAFEGLFNLKYLNLGMCN-IKDM--PN-LTPLVGL 220 (452)
T ss_dssp CCEEECCSC-CCCEEC-TTTTTTCTTCCEEECCCCTT-CCEEC-TTTTTTCTTCCEEECTTSC-CSSC--CC-CTTCTTC
T ss_pred CCEEECCCC-CcceeC-HhHHhcCCcccEEeCCCCCC-ccccC-hhhccCCCCCCEEECCCCc-cccc--cc-ccccccc
Confidence 888888774 333211 11234577888888876432 11110 1123457788888887754 3321 11 2356788
Q ss_pred CeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCC
Q 017279 240 RSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTAL 319 (374)
Q Consensus 240 ~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 319 (374)
+.|++++| .++..... ....+++|+.|+++++. ++.... ..+..+++|+.|+++++ .+
T Consensus 221 ~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~------------------~~~~~l~~L~~L~L~~N-~l 278 (452)
T 3zyi_A 221 EELEMSGN-HFPEIRPG-SFHGLSSLKKLWVMNSQ-VSLIER------------------NAFDGLASLVELNLAHN-NL 278 (452)
T ss_dssp CEEECTTS-CCSEECGG-GGTTCTTCCEEECTTSC-CCEECT------------------TTTTTCTTCCEEECCSS-CC
T ss_pred cEEECcCC-cCcccCcc-cccCccCCCEEEeCCCc-CceECH------------------HHhcCCCCCCEEECCCC-cC
Confidence 88888884 44322112 22347788888888774 432111 12345689999999984 56
Q ss_pred CHHHHHHHHhhCCCccCCCCCceEEecCCc
Q 017279 320 TPPAVQALCDTFPALHTCSGRHSLVMSGCL 349 (374)
Q Consensus 320 ~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~ 349 (374)
+.... ..+..+++|+.|++++++
T Consensus 279 ~~~~~-------~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 279 SSLPH-------DLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp SCCCT-------TSSTTCTTCCEEECCSSC
T ss_pred CccCh-------HHhccccCCCEEEccCCC
Confidence 52110 123568899999999886
No 32
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.12 E-value=1.6e-14 Score=128.38 Aligned_cols=234 Identities=17% Similarity=0.095 Sum_probs=132.0
Q ss_pred HHHhhh------ccCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCC
Q 017279 73 WRDAIC------LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLS 146 (374)
Q Consensus 73 w~~~~~------~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~ 146 (374)
|..+.| ..++.|+++++.......+...+..+++|+.|+++ .++.+.......+ ..+++|++|+++++ .++
T Consensus 38 w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~-~~n~l~~~~p~~l-~~l~~L~~L~Ls~n-~l~ 114 (313)
T 1ogq_A 38 WLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIG-GINNLVGPIPPAI-AKLTQLHYLYITHT-NVS 114 (313)
T ss_dssp STTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEE-EETTEESCCCGGG-GGCTTCSEEEEEEE-CCE
T ss_pred CcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCC-CCCcccccCChhH-hcCCCCCEEECcCC-eeC
Confidence 776655 35788888876543210122345678899999998 3133322222222 34789999999876 333
Q ss_pred HHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCC-CCCEEeccCCCCCC
Q 017279 147 DRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCN-QLQSLNLGWCEDVG 225 (374)
Q Consensus 147 ~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~-~L~~L~l~~~~~~~ 225 (374)
......+ ..+++|++|+++++ .+... ++.....+++|++|+++++. +.......+ ..++ +|+.|+++++. +.
T Consensus 115 ~~~p~~~-~~l~~L~~L~Ls~N-~l~~~-~p~~~~~l~~L~~L~L~~N~--l~~~~p~~l-~~l~~~L~~L~L~~N~-l~ 187 (313)
T 1ogq_A 115 GAIPDFL-SQIKTLVTLDFSYN-ALSGT-LPPSISSLPNLVGITFDGNR--ISGAIPDSY-GSFSKLFTSMTISRNR-LT 187 (313)
T ss_dssp EECCGGG-GGCTTCCEEECCSS-EEESC-CCGGGGGCTTCCEEECCSSC--CEEECCGGG-GCCCTTCCEEECCSSE-EE
T ss_pred CcCCHHH-hCCCCCCEEeCCCC-ccCCc-CChHHhcCCCCCeEECcCCc--ccCcCCHHH-hhhhhcCcEEECcCCe-ee
Confidence 2111222 34789999999874 32211 11223458899999998854 332211222 3455 88999998753 32
Q ss_pred HHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCC
Q 017279 226 DVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDE 305 (374)
Q Consensus 226 ~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 305 (374)
..... ....++ |+.|+++++ .++... ......+++|+.|+++++. ++.. ...+..+
T Consensus 188 ~~~~~-~~~~l~-L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~L~~N~-l~~~-------------------~~~~~~l 243 (313)
T 1ogq_A 188 GKIPP-TFANLN-LAFVDLSRN-MLEGDA-SVLFGSDKNTQKIHLAKNS-LAFD-------------------LGKVGLS 243 (313)
T ss_dssp EECCG-GGGGCC-CSEEECCSS-EEEECC-GGGCCTTSCCSEEECCSSE-ECCB-------------------GGGCCCC
T ss_pred ccCCh-HHhCCc-ccEEECcCC-cccCcC-CHHHhcCCCCCEEECCCCc-eeee-------------------cCccccc
Confidence 11111 122334 888888885 343211 1222347888888888875 3310 0012245
Q ss_pred CCCcEEecCCCCCCCHHHHHHHHhhCC-CccCCCCCceEEecCCc
Q 017279 306 EGLQSLNISQCTALTPPAVQALCDTFP-ALHTCSGRHSLVMSGCL 349 (374)
Q Consensus 306 ~~L~~L~l~~~~~l~~~~l~~l~~~~~-~l~~~~~L~~L~ls~C~ 349 (374)
++|++|+++++ .++. ..| .+..+++|+.|++++|.
T Consensus 244 ~~L~~L~Ls~N-~l~~--------~~p~~l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 244 KNLNGLDLRNN-RIYG--------TLPQGLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp TTCCEEECCSS-CCEE--------CCCGGGGGCTTCCEEECCSSE
T ss_pred CCCCEEECcCC-cccC--------cCChHHhcCcCCCEEECcCCc
Confidence 78888888873 4442 122 24567778888888774
No 33
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.11 E-value=2.4e-12 Score=128.26 Aligned_cols=37 Identities=27% Similarity=0.373 Sum_probs=23.1
Q ss_pred CCCCCcEEecCCCCCCCHHHHHHHHhhCC-Cc-cCCCCCceEEecCCc
Q 017279 304 DEEGLQSLNISQCTALTPPAVQALCDTFP-AL-HTCSGRHSLVMSGCL 349 (374)
Q Consensus 304 ~~~~L~~L~l~~~~~l~~~~l~~l~~~~~-~l-~~~~~L~~L~ls~C~ 349 (374)
.+++|++|+++++ .++. ..| .+ ..|++|+.|++++|.
T Consensus 267 ~l~~L~~L~L~~n-~l~~--------~ip~~~~~~~~~L~~L~Ls~n~ 305 (768)
T 3rgz_A 267 PLKSLQYLSLAEN-KFTG--------EIPDFLSGACDTLTGLDLSGNH 305 (768)
T ss_dssp CCTTCCEEECCSS-EEEE--------SCCCCSCTTCTTCSEEECCSSE
T ss_pred ccCCCCEEECcCC-ccCC--------ccCHHHHhhcCcCCEEECcCCc
Confidence 4577888888774 3321 122 22 235888999988885
No 34
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.10 E-value=3e-13 Score=131.27 Aligned_cols=14 Identities=7% Similarity=-0.085 Sum_probs=7.3
Q ss_pred cCCCCCceEEecCC
Q 017279 335 HTCSGRHSLVMSGC 348 (374)
Q Consensus 335 ~~~~~L~~L~ls~C 348 (374)
..+++|+.|++++|
T Consensus 497 ~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 497 TSLKMMNHVDLSHN 510 (606)
T ss_dssp TTCTTCCEEECCSS
T ss_pred ccccCCCEEECCCC
Confidence 34455555555555
No 35
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.08 E-value=1.2e-12 Score=130.28 Aligned_cols=177 Identities=21% Similarity=0.234 Sum_probs=78.4
Q ss_pred cCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHH--HHhcC
Q 017279 80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYA--LAHGC 157 (374)
Q Consensus 80 ~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~--l~~~~ 157 (374)
.+++|+++++.....-........+++|++|+++ .+.+.......+...+++|++|+++++ .++...... ....+
T Consensus 101 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls--~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~l 177 (768)
T 3rgz_A 101 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVS--SNTLDFPGKVSGGLKLNSLEVLDLSAN-SISGANVVGWVLSDGC 177 (768)
T ss_dssp TCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECC--SSEEECCSSCCSCCCCTTCSEEECCSS-CCEEETHHHHHHTTCC
T ss_pred CCCEEECCCCcCCCcCCChHHHhCCCCCCEEECc--CCccCCcCCHHHhccCCCCCEEECCCC-ccCCcCChhhhhhccC
Confidence 4667777665443211111134466677777776 222211111111123566667776665 232221111 12345
Q ss_pred CCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCC
Q 017279 158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCP 237 (374)
Q Consensus 158 ~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 237 (374)
++|++|+++++. +... .. ...+++|++|+++++.. ... ... ...+++|++|+++++. +++.. ......++
T Consensus 178 ~~L~~L~Ls~n~-l~~~--~~-~~~l~~L~~L~Ls~n~l--~~~-~~~-l~~l~~L~~L~Ls~n~-l~~~~-~~~l~~l~ 247 (768)
T 3rgz_A 178 GELKHLAISGNK-ISGD--VD-VSRCVNLEFLDVSSNNF--STG-IPF-LGDCSALQHLDISGNK-LSGDF-SRAISTCT 247 (768)
T ss_dssp TTCCEEECCSSE-EESC--CB-CTTCTTCCEEECCSSCC--CSC-CCB-CTTCCSCCEEECCSSC-CCSCH-HHHTTTCS
T ss_pred CCCCEEECCCCc-cccc--CC-cccCCcCCEEECcCCcC--CCC-Ccc-cccCCCCCEEECcCCc-CCCcc-cHHHhcCC
Confidence 666666666532 1110 00 03456666666665432 110 111 3345666666666543 33221 22233566
Q ss_pred CCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCC
Q 017279 238 DLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYC 273 (374)
Q Consensus 238 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~ 273 (374)
+|++|++++|. ++.. +... .+++|++|++++|
T Consensus 248 ~L~~L~Ls~n~-l~~~-~~~~--~l~~L~~L~L~~n 279 (768)
T 3rgz_A 248 ELKLLNISSNQ-FVGP-IPPL--PLKSLQYLSLAEN 279 (768)
T ss_dssp SCCEEECCSSC-CEES-CCCC--CCTTCCEEECCSS
T ss_pred CCCEEECCCCc-ccCc-cCcc--ccCCCCEEECcCC
Confidence 66666666643 2110 0000 3555666666555
No 36
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.08 E-value=7.3e-12 Score=112.01 Aligned_cols=108 Identities=16% Similarity=0.143 Sum_probs=44.0
Q ss_pred hcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHh
Q 017279 102 PKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCG 181 (374)
Q Consensus 102 ~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~ 181 (374)
..+++|+.|+++ .+.+.......+ ..+++|++|+++++ .++. +.. ...++|++|+++++ .+.... .....
T Consensus 73 ~~l~~L~~L~L~--~n~l~~~~~~~~-~~l~~L~~L~Ls~n-~l~~--l~~--~~~~~L~~L~l~~n-~l~~~~-~~~~~ 142 (330)
T 1xku_A 73 KNLKNLHTLILI--NNKISKISPGAF-APLVKLERLYLSKN-QLKE--LPE--KMPKTLQELRVHEN-EITKVR-KSVFN 142 (330)
T ss_dssp TTCTTCCEEECC--SSCCCCBCTTTT-TTCTTCCEEECCSS-CCSB--CCS--SCCTTCCEEECCSS-CCCBBC-HHHHT
T ss_pred ccCCCCCEEECC--CCcCCeeCHHHh-cCCCCCCEEECCCC-cCCc--cCh--hhcccccEEECCCC-cccccC-HhHhc
Confidence 345566666665 223322111111 23556666666554 2221 000 11245666666553 222111 11223
Q ss_pred cCCCCcEEEcCCCccCccHH-HHHHHHhcCCCCCEEeccCC
Q 017279 182 FCRKLKILNLCGCVKAATDY-ALQAIGRNCNQLQSLNLGWC 221 (374)
Q Consensus 182 ~~~~L~~L~L~~~~~~~~~~-~~~~l~~~~~~L~~L~l~~~ 221 (374)
.+++|++|+++++. +... ........+++|+.|+++++
T Consensus 143 ~l~~L~~L~l~~n~--l~~~~~~~~~~~~l~~L~~L~l~~n 181 (330)
T 1xku_A 143 GLNQMIVVELGTNP--LKSSGIENGAFQGMKKLSYIRIADT 181 (330)
T ss_dssp TCTTCCEEECCSSC--CCGGGBCTTGGGGCTTCCEEECCSS
T ss_pred CCccccEEECCCCc--CCccCcChhhccCCCCcCEEECCCC
Confidence 45566666665533 2111 11112234555666665543
No 37
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.08 E-value=5.7e-13 Score=116.64 Aligned_cols=204 Identities=19% Similarity=0.132 Sum_probs=119.6
Q ss_pred cCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCC
Q 017279 80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPN 159 (374)
Q Consensus 80 ~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 159 (374)
.+++|+++.+.... .....+..+++|+.|+++ .+.+.......+ ..+++|++|+++++..++...... ...+++
T Consensus 33 ~l~~L~l~~n~i~~--~~~~~~~~~~~L~~L~l~--~n~l~~~~~~~~-~~l~~L~~L~l~~n~~l~~~~~~~-~~~l~~ 106 (285)
T 1ozn_A 33 ASQRIFLHGNRISH--VPAASFRACRNLTILWLH--SNVLARIDAAAF-TGLALLEQLDLSDNAQLRSVDPAT-FHGLGR 106 (285)
T ss_dssp TCSEEECTTSCCCE--ECTTTTTTCTTCCEEECC--SSCCCEECTTTT-TTCTTCCEEECCSCTTCCCCCTTT-TTTCTT
T ss_pred CceEEEeeCCcCCc--cCHHHcccCCCCCEEECC--CCccceeCHhhc-CCccCCCEEeCCCCCCccccCHHH-hcCCcC
Confidence 36777777654332 112234577889999998 444443222222 347889999998864233321112 234788
Q ss_pred CcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCC
Q 017279 160 LTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDL 239 (374)
Q Consensus 160 L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 239 (374)
|++|+++++ .+.... ......+++|++|+++++. +.... ......+++|+.|+++++. ++... ......+++|
T Consensus 107 L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~--l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L 179 (285)
T 1ozn_A 107 LHTLHLDRC-GLQELG-PGLFRGLAALQYLYLQDNA--LQALP-DDTFRDLGNLTHLFLHGNR-ISSVP-ERAFRGLHSL 179 (285)
T ss_dssp CCEEECTTS-CCCCCC-TTTTTTCTTCCEEECCSSC--CCCCC-TTTTTTCTTCCEEECCSSC-CCEEC-TTTTTTCTTC
T ss_pred CCEEECCCC-cCCEEC-HhHhhCCcCCCEEECCCCc--ccccC-HhHhccCCCccEEECCCCc-ccccC-HHHhcCcccc
Confidence 999999874 333211 1223457889999998754 32111 1123457889999998753 43311 1123457889
Q ss_pred CeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCC
Q 017279 240 RSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCT 317 (374)
Q Consensus 240 ~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 317 (374)
+.|+++++ .++......+ ..+++|+.|+++++. ++......+. .+++|+.|++++++
T Consensus 180 ~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n~-l~~~~~~~~~------------------~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 180 DRLLLHQN-RVAHVHPHAF-RDLGRLMTLYLFANN-LSALPTEALA------------------PLRALQYLRLNDNP 236 (285)
T ss_dssp CEEECCSS-CCCEECTTTT-TTCTTCCEEECCSSC-CSCCCHHHHT------------------TCTTCCEEECCSSC
T ss_pred CEEECCCC-cccccCHhHc-cCcccccEeeCCCCc-CCcCCHHHcc------------------cCcccCEEeccCCC
Confidence 99999985 4543222222 347889999998875 5543223333 34889999998854
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.08 E-value=6.5e-12 Score=115.07 Aligned_cols=50 Identities=12% Similarity=0.052 Sum_probs=28.3
Q ss_pred CCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCcccccccceecCcccccc
Q 017279 305 EEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVHCVCAGQSHRTA 366 (374)
Q Consensus 305 ~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~~~~~~~~~~~~~~~ 366 (374)
+++|+.|+++++ .++. ++ +..+++|+.|++++++ ++.......++.++..
T Consensus 317 l~~L~~L~L~~N-~i~~---------~~-~~~~~~L~~L~l~~N~-~~~~~~~~~~~~~~~~ 366 (390)
T 3o6n_A 317 FDRLENLYLDHN-SIVT---------LK-LSTHHTLKNLTLSHND-WDCNSLRALFRNVARP 366 (390)
T ss_dssp HTTCSEEECCSS-CCCC---------CC-CCTTCCCSEEECCSSC-EEHHHHHHHTTTCCTT
T ss_pred cCcCCEEECCCC-ccce---------eC-chhhccCCEEEcCCCC-ccchhHHHHHHHHHhh
Confidence 466777777663 3432 11 3567777888888775 5544444444444443
No 39
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.07 E-value=5.1e-11 Score=105.52 Aligned_cols=204 Identities=18% Similarity=0.142 Sum_probs=104.0
Q ss_pred CCCCcEEEeeCCCCCCChHHHHHHH-HhCCCCCEEecCCCCCCCHH----HHHHHHhcCCCCcEEeecCCCCCCHHHHHH
Q 017279 104 LTKLQTLVLRQDKPQLEDNAVEAIA-NSCHDLQDLDLSKSFKLSDR----SLYALAHGCPNLTRLNISGCTSFSDHALAY 178 (374)
Q Consensus 104 ~~~L~~L~l~~~~~~~~~~~~~~l~-~~~~~L~~L~l~~~~~~~~~----~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~ 178 (374)
.++|+.|+++ .+.+.......+. ..+++|++|+++++. ++.. ....+. .+++|++|+++++ .+.... ..
T Consensus 90 ~~~L~~L~l~--~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~~~~~-~~~~L~~L~Ls~n-~l~~~~-~~ 163 (310)
T 4glp_A 90 YSRLKELTLE--DLKITGTMPPLPLEATGLALSSLRLRNVS-WATGRSWLAELQQW-LKPGLKVLSIAQA-HSPAFS-CE 163 (310)
T ss_dssp HSCCCEEEEE--SCCCBSCCCCCSSSCCCBCCSSCEEESCC-CSSTTSSHHHHHTT-BCSCCCEEEEECC-SSCCCC-TT
T ss_pred cCceeEEEee--CCEeccchhhhhhhccCCCCCEEEeeccc-ccchhhhhHHHHhh-hccCCCEEEeeCC-Ccchhh-HH
Confidence 3557777777 3333221111111 336677777777753 3221 111222 4677777777764 332111 11
Q ss_pred HHhcCCCCcEEEcCCCccCccH-HHHHH--HHhcCCCCCEEeccCCCCCCH--HHHHHHHhcCCCCCeeecCCCCCCCHH
Q 017279 179 LCGFCRKLKILNLCGCVKAATD-YALQA--IGRNCNQLQSLNLGWCEDVGD--VGVMNLAYGCPDLRSLDLCGCVCITDD 253 (374)
Q Consensus 179 l~~~~~~L~~L~L~~~~~~~~~-~~~~~--l~~~~~~L~~L~l~~~~~~~~--~~~~~l~~~~~~L~~L~l~~~~~l~~~ 253 (374)
....+++|++|+++++. +.. ..+.. ....+++|++|+++++. ++. .....+...+++|++|++++| .++..
T Consensus 164 ~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N-~l~~~ 239 (310)
T 4glp_A 164 QVRAFPALTSLDLSDNP--GLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHN-SLRAT 239 (310)
T ss_dssp SCCCCTTCCEEECCSCT--TCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTS-CCCCC
T ss_pred HhccCCCCCEEECCCCC--CccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCC-CCCcc
Confidence 22346777777777744 222 22211 12356777777777654 432 222223455677777777774 34322
Q ss_pred HHHHHHh--cCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhC
Q 017279 254 SVIALAN--GCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTF 331 (374)
Q Consensus 254 ~l~~l~~--~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~ 331 (374)
....+.. ..++|++|+++++. ++. +.. .+ +++|++|++++ +.++. +
T Consensus 240 ~p~~~~~~~~~~~L~~L~Ls~N~-l~~-----lp~--------------~~--~~~L~~L~Ls~-N~l~~---------~ 287 (310)
T 4glp_A 240 VNPSAPRCMWSSALNSLNLSFAG-LEQ-----VPK--------------GL--PAKLRVLDLSS-NRLNR---------A 287 (310)
T ss_dssp CCSCCSSCCCCTTCCCEECCSSC-CCS-----CCS--------------CC--CSCCSCEECCS-CCCCS---------C
T ss_pred chhhHHhccCcCcCCEEECCCCC-CCc-----hhh--------------hh--cCCCCEEECCC-CcCCC---------C
Confidence 1111111 12577777777764 331 000 01 26788888877 45552 2
Q ss_pred CCccCCCCCceEEecCCc
Q 017279 332 PALHTCSGRHSLVMSGCL 349 (374)
Q Consensus 332 ~~l~~~~~L~~L~ls~C~ 349 (374)
|....+++|+.|++++++
T Consensus 288 ~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 288 PQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCTTSCCCCSCEECSSTT
T ss_pred chhhhCCCccEEECcCCC
Confidence 334567788888888774
No 40
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.06 E-value=1.2e-12 Score=126.98 Aligned_cols=108 Identities=20% Similarity=0.137 Sum_probs=48.2
Q ss_pred ccCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCC
Q 017279 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP 158 (374)
Q Consensus 79 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 158 (374)
..++.|+++++.... ++.....+++|+.|+++ .+.+.......+ ..+++|++|+++++..... ........++
T Consensus 278 ~~L~~L~l~~n~l~~---lp~~l~~l~~L~~L~l~--~n~l~~~~~~~~-~~l~~L~~L~l~~n~~~~~-~~~~~~~~l~ 350 (606)
T 3t6q_A 278 SGLQELDLTATHLSE---LPSGLVGLSTLKKLVLS--ANKFENLCQISA-SNFPSLTHLSIKGNTKRLE-LGTGCLENLE 350 (606)
T ss_dssp TTCSEEECTTSCCSC---CCSSCCSCTTCCEEECT--TCCCSBGGGGCG-GGCTTCSEEECCSCSSCCB-CCSSTTTTCT
T ss_pred cCCCEEeccCCccCC---CChhhcccccCCEEECc--cCCcCcCchhhh-hccCcCCEEECCCCCcccc-cchhhhhccC
Confidence 346777776654321 11223456677777776 334433221122 2356667776666521111 0001112356
Q ss_pred CCcEEeecCCCCCCHHH-HHHHHhcCCCCcEEEcCCC
Q 017279 159 NLTRLNISGCTSFSDHA-LAYLCGFCRKLKILNLCGC 194 (374)
Q Consensus 159 ~L~~L~L~~~~~~~~~~-~~~l~~~~~~L~~L~L~~~ 194 (374)
+|++|+++++ .+.... .......+++|++|+++++
T Consensus 351 ~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n 386 (606)
T 3t6q_A 351 NLRELDLSHD-DIETSDCCNLQLRNLSHLQSLNLSYN 386 (606)
T ss_dssp TCCEEECCSS-CCCEEEESTTTTTTCTTCCEEECCSC
T ss_pred cCCEEECCCC-ccccccCcchhcccCCCCCEEECCCC
Confidence 6666666653 222110 0111223555666665553
No 41
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.05 E-value=3.7e-13 Score=119.12 Aligned_cols=210 Identities=15% Similarity=0.110 Sum_probs=131.9
Q ss_pred CCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHH--HHHHHhcCCCCcEEeecCCCCCCHHHHHHHHh
Q 017279 104 LTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRS--LYALAHGCPNLTRLNISGCTSFSDHALAYLCG 181 (374)
Q Consensus 104 ~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~--~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~ 181 (374)
.++++.|+++ .+.+.... ..+...+++|++|+++++ .++... ...+. .+++|++|+++++ .+.. ++....
T Consensus 27 ~~~l~~L~L~--~n~l~~i~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~-~~~~L~~L~Ls~n-~i~~--l~~~~~ 98 (306)
T 2z66_A 27 PSSATRLELE--SNKLQSLP-HGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDF-GTTSLKYLDLSFN-GVIT--MSSNFL 98 (306)
T ss_dssp CTTCCEEECC--SSCCCCCC-TTTTTTCTTCSEEECCSS-CCCEEEEEEHHHH-SCSCCCEEECCSC-SEEE--EEEEEE
T ss_pred CCCCCEEECC--CCccCccC-HhHhhccccCCEEECCCC-ccCcccCcccccc-cccccCEEECCCC-cccc--ChhhcC
Confidence 3689999999 44444211 122245889999999987 443211 11222 3799999999985 3331 111234
Q ss_pred cCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhc
Q 017279 182 FCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANG 261 (374)
Q Consensus 182 ~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~ 261 (374)
.+++|++|+++++. +...........+++|++|+++++. +... .......+++|++|+++++ .++...+......
T Consensus 99 ~l~~L~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~ 173 (306)
T 2z66_A 99 GLEQLEHLDFQHSN--LKQMSEFSVFLSLRNLIYLDISHTH-TRVA-FNGIFNGLSSLEVLKMAGN-SFQENFLPDIFTE 173 (306)
T ss_dssp TCTTCCEEECTTSE--EESSTTTTTTTTCTTCCEEECTTSC-CEEC-STTTTTTCTTCCEEECTTC-EEGGGEECSCCTT
T ss_pred CCCCCCEEECCCCc--ccccccchhhhhccCCCEEECCCCc-CCcc-chhhcccCcCCCEEECCCC-ccccccchhHHhh
Confidence 58999999999854 3322211234568999999998864 3221 1222346799999999995 4433222223345
Q ss_pred CCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCc
Q 017279 262 CPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRH 341 (374)
Q Consensus 262 ~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~ 341 (374)
+++|+.|+++++. ++.... ..+..+++|++|+++++ .++..... .+..+++|+
T Consensus 174 l~~L~~L~Ls~n~-l~~~~~------------------~~~~~l~~L~~L~L~~N-~l~~~~~~-------~~~~l~~L~ 226 (306)
T 2z66_A 174 LRNLTFLDLSQCQ-LEQLSP------------------TAFNSLSSLQVLNMSHN-NFFSLDTF-------PYKCLNSLQ 226 (306)
T ss_dssp CTTCCEEECTTSC-CCEECT------------------TTTTTCTTCCEEECTTS-CCSBCCSG-------GGTTCTTCC
T ss_pred CcCCCEEECCCCC-cCCcCH------------------HHhcCCCCCCEEECCCC-ccCccChh-------hccCcccCC
Confidence 8999999999985 543111 12335689999999994 55531110 246789999
Q ss_pred eEEecCCcccccc
Q 017279 342 SLVMSGCLNLTSV 354 (374)
Q Consensus 342 ~L~ls~C~~l~~~ 354 (374)
.|++++|. ++..
T Consensus 227 ~L~L~~N~-l~~~ 238 (306)
T 2z66_A 227 VLDYSLNH-IMTS 238 (306)
T ss_dssp EEECTTSC-CCBC
T ss_pred EeECCCCC-Cccc
Confidence 99999995 5543
No 42
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.05 E-value=1.3e-12 Score=122.90 Aligned_cols=40 Identities=20% Similarity=0.197 Sum_probs=24.6
Q ss_pred ccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCc
Q 017279 302 RYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCL 349 (374)
Q Consensus 302 ~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~ 349 (374)
+..+++|+.|+++++ .++.... ..+..+++|+.|++++++
T Consensus 292 ~~~l~~L~~L~L~~N-~l~~~~~-------~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 292 FRGLNYLRVLNVSGN-QLTTLEE-------SVFHSVGNLETLILDSNP 331 (477)
T ss_dssp BTTCTTCCEEECCSS-CCSCCCG-------GGBSCGGGCCEEECCSSC
T ss_pred hcCcccCCEEECCCC-cCceeCH-------hHcCCCcccCEEEccCCC
Confidence 556677777777773 4542110 013567788888888775
No 43
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.05 E-value=9.1e-09 Score=83.58 Aligned_cols=133 Identities=17% Similarity=0.112 Sum_probs=80.6
Q ss_pred HHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHh---cCCCCCeeecCCCCCCCHHHHHHHHh---cCCCCceEecCCCC
Q 017279 201 YALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAY---GCPDLRSLDLCGCVCITDDSVIALAN---GCPHLRSLGLYYCR 274 (374)
Q Consensus 201 ~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~l~~l~~---~~~~L~~L~l~~~~ 274 (374)
+.+..+...+++|++|+++++..+++.+...+.. ..++|++|++++| .+++++...+.+ ..+.|++|++++|.
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 3444455566677777776652466665554433 3566777777773 566666544443 24667777777774
Q ss_pred CCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEec--CCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCcccc
Q 017279 275 NITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNI--SQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLT 352 (374)
Q Consensus 275 ~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l--~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~ 352 (374)
+++.++..++... ...++|++|++ ++ +.+++.+...++..+ ..+++|+.|++++|. +.
T Consensus 105 -i~~~g~~~l~~~L--------------~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L---~~n~~L~~L~L~~n~-i~ 164 (185)
T 1io0_A 105 -ISGSGILALVEAL--------------QSNTSLIELRIDNQS-QPLGNNVEMEIANML---EKNTTLLKFGYHFTQ-QG 164 (185)
T ss_dssp -CCHHHHHHHHHGG--------------GGCSSCCEEECCCCS-SCCCHHHHHHHHHHH---HHCSSCCEEECCCSS-HH
T ss_pred -CCHHHHHHHHHHH--------------HhCCCceEEEecCCC-CCCCHHHHHHHHHHH---HhCCCcCEEeccCCC-CC
Confidence 7777777666542 12356777777 44 567777766665432 445677777777774 54
Q ss_pred cc
Q 017279 353 SV 354 (374)
Q Consensus 353 ~~ 354 (374)
..
T Consensus 165 ~~ 166 (185)
T 1io0_A 165 PR 166 (185)
T ss_dssp HH
T ss_pred hH
Confidence 44
No 44
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.04 E-value=9.1e-12 Score=110.47 Aligned_cols=207 Identities=19% Similarity=0.112 Sum_probs=131.6
Q ss_pred hccCceeecccccccchHHHHHH-hhcCCCCcEEEeeCCCCCCChH--HHHHHHHh-CCCCCEEecCCCCCCCHHHHHHH
Q 017279 78 CLGLTHLSLSWCKNNMNNLVLSL-APKLTKLQTLVLRQDKPQLEDN--AVEAIANS-CHDLQDLDLSKSFKLSDRSLYAL 153 (374)
Q Consensus 78 ~~~l~~L~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~--~~~~l~~~-~~~L~~L~l~~~~~~~~~~~~~l 153 (374)
...+++|+++++...... ...+ ...+++|+.|+++ .+.++.. .+..+... .++|++|+++++ .++......+
T Consensus 94 l~~L~~L~L~~n~l~~~~-~~~~~~~~l~~L~~L~Ls--~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~ 169 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTA-PPPLLEATGPDLNILNLR--NVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQV 169 (312)
T ss_dssp TSCCCEEEEEEEBCBSCC-CCCSSSCCSCCCSEEEEE--SCBCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTC
T ss_pred cCCccEEEccCCcccchh-HHHHHHhcCCCccEEEcc--CCCCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHh
Confidence 456999999987654211 1111 2678999999999 4445443 33333221 389999999997 3333221222
Q ss_pred HhcCCCCcEEeecCCCCCCH-HHHHHHH--hcCCCCcEEEcCCCccCccH--HHHHHHHhcCCCCCEEeccCCCCCCHHH
Q 017279 154 AHGCPNLTRLNISGCTSFSD-HALAYLC--GFCRKLKILNLCGCVKAATD--YALQAIGRNCNQLQSLNLGWCEDVGDVG 228 (374)
Q Consensus 154 ~~~~~~L~~L~L~~~~~~~~-~~~~~l~--~~~~~L~~L~L~~~~~~~~~--~~~~~l~~~~~~L~~L~l~~~~~~~~~~ 228 (374)
..+++|++|+++++ .+.. .++.... ..+++|++|+++++. +.. .....+...+++|+.|+++++. +++..
T Consensus 170 -~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~ 244 (312)
T 1wwl_A 170 -RVFPALSTLDLSDN-PELGERGLISALCPLKFPTLQVLALRNAG--METPSGVCSALAAARVQLQGLDLSHNS-LRDAA 244 (312)
T ss_dssp -CCCSSCCEEECCSC-TTCHHHHHHHHSCTTSCTTCCEEECTTSC--CCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSC
T ss_pred -ccCCCCCEEECCCC-CcCcchHHHHHHHhccCCCCCEEECCCCc--CcchHHHHHHHHhcCCCCCEEECCCCc-CCccc
Confidence 34799999999985 4443 3333332 678999999999965 442 3344566678999999999864 44321
Q ss_pred HHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCC
Q 017279 229 VMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGL 308 (374)
Q Consensus 229 ~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L 308 (374)
.......+++|+.|++++| .++ .+..- ..++|+.|+++++. ++.. .. +..+++|
T Consensus 245 ~~~~~~~l~~L~~L~Ls~N-~l~--~ip~~--~~~~L~~L~Ls~N~-l~~~--p~------------------~~~l~~L 298 (312)
T 1wwl_A 245 GAPSCDWPSQLNSLNLSFT-GLK--QVPKG--LPAKLSVLDLSYNR-LDRN--PS------------------PDELPQV 298 (312)
T ss_dssp CCSCCCCCTTCCEEECTTS-CCS--SCCSS--CCSEEEEEECCSSC-CCSC--CC------------------TTTSCEE
T ss_pred chhhhhhcCCCCEEECCCC-ccC--hhhhh--ccCCceEEECCCCC-CCCC--hh------------------HhhCCCC
Confidence 1112234689999999995 455 11111 12689999999985 5532 11 2246899
Q ss_pred cEEecCCCCCCC
Q 017279 309 QSLNISQCTALT 320 (374)
Q Consensus 309 ~~L~l~~~~~l~ 320 (374)
++|++++ +.++
T Consensus 299 ~~L~L~~-N~l~ 309 (312)
T 1wwl_A 299 GNLSLKG-NPFL 309 (312)
T ss_dssp EEEECTT-CTTT
T ss_pred CEEeccC-CCCC
Confidence 9999998 4554
No 45
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.04 E-value=7.5e-12 Score=121.09 Aligned_cols=39 Identities=18% Similarity=0.100 Sum_probs=20.6
Q ss_pred hcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCC
Q 017279 234 YGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCR 274 (374)
Q Consensus 234 ~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~ 274 (374)
..+++|+.|++++| .++......+ ..+++|+.|+++++.
T Consensus 251 ~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~Ls~N~ 289 (597)
T 3oja_B 251 LNYPGLVEVDLSYN-ELEKIMYHPF-VKMQRLERLYISNNR 289 (597)
T ss_dssp GGCTTCSEEECCSS-CCCEEESGGG-TTCSSCCEEECTTSC
T ss_pred ccCCCCCEEECCCC-ccCCCCHHHh-cCccCCCEEECCCCC
Confidence 35667777777764 3432211122 236666666666653
No 46
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.04 E-value=1.8e-10 Score=107.55 Aligned_cols=161 Identities=18% Similarity=0.068 Sum_probs=94.2
Q ss_pred ccCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCC
Q 017279 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP 158 (374)
Q Consensus 79 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 158 (374)
..++.|+++.+..... + .+..+++|++|+++ .+.++... ...+++|++|+++++. ++... ...++
T Consensus 42 ~~L~~L~Ls~n~l~~~---~-~l~~l~~L~~L~Ls--~n~l~~~~----~~~l~~L~~L~Ls~N~-l~~~~----~~~l~ 106 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM---T-GIEKLTGLTKLICT--SNNITTLD----LSQNTNLTYLACDSNK-LTNLD----VTPLT 106 (457)
T ss_dssp TTCCEEECCSSCCCCC---T-TGGGCTTCSEEECC--SSCCSCCC----CTTCTTCSEEECCSSC-CSCCC----CTTCT
T ss_pred CCCCEEEccCCCcccC---h-hhcccCCCCEEEcc--CCcCCeEc----cccCCCCCEEECcCCC-Cceee----cCCCC
Confidence 4478888877654322 1 24567888888888 44444421 2346788888888763 33321 23477
Q ss_pred CCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCC
Q 017279 159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPD 238 (374)
Q Consensus 159 ~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 238 (374)
+|++|+++++ .+... + ...+++|++|+++++. +.... ...+++|+.|+++++..++... ...+++
T Consensus 107 ~L~~L~L~~N-~l~~l--~--~~~l~~L~~L~l~~N~--l~~l~----l~~l~~L~~L~l~~n~~~~~~~----~~~l~~ 171 (457)
T 3bz5_A 107 KLTYLNCDTN-KLTKL--D--VSQNPLLTYLNCARNT--LTEID----VSHNTQLTELDCHLNKKITKLD----VTPQTQ 171 (457)
T ss_dssp TCCEEECCSS-CCSCC--C--CTTCTTCCEEECTTSC--CSCCC----CTTCTTCCEEECTTCSCCCCCC----CTTCTT
T ss_pred cCCEEECCCC-cCCee--c--CCCCCcCCEEECCCCc--cceec----cccCCcCCEEECCCCCcccccc----cccCCc
Confidence 8888888774 34332 1 3457788888887754 33211 3356777777777654333321 234677
Q ss_pred CCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCC
Q 017279 239 LRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCR 274 (374)
Q Consensus 239 L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~ 274 (374)
|+.|+++++ .++.. . ...+++|+.|+++++.
T Consensus 172 L~~L~ls~n-~l~~l--~--l~~l~~L~~L~l~~N~ 202 (457)
T 3bz5_A 172 LTTLDCSFN-KITEL--D--VSQNKLLNRLNCDTNN 202 (457)
T ss_dssp CCEEECCSS-CCCCC--C--CTTCTTCCEEECCSSC
T ss_pred CCEEECCCC-cccee--c--cccCCCCCEEECcCCc
Confidence 777777774 34331 1 2246677777777664
No 47
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.02 E-value=7e-12 Score=111.45 Aligned_cols=56 Identities=25% Similarity=0.221 Sum_probs=26.9
Q ss_pred cCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCC
Q 017279 80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKS 142 (374)
Q Consensus 80 ~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 142 (374)
.+++|+++++.... .....+..+++|+.|+++ .+.+..... ...+++|++|+++++
T Consensus 35 ~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls--~n~l~~~~~---~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 35 NVKELDLSGNPLSQ--ISAADLAPFTKLELLNLS--SNVLYETLD---LESLSTLRTLDLNNN 90 (317)
T ss_dssp GCSEEECTTSCCCC--CCHHHHTTCTTCCEEECT--TSCCEEEEE---ETTCTTCCEEECCSS
T ss_pred CCCEEECcCCccCc--CCHHHhhCCCcCCEEECC--CCcCCcchh---hhhcCCCCEEECcCC
Confidence 36666666543321 122233456666666666 333322110 223556666666664
No 48
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.02 E-value=6.9e-11 Score=113.17 Aligned_cols=84 Identities=20% Similarity=0.138 Sum_probs=44.0
Q ss_pred ccCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCC
Q 017279 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP 158 (374)
Q Consensus 79 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 158 (374)
..+++|+++++.... .....+..+++|++|+++ .+.+.......+ ..+++|++|+++++. ++..........++
T Consensus 50 ~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~Ls--~n~l~~~~~~~~-~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~ 123 (549)
T 2z81_A 50 ANLQVLILKSSRINT--IEGDAFYSLGSLEHLDLS--DNHLSSLSSSWF-GPLSSLKYLNLMGNP-YQTLGVTSLFPNLT 123 (549)
T ss_dssp TTCCEEECTTSCCCE--ECTTTTTTCTTCCEEECT--TSCCCSCCHHHH-TTCTTCCEEECTTCC-CSSSCSSCSCTTCT
T ss_pred CcccEEECCCCCcCc--cChhhccccccCCEEECC--CCccCccCHHHh-ccCCCCcEEECCCCc-ccccchhhhhhccC
Confidence 347777777654332 112234466777788777 444443332223 346777777777762 22111111123356
Q ss_pred CCcEEeecCC
Q 017279 159 NLTRLNISGC 168 (374)
Q Consensus 159 ~L~~L~L~~~ 168 (374)
+|++|+++++
T Consensus 124 ~L~~L~L~~n 133 (549)
T 2z81_A 124 NLQTLRIGNV 133 (549)
T ss_dssp TCCEEEEEES
T ss_pred CccEEECCCC
Confidence 6777777654
No 49
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.01 E-value=2.1e-12 Score=121.54 Aligned_cols=232 Identities=18% Similarity=0.142 Sum_probs=141.3
Q ss_pred ccCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCC
Q 017279 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP 158 (374)
Q Consensus 79 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 158 (374)
..+++|+++.+... ......+..+++|+.|+++ .+.+.......+ ..+++|++|+++++ .+.......+ ..++
T Consensus 80 ~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~Ls--~n~i~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~ 152 (477)
T 2id5_A 80 FNLRTLGLRSNRLK--LIPLGVFTGLSNLTKLDIS--ENKIVILLDYMF-QDLYNLKSLEVGDN-DLVYISHRAF-SGLN 152 (477)
T ss_dssp TTCCEEECCSSCCC--SCCTTSSTTCTTCCEEECT--TSCCCEECTTTT-TTCTTCCEEEECCT-TCCEECTTSS-TTCT
T ss_pred ccCCEEECCCCcCC--ccCcccccCCCCCCEEECC--CCccccCChhHc-cccccCCEEECCCC-ccceeChhhc-cCCC
Confidence 45899999876543 1222334578999999998 444443221122 45789999999986 3332111112 3478
Q ss_pred CCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCC
Q 017279 159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPD 238 (374)
Q Consensus 159 ~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 238 (374)
+|++|+++++ .++... ......+++|+.|+++++. +.... ...+..+++|+.|+++++....... .. .....+
T Consensus 153 ~L~~L~l~~n-~l~~~~-~~~l~~l~~L~~L~l~~n~--i~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~-~~-~~~~~~ 225 (477)
T 2id5_A 153 SLEQLTLEKC-NLTSIP-TEALSHLHGLIVLRLRHLN--INAIR-DYSFKRLYRLKVLEISHWPYLDTMT-PN-CLYGLN 225 (477)
T ss_dssp TCCEEEEESC-CCSSCC-HHHHTTCTTCCEEEEESCC--CCEEC-TTCSCSCTTCCEEEEECCTTCCEEC-TT-TTTTCC
T ss_pred CCCEEECCCC-cCcccC-hhHhcccCCCcEEeCCCCc--CcEeC-hhhcccCcccceeeCCCCccccccC-cc-cccCcc
Confidence 9999999885 443322 1234568999999998854 22211 1123467899999998765332211 11 112358
Q ss_pred CCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCC
Q 017279 239 LRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTA 318 (374)
Q Consensus 239 L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 318 (374)
|+.|++++| .++.... .....+++|+.|+++++. ++.... ..+..+++|++|+++++ .
T Consensus 226 L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~------------------~~~~~l~~L~~L~L~~n-~ 283 (477)
T 2id5_A 226 LTSLSITHC-NLTAVPY-LAVRHLVYLRFLNLSYNP-ISTIEG------------------SMLHELLRLQEIQLVGG-Q 283 (477)
T ss_dssp CSEEEEESS-CCCSCCH-HHHTTCTTCCEEECCSSC-CCEECT------------------TSCTTCTTCCEEECCSS-C
T ss_pred ccEEECcCC-cccccCH-HHhcCccccCeeECCCCc-CCccCh------------------hhccccccCCEEECCCC-c
Confidence 999999985 4543222 233458999999999875 442111 11335689999999884 5
Q ss_pred CCHHHHHHHHhhCCCccCCCCCceEEecCCcccccc
Q 017279 319 LTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSV 354 (374)
Q Consensus 319 l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~~~ 354 (374)
++... -..+..+++|+.|++++| .++..
T Consensus 284 l~~~~-------~~~~~~l~~L~~L~L~~N-~l~~~ 311 (477)
T 2id5_A 284 LAVVE-------PYAFRGLNYLRVLNVSGN-QLTTL 311 (477)
T ss_dssp CSEEC-------TTTBTTCTTCCEEECCSS-CCSCC
T ss_pred cceEC-------HHHhcCcccCCEEECCCC-cCcee
Confidence 55311 113467889999999988 35543
No 50
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.01 E-value=8.3e-13 Score=128.12 Aligned_cols=39 Identities=10% Similarity=-0.026 Sum_probs=20.7
Q ss_pred ccCCCCCcEEecCCCCCCCHHHHHHHHhhCC-CccCCC-CCceEEecCCcc
Q 017279 302 RYDEEGLQSLNISQCTALTPPAVQALCDTFP-ALHTCS-GRHSLVMSGCLN 350 (374)
Q Consensus 302 ~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~-~l~~~~-~L~~L~ls~C~~ 350 (374)
+..+++|++|+++++ .++. +| .+..++ +|+.|++++++-
T Consensus 517 ~~~l~~L~~L~l~~N-~l~~---------~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 517 YNQLYSLSTLDCSFN-RIET---------SKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp TTTCTTCCEEECTTS-CCCC---------EESCGGGSCTTCCEEECCSCCC
T ss_pred ccCCCcCCEEECCCC-cCcc---------cCHhHhhhcccCcEEEccCCCc
Confidence 445566666666663 3441 11 123444 477777776653
No 51
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.00 E-value=9.7e-12 Score=113.89 Aligned_cols=108 Identities=17% Similarity=0.087 Sum_probs=50.5
Q ss_pred ccCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCC
Q 017279 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP 158 (374)
Q Consensus 79 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 158 (374)
..++.|+++++.... .....+..+++|+.|+++ .+.+.......+ ..+++|++|+++++ .++.- ...+...++
T Consensus 69 ~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~L~--~n~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~l-~~~~~~~l~ 141 (390)
T 3o6n_A 69 RQVELLNLNDLQIEE--IDTYAFAYAHTIQKLYMG--FNAIRYLPPHVF-QNVPLLTVLVLERN-DLSSL-PRGIFHNTP 141 (390)
T ss_dssp CCCSEEECTTSCCCE--ECTTTTTTCTTCCEEECC--SSCCCCCCTTTT-TTCTTCCEEECCSS-CCCCC-CTTTTTTCT
T ss_pred ccCcEEECCCCcccc--cChhhccCCCCcCEEECC--CCCCCcCCHHHh-cCCCCCCEEECCCC-ccCcC-CHHHhcCCC
Confidence 346666666543321 111223456667777776 333332111111 23566777777665 22211 111123356
Q ss_pred CCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCc
Q 017279 159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV 195 (374)
Q Consensus 159 ~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 195 (374)
+|++|+++++ .+.... +.....+++|++|+++++.
T Consensus 142 ~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~ 176 (390)
T 3o6n_A 142 KLTTLSMSNN-NLERIE-DDTFQATTSLQNLQLSSNR 176 (390)
T ss_dssp TCCEEECCSS-CCCBCC-TTTTSSCTTCCEEECCSSC
T ss_pred CCcEEECCCC-ccCccC-hhhccCCCCCCEEECCCCc
Confidence 7777777663 232111 1112346677777776644
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.00 E-value=6.8e-12 Score=113.31 Aligned_cols=241 Identities=19% Similarity=0.118 Sum_probs=147.7
Q ss_pred ccCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCC
Q 017279 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP 158 (374)
Q Consensus 79 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 158 (374)
..+++|+++++.... .....+..+++|+.|+++ .+.+.......+ ..+++|++|+++++ .++.... .....++
T Consensus 52 ~~L~~L~l~~n~i~~--~~~~~~~~l~~L~~L~L~--~n~l~~~~~~~~-~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~ 124 (353)
T 2z80_A 52 EAVKSLDLSNNRITY--ISNSDLQRCVNLQALVLT--SNGINTIEEDSF-SSLGSLEHLDLSYN-YLSNLSS-SWFKPLS 124 (353)
T ss_dssp TTCCEEECTTSCCCE--ECTTTTTTCTTCCEEECT--TSCCCEECTTTT-TTCTTCCEEECCSS-CCSSCCH-HHHTTCT
T ss_pred ccCcEEECCCCcCcc--cCHHHhccCCCCCEEECC--CCccCccCHhhc-CCCCCCCEEECCCC-cCCcCCH-hHhCCCc
Confidence 358899998765432 122234578999999998 445544222222 34789999999986 3433222 2234588
Q ss_pred CCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCC
Q 017279 159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPD 238 (374)
Q Consensus 159 ~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 238 (374)
+|++|+++++ .+...........+++|++|+++++.. +... .......+++|++|+++++. +.... ......+++
T Consensus 125 ~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~-~~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~l~~l~~ 199 (353)
T 2z80_A 125 SLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDT-FTKI-QRKDFAGLTFLEELEIDASD-LQSYE-PKSLKSIQN 199 (353)
T ss_dssp TCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSS-CCEE-CTTTTTTCCEEEEEEEEETT-CCEEC-TTTTTTCSE
T ss_pred cCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCcc-cccc-CHHHccCCCCCCEEECCCCC-cCccC-HHHHhcccc
Confidence 9999999874 443211101234688999999987531 1111 11223457889999998754 33321 122345788
Q ss_pred CCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCC
Q 017279 239 LRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTA 318 (374)
Q Consensus 239 L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 318 (374)
|++|+++++ .++... ..+...+++|+.|+++++. ++......+... ...+.++.+++.+ ..
T Consensus 200 L~~L~l~~n-~l~~~~-~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~---------------~~~~~l~~l~L~~-~~ 260 (353)
T 2z80_A 200 VSHLILHMK-QHILLL-EIFVDVTSSVECLELRDTD-LDTFHFSELSTG---------------ETNSLIKKFTFRN-VK 260 (353)
T ss_dssp EEEEEEECS-CSTTHH-HHHHHHTTTEEEEEEESCB-CTTCCCC---------------------CCCCCCEEEEES-CB
T ss_pred CCeecCCCC-ccccch-hhhhhhcccccEEECCCCc-cccccccccccc---------------cccchhhcccccc-cc
Confidence 999999985 454322 3334458999999999875 443221111111 1247889999998 57
Q ss_pred CCHHHHHHHHhhCCCccCCCCCceEEecCCcccccc
Q 017279 319 LTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSV 354 (374)
Q Consensus 319 l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~~~ 354 (374)
+++..+..+... +..+++|+.|++++|. ++..
T Consensus 261 l~~~~l~~l~~~---l~~l~~L~~L~Ls~N~-l~~i 292 (353)
T 2z80_A 261 ITDESLFQVMKL---LNQISGLLELEFSRNQ-LKSV 292 (353)
T ss_dssp CCHHHHHHHHHH---HHTCTTCCEEECCSSC-CCCC
T ss_pred ccCcchhhhHHH---HhcccCCCEEECCCCC-CCcc
Confidence 888777665432 3678999999999994 6643
No 53
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.00 E-value=1.1e-12 Score=126.29 Aligned_cols=40 Identities=13% Similarity=0.052 Sum_probs=26.3
Q ss_pred ccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCc
Q 017279 302 RYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCL 349 (374)
Q Consensus 302 ~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~ 349 (374)
+..+++|++|++++| .++.... ..+..+++|+.|++++++
T Consensus 490 ~~~l~~L~~L~l~~n-~l~~~~~-------~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 490 FNSLSSLQVLNMASN-QLKSVPD-------GIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp TTTCTTCCEEECCSS-CCSCCCT-------TTTTTCTTCCEEECCSSC
T ss_pred hhcccCCCEEeCCCC-cCCCCCH-------HHhhcccCCcEEEecCCc
Confidence 345688888888884 4543110 124677888888888875
No 54
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.00 E-value=5.8e-10 Score=100.32 Aligned_cols=156 Identities=19% Similarity=0.115 Sum_probs=83.2
Q ss_pred HHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHh-cCCCCCEEeccCCCC--CCH-
Q 017279 151 YALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGR-NCNQLQSLNLGWCED--VGD- 226 (374)
Q Consensus 151 ~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~-~~~~L~~L~l~~~~~--~~~- 226 (374)
..+...+|+|+.|.|+++..... ..+ ..++|++|++..+. ++.+.+..+.. .+|+|++|+|+...+ ..+
T Consensus 165 ~~ll~~~P~L~~L~L~g~~~l~l---~~~--~~~~L~~L~L~~~~--l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~ 237 (362)
T 2ra8_A 165 SPVLDAMPLLNNLKIKGTNNLSI---GKK--PRPNLKSLEIISGG--LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG 237 (362)
T ss_dssp HHHHHTCTTCCEEEEECCBTCBC---CSC--BCTTCSEEEEECSB--CCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCS
T ss_pred HHHHhcCCCCcEEEEeCCCCcee---ccc--cCCCCcEEEEecCC--CChHHHHHHHHccCCCCcEEEEeccccccccch
Confidence 34445566677776665422111 111 25667777776544 55555555543 467777776642110 001
Q ss_pred --HHHHHHH--hcCCCCCeeecCCCCCCCHHHHHHHHh--cCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccc
Q 017279 227 --VGVMNLA--YGCPDLRSLDLCGCVCITDDSVIALAN--GCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMK 300 (374)
Q Consensus 227 --~~~~~l~--~~~~~L~~L~l~~~~~l~~~~l~~l~~--~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~ 300 (374)
..+..+. ..+|+|+.|++.+| .+++.....+.+ .+|+|++|+++.+. +++.+...+...
T Consensus 238 ~~~~l~~~l~~~~~p~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~------------- 302 (362)
T 2ra8_A 238 DMNVFRPLFSKDRFPNLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDH------------- 302 (362)
T ss_dssp CGGGTGGGSCTTTCTTCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTT-------------
T ss_pred hHHHHHHHHhcCCCCCcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhh-------------
Confidence 1111111 23677777777764 455444444443 35677777776653 777666665432
Q ss_pred cccCCCCCcEEecCCCCCCCHHHHHHHHhh
Q 017279 301 GRYDEEGLQSLNISQCTALTPPAVQALCDT 330 (374)
Q Consensus 301 ~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~ 330 (374)
+..+++|+.|++++| .+++..++.+.+.
T Consensus 303 -L~~l~~L~~L~L~~n-~i~d~~~~~l~~a 330 (362)
T 2ra8_A 303 -VDKIKHLKFINMKYN-YLSDEMKKELQKS 330 (362)
T ss_dssp -HHHHTTCSEEECCSB-BCCHHHHHHHHHH
T ss_pred -cccCCcceEEECCCC-cCCHHHHHHHHHH
Confidence 012467777777764 5777777766543
No 55
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.99 E-value=3.5e-10 Score=108.27 Aligned_cols=199 Identities=14% Similarity=0.082 Sum_probs=102.4
Q ss_pred CCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHH--HhcCCCCcEEeecCCCCCCHHH-HHHHH
Q 017279 104 LTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYAL--AHGCPNLTRLNISGCTSFSDHA-LAYLC 180 (374)
Q Consensus 104 ~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l--~~~~~~L~~L~L~~~~~~~~~~-~~~l~ 180 (374)
.++++.++++ .+.+.. ....+...+++|++|+++++ .+.+...... ...+++|++|+++++ .++... .....
T Consensus 309 ~~~L~~L~l~--~n~l~~-ip~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~ 383 (549)
T 2z81_A 309 LEKVKRITVE--NSKVFL-VPCSFSQHLKSLEFLDLSEN-LMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEIL 383 (549)
T ss_dssp STTCCEEEEE--SSCCCC-CCHHHHHHCTTCCEEECCSS-CCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHG
T ss_pred cccceEEEec--cCcccc-CCHHHHhcCccccEEEccCC-ccccccccchhhhhccccCcEEEccCC-cccccccchhhh
Confidence 3455566665 222221 11122234666777777665 3444332221 223566777777664 333221 12234
Q ss_pred hcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHh
Q 017279 181 GFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALAN 260 (374)
Q Consensus 181 ~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~ 260 (374)
..+++|++|+++++. +. .+......+++|+.|+++++. ++.. .. ...++|+.|++++| .++.. ..
T Consensus 384 ~~l~~L~~L~Ls~N~--l~--~lp~~~~~~~~L~~L~Ls~N~-l~~l--~~--~~~~~L~~L~Ls~N-~l~~~-----~~ 448 (549)
T 2z81_A 384 LTLKNLTSLDISRNT--FH--PMPDSCQWPEKMRFLNLSSTG-IRVV--KT--CIPQTLEVLDVSNN-NLDSF-----SL 448 (549)
T ss_dssp GGCTTCCEEECTTCC--CC--CCCSCCCCCTTCCEEECTTSC-CSCC--CT--TSCTTCSEEECCSS-CCSCC-----CC
T ss_pred hcCCCCCEEECCCCC--Cc--cCChhhcccccccEEECCCCC-cccc--cc--hhcCCceEEECCCC-Chhhh-----cc
Confidence 456667777776643 22 111122345666777776643 2210 00 01246777777764 34321 13
Q ss_pred cCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCC
Q 017279 261 GCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGR 340 (374)
Q Consensus 261 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L 340 (374)
.+++|+.|+++++. ++. +.. ...+++|+.|++++ +.++.... ..+..+++|
T Consensus 449 ~l~~L~~L~Ls~N~-l~~--ip~------------------~~~l~~L~~L~Ls~-N~l~~~~~-------~~~~~l~~L 499 (549)
T 2z81_A 449 FLPRLQELYISRNK-LKT--LPD------------------ASLFPVLLVMKISR-NQLKSVPD-------GIFDRLTSL 499 (549)
T ss_dssp CCTTCCEEECCSSC-CSS--CCC------------------GGGCTTCCEEECCS-SCCCCCCT-------TGGGGCTTC
T ss_pred cCChhcEEECCCCc-cCc--CCC------------------cccCccCCEEecCC-CccCCcCH-------HHHhcCccc
Confidence 46777777777764 431 111 11358899999998 45653111 124678899
Q ss_pred ceEEecCCccc
Q 017279 341 HSLVMSGCLNL 351 (374)
Q Consensus 341 ~~L~ls~C~~l 351 (374)
+.|++++|+-.
T Consensus 500 ~~L~l~~N~~~ 510 (549)
T 2z81_A 500 QKIWLHTNPWD 510 (549)
T ss_dssp CEEECCSSCBC
T ss_pred CEEEecCCCcc
Confidence 99999998743
No 56
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.99 E-value=1.5e-11 Score=115.87 Aligned_cols=213 Identities=20% Similarity=0.167 Sum_probs=119.3
Q ss_pred cCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCC
Q 017279 80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPN 159 (374)
Q Consensus 80 ~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 159 (374)
.++.|+++++.... ..+..+..+++|+.|+++ .+.++.... ...+++|++|+++++ .++. + ...++
T Consensus 35 ~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls--~N~l~~~~~---l~~l~~L~~L~Ls~N-~l~~-----l-~~~~~ 100 (487)
T 3oja_A 35 NVKELDLSGNPLSQ--ISAADLAPFTKLELLNLS--SNVLYETLD---LESLSTLRTLDLNNN-YVQE-----L-LVGPS 100 (487)
T ss_dssp GCCEEECCSSCCCC--CCGGGGTTCTTCCEEECT--TSCCEEEEE---CTTCTTCCEEECCSS-EEEE-----E-EECTT
T ss_pred CccEEEeeCCcCCC--CCHHHHhCCCCCCEEEee--CCCCCCCcc---cccCCCCCEEEecCC-cCCC-----C-CCCCC
Confidence 47888887765432 122334577888888888 444432111 234778888888876 3322 1 12477
Q ss_pred CcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCC
Q 017279 160 LTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDL 239 (374)
Q Consensus 160 L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 239 (374)
|++|+++++ .+.... ...+++|+.|+++++. +.... ......+++|+.|+++++. +++.....+...+++|
T Consensus 101 L~~L~L~~N-~l~~~~----~~~l~~L~~L~L~~N~--l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L 171 (487)
T 3oja_A 101 IETLHAANN-NISRVS----CSRGQGKKNIYLANNK--ITMLR-DLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTL 171 (487)
T ss_dssp CCEEECCSS-CCCCEE----ECCCSSCEEEECCSSC--CCSGG-GBCGGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTC
T ss_pred cCEEECcCC-cCCCCC----ccccCCCCEEECCCCC--CCCCC-chhhcCCCCCCEEECCCCC-CCCcChHHHhhhCCcc
Confidence 888888764 333211 1235778888887754 33211 1122346778888887753 4443333344456788
Q ss_pred CeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCC
Q 017279 240 RSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTAL 319 (374)
Q Consensus 240 ~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 319 (374)
+.|++++| .++.. .... .+++|+.|+++++. ++... ..+..+++|+.|++++ +.+
T Consensus 172 ~~L~Ls~N-~l~~~--~~~~-~l~~L~~L~Ls~N~-l~~~~-------------------~~~~~l~~L~~L~Ls~-N~l 226 (487)
T 3oja_A 172 EHLNLQYN-FIYDV--KGQV-VFAKLKTLDLSSNK-LAFMG-------------------PEFQSAAGVTWISLRN-NKL 226 (487)
T ss_dssp CEEECTTS-CCCEE--ECCC-CCTTCCEEECCSSC-CCEEC-------------------GGGGGGTTCSEEECTT-SCC
T ss_pred cEEecCCC-ccccc--cccc-cCCCCCEEECCCCC-CCCCC-------------------HhHcCCCCccEEEecC-CcC
Confidence 88888874 34321 1111 36778888887774 44210 0122346777777777 345
Q ss_pred CHHHHHHHHhhCC-CccCCCCCceEEecCCc
Q 017279 320 TPPAVQALCDTFP-ALHTCSGRHSLVMSGCL 349 (374)
Q Consensus 320 ~~~~l~~l~~~~~-~l~~~~~L~~L~ls~C~ 349 (374)
+. +| .+..+++|+.|++++|+
T Consensus 227 ~~---------lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 227 VL---------IEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp CE---------ECTTCCCCTTCCEEECTTCC
T ss_pred cc---------cchhhccCCCCCEEEcCCCC
Confidence 42 12 34556777777777765
No 57
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.98 E-value=7.9e-10 Score=97.68 Aligned_cols=172 Identities=17% Similarity=0.167 Sum_probs=119.0
Q ss_pred CCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcC
Q 017279 131 CHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNC 210 (374)
Q Consensus 131 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~ 210 (374)
+++|++|+++++ .+.. +..+ ..+++|++|+++++ .+.+.. . ...+++|++|+++++. +... . ....+
T Consensus 40 l~~L~~L~l~~~-~i~~--l~~~-~~l~~L~~L~L~~n-~i~~~~--~-~~~l~~L~~L~L~~n~--l~~~--~-~~~~l 106 (308)
T 1h6u_A 40 LDGITTLSAFGT-GVTT--IEGV-QYLNNLIGLELKDN-QITDLA--P-LKNLTKITELELSGNP--LKNV--S-AIAGL 106 (308)
T ss_dssp HHTCCEEECTTS-CCCC--CTTG-GGCTTCCEEECCSS-CCCCCG--G-GTTCCSCCEEECCSCC--CSCC--G-GGTTC
T ss_pred cCCcCEEEeeCC-CccC--chhh-hccCCCCEEEccCC-cCCCCh--h-HccCCCCCEEEccCCc--CCCc--h-hhcCC
Confidence 568899999886 3332 1222 44899999999985 444322 2 5678999999999865 3332 2 24468
Q ss_pred CCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCC
Q 017279 211 NQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVK 290 (374)
Q Consensus 211 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~ 290 (374)
++|++|+++++. +++. .. ...+++|+.|++++| .++... . ...+++|+.|++++|. +++...
T Consensus 107 ~~L~~L~l~~n~-l~~~--~~-l~~l~~L~~L~l~~n-~l~~~~--~-l~~l~~L~~L~l~~n~-l~~~~~--------- 168 (308)
T 1h6u_A 107 QSIKTLDLTSTQ-ITDV--TP-LAGLSNLQVLYLDLN-QITNIS--P-LAGLTNLQYLSIGNAQ-VSDLTP--------- 168 (308)
T ss_dssp TTCCEEECTTSC-CCCC--GG-GTTCTTCCEEECCSS-CCCCCG--G-GGGCTTCCEEECCSSC-CCCCGG---------
T ss_pred CCCCEEECCCCC-CCCc--hh-hcCCCCCCEEECCCC-ccCcCc--c-ccCCCCccEEEccCCc-CCCChh---------
Confidence 999999999865 4442 22 457899999999996 454322 1 3468999999999985 543111
Q ss_pred CCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCccccccc
Q 017279 291 NKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVH 355 (374)
Q Consensus 291 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~~~~ 355 (374)
+..+++|+.|+++++ .+++ ++.+..+++|+.|++++|. ++...
T Consensus 169 -----------l~~l~~L~~L~l~~n-~l~~---------~~~l~~l~~L~~L~L~~N~-l~~~~ 211 (308)
T 1h6u_A 169 -----------LANLSKLTTLKADDN-KISD---------ISPLASLPNLIEVHLKNNQ-ISDVS 211 (308)
T ss_dssp -----------GTTCTTCCEEECCSS-CCCC---------CGGGGGCTTCCEEECTTSC-CCBCG
T ss_pred -----------hcCCCCCCEEECCCC-ccCc---------ChhhcCCCCCCEEEccCCc-cCccc
Confidence 224589999999984 5653 2225678999999999995 65544
No 58
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.97 E-value=4.4e-10 Score=98.47 Aligned_cols=35 Identities=20% Similarity=0.124 Sum_probs=19.0
Q ss_pred CCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCc
Q 017279 305 EEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCL 349 (374)
Q Consensus 305 ~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~ 349 (374)
+++|++|+++++ .+++ ++.+..+++|+.|++++++
T Consensus 177 l~~L~~L~L~~N-~i~~---------l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 177 LTKLQNLYLSKN-HISD---------LRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp CTTCCEEECCSS-CCCB---------CGGGTTCTTCSEEEEEEEE
T ss_pred CCccCEEECCCC-cCCC---------ChhhccCCCCCEEECcCCc
Confidence 356666666663 4442 2233455666666666653
No 59
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.96 E-value=5.8e-13 Score=118.23 Aligned_cols=229 Identities=18% Similarity=0.099 Sum_probs=144.0
Q ss_pred ccCceeeccc-ccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcC
Q 017279 79 LGLTHLSLSW-CKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC 157 (374)
Q Consensus 79 ~~l~~L~l~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 157 (374)
..+++|+++. ..... ..+..+..+++|++|+++ .+.+.......+ ..+++|++|+++++. +.......+ ..+
T Consensus 76 ~~L~~L~L~~~n~l~~--~~p~~l~~l~~L~~L~Ls--~n~l~~~~p~~~-~~l~~L~~L~Ls~N~-l~~~~p~~~-~~l 148 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVG--PIPPAIAKLTQLHYLYIT--HTNVSGAIPDFL-SQIKTLVTLDFSYNA-LSGTLPPSI-SSL 148 (313)
T ss_dssp TTCSEEEEEEETTEES--CCCGGGGGCTTCSEEEEE--EECCEEECCGGG-GGCTTCCEEECCSSE-EESCCCGGG-GGC
T ss_pred CCCCeeeCCCCCcccc--cCChhHhcCCCCCEEECc--CCeeCCcCCHHH-hCCCCCCEEeCCCCc-cCCcCChHH-hcC
Confidence 4589999984 33221 122334688999999999 444442222222 348999999999973 322111222 348
Q ss_pred CCCcEEeecCCCCCCHHHHHHHHhcCC-CCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcC
Q 017279 158 PNLTRLNISGCTSFSDHALAYLCGFCR-KLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGC 236 (374)
Q Consensus 158 ~~L~~L~L~~~~~~~~~~~~~l~~~~~-~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 236 (374)
++|++|+++++ .+... ++.....++ +|++|+++++. +.... ......++ |+.|+++++. +... .......+
T Consensus 149 ~~L~~L~L~~N-~l~~~-~p~~l~~l~~~L~~L~L~~N~--l~~~~-~~~~~~l~-L~~L~Ls~N~-l~~~-~~~~~~~l 220 (313)
T 1ogq_A 149 PNLVGITFDGN-RISGA-IPDSYGSFSKLFTSMTISRNR--LTGKI-PPTFANLN-LAFVDLSRNM-LEGD-ASVLFGSD 220 (313)
T ss_dssp TTCCEEECCSS-CCEEE-CCGGGGCCCTTCCEEECCSSE--EEEEC-CGGGGGCC-CSEEECCSSE-EEEC-CGGGCCTT
T ss_pred CCCCeEECcCC-cccCc-CCHHHhhhhhcCcEEECcCCe--eeccC-ChHHhCCc-ccEEECcCCc-ccCc-CCHHHhcC
Confidence 99999999985 33311 112233465 99999999865 33211 11223344 9999998864 3321 12233468
Q ss_pred CCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCC
Q 017279 237 PDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQC 316 (374)
Q Consensus 237 ~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 316 (374)
++|+.|+++++ .++.. +.. ...+++|+.|+++++. ++..... .+..+++|++|+++++
T Consensus 221 ~~L~~L~L~~N-~l~~~-~~~-~~~l~~L~~L~Ls~N~-l~~~~p~------------------~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 221 KNTQKIHLAKN-SLAFD-LGK-VGLSKNLNGLDLRNNR-IYGTLPQ------------------GLTQLKFLHSLNVSFN 278 (313)
T ss_dssp SCCSEEECCSS-EECCB-GGG-CCCCTTCCEEECCSSC-CEECCCG------------------GGGGCTTCCEEECCSS
T ss_pred CCCCEEECCCC-ceeee-cCc-ccccCCCCEEECcCCc-ccCcCCh------------------HHhcCcCCCEEECcCC
Confidence 99999999995 44321 111 2357999999999985 4421111 2335689999999994
Q ss_pred CCCCHHHHHHHHhhCCCccCCCCCceEEecCCccccc
Q 017279 317 TALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTS 353 (374)
Q Consensus 317 ~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~~ 353 (374)
.++ ...|....+++|+.|++++++.+.+
T Consensus 279 -~l~--------~~ip~~~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 279 -NLC--------GEIPQGGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp -EEE--------EECCCSTTGGGSCGGGTCSSSEEES
T ss_pred -ccc--------ccCCCCccccccChHHhcCCCCccC
Confidence 454 2456667789999999999986654
No 60
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.95 E-value=6.1e-12 Score=122.02 Aligned_cols=228 Identities=18% Similarity=0.107 Sum_probs=145.4
Q ss_pred ccCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHH-HHHHHhcC
Q 017279 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRS-LYALAHGC 157 (374)
Q Consensus 79 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~-~~~l~~~~ 157 (374)
..++.+++..+... . ++.+ .+++|+.|+++ .+...... . ...+++|++|+++++ .++... .......+
T Consensus 307 ~~L~~L~l~~n~l~--~-lp~~--~l~~L~~L~l~-~n~~~~~~---~-~~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~ 375 (606)
T 3vq2_A 307 FKWQSLSIIRCQLK--Q-FPTL--DLPFLKSLTLT-MNKGSISF---K-KVALPSLSYLDLSRN-ALSFSGCCSYSDLGT 375 (606)
T ss_dssp CCCSEEEEESCCCS--S-CCCC--CCSSCCEEEEE-SCSSCEEC---C-CCCCTTCCEEECCSS-CEEEEEECCHHHHCC
T ss_pred ccCCEEEcccccCc--c-cccC--CCCccceeecc-CCcCccch---h-hccCCCCCEEECcCC-ccCCCcchhhhhccC
Confidence 35889999887652 1 2222 78999999999 44333322 1 124789999999987 332211 01223458
Q ss_pred CCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCC
Q 017279 158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCP 237 (374)
Q Consensus 158 ~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 237 (374)
++|++|+++++. +.. ++.....+++|++|+++++. +...........+++|+.|+++++. +... .......++
T Consensus 376 ~~L~~L~L~~n~-l~~--~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~ 448 (606)
T 3vq2_A 376 NSLRHLDLSFNG-AII--MSANFMGLEELQHLDFQHST--LKRVTEFSAFLSLEKLLYLDISYTN-TKID-FDGIFLGLT 448 (606)
T ss_dssp SCCCEEECCSCS-EEE--ECCCCTTCTTCCEEECTTSE--EESTTTTTTTTTCTTCCEEECTTSC-CEEC-CTTTTTTCT
T ss_pred CcccEeECCCCc-ccc--chhhccCCCCCCeeECCCCc--cCCccChhhhhccccCCEEECcCCC-CCcc-chhhhcCCC
Confidence 999999999853 322 11223458999999999865 3322211234568999999999865 3221 112234689
Q ss_pred CCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCC
Q 017279 238 DLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCT 317 (374)
Q Consensus 238 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 317 (374)
+|++|++++| .++...+......+++|+.|++++|. ++.... ..+..+++|++|+++++
T Consensus 449 ~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~------------------~~~~~l~~L~~L~Ls~N- 507 (606)
T 3vq2_A 449 SLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKCQ-LEQISW------------------GVFDTLHRLQLLNMSHN- 507 (606)
T ss_dssp TCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSC-CCEECT------------------TTTTTCTTCCEEECCSS-
T ss_pred CCCEEECCCC-cCCCcchHHhhccCCCCCEEECCCCc-CCccCh------------------hhhcccccCCEEECCCC-
Confidence 9999999996 44432222233458999999999985 543111 11335689999999995
Q ss_pred CCCHHHHHHHHhhCCCccCCCCCceEEecCCccccc
Q 017279 318 ALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTS 353 (374)
Q Consensus 318 ~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~~ 353 (374)
.++.... ..+..+++|+.|++++|. ++.
T Consensus 508 ~l~~~~~-------~~~~~l~~L~~L~l~~N~-l~~ 535 (606)
T 3vq2_A 508 NLLFLDS-------SHYNQLYSLSTLDCSFNR-IET 535 (606)
T ss_dssp CCSCEEG-------GGTTTCTTCCEEECTTSC-CCC
T ss_pred cCCCcCH-------HHccCCCcCCEEECCCCc-Ccc
Confidence 5653211 124678999999999995 654
No 61
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.95 E-value=3.8e-11 Score=119.78 Aligned_cols=155 Identities=12% Similarity=0.085 Sum_probs=81.3
Q ss_pred ccCceeecccccccchH---------------HHHHHhh--cCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCC
Q 017279 79 LGLTHLSLSWCKNNMNN---------------LVLSLAP--KLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSK 141 (374)
Q Consensus 79 ~~l~~L~l~~~~~~~~~---------------~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 141 (374)
..++.|+++.+...... .++.... .+++|+.|+++ .+ .+.......+ ..+++|+.|++++
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls-~N-~l~~~iP~~l-~~L~~L~~L~Ls~ 524 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELY-NC-PNMTQLPDFL-YDLPELQSLNIAC 524 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEE-SC-TTCCSCCGGG-GGCSSCCEEECTT
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECc-CC-CCCccChHHH-hCCCCCCEEECcC
Confidence 44788888776544310 1222222 67888888888 33 2222222222 3477888888888
Q ss_pred CCCCCH-HHHHHHH------hcCCCCcEEeecCCCCCCHHHHHH--HHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCC
Q 017279 142 SFKLSD-RSLYALA------HGCPNLTRLNISGCTSFSDHALAY--LCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQ 212 (374)
Q Consensus 142 ~~~~~~-~~~~~l~------~~~~~L~~L~L~~~~~~~~~~~~~--l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~ 212 (374)
+..++. .....+. ..+++|+.|+++++ .+. .++. ....+++|+.|+++++. +. .++ ....+++
T Consensus 525 N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~--~ip~~~~l~~L~~L~~L~Ls~N~--l~--~lp-~~~~L~~ 596 (876)
T 4ecn_A 525 NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLE--EFPASASLQKMVKLGLLDCVHNK--VR--HLE-AFGTNVK 596 (876)
T ss_dssp CTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCC--BCCCHHHHTTCTTCCEEECTTSC--CC--BCC-CCCTTSE
T ss_pred CCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCC--ccCChhhhhcCCCCCEEECCCCC--cc--cch-hhcCCCc
Confidence 643554 2222222 23458888888774 444 2333 34557778888877654 22 222 2334566
Q ss_pred CCEEeccCCCCCCHHHHHHHHhcCCC-CCeeecCCC
Q 017279 213 LQSLNLGWCEDVGDVGVMNLAYGCPD-LRSLDLCGC 247 (374)
Q Consensus 213 L~~L~l~~~~~~~~~~~~~l~~~~~~-L~~L~l~~~ 247 (374)
|+.|+++++. +.. +......+++ |+.|++++|
T Consensus 597 L~~L~Ls~N~-l~~--lp~~l~~l~~~L~~L~Ls~N 629 (876)
T 4ecn_A 597 LTDLKLDYNQ-IEE--IPEDFCAFTDQVEGLGFSHN 629 (876)
T ss_dssp ESEEECCSSC-CSC--CCTTSCEECTTCCEEECCSS
T ss_pred ceEEECcCCc-ccc--chHHHhhccccCCEEECcCC
Confidence 6666666543 221 1111223445 566666553
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.94 E-value=3.9e-12 Score=118.44 Aligned_cols=207 Identities=20% Similarity=0.165 Sum_probs=132.8
Q ss_pred CCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCC
Q 017279 105 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCR 184 (374)
Q Consensus 105 ~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~ 184 (374)
++++.|+++ .+.+.......+ ..+++|++|+++++ .++...... ...+++|++|+++++ .++... ...+..++
T Consensus 64 ~~l~~L~L~--~n~i~~~~~~~~-~~l~~L~~L~Ls~n-~i~~i~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~ 136 (440)
T 3zyj_A 64 TNTRLLNLH--ENQIQIIKVNSF-KHLRHLEILQLSRN-HIRTIEIGA-FNGLANLNTLELFDN-RLTTIP-NGAFVYLS 136 (440)
T ss_dssp TTCSEEECC--SCCCCEECTTTT-SSCSSCCEEECCSS-CCCEECGGG-GTTCSSCCEEECCSS-CCSSCC-TTTSCSCS
T ss_pred CCCcEEEcc--CCcCCeeCHHHh-hCCCCCCEEECCCC-cCCccChhh-ccCCccCCEEECCCC-cCCeeC-HhHhhccc
Confidence 679999999 455544322222 35889999999997 343322222 234899999999985 444211 11234689
Q ss_pred CCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCC
Q 017279 185 KLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPH 264 (374)
Q Consensus 185 ~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~ 264 (374)
+|++|+++++. +.... ...+..+++|++|+++++..+.... ......+++|+.|++++| .++. +..+ ..+++
T Consensus 137 ~L~~L~L~~N~--i~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n-~l~~--~~~~-~~l~~ 208 (440)
T 3zyj_A 137 KLKELWLRNNP--IESIP-SYAFNRIPSLRRLDLGELKRLSYIS-EGAFEGLSNLRYLNLAMC-NLRE--IPNL-TPLIK 208 (440)
T ss_dssp SCCEEECCSCC--CCEEC-TTTTTTCTTCCEEECCCCTTCCEEC-TTTTTTCSSCCEEECTTS-CCSS--CCCC-TTCSS
T ss_pred cCceeeCCCCc--ccccC-HHHhhhCcccCEeCCCCCCCcceeC-cchhhcccccCeecCCCC-cCcc--cccc-CCCcc
Confidence 99999999854 33111 1234468999999998765443321 112346899999999996 4542 2222 34789
Q ss_pred CceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEE
Q 017279 265 LRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLV 344 (374)
Q Consensus 265 L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ 344 (374)
|+.|+++++. ++.... ..+..+++|+.|++++ +.++.... ..+..+++|+.|+
T Consensus 209 L~~L~Ls~N~-l~~~~~------------------~~~~~l~~L~~L~L~~-n~l~~~~~-------~~~~~l~~L~~L~ 261 (440)
T 3zyj_A 209 LDELDLSGNH-LSAIRP------------------GSFQGLMHLQKLWMIQ-SQIQVIER-------NAFDNLQSLVEIN 261 (440)
T ss_dssp CCEEECTTSC-CCEECT------------------TTTTTCTTCCEEECTT-CCCCEECT-------TSSTTCTTCCEEE
T ss_pred cCEEECCCCc-cCccCh------------------hhhccCccCCEEECCC-CceeEECh-------hhhcCCCCCCEEE
Confidence 9999999885 543111 1234569999999998 45653211 1346789999999
Q ss_pred ecCCcccccc
Q 017279 345 MSGCLNLTSV 354 (374)
Q Consensus 345 ls~C~~l~~~ 354 (374)
+++| +++..
T Consensus 262 L~~N-~l~~~ 270 (440)
T 3zyj_A 262 LAHN-NLTLL 270 (440)
T ss_dssp CTTS-CCCCC
T ss_pred CCCC-CCCcc
Confidence 9998 46543
No 63
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.94 E-value=3.5e-09 Score=95.20 Aligned_cols=177 Identities=21% Similarity=0.220 Sum_probs=122.5
Q ss_pred hhcCCCCcEEEeeCCCCC-------CChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCH
Q 017279 101 APKLTKLQTLVLRQDKPQ-------LEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSD 173 (374)
Q Consensus 101 ~~~~~~L~~L~l~~~~~~-------~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~ 173 (374)
...+++|+.|.+. .... ++...+..+...+|+|++|.+.++..+.- ..+ ..++|++|++..| .+++
T Consensus 135 ~~~l~~L~~L~l~-~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l---~~~--~~~~L~~L~L~~~-~l~~ 207 (362)
T 2ra8_A 135 KEKFAHFEGLFWG-DIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI---GKK--PRPNLKSLEIISG-GLPD 207 (362)
T ss_dssp HHHHTTCSEEEEC-CCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBC---CSC--BCTTCSEEEEECS-BCCH
T ss_pred hhhcchhhheeec-CcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCcee---ccc--cCCCCcEEEEecC-CCCh
Confidence 4467899999986 2211 11112445666789999999988632221 111 2689999999874 6888
Q ss_pred HHHHHHHh-cCCCCcEEEcCCCccCc-cH---HHHHHHH--hcCCCCCEEeccCCCCCCHHHHHHHHh--cCCCCCeeec
Q 017279 174 HALAYLCG-FCRKLKILNLCGCVKAA-TD---YALQAIG--RNCNQLQSLNLGWCEDVGDVGVMNLAY--GCPDLRSLDL 244 (374)
Q Consensus 174 ~~~~~l~~-~~~~L~~L~L~~~~~~~-~~---~~~~~l~--~~~~~L~~L~l~~~~~~~~~~~~~l~~--~~~~L~~L~l 244 (374)
..+..+.. .+|+|++|+|....+.. .+ ..+..+. ..+|+|+.|++.++. +.+.....+.. .+|+|++|++
T Consensus 208 ~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~-i~~~~~~~la~a~~~~~L~~LdL 286 (362)
T 2ra8_A 208 SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE-EQNVVVEMFLESDILPQLETMDI 286 (362)
T ss_dssp HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT-THHHHHHHHHHCSSGGGCSEEEC
T ss_pred HHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC-CchHHHHHHHhCccCCCCCEEEC
Confidence 88777653 69999999986321100 11 1112222 358999999998854 66555555543 4789999999
Q ss_pred CCCCCCCHHHHHHHHh---cCCCCceEecCCCCCCCHHHHHHHHhc
Q 017279 245 CGCVCITDDSVIALAN---GCPHLRSLGLYYCRNITDRAIYSLAQS 287 (374)
Q Consensus 245 ~~~~~l~~~~l~~l~~---~~~~L~~L~l~~~~~i~~~~~~~l~~~ 287 (374)
+. +.+++.+...+.. .+++|+.|++++|. +++.++..+...
T Consensus 287 s~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~-i~d~~~~~l~~a 330 (362)
T 2ra8_A 287 SA-GVLTDEGARLLLDHVDKIKHLKFINMKYNY-LSDEMKKELQKS 330 (362)
T ss_dssp CS-SCCBHHHHHHHHTTHHHHTTCSEEECCSBB-CCHHHHHHHHHH
T ss_pred CC-CCCChHHHHHHHhhcccCCcceEEECCCCc-CCHHHHHHHHHH
Confidence 88 5799887766654 47999999999885 999999999874
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.94 E-value=7.4e-12 Score=116.99 Aligned_cols=207 Identities=17% Similarity=0.147 Sum_probs=132.5
Q ss_pred CCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCC
Q 017279 105 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCR 184 (374)
Q Consensus 105 ~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~ 184 (374)
++++.|+++ .+.+.......+ ..+++|++|+++++ .++......+ ..+++|++|+|+++ .++... ......++
T Consensus 75 ~~l~~L~L~--~n~i~~~~~~~~-~~l~~L~~L~Ls~n-~i~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~ 147 (452)
T 3zyi_A 75 SNTRYLNLM--ENNIQMIQADTF-RHLHHLEVLQLGRN-SIRQIEVGAF-NGLASLNTLELFDN-WLTVIP-SGAFEYLS 147 (452)
T ss_dssp TTCSEEECC--SSCCCEECTTTT-TTCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSS-CCSBCC-TTTSSSCT
T ss_pred CCccEEECc--CCcCceECHHHc-CCCCCCCEEECCCC-ccCCcChhhc-cCcccCCEEECCCC-cCCccC-hhhhcccC
Confidence 689999999 455544322222 35889999999987 4433221222 34799999999985 443211 11234589
Q ss_pred CCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCC
Q 017279 185 KLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPH 264 (374)
Q Consensus 185 ~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~ 264 (374)
+|++|+++++. +.... ...+..+++|+.|+++++..+.... ......+++|+.|++++| .++. +..+ ..+++
T Consensus 148 ~L~~L~L~~N~--l~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n-~l~~--~~~~-~~l~~ 219 (452)
T 3zyi_A 148 KLRELWLRNNP--IESIP-SYAFNRVPSLMRLDLGELKKLEYIS-EGAFEGLFNLKYLNLGMC-NIKD--MPNL-TPLVG 219 (452)
T ss_dssp TCCEEECCSCC--CCEEC-TTTTTTCTTCCEEECCCCTTCCEEC-TTTTTTCTTCCEEECTTS-CCSS--CCCC-TTCTT
T ss_pred CCCEEECCCCC--cceeC-HhHHhcCCcccEEeCCCCCCccccC-hhhccCCCCCCEEECCCC-cccc--cccc-ccccc
Confidence 99999999854 33111 1234568999999998765444321 112346799999999995 4542 1222 34789
Q ss_pred CceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEE
Q 017279 265 LRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLV 344 (374)
Q Consensus 265 L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ 344 (374)
|+.|+++++. ++.... ..+..+++|+.|++++ +.++.... ..+..+++|+.|+
T Consensus 220 L~~L~Ls~N~-l~~~~~------------------~~~~~l~~L~~L~L~~-n~l~~~~~-------~~~~~l~~L~~L~ 272 (452)
T 3zyi_A 220 LEELEMSGNH-FPEIRP------------------GSFHGLSSLKKLWVMN-SQVSLIER-------NAFDGLASLVELN 272 (452)
T ss_dssp CCEEECTTSC-CSEECG------------------GGGTTCTTCCEEECTT-SCCCEECT-------TTTTTCTTCCEEE
T ss_pred ccEEECcCCc-CcccCc------------------ccccCccCCCEEEeCC-CcCceECH-------HHhcCCCCCCEEE
Confidence 9999999885 443111 1234568999999998 45653211 1246789999999
Q ss_pred ecCCcccccc
Q 017279 345 MSGCLNLTSV 354 (374)
Q Consensus 345 ls~C~~l~~~ 354 (374)
+++| +++..
T Consensus 273 L~~N-~l~~~ 281 (452)
T 3zyi_A 273 LAHN-NLSSL 281 (452)
T ss_dssp CCSS-CCSCC
T ss_pred CCCC-cCCcc
Confidence 9999 46544
No 65
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.94 E-value=2.9e-11 Score=116.96 Aligned_cols=244 Identities=14% Similarity=0.055 Sum_probs=110.8
Q ss_pred ccCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCC
Q 017279 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP 158 (374)
Q Consensus 79 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 158 (374)
..++.|+++++.... .....+..+++|+.|+++ .+.+....... ...+++|++|+++++ .++.- ...+...++
T Consensus 75 ~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~--~n~l~~~~~~~-~~~l~~L~~L~L~~n-~l~~l-~~~~~~~l~ 147 (597)
T 3oja_B 75 RQVELLNLNDLQIEE--IDTYAFAYAHTIQKLYMG--FNAIRYLPPHV-FQNVPLLTVLVLERN-DLSSL-PRGIFHNTP 147 (597)
T ss_dssp CCCSEEECTTSCCCE--ECTTTTTTCTTCCEEECC--SSCCCCCCTTT-TTTCTTCCEEECCSS-CCCCC-CTTTTTTCT
T ss_pred CCCcEEECCCCCCCC--CChHHhcCCCCCCEEECC--CCcCCCCCHHH-HcCCCCCCEEEeeCC-CCCCC-CHHHhccCC
Confidence 346667766554321 111233456677777776 33333221111 133667777777765 23211 111123366
Q ss_pred CCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHH----------
Q 017279 159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVG---------- 228 (374)
Q Consensus 159 ~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~---------- 228 (374)
+|++|+++++ .+.... +.....+++|++|+++++. +.... ...+++|+.|+++++. ++...
T Consensus 148 ~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~L~~N~--l~~~~----~~~l~~L~~L~l~~n~-l~~l~~~~~L~~L~l 218 (597)
T 3oja_B 148 KLTTLSMSNN-NLERIE-DDTFQATTSLQNLQLSSNR--LTHVD----LSLIPSLFHANVSYNL-LSTLAIPIAVEELDA 218 (597)
T ss_dssp TCCEEECCSS-CCCBCC-TTTTTTCTTCCEEECTTSC--CSBCC----GGGCTTCSEEECCSSC-CSEEECCTTCSEEEC
T ss_pred CCCEEEeeCC-cCCCCC-hhhhhcCCcCcEEECcCCC--CCCcC----hhhhhhhhhhhcccCc-cccccCCchhheeec
Confidence 7777777764 332211 1112346777777777644 22211 2235555555554432 11100
Q ss_pred ----HHHH-HhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcC-CCCCCcccccc---
Q 017279 229 ----VMNL-AYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSG-VKNKPGIWESM--- 299 (374)
Q Consensus 229 ----~~~l-~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~-~~~~~~~~~~~--- 299 (374)
+..+ ....++|+.|++++| .+++. . ....+++|+.|+++++. ++......+.... +.......+.+
T Consensus 219 s~n~l~~~~~~~~~~L~~L~L~~n-~l~~~--~-~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~l 293 (597)
T 3oja_B 219 SHNSINVVRGPVNVELTILKLQHN-NLTDT--A-WLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRLVAL 293 (597)
T ss_dssp CSSCCCEEECSCCSCCCEEECCSS-CCCCC--G-GGGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECTTSCCCEE
T ss_pred cCCcccccccccCCCCCEEECCCC-CCCCC--h-hhccCCCCCEEECCCCc-cCCCCHHHhcCccCCCEEECCCCCCCCC
Confidence 0000 001245666666664 33321 1 22347888888888774 4432111111110 00000111111
Q ss_pred -ccccCCCCCcEEecCCCCCCCHHHHHHHHhhCC-CccCCCCCceEEecCCcccccc
Q 017279 300 -KGRYDEEGLQSLNISQCTALTPPAVQALCDTFP-ALHTCSGRHSLVMSGCLNLTSV 354 (374)
Q Consensus 300 -~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~-~l~~~~~L~~L~ls~C~~l~~~ 354 (374)
..+..+++|+.|++++| .++. +| .+..+++|+.|++++|. ++..
T Consensus 294 ~~~~~~l~~L~~L~Ls~N-~l~~---------i~~~~~~l~~L~~L~L~~N~-l~~~ 339 (597)
T 3oja_B 294 NLYGQPIPTLKVLDLSHN-HLLH---------VERNQPQFDRLENLYLDHNS-IVTL 339 (597)
T ss_dssp ECSSSCCTTCCEEECCSS-CCCC---------CGGGHHHHTTCSEEECCSSC-CCCC
T ss_pred CcccccCCCCcEEECCCC-CCCc---------cCcccccCCCCCEEECCCCC-CCCc
Confidence 11345677777777763 4441 11 22456777777777775 4443
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.94 E-value=1.3e-10 Score=103.23 Aligned_cols=220 Identities=15% Similarity=0.057 Sum_probs=113.8
Q ss_pred HHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHH
Q 017279 95 NLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDH 174 (374)
Q Consensus 95 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~ 174 (374)
.....+...+++|+.|+++ .+.+.......+ ..+++|++|+++++. ++... . ...+++|++|+++++ .++..
T Consensus 24 ~~~~~~~~~~~~L~~L~L~--~n~l~~~~~~~~-~~l~~L~~L~Ls~n~-l~~~~--~-~~~l~~L~~L~Ls~n-~l~~l 95 (317)
T 3o53_A 24 QALASLRQSAWNVKELDLS--GNPLSQISAADL-APFTKLELLNLSSNV-LYETL--D-LESLSTLRTLDLNNN-YVQEL 95 (317)
T ss_dssp HHHHHHHTTGGGCSEEECT--TSCCCCCCHHHH-TTCTTCCEEECTTSC-CEEEE--E-ETTCTTCCEEECCSS-EEEEE
T ss_pred hhHHHHhccCCCCCEEECc--CCccCcCCHHHh-hCCCcCCEEECCCCc-CCcch--h-hhhcCCCCEEECcCC-ccccc
Confidence 3455666677899999999 455554333333 458999999999973 33211 1 345789999999875 33321
Q ss_pred HHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHH
Q 017279 175 ALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDS 254 (374)
Q Consensus 175 ~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~ 254 (374)
...++|++|+++++. +.... ...+++|+.|+++++. ++.... .....+++|+.|++++| .++...
T Consensus 96 ------~~~~~L~~L~l~~n~--l~~~~----~~~~~~L~~L~l~~N~-l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~ 160 (317)
T 3o53_A 96 ------LVGPSIETLHAANNN--ISRVS----CSRGQGKKNIYLANNK-ITMLRD-LDEGCRSRVQYLDLKLN-EIDTVN 160 (317)
T ss_dssp ------EECTTCCEEECCSSC--CSEEE----ECCCSSCEEEECCSSC-CCSGGG-BCTGGGSSEEEEECTTS-CCCEEE
T ss_pred ------cCCCCcCEEECCCCc--cCCcC----ccccCCCCEEECCCCC-CCCccc-hhhhccCCCCEEECCCC-CCCccc
Confidence 124677777777643 22111 1135566666666543 332110 11123566666666663 343322
Q ss_pred HHHHHhcCCCCceEecCCCCCCCHHHHHHHHhc-CCCCCCcccc----ccccccCCCCCcEEecCCCCCCCHHHHHHHHh
Q 017279 255 VIALANGCPHLRSLGLYYCRNITDRAIYSLAQS-GVKNKPGIWE----SMKGRYDEEGLQSLNISQCTALTPPAVQALCD 329 (374)
Q Consensus 255 l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~-~~~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~ 329 (374)
...+...+++|+.|+++++. ++.. ...... ..+......+ ....+..+++|++|+++++ .++. +
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~-l~~~--~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N-~l~~-----l-- 229 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNF-IYDV--KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVL-----I-- 229 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSC-CCEE--ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTS-CCCE-----E--
T ss_pred HHHHhhccCcCCEEECCCCc-Cccc--ccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCC-cccc-----h--
Confidence 22333345666666666654 3321 000000 0000000000 0111345577777777773 4542 0
Q ss_pred hCCCccCCCCCceEEecCCc
Q 017279 330 TFPALHTCSGRHSLVMSGCL 349 (374)
Q Consensus 330 ~~~~l~~~~~L~~L~ls~C~ 349 (374)
-+.+..+++|+.|++++++
T Consensus 230 -~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 230 -EKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp -CTTCCCCTTCCEEECTTCC
T ss_pred -hhHhhcCCCCCEEEccCCC
Confidence 1124566777777777775
No 67
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.93 E-value=4.6e-10 Score=106.74 Aligned_cols=175 Identities=18% Similarity=0.192 Sum_probs=103.5
Q ss_pred CCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccH-HHHHHHHhcC
Q 017279 132 HDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATD-YALQAIGRNC 210 (374)
Q Consensus 132 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~-~~~~~l~~~~ 210 (374)
.+|+.|+++++. +....+ ...+++|++|+++++ .+..... .....+++|++|+++++. +.. ..+......+
T Consensus 302 ~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~N~--l~~l~~~~~~~~~l 373 (520)
T 2z7x_B 302 MNIKNFTVSGTR-MVHMLC---PSKISPFLHLDFSNN-LLTDTVF-ENCGHLTELETLILQMNQ--LKELSKIAEMTTQM 373 (520)
T ss_dssp CCCSEEEEESSC-CCCCCC---CSSCCCCCEEECCSS-CCCTTTT-TTCCCCSSCCEEECCSSC--CCBHHHHHHHHTTC
T ss_pred CceeEEEcCCCc-cccccc---hhhCCcccEEEeECC-ccChhhh-hhhccCCCCCEEEccCCc--cCccccchHHHhhC
Confidence 467777777753 221110 134678888888774 3433111 122457788888888755 333 2344445567
Q ss_pred CCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcC-CCCceEecCCCCCCCHHHHHHHHhcCC
Q 017279 211 NQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGC-PHLRSLGLYYCRNITDRAIYSLAQSGV 289 (374)
Q Consensus 211 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~-~~L~~L~l~~~~~i~~~~~~~l~~~~~ 289 (374)
++|+.|+++++. +.+.........+++|++|++++| .++.... ... ++|+.|++++|. ++. +
T Consensus 374 ~~L~~L~Ls~N~-l~~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~----~~l~~~L~~L~Ls~N~-l~~--i-------- 436 (520)
T 2z7x_B 374 KSLQQLDISQNS-VSYDEKKGDCSWTKSLLSLNMSSN-ILTDTIF----RCLPPRIKVLDLHSNK-IKS--I-------- 436 (520)
T ss_dssp TTCCEEECCSSC-CBCCGGGCSCCCCTTCCEEECCSS-CCCGGGG----GSCCTTCCEEECCSSC-CCC--C--------
T ss_pred CCCCEEECCCCc-CCcccccchhccCccCCEEECcCC-CCCcchh----hhhcccCCEEECCCCc-ccc--c--------
Confidence 888888887754 332111112234678888888884 4543221 122 578888888774 441 0
Q ss_pred CCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCC--CccCCCCCceEEecCCcc
Q 017279 290 KNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFP--ALHTCSGRHSLVMSGCLN 350 (374)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~--~l~~~~~L~~L~ls~C~~ 350 (374)
+..+..+++|++|+++++ .++. +| .+..+++|+.|++++++-
T Consensus 437 ---------p~~~~~l~~L~~L~L~~N-~l~~---------l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 437 ---------PKQVVKLEALQELNVASN-QLKS---------VPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp ---------CGGGGGCTTCCEEECCSS-CCCC---------CCTTTTTTCTTCCEEECCSSCB
T ss_pred ---------chhhhcCCCCCEEECCCC-cCCc---------cCHHHhccCCcccEEECcCCCC
Confidence 111234689999999984 5652 22 246789999999999873
No 68
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.93 E-value=3e-10 Score=93.46 Aligned_cols=149 Identities=21% Similarity=0.231 Sum_probs=77.8
Q ss_pred CCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCC
Q 017279 158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCP 237 (374)
Q Consensus 158 ~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 237 (374)
++|++|+++++ .+.+ ++ ....+++|++|+++++. +... . ....+++|++|+++++. +++..... ...++
T Consensus 44 ~~L~~L~l~~n-~i~~--l~-~l~~l~~L~~L~l~~n~--~~~~--~-~l~~l~~L~~L~l~~n~-l~~~~~~~-l~~l~ 112 (197)
T 4ezg_A 44 NSLTYITLANI-NVTD--LT-GIEYAHNIKDLTINNIH--ATNY--N-PISGLSNLERLRIMGKD-VTSDKIPN-LSGLT 112 (197)
T ss_dssp HTCCEEEEESS-CCSC--CT-TGGGCTTCSEEEEESCC--CSCC--G-GGTTCTTCCEEEEECTT-CBGGGSCC-CTTCT
T ss_pred CCccEEeccCC-CccC--hH-HHhcCCCCCEEEccCCC--CCcc--h-hhhcCCCCCEEEeECCc-cCcccChh-hcCCC
Confidence 45555555542 2321 11 12345566666666542 2111 1 12346666666666543 33322221 23467
Q ss_pred CCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCC
Q 017279 238 DLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCT 317 (374)
Q Consensus 238 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 317 (374)
+|+.|++++| .+++.....+. .+++|+.|++++|..+++. .. +..+++|++|++++|
T Consensus 113 ~L~~L~Ls~n-~i~~~~~~~l~-~l~~L~~L~L~~n~~i~~~--~~------------------l~~l~~L~~L~l~~n- 169 (197)
T 4ezg_A 113 SLTLLDISHS-AHDDSILTKIN-TLPKVNSIDLSYNGAITDI--MP------------------LKTLPELKSLNIQFD- 169 (197)
T ss_dssp TCCEEECCSS-BCBGGGHHHHT-TCSSCCEEECCSCTBCCCC--GG------------------GGGCSSCCEEECTTB-
T ss_pred CCCEEEecCC-ccCcHhHHHHh-hCCCCCEEEccCCCCcccc--Hh------------------hcCCCCCCEEECCCC-
Confidence 7777777774 45543343333 4777777777776533331 11 223477888888774
Q ss_pred CCCHHHHHHHHhhCCCccCCCCCceEEecCCc
Q 017279 318 ALTPPAVQALCDTFPALHTCSGRHSLVMSGCL 349 (374)
Q Consensus 318 ~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~ 349 (374)
.+++ ++.+..+++|+.|++++++
T Consensus 170 ~i~~---------~~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 170 GVHD---------YRGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CCCC---------CTTGGGCSSCCEEEECBC-
T ss_pred CCcC---------hHHhccCCCCCEEEeeCcc
Confidence 4553 2334667788888887764
No 69
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.92 E-value=1.1e-11 Score=120.76 Aligned_cols=180 Identities=10% Similarity=0.048 Sum_probs=103.9
Q ss_pred ccCceeecccccccch---------------HHHHHHhh--cCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCC
Q 017279 79 LGLTHLSLSWCKNNMN---------------NLVLSLAP--KLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSK 141 (374)
Q Consensus 79 ~~l~~L~l~~~~~~~~---------------~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 141 (374)
..+++|+++++..... ..++.... .+++|++|+++ .+.+.......+ ..+++|++|++++
T Consensus 206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~--~n~l~~~~p~~l-~~l~~L~~L~Ls~ 282 (636)
T 4eco_A 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVY--NCPNLTKLPTFL-KALPEMQLINVAC 282 (636)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEE--CCTTCSSCCTTT-TTCSSCCEEECTT
T ss_pred cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEec--CCcCCccChHHH-hcCCCCCEEECcC
Confidence 4588899887764431 01233334 78899999999 333332222222 3478999999999
Q ss_pred CCCCCH-HHHHHHHh-----cCCCCcEEeecCCCCCCHHHHHH--HHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCC
Q 017279 142 SFKLSD-RSLYALAH-----GCPNLTRLNISGCTSFSDHALAY--LCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQL 213 (374)
Q Consensus 142 ~~~~~~-~~~~~l~~-----~~~~L~~L~L~~~~~~~~~~~~~--l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L 213 (374)
+..++. .....+.. .+++|++|+++++ .+. .++. ....+++|++|+++++. +.+. +. ....+++|
T Consensus 283 n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~--~ip~~~~l~~l~~L~~L~L~~N~--l~g~-ip-~~~~l~~L 355 (636)
T 4eco_A 283 NRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLK--TFPVETSLQKMKKLGMLECLYNQ--LEGK-LP-AFGSEIKL 355 (636)
T ss_dssp CTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCS--SCCCHHHHTTCTTCCEEECCSCC--CEEE-CC-CCEEEEEE
T ss_pred CCCCccccchHHHHhhhccccCCCCCEEECCCC-cCC--ccCchhhhccCCCCCEEeCcCCc--Cccc-hh-hhCCCCCC
Confidence 753665 43333432 2489999999875 444 2333 45568899999998754 3311 11 23356777
Q ss_pred CEEeccCCCCCCHHHHHHHHhcCCC-CCeeecCCCCCCCHHHHHHHHhc--CCCCceEecCCCC
Q 017279 214 QSLNLGWCEDVGDVGVMNLAYGCPD-LRSLDLCGCVCITDDSVIALANG--CPHLRSLGLYYCR 274 (374)
Q Consensus 214 ~~L~l~~~~~~~~~~~~~l~~~~~~-L~~L~l~~~~~l~~~~l~~l~~~--~~~L~~L~l~~~~ 274 (374)
+.|+++++. +. .+......+++ |+.|+++++ .++ .+...... +++|+.|+++++.
T Consensus 356 ~~L~L~~N~-l~--~lp~~l~~l~~~L~~L~Ls~N-~l~--~lp~~~~~~~l~~L~~L~Ls~N~ 413 (636)
T 4eco_A 356 ASLNLAYNQ-IT--EIPANFCGFTEQVENLSFAHN-KLK--YIPNIFDAKSVSVMSAIDFSYNE 413 (636)
T ss_dssp SEEECCSSE-EE--ECCTTSEEECTTCCEEECCSS-CCS--SCCSCCCTTCSSCEEEEECCSSC
T ss_pred CEEECCCCc-cc--cccHhhhhhcccCcEEEccCC-cCc--ccchhhhhcccCccCEEECcCCc
Confidence 888877643 22 11111334566 777777774 343 11111111 2367777777664
No 70
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.92 E-value=3.7e-10 Score=107.40 Aligned_cols=102 Identities=19% Similarity=0.095 Sum_probs=51.7
Q ss_pred ccCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCC
Q 017279 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP 158 (374)
Q Consensus 79 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 158 (374)
..+++|+++++.... ..+..+..+++|++|+++ .+.+..-... .+++|++|+++++. ++...+......++
T Consensus 45 ~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls--~N~l~~lp~~----~l~~L~~L~L~~N~-l~~~~~p~~~~~l~ 115 (520)
T 2z7x_B 45 SKLRILIISHNRIQY--LDISVFKFNQELEYLDLS--HNKLVKISCH----PTVNLKHLDLSFNA-FDALPICKEFGNMS 115 (520)
T ss_dssp TTCCEEECCSSCCCE--EEGGGGTTCTTCCEEECC--SSCCCEEECC----CCCCCSEEECCSSC-CSSCCCCGGGGGCT
T ss_pred ccccEEecCCCccCC--cChHHhhcccCCCEEecC--CCceeecCcc----ccCCccEEeccCCc-cccccchhhhccCC
Confidence 346777776654321 112234466777777777 3344321111 36677777777752 22211111123367
Q ss_pred CCcEEeecCCCCCCHHHHHHHHhcCCCC--cEEEcCCC
Q 017279 159 NLTRLNISGCTSFSDHALAYLCGFCRKL--KILNLCGC 194 (374)
Q Consensus 159 ~L~~L~L~~~~~~~~~~~~~l~~~~~~L--~~L~L~~~ 194 (374)
+|++|+++++ .+.... ...+++| ++|+++++
T Consensus 116 ~L~~L~L~~n-~l~~~~----~~~l~~L~L~~L~l~~n 148 (520)
T 2z7x_B 116 QLKFLGLSTT-HLEKSS----VLPIAHLNISKVLLVLG 148 (520)
T ss_dssp TCCEEEEEES-SCCGGG----GGGGTTSCEEEEEEEEC
T ss_pred cceEEEecCc-ccchhh----ccccccceeeEEEeecc
Confidence 7777777763 444322 2235556 77777654
No 71
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.91 E-value=2.3e-11 Score=108.78 Aligned_cols=221 Identities=17% Similarity=0.139 Sum_probs=129.9
Q ss_pred CCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcC
Q 017279 104 LTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFC 183 (374)
Q Consensus 104 ~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~ 183 (374)
.++++.|+++ .+.++......+ ..+++|++|+++++ .++......+ ..+++|++|+++++ .+... + ....
T Consensus 51 ~~~l~~L~L~--~n~i~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~Ls~n-~l~~l--~--~~~~ 120 (330)
T 1xku_A 51 PPDTALLDLQ--NNKITEIKDGDF-KNLKNLHTLILINN-KISKISPGAF-APLVKLERLYLSKN-QLKEL--P--EKMP 120 (330)
T ss_dssp CTTCCEEECC--SSCCCCBCTTTT-TTCTTCCEEECCSS-CCCCBCTTTT-TTCTTCCEEECCSS-CCSBC--C--SSCC
T ss_pred CCCCeEEECC--CCcCCEeChhhh-ccCCCCCEEECCCC-cCCeeCHHHh-cCCCCCCEEECCCC-cCCcc--C--hhhc
Confidence 3689999998 444543222222 34899999999986 3432211222 34799999999984 44321 1 1124
Q ss_pred CCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHH-HHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcC
Q 017279 184 RKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVG-VMNLAYGCPDLRSLDLCGCVCITDDSVIALANGC 262 (374)
Q Consensus 184 ~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~-~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~ 262 (374)
++|++|+++++. +.... ......+++|+.|+++++. +...+ .......+++|+.|+++++ .++. +.. ...
T Consensus 121 ~~L~~L~l~~n~--l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~--l~~--~~~ 191 (330)
T 1xku_A 121 KTLQELRVHENE--ITKVR-KSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADT-NITT--IPQ--GLP 191 (330)
T ss_dssp TTCCEEECCSSC--CCBBC-HHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSS-CCCS--CCS--SCC
T ss_pred ccccEEECCCCc--ccccC-HhHhcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCC-cccc--CCc--ccc
Confidence 799999999865 33222 2334568999999999864 33211 1223356789999999885 3431 100 013
Q ss_pred CCCceEecCCCCCCCHHHHHHHHhcC-CCCCCcccc-----ccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCC-Ccc
Q 017279 263 PHLRSLGLYYCRNITDRAIYSLAQSG-VKNKPGIWE-----SMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFP-ALH 335 (374)
Q Consensus 263 ~~L~~L~l~~~~~i~~~~~~~l~~~~-~~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~-~l~ 335 (374)
++|+.|+++++. ++......+.... ++......+ ....+..+++|++|+++++ .++ .+| .+.
T Consensus 192 ~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~---------~lp~~l~ 260 (330)
T 1xku_A 192 PSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLV---------KVPGGLA 260 (330)
T ss_dssp TTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCS---------SCCTTTT
T ss_pred ccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC-cCc---------cCChhhc
Confidence 678888888774 4432111121110 000001111 1123567789999999884 555 233 356
Q ss_pred CCCCCceEEecCCccccccc
Q 017279 336 TCSGRHSLVMSGCLNLTSVH 355 (374)
Q Consensus 336 ~~~~L~~L~ls~C~~l~~~~ 355 (374)
.+++|+.|++++|. ++...
T Consensus 261 ~l~~L~~L~l~~N~-i~~~~ 279 (330)
T 1xku_A 261 DHKYIQVVYLHNNN-ISAIG 279 (330)
T ss_dssp TCSSCCEEECCSSC-CCCCC
T ss_pred cCCCcCEEECCCCc-CCccC
Confidence 78999999999984 66554
No 72
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.91 E-value=2.9e-10 Score=106.13 Aligned_cols=159 Identities=17% Similarity=0.073 Sum_probs=80.8
Q ss_pred cCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCC
Q 017279 80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPN 159 (374)
Q Consensus 80 ~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 159 (374)
.+++|+++++...... ...+++|+.|+++ .+.++... ...+++|++|+++++ .++.. . ...+++
T Consensus 86 ~L~~L~Ls~N~l~~~~-----~~~l~~L~~L~L~--~N~l~~l~----~~~l~~L~~L~l~~N-~l~~l---~-l~~l~~ 149 (457)
T 3bz5_A 86 NLTYLACDSNKLTNLD-----VTPLTKLTYLNCD--TNKLTKLD----VSQNPLLTYLNCARN-TLTEI---D-VSHNTQ 149 (457)
T ss_dssp TCSEEECCSSCCSCCC-----CTTCTTCCEEECC--SSCCSCCC----CTTCTTCCEEECTTS-CCSCC---C-CTTCTT
T ss_pred CCCEEECcCCCCceee-----cCCCCcCCEEECC--CCcCCeec----CCCCCcCCEEECCCC-cccee---c-cccCCc
Confidence 3556666554432211 3355666666666 23333211 133556666666654 22221 1 223566
Q ss_pred CcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCC
Q 017279 160 LTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDL 239 (374)
Q Consensus 160 L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 239 (374)
|++|+++++..+.... ...+++|++|+++++. +..- . ...+++|+.|+++++. ++... ...+++|
T Consensus 150 L~~L~l~~n~~~~~~~----~~~l~~L~~L~ls~n~--l~~l--~--l~~l~~L~~L~l~~N~-l~~~~----l~~l~~L 214 (457)
T 3bz5_A 150 LTELDCHLNKKITKLD----VTPQTQLTTLDCSFNK--ITEL--D--VSQNKLLNRLNCDTNN-ITKLD----LNQNIQL 214 (457)
T ss_dssp CCEEECTTCSCCCCCC----CTTCTTCCEEECCSSC--CCCC--C--CTTCTTCCEEECCSSC-CSCCC----CTTCTTC
T ss_pred CCEEECCCCCcccccc----cccCCcCCEEECCCCc--ccee--c--cccCCCCCEEECcCCc-CCeec----cccCCCC
Confidence 6666666543332211 2245667777776643 2221 1 3356677777776643 33321 3356777
Q ss_pred CeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCC
Q 017279 240 RSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCR 274 (374)
Q Consensus 240 ~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~ 274 (374)
+.|+++++ .++. +. ...+++|+.|+++++.
T Consensus 215 ~~L~Ls~N-~l~~--ip--~~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 215 TFLDCSSN-KLTE--ID--VTPLTQLTYFDCSVNP 244 (457)
T ss_dssp SEEECCSS-CCSC--CC--CTTCTTCSEEECCSSC
T ss_pred CEEECcCC-cccc--cC--ccccCCCCEEEeeCCc
Confidence 77777774 3443 22 2346777777777764
No 73
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.90 E-value=1.1e-11 Score=120.60 Aligned_cols=228 Identities=17% Similarity=0.150 Sum_probs=132.1
Q ss_pred HhhcCCCCcEEEeeCCCCCCChH-----------------HHHHHH-HhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCc
Q 017279 100 LAPKLTKLQTLVLRQDKPQLEDN-----------------AVEAIA-NSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLT 161 (374)
Q Consensus 100 ~~~~~~~L~~L~l~~~~~~~~~~-----------------~~~~l~-~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 161 (374)
.+..+++|+.|+++ .+.++.. ....+. ..+++|++|+++++.... .....+ ..+++|+
T Consensus 201 ~l~~l~~L~~L~Ls--~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~-~~p~~l-~~l~~L~ 276 (636)
T 4eco_A 201 AVMRLTKLRQFYMG--NSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT-KLPTFL-KALPEMQ 276 (636)
T ss_dssp GGGGCTTCCEEEEE--SCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS-SCCTTT-TTCSSCC
T ss_pred HHhcccCCCEEECc--CCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc-cChHHH-hcCCCCC
Confidence 35578899999999 4456552 222221 157899999999874322 111222 3478999
Q ss_pred EEeecCCCCCCHHHHHHHHhc------CCCCcEEEcCCCccCccHHHHHH--HHhcCCCCCEEeccCCCCCCHHHHHHHH
Q 017279 162 RLNISGCTSFSDHALAYLCGF------CRKLKILNLCGCVKAATDYALQA--IGRNCNQLQSLNLGWCEDVGDVGVMNLA 233 (374)
Q Consensus 162 ~L~L~~~~~~~~~~~~~l~~~------~~~L~~L~L~~~~~~~~~~~~~~--l~~~~~~L~~L~l~~~~~~~~~~~~~l~ 233 (374)
+|+++++..++...++..... +++|++|+++++. +. .+.. ....+++|+.|+++++. +.+. +. ..
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~--l~--~ip~~~~l~~l~~L~~L~L~~N~-l~g~-ip-~~ 349 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN--LK--TFPVETSLQKMKKLGMLECLYNQ-LEGK-LP-AF 349 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC--CS--SCCCHHHHTTCTTCCEEECCSCC-CEEE-CC-CC
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc--CC--ccCchhhhccCCCCCEEeCcCCc-Cccc-hh-hh
Confidence 999998643665233333333 4899999999865 33 3333 45568899999998864 3311 11 23
Q ss_pred hcCCCCCeeecCCCCCCCHHHHHHHHhcCCC-CceEecCCCCCCCHHHHHHHHhcC---CCCCCcccccc-----cccc-
Q 017279 234 YGCPDLRSLDLCGCVCITDDSVIALANGCPH-LRSLGLYYCRNITDRAIYSLAQSG---VKNKPGIWESM-----KGRY- 303 (374)
Q Consensus 234 ~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~-L~~L~l~~~~~i~~~~~~~l~~~~---~~~~~~~~~~~-----~~~~- 303 (374)
..+++|+.|++++| .++ .+..-...+++ |+.|+++++. ++. ....+.... .+......+.. ..+.
T Consensus 350 ~~l~~L~~L~L~~N-~l~--~lp~~l~~l~~~L~~L~Ls~N~-l~~-lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 424 (636)
T 4eco_A 350 GSEIKLASLNLAYN-QIT--EIPANFCGFTEQVENLSFAHNK-LKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP 424 (636)
T ss_dssp EEEEEESEEECCSS-EEE--ECCTTSEEECTTCCEEECCSSC-CSS-CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCT
T ss_pred CCCCCCCEEECCCC-ccc--cccHhhhhhcccCcEEEccCCc-Ccc-cchhhhhcccCccCEEECcCCcCCCcchhhhcc
Confidence 45688999999985 444 22112334777 9999999885 442 000000000 00000011111 1233
Q ss_pred ------CCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCcccc
Q 017279 304 ------DEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLT 352 (374)
Q Consensus 304 ------~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~ 352 (374)
.+++|+.|+++++ .++.. ...+ ...+++|+.|++++|. ++
T Consensus 425 ~~~~~~~~~~L~~L~Ls~N-~l~~l-p~~~------~~~l~~L~~L~Ls~N~-l~ 470 (636)
T 4eco_A 425 LDPTPFKGINVSSINLSNN-QISKF-PKEL------FSTGSPLSSINLMGNM-LT 470 (636)
T ss_dssp TCSSCCCCCCEEEEECCSS-CCCSC-CTHH------HHTTCCCSEEECCSSC-CS
T ss_pred cccccccCCCCCEEECcCC-ccCcC-CHHH------HccCCCCCEEECCCCC-CC
Confidence 5668888888884 55521 1111 1357888999999885 54
No 74
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.88 E-value=3.7e-11 Score=119.86 Aligned_cols=163 Identities=18% Similarity=0.125 Sum_probs=107.3
Q ss_pred HHhhcCCCCcEEEeeCCCCCCChH-----------------HHHHH-HHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q 017279 99 SLAPKLTKLQTLVLRQDKPQLEDN-----------------AVEAI-ANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNL 160 (374)
Q Consensus 99 ~~~~~~~~L~~L~l~~~~~~~~~~-----------------~~~~l-~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 160 (374)
..+..+++|+.|+++ .+.++.. ....+ ...+++|++|+++++.... .....+ ..+++|
T Consensus 442 ~~l~~L~~L~~L~Ls--~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~-~iP~~l-~~L~~L 517 (876)
T 4ecn_A 442 KAIQRLTKLQIIYFA--NSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT-QLPDFL-YDLPEL 517 (876)
T ss_dssp GGGGGCTTCCEEEEE--SCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCC-SCCGGG-GGCSSC
T ss_pred HHHhcCCCCCEEECc--CCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCc-cChHHH-hCCCCC
Confidence 346688999999999 5556651 22222 1258899999999874332 212223 458999
Q ss_pred cEEeecCCCCCCHHHHHHHH-------hcCCCCcEEEcCCCccCccHHHHHH--HHhcCCCCCEEeccCCCCCCHHHHHH
Q 017279 161 TRLNISGCTSFSDHALAYLC-------GFCRKLKILNLCGCVKAATDYALQA--IGRNCNQLQSLNLGWCEDVGDVGVMN 231 (374)
Q Consensus 161 ~~L~L~~~~~~~~~~~~~l~-------~~~~~L~~L~L~~~~~~~~~~~~~~--l~~~~~~L~~L~l~~~~~~~~~~~~~ 231 (374)
+.|+++++..++...++.-. ..+++|++|+++++. +. .++. ....+++|+.|+++++. +.. +.
T Consensus 518 ~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~--L~--~ip~~~~l~~L~~L~~L~Ls~N~-l~~--lp- 589 (876)
T 4ecn_A 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN--LE--EFPASASLQKMVKLGLLDCVHNK-VRH--LE- 589 (876)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC--CC--BCCCHHHHTTCTTCCEEECTTSC-CCB--CC-
T ss_pred CEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc--CC--ccCChhhhhcCCCCCEEECCCCC-ccc--ch-
Confidence 99999986436652233222 245699999999865 33 3333 45578999999999864 442 22
Q ss_pred HHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCC-CceEecCCCCCCC
Q 017279 232 LAYGCPDLRSLDLCGCVCITDDSVIALANGCPH-LRSLGLYYCRNIT 277 (374)
Q Consensus 232 l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~-L~~L~l~~~~~i~ 277 (374)
....+++|+.|++++| .++ .+..-...+++ |+.|+++++. ++
T Consensus 590 ~~~~L~~L~~L~Ls~N-~l~--~lp~~l~~l~~~L~~L~Ls~N~-L~ 632 (876)
T 4ecn_A 590 AFGTNVKLTDLKLDYN-QIE--EIPEDFCAFTDQVEGLGFSHNK-LK 632 (876)
T ss_dssp CCCTTSEESEEECCSS-CCS--CCCTTSCEECTTCCEEECCSSC-CC
T ss_pred hhcCCCcceEEECcCC-ccc--cchHHHhhccccCCEEECcCCC-CC
Confidence 3456789999999995 454 22222334777 9999999885 44
No 75
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.88 E-value=1.6e-09 Score=104.24 Aligned_cols=145 Identities=23% Similarity=0.225 Sum_probs=62.5
Q ss_pred cCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhc
Q 017279 103 KLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGF 182 (374)
Q Consensus 103 ~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~ 182 (374)
.+++|+.|+++ .+.+... ..+ ..+++|+.|+|+++. +.... . ...+++|+.|+|+++ .+.. ++ ....
T Consensus 41 ~L~~L~~L~l~--~n~i~~l--~~l-~~l~~L~~L~Ls~N~-l~~~~--~-l~~l~~L~~L~Ls~N-~l~~--l~-~l~~ 107 (605)
T 1m9s_A 41 ELNSIDQIIAN--NSDIKSV--QGI-QYLPNVTKLFLNGNK-LTDIK--P-LTNLKNLGWLFLDEN-KIKD--LS-SLKD 107 (605)
T ss_dssp HHTTCCCCBCT--TCCCCCC--TTG-GGCTTCCEEECTTSC-CCCCG--G-GGGCTTCCEEECCSS-CCCC--CT-TSTT
T ss_pred cCCCCCEEECc--CCCCCCC--hHH-ccCCCCCEEEeeCCC-CCCCh--h-hccCCCCCEEECcCC-CCCC--Ch-hhcc
Confidence 34556666666 2223221 111 335666666666652 22211 1 233566666666653 2222 11 1233
Q ss_pred CCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcC
Q 017279 183 CRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGC 262 (374)
Q Consensus 183 ~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~ 262 (374)
+++|++|+|+++. +.. +.. ...+++|+.|+|+++. +.+. .....+++|+.|++++| .++.... ...+
T Consensus 108 l~~L~~L~Ls~N~--l~~--l~~-l~~l~~L~~L~Ls~N~-l~~l---~~l~~l~~L~~L~Ls~N-~l~~~~~---l~~l 174 (605)
T 1m9s_A 108 LKKLKSLSLEHNG--ISD--ING-LVHLPQLESLYLGNNK-ITDI---TVLSRLTKLDTLSLEDN-QISDIVP---LAGL 174 (605)
T ss_dssp CTTCCEEECTTSC--CCC--CGG-GGGCTTCSEEECCSSC-CCCC---GGGGSCTTCSEEECCSS-CCCCCGG---GTTC
T ss_pred CCCCCEEEecCCC--CCC--Ccc-ccCCCccCEEECCCCc-cCCc---hhhcccCCCCEEECcCC-cCCCchh---hccC
Confidence 5556666665543 221 111 2245555555555532 2221 12234455555555553 2321111 2234
Q ss_pred CCCceEecCCC
Q 017279 263 PHLRSLGLYYC 273 (374)
Q Consensus 263 ~~L~~L~l~~~ 273 (374)
++|+.|+|++|
T Consensus 175 ~~L~~L~Ls~N 185 (605)
T 1m9s_A 175 TKLQNLYLSKN 185 (605)
T ss_dssp TTCCEEECCSS
T ss_pred CCCCEEECcCC
Confidence 55555555554
No 76
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.87 E-value=2.4e-11 Score=119.43 Aligned_cols=42 Identities=17% Similarity=0.084 Sum_probs=27.4
Q ss_pred ccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCcc
Q 017279 302 RYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLN 350 (374)
Q Consensus 302 ~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~ 350 (374)
+..+++|+.|++++ +.++......+. ..+++|+.|++++++-
T Consensus 580 ~~~l~~L~~L~L~~-N~l~~~~~~~~~------~~~~~L~~l~l~~N~~ 621 (680)
T 1ziw_A 580 FNNQVSLKSLNLQK-NLITSVEKKVFG------PAFRNLTELDMRFNPF 621 (680)
T ss_dssp TTTCTTCCEEECTT-SCCCBCCHHHHH------HHHTTCSEEECTTCCC
T ss_pred hCCCCCCCEEECCC-CcCCccChhHhc------ccccccCEEEccCCCc
Confidence 34668899999988 456543222221 1357889999998764
No 77
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.86 E-value=1.3e-10 Score=114.34 Aligned_cols=40 Identities=10% Similarity=-0.091 Sum_probs=22.5
Q ss_pred ccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCc
Q 017279 302 RYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCL 349 (374)
Q Consensus 302 ~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~ 349 (374)
+..+++|++|+++++ .++... -..+..+++|+.|++++|.
T Consensus 268 ~~~l~~L~~L~L~~n-~l~~~~-------~~~~~~l~~L~~L~L~~~~ 307 (680)
T 1ziw_A 268 FAWLPQLEYFFLEYN-NIQHLF-------SHSLHGLFNVRYLNLKRSF 307 (680)
T ss_dssp TTTCTTCCEEECCSC-CBSEEC-------TTTTTTCTTCCEEECTTCB
T ss_pred ccCcccccEeeCCCC-ccCccC-------hhhhcCCCCccEEeccchh
Confidence 556667777777663 333210 0124566777777777653
No 78
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.85 E-value=2.1e-11 Score=106.08 Aligned_cols=203 Identities=18% Similarity=0.135 Sum_probs=99.1
Q ss_pred CCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCC
Q 017279 105 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCR 184 (374)
Q Consensus 105 ~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~ 184 (374)
++++.|+++ .+.+.......+ ..+++|++|+++++ .++......+ ..+++|++|+++++ .+..... .....++
T Consensus 28 ~~l~~L~ls--~n~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~ 100 (276)
T 2z62_A 28 FSTKNLDLS--FNPLRHLGSYSF-FSFPELQVLDLSRC-EIQTIEDGAY-QSLSHLSTLILTGN-PIQSLAL-GAFSGLS 100 (276)
T ss_dssp TTCCEEECT--TCCCCEECTTTT-TTCTTCSEEECTTC-CCCEECTTTT-TTCTTCCEEECTTC-CCCEECT-TTTTTCT
T ss_pred CCccEEECC--CCcccccCHhHh-ccccCCcEEECCCC-cCCccCHHHc-cCCcCCCEEECCCC-ccCccCh-hhhcCCc
Confidence 356677776 333332211111 23567777777765 2322111111 23567777777763 3322111 1123467
Q ss_pred CCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCH---HHHHHHHhc
Q 017279 185 KLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITD---DSVIALANG 261 (374)
Q Consensus 185 ~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~---~~l~~l~~~ 261 (374)
+|++|+++++. +.... ......+++|++|+++++. +....+......+++|++|++++| .++. ..+..+. .
T Consensus 101 ~L~~L~l~~n~--l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~-~ 174 (276)
T 2z62_A 101 SLQKLVAVETN--LASLE-NFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLH-Q 174 (276)
T ss_dssp TCCEEECTTSC--CCCST-TCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHH-T
T ss_pred cccEEECCCCC--ccccC-chhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCC-CCCcCCHHHhhhhh-h
Confidence 77777776643 21110 0013346777777777643 332111223345677777777774 3332 2233222 2
Q ss_pred CCCCc-eEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCC
Q 017279 262 CPHLR-SLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGR 340 (374)
Q Consensus 262 ~~~L~-~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L 340 (374)
++.|. .|+++++. ++... .+.....+|++|+++++ .++.... ..+..+++|
T Consensus 175 L~~l~l~L~ls~n~-l~~~~-------------------~~~~~~~~L~~L~L~~n-~l~~~~~-------~~~~~l~~L 226 (276)
T 2z62_A 175 MPLLNLSLDLSLNP-MNFIQ-------------------PGAFKEIRLKELALDTN-QLKSVPD-------GIFDRLTSL 226 (276)
T ss_dssp CTTCCEEEECCSSC-CCEEC-------------------TTSSCSCCEEEEECCSS-CCSCCCT-------TTTTTCCSC
T ss_pred ccccceeeecCCCc-ccccC-------------------ccccCCCcccEEECCCC-ceeecCH-------hHhcccccc
Confidence 33333 67776664 33200 01112347888888874 4552110 123567888
Q ss_pred ceEEecCC
Q 017279 341 HSLVMSGC 348 (374)
Q Consensus 341 ~~L~ls~C 348 (374)
+.|+++++
T Consensus 227 ~~L~l~~N 234 (276)
T 2z62_A 227 QKIWLHTN 234 (276)
T ss_dssp CEEECCSS
T ss_pred cEEEccCC
Confidence 88888844
No 79
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.85 E-value=2.4e-07 Score=75.07 Aligned_cols=126 Identities=18% Similarity=0.218 Sum_probs=72.5
Q ss_pred HHHHHhcCCCCcEEeecCCCCCCHHHHHHHH---hcCCCCcEEEcCCCccCccHHHHHHH---HhcCCCCCEEeccCCCC
Q 017279 150 LYALAHGCPNLTRLNISGCTSFSDHALAYLC---GFCRKLKILNLCGCVKAATDYALQAI---GRNCNQLQSLNLGWCED 223 (374)
Q Consensus 150 ~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~---~~~~~L~~L~L~~~~~~~~~~~~~~l---~~~~~~L~~L~l~~~~~ 223 (374)
+..+...+++|++|+|+++..+.+.++..+. ...++|++|+|+++. +.+.....+ ....++|++|+++++ .
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~--i~~~g~~~l~~~L~~n~~L~~L~L~~N-~ 104 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR--SNDPVAFALAEMLKVNNTLKSLNVESN-F 104 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC--CCHHHHHHHHHHHHHCSSCCEEECCSS-C
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC--CChHHHHHHHHHHHhCCCcCEEECcCC-c
Confidence 4444444566666666653355555544332 234567777776644 555544333 234566777777764 3
Q ss_pred CCHHHHHHHHh---cCCCCCeeec--CCCCCCCHHHHHHHHh---cCCCCceEecCCCCCCCHHH
Q 017279 224 VGDVGVMNLAY---GCPDLRSLDL--CGCVCITDDSVIALAN---GCPHLRSLGLYYCRNITDRA 280 (374)
Q Consensus 224 ~~~~~~~~l~~---~~~~L~~L~l--~~~~~l~~~~l~~l~~---~~~~L~~L~l~~~~~i~~~~ 280 (374)
+++.+...+.. ..++|++|++ ++ +.+++++...+.+ ..+.|++|+++++. +.+.+
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~-i~~~~ 167 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFTQ-QGPRL 167 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCSS-HHHHH
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCCC-CChHH
Confidence 66666555543 3467777777 55 4677766544433 35678888877774 65554
No 80
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.85 E-value=1.7e-10 Score=108.59 Aligned_cols=201 Identities=17% Similarity=0.127 Sum_probs=133.4
Q ss_pred HHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHH
Q 017279 99 SLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAY 178 (374)
Q Consensus 99 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~ 178 (374)
.+...+++|+.|+++ .+.+.......+ ..+++|++|+++++. ++.... ...+++|++|+++++ .++..
T Consensus 28 ~l~~~~~~L~~L~Ls--~n~l~~~~~~~~-~~l~~L~~L~Ls~N~-l~~~~~---l~~l~~L~~L~Ls~N-~l~~l---- 95 (487)
T 3oja_A 28 SLRQSAWNVKELDLS--GNPLSQISAADL-APFTKLELLNLSSNV-LYETLD---LESLSTLRTLDLNNN-YVQEL---- 95 (487)
T ss_dssp TTSTTGGGCCEEECC--SSCCCCCCGGGG-TTCTTCCEEECTTSC-CEEEEE---CTTCTTCCEEECCSS-EEEEE----
T ss_pred HhcccCCCccEEEee--CCcCCCCCHHHH-hCCCCCCEEEeeCCC-CCCCcc---cccCCCCCEEEecCC-cCCCC----
Confidence 344455689999999 445544322222 458999999999973 332111 345899999999985 44321
Q ss_pred HHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHH
Q 017279 179 LCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIAL 258 (374)
Q Consensus 179 l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l 258 (374)
...++|++|+++++. +.... ...+++|+.|+++++. ++... ......+++|+.|++++| .++......+
T Consensus 96 --~~~~~L~~L~L~~N~--l~~~~----~~~l~~L~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l 164 (487)
T 3oja_A 96 --LVGPSIETLHAANNN--ISRVS----CSRGQGKKNIYLANNK-ITMLR-DLDEGCRSRVQYLDLKLN-EIDTVNFAEL 164 (487)
T ss_dssp --EECTTCCEEECCSSC--CCCEE----ECCCSSCEEEECCSSC-CCSGG-GBCGGGGSSEEEEECTTS-CCCEEEGGGG
T ss_pred --CCCCCcCEEECcCCc--CCCCC----ccccCCCCEEECCCCC-CCCCC-chhhcCCCCCCEEECCCC-CCCCcChHHH
Confidence 135899999999865 33221 1246899999999864 44321 112245799999999995 5654334445
Q ss_pred HhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCC
Q 017279 259 ANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCS 338 (374)
Q Consensus 259 ~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~ 338 (374)
...+++|+.|++++|. ++.. .+...+++|+.|++++ +.++. .-+.+..++
T Consensus 165 ~~~l~~L~~L~Ls~N~-l~~~--------------------~~~~~l~~L~~L~Ls~-N~l~~--------~~~~~~~l~ 214 (487)
T 3oja_A 165 AASSDTLEHLNLQYNF-IYDV--------------------KGQVVFAKLKTLDLSS-NKLAF--------MGPEFQSAA 214 (487)
T ss_dssp GGGTTTCCEEECTTSC-CCEE--------------------ECCCCCTTCCEEECCS-SCCCE--------ECGGGGGGT
T ss_pred hhhCCcccEEecCCCc-cccc--------------------cccccCCCCCEEECCC-CCCCC--------CCHhHcCCC
Confidence 4458999999999986 5431 1112468999999999 46763 112356789
Q ss_pred CCceEEecCCccccc
Q 017279 339 GRHSLVMSGCLNLTS 353 (374)
Q Consensus 339 ~L~~L~ls~C~~l~~ 353 (374)
+|+.|++++|. ++.
T Consensus 215 ~L~~L~Ls~N~-l~~ 228 (487)
T 3oja_A 215 GVTWISLRNNK-LVL 228 (487)
T ss_dssp TCSEEECTTSC-CCE
T ss_pred CccEEEecCCc-Ccc
Confidence 99999999985 553
No 81
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.84 E-value=6.7e-11 Score=105.80 Aligned_cols=45 Identities=13% Similarity=0.056 Sum_probs=21.9
Q ss_pred cCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCc
Q 017279 303 YDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCL 349 (374)
Q Consensus 303 ~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~ 349 (374)
..+++|++|++++ +.++......+.. .......++|+.|++++++
T Consensus 261 ~~l~~L~~L~l~~-N~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 261 PDLKLLQVVYLHT-NNITKVGVNDFCP-VGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp GGCTTCCEEECCS-SCCCBCCTTSSSC-SSCCSSSCCBSEEECCSSS
T ss_pred hcCccCCEEECCC-CCCCccChhHccc-cccccccccccceEeecCc
Confidence 3456777777776 3454322221110 0001124566777777765
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.82 E-value=9.2e-10 Score=95.47 Aligned_cols=194 Identities=18% Similarity=0.156 Sum_probs=111.9
Q ss_pred cCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhc
Q 017279 103 KLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGF 182 (374)
Q Consensus 103 ~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~ 182 (374)
.+++++.|.+. ...+... ..+ ..+++|++|+++++. +.. +..+ ..+++|++|+++++ .+.... ......
T Consensus 39 ~l~~L~~L~l~--~~~i~~~--~~l-~~l~~L~~L~l~~n~-l~~--~~~l-~~l~~L~~L~L~~n-~l~~~~-~~~~~~ 107 (272)
T 3rfs_A 39 ELNSIDQIIAN--NSDIKSV--QGI-QYLPNVRYLALGGNK-LHD--ISAL-KELTNLTYLILTGN-QLQSLP-NGVFDK 107 (272)
T ss_dssp HHTTCCEEECT--TSCCCCC--TTG-GGCTTCCEEECTTSC-CCC--CGGG-TTCTTCCEEECTTS-CCCCCC-TTTTTT
T ss_pred cccceeeeeeC--CCCcccc--ccc-ccCCCCcEEECCCCC-CCC--chhh-cCCCCCCEEECCCC-ccCccC-hhHhcC
Confidence 45788888888 3333321 112 347888999988863 333 1222 34788888888874 343211 112345
Q ss_pred CCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcC
Q 017279 183 CRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGC 262 (374)
Q Consensus 183 ~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~ 262 (374)
+++|++|+++++. +... .......+++|++|+++++. ++... ......+++|+.|++++| .++... ......+
T Consensus 108 l~~L~~L~L~~n~--l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l 180 (272)
T 3rfs_A 108 LTNLKELVLVENQ--LQSL-PDGVFDKLTNLTYLNLAHNQ-LQSLP-KGVFDKLTNLTELDLSYN-QLQSLP-EGVFDKL 180 (272)
T ss_dssp CTTCCEEECTTSC--CCCC-CTTTTTTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTC
T ss_pred CcCCCEEECCCCc--CCcc-CHHHhccCCCCCEEECCCCc-cCccC-HHHhccCccCCEEECCCC-CcCccC-HHHhcCC
Confidence 7888888888754 3211 11223457888888888753 33211 122345788888888885 444211 1222347
Q ss_pred CCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCce
Q 017279 263 PHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHS 342 (374)
Q Consensus 263 ~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~ 342 (374)
++|+.|++++|. ++..... .+..+++|+.|+++++ .+. ..||+|+.
T Consensus 181 ~~L~~L~L~~N~-l~~~~~~------------------~~~~l~~L~~L~l~~N-~~~--------------~~~~~l~~ 226 (272)
T 3rfs_A 181 TQLKDLRLYQNQ-LKSVPDG------------------VFDRLTSLQYIWLHDN-PWD--------------CTCPGIRY 226 (272)
T ss_dssp TTCCEEECCSSC-CSCCCTT------------------TTTTCTTCCEEECCSS-CBC--------------CCTTTTHH
T ss_pred ccCCEEECCCCc-CCccCHH------------------HHhCCcCCCEEEccCC-Ccc--------------ccCcHHHH
Confidence 888888888774 4321110 1234578888888874 232 45777777
Q ss_pred EEecCC
Q 017279 343 LVMSGC 348 (374)
Q Consensus 343 L~ls~C 348 (374)
|+++++
T Consensus 227 l~~~~n 232 (272)
T 3rfs_A 227 LSEWIN 232 (272)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766654
No 83
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.80 E-value=1.2e-09 Score=89.91 Aligned_cols=142 Identities=18% Similarity=0.153 Sum_probs=99.9
Q ss_pred cCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhc
Q 017279 182 FCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANG 261 (374)
Q Consensus 182 ~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~ 261 (374)
.+++|++|+++++. +.. +.. ...+++|++|+++++. +.+. . ....+++|++|++++| .++......+. .
T Consensus 42 ~l~~L~~L~l~~n~--i~~--l~~-l~~l~~L~~L~l~~n~-~~~~--~-~l~~l~~L~~L~l~~n-~l~~~~~~~l~-~ 110 (197)
T 4ezg_A 42 QMNSLTYITLANIN--VTD--LTG-IEYAHNIKDLTINNIH-ATNY--N-PISGLSNLERLRIMGK-DVTSDKIPNLS-G 110 (197)
T ss_dssp HHHTCCEEEEESSC--CSC--CTT-GGGCTTCSEEEEESCC-CSCC--G-GGTTCTTCCEEEEECT-TCBGGGSCCCT-T
T ss_pred hcCCccEEeccCCC--ccC--hHH-HhcCCCCCEEEccCCC-CCcc--h-hhhcCCCCCEEEeECC-ccCcccChhhc-C
Confidence 36789999999865 332 122 4568999999999873 4432 2 2446899999999995 56543343343 4
Q ss_pred CCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCc
Q 017279 262 CPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRH 341 (374)
Q Consensus 262 ~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~ 341 (374)
+++|+.|++++|. +++.....+.. +++|++|++++|..+++ ++.+..+++|+
T Consensus 111 l~~L~~L~Ls~n~-i~~~~~~~l~~------------------l~~L~~L~L~~n~~i~~---------~~~l~~l~~L~ 162 (197)
T 4ezg_A 111 LTSLTLLDISHSA-HDDSILTKINT------------------LPKVNSIDLSYNGAITD---------IMPLKTLPELK 162 (197)
T ss_dssp CTTCCEEECCSSB-CBGGGHHHHTT------------------CSSCCEEECCSCTBCCC---------CGGGGGCSSCC
T ss_pred CCCCCEEEecCCc-cCcHhHHHHhh------------------CCCCCEEEccCCCCccc---------cHhhcCCCCCC
Confidence 8999999999985 77655555554 38999999999653653 34457889999
Q ss_pred eEEecCCcccccccceecCccc
Q 017279 342 SLVMSGCLNLTSVHCVCAGQSH 363 (374)
Q Consensus 342 ~L~ls~C~~l~~~~~~~~~~~~ 363 (374)
.|++++|. +++......+.++
T Consensus 163 ~L~l~~n~-i~~~~~l~~l~~L 183 (197)
T 4ezg_A 163 SLNIQFDG-VHDYRGIEDFPKL 183 (197)
T ss_dssp EEECTTBC-CCCCTTGGGCSSC
T ss_pred EEECCCCC-CcChHHhccCCCC
Confidence 99999995 6665433333333
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.78 E-value=1.4e-10 Score=100.66 Aligned_cols=14 Identities=0% Similarity=-0.026 Sum_probs=6.9
Q ss_pred cCCCCCceEEecCC
Q 017279 335 HTCSGRHSLVMSGC 348 (374)
Q Consensus 335 ~~~~~L~~L~ls~C 348 (374)
..+++|+.|++++|
T Consensus 202 ~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 202 DRLTSLQYIWLHDN 215 (272)
T ss_dssp TTCTTCCEEECCSS
T ss_pred hCCcCCCEEEccCC
Confidence 34455555555544
No 85
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.78 E-value=2.6e-11 Score=121.96 Aligned_cols=14 Identities=0% Similarity=-0.240 Sum_probs=8.7
Q ss_pred cCCCCCceEEecCC
Q 017279 335 HTCSGRHSLVMSGC 348 (374)
Q Consensus 335 ~~~~~L~~L~ls~C 348 (374)
..+++|+.|++++|
T Consensus 335 ~~l~~L~~L~L~~N 348 (844)
T 3j0a_A 335 YGLPKVAYIDLQKN 348 (844)
T ss_dssp SSCTTCCEEECCSC
T ss_pred cCCCCCCEEECCCC
Confidence 45566666666665
No 86
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.77 E-value=5.2e-09 Score=65.80 Aligned_cols=41 Identities=34% Similarity=0.595 Sum_probs=35.0
Q ss_pred cCCccCCCCHHHHHHHhcCCCccchhhhcccchhHHHhhhc
Q 017279 39 VITEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICL 79 (374)
Q Consensus 39 ~~~~~~~Lp~eil~~If~~L~~~~l~~~~~vc~~w~~~~~~ 79 (374)
....|..||+|++.+||+||+..++.++++|||+|+.++..
T Consensus 5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~ 45 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASD 45 (53)
T ss_dssp ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTC
T ss_pred CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Confidence 35689999999999999999999999999999999988753
No 87
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.76 E-value=1.4e-11 Score=118.56 Aligned_cols=185 Identities=19% Similarity=0.107 Sum_probs=91.8
Q ss_pred CCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHH-HHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhc
Q 017279 131 CHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHA-LAYLCGFCRKLKILNLCGCVKAATDYALQAIGRN 209 (374)
Q Consensus 131 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~-~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~ 209 (374)
+++|++|++.++........ ..+++|++|+++++ .+.... .......+++|++|+++++. +..... . ...
T Consensus 324 l~~L~~L~l~~n~~~~~~~~----~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~l~~n~--l~~~~~-~-~~~ 394 (570)
T 2z63_A 324 LKSLKRLTFTSNKGGNAFSE----VDLPSLEFLDLSRN-GLSFKGCCSQSDFGTTSLKYLDLSFNG--VITMSS-N-FLG 394 (570)
T ss_dssp CSSCCEEEEESCBSCCBCCC----CBCTTCCEEECCSS-CCBEEEEEEHHHHTCSCCCEEECCSCS--EEEEEE-E-EET
T ss_pred ccccCEEeCcCCcccccccc----ccCCCCCEEeCcCC-ccCccccccccccccCccCEEECCCCc--cccccc-c-ccc
Confidence 45566666655422111000 23566666666653 222110 01112245666666666543 111100 0 234
Q ss_pred CCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCC
Q 017279 210 CNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGV 289 (374)
Q Consensus 210 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~ 289 (374)
+++|++|+++++. +...........+++|+.|++++|. ++... ......+++|+.|++++|. +++.
T Consensus 395 l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~---------- 460 (570)
T 2z63_A 395 LEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTH-TRVAF-NGIFNGLSSLEVLKMAGNS-FQEN---------- 460 (570)
T ss_dssp CTTCCEEECTTSE-EESCTTSCTTTTCTTCCEEECTTSC-CEECC-TTTTTTCTTCCEEECTTCE-EGGG----------
T ss_pred cCCCCEEEccCCc-cccccchhhhhcCCCCCEEeCcCCc-ccccc-hhhhhcCCcCcEEECcCCc-Cccc----------
Confidence 5666666666542 2111011122345667777776643 22111 1122246667777776664 2210
Q ss_pred CCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCcccccc
Q 017279 290 KNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSV 354 (374)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~~~ 354 (374)
..+..+..+++|++|++++| .++... -..+..+++|+.|++++| +++..
T Consensus 461 -------~~p~~~~~l~~L~~L~l~~n-~l~~~~-------~~~~~~l~~L~~L~l~~n-~l~~~ 509 (570)
T 2z63_A 461 -------FLPDIFTELRNLTFLDLSQC-QLEQLS-------PTAFNSLSSLQVLNMASN-QLKSV 509 (570)
T ss_dssp -------EECSCCTTCTTCCEEECTTS-CCCEEC-------TTTTTTCTTCCEEECCSS-CCSCC
T ss_pred -------cchhhhhcccCCCEEECCCC-ccccCC-------hhhhhcccCCCEEeCCCC-cCCCC
Confidence 01123556799999999985 555311 113567899999999999 46554
No 88
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.76 E-value=4.2e-10 Score=97.50 Aligned_cols=155 Identities=17% Similarity=0.134 Sum_probs=67.1
Q ss_pred CCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCC
Q 017279 105 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCR 184 (374)
Q Consensus 105 ~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~ 184 (374)
++++.|+++ .+.+.......+ ..+++|++|+++++ .++.. ...+...+++|++|+++++ .+..... .....++
T Consensus 37 ~~l~~L~l~--~n~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~i-~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~ 109 (270)
T 2o6q_A 37 ADTKKLDLQ--SNKLSSLPSKAF-HRLTKLRLLYLNDN-KLQTL-PAGIFKELKNLETLWVTDN-KLQALPI-GVFDQLV 109 (270)
T ss_dssp TTCSEEECC--SSCCSCCCTTSS-SSCTTCCEEECCSS-CCSCC-CTTTTSSCTTCCEEECCSS-CCCCCCT-TTTTTCS
T ss_pred CCCCEEECc--CCCCCeeCHHHh-cCCCCCCEEECCCC-ccCee-ChhhhcCCCCCCEEECCCC-cCCcCCH-hHccccc
Confidence 467777777 333332111111 23567777777665 22211 0111223566777776653 2221110 1123456
Q ss_pred CCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCC
Q 017279 185 KLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPH 264 (374)
Q Consensus 185 ~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~ 264 (374)
+|++|+++++. +.... ...+..+++|++|+++++. ++... ......+++|+.|+++++ .++.... .....+++
T Consensus 110 ~L~~L~l~~n~--l~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~ 182 (270)
T 2o6q_A 110 NLAELRLDRNQ--LKSLP-PRVFDSLTKLTYLSLGYNE-LQSLP-KGVFDKLTSLKELRLYNN-QLKRVPE-GAFDKLTE 182 (270)
T ss_dssp SCCEEECCSSC--CCCCC-TTTTTTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTT
T ss_pred CCCEEECCCCc--cCeeC-HHHhCcCcCCCEEECCCCc-CCccC-HhHccCCcccceeEecCC-cCcEeCh-hHhccCCC
Confidence 66666666533 21111 1112345666666665542 22111 111234556666666653 2321111 11123455
Q ss_pred CceEecCCC
Q 017279 265 LRSLGLYYC 273 (374)
Q Consensus 265 L~~L~l~~~ 273 (374)
|+.|+++++
T Consensus 183 L~~L~L~~N 191 (270)
T 2o6q_A 183 LKTLKLDNN 191 (270)
T ss_dssp CCEEECCSS
T ss_pred cCEEECCCC
Confidence 666666555
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.75 E-value=1.1e-08 Score=90.44 Aligned_cols=224 Identities=18% Similarity=0.123 Sum_probs=136.3
Q ss_pred CCCCcEEEeeCCCCCCChHHHHHHHH--hCCCCCEEecCCCCCCCHHHHHHHH-hcCCCCcEEeecCCCCCCH----HHH
Q 017279 104 LTKLQTLVLRQDKPQLEDNAVEAIAN--SCHDLQDLDLSKSFKLSDRSLYALA-HGCPNLTRLNISGCTSFSD----HAL 176 (374)
Q Consensus 104 ~~~L~~L~l~~~~~~~~~~~~~~l~~--~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~~L~~L~L~~~~~~~~----~~~ 176 (374)
...++.+.+. ...+++..+..+.. ..++|++|+++++. +.......+. ..+++|++|+++++ .+.. ...
T Consensus 63 ~~~l~~l~l~--~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~ 138 (310)
T 4glp_A 63 ALRVRRLTVG--AAQVPAQLLVGALRVLAYSRLKELTLEDLK-ITGTMPPLPLEATGLALSSLRLRNV-SWATGRSWLAE 138 (310)
T ss_dssp SCCCCEEEEC--SCCCBHHHHHHHHHHHHHSCCCEEEEESCC-CBSCCCCCSSSCCCBCCSSCEEESC-CCSSTTSSHHH
T ss_pred hcceeEEEEe--CCcCCHHHHHHHHHhcccCceeEEEeeCCE-eccchhhhhhhccCCCCCEEEeecc-cccchhhhhHH
Confidence 3457888888 55666655544332 24679999999873 3322222221 44789999999985 4432 111
Q ss_pred HHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHH--HHhcCCCCCeeecCCCCCCC--H
Q 017279 177 AYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMN--LAYGCPDLRSLDLCGCVCIT--D 252 (374)
Q Consensus 177 ~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~--l~~~~~~L~~L~l~~~~~l~--~ 252 (374)
.. ...+++|++|+++++. +.... ......+++|++|+++++.-.....+.. ....+++|++|++++| .++ +
T Consensus 139 ~~-~~~~~~L~~L~Ls~n~--l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~ 213 (310)
T 4glp_A 139 LQ-QWLKPGLKVLSIAQAH--SPAFS-CEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPT 213 (310)
T ss_dssp HH-TTBCSCCCEEEEECCS--SCCCC-TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHH
T ss_pred HH-hhhccCCCEEEeeCCC--cchhh-HHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchH
Confidence 22 2368999999999865 32211 1223468999999999865332222221 1246899999999996 565 2
Q ss_pred HHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCC
Q 017279 253 DSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFP 332 (374)
Q Consensus 253 ~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~ 332 (374)
.....+...+++|++|+++++. +++.....+. .+..+++|++|++++ +.++. +|
T Consensus 214 ~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~~---------------~~~~~~~L~~L~Ls~-N~l~~---------lp 267 (310)
T 4glp_A 214 GVCAALAAAGVQPHSLDLSHNS-LRATVNPSAP---------------RCMWSSALNSLNLSF-AGLEQ---------VP 267 (310)
T ss_dssp HHHHHHHHHTCCCSSEECTTSC-CCCCCCSCCS---------------SCCCCTTCCCEECCS-SCCCS---------CC
T ss_pred HHHHHHHhcCCCCCEEECCCCC-CCccchhhHH---------------hccCcCcCCEEECCC-CCCCc---------hh
Confidence 3333445568999999999985 4431100000 011237999999998 46662 23
Q ss_pred CccCCCCCceEEecCCcccccccceecCcccc
Q 017279 333 ALHTCSGRHSLVMSGCLNLTSVHCVCAGQSHR 364 (374)
Q Consensus 333 ~l~~~~~L~~L~ls~C~~l~~~~~~~~~~~~~ 364 (374)
.- -+++|+.|++++|. ++.......+.+++
T Consensus 268 ~~-~~~~L~~L~Ls~N~-l~~~~~~~~l~~L~ 297 (310)
T 4glp_A 268 KG-LPAKLRVLDLSSNR-LNRAPQPDELPEVD 297 (310)
T ss_dssp SC-CCSCCSCEECCSCC-CCSCCCTTSCCCCS
T ss_pred hh-hcCCCCEEECCCCc-CCCCchhhhCCCcc
Confidence 21 14899999999995 66543333333333
No 90
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.73 E-value=3.8e-11 Score=107.42 Aligned_cols=224 Identities=18% Similarity=0.094 Sum_probs=111.1
Q ss_pred cCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCC
Q 017279 80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPN 159 (374)
Q Consensus 80 ~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 159 (374)
.++.|+++++.... .....+..+++|+.|+++ .+.+.......+ ..+++|++|+++++ .++. +.. ...++
T Consensus 55 ~l~~L~l~~n~i~~--~~~~~~~~l~~L~~L~L~--~n~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~--l~~--~~~~~ 124 (332)
T 2ft3_A 55 DTTLLDLQNNDISE--LRKDDFKGLQHLYALVLV--NNKISKIHEKAF-SPLRKLQKLYISKN-HLVE--IPP--NLPSS 124 (332)
T ss_dssp TCCEEECCSSCCCE--ECTTTTTTCTTCCEEECC--SSCCCEECGGGS-TTCTTCCEEECCSS-CCCS--CCS--SCCTT
T ss_pred CCeEEECCCCcCCc--cCHhHhhCCCCCcEEECC--CCccCccCHhHh-hCcCCCCEEECCCC-cCCc--cCc--ccccc
Confidence 36677776654321 112234567778888887 344443222222 33677888888775 2221 000 11257
Q ss_pred CcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHH-HHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCC
Q 017279 160 LTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYAL-QAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPD 238 (374)
Q Consensus 160 L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~-~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 238 (374)
|++|+++++ .+.... ......+++|++|+++++. +..... ......+ +|+.|+++++. ++. +.. ...++
T Consensus 125 L~~L~l~~n-~i~~~~-~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~--l~~--~~~~~ 194 (332)
T 2ft3_A 125 LVELRIHDN-RIRKVP-KGVFSGLRNMNCIEMGGNP--LENSGFEPGAFDGL-KLNYLRISEAK-LTG--IPK--DLPET 194 (332)
T ss_dssp CCEEECCSS-CCCCCC-SGGGSSCSSCCEEECCSCC--CBGGGSCTTSSCSC-CCSCCBCCSSB-CSS--CCS--SSCSS
T ss_pred CCEEECCCC-ccCccC-HhHhCCCccCCEEECCCCc--cccCCCCcccccCC-ccCEEECcCCC-CCc--cCc--cccCC
Confidence 788887764 333211 1123457778888877644 322111 1111222 67777776643 222 000 11256
Q ss_pred CCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCC
Q 017279 239 LRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTA 318 (374)
Q Consensus 239 L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 318 (374)
|++|+++++ .++......+ ..+++|+.|+++++. ++..... .+..+++|++|+++++ .
T Consensus 195 L~~L~l~~n-~i~~~~~~~l-~~l~~L~~L~L~~N~-l~~~~~~------------------~~~~l~~L~~L~L~~N-~ 252 (332)
T 2ft3_A 195 LNELHLDHN-KIQAIELEDL-LRYSKLYRLGLGHNQ-IRMIENG------------------SLSFLPTLRELHLDNN-K 252 (332)
T ss_dssp CSCCBCCSS-CCCCCCTTSS-TTCTTCSCCBCCSSC-CCCCCTT------------------GGGGCTTCCEEECCSS-C
T ss_pred CCEEECCCC-cCCccCHHHh-cCCCCCCEEECCCCc-CCcCChh------------------HhhCCCCCCEEECCCC-c
Confidence 777777774 3332211112 236677777777664 3321111 1223467777777763 4
Q ss_pred CCHHHHHHHHhhCC-CccCCCCCceEEecCCccccccc
Q 017279 319 LTPPAVQALCDTFP-ALHTCSGRHSLVMSGCLNLTSVH 355 (374)
Q Consensus 319 l~~~~l~~l~~~~~-~l~~~~~L~~L~ls~C~~l~~~~ 355 (374)
++ .+| .+..+++|+.|+++++. ++...
T Consensus 253 l~---------~lp~~l~~l~~L~~L~l~~N~-l~~~~ 280 (332)
T 2ft3_A 253 LS---------RVPAGLPDLKLLQVVYLHTNN-ITKVG 280 (332)
T ss_dssp CC---------BCCTTGGGCTTCCEEECCSSC-CCBCC
T ss_pred Ce---------ecChhhhcCccCCEEECCCCC-CCccC
Confidence 44 122 24566777777777763 55443
No 91
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.72 E-value=4.3e-09 Score=82.28 Aligned_cols=130 Identities=24% Similarity=0.289 Sum_probs=73.1
Q ss_pred CCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCC
Q 017279 132 HDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCN 211 (374)
Q Consensus 132 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~ 211 (374)
++|+.|+++++ .+++..+......+++|+.|+++++ .+... .....+++|++|+++++. +... +......++
T Consensus 17 ~~l~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~n~--i~~~-~~~~~~~l~ 88 (149)
T 2je0_A 17 SDVKELVLDNS-RSNEGKLEGLTDEFEELEFLSTINV-GLTSI---ANLPKLNKLKKLELSDNR--VSGG-LEVLAEKCP 88 (149)
T ss_dssp GGCSEEECTTC-BCBTTBCCSCCTTCTTCCEEECTTS-CCCCC---TTCCCCTTCCEEECCSSC--CCSC-THHHHHHCT
T ss_pred ccCeEEEccCC-cCChhHHHHHHhhcCCCcEEECcCC-CCCCc---hhhhcCCCCCEEECCCCc--ccch-HHHHhhhCC
Confidence 45666666665 2331111122234677777777764 33332 223456778888887754 3321 344445577
Q ss_pred CCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHH--HHHHhcCCCCceEecC
Q 017279 212 QLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSV--IALANGCPHLRSLGLY 271 (374)
Q Consensus 212 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l--~~l~~~~~~L~~L~l~ 271 (374)
+|++|+++++. +++.........+++|++|++++| .++.... ......+++|+.|+++
T Consensus 89 ~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 89 NLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 88888887754 555332233456788888888885 3432211 1334457888888765
No 92
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.72 E-value=3.1e-09 Score=83.09 Aligned_cols=131 Identities=24% Similarity=0.244 Sum_probs=89.9
Q ss_pred CCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcC
Q 017279 157 CPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGC 236 (374)
Q Consensus 157 ~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 236 (374)
.++|+.|+++++ .+.+..++.....+++|++|+++++. +... .....+++|+.|+++++. +++. +......+
T Consensus 16 ~~~l~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~--l~~~---~~~~~l~~L~~L~Ls~n~-i~~~-~~~~~~~l 87 (149)
T 2je0_A 16 PSDVKELVLDNS-RSNEGKLEGLTDEFEELEFLSTINVG--LTSI---ANLPKLNKLKKLELSDNR-VSGG-LEVLAEKC 87 (149)
T ss_dssp GGGCSEEECTTC-BCBTTBCCSCCTTCTTCCEEECTTSC--CCCC---TTCCCCTTCCEEECCSSC-CCSC-THHHHHHC
T ss_pred CccCeEEEccCC-cCChhHHHHHHhhcCCCcEEECcCCC--CCCc---hhhhcCCCCCEEECCCCc-ccch-HHHHhhhC
Confidence 478999999985 44422233344568999999999865 4332 334568999999999865 4432 34445568
Q ss_pred CCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHH---HHHHhcCCCCCCccccccccccCCCCCcEEec
Q 017279 237 PDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAI---YSLAQSGVKNKPGIWESMKGRYDEEGLQSLNI 313 (374)
Q Consensus 237 ~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 313 (374)
++|+.|++++| .++..........+++|+.|++++|. ++.... ..+.. +++|+.|++
T Consensus 88 ~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~------------------l~~L~~L~l 147 (149)
T 2je0_A 88 PNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKL------------------LPQLTYLDG 147 (149)
T ss_dssp TTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHH------------------CTTCCEETT
T ss_pred CCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHH------------------CCCcccccC
Confidence 99999999995 56654332334469999999999985 554222 23333 389999998
Q ss_pred CC
Q 017279 314 SQ 315 (374)
Q Consensus 314 ~~ 315 (374)
++
T Consensus 148 ~d 149 (149)
T 2je0_A 148 YD 149 (149)
T ss_dssp BC
T ss_pred CC
Confidence 64
No 93
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.71 E-value=6e-11 Score=103.22 Aligned_cols=202 Identities=19% Similarity=0.107 Sum_probs=120.9
Q ss_pred cCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCC
Q 017279 80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPN 159 (374)
Q Consensus 80 ~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 159 (374)
.+++|+++.+..... ....+..+++|+.|+++ .+.+.......+ ..+++|++|+++++ .++......+ ..+++
T Consensus 29 ~l~~L~ls~n~l~~~--~~~~~~~l~~L~~L~l~--~n~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~ 101 (276)
T 2z62_A 29 STKNLDLSFNPLRHL--GSYSFFSFPELQVLDLS--RCEIQTIEDGAY-QSLSHLSTLILTGN-PIQSLALGAF-SGLSS 101 (276)
T ss_dssp TCCEEECTTCCCCEE--CTTTTTTCTTCSEEECT--TCCCCEECTTTT-TTCTTCCEEECTTC-CCCEECTTTT-TTCTT
T ss_pred CccEEECCCCccccc--CHhHhccccCCcEEECC--CCcCCccCHHHc-cCCcCCCEEECCCC-ccCccChhhh-cCCcc
Confidence 378888887654321 12234578999999999 445543222122 34789999999987 3332221222 34799
Q ss_pred CcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCH---HHHHHHHhcC
Q 017279 160 LTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGD---VGVMNLAYGC 236 (374)
Q Consensus 160 L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~---~~~~~l~~~~ 236 (374)
|++|+++++ .+...... ....+++|++|+++++. +....+......+++|++|+++++. ++. ..+..+ ..+
T Consensus 102 L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n~--l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l-~~L 175 (276)
T 2z62_A 102 LQKLVAVET-NLASLENF-PIGHLKTLKELNVAHNL--IQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVL-HQM 175 (276)
T ss_dssp CCEEECTTS-CCCCSTTC-CCTTCTTCCEEECCSSC--CCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHH-HTC
T ss_pred ccEEECCCC-CccccCch-hcccCCCCCEEECcCCc--cceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhh-hhc
Confidence 999999875 33221110 13468999999999855 3332223344568999999999864 433 222222 234
Q ss_pred CCCC-eeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCC
Q 017279 237 PDLR-SLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQ 315 (374)
Q Consensus 237 ~~L~-~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 315 (374)
+.|. .|+++++ .++.... ... ...+|+.|+++++. ++..... .+..+++|+.|++++
T Consensus 176 ~~l~l~L~ls~n-~l~~~~~-~~~-~~~~L~~L~L~~n~-l~~~~~~------------------~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 176 PLLNLSLDLSLN-PMNFIQP-GAF-KEIRLKELALDTNQ-LKSVPDG------------------IFDRLTSLQKIWLHT 233 (276)
T ss_dssp TTCCEEEECCSS-CCCEECT-TSS-CSCCEEEEECCSSC-CSCCCTT------------------TTTTCCSCCEEECCS
T ss_pred cccceeeecCCC-cccccCc-ccc-CCCcccEEECCCCc-eeecCHh------------------HhcccccccEEEccC
Confidence 4444 8999985 4542111 111 24589999999885 5421111 123568999999998
Q ss_pred C
Q 017279 316 C 316 (374)
Q Consensus 316 ~ 316 (374)
+
T Consensus 234 N 234 (276)
T 2z62_A 234 N 234 (276)
T ss_dssp S
T ss_pred C
Confidence 4
No 94
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.70 E-value=3.6e-11 Score=102.25 Aligned_cols=204 Identities=16% Similarity=0.075 Sum_probs=111.9
Q ss_pred CCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCC
Q 017279 105 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCR 184 (374)
Q Consensus 105 ~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~ 184 (374)
++++.|+++ .+.++......+ ..+++|++|+++++..++.-... ....+++|++|++++|..+.... ......++
T Consensus 31 ~~l~~L~l~--~n~l~~i~~~~~-~~l~~L~~L~l~~n~~l~~i~~~-~f~~l~~L~~L~l~~~n~l~~i~-~~~f~~l~ 105 (239)
T 2xwt_C 31 PSTQTLKLI--ETHLRTIPSHAF-SNLPNISRIYVSIDVTLQQLESH-SFYNLSKVTHIEIRNTRNLTYID-PDALKELP 105 (239)
T ss_dssp TTCCEEEEE--SCCCSEECTTTT-TTCTTCCEEEEECCSSCCEECTT-TEESCTTCCEEEEEEETTCCEEC-TTSEECCT
T ss_pred CcccEEEEe--CCcceEECHHHc-cCCCCCcEEeCCCCCCcceeCHh-HcCCCcCCcEEECCCCCCeeEcC-HHHhCCCC
Confidence 367788887 444433211111 34678888888876323221111 12347788888887633443211 11223578
Q ss_pred CCcEEEcCCCccCccHHHHHHHHhcCCCCC---EEeccCCCCCCHHHHHHHHhcCCCCC-eeecCCCCCCCHHHHHHHHh
Q 017279 185 KLKILNLCGCVKAATDYALQAIGRNCNQLQ---SLNLGWCEDVGDVGVMNLAYGCPDLR-SLDLCGCVCITDDSVIALAN 260 (374)
Q Consensus 185 ~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~---~L~l~~~~~~~~~~~~~l~~~~~~L~-~L~l~~~~~l~~~~l~~l~~ 260 (374)
+|++|+++++. +.. +.. +..+++|+ .|+++++..++.... .....+++|+ .|+++++ .++... .....
T Consensus 106 ~L~~L~l~~n~--l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~-~~~~~l~~L~~~L~l~~n-~l~~i~-~~~~~ 177 (239)
T 2xwt_C 106 LLKFLGIFNTG--LKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPV-NAFQGLCNETLTLKLYNN-GFTSVQ-GYAFN 177 (239)
T ss_dssp TCCEEEEEEEC--CCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECT-TTTTTTBSSEEEEECCSC-CCCEEC-TTTTT
T ss_pred CCCEEeCCCCC--Ccc--ccc-cccccccccccEEECCCCcchhhcCc-ccccchhcceeEEEcCCC-CCcccC-HhhcC
Confidence 88888887754 222 222 34567777 888887523433111 1223578888 9999884 444111 11222
Q ss_pred cCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCC-CCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCC
Q 017279 261 GCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDE-EGLQSLNISQCTALTPPAVQALCDTFPALHTCSG 339 (374)
Q Consensus 261 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~ 339 (374)
.++|+.|+++++..++.... ..+..+ ++|+.|++++ +.++. +|.- .+++
T Consensus 178 -~~~L~~L~L~~n~~l~~i~~------------------~~~~~l~~~L~~L~l~~-N~l~~---------l~~~-~~~~ 227 (239)
T 2xwt_C 178 -GTKLDAVYLNKNKYLTVIDK------------------DAFGGVYSGPSLLDVSQ-TSVTA---------LPSK-GLEH 227 (239)
T ss_dssp -TCEEEEEECTTCTTCCEECT------------------TTTTTCSBCCSEEECTT-CCCCC---------CCCT-TCTT
T ss_pred -CCCCCEEEcCCCCCcccCCH------------------HHhhccccCCcEEECCC-Ccccc---------CChh-Hhcc
Confidence 36788888888743432100 112345 7899999988 45552 2322 5788
Q ss_pred CceEEecCCccc
Q 017279 340 RHSLVMSGCLNL 351 (374)
Q Consensus 340 L~~L~ls~C~~l 351 (374)
|+.|++++++++
T Consensus 228 L~~L~l~~~~~l 239 (239)
T 2xwt_C 228 LKELIARNTWTL 239 (239)
T ss_dssp CSEEECTTC---
T ss_pred CceeeccCccCC
Confidence 899999888753
No 95
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.69 E-value=5.2e-10 Score=97.94 Aligned_cols=152 Identities=22% Similarity=0.212 Sum_probs=60.9
Q ss_pred CCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCC
Q 017279 105 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCR 184 (374)
Q Consensus 105 ~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~ 184 (374)
++++.|+++ .+.+.......+ ..+++|++|+++++ .++.... . ..+++|++|+++++ .+.. ++.....++
T Consensus 31 ~~l~~L~L~--~N~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~--~-~~l~~L~~L~Ls~N-~l~~--l~~~~~~l~ 100 (290)
T 1p9a_G 31 KDTTILHLS--ENLLYTFSLATL-MPYTRLTQLNLDRA-ELTKLQV--D-GTLPVLGTLDLSHN-QLQS--LPLLGQTLP 100 (290)
T ss_dssp TTCCEEECT--TSCCSEEEGGGG-TTCTTCCEEECTTS-CCCEEEC--C-SCCTTCCEEECCSS-CCSS--CCCCTTTCT
T ss_pred CCCCEEEcC--CCcCCccCHHHh-hcCCCCCEEECCCC-ccCcccC--C-CCCCcCCEEECCCC-cCCc--CchhhccCC
Confidence 456666665 333332211111 23556666666654 2221100 0 23556666666553 2221 111223355
Q ss_pred CCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCC
Q 017279 185 KLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPH 264 (374)
Q Consensus 185 ~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~ 264 (374)
+|++|+++++. +.... ...+..+++|++|+++++. ++... ......+++|+.|+++++ .++... ......+++
T Consensus 101 ~L~~L~l~~N~--l~~l~-~~~~~~l~~L~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~L~~N-~l~~l~-~~~~~~l~~ 173 (290)
T 1p9a_G 101 ALTVLDVSFNR--LTSLP-LGALRGLGELQELYLKGNE-LKTLP-PGLLTPTPKLEKLSLANN-NLTELP-AGLLNGLEN 173 (290)
T ss_dssp TCCEEECCSSC--CCCCC-SSTTTTCTTCCEEECTTSC-CCCCC-TTTTTTCTTCCEEECTTS-CCSCCC-TTTTTTCTT
T ss_pred CCCEEECCCCc--CcccC-HHHHcCCCCCCEEECCCCC-CCccC-hhhcccccCCCEEECCCC-cCCccC-HHHhcCcCC
Confidence 55666655532 21100 0112234555555555432 22110 111223455555555553 232100 111223455
Q ss_pred CceEecCCC
Q 017279 265 LRSLGLYYC 273 (374)
Q Consensus 265 L~~L~l~~~ 273 (374)
|+.|+++++
T Consensus 174 L~~L~L~~N 182 (290)
T 1p9a_G 174 LDTLLLQEN 182 (290)
T ss_dssp CCEEECCSS
T ss_pred CCEEECCCC
Confidence 555555554
No 96
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.69 E-value=3.6e-09 Score=101.59 Aligned_cols=101 Identities=21% Similarity=0.118 Sum_probs=47.6
Q ss_pred cCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCC
Q 017279 80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPN 159 (374)
Q Consensus 80 ~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 159 (374)
.+++|+++++.... .....+..+++|++|+++ .+.+..-... .+++|++|+++++. ++.-........+++
T Consensus 77 ~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls--~N~l~~lp~~----~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~ 147 (562)
T 3a79_B 77 ELRVLRLSHNRIRS--LDFHVFLFNQDLEYLDVS--HNRLQNISCC----PMASLRHLDLSFND-FDVLPVCKEFGNLTK 147 (562)
T ss_dssp TCCEEECCSCCCCE--ECTTTTTTCTTCCEEECT--TSCCCEECSC----CCTTCSEEECCSSC-CSBCCCCGGGGGCTT
T ss_pred CccEEECCCCCCCc--CCHHHhCCCCCCCEEECC--CCcCCccCcc----ccccCCEEECCCCC-ccccCchHhhcccCc
Confidence 46666666554321 112233455667777776 3333321111 35667777776652 222111011223567
Q ss_pred CcEEeecCCCCCCHHHHHHHHhcCCCC--cEEEcCCC
Q 017279 160 LTRLNISGCTSFSDHALAYLCGFCRKL--KILNLCGC 194 (374)
Q Consensus 160 L~~L~L~~~~~~~~~~~~~l~~~~~~L--~~L~L~~~ 194 (374)
|++|+++++ .+....+. .+++| ++|+++++
T Consensus 148 L~~L~L~~n-~l~~~~~~----~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 148 LTFLGLSAA-KFRQLDLL----PVAHLHLSCILLDLV 179 (562)
T ss_dssp CCEEEEECS-BCCTTTTG----GGTTSCEEEEEEEES
T ss_pred ccEEecCCC-ccccCchh----hhhhceeeEEEeecc
Confidence 777777663 34332221 23444 66666553
No 97
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.69 E-value=5.7e-11 Score=119.56 Aligned_cols=110 Identities=22% Similarity=0.149 Sum_probs=53.7
Q ss_pred ccCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHH-HHhcC
Q 017279 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYA-LAHGC 157 (374)
Q Consensus 79 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~-l~~~~ 157 (374)
..++.|+++++.... ......+..+++|+.|+++ .+.+.......+ ..+++|++|+++++ .+.+..+.. ....+
T Consensus 48 ~~L~~LdLs~n~~~~-~i~~~~f~~L~~L~~L~Ls--~N~l~~~~p~~~-~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L 122 (844)
T 3j0a_A 48 EQLQLLELGSQYTPL-TIDKEAFRNLPNLRILDLG--SSKIYFLHPDAF-QGLFHLFELRLYFC-GLSDAVLKDGYFRNL 122 (844)
T ss_dssp CSCSEEEECTTCCCC-EECTTTTSSCTTCCEEECT--TCCCCEECTTSS-CSCSSCCCEECTTC-CCSSCCSTTCCCSSC
T ss_pred ccCeEEeCCCCCCcc-ccCHHHhcCCCCCCEEECC--CCcCcccCHhHc-cCCcccCEeeCcCC-CCCcccccCcccccc
Confidence 346777776653211 1112233566777777777 333432211112 23667777777765 232211111 12236
Q ss_pred CCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCC
Q 017279 158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGC 194 (374)
Q Consensus 158 ~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 194 (374)
++|++|+++++ .+...........+++|++|+++++
T Consensus 123 ~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 123 KALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp SSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred CCCCEEECCCC-cccccccchhHhhCCCCCEEECCCC
Confidence 67777777764 3322211122345677777777664
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.68 E-value=3.1e-08 Score=86.60 Aligned_cols=150 Identities=21% Similarity=0.158 Sum_probs=89.5
Q ss_pred CCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcC
Q 017279 157 CPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGC 236 (374)
Q Consensus 157 ~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 236 (374)
+++|+.|+++++ .+... .. ...+++|++|+++++. +.... . ...+++|+.|+++++. +++ +.. ...+
T Consensus 45 l~~L~~L~l~~~-~i~~~--~~-~~~l~~L~~L~L~~n~--l~~~~--~-l~~l~~L~~L~l~~n~-l~~--~~~-l~~l 111 (291)
T 1h6t_A 45 LNSIDQIIANNS-DIKSV--QG-IQYLPNVTKLFLNGNK--LTDIK--P-LANLKNLGWLFLDENK-VKD--LSS-LKDL 111 (291)
T ss_dssp HHTCCEEECTTS-CCCCC--TT-GGGCTTCCEEECCSSC--CCCCG--G-GTTCTTCCEEECCSSC-CCC--GGG-GTTC
T ss_pred cCcccEEEccCC-CcccC--hh-HhcCCCCCEEEccCCc--cCCCc--c-cccCCCCCEEECCCCc-CCC--Chh-hccC
Confidence 355666666653 22211 11 2346677777776644 22211 1 3456777777777653 333 112 3457
Q ss_pred CCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCC
Q 017279 237 PDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQC 316 (374)
Q Consensus 237 ~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 316 (374)
++|++|++++| .++. +..+ ..+++|+.|++++|. +++. . .+..+++|++|+++++
T Consensus 112 ~~L~~L~L~~n-~i~~--~~~l-~~l~~L~~L~l~~n~-l~~~--~------------------~l~~l~~L~~L~L~~N 166 (291)
T 1h6t_A 112 KKLKSLSLEHN-GISD--INGL-VHLPQLESLYLGNNK-ITDI--T------------------VLSRLTKLDTLSLEDN 166 (291)
T ss_dssp TTCCEEECTTS-CCCC--CGGG-GGCTTCCEEECCSSC-CCCC--G------------------GGGGCTTCSEEECCSS
T ss_pred CCCCEEECCCC-cCCC--Chhh-cCCCCCCEEEccCCc-CCcc--h------------------hhccCCCCCEEEccCC
Confidence 88888888885 3443 1222 347888888888875 4431 1 1234589999999984
Q ss_pred CCCCHHHHHHHHhhCCCccCCCCCceEEecCCccccccc
Q 017279 317 TALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVH 355 (374)
Q Consensus 317 ~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~~~~ 355 (374)
.+++. +.+..+++|+.|++++| .++...
T Consensus 167 -~l~~~---------~~l~~l~~L~~L~L~~N-~i~~l~ 194 (291)
T 1h6t_A 167 -QISDI---------VPLAGLTKLQNLYLSKN-HISDLR 194 (291)
T ss_dssp -CCCCC---------GGGTTCTTCCEEECCSS-CCCBCG
T ss_pred -ccccc---------hhhcCCCccCEEECCCC-cCCCCh
Confidence 56532 12467899999999999 466653
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.65 E-value=8.3e-09 Score=99.34 Aligned_cols=166 Identities=22% Similarity=0.201 Sum_probs=115.4
Q ss_pred ccCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCC
Q 017279 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP 158 (374)
Q Consensus 79 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 158 (374)
..++.|+++.+....-. -+..+++|+.|+++ .+.+..... ...+++|+.|+++++ .+.. +..+ ..++
T Consensus 43 ~~L~~L~l~~n~i~~l~----~l~~l~~L~~L~Ls--~N~l~~~~~---l~~l~~L~~L~Ls~N-~l~~--l~~l-~~l~ 109 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSVQ----GIQYLPNVTKLFLN--GNKLTDIKP---LTNLKNLGWLFLDEN-KIKD--LSSL-KDLK 109 (605)
T ss_dssp TTCCCCBCTTCCCCCCT----TGGGCTTCCEEECT--TSCCCCCGG---GGGCTTCCEEECCSS-CCCC--CTTS-TTCT
T ss_pred CCCCEEECcCCCCCCCh----HHccCCCCCEEEee--CCCCCCChh---hccCCCCCEEECcCC-CCCC--Chhh-ccCC
Confidence 45888888876543221 24678999999999 444443222 346899999999997 3433 2222 4489
Q ss_pred CCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCC
Q 017279 159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPD 238 (374)
Q Consensus 159 ~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 238 (374)
+|+.|+|+++ .+.. +. ....+++|+.|+|+++. +... .....+++|+.|+|+++. +.+... ...+++
T Consensus 110 ~L~~L~Ls~N-~l~~--l~-~l~~l~~L~~L~Ls~N~--l~~l---~~l~~l~~L~~L~Ls~N~-l~~~~~---l~~l~~ 176 (605)
T 1m9s_A 110 KLKSLSLEHN-GISD--IN-GLVHLPQLESLYLGNNK--ITDI---TVLSRLTKLDTLSLEDNQ-ISDIVP---LAGLTK 176 (605)
T ss_dssp TCCEEECTTS-CCCC--CG-GGGGCTTCSEEECCSSC--CCCC---GGGGSCTTCSEEECCSSC-CCCCGG---GTTCTT
T ss_pred CCCEEEecCC-CCCC--Cc-cccCCCccCEEECCCCc--cCCc---hhhcccCCCCEEECcCCc-CCCchh---hccCCC
Confidence 9999999985 4443 22 24568999999999865 3332 334578999999999865 443221 567899
Q ss_pred CCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCC
Q 017279 239 LRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCR 274 (374)
Q Consensus 239 L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~ 274 (374)
|+.|++++| .+++. ..+ ..+++|+.|++++|.
T Consensus 177 L~~L~Ls~N-~i~~l--~~l-~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 177 LQNLYLSKN-HISDL--RAL-AGLKNLDVLELFSQE 208 (605)
T ss_dssp CCEEECCSS-CCCBC--GGG-TTCTTCSEEECCSEE
T ss_pred CCEEECcCC-CCCCC--hHH-ccCCCCCEEEccCCc
Confidence 999999996 45532 233 358999999999875
No 100
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.62 E-value=1e-08 Score=98.96 Aligned_cols=38 Identities=29% Similarity=0.420 Sum_probs=25.0
Q ss_pred CCCCcEEecCCCCCCCHHHHHHHHhhCC-CccCCCCCceEEecCCccccc
Q 017279 305 EEGLQSLNISQCTALTPPAVQALCDTFP-ALHTCSGRHSLVMSGCLNLTS 353 (374)
Q Consensus 305 ~~~L~~L~l~~~~~l~~~~l~~l~~~~~-~l~~~~~L~~L~ls~C~~l~~ 353 (374)
+++|+.|++++| .++. +| .+..+++|+.|++++|+ ++.
T Consensus 260 ~~~L~~L~Ls~N-~L~~---------lp~~l~~l~~L~~L~L~~N~-l~~ 298 (622)
T 3g06_A 260 PSGLLSLSVYRN-QLTR---------LPESLIHLSSETTVNLEGNP-LSE 298 (622)
T ss_dssp CTTCCEEECCSS-CCCS---------CCGGGGGSCTTCEEECCSCC-CCH
T ss_pred cccCcEEeCCCC-CCCc---------CCHHHhhccccCEEEecCCC-CCC
Confidence 467888888874 5551 22 24667888888888885 443
No 101
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.60 E-value=4.2e-08 Score=94.14 Aligned_cols=175 Identities=17% Similarity=0.193 Sum_probs=100.6
Q ss_pred CCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccH-HHHHHHHhcC
Q 017279 132 HDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATD-YALQAIGRNC 210 (374)
Q Consensus 132 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~-~~~~~l~~~~ 210 (374)
.+|++|+++++..... . ....+++|++|+++++ .+... .+.....+++|++|+++++. +.. ..+......+
T Consensus 331 ~~L~~L~l~~n~~~~~-~---~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~~~l 402 (562)
T 3a79_B 331 MNIKMLSISDTPFIHM-V---CPPSPSSFTFLNFTQN-VFTDS-VFQGCSTLKRLQTLILQRNG--LKNFFKVALMTKNM 402 (562)
T ss_dssp CCCSEEEEESSCCCCC-C---CCSSCCCCCEEECCSS-CCCTT-TTTTCCSCSSCCEEECCSSC--CCBTTHHHHTTTTC
T ss_pred CcceEEEccCCCcccc-c---CccCCCCceEEECCCC-ccccc-hhhhhcccCCCCEEECCCCC--cCCcccchhhhcCC
Confidence 4677777776532111 0 0134677888888764 34331 11223457788888887754 332 2333334567
Q ss_pred CCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcC-CCCceEecCCCCCCCHHHHHHHHhcCC
Q 017279 211 NQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGC-PHLRSLGLYYCRNITDRAIYSLAQSGV 289 (374)
Q Consensus 211 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~-~~L~~L~l~~~~~i~~~~~~~l~~~~~ 289 (374)
++|+.|+++++. ++..........+++|+.|++++| .++... ...+ ++|+.|+++++. ++.
T Consensus 403 ~~L~~L~l~~N~-l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~----~~~l~~~L~~L~L~~N~-l~~----------- 464 (562)
T 3a79_B 403 SSLETLDVSLNS-LNSHAYDRTCAWAESILVLNLSSN-MLTGSV----FRCLPPKVKVLDLHNNR-IMS----------- 464 (562)
T ss_dssp TTCCEEECTTSC-CBSCCSSCCCCCCTTCCEEECCSS-CCCGGG----GSSCCTTCSEEECCSSC-CCC-----------
T ss_pred CCCCEEECCCCc-CCCccChhhhcCcccCCEEECCCC-CCCcch----hhhhcCcCCEEECCCCc-Ccc-----------
Confidence 788888887654 222101112334677888888874 454322 1223 578888888774 441
Q ss_pred CCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCC--ccCCCCCceEEecCCcc
Q 017279 290 KNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPA--LHTCSGRHSLVMSGCLN 350 (374)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~--l~~~~~L~~L~ls~C~~ 350 (374)
.+.++..+++|++|++++ +.++. +|. +..+++|+.|++++++-
T Consensus 465 --------ip~~~~~l~~L~~L~L~~-N~l~~---------l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 465 --------IPKDVTHLQALQELNVAS-NQLKS---------VPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp --------CCTTTTSSCCCSEEECCS-SCCCC---------CCTTSTTTCTTCCCEECCSCCB
T ss_pred --------cChhhcCCCCCCEEECCC-CCCCC---------CCHHHHhcCCCCCEEEecCCCc
Confidence 011223568999999998 45652 232 56788999999999863
No 102
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.56 E-value=3.7e-09 Score=84.47 Aligned_cols=133 Identities=23% Similarity=0.198 Sum_probs=77.5
Q ss_pred CCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCC
Q 017279 132 HDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCN 211 (374)
Q Consensus 132 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~ 211 (374)
++|++|+++++ .+++..+......+++|+.|+++++ .+... .....+++|++|+++++. +... +......++
T Consensus 24 ~~L~~L~l~~n-~l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~N~--l~~~-~~~~~~~l~ 95 (168)
T 2ell_A 24 AAVRELVLDNC-KSNDGKIEGLTAEFVNLEFLSLINV-GLISV---SNLPKLPKLKKLELSENR--IFGG-LDMLAEKLP 95 (168)
T ss_dssp TSCSEEECCSC-BCBTTBCSSCCGGGGGCCEEEEESS-CCCCC---SSCCCCSSCCEEEEESCC--CCSC-CCHHHHHCT
T ss_pred ccCCEEECCCC-CCChhhHHHHHHhCCCCCEEeCcCC-CCCCh---hhhccCCCCCEEECcCCc--CchH-HHHHHhhCC
Confidence 55677777665 2321112222234677777877764 34332 233457788888887754 3321 334455578
Q ss_pred CCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHH--HHHHHhcCCCCceEecCCCC
Q 017279 212 QLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDS--VIALANGCPHLRSLGLYYCR 274 (374)
Q Consensus 212 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~--l~~l~~~~~~L~~L~l~~~~ 274 (374)
+|+.|+++++. +++.........+++|+.|++++| .++... .......+++|+.|++.+|.
T Consensus 96 ~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 96 NLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp TCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 88888888754 444211123346788888888885 343221 12344568889999888775
No 103
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.55 E-value=2.1e-09 Score=85.90 Aligned_cols=134 Identities=20% Similarity=0.190 Sum_probs=73.4
Q ss_pred CCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCC
Q 017279 184 RKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCP 263 (374)
Q Consensus 184 ~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~ 263 (374)
++|++|+++++. +.+..+......+++|+.|+++++. ++.. .....+++|+.|++++| .++.. +..+...++
T Consensus 24 ~~L~~L~l~~n~--l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~ 95 (168)
T 2ell_A 24 AAVRELVLDNCK--SNDGKIEGLTAEFVNLEFLSLINVG-LISV---SNLPKLPKLKKLELSEN-RIFGG-LDMLAEKLP 95 (168)
T ss_dssp TSCSEEECCSCB--CBTTBCSSCCGGGGGCCEEEEESSC-CCCC---SSCCCCSSCCEEEEESC-CCCSC-CCHHHHHCT
T ss_pred ccCCEEECCCCC--CChhhHHHHHHhCCCCCEEeCcCCC-CCCh---hhhccCCCCCEEECcCC-cCchH-HHHHHhhCC
Confidence 556666666543 2211222223446677777776654 3332 22335677777777774 34321 233344577
Q ss_pred CCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCHHHH--HHHHhhCCCccCCCCCc
Q 017279 264 HLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAV--QALCDTFPALHTCSGRH 341 (374)
Q Consensus 264 ~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l--~~l~~~~~~l~~~~~L~ 341 (374)
+|+.|++++|. +++... +..+..+++|++|+++++ .++.... ... +..+|+|+
T Consensus 96 ~L~~L~Ls~N~-l~~~~~-----------------~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~------~~~l~~L~ 150 (168)
T 2ell_A 96 NLTHLNLSGNK-LKDIST-----------------LEPLKKLECLKSLDLFNC-EVTNLNDYRESV------FKLLPQLT 150 (168)
T ss_dssp TCCEEECBSSS-CCSSGG-----------------GGGGSSCSCCCEEECCSS-GGGTSTTHHHHH------HTTCSSCC
T ss_pred CCCEEeccCCc-cCcchh-----------------HHHHhcCCCCCEEEeeCC-cCcchHHHHHHH------HHhCccCc
Confidence 88888887774 443110 011234578888888874 4442211 112 25678888
Q ss_pred eEEecCCcc
Q 017279 342 SLVMSGCLN 350 (374)
Q Consensus 342 ~L~ls~C~~ 350 (374)
.|++++|..
T Consensus 151 ~L~l~~n~~ 159 (168)
T 2ell_A 151 YLDGYDRED 159 (168)
T ss_dssp EETTEETTS
T ss_pred EecCCCCCh
Confidence 998888863
No 104
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.55 E-value=9.1e-10 Score=95.37 Aligned_cols=179 Identities=18% Similarity=0.133 Sum_probs=90.5
Q ss_pred cCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCC
Q 017279 80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPN 159 (374)
Q Consensus 80 ~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 159 (374)
.++.|+++.+.... .....+..+++|+.|+++ .+.+.... ..+...+++|++|+++++ .++.... .....+++
T Consensus 38 ~l~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~--~n~l~~i~-~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~ 110 (270)
T 2o6q_A 38 DTKKLDLQSNKLSS--LPSKAFHRLTKLRLLYLN--DNKLQTLP-AGIFKELKNLETLWVTDN-KLQALPI-GVFDQLVN 110 (270)
T ss_dssp TCSEEECCSSCCSC--CCTTSSSSCTTCCEEECC--SSCCSCCC-TTTTSSCTTCCEEECCSS-CCCCCCT-TTTTTCSS
T ss_pred CCCEEECcCCCCCe--eCHHHhcCCCCCCEEECC--CCccCeeC-hhhhcCCCCCCEEECCCC-cCCcCCH-hHcccccC
Confidence 36777776654321 112234466778888887 33333211 111233677888888775 2322111 12234677
Q ss_pred CcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCC
Q 017279 160 LTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDL 239 (374)
Q Consensus 160 L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 239 (374)
|++|+++++ .+.... ......+++|++|+++++. +.... ...+..+++|+.|+++++. ++.... .....+++|
T Consensus 111 L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n~--l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L 183 (270)
T 2o6q_A 111 LAELRLDRN-QLKSLP-PRVFDSLTKLTYLSLGYNE--LQSLP-KGVFDKLTSLKELRLYNNQ-LKRVPE-GAFDKLTEL 183 (270)
T ss_dssp CCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC--CCCCC-TTTTTTCTTCCEEECCSSC-CSCCCT-TTTTTCTTC
T ss_pred CCEEECCCC-ccCeeC-HHHhCcCcCCCEEECCCCc--CCccC-HhHccCCcccceeEecCCc-CcEeCh-hHhccCCCc
Confidence 888888763 332211 1112356778888887754 22111 1123456778888887653 322111 112346778
Q ss_pred CeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCC
Q 017279 240 RSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCR 274 (374)
Q Consensus 240 ~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~ 274 (374)
+.|+++++ .++... ......+++|+.|++++++
T Consensus 184 ~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 184 KTLKLDNN-QLKRVP-EGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CEEECCSS-CCSCCC-TTTTTTCTTCCEEECCSSC
T ss_pred CEEECCCC-cCCcCC-HHHhccccCCCEEEecCCC
Confidence 88888774 343111 1112235667777766553
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.52 E-value=2.3e-08 Score=86.05 Aligned_cols=34 Identities=15% Similarity=0.185 Sum_probs=16.8
Q ss_pred CCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCc
Q 017279 306 EGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCL 349 (374)
Q Consensus 306 ~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~ 349 (374)
++|+.|++++ +.+++. +.+..+++|+.|++++++
T Consensus 150 ~~L~~L~L~~-N~i~~~---------~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 150 SKLEVLDLHG-NEITNT---------GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp TTCCEEECTT-SCCCBC---------TTSTTCCCCCEEEEEEEE
T ss_pred CCCCEEECCC-CcCcch---------HHhccCCCCCEEeCCCCc
Confidence 5555555555 234321 223445555666655553
No 106
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.46 E-value=1.6e-08 Score=86.48 Aligned_cols=132 Identities=20% Similarity=0.170 Sum_probs=73.1
Q ss_pred CCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCC
Q 017279 132 HDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCN 211 (374)
Q Consensus 132 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~ 211 (374)
++++.|+++++ .++......+ ..+++|++|+++++ .+.... ......+++|++|+++++. +.... ...+..++
T Consensus 35 ~~l~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~n~--l~~~~-~~~~~~l~ 107 (251)
T 3m19_A 35 ADTEKLDLQST-GLATLSDATF-RGLTKLTWLNLDYN-QLQTLS-AGVFDDLTELGTLGLANNQ--LASLP-LGVFDHLT 107 (251)
T ss_dssp TTCCEEECTTS-CCCCCCTTTT-TTCTTCCEEECTTS-CCCCCC-TTTTTTCTTCCEEECTTSC--CCCCC-TTTTTTCT
T ss_pred CCCCEEEccCC-CcCccCHhHh-cCcccCCEEECCCC-cCCccC-HhHhccCCcCCEEECCCCc--ccccC-hhHhcccC
Confidence 57888888886 3332211122 34788888888874 333211 1123457788888888754 32111 12234577
Q ss_pred CCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCC
Q 017279 212 QLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCR 274 (374)
Q Consensus 212 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~ 274 (374)
+|++|+++++. ++... ......+++|+.|+++++ .++.... .....+++|+.|+++++.
T Consensus 108 ~L~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N~ 166 (251)
T 3m19_A 108 QLDKLYLGGNQ-LKSLP-SGVFDRLTKLKELRLNTN-QLQSIPA-GAFDKLTNLQTLSLSTNQ 166 (251)
T ss_dssp TCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC
T ss_pred CCCEEEcCCCc-CCCcC-hhHhccCCcccEEECcCC-cCCccCH-HHcCcCcCCCEEECCCCc
Confidence 88888887753 33211 112235677888888874 4432111 112246778888877764
No 107
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.45 E-value=2.5e-07 Score=89.21 Aligned_cols=36 Identities=33% Similarity=0.287 Sum_probs=23.4
Q ss_pred CCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCcccc
Q 017279 304 DEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLT 352 (374)
Q Consensus 304 ~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~ 352 (374)
.+++|+.|+++++ .++ .+|. .+++|+.|++++| +++
T Consensus 239 ~l~~L~~L~Ls~N-~L~---------~lp~--~~~~L~~L~Ls~N-~L~ 274 (622)
T 3g06_A 239 LPSELKELMVSGN-RLT---------SLPM--LPSGLLSLSVYRN-QLT 274 (622)
T ss_dssp CCTTCCEEECCSS-CCS---------CCCC--CCTTCCEEECCSS-CCC
T ss_pred CCCcCcEEECCCC-CCC---------cCCc--ccccCcEEeCCCC-CCC
Confidence 3467777777773 454 2333 4677888888888 355
No 108
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.35 E-value=1.6e-05 Score=64.15 Aligned_cols=127 Identities=13% Similarity=0.167 Sum_probs=62.3
Q ss_pred HHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhc---CCCCCeeecCCCCCCCHHHHHHHHh---cCCCCceEecCCCCC
Q 017279 202 ALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYG---CPDLRSLDLCGCVCITDDSVIALAN---GCPHLRSLGLYYCRN 275 (374)
Q Consensus 202 ~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~---~~~L~~L~l~~~~~l~~~~l~~l~~---~~~~L~~L~l~~~~~ 275 (374)
.+..+...-+.|+.|+++++..+.+.+...++.. -..|+.|++++ +.+++.+...+.+ .-..|++|+|+++.
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~-n~igd~ga~alA~aL~~N~tL~~L~L~~N~- 109 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLAN-TAISDSEARGLIELIETSPSLRVLNVESNF- 109 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTT-SCCBHHHHTTHHHHHHHCSSCCEEECCSSB-
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccC-CCCChHHHHHHHHHHhcCCccCeEecCCCc-
Confidence 3444444455566666654334555554444332 34566666665 3455555433332 23456666666553
Q ss_pred CCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCC-C-CCCHHHHHHHHhhCCCccCCCCCceEEecC
Q 017279 276 ITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQC-T-ALTPPAVQALCDTFPALHTCSGRHSLVMSG 347 (374)
Q Consensus 276 i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~-~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~ 347 (374)
|++.+...++..... -+.|++|+|+++ . .+.+.+...++..+ ..-+.|+.|+++.
T Consensus 110 Ig~~Ga~ala~aL~~--------------N~tL~~L~L~n~~~~~ig~~g~~~ia~aL---~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 110 LTPELLARLLRSTLV--------------TQSIVEFKADNQRQSVLGNQVEMDMMMAI---EENESLLRVGISF 166 (197)
T ss_dssp CCHHHHHHHHHHTTT--------------TCCCSEEECCCCSSCCCCHHHHHHHHHHH---HHCSSCCEEECCC
T ss_pred CCHHHHHHHHHHHhh--------------CCceeEEECCCCcCcCcCHHHHHHHHHHH---HhCCCcCeEeccC
Confidence 666666655544211 134666666542 1 45555444444332 3344556666653
No 109
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.34 E-value=1.8e-07 Score=87.07 Aligned_cols=12 Identities=8% Similarity=-0.161 Sum_probs=6.8
Q ss_pred CCCCceEEecCC
Q 017279 337 CSGRHSLVMSGC 348 (374)
Q Consensus 337 ~~~L~~L~ls~C 348 (374)
+++|+.|++++|
T Consensus 356 l~~L~~L~L~~N 367 (454)
T 1jl5_A 356 PQNLKQLHVEYN 367 (454)
T ss_dssp CTTCCEEECCSS
T ss_pred hhhccEEECCCC
Confidence 455566666555
No 110
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.32 E-value=1.6e-08 Score=86.41 Aligned_cols=187 Identities=14% Similarity=0.133 Sum_probs=112.4
Q ss_pred cchhHHHhhh-ccCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCH
Q 017279 69 VCSGWRDAIC-LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSD 147 (374)
Q Consensus 69 vc~~w~~~~~-~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 147 (374)
.|..|....| ...+.++++...... ++. .-.++++.|+++ .+.+.......+ ..+++|++|+++++ .++.
T Consensus 3 ~Cp~~~gC~C~~~~~~l~~~~~~l~~---~p~--~~~~~l~~L~L~--~n~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~ 73 (251)
T 3m19_A 3 TCETVTGCTCNEGKKEVDCQGKSLDS---VPS--GIPADTEKLDLQ--STGLATLSDATF-RGLTKLTWLNLDYN-QLQT 73 (251)
T ss_dssp -CHHHHSSEEEGGGTEEECTTCCCSS---CCS--CCCTTCCEEECT--TSCCCCCCTTTT-TTCTTCCEEECTTS-CCCC
T ss_pred cCCCCCceEcCCCCeEEecCCCCccc---cCC--CCCCCCCEEEcc--CCCcCccCHhHh-cCcccCCEEECCCC-cCCc
Confidence 4666655555 346677776543321 111 123689999999 444443222222 34789999999997 3433
Q ss_pred HHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHH
Q 017279 148 RSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDV 227 (374)
Q Consensus 148 ~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~ 227 (374)
... .....+++|++|+++++ .+.... ......+++|++|+++++. +.... ...+..+++|+.|+++++. ++..
T Consensus 74 ~~~-~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~N~--l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~ 146 (251)
T 3m19_A 74 LSA-GVFDDLTELGTLGLANN-QLASLP-LGVFDHLTQLDKLYLGGNQ--LKSLP-SGVFDRLTKLKELRLNTNQ-LQSI 146 (251)
T ss_dssp CCT-TTTTTCTTCCEEECTTS-CCCCCC-TTTTTTCTTCCEEECCSSC--CCCCC-TTTTTTCTTCCEEECCSSC-CCCC
T ss_pred cCH-hHhccCCcCCEEECCCC-cccccC-hhHhcccCCCCEEEcCCCc--CCCcC-hhHhccCCcccEEECcCCc-CCcc
Confidence 211 12234799999999984 444211 1223468999999999854 33111 1223468999999999864 4432
Q ss_pred HHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCC
Q 017279 228 GVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCR 274 (374)
Q Consensus 228 ~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~ 274 (374)
.. .....+++|+.|+++++ .++.... .....+++|+.|+++++.
T Consensus 147 ~~-~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 147 PA-GAFDKLTNLQTLSLSTN-QLQSVPH-GAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CT-TTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSCC
T ss_pred CH-HHcCcCcCCCEEECCCC-cCCccCH-HHHhCCCCCCEEEeeCCc
Confidence 11 12346799999999995 4542111 122357889999998875
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.26 E-value=6.2e-07 Score=77.05 Aligned_cols=126 Identities=16% Similarity=0.128 Sum_probs=76.4
Q ss_pred CCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcC
Q 017279 183 CRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGC 262 (374)
Q Consensus 183 ~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~ 262 (374)
+++|++|+++++. +..- .. ...+++|+.|+++++. +++.. . ...+++|+.|++++| .++. +..+. .
T Consensus 40 l~~L~~L~l~~n~--i~~l--~~-l~~l~~L~~L~L~~N~-i~~~~--~-l~~l~~L~~L~L~~N-~l~~--l~~~~--~ 105 (263)
T 1xeu_A 40 LSGVQNFNGDNSN--IQSL--AG-MQFFTNLKELHLSHNQ-ISDLS--P-LKDLTKLEELSVNRN-RLKN--LNGIP--S 105 (263)
T ss_dssp HTTCSEEECTTSC--CCCC--TT-GGGCTTCCEEECCSSC-CCCCG--G-GTTCSSCCEEECCSS-CCSC--CTTCC--C
T ss_pred cCcCcEEECcCCC--cccc--hH-HhhCCCCCEEECCCCc-cCCCh--h-hccCCCCCEEECCCC-ccCC--cCccc--c
Confidence 4666666666643 2211 11 2346677777776643 33321 1 445677777777774 3432 11111 2
Q ss_pred CCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCce
Q 017279 263 PHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHS 342 (374)
Q Consensus 263 ~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~ 342 (374)
++|+.|+++++. +++. . .+..+++|+.|++++ +.+++ ++.+..+++|+.
T Consensus 106 ~~L~~L~L~~N~-l~~~--~------------------~l~~l~~L~~L~Ls~-N~i~~---------~~~l~~l~~L~~ 154 (263)
T 1xeu_A 106 ACLSRLFLDNNE-LRDT--D------------------SLIHLKNLEILSIRN-NKLKS---------IVMLGFLSKLEV 154 (263)
T ss_dssp SSCCEEECCSSC-CSBS--G------------------GGTTCTTCCEEECTT-SCCCB---------CGGGGGCTTCCE
T ss_pred CcccEEEccCCc-cCCC--h------------------hhcCcccccEEECCC-CcCCC---------ChHHccCCCCCE
Confidence 778888888874 5431 1 123568999999998 46764 234577899999
Q ss_pred EEecCCcccccc
Q 017279 343 LVMSGCLNLTSV 354 (374)
Q Consensus 343 L~ls~C~~l~~~ 354 (374)
|++++|. +++.
T Consensus 155 L~L~~N~-i~~~ 165 (263)
T 1xeu_A 155 LDLHGNE-ITNT 165 (263)
T ss_dssp EECTTSC-CCBC
T ss_pred EECCCCc-Ccch
Confidence 9999984 6665
No 112
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.25 E-value=7.6e-08 Score=84.10 Aligned_cols=200 Identities=20% Similarity=0.191 Sum_probs=126.7
Q ss_pred hcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHh
Q 017279 102 PKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCG 181 (374)
Q Consensus 102 ~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~ 181 (374)
..+++++.+++. ...++... ....++++.|+++++ .++......+ ..+++|++|+++++ .++.... ..
T Consensus 7 ~~l~~l~~l~~~--~~~l~~ip----~~~~~~l~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~---~~ 74 (290)
T 1p9a_G 7 SKVASHLEVNCD--KRNLTALP----PDLPKDTTILHLSEN-LLYTFSLATL-MPYTRLTQLNLDRA-ELTKLQV---DG 74 (290)
T ss_dssp ECSTTCCEEECT--TSCCSSCC----SCCCTTCCEEECTTS-CCSEEEGGGG-TTCTTCCEEECTTS-CCCEEEC---CS
T ss_pred cccCCccEEECC--CCCCCcCC----CCCCCCCCEEEcCCC-cCCccCHHHh-hcCCCCCEEECCCC-ccCcccC---CC
Confidence 356778888887 34443211 012468999999997 3443222222 34799999999984 4443211 14
Q ss_pred cCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhc
Q 017279 182 FCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANG 261 (374)
Q Consensus 182 ~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~ 261 (374)
.+++|++|+++++. +. .+......+++|+.|+++++. ++... ......+++|+.|+++++ .++... ......
T Consensus 75 ~l~~L~~L~Ls~N~--l~--~l~~~~~~l~~L~~L~l~~N~-l~~l~-~~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~ 146 (290)
T 1p9a_G 75 TLPVLGTLDLSHNQ--LQ--SLPLLGQTLPALTVLDVSFNR-LTSLP-LGALRGLGELQELYLKGN-ELKTLP-PGLLTP 146 (290)
T ss_dssp CCTTCCEEECCSSC--CS--SCCCCTTTCTTCCEEECCSSC-CCCCC-SSTTTTCTTCCEEECTTS-CCCCCC-TTTTTT
T ss_pred CCCcCCEEECCCCc--CC--cCchhhccCCCCCEEECCCCc-CcccC-HHHHcCCCCCCEEECCCC-CCCccC-hhhccc
Confidence 68999999999854 33 222234568899999998854 43211 122346789999999995 454211 122335
Q ss_pred CCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCC-CccCCCCC
Q 017279 262 CPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFP-ALHTCSGR 340 (374)
Q Consensus 262 ~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~-~l~~~~~L 340 (374)
+++|+.|+++++. ++.-.. ..+..+++|+.|++++ +.++. +| .+..+++|
T Consensus 147 l~~L~~L~L~~N~-l~~l~~------------------~~~~~l~~L~~L~L~~-N~l~~---------ip~~~~~~~~L 197 (290)
T 1p9a_G 147 TPKLEKLSLANNN-LTELPA------------------GLLNGLENLDTLLLQE-NSLYT---------IPKGFFGSHLL 197 (290)
T ss_dssp CTTCCEEECTTSC-CSCCCT------------------TTTTTCTTCCEEECCS-SCCCC---------CCTTTTTTCCC
T ss_pred ccCCCEEECCCCc-CCccCH------------------HHhcCcCCCCEEECCC-CcCCc---------cChhhcccccC
Confidence 7899999999875 442100 0123568999999998 45652 22 34567789
Q ss_pred ceEEecCCcc
Q 017279 341 HSLVMSGCLN 350 (374)
Q Consensus 341 ~~L~ls~C~~ 350 (374)
+.|++++++-
T Consensus 198 ~~l~L~~Np~ 207 (290)
T 1p9a_G 198 PFAFLHGNPW 207 (290)
T ss_dssp SEEECCSCCB
T ss_pred CeEEeCCCCc
Confidence 9999998764
No 113
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.19 E-value=2.8e-08 Score=82.33 Aligned_cols=34 Identities=24% Similarity=0.304 Sum_probs=15.4
Q ss_pred CCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecC
Q 017279 132 HDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISG 167 (374)
Q Consensus 132 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~ 167 (374)
++|++|+++++ .++... ......+++|++|++++
T Consensus 28 ~~l~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~ 61 (208)
T 2o6s_A 28 AQTTYLDLETN-SLKSLP-NGVFDELTSLTQLYLGG 61 (208)
T ss_dssp TTCSEEECCSS-CCCCCC-TTTTTTCTTCSEEECCS
T ss_pred CCCcEEEcCCC-ccCcCC-hhhhcccccCcEEECCC
Confidence 45666666664 222111 11112345566666654
No 114
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.18 E-value=1.9e-07 Score=75.06 Aligned_cols=80 Identities=15% Similarity=0.155 Sum_probs=34.2
Q ss_pred CCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcC
Q 017279 157 CPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGC 236 (374)
Q Consensus 157 ~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 236 (374)
+++|+.|+++++ .++. ++.+....++|++|+++++. +..- .....+++|+.|+++++. ++... ..+...+
T Consensus 18 ~~~L~~L~l~~n-~l~~--i~~~~~~~~~L~~L~Ls~N~--l~~~---~~l~~l~~L~~L~Ls~N~-l~~~~-~~~~~~l 87 (176)
T 1a9n_A 18 AVRDRELDLRGY-KIPV--IENLGATLDQFDAIDFSDNE--IRKL---DGFPLLRRLKTLLVNNNR-ICRIG-EGLDQAL 87 (176)
T ss_dssp TTSCEEEECTTS-CCCS--CCCGGGGTTCCSEEECCSSC--CCEE---CCCCCCSSCCEEECCSSC-CCEEC-SCHHHHC
T ss_pred cCCceEEEeeCC-CCch--hHHhhhcCCCCCEEECCCCC--CCcc---cccccCCCCCEEECCCCc-ccccC-cchhhcC
Confidence 456666666653 3332 12222223466666666543 2221 112234555555555432 22110 0112234
Q ss_pred CCCCeeecCC
Q 017279 237 PDLRSLDLCG 246 (374)
Q Consensus 237 ~~L~~L~l~~ 246 (374)
++|+.|++++
T Consensus 88 ~~L~~L~L~~ 97 (176)
T 1a9n_A 88 PDLTELILTN 97 (176)
T ss_dssp TTCCEEECCS
T ss_pred CCCCEEECCC
Confidence 5555555555
No 115
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.17 E-value=1.9e-09 Score=91.48 Aligned_cols=185 Identities=16% Similarity=0.071 Sum_probs=111.8
Q ss_pred CCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCC
Q 017279 132 HDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCN 211 (374)
Q Consensus 132 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~ 211 (374)
+++++|+++++ .++...... ...+++|++|+++++..++.... .....+++|++|+++++.. +.... ...+..++
T Consensus 31 ~~l~~L~l~~n-~l~~i~~~~-~~~l~~L~~L~l~~n~~l~~i~~-~~f~~l~~L~~L~l~~~n~-l~~i~-~~~f~~l~ 105 (239)
T 2xwt_C 31 PSTQTLKLIET-HLRTIPSHA-FSNLPNISRIYVSIDVTLQQLES-HSFYNLSKVTHIEIRNTRN-LTYID-PDALKELP 105 (239)
T ss_dssp TTCCEEEEESC-CCSEECTTT-TTTCTTCCEEEEECCSSCCEECT-TTEESCTTCCEEEEEEETT-CCEEC-TTSEECCT
T ss_pred CcccEEEEeCC-cceEECHHH-ccCCCCCcEEeCCCCCCcceeCH-hHcCCCcCCcEEECCCCCC-eeEcC-HHHhCCCC
Confidence 48999999986 343321111 23489999999998532432111 1234689999999986222 22111 12234689
Q ss_pred CCCEEeccCCCCCCHHHHHHHHhcCCCCC---eeecCCCCCCCHHHHHHHHhcCCCCc-eEecCCCCCCCHHHHHHHHhc
Q 017279 212 QLQSLNLGWCEDVGDVGVMNLAYGCPDLR---SLDLCGCVCITDDSVIALANGCPHLR-SLGLYYCRNITDRAIYSLAQS 287 (374)
Q Consensus 212 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~---~L~l~~~~~l~~~~l~~l~~~~~~L~-~L~l~~~~~i~~~~~~~l~~~ 287 (374)
+|++|+++++. ++. +.. ...+++|+ .|+++++..++.... .....+++|+ .|+++++. ++.-..
T Consensus 106 ~L~~L~l~~n~-l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~-~~~~~l~~L~~~L~l~~n~-l~~i~~------ 173 (239)
T 2xwt_C 106 LLKFLGIFNTG-LKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPV-NAFQGLCNETLTLKLYNNG-FTSVQG------ 173 (239)
T ss_dssp TCCEEEEEEEC-CCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECT-TTTTTTBSSEEEEECCSCC-CCEECT------
T ss_pred CCCEEeCCCCC-Ccc--ccc-cccccccccccEEECCCCcchhhcCc-ccccchhcceeEEEcCCCC-CcccCH------
Confidence 99999998754 332 112 34567787 999999634542211 1123588999 99998874 432100
Q ss_pred CCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCC-CCCceEEecCCcccccc
Q 017279 288 GVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTC-SGRHSLVMSGCLNLTSV 354 (374)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~-~~L~~L~ls~C~~l~~~ 354 (374)
.....++|++|+++++..++.... ..+..+ ++|+.|+++++. ++..
T Consensus 174 -------------~~~~~~~L~~L~L~~n~~l~~i~~-------~~~~~l~~~L~~L~l~~N~-l~~l 220 (239)
T 2xwt_C 174 -------------YAFNGTKLDAVYLNKNKYLTVIDK-------DAFGGVYSGPSLLDVSQTS-VTAL 220 (239)
T ss_dssp -------------TTTTTCEEEEEECTTCTTCCEECT-------TTTTTCSBCCSEEECTTCC-CCCC
T ss_pred -------------hhcCCCCCCEEEcCCCCCcccCCH-------HHhhccccCCcEEECCCCc-cccC
Confidence 001126899999999644652111 123567 899999999974 5544
No 116
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.15 E-value=7.9e-07 Score=82.74 Aligned_cols=198 Identities=15% Similarity=0.093 Sum_probs=119.4
Q ss_pred ccCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCC
Q 017279 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP 158 (374)
Q Consensus 79 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 158 (374)
..+++++++.+.... +-...++|+.|+++ .+.+.. + ....++|++|+++++ .++. +....+
T Consensus 71 ~~l~~L~l~~~~l~~------lp~~~~~L~~L~l~--~n~l~~--l---p~~~~~L~~L~l~~n-~l~~-----l~~~~~ 131 (454)
T 1jl5_A 71 RQAHELELNNLGLSS------LPELPPHLESLVAS--CNSLTE--L---PELPQSLKSLLVDNN-NLKA-----LSDLPP 131 (454)
T ss_dssp HTCSEEECTTSCCSC------CCSCCTTCSEEECC--SSCCSS--C---CCCCTTCCEEECCSS-CCSC-----CCSCCT
T ss_pred cCCCEEEecCCcccc------CCCCcCCCCEEEcc--CCcCCc--c---ccccCCCcEEECCCC-ccCc-----ccCCCC
Confidence 347888888765432 11124688999998 444443 1 123478999999886 3332 111126
Q ss_pred CCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCC
Q 017279 159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPD 238 (374)
Q Consensus 159 ~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 238 (374)
+|++|+++++ .+.. ++. ...+++|++|+++++. +.. +....++|++|+++++. +.. +.. ...+++
T Consensus 132 ~L~~L~L~~n-~l~~--lp~-~~~l~~L~~L~l~~N~--l~~-----lp~~~~~L~~L~L~~n~-l~~--l~~-~~~l~~ 196 (454)
T 1jl5_A 132 LLEYLGVSNN-QLEK--LPE-LQNSSFLKIIDVDNNS--LKK-----LPDLPPSLEFIAAGNNQ-LEE--LPE-LQNLPF 196 (454)
T ss_dssp TCCEEECCSS-CCSS--CCC-CTTCTTCCEEECCSSC--CSC-----CCCCCTTCCEEECCSSC-CSS--CCC-CTTCTT
T ss_pred CCCEEECcCC-CCCC--Ccc-cCCCCCCCEEECCCCc--Ccc-----cCCCcccccEEECcCCc-CCc--Ccc-ccCCCC
Confidence 8999999875 4432 222 4567889999998854 332 11234589999998764 333 122 346788
Q ss_pred CCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCC
Q 017279 239 LRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTA 318 (374)
Q Consensus 239 L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 318 (374)
|+.|++++| .++. +....++|+.|++++|. ++. +. .+..+++|++|+++++ .
T Consensus 197 L~~L~l~~N-~l~~-----l~~~~~~L~~L~l~~n~-l~~--lp------------------~~~~l~~L~~L~l~~N-~ 248 (454)
T 1jl5_A 197 LTAIYADNN-SLKK-----LPDLPLSLESIVAGNNI-LEE--LP------------------ELQNLPFLTTIYADNN-L 248 (454)
T ss_dssp CCEEECCSS-CCSS-----CCCCCTTCCEEECCSSC-CSS--CC------------------CCTTCTTCCEEECCSS-C
T ss_pred CCEEECCCC-cCCc-----CCCCcCcccEEECcCCc-CCc--cc------------------ccCCCCCCCEEECCCC-c
Confidence 999999985 3431 11124578999998874 431 11 1235689999999984 5
Q ss_pred CCHHHHHHHHhhCCCccCCCCCceEEecCCc
Q 017279 319 LTPPAVQALCDTFPALHTCSGRHSLVMSGCL 349 (374)
Q Consensus 319 l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~ 349 (374)
++. +|. ..++|+.|++++|.
T Consensus 249 l~~---------l~~--~~~~L~~L~l~~N~ 268 (454)
T 1jl5_A 249 LKT---------LPD--LPPSLEALNVRDNY 268 (454)
T ss_dssp CSS---------CCS--CCTTCCEEECCSSC
T ss_pred CCc---------ccc--cccccCEEECCCCc
Confidence 552 222 13566666666663
No 117
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.10 E-value=4.8e-07 Score=72.68 Aligned_cols=131 Identities=15% Similarity=0.129 Sum_probs=66.6
Q ss_pred CCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCC
Q 017279 132 HDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCN 211 (374)
Q Consensus 132 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~ 211 (374)
++|++|+++++ .++. +..+....++|++|+++++ .+... .....+++|++|+++++. +... ...++..++
T Consensus 19 ~~L~~L~l~~n-~l~~--i~~~~~~~~~L~~L~Ls~N-~l~~~---~~l~~l~~L~~L~Ls~N~--l~~~-~~~~~~~l~ 88 (176)
T 1a9n_A 19 VRDRELDLRGY-KIPV--IENLGATLDQFDAIDFSDN-EIRKL---DGFPLLRRLKTLLVNNNR--ICRI-GEGLDQALP 88 (176)
T ss_dssp TSCEEEECTTS-CCCS--CCCGGGGTTCCSEEECCSS-CCCEE---CCCCCCSSCCEEECCSSC--CCEE-CSCHHHHCT
T ss_pred CCceEEEeeCC-CCch--hHHhhhcCCCCCEEECCCC-CCCcc---cccccCCCCCEEECCCCc--cccc-CcchhhcCC
Confidence 44555555554 2221 1122232346666666653 33321 122346677777777644 3211 112234577
Q ss_pred CCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHH--HHHHHHhcCCCCceEecCCCC
Q 017279 212 QLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDD--SVIALANGCPHLRSLGLYYCR 274 (374)
Q Consensus 212 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~--~l~~l~~~~~~L~~L~l~~~~ 274 (374)
+|+.|+++++. +++.........+++|+.|++++|. ++.. ....+...+|+|+.|+++.+.
T Consensus 89 ~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 89 DLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp TCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 78888887754 4331111123457888888888753 3311 111234458888888887764
No 118
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.07 E-value=9.1e-07 Score=84.32 Aligned_cols=190 Identities=15% Similarity=0.095 Sum_probs=100.1
Q ss_pred cCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCC
Q 017279 80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPN 159 (374)
Q Consensus 80 ~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 159 (374)
.++.|+++.+.... ++. .-+++|+.|+++ .+.++... ..+++|++|+++++ .++. +..+ ..+
T Consensus 60 ~L~~L~Ls~n~L~~---lp~--~l~~~L~~L~Ls--~N~l~~ip-----~~l~~L~~L~Ls~N-~l~~--ip~l---~~~ 121 (571)
T 3cvr_A 60 QFSELQLNRLNLSS---LPD--NLPPQITVLEIT--QNALISLP-----ELPASLEYLDACDN-RLST--LPEL---PAS 121 (571)
T ss_dssp TCSEEECCSSCCSC---CCS--CCCTTCSEEECC--SSCCSCCC-----CCCTTCCEEECCSS-CCSC--CCCC---CTT
T ss_pred CccEEEeCCCCCCc---cCH--hHcCCCCEEECc--CCCCcccc-----cccCCCCEEEccCC-CCCC--cchh---hcC
Confidence 57778877654321 111 013678888887 44444211 33677888888776 3332 1111 127
Q ss_pred CcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCC
Q 017279 160 LTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDL 239 (374)
Q Consensus 160 L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 239 (374)
|++|+++++ .++. ++. .+++|+.|+++++. ++. +.. .+++|+.|+++++. ++. +.. .. ++|
T Consensus 122 L~~L~Ls~N-~l~~--lp~---~l~~L~~L~Ls~N~--l~~--lp~---~l~~L~~L~Ls~N~-L~~--lp~-l~--~~L 182 (571)
T 3cvr_A 122 LKHLDVDNN-QLTM--LPE---LPALLEYINADNNQ--LTM--LPE---LPTSLEVLSVRNNQ-LTF--LPE-LP--ESL 182 (571)
T ss_dssp CCEEECCSS-CCSC--CCC---CCTTCCEEECCSSC--CSC--CCC---CCTTCCEEECCSSC-CSC--CCC-CC--TTC
T ss_pred CCEEECCCC-cCCC--CCC---cCccccEEeCCCCc--cCc--CCC---cCCCcCEEECCCCC-CCC--cch-hh--CCC
Confidence 888888764 3332 221 46778888887754 322 111 46778888887754 332 111 11 678
Q ss_pred CeeecCCCCCCCHHH-H-HHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCC
Q 017279 240 RSLDLCGCVCITDDS-V-IALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCT 317 (374)
Q Consensus 240 ~~L~l~~~~~l~~~~-l-~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 317 (374)
+.|++++| .++... + ..+....+.|+.|++++|. ++. .+..+..+++|+.|++++ +
T Consensus 183 ~~L~Ls~N-~L~~lp~~~~~L~~~~~~L~~L~Ls~N~-l~~-------------------lp~~l~~l~~L~~L~L~~-N 240 (571)
T 3cvr_A 183 EALDVSTN-LLESLPAVPVRNHHSEETEIFFRCRENR-ITH-------------------IPENILSLDPTCTIILED-N 240 (571)
T ss_dssp CEEECCSS-CCSSCCCCC--------CCEEEECCSSC-CCC-------------------CCGGGGGSCTTEEEECCS-S
T ss_pred CEEECcCC-CCCchhhHHHhhhcccccceEEecCCCc-cee-------------------cCHHHhcCCCCCEEEeeC-C
Confidence 88888874 443100 0 0111112233777777764 441 011123457888888888 5
Q ss_pred CCCHHHHHHHH
Q 017279 318 ALTPPAVQALC 328 (374)
Q Consensus 318 ~l~~~~l~~l~ 328 (374)
.++......+.
T Consensus 241 ~l~~~~p~~l~ 251 (571)
T 3cvr_A 241 PLSSRIRESLS 251 (571)
T ss_dssp SCCHHHHHHHH
T ss_pred cCCCcCHHHHH
Confidence 67766555554
No 119
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.05 E-value=4.5e-05 Score=61.60 Aligned_cols=106 Identities=15% Similarity=0.186 Sum_probs=84.4
Q ss_pred HHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhc---CCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccc
Q 017279 226 DVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANG---CPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGR 302 (374)
Q Consensus 226 ~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~---~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~ 302 (374)
+..+..+...-+.|++|++++++.+.+++...+.+. -..|+.|+|++|. +.+.+...++....
T Consensus 30 ~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~------------- 95 (197)
T 1pgv_A 30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIE------------- 95 (197)
T ss_dssp HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHH-------------
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHh-------------
Confidence 345667777788999999998658999888777765 4579999999996 99998887775421
Q ss_pred cCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCcc
Q 017279 303 YDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLN 350 (374)
Q Consensus 303 ~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~ 350 (374)
.-+.|++|+|++ +.+++.+...++..+. .-+.|+.|+|++|..
T Consensus 96 -~N~tL~~L~L~~-N~Ig~~Ga~ala~aL~---~N~tL~~L~L~n~~~ 138 (197)
T 1pgv_A 96 -TSPSLRVLNVES-NFLTPELLARLLRSTL---VTQSIVEFKADNQRQ 138 (197)
T ss_dssp -HCSSCCEEECCS-SBCCHHHHHHHHHHTT---TTCCCSEEECCCCSS
T ss_pred -cCCccCeEecCC-CcCCHHHHHHHHHHHh---hCCceeEEECCCCcC
Confidence 127899999999 7899999999987754 446799999998753
No 120
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.03 E-value=8.6e-07 Score=73.23 Aligned_cols=149 Identities=16% Similarity=0.067 Sum_probs=85.6
Q ss_pred CCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcC
Q 017279 157 CPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGC 236 (374)
Q Consensus 157 ~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 236 (374)
.++|++|+++++ .+.... ......+++|++|+++++. +... ....+..+++|++|+++++. ++... ......+
T Consensus 27 ~~~l~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~--l~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~~-~~~~~~l 99 (208)
T 2o6s_A 27 PAQTTYLDLETN-SLKSLP-NGVFDELTSLTQLYLGGNK--LQSL-PNGVFNKLTSLTYLNLSTNQ-LQSLP-NGVFDKL 99 (208)
T ss_dssp CTTCSEEECCSS-CCCCCC-TTTTTTCTTCSEEECCSSC--CCCC-CTTTTTTCTTCCEEECCSSC-CCCCC-TTTTTTC
T ss_pred CCCCcEEEcCCC-ccCcCC-hhhhcccccCcEEECCCCc--cCcc-ChhhcCCCCCcCEEECCCCc-CCccC-HhHhcCc
Confidence 467899999874 443211 1123457889999988754 3311 11223457888888888753 33211 1123457
Q ss_pred CCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCC
Q 017279 237 PDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQC 316 (374)
Q Consensus 237 ~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 316 (374)
++|++|+++++ .++... ......+++|+.|+++++. ++..... .+..+++|++|+++++
T Consensus 100 ~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~l~~N~-l~~~~~~------------------~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 100 TQLKELALNTN-QLQSLP-DGVFDKLTQLKDLRLYQNQ-LKSVPDG------------------VFDRLTSLQYIWLHDN 158 (208)
T ss_dssp TTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC-CSCCCTT------------------TTTTCTTCCEEECCSC
T ss_pred cCCCEEEcCCC-cCcccC-HhHhccCCcCCEEECCCCc-cceeCHH------------------HhccCCCccEEEecCC
Confidence 88888888884 444211 1122347888888888774 4321100 1224578888888874
Q ss_pred CCCCHHHHHHHHhhCCCccCCCCCceEEecCC
Q 017279 317 TALTPPAVQALCDTFPALHTCSGRHSLVMSGC 348 (374)
Q Consensus 317 ~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C 348 (374)
.+. ..|++|+.|+++++
T Consensus 159 -~~~--------------~~~~~l~~L~~~~n 175 (208)
T 2o6s_A 159 -PWD--------------CTCPGIRYLSEWIN 175 (208)
T ss_dssp -CBC--------------CCTTTTHHHHHHHH
T ss_pred -Cee--------------cCCCCHHHHHHHHH
Confidence 222 45667777766654
No 121
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.02 E-value=1.1e-07 Score=79.48 Aligned_cols=109 Identities=17% Similarity=0.151 Sum_probs=54.5
Q ss_pred CCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCC
Q 017279 158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCP 237 (374)
Q Consensus 158 ~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 237 (374)
+.+++|+++++ .+...........+++|++|+++++. +.... ...+..+++|++|+++++. ++... ......++
T Consensus 32 ~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~--i~~i~-~~~~~~l~~L~~L~Ls~N~-l~~~~-~~~~~~l~ 105 (220)
T 2v70_A 32 QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNK--ITDIE-EGAFEGASGVNEILLTSNR-LENVQ-HKMFKGLE 105 (220)
T ss_dssp TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSC--CCEEC-TTTTTTCTTCCEEECCSSC-CCCCC-GGGGTTCS
T ss_pred CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCc--CCEEC-HHHhCCCCCCCEEECCCCc-cCccC-HhHhcCCc
Confidence 45677877763 34322111123456777777777643 22111 1123346777777776643 32211 11223567
Q ss_pred CCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCC
Q 017279 238 DLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCR 274 (374)
Q Consensus 238 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~ 274 (374)
+|++|+++++ .++......+ ..+++|+.|+++++.
T Consensus 106 ~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~L~~N~ 140 (220)
T 2v70_A 106 SLKTLMLRSN-RITCVGNDSF-IGLSSVRLLSLYDNQ 140 (220)
T ss_dssp SCCEEECTTS-CCCCBCTTSS-TTCTTCSEEECTTSC
T ss_pred CCCEEECCCC-cCCeECHhHc-CCCccCCEEECCCCc
Confidence 7777777774 3332111111 235667777776653
No 122
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.94 E-value=7.8e-07 Score=74.23 Aligned_cols=108 Identities=19% Similarity=0.098 Sum_probs=50.9
Q ss_pred CCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCC
Q 017279 158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCP 237 (374)
Q Consensus 158 ~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 237 (374)
++|+.|+++++ .+..... ..+..+++|++|+++++. +.... ...+..+++|++|+++++. ++... ......++
T Consensus 32 ~~l~~L~l~~n-~i~~i~~-~~~~~l~~L~~L~Ls~N~--i~~~~-~~~~~~l~~L~~L~Ls~N~-l~~l~-~~~f~~l~ 104 (220)
T 2v9t_B 32 ETITEIRLEQN-TIKVIPP-GAFSPYKKLRRIDLSNNQ--ISELA-PDAFQGLRSLNSLVLYGNK-ITELP-KSLFEGLF 104 (220)
T ss_dssp TTCCEEECCSS-CCCEECT-TSSTTCTTCCEEECCSSC--CCEEC-TTTTTTCSSCCEEECCSSC-CCCCC-TTTTTTCT
T ss_pred cCCCEEECCCC-cCCCcCH-hHhhCCCCCCEEECCCCc--CCCcC-HHHhhCCcCCCEEECCCCc-CCccC-HhHccCCC
Confidence 46777777763 3332111 112346677777777643 22110 1122345667777776543 32110 11223456
Q ss_pred CCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCC
Q 017279 238 DLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCR 274 (374)
Q Consensus 238 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~ 274 (374)
+|+.|+++++ .++..... ....+++|+.|+++++.
T Consensus 105 ~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N~ 139 (220)
T 2v9t_B 105 SLQLLLLNAN-KINCLRVD-AFQDLHNLNLLSLYDNK 139 (220)
T ss_dssp TCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSSC
T ss_pred CCCEEECCCC-CCCEeCHH-HcCCCCCCCEEECCCCc
Confidence 6666666663 33321111 11235666666666553
No 123
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.94 E-value=4.5e-07 Score=88.00 Aligned_cols=12 Identities=50% Similarity=0.620 Sum_probs=6.4
Q ss_pred CCCCCEEecCCC
Q 017279 131 CHDLQDLDLSKS 142 (374)
Q Consensus 131 ~~~L~~L~l~~~ 142 (374)
+++|++|+++++
T Consensus 75 l~~L~~L~Ls~N 86 (635)
T 4g8a_A 75 FPELQVLDLSRC 86 (635)
T ss_dssp CTTCCEEECTTC
T ss_pred CCCCCEEECCCC
Confidence 455555555554
No 124
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.94 E-value=2.5e-06 Score=81.25 Aligned_cols=186 Identities=16% Similarity=0.119 Sum_probs=115.5
Q ss_pred CCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcC
Q 017279 104 LTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFC 183 (374)
Q Consensus 104 ~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~ 183 (374)
+.+++.|+++ .+.++.. .. ..+++|++|+++++ .++. +. ..+++|++|+++++ .++. ++. . .
T Consensus 58 ~~~L~~L~Ls--~n~L~~l-p~---~l~~~L~~L~Ls~N-~l~~--ip---~~l~~L~~L~Ls~N-~l~~--ip~-l--~ 119 (571)
T 3cvr_A 58 INQFSELQLN--RLNLSSL-PD---NLPPQITVLEITQN-ALIS--LP---ELPASLEYLDACDN-RLST--LPE-L--P 119 (571)
T ss_dssp HTTCSEEECC--SSCCSCC-CS---CCCTTCSEEECCSS-CCSC--CC---CCCTTCCEEECCSS-CCSC--CCC-C--C
T ss_pred cCCccEEEeC--CCCCCcc-CH---hHcCCCCEEECcCC-CCcc--cc---cccCCCCEEEccCC-CCCC--cch-h--h
Confidence 3589999998 4444431 11 12478999999987 4442 22 34789999999985 4443 222 1 2
Q ss_pred CCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCC
Q 017279 184 RKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCP 263 (374)
Q Consensus 184 ~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~ 263 (374)
.+|++|+++++. ++. +.. .+++|+.|+++++. ++. +. ..+++|+.|++++| .++. +..+ .+
T Consensus 120 ~~L~~L~Ls~N~--l~~--lp~---~l~~L~~L~Ls~N~-l~~--lp---~~l~~L~~L~Ls~N-~L~~--lp~l---~~ 180 (571)
T 3cvr_A 120 ASLKHLDVDNNQ--LTM--LPE---LPALLEYINADNNQ-LTM--LP---ELPTSLEVLSVRNN-QLTF--LPEL---PE 180 (571)
T ss_dssp TTCCEEECCSSC--CSC--CCC---CCTTCCEEECCSSC-CSC--CC---CCCTTCCEEECCSS-CCSC--CCCC---CT
T ss_pred cCCCEEECCCCc--CCC--CCC---cCccccEEeCCCCc-cCc--CC---CcCCCcCEEECCCC-CCCC--cchh---hC
Confidence 389999999854 333 222 57899999998864 433 11 15689999999995 4543 2221 27
Q ss_pred CCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCC-CccCCCCCce
Q 017279 264 HLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFP-ALHTCSGRHS 342 (374)
Q Consensus 264 ~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~-~l~~~~~L~~ 342 (374)
+|+.|+++++. ++. +..+... -....+.|+.|++++ +.++ .+| .+..+++|+.
T Consensus 181 ~L~~L~Ls~N~-L~~--lp~~~~~-------------L~~~~~~L~~L~Ls~-N~l~---------~lp~~l~~l~~L~~ 234 (571)
T 3cvr_A 181 SLEALDVSTNL-LES--LPAVPVR-------------NHHSEETEIFFRCRE-NRIT---------HIPENILSLDPTCT 234 (571)
T ss_dssp TCCEEECCSSC-CSS--CCCCC---------------------CCEEEECCS-SCCC---------CCCGGGGGSCTTEE
T ss_pred CCCEEECcCCC-CCc--hhhHHHh-------------hhcccccceEEecCC-Ccce---------ecCHHHhcCCCCCE
Confidence 89999999885 442 0000000 001123459999998 4676 234 2556899999
Q ss_pred EEecCCccccc
Q 017279 343 LVMSGCLNLTS 353 (374)
Q Consensus 343 L~ls~C~~l~~ 353 (374)
|++++|+ ++.
T Consensus 235 L~L~~N~-l~~ 244 (571)
T 3cvr_A 235 IILEDNP-LSS 244 (571)
T ss_dssp EECCSSS-CCH
T ss_pred EEeeCCc-CCC
Confidence 9999996 544
No 125
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.93 E-value=2.4e-08 Score=96.98 Aligned_cols=134 Identities=17% Similarity=0.070 Sum_probs=69.9
Q ss_pred CCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcC
Q 017279 183 CRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGC 262 (374)
Q Consensus 183 ~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~ 262 (374)
+++++.++++.+.. .. ........++.|+.|+++++.... .........+++|+.|++++| .++...- ....++
T Consensus 444 l~~l~~l~ls~n~l--~~-~~~~~~~~~~~L~~L~Ls~N~~~~-~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~-~~f~~l 517 (635)
T 4g8a_A 444 LRNLIYLDISHTHT--RV-AFNGIFNGLSSLEVLKMAGNSFQE-NFLPDIFTELRNLTFLDLSQC-QLEQLSP-TAFNSL 517 (635)
T ss_dssp CTTCCEEECTTSCC--EE-CCTTTTTTCTTCCEEECTTCEEGG-GEECSCCTTCTTCCEEECTTS-CCCEECT-TTTTTC
T ss_pred cccccccccccccc--cc-ccccccccchhhhhhhhhhccccc-ccCchhhhhccccCEEECCCC-ccCCcCh-HHHcCC
Confidence 45566666555321 11 111223345677777776643111 101112335677888888875 3432111 122347
Q ss_pred CCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCC-CCCc
Q 017279 263 PHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTC-SGRH 341 (374)
Q Consensus 263 ~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~-~~L~ 341 (374)
++|+.|+++++. ++.-. ...+..+++|++|++++ +.++.... ..+..+ ++|+
T Consensus 518 ~~L~~L~Ls~N~-l~~l~------------------~~~~~~l~~L~~L~Ls~-N~l~~~~~-------~~l~~l~~~L~ 570 (635)
T 4g8a_A 518 SSLQVLNMSHNN-FFSLD------------------TFPYKCLNSLQVLDYSL-NHIMTSKK-------QELQHFPSSLA 570 (635)
T ss_dssp TTCCEEECTTSC-CCBCC------------------CGGGTTCTTCCEEECTT-SCCCBCCS-------SCTTCCCTTCC
T ss_pred CCCCEEECCCCc-CCCCC------------------hhHHhCCCCCCEEECCC-CcCCCCCH-------HHHHhhhCcCC
Confidence 778888887764 33210 11133568899999988 45653111 123444 5789
Q ss_pred eEEecCCc
Q 017279 342 SLVMSGCL 349 (374)
Q Consensus 342 ~L~ls~C~ 349 (374)
.|++++++
T Consensus 571 ~L~L~~Np 578 (635)
T 4g8a_A 571 FLNLTQND 578 (635)
T ss_dssp EEECTTCC
T ss_pred EEEeeCCC
Confidence 99998865
No 126
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.92 E-value=1.4e-07 Score=85.11 Aligned_cols=134 Identities=21% Similarity=0.065 Sum_probs=65.8
Q ss_pred CCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCC
Q 017279 132 HDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCN 211 (374)
Q Consensus 132 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~ 211 (374)
+.++.|+++++ .++......+...+++|++|+|+++ .+..... ..+..+++|++|+|+++. +.... ...+..++
T Consensus 39 ~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~-~~~~~l~~L~~L~Ls~N~--l~~~~-~~~~~~l~ 112 (361)
T 2xot_A 39 SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISS-EAFVPVPNLRYLDLSSNH--LHTLD-EFLFSDLQ 112 (361)
T ss_dssp TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSSC--CCEEC-TTTTTTCT
T ss_pred CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCC-cCCccCh-hhccCCCCCCEEECCCCc--CCcCC-HHHhCCCc
Confidence 45788888876 3332111111114677888888763 3332111 112346777777777643 22110 11233567
Q ss_pred CCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHH--HhcCCCCceEecCCCC
Q 017279 212 QLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIAL--ANGCPHLRSLGLYYCR 274 (374)
Q Consensus 212 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l--~~~~~~L~~L~l~~~~ 274 (374)
+|+.|+++++. +.... ......+++|+.|+++++ .++......+ ...+++|+.|+++++.
T Consensus 113 ~L~~L~L~~N~-i~~~~-~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 113 ALEVLLLYNNH-IVVVD-RNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp TCCEEECCSSC-CCEEC-TTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred CCCEEECCCCc-ccEEC-HHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 77777777643 33211 111234667777777764 3332111101 0235667777766653
No 127
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.90 E-value=2.2e-08 Score=90.03 Aligned_cols=223 Identities=14% Similarity=0.108 Sum_probs=98.6
Q ss_pred CceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q 017279 81 LTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNL 160 (374)
Q Consensus 81 l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 160 (374)
+++|+++++... ......+..+++|++|+++ .+.+....-......+++++++.+..+..+..-. ......+++|
T Consensus 32 l~~L~Ls~N~i~--~i~~~~f~~l~~L~~L~Ls--~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~-~~~f~~l~~L 106 (350)
T 4ay9_X 32 AIELRFVLTKLR--VIQKGAFSGFGDLEKIEIS--QNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN-PEAFQNLPNL 106 (350)
T ss_dssp CSEEEEESCCCS--EECTTSSTTCTTCCEEEEE--CCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC-TTSBCCCTTC
T ss_pred CCEEEccCCcCC--CcCHHHHcCCCCCCEEECc--CCCCCCccChhHhhcchhhhhhhcccCCcccccC-chhhhhcccc
Confidence 566666654432 1111234566777777777 2222111000111234555543332222222110 0112336777
Q ss_pred cEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCC
Q 017279 161 TRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLR 240 (374)
Q Consensus 161 ~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 240 (374)
++|+++++ .+....-. ......++..|++.++.. +..-....+......++.|+++++. ++.. ..-.-..++|+
T Consensus 107 ~~L~l~~n-~l~~~~~~-~~~~~~~l~~l~l~~~~~-i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i--~~~~f~~~~L~ 180 (350)
T 4ay9_X 107 QYLLISNT-GIKHLPDV-HKIHSLQKVLLDIQDNIN-IHTIERNSFVGLSFESVILWLNKNG-IQEI--HNSAFNGTQLD 180 (350)
T ss_dssp CEEEEEEE-CCSSCCCC-TTCCBSSCEEEEEESCTT-CCEECTTSSTTSBSSCEEEECCSSC-CCEE--CTTSSTTEEEE
T ss_pred cccccccc-ccccCCch-hhcccchhhhhhhccccc-cccccccchhhcchhhhhhcccccc-ccCC--Chhhccccchh
Confidence 77777763 22211000 011234556666654322 1110001111122357777777643 3321 11111235677
Q ss_pred eeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCC
Q 017279 241 SLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALT 320 (374)
Q Consensus 241 ~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 320 (374)
.|++.+++.++... ......+++|+.|+++++. ++. +... .+.+|+.|.+.++.+++
T Consensus 181 ~l~l~~~n~l~~i~-~~~f~~l~~L~~LdLs~N~-l~~-----lp~~----------------~~~~L~~L~~l~~~~l~ 237 (350)
T 4ay9_X 181 ELNLSDNNNLEELP-NDVFHGASGPVILDISRTR-IHS-----LPSY----------------GLENLKKLRARSTYNLK 237 (350)
T ss_dssp EEECTTCTTCCCCC-TTTTTTEECCSEEECTTSC-CCC-----CCSS----------------SCTTCCEEECTTCTTCC
T ss_pred HHhhccCCcccCCC-HHHhccCcccchhhcCCCC-cCc-----cChh----------------hhccchHhhhccCCCcC
Confidence 77777655443211 1122346778888887764 432 1000 23556666655554443
Q ss_pred HHHHHHHHhhCCCccCCCCCceEEec
Q 017279 321 PPAVQALCDTFPALHTCSGRHSLVMS 346 (374)
Q Consensus 321 ~~~l~~l~~~~~~l~~~~~L~~L~ls 346 (374)
.+|.+..+++|+.++++
T Consensus 238 ---------~lP~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 238 ---------KLPTLEKLVALMEASLT 254 (350)
T ss_dssp ---------CCCCTTTCCSCCEEECS
T ss_pred ---------cCCCchhCcChhhCcCC
Confidence 35555666666666664
No 128
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.86 E-value=8.1e-07 Score=72.80 Aligned_cols=128 Identities=19% Similarity=0.218 Sum_probs=76.5
Q ss_pred HhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHh
Q 017279 129 NSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGR 208 (374)
Q Consensus 129 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~ 208 (374)
..+++|++|+++++ .++. +..+ ..+++|++|+++++ .+.. ++.....+++|++|+++++. +.. +.. ..
T Consensus 45 ~~l~~L~~L~ls~n-~l~~--l~~~-~~l~~L~~L~l~~n-~l~~--l~~~~~~~~~L~~L~L~~N~--l~~--l~~-~~ 112 (198)
T 1ds9_A 45 STLKACKHLALSTN-NIEK--ISSL-SGMENLRILSLGRN-LIKK--IENLDAVADTLEELWISYNQ--IAS--LSG-IE 112 (198)
T ss_dssp HHTTTCSEEECSEE-EESC--CCCH-HHHTTCCEEEEEEE-EECS--CSSHHHHHHHCSEEEEEEEE--CCC--HHH-HH
T ss_pred hcCCCCCEEECCCC-CCcc--cccc-ccCCCCCEEECCCC-Cccc--ccchhhcCCcCCEEECcCCc--CCc--CCc-cc
Confidence 34778888888775 2322 1122 23678888888764 3331 22233345788888888754 333 222 33
Q ss_pred cCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHH---------HHHHHHhcCCCCceEec
Q 017279 209 NCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDD---------SVIALANGCPHLRSLGL 270 (374)
Q Consensus 209 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~---------~l~~l~~~~~~L~~L~l 270 (374)
.+++|+.|+++++. +++.........+++|++|++++| .++.. ....+...+++|+.|+-
T Consensus 113 ~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~ 181 (198)
T 1ds9_A 113 KLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGN-PLYNDYKENNATSEYRIEVVKRLPNLKKLDG 181 (198)
T ss_dssp HHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSC-HHHHHHHTTTTHHHHHHHHHHHCSSCSEECC
T ss_pred cCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCC-ccccccccccchHHHHHHHHHhCCCcEEECC
Confidence 46788888888754 554322233456888999999885 34322 12233456899999873
No 129
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.82 E-value=7.8e-07 Score=74.73 Aligned_cols=61 Identities=11% Similarity=-0.023 Sum_probs=28.3
Q ss_pred cCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCC
Q 017279 209 NCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCR 274 (374)
Q Consensus 209 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~ 274 (374)
.+++|+.|+++++. +.. +......+++|+.|+++++ .++.... .....+++|+.|++.+++
T Consensus 110 ~l~~L~~L~Ls~N~-l~~--lp~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 110 RLVHLKELFMCCNK-LTE--LPRGIERLTHLTHLALDQN-QLKSIPH-GAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TCTTCCEEECCSSC-CCS--CCTTGGGCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECTTSC
T ss_pred cchhhCeEeccCCc-ccc--cCcccccCCCCCEEECCCC-cCCccCH-HHHhCCCCCCEEEeeCCC
Confidence 35555666555532 221 1111234566666666663 3331111 122235666666666654
No 130
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.82 E-value=8.5e-07 Score=72.69 Aligned_cols=106 Identities=16% Similarity=0.151 Sum_probs=73.1
Q ss_pred hcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHh
Q 017279 155 HGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAY 234 (374)
Q Consensus 155 ~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 234 (374)
..+++|++|+++++ .+.. ++ ....+++|+.|+++++. +. .+......+++|+.|+++++. ++.. .. ..
T Consensus 45 ~~l~~L~~L~ls~n-~l~~--l~-~~~~l~~L~~L~l~~n~--l~--~l~~~~~~~~~L~~L~L~~N~-l~~l--~~-~~ 112 (198)
T 1ds9_A 45 STLKACKHLALSTN-NIEK--IS-SLSGMENLRILSLGRNL--IK--KIENLDAVADTLEELWISYNQ-IASL--SG-IE 112 (198)
T ss_dssp HHTTTCSEEECSEE-EESC--CC-CHHHHTTCCEEEEEEEE--EC--SCSSHHHHHHHCSEEEEEEEE-CCCH--HH-HH
T ss_pred hcCCCCCEEECCCC-CCcc--cc-ccccCCCCCEEECCCCC--cc--cccchhhcCCcCCEEECcCCc-CCcC--Cc-cc
Confidence 34899999999874 3333 22 23357999999999865 33 233344456899999999864 5542 23 33
Q ss_pred cCCCCCeeecCCCCCCCHH-HHHHHHhcCCCCceEecCCCC
Q 017279 235 GCPDLRSLDLCGCVCITDD-SVIALANGCPHLRSLGLYYCR 274 (374)
Q Consensus 235 ~~~~L~~L~l~~~~~l~~~-~l~~l~~~~~~L~~L~l~~~~ 274 (374)
.+++|+.|++++| .++.. .+..+ ..+++|+.|+++++.
T Consensus 113 ~l~~L~~L~l~~N-~i~~~~~~~~l-~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 113 KLVNLRVLYMSNN-KITNWGEIDKL-AALDKLEDLLLAGNP 151 (198)
T ss_dssp HHHHSSEEEESEE-ECCCHHHHHHH-TTTTTCSEEEECSCH
T ss_pred cCCCCCEEECCCC-cCCchhHHHHH-hcCCCCCEEEecCCc
Confidence 5789999999995 56543 33333 459999999999885
No 131
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.81 E-value=2.5e-08 Score=89.72 Aligned_cols=219 Identities=13% Similarity=0.020 Sum_probs=116.8
Q ss_pred CCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCC
Q 017279 105 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCR 184 (374)
Q Consensus 105 ~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~ 184 (374)
++++.|+++ .+.++..... ....+++|++|+++++...+... ......+++++++....+..+.... +..+..++
T Consensus 30 ~~l~~L~Ls--~N~i~~i~~~-~f~~l~~L~~L~Ls~N~i~~~i~-~~~f~~L~~l~~~l~~~~N~l~~l~-~~~f~~l~ 104 (350)
T 4ay9_X 30 RNAIELRFV--LTKLRVIQKG-AFSGFGDLEKIEISQNDVLEVIE-ADVFSNLPKLHEIRIEKANNLLYIN-PEAFQNLP 104 (350)
T ss_dssp TTCSEEEEE--SCCCSEECTT-SSTTCTTCCEEEEECCTTCCEEC-TTSBCSCTTCCEEEEEEETTCCEEC-TTSBCCCT
T ss_pred CCCCEEEcc--CCcCCCcCHH-HHcCCCCCCEEECcCCCCCCccC-hhHhhcchhhhhhhcccCCcccccC-chhhhhcc
Confidence 679999999 5555432111 12347899999999874322100 0112235666665443333433211 11234578
Q ss_pred CCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCC
Q 017279 185 KLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPH 264 (374)
Q Consensus 185 ~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~ 264 (374)
+|++|+++++. +.... ........++..|++.++..+.......+......++.|+++++ .++... .... ...+
T Consensus 105 ~L~~L~l~~n~--l~~~~-~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~-~~~f-~~~~ 178 (350)
T 4ay9_X 105 NLQYLLISNTG--IKHLP-DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIH-NSAF-NGTQ 178 (350)
T ss_dssp TCCEEEEEEEC--CSSCC-CCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEEC-TTSS-TTEE
T ss_pred ccccccccccc--cccCC-chhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccCCC-hhhc-cccc
Confidence 99999998744 22110 00111345677777765443332111111212246888999984 454211 1111 2467
Q ss_pred CceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEE
Q 017279 265 LRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLV 344 (374)
Q Consensus 265 L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ 344 (374)
|+.|.+.++..++.-... .+..+++|++|++++ +.++ .+|. ..+.+|+.|.
T Consensus 179 L~~l~l~~~n~l~~i~~~------------------~f~~l~~L~~LdLs~-N~l~---------~lp~-~~~~~L~~L~ 229 (350)
T 4ay9_X 179 LDELNLSDNNNLEELPND------------------VFHGASGPVILDISR-TRIH---------SLPS-YGLENLKKLR 229 (350)
T ss_dssp EEEEECTTCTTCCCCCTT------------------TTTTEECCSEEECTT-SCCC---------CCCS-SSCTTCCEEE
T ss_pred hhHHhhccCCcccCCCHH------------------HhccCcccchhhcCC-CCcC---------ccCh-hhhccchHhh
Confidence 888888765544321111 123458999999999 4666 2332 2467788888
Q ss_pred ecCCcccccccceecCccc
Q 017279 345 MSGCLNLTSVHCVCAGQSH 363 (374)
Q Consensus 345 ls~C~~l~~~~~~~~~~~~ 363 (374)
+.+|.+++..--...+.++
T Consensus 230 ~l~~~~l~~lP~l~~l~~L 248 (350)
T 4ay9_X 230 ARSTYNLKKLPTLEKLVAL 248 (350)
T ss_dssp CTTCTTCCCCCCTTTCCSC
T ss_pred hccCCCcCcCCCchhCcCh
Confidence 8888776654433333333
No 132
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.78 E-value=6e-07 Score=74.94 Aligned_cols=134 Identities=16% Similarity=0.108 Sum_probs=84.0
Q ss_pred CCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcC
Q 017279 131 CHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNC 210 (374)
Q Consensus 131 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~ 210 (374)
.+.+++|+++++ .++..........+++|++|+++++ .++.... ..+..+++|++|+++++. +.... ...+..+
T Consensus 31 ~~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~-~~~~~l~~L~~L~Ls~N~--l~~~~-~~~~~~l 104 (220)
T 2v70_A 31 PQYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNN-KITDIEE-GAFEGASGVNEILLTSNR--LENVQ-HKMFKGL 104 (220)
T ss_dssp CTTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSSC--CCCCC-GGGGTTC
T ss_pred CCCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCC-cCCEECH-HHhCCCCCCCEEECCCCc--cCccC-HhHhcCC
Confidence 356899999997 3433211122345899999999984 4443211 123468999999999855 33211 2234568
Q ss_pred CCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCC
Q 017279 211 NQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCR 274 (374)
Q Consensus 211 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~ 274 (374)
++|++|+++++. +.... ......+++|+.|+++++ .++..... ....+++|+.|+++++.
T Consensus 105 ~~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 105 ESLKTLMLRSNR-ITCVG-NDSFIGLSSVRLLSLYDN-QITTVAPG-AFDTLHSLSTLNLLANP 164 (220)
T ss_dssp SSCCEEECTTSC-CCCBC-TTSSTTCTTCSEEECTTS-CCCCBCTT-TTTTCTTCCEEECCSCC
T ss_pred cCCCEEECCCCc-CCeEC-HhHcCCCccCCEEECCCC-cCCEECHH-HhcCCCCCCEEEecCcC
Confidence 999999999864 43321 112346799999999995 45422111 22347888899888765
No 133
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.77 E-value=5e-07 Score=81.50 Aligned_cols=158 Identities=22% Similarity=0.161 Sum_probs=82.8
Q ss_pred CCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCC
Q 017279 105 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCR 184 (374)
Q Consensus 105 ~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~ 184 (374)
+.++.|+++ .+.++......+...+++|++|+++++ .++......+ ..+++|++|+|+++ .+.... ...+..++
T Consensus 39 ~~l~~L~Ls--~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~-~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~ 112 (361)
T 2xot_A 39 SYTALLDLS--HNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAF-VPVPNLRYLDLSSN-HLHTLD-EFLFSDLQ 112 (361)
T ss_dssp TTCSEEECC--SSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSS-CCCEEC-TTTTTTCT
T ss_pred CCCCEEECC--CCCCCccChhhhhhcccccCEEECCCC-cCCccChhhc-cCCCCCCEEECCCC-cCCcCC-HHHhCCCc
Confidence 456777777 444443222111114677888888775 3332111111 23678888888774 343211 11233577
Q ss_pred CCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHH--HhcCCCCCeeecCCCCCCCHHHHHHHHhcC
Q 017279 185 KLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNL--AYGCPDLRSLDLCGCVCITDDSVIALANGC 262 (374)
Q Consensus 185 ~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l--~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~ 262 (374)
+|++|+|+++. +.... ...+..+++|+.|+++++. ++......+ ...+++|+.|+++++ .++......+. .+
T Consensus 113 ~L~~L~L~~N~--i~~~~-~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~-~l 186 (361)
T 2xot_A 113 ALEVLLLYNNH--IVVVD-RNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLTDLQ-KL 186 (361)
T ss_dssp TCCEEECCSSC--CCEEC-TTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSS-CCCCCCHHHHH-HS
T ss_pred CCCEEECCCCc--ccEEC-HHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHHHhh-hc
Confidence 88888888754 32111 1123457788888887753 332111111 134788888888884 45432222333 35
Q ss_pred CC--CceEecCCCC
Q 017279 263 PH--LRSLGLYYCR 274 (374)
Q Consensus 263 ~~--L~~L~l~~~~ 274 (374)
+. |+.|++.+++
T Consensus 187 ~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 187 PAWVKNGLYLHNNP 200 (361)
T ss_dssp CHHHHTTEECCSSC
T ss_pred cHhhcceEEecCCC
Confidence 55 4778888765
No 134
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.74 E-value=8.7e-07 Score=73.96 Aligned_cols=133 Identities=15% Similarity=0.081 Sum_probs=83.6
Q ss_pred CCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcC
Q 017279 131 CHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNC 210 (374)
Q Consensus 131 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~ 210 (374)
.++++.|+++++ .++..... ....+++|++|+++++ .+.... +..+..+++|++|+++++. +..- ....+..+
T Consensus 31 ~~~l~~L~l~~n-~i~~i~~~-~~~~l~~L~~L~Ls~N-~i~~~~-~~~~~~l~~L~~L~Ls~N~--l~~l-~~~~f~~l 103 (220)
T 2v9t_B 31 PETITEIRLEQN-TIKVIPPG-AFSPYKKLRRIDLSNN-QISELA-PDAFQGLRSLNSLVLYGNK--ITEL-PKSLFEGL 103 (220)
T ss_dssp CTTCCEEECCSS-CCCEECTT-SSTTCTTCCEEECCSS-CCCEEC-TTTTTTCSSCCEEECCSSC--CCCC-CTTTTTTC
T ss_pred CcCCCEEECCCC-cCCCcCHh-HhhCCCCCCEEECCCC-cCCCcC-HHHhhCCcCCCEEECCCCc--CCcc-CHhHccCC
Confidence 368999999986 34321111 1234789999999984 443211 1223458999999999854 3311 12234568
Q ss_pred CCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCC
Q 017279 211 NQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCR 274 (374)
Q Consensus 211 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~ 274 (374)
++|+.|+++++. ++... ......+++|+.|+++++ .++.... .....+++|+.|+++++.
T Consensus 104 ~~L~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 104 FSLQLLLLNANK-INCLR-VDAFQDLHNLNLLSLYDN-KLQTIAK-GTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred CCCCEEECCCCC-CCEeC-HHHcCCCCCCCEEECCCC-cCCEECH-HHHhCCCCCCEEEeCCCC
Confidence 999999999864 43321 122346799999999995 4442211 122347888888888765
No 135
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.73 E-value=2.5e-06 Score=71.57 Aligned_cols=131 Identities=19% Similarity=0.133 Sum_probs=82.4
Q ss_pred CCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCC
Q 017279 105 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCR 184 (374)
Q Consensus 105 ~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~ 184 (374)
++++.|+++ .+.+.......+ ..+++|++|+++++. ++... ......+++|+.|+++++ .++... ...+..++
T Consensus 40 ~~L~~L~Ls--~n~i~~~~~~~~-~~l~~L~~L~L~~N~-l~~i~-~~~~~~l~~L~~L~Ls~N-~l~~l~-~~~~~~l~ 112 (229)
T 3e6j_A 40 TNAQILYLH--DNQITKLEPGVF-DSLINLKELYLGSNQ-LGALP-VGVFDSLTQLTVLDLGTN-QLTVLP-SAVFDRLV 112 (229)
T ss_dssp TTCSEEECC--SSCCCCCCTTTT-TTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCT
T ss_pred CCCCEEEcC--CCccCccCHHHh-hCccCCcEEECCCCC-CCCcC-hhhcccCCCcCEEECCCC-cCCccC-hhHhCcch
Confidence 789999998 444443221122 347889999999863 32211 122244789999999884 444211 11234589
Q ss_pred CCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCC
Q 017279 185 KLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCV 248 (374)
Q Consensus 185 ~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 248 (374)
+|++|+++++. +. .+..-...+++|+.|+++++. +..... .....+++|+.|++++++
T Consensus 113 ~L~~L~Ls~N~--l~--~lp~~~~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 113 HLKELFMCCNK--LT--ELPRGIERLTHLTHLALDQNQ-LKSIPH-GAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TCCEEECCSSC--CC--SCCTTGGGCTTCSEEECCSSC-CCCCCT-TTTTTCTTCCEEECTTSC
T ss_pred hhCeEeccCCc--cc--ccCcccccCCCCCEEECCCCc-CCccCH-HHHhCCCCCCEEEeeCCC
Confidence 99999999854 33 222223578999999998854 443211 234567999999999954
No 136
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.61 E-value=1.3e-05 Score=76.49 Aligned_cols=102 Identities=20% Similarity=0.170 Sum_probs=50.1
Q ss_pred CCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCC
Q 017279 159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPD 238 (374)
Q Consensus 159 ~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 238 (374)
.|+.|+++++ .++. ++. ...+++|+.|+++++. +. .++.....+++|+.|+++++. ++. +. ....+++
T Consensus 442 ~L~~L~Ls~n-~l~~--lp~-~~~l~~L~~L~Ls~N~--l~--~lp~~~~~l~~L~~L~Ls~N~-l~~--lp-~l~~l~~ 509 (567)
T 1dce_A 442 DVRVLHLAHK-DLTV--LCH-LEQLLLVTHLDLSHNR--LR--ALPPALAALRCLEVLQASDNA-LEN--VD-GVANLPR 509 (567)
T ss_dssp TCSEEECTTS-CCSS--CCC-GGGGTTCCEEECCSSC--CC--CCCGGGGGCTTCCEEECCSSC-CCC--CG-GGTTCSS
T ss_pred CceEEEecCC-CCCC--CcC-ccccccCcEeecCccc--cc--ccchhhhcCCCCCEEECCCCC-CCC--Cc-ccCCCCC
Confidence 5666666653 3332 222 3345666666666543 22 222233356666666666543 332 12 2334566
Q ss_pred CCeeecCCCCCCCHHH-HHHHHhcCCCCceEecCCCC
Q 017279 239 LRSLDLCGCVCITDDS-VIALANGCPHLRSLGLYYCR 274 (374)
Q Consensus 239 L~~L~l~~~~~l~~~~-l~~l~~~~~~L~~L~l~~~~ 274 (374)
|+.|++++| .++... ...+ ..+++|+.|+++++.
T Consensus 510 L~~L~Ls~N-~l~~~~~p~~l-~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 510 LQELLLCNN-RLQQSAAIQPL-VSCPRLVLLNLQGNS 544 (567)
T ss_dssp CCEEECCSS-CCCSSSTTGGG-GGCTTCCEEECTTSG
T ss_pred CcEEECCCC-CCCCCCCcHHH-hcCCCCCEEEecCCc
Confidence 666666663 343221 1122 236666666666653
No 137
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.54 E-value=1.8e-05 Score=67.24 Aligned_cols=40 Identities=15% Similarity=0.312 Sum_probs=36.2
Q ss_pred CccCCCCHHHHHHHhcCCCccchhhhcccchhHHHhhhcc
Q 017279 41 TEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICLG 80 (374)
Q Consensus 41 ~~~~~Lp~eil~~If~~L~~~~l~~~~~vc~~w~~~~~~~ 80 (374)
..|+.||+|++.+||+||+.+|++++++|||+|+.++...
T Consensus 3 ~~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~ 42 (312)
T 3l2o_B 3 STLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDP 42 (312)
T ss_dssp CHHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCH
T ss_pred chhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccc
Confidence 3578999999999999999999999999999999887543
No 138
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.49 E-value=3e-05 Score=63.06 Aligned_cols=83 Identities=19% Similarity=0.070 Sum_probs=42.9
Q ss_pred CCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCC
Q 017279 184 RKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCP 263 (374)
Q Consensus 184 ~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~ 263 (374)
++|++|++++.. +. .+...+..+++|+.|+++++. ++... ......+++|++|+++++ .++...... ...++
T Consensus 31 ~~l~~L~L~~n~--i~--~ip~~~~~l~~L~~L~Ls~N~-i~~i~-~~~f~~l~~L~~L~Ls~N-~l~~i~~~~-f~~l~ 102 (193)
T 2wfh_A 31 RDVTELYLDGNQ--FT--LVPKELSNYKHLTLIDLSNNR-ISTLS-NQSFSNMTQLLTLILSYN-RLRCIPPRT-FDGLK 102 (193)
T ss_dssp TTCCEEECCSSC--CC--SCCGGGGGCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSS-CCCBCCTTT-TTTCT
T ss_pred CCCCEEECCCCc--Cc--hhHHHhhcccCCCEEECCCCc-CCEeC-HhHccCCCCCCEEECCCC-ccCEeCHHH-hCCCC
Confidence 567778777643 22 111233456777777777643 33211 111234667777777774 343211111 22356
Q ss_pred CCceEecCCCC
Q 017279 264 HLRSLGLYYCR 274 (374)
Q Consensus 264 ~L~~L~l~~~~ 274 (374)
+|+.|+++++.
T Consensus 103 ~L~~L~L~~N~ 113 (193)
T 2wfh_A 103 SLRLLSLHGND 113 (193)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEECCCCC
Confidence 67777766653
No 139
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.45 E-value=4.1e-05 Score=75.49 Aligned_cols=84 Identities=19% Similarity=0.093 Sum_probs=42.1
Q ss_pred hcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHh
Q 017279 181 GFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALAN 260 (374)
Q Consensus 181 ~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~ 260 (374)
..++.|+.|+|+++. +. .+..-...+++|+.|+|+++. ++. +......+++|+.|+|++| .++ .+..-..
T Consensus 221 ~~l~~L~~L~Ls~n~--l~--~l~~~~~~l~~L~~L~Ls~N~-l~~--lp~~~~~l~~L~~L~Ls~N-~l~--~lp~~~~ 290 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQ--IF--NISANIFKYDFLTRLYLNGNS-LTE--LPAEIKNLSNLRVLDLSHN-RLT--SLPAELG 290 (727)
T ss_dssp -CCCCCCEEECTTSC--CS--CCCGGGGGCCSCSCCBCTTSC-CSC--CCGGGGGGTTCCEEECTTS-CCS--SCCSSGG
T ss_pred ccCCCCcEEECCCCC--CC--CCChhhcCCCCCCEEEeeCCc-Ccc--cChhhhCCCCCCEEeCcCC-cCC--ccChhhc
Confidence 346667777776644 22 111111146677777776643 331 1122235667777777764 344 1211122
Q ss_pred cCCCCceEecCCCC
Q 017279 261 GCPHLRSLGLYYCR 274 (374)
Q Consensus 261 ~~~~L~~L~l~~~~ 274 (374)
.+++|+.|+|+++.
T Consensus 291 ~l~~L~~L~L~~N~ 304 (727)
T 4b8c_D 291 SCFQLKYFYFFDNM 304 (727)
T ss_dssp GGTTCSEEECCSSC
T ss_pred CCCCCCEEECCCCC
Confidence 46667777776663
No 140
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.44 E-value=6.5e-05 Score=64.48 Aligned_cols=39 Identities=23% Similarity=0.548 Sum_probs=35.9
Q ss_pred CCccCCCCHHHHHHHhcCCCccchh-hhcccchhHHHhhh
Q 017279 40 ITEWKDIPMELLLRILSLVDEPTVI-VASGVCSGWRDAIC 78 (374)
Q Consensus 40 ~~~~~~Lp~eil~~If~~L~~~~l~-~~~~vc~~w~~~~~ 78 (374)
...+..||+|++..||++|+.++++ ++++|||+|+.++.
T Consensus 48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~ 87 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVD 87 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHT
T ss_pred ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhc
Confidence 4578899999999999999999999 99999999998864
No 141
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.41 E-value=3.5e-06 Score=68.63 Aligned_cols=85 Identities=19% Similarity=0.130 Sum_probs=44.8
Q ss_pred CCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCC
Q 017279 184 RKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCP 263 (374)
Q Consensus 184 ~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~ 263 (374)
++|++|++++.. +........+..+++|++|+++++. ++... ......+++|+.|+++++ .++..... ....++
T Consensus 29 ~~l~~L~l~~n~--i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~ 102 (192)
T 1w8a_A 29 LHTTELLLNDNE--LGRISSDGLFGRLPHLVKLELKRNQ-LTGIE-PNAFEGASHIQELQLGEN-KIKEISNK-MFLGLH 102 (192)
T ss_dssp TTCSEEECCSCC--CCSBCCSCSGGGCTTCCEEECCSSC-CCCBC-TTTTTTCTTCCEEECCSC-CCCEECSS-SSTTCT
T ss_pred CCCCEEECCCCc--CCccCCccccccCCCCCEEECCCCC-CCCcC-HhHcCCcccCCEEECCCC-cCCccCHH-HhcCCC
Confidence 477888887743 2211111123457778888887643 33211 112235677777777774 34321111 112366
Q ss_pred CCceEecCCCC
Q 017279 264 HLRSLGLYYCR 274 (374)
Q Consensus 264 ~L~~L~l~~~~ 274 (374)
+|++|+++++.
T Consensus 103 ~L~~L~L~~N~ 113 (192)
T 1w8a_A 103 QLKTLNLYDNQ 113 (192)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEECCCCc
Confidence 77777777664
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.37 E-value=3e-06 Score=75.35 Aligned_cols=105 Identities=15% Similarity=0.105 Sum_probs=58.8
Q ss_pred CCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCC
Q 017279 211 NQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVK 290 (374)
Q Consensus 211 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~ 290 (374)
.+++.+.+.+. +....+..+...|++|+.|++.++ .++... ...+.+|++|+.|.+... +.. +...
T Consensus 202 ~~~~~l~~~~~--l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~-~~aF~~~~~L~~l~l~~n--i~~-----I~~~--- 267 (329)
T 3sb4_A 202 RDINFLTIEGK--LDNADFKLIRDYMPNLVSLDISKT-NATTIP-DFTFAQKKYLLKIKLPHN--LKT-----IGQR--- 267 (329)
T ss_dssp GGCSEEEEEEC--CCHHHHHHHHHHCTTCCEEECTTB-CCCEEC-TTTTTTCTTCCEEECCTT--CCE-----ECTT---
T ss_pred cccceEEEeee--ecHHHHHHHHHhcCCCeEEECCCC-Ccceec-HhhhhCCCCCCEEECCcc--cce-----ehHH---
Confidence 44555656542 455556666666889999999873 343211 122335888999988763 221 1111
Q ss_pred CCCccccccccccCCCCCc-EEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCC
Q 017279 291 NKPGIWESMKGRYDEEGLQ-SLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGC 348 (374)
Q Consensus 291 ~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C 348 (374)
.+..+++|+ .|++.+ .++.-.-. ....|++|+.|++++.
T Consensus 268 ----------aF~~~~~L~~~l~l~~--~l~~I~~~-------aF~~c~~L~~l~l~~n 307 (329)
T 3sb4_A 268 ----------VFSNCGRLAGTLELPA--SVTAIEFG-------AFMGCDNLRYVLATGD 307 (329)
T ss_dssp ----------TTTTCTTCCEEEEECT--TCCEECTT-------TTTTCTTEEEEEECSS
T ss_pred ----------HhhCChhccEEEEEcc--cceEEchh-------hhhCCccCCEEEeCCC
Confidence 123457787 888865 33311100 1256778888887543
No 143
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.34 E-value=5.6e-05 Score=60.38 Aligned_cols=85 Identities=14% Similarity=0.038 Sum_probs=46.5
Q ss_pred CCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcC
Q 017279 183 CRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGC 262 (374)
Q Consensus 183 ~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~ 262 (374)
.++|++|+++++. +... .......+++|++|+++++. ++... ......+++|+.|+++++ .++... ......+
T Consensus 27 ~~~l~~L~l~~n~--l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~N-~l~~~~-~~~~~~l 99 (177)
T 2o6r_A 27 PSSATRLELESNK--LQSL-PHGVFDKLTQLTKLSLSQNQ-IQSLP-DGVFDKLTKLTILYLHEN-KLQSLP-NGVFDKL 99 (177)
T ss_dssp CTTCSEEECCSSC--CCCC-CTTTTTTCTTCSEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTC
T ss_pred CCCCcEEEeCCCc--ccEe-CHHHhcCcccccEEECCCCc-ceEeC-hhHccCCCccCEEECCCC-CccccC-HHHhhCC
Confidence 4678888888744 2211 11123456788888887653 33211 112235677888888874 343211 1122346
Q ss_pred CCCceEecCCCC
Q 017279 263 PHLRSLGLYYCR 274 (374)
Q Consensus 263 ~~L~~L~l~~~~ 274 (374)
++|+.|+++++.
T Consensus 100 ~~L~~L~l~~N~ 111 (177)
T 2o6r_A 100 TQLKELALDTNQ 111 (177)
T ss_dssp TTCCEEECCSSC
T ss_pred cccCEEECcCCc
Confidence 777777777764
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.31 E-value=1.1e-05 Score=71.65 Aligned_cols=202 Identities=14% Similarity=0.121 Sum_probs=105.3
Q ss_pred CCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCC----------H---------HHHHHHHhc--------
Q 017279 104 LTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLS----------D---------RSLYALAHG-------- 156 (374)
Q Consensus 104 ~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~----------~---------~~~~~l~~~-------- 156 (374)
.++++.|.+. ..+....+..+...+++|+.|+|+++. +. . .........
T Consensus 24 ~~~l~~L~l~---g~i~~~~~~~l~~~l~~L~~LdLs~n~-i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g 99 (329)
T 3sb4_A 24 ANSITHLTLT---GKLNAEDFRHLRDEFPSLKVLDISNAE-IKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKG 99 (329)
T ss_dssp HHHCSEEEEE---EEECHHHHHHHHHSCTTCCEEEEEEEE-ECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEE
T ss_pred hCceeEEEEe---ccccHHHHHHHHHhhccCeEEecCcce-eEEecCccccccccccccccccccCHHHhcccccccccc
Confidence 4578899998 245666677776658899999998752 22 0 000111234
Q ss_pred CCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCcc-CccHHHHHHHHhcCCCCCEEeccC---------------
Q 017279 157 CPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVK-AATDYALQAIGRNCNQLQSLNLGW--------------- 220 (374)
Q Consensus 157 ~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~-~~~~~~~~~l~~~~~~L~~L~l~~--------------- 220 (374)
|++|++|.+.. .+...+- ..+..|++|+.+++..... .+.... +..|.++..+.+..
T Consensus 100 ~~~L~~l~L~~--~i~~I~~-~aF~~~~~L~~l~l~~n~i~~i~~~a----F~~~~~l~~l~~~~~~~~~~~~~i~~~~f 172 (329)
T 3sb4_A 100 KQTLEKVILSE--KIKNIED-AAFKGCDNLKICQIRKKTAPNLLPEA----LADSVTAIFIPLGSSDAYRFKNRWEHFAF 172 (329)
T ss_dssp CTTCCC-CBCT--TCCEECT-TTTTTCTTCCEEEBCCSSCCEECTTS----SCTTTCEEEECTTCTHHHHTSTTTTTSCE
T ss_pred cCCCcEEECCc--cccchhH-HHhhcCcccceEEcCCCCccccchhh----hcCCCceEEecCcchhhhhcccccccccc
Confidence 77888888865 2221111 1223578888888865321 011111 11233333333221
Q ss_pred --------------CCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHh
Q 017279 221 --------------CEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQ 286 (374)
Q Consensus 221 --------------~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~ 286 (374)
...+. ..+....-...++..+.+.+ .+....+..+...|++|+.|++.++. ++.-+-
T Consensus 173 ~~~~~L~~~i~~~~~~~l~-~~~~~~~~~~~~~~~l~~~~--~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~----- 243 (329)
T 3sb4_A 173 IEGEPLETTIQVGAMGKLE-DEIMKAGLQPRDINFLTIEG--KLDNADFKLIRDYMPNLVSLDISKTN-ATTIPD----- 243 (329)
T ss_dssp EESCCCEEEEEECTTCCHH-HHHHHTTCCGGGCSEEEEEE--CCCHHHHHHHHHHCTTCCEEECTTBC-CCEECT-----
T ss_pred ccccccceeEEecCCCcHH-HHHhhcccCccccceEEEee--eecHHHHHHHHHhcCCCeEEECCCCC-cceecH-----
Confidence 11100 00011111234556666665 35556666666679999999998753 322111
Q ss_pred cCCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCc-eEEecC
Q 017279 287 SGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRH-SLVMSG 347 (374)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~-~L~ls~ 347 (374)
..+..+++|+.|++.+. ++.-.-. ....|++|+ .|++..
T Consensus 244 -------------~aF~~~~~L~~l~l~~n--i~~I~~~-------aF~~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 244 -------------FTFAQKKYLLKIKLPHN--LKTIGQR-------VFSNCGRLAGTLELPA 283 (329)
T ss_dssp -------------TTTTTCTTCCEEECCTT--CCEECTT-------TTTTCTTCCEEEEECT
T ss_pred -------------hhhhCCCCCCEEECCcc--cceehHH-------HhhCChhccEEEEEcc
Confidence 11335689999999872 4321111 125778888 887764
No 145
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=97.29 E-value=1.6e-05 Score=49.53 Aligned_cols=43 Identities=12% Similarity=-0.052 Sum_probs=31.6
Q ss_pred cCCCcCHHHHHHHHHHHHHhccccCCCCc--cccCCccCCccCCC
Q 017279 4 EATNLSSEDLNLCFEKMMMAGAGADRAGG--VKMDGVVITEWKDI 46 (374)
Q Consensus 4 ~~~~lp~e~~~~i~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~L 46 (374)
....||+|++.+||+||+..++.+++.|| |.........|..+
T Consensus 8 ~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~l 52 (53)
T 1fs1_A 8 SWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL 52 (53)
T ss_dssp -CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred CHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence 45689999999999999999999999999 44333344455543
No 146
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.18 E-value=7.6e-05 Score=71.26 Aligned_cols=125 Identities=21% Similarity=0.121 Sum_probs=82.5
Q ss_pred CCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCC
Q 017279 105 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCR 184 (374)
Q Consensus 105 ~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~ 184 (374)
..|+.|+++ .+.++.. .. ...+++|+.|+++++ .++. +......+++|+.|+|+++ .++. ++ ....++
T Consensus 441 ~~L~~L~Ls--~n~l~~l--p~-~~~l~~L~~L~Ls~N-~l~~--lp~~~~~l~~L~~L~Ls~N-~l~~--lp-~l~~l~ 508 (567)
T 1dce_A 441 ADVRVLHLA--HKDLTVL--CH-LEQLLLVTHLDLSHN-RLRA--LPPALAALRCLEVLQASDN-ALEN--VD-GVANLP 508 (567)
T ss_dssp TTCSEEECT--TSCCSSC--CC-GGGGTTCCEEECCSS-CCCC--CCGGGGGCTTCCEEECCSS-CCCC--CG-GGTTCS
T ss_pred cCceEEEec--CCCCCCC--cC-ccccccCcEeecCcc-cccc--cchhhhcCCCCCEEECCCC-CCCC--Cc-ccCCCC
Confidence 368999999 4455431 12 345889999999997 4441 2222345899999999984 5543 33 345689
Q ss_pred CCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHH--HHHHHHhcCCCCCeeec
Q 017279 185 KLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDV--GVMNLAYGCPDLRSLDL 244 (374)
Q Consensus 185 ~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~--~~~~l~~~~~~L~~L~l 244 (374)
+|+.|+++++. +...........+++|+.|+++++. ++.. ....+...+|+|+.|++
T Consensus 509 ~L~~L~Ls~N~--l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 509 RLQELLLCNNR--LQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCCEEECCSSC--CCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCcEEECCCCC--CCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccCC
Confidence 99999999854 4332212334569999999998864 3321 12344456899999864
No 147
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.15 E-value=0.00014 Score=71.71 Aligned_cols=117 Identities=17% Similarity=0.073 Sum_probs=76.3
Q ss_pred HhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHH
Q 017279 154 AHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLA 233 (374)
Q Consensus 154 ~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~ 233 (374)
...+++|+.|+|+++. +.. ++.-...+++|++|+|+++. +. .+...+..+++|+.|+|+++. ++. +....
T Consensus 220 ~~~l~~L~~L~Ls~n~-l~~--l~~~~~~l~~L~~L~Ls~N~--l~--~lp~~~~~l~~L~~L~Ls~N~-l~~--lp~~~ 289 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQ-IFN--ISANIFKYDFLTRLYLNGNS--LT--ELPAEIKNLSNLRVLDLSHNR-LTS--LPAEL 289 (727)
T ss_dssp --CCCCCCEEECTTSC-CSC--CCGGGGGCCSCSCCBCTTSC--CS--CCCGGGGGGTTCCEEECTTSC-CSS--CCSSG
T ss_pred hccCCCCcEEECCCCC-CCC--CChhhcCCCCCCEEEeeCCc--Cc--ccChhhhCCCCCCEEeCcCCc-CCc--cChhh
Confidence 3457899999999853 331 22222368999999999865 43 233334578999999999865 442 22223
Q ss_pred hcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHH
Q 017279 234 YGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSL 284 (374)
Q Consensus 234 ~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l 284 (374)
..+++|++|++++| .++ .+..-+..+++|+.|+|+++. ++......+
T Consensus 290 ~~l~~L~~L~L~~N-~l~--~lp~~~~~l~~L~~L~L~~N~-l~~~~p~~~ 336 (727)
T 4b8c_D 290 GSCFQLKYFYFFDN-MVT--TLPWEFGNLCNLQFLGVEGNP-LEKQFLKIL 336 (727)
T ss_dssp GGGTTCSEEECCSS-CCC--CCCSSTTSCTTCCCEECTTSC-CCSHHHHHH
T ss_pred cCCCCCCEEECCCC-CCC--ccChhhhcCCCccEEeCCCCc-cCCCChHHH
Confidence 56799999999995 454 121113358899999999986 665444444
No 148
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.09 E-value=3.6e-05 Score=62.60 Aligned_cols=108 Identities=19% Similarity=0.157 Sum_probs=69.7
Q ss_pred CCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcC
Q 017279 157 CPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGC 236 (374)
Q Consensus 157 ~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 236 (374)
.++|++|+++++ .++. ++.....+++|++|+++++. +.... ...+..+++|++|+++++. ++.... .....+
T Consensus 30 ~~~l~~L~L~~n-~i~~--ip~~~~~l~~L~~L~Ls~N~--i~~i~-~~~f~~l~~L~~L~Ls~N~-l~~i~~-~~f~~l 101 (193)
T 2wfh_A 30 PRDVTELYLDGN-QFTL--VPKELSNYKHLTLIDLSNNR--ISTLS-NQSFSNMTQLLTLILSYNR-LRCIPP-RTFDGL 101 (193)
T ss_dssp CTTCCEEECCSS-CCCS--CCGGGGGCTTCCEEECCSSC--CCCCC-TTTTTTCTTCCEEECCSSC-CCBCCT-TTTTTC
T ss_pred CCCCCEEECCCC-cCch--hHHHhhcccCCCEEECCCCc--CCEeC-HhHccCCCCCCEEECCCCc-cCEeCH-HHhCCC
Confidence 368999999984 4542 22344568999999999854 33211 1223468999999999854 443211 123467
Q ss_pred CCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCC
Q 017279 237 PDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCR 274 (374)
Q Consensus 237 ~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~ 274 (374)
++|+.|+++++ .++... ......+++|+.|++.+++
T Consensus 102 ~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 102 KSLRLLSLHGN-DISVVP-EGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp TTCCEEECCSS-CCCBCC-TTTTTTCTTCCEEECCSSC
T ss_pred CCCCEEECCCC-CCCeeC-hhhhhcCccccEEEeCCCC
Confidence 99999999995 454211 1122347788888888765
No 149
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.07 E-value=0.00013 Score=67.69 Aligned_cols=41 Identities=22% Similarity=0.396 Sum_probs=37.6
Q ss_pred cCCccCCCCHHHHHHHhcCCCccchhhhcccchhHHHhhhc
Q 017279 39 VITEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICL 79 (374)
Q Consensus 39 ~~~~~~~Lp~eil~~If~~L~~~~l~~~~~vc~~w~~~~~~ 79 (374)
..+.+..||.|++.+||+||+.++++++++|||+|++++..
T Consensus 11 ~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 11 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp CCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTT
T ss_pred ccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcC
Confidence 45789999999999999999999999999999999988754
No 150
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.02 E-value=1.5e-05 Score=64.87 Aligned_cols=109 Identities=19% Similarity=0.114 Sum_probs=69.7
Q ss_pred CCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCC
Q 017279 158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCP 237 (374)
Q Consensus 158 ~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 237 (374)
++|+.|+++++ .+...........+++|++|+++++. +.... ...+..+++|+.|+++++. ++.... .....++
T Consensus 29 ~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~ 102 (192)
T 1w8a_A 29 LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQ--LTGIE-PNAFEGASHIQELQLGENK-IKEISN-KMFLGLH 102 (192)
T ss_dssp TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSC--CCCBC-TTTTTTCTTCCEEECCSCC-CCEECS-SSSTTCT
T ss_pred CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCC--CCCcC-HhHcCCcccCCEEECCCCc-CCccCH-HHhcCCC
Confidence 48999999984 44432111124568999999999854 33211 2234468999999999854 443211 1134579
Q ss_pred CCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCC
Q 017279 238 DLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCR 274 (374)
Q Consensus 238 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~ 274 (374)
+|++|+++++ .++..... ....+++|+.|+++++.
T Consensus 103 ~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 103 QLKTLNLYDN-QISCVMPG-SFEHLNSLTSLNLASNP 137 (192)
T ss_dssp TCCEEECCSS-CCCEECTT-SSTTCTTCCEEECTTCC
T ss_pred CCCEEECCCC-cCCeeCHH-HhhcCCCCCEEEeCCCC
Confidence 9999999995 45422111 22347889999998875
No 151
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=96.83 E-value=0.0006 Score=62.81 Aligned_cols=40 Identities=25% Similarity=0.350 Sum_probs=37.0
Q ss_pred cCCccCCCCHHHHHHHhcCCCccchhhhcccchhHHHhhh
Q 017279 39 VITEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAIC 78 (374)
Q Consensus 39 ~~~~~~~Lp~eil~~If~~L~~~~l~~~~~vc~~w~~~~~ 78 (374)
..+.+..||.|++.+||+||+.+++.++++|||+|+.++.
T Consensus 15 ~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~ 54 (445)
T 2ovr_B 15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAE 54 (445)
T ss_dssp CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHT
T ss_pred cCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcC
Confidence 4678999999999999999999999999999999998764
No 152
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=96.79 E-value=0.00011 Score=58.77 Aligned_cols=109 Identities=13% Similarity=0.038 Sum_probs=68.5
Q ss_pred CCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcC
Q 017279 157 CPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGC 236 (374)
Q Consensus 157 ~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 236 (374)
.++|+.|+++++ .+.... ......+++|++|+++++. +... ....+..+++|+.|+++++. ++... ......+
T Consensus 27 ~~~l~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~--l~~~-~~~~~~~l~~L~~L~l~~N~-l~~~~-~~~~~~l 99 (177)
T 2o6r_A 27 PSSATRLELESN-KLQSLP-HGVFDKLTQLTKLSLSQNQ--IQSL-PDGVFDKLTKLTILYLHENK-LQSLP-NGVFDKL 99 (177)
T ss_dssp CTTCSEEECCSS-CCCCCC-TTTTTTCTTCSEEECCSSC--CCCC-CTTTTTTCTTCCEEECCSSC-CCCCC-TTTTTTC
T ss_pred CCCCcEEEeCCC-cccEeC-HHHhcCcccccEEECCCCc--ceEe-ChhHccCCCccCEEECCCCC-ccccC-HHHhhCC
Confidence 478999999984 444211 1123468999999999854 3311 11223468999999998854 44211 1223467
Q ss_pred CCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCC
Q 017279 237 PDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCR 274 (374)
Q Consensus 237 ~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~ 274 (374)
++|+.|+++++ .++... ......+++|+.|+++++.
T Consensus 100 ~~L~~L~l~~N-~l~~~~-~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 100 TQLKELALDTN-QLKSVP-DGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TTCCEEECCSS-CCSCCC-TTTTTTCTTCCEEECCSSC
T ss_pred cccCEEECcCC-cceEeC-HHHhcCCcccCEEEecCCC
Confidence 99999999995 454211 1222346778888887775
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.78 E-value=0.0023 Score=54.45 Aligned_cols=84 Identities=26% Similarity=0.286 Sum_probs=42.5
Q ss_pred hcCCCCcEEeecCCCCCCH-HHHHHHHhcCCCCcEEEcCCCccCccHH-HHHHHHhcCCCCCEEeccCCCCCCH------
Q 017279 155 HGCPNLTRLNISGCTSFSD-HALAYLCGFCRKLKILNLCGCVKAATDY-ALQAIGRNCNQLQSLNLGWCEDVGD------ 226 (374)
Q Consensus 155 ~~~~~L~~L~L~~~~~~~~-~~~~~l~~~~~~L~~L~L~~~~~~~~~~-~~~~l~~~~~~L~~L~l~~~~~~~~------ 226 (374)
..+++|+.|+|+++ .+.. .+++.....+++|+.|+|++.. +.+. .+..+. .+ +|++|++.++. +..
T Consensus 167 ~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~--i~~~~~l~~l~-~l-~L~~L~L~~Np-l~~~~~~~~ 240 (267)
T 3rw6_A 167 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNE--LKSERELDKIK-GL-KLEELWLDGNS-LCDTFRDQS 240 (267)
T ss_dssp HHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSC--CCSGGGGGGGT-TS-CCSEEECTTST-TGGGCSSHH
T ss_pred hhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCc--cCCchhhhhcc-cC-CcceEEccCCc-CccccCcch
Confidence 44667777777663 3332 1223333456777777776633 3321 222221 12 67777776654 321
Q ss_pred HHHHHHHhcCCCCCeeec
Q 017279 227 VGVMNLAYGCPDLRSLDL 244 (374)
Q Consensus 227 ~~~~~l~~~~~~L~~L~l 244 (374)
.....+...+|+|+.|+=
T Consensus 241 ~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 241 TYISAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHHHHCTTCCEESS
T ss_pred hHHHHHHHHCcccCeECC
Confidence 112244556777777753
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.63 E-value=0.0029 Score=53.83 Aligned_cols=89 Identities=22% Similarity=0.177 Sum_probs=58.6
Q ss_pred HHHHhcCCCCcEEEcCCCccCccH-HHHHHHHhcCCCCCEEeccCCCCCCHH-HHHHHHhcCCCCCeeecCCCCCCCH--
Q 017279 177 AYLCGFCRKLKILNLCGCVKAATD-YALQAIGRNCNQLQSLNLGWCEDVGDV-GVMNLAYGCPDLRSLDLCGCVCITD-- 252 (374)
Q Consensus 177 ~~l~~~~~~L~~L~L~~~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~~L~~L~l~~~~~l~~-- 252 (374)
..+...+|+|+.|+|++.. +.. ..+..+...+++|+.|+|+++. +.+. .+..+ ..+ +|++|++++++ ++.
T Consensus 163 ~i~~~~l~~L~~L~Ls~N~--l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~~l~~l-~~l-~L~~L~L~~Np-l~~~~ 236 (267)
T 3rw6_A 163 RIIEENIPELLSLNLSNNR--LYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKI-KGL-KLEELWLDGNS-LCDTF 236 (267)
T ss_dssp HHHHHHCTTCCEEECTTSC--CCCCGGGTTHHHHSTTCCEEECTTSC-CCSGGGGGGG-TTS-CCSEEECTTST-TGGGC
T ss_pred HHHHhhCCCCCEEECCCCC--CCCCccchhHHhhCCCCCEEECCCCc-cCCchhhhhc-ccC-CcceEEccCCc-Ccccc
Confidence 3344568999999999854 433 2344455679999999998854 5443 22222 223 89999999954 542
Q ss_pred ----HHHHHHHhcCCCCceEecC
Q 017279 253 ----DSVIALANGCPHLRSLGLY 271 (374)
Q Consensus 253 ----~~l~~l~~~~~~L~~L~l~ 271 (374)
.....+...+|+|+.|+=.
T Consensus 237 ~~~~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 237 RDQSTYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp SSHHHHHHHHHHHCTTCCEESSC
T ss_pred CcchhHHHHHHHHCcccCeECCc
Confidence 2334566679999999743
No 155
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.61 E-value=0.00031 Score=64.61 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=37.3
Q ss_pred cCCccCCCCHH----HHHHHhcCCCccchhhhcccchhHHHhhhc
Q 017279 39 VITEWKDIPME----LLLRILSLVDEPTVIVASGVCSGWRDAICL 79 (374)
Q Consensus 39 ~~~~~~~Lp~e----il~~If~~L~~~~l~~~~~vc~~w~~~~~~ 79 (374)
..+++..||+| ++.+||+||+.+++.++++|||+|+.++..
T Consensus 7 ~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~ 51 (435)
T 1p22_A 7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSD 51 (435)
T ss_dssp CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHH
T ss_pred hcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Confidence 46788999999 999999999999999999999999987643
No 156
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.61 E-value=0.00055 Score=54.47 Aligned_cols=83 Identities=12% Similarity=0.036 Sum_probs=48.6
Q ss_pred CCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCC
Q 017279 211 NQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVK 290 (374)
Q Consensus 211 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~ 290 (374)
++|+.|+++++. +.... ......+++|+.|+++++ .++... ......+++|+.|+++++. ++.-..
T Consensus 33 ~~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~~L~Ls~N-~l~~i~-~~~~~~l~~L~~L~L~~N~-l~~l~~--------- 98 (174)
T 2r9u_A 33 TDKQRLWLNNNQ-ITKLE-PGVFDHLVNLQQLYFNSN-KLTAIP-TGVFDKLTQLTQLDLNDNH-LKSIPR--------- 98 (174)
T ss_dssp TTCSEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCT---------
T ss_pred CCCcEEEeCCCC-ccccC-HHHhcCCcCCCEEECCCC-CCCccC-hhHhCCcchhhEEECCCCc-cceeCH---------
Confidence 678888888754 33211 122345788888888884 454211 1122347888888888774 432000
Q ss_pred CCCccccccccccCCCCCcEEecCCC
Q 017279 291 NKPGIWESMKGRYDEEGLQSLNISQC 316 (374)
Q Consensus 291 ~~~~~~~~~~~~~~~~~L~~L~l~~~ 316 (374)
..+..+++|+.|+++++
T Consensus 99 ---------~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 99 ---------GAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp ---------TTTTTCTTCSEEECCSS
T ss_pred ---------HHhccccCCCEEEeCCC
Confidence 01234578888888874
No 157
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.52 E-value=0.00067 Score=53.69 Aligned_cols=84 Identities=14% Similarity=0.018 Sum_probs=48.3
Q ss_pred CCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCC
Q 017279 210 CNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGV 289 (374)
Q Consensus 210 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~ 289 (374)
.++|+.|+++++. ++... ......+++|+.|+++++ .++... ......+++|+.|+++++. ++....
T Consensus 29 ~~~l~~L~L~~N~-i~~~~-~~~~~~l~~L~~L~Ls~N-~l~~l~-~~~f~~l~~L~~L~L~~N~-l~~~~~-------- 95 (170)
T 3g39_A 29 PTTTQVLYLYDNQ-ITKLE-PGVFDRLTQLTRLDLDNN-QLTVLP-AGVFDKLTQLTQLSLNDNQ-LKSIPR-------- 95 (170)
T ss_dssp CTTCSEEECCSSC-CCCCC-TTTTTTCTTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCT--------
T ss_pred CCCCcEEEcCCCc-CCccC-hhhhcCcccCCEEECCCC-CcCccC-hhhccCCCCCCEEECCCCc-cCEeCH--------
Confidence 3678888888753 33211 112345788888888884 454211 1222357788888888774 432000
Q ss_pred CCCCccccccccccCCCCCcEEecCCC
Q 017279 290 KNKPGIWESMKGRYDEEGLQSLNISQC 316 (374)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~L~~L~l~~~ 316 (374)
..+..+++|+.|+++++
T Consensus 96 ----------~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 96 ----------GAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp ----------TTTTTCTTCCEEECCSS
T ss_pred ----------HHhcCCCCCCEEEeCCC
Confidence 01234578888888873
No 158
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=95.11 E-value=0.0017 Score=51.30 Aligned_cols=103 Identities=17% Similarity=0.095 Sum_probs=63.8
Q ss_pred CcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCC
Q 017279 160 LTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDL 239 (374)
Q Consensus 160 L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 239 (374)
.+.+++++. .++.. +. ...++|++|++++.. +.... ...+..+++|++|+++++. ++... ......+++|
T Consensus 11 ~~~l~~s~n-~l~~i--p~--~~~~~l~~L~L~~N~--i~~~~-~~~~~~l~~L~~L~Ls~N~-l~~l~-~~~f~~l~~L 80 (170)
T 3g39_A 11 GTTVDCSGK-SLASV--PT--GIPTTTQVLYLYDNQ--ITKLE-PGVFDRLTQLTRLDLDNNQ-LTVLP-AGVFDKLTQL 80 (170)
T ss_dssp TTEEECTTS-CCSSC--CS--CCCTTCSEEECCSSC--CCCCC-TTTTTTCTTCSEEECCSSC-CCCCC-TTTTTTCTTC
T ss_pred CCEEEeCCC-CcCcc--Cc--cCCCCCcEEEcCCCc--CCccC-hhhhcCcccCCEEECCCCC-cCccC-hhhccCCCCC
Confidence 456777652 33321 10 124789999999854 33211 2233468999999999864 44311 1223568999
Q ss_pred CeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCC
Q 017279 240 RSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCR 274 (374)
Q Consensus 240 ~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~ 274 (374)
+.|+++++ .++... ......+++|+.|+++++.
T Consensus 81 ~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 81 TQLSLNDN-QLKSIP-RGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC
T ss_pred CEEECCCC-ccCEeC-HHHhcCCCCCCEEEeCCCC
Confidence 99999995 454211 1223458999999999875
No 159
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=95.01 E-value=0.003 Score=50.13 Aligned_cols=85 Identities=15% Similarity=0.057 Sum_probs=56.5
Q ss_pred CCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcC
Q 017279 183 CRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGC 262 (374)
Q Consensus 183 ~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~ 262 (374)
.++|++|++++.. +.... ...+..+++|+.|+++++. ++... ......+++|+.|+++++ .++... ......+
T Consensus 32 ~~~L~~L~Ls~N~--l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~i~-~~~~~~l~~L~~L~L~~N-~l~~l~-~~~~~~l 104 (174)
T 2r9u_A 32 PTDKQRLWLNNNQ--ITKLE-PGVFDHLVNLQQLYFNSNK-LTAIP-TGVFDKLTQLTQLDLNDN-HLKSIP-RGAFDNL 104 (174)
T ss_dssp CTTCSEEECCSSC--CCCCC-TTTTTTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTC
T ss_pred CCCCcEEEeCCCC--ccccC-HHHhcCCcCCCEEECCCCC-CCccC-hhHhCCcchhhEEECCCC-ccceeC-HHHhccc
Confidence 3789999999854 33211 2234568999999999864 44311 122346899999999995 554211 1223358
Q ss_pred CCCceEecCCCC
Q 017279 263 PHLRSLGLYYCR 274 (374)
Q Consensus 263 ~~L~~L~l~~~~ 274 (374)
++|+.|+++++.
T Consensus 105 ~~L~~L~L~~N~ 116 (174)
T 2r9u_A 105 KSLTHIYLYNNP 116 (174)
T ss_dssp TTCSEEECCSSC
T ss_pred cCCCEEEeCCCC
Confidence 999999999876
No 160
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=94.68 E-value=0.0011 Score=60.35 Aligned_cols=37 Identities=16% Similarity=0.225 Sum_probs=19.9
Q ss_pred ccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCC
Q 017279 302 RYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGC 348 (374)
Q Consensus 302 ~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C 348 (374)
+.++++|+.+.|.. +++.-.- .....| +|+.|.+++.
T Consensus 319 F~~c~~L~~l~lp~--~l~~I~~-------~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 319 LGGNRKVTQLTIPA--NVTQINF-------SAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp TTTCCSCCEEEECT--TCCEECT-------TSSSSS-CCCEEEECCS
T ss_pred hcCCCCccEEEECc--cccEEcH-------HhCCCC-CCCEEEEcCC
Confidence 34557777777754 2321000 012466 7777777765
No 161
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=93.95 E-value=0.015 Score=51.59 Aligned_cols=65 Identities=15% Similarity=0.137 Sum_probs=40.5
Q ss_pred HhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCC
Q 017279 207 GRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCR 274 (374)
Q Consensus 207 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~ 274 (374)
...+++|+.|+|++...+.... ...+..+++|+.|+|+++ .++... ...+..+++|+.|+|+++.
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~-~~~~~~l~~L~~L~l~~N-~l~~~~-~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLE-LRDLRGLGELRNLTIVKS-GLRFVA-PDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEEC-GGGSCSCCCCSEEECCSS-CCCEEC-TTGGGSCSCCCEEECCSSC
T ss_pred CCCCCCeeEEEccCCCCCCCcC-hhHhccccCCCEEECCCC-ccceeC-HHHhcCCcCCCEEeCCCCc
Confidence 4456789999997523344321 122346788999999985 554321 1222358889999988875
No 162
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=91.78 E-value=0.015 Score=49.94 Aligned_cols=31 Identities=13% Similarity=-0.034 Sum_probs=27.7
Q ss_pred cCCCcCHHHHHHHHHHHHHhccc-cCCCCccc
Q 017279 4 EATNLSSEDLNLCFEKMMMAGAG-ADRAGGVK 34 (374)
Q Consensus 4 ~~~~lp~e~~~~i~~~l~~~~~~-~~~~~~~~ 34 (374)
....||+|++.+||++|+..++. +|+.||..
T Consensus 50 ~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~ 81 (297)
T 2e31_A 50 YLAELPEPLLLRVLAELPATELVQACRLVCLR 81 (297)
T ss_dssp CTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHH
T ss_pred ChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHH
Confidence 34589999999999999999999 99999943
No 163
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=90.91 E-value=0.018 Score=50.95 Aligned_cols=102 Identities=17% Similarity=0.022 Sum_probs=61.1
Q ss_pred EEeecCCCCCCHHHHHHHHhcCCCCcEEEcCC-CccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCC
Q 017279 162 RLNISGCTSFSDHALAYLCGFCRKLKILNLCG-CVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLR 240 (374)
Q Consensus 162 ~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~-~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 240 (374)
.+++++...++. ++. ...+++|++|+|++ .. +.... ...+..+++|+.|+|+++. +.... ...+..+++|+
T Consensus 12 ~v~~~~~n~l~~--ip~-l~~~~~L~~L~l~~~n~--l~~~~-~~~~~~l~~L~~L~l~~N~-l~~~~-~~~~~~l~~L~ 83 (347)
T 2ifg_A 12 GLRCTRDGALDS--LHH-LPGAENLTELYIENQQH--LQHLE-LRDLRGLGELRNLTIVKSG-LRFVA-PDAFHFTPRLS 83 (347)
T ss_dssp CEECCSSCCCTT--TTT-SCSCSCCSEEECCSCSS--CCEEC-GGGSCSCCCCSEEECCSSC-CCEEC-TTGGGSCSCCC
T ss_pred EEEcCCCCCCCc--cCC-CCCCCCeeEEEccCCCC--CCCcC-hhHhccccCCCEEECCCCc-cceeC-HHHhcCCcCCC
Confidence 345544213433 333 45678999999985 33 22211 1224468999999999864 54421 22335789999
Q ss_pred eeecCCCCCCCHHHHHHHHhcCCCCceEecCCCC
Q 017279 241 SLDLCGCVCITDDSVIALANGCPHLRSLGLYYCR 274 (374)
Q Consensus 241 ~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~ 274 (374)
.|+|+++ .++... ..+.... .|+.|++.++.
T Consensus 84 ~L~l~~N-~l~~~~-~~~~~~~-~L~~l~l~~N~ 114 (347)
T 2ifg_A 84 RLNLSFN-ALESLS-WKTVQGL-SLQELVLSGNP 114 (347)
T ss_dssp EEECCSS-CCSCCC-STTTCSC-CCCEEECCSSC
T ss_pred EEeCCCC-ccceeC-HHHcccC-CceEEEeeCCC
Confidence 9999995 554211 1122223 39999998875
No 164
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=90.84 E-value=0.0028 Score=57.60 Aligned_cols=152 Identities=14% Similarity=0.124 Sum_probs=70.3
Q ss_pred cCCCCcEEeecCC--CCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHH
Q 017279 156 GCPNLTRLNISGC--TSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLA 233 (374)
Q Consensus 156 ~~~~L~~L~L~~~--~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~ 233 (374)
.|++|+.+++..+ ..+....+ .+.+|+.+.+...-..+... .+..|++|+.+.+... +...+-.++.
T Consensus 178 ~c~~L~~l~l~~n~l~~I~~~aF-----~~~~L~~l~lp~~l~~I~~~----aF~~~~~L~~l~l~~~--l~~I~~~aF~ 246 (401)
T 4fdw_A 178 YCYNLKKADLSKTKITKLPASTF-----VYAGIEEVLLPVTLKEIGSQ----AFLKTSQLKTIEIPEN--VSTIGQEAFR 246 (401)
T ss_dssp TCTTCCEEECTTSCCSEECTTTT-----TTCCCSEEECCTTCCEECTT----TTTTCTTCCCEECCTT--CCEECTTTTT
T ss_pred CcccCCeeecCCCcceEechhhE-----eecccCEEEeCCchheehhh----HhhCCCCCCEEecCCC--ccCccccccc
Confidence 3566666666531 11121111 14566666665321111111 2345667777777531 2111111111
Q ss_pred hcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEec
Q 017279 234 YGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNI 313 (374)
Q Consensus 234 ~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 313 (374)
+ .+|+.+.+.+. ++... ...+.+|++|+.+.+.+.. +..... .......+..|++|+.+++
T Consensus 247 -~-~~L~~i~lp~~--i~~I~-~~aF~~c~~L~~l~l~~~~-~~~~~~-------------~~I~~~aF~~c~~L~~l~l 307 (401)
T 4fdw_A 247 -E-SGITTVKLPNG--VTNIA-SRAFYYCPELAEVTTYGST-FNDDPE-------------AMIHPYCLEGCPKLARFEI 307 (401)
T ss_dssp -T-CCCSEEEEETT--CCEEC-TTTTTTCTTCCEEEEESSC-CCCCTT-------------CEECTTTTTTCTTCCEECC
T ss_pred -c-CCccEEEeCCC--ccEEC-hhHhhCCCCCCEEEeCCcc-ccCCcc-------------cEECHHHhhCCccCCeEEe
Confidence 1 46777766441 22111 1122357778888776543 110000 0011112557789999999
Q ss_pred CCCCCCCHHHHHHHHhhCCCccCCCCCceEEec
Q 017279 314 SQCTALTPPAVQALCDTFPALHTCSGRHSLVMS 346 (374)
Q Consensus 314 ~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls 346 (374)
.+ +++.-.-. ....|++|+.|.|.
T Consensus 308 ~~--~i~~I~~~-------aF~~c~~L~~l~lp 331 (401)
T 4fdw_A 308 PE--SIRILGQG-------LLGGNRKVTQLTIP 331 (401)
T ss_dssp CT--TCCEECTT-------TTTTCCSCCEEEEC
T ss_pred CC--ceEEEhhh-------hhcCCCCccEEEEC
Confidence 75 23321111 12578888988874
No 165
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=90.77 E-value=0.012 Score=50.14 Aligned_cols=30 Identities=7% Similarity=-0.159 Sum_probs=27.1
Q ss_pred cCCCcCHHHHHHHHHHHHHhccccCCCCcc
Q 017279 4 EATNLSSEDLNLCFEKMMMAGAGADRAGGV 33 (374)
Q Consensus 4 ~~~~lp~e~~~~i~~~l~~~~~~~~~~~~~ 33 (374)
...+||+||+..||+||+..|+++++.||.
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr 33 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNH 33 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHHHHTTCH
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 345799999999999999999999999994
No 166
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=84.74 E-value=0.13 Score=47.23 Aligned_cols=30 Identities=13% Similarity=-0.059 Sum_probs=26.9
Q ss_pred CCcCHHHHHHHHHHHHHhccccCCCCcccc
Q 017279 6 TNLSSEDLNLCFEKMMMAGAGADRAGGVKM 35 (374)
Q Consensus 6 ~~lp~e~~~~i~~~l~~~~~~~~~~~~~~~ 35 (374)
..||+|++.+||+||+..++.++++||..+
T Consensus 16 ~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w 45 (464)
T 3v7d_B 16 TSLPFEISLKIFNYLQFEDIINSLGVSQNW 45 (464)
T ss_dssp HHSCHHHHHHHHTTSCHHHHHHHHTTCHHH
T ss_pred HHCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 369999999999999999999999999433
No 167
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=78.63 E-value=0.37 Score=43.82 Aligned_cols=30 Identities=7% Similarity=-0.213 Sum_probs=27.1
Q ss_pred CCCcCHHHHHHHHHHHHHhccccCCCCccc
Q 017279 5 ATNLSSEDLNLCFEKMMMAGAGADRAGGVK 34 (374)
Q Consensus 5 ~~~lp~e~~~~i~~~l~~~~~~~~~~~~~~ 34 (374)
-..||+|++..||+||+..++.++++||..
T Consensus 19 ~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~ 48 (445)
T 2ovr_B 19 ISLLPKELALYVLSFLEPKDLLQAAQTCRY 48 (445)
T ss_dssp TTSSCHHHHHHHHTTSCHHHHHHHTTSCHH
T ss_pred hHHCCHHHHHHHHHhCCHHHHHHHHHHhHH
Confidence 347999999999999999999999999943
No 168
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=74.15 E-value=1.5 Score=39.22 Aligned_cols=123 Identities=18% Similarity=0.314 Sum_probs=67.1
Q ss_pred HhCCCCCEEecCCCC-CCCHHHHHHHHhcCCCCcEEeecCC-CCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHH
Q 017279 129 NSCHDLQDLDLSKSF-KLSDRSLYALAHGCPNLTRLNISGC-TSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAI 206 (374)
Q Consensus 129 ~~~~~L~~L~l~~~~-~~~~~~~~~l~~~~~~L~~L~L~~~-~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l 206 (374)
..|..|+.+.+.... .+... ....|++|+.+.+... ..+.+. .+..|.+|+.+.+...-..+.+. .
T Consensus 262 ~~c~~L~~i~lp~~~~~I~~~----aF~~c~~L~~i~l~~~i~~I~~~----aF~~c~~L~~i~lp~~v~~I~~~----a 329 (394)
T 4gt6_A 262 DSCAYLASVKMPDSVVSIGTG----AFMNCPALQDIEFSSRITELPES----VFAGCISLKSIDIPEGITQILDD----A 329 (394)
T ss_dssp TTCSSCCEEECCTTCCEECTT----TTTTCTTCCEEECCTTCCEECTT----TTTTCTTCCEEECCTTCCEECTT----T
T ss_pred eecccccEEecccccceecCc----ccccccccccccCCCcccccCce----eecCCCCcCEEEeCCcccEehHh----H
Confidence 347888888886531 11111 1134788998888641 122222 23458899999986522213322 3
Q ss_pred HhcCCCCCEEeccCC-CCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCC
Q 017279 207 GRNCNQLQSLNLGWC-EDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYY 272 (374)
Q Consensus 207 ~~~~~~L~~L~l~~~-~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~ 272 (374)
+..|.+|+.+.|... ..+.+. ...+|++|+.+.+.+.. ..+..+ ..+.+|+.+.+..
T Consensus 330 F~~C~~L~~i~ip~sv~~I~~~----aF~~C~~L~~i~~~~~~----~~~~~~-~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 330 FAGCEQLERIAIPSSVTKIPES----AFSNCTALNNIEYSGSR----SQWNAI-STDSGLQNLPVAP 387 (394)
T ss_dssp TTTCTTCCEEEECTTCCBCCGG----GGTTCTTCCEEEESSCH----HHHHTC-BCCCCC-------
T ss_pred hhCCCCCCEEEECcccCEEhHh----HhhCCCCCCEEEECCce----eehhhh-hccCCCCEEEeCC
Confidence 456899999999642 223322 23578999999998842 222222 2477888887653
No 169
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=70.78 E-value=1.1 Score=40.26 Aligned_cols=103 Identities=20% Similarity=0.389 Sum_probs=51.4
Q ss_pred hcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCC-CCCCHHHHHHHHhcCCCCceEecCCC-CCCCHHHHHHHH
Q 017279 208 RNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGC-VCITDDSVIALANGCPHLRSLGLYYC-RNITDRAIYSLA 285 (374)
Q Consensus 208 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~~l~~~~l~~l~~~~~~L~~L~l~~~-~~i~~~~~~~l~ 285 (374)
..|..|+.+.+.... ...+ ......|++|+.+.+... ..+.+. ...+|.+|+.+.+... ..|.+
T Consensus 262 ~~c~~L~~i~lp~~~--~~I~-~~aF~~c~~L~~i~l~~~i~~I~~~----aF~~c~~L~~i~lp~~v~~I~~------- 327 (394)
T 4gt6_A 262 DSCAYLASVKMPDSV--VSIG-TGAFMNCPALQDIEFSSRITELPES----VFAGCISLKSIDIPEGITQILD------- 327 (394)
T ss_dssp TTCSSCCEEECCTTC--CEEC-TTTTTTCTTCCEEECCTTCCEECTT----TTTTCTTCCEEECCTTCCEECT-------
T ss_pred eecccccEEeccccc--ceec-CcccccccccccccCCCcccccCce----eecCCCCcCEEEeCCcccEehH-------
Confidence 346666766664321 1100 111234667777776541 112211 1234677777776532 11111
Q ss_pred hcCCCCCCccccccccccCCCCCcEEecCCC-CCCCHHHHHHHHhhCCCccCCCCCceEEecCC
Q 017279 286 QSGVKNKPGIWESMKGRYDEEGLQSLNISQC-TALTPPAVQALCDTFPALHTCSGRHSLVMSGC 348 (374)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C 348 (374)
.++..|.+|+.+.|... ..+.+.. ..+|++|+.+++.+.
T Consensus 328 --------------~aF~~C~~L~~i~ip~sv~~I~~~a----------F~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 328 --------------DAFAGCEQLERIAIPSSVTKIPESA----------FSNCTALNNIEYSGS 367 (394)
T ss_dssp --------------TTTTTCTTCCEEEECTTCCBCCGGG----------GTTCTTCCEEEESSC
T ss_pred --------------hHhhCCCCCCEEEECcccCEEhHhH----------hhCCCCCCEEEECCc
Confidence 11345678888888542 2232211 257888888888764
No 170
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=69.81 E-value=0.33 Score=44.11 Aligned_cols=27 Identities=7% Similarity=-0.149 Sum_probs=25.4
Q ss_pred CcCHH----HHHHHHHHHHHhccccCCCCcc
Q 017279 7 NLSSE----DLNLCFEKMMMAGAGADRAGGV 33 (374)
Q Consensus 7 ~lp~e----~~~~i~~~l~~~~~~~~~~~~~ 33 (374)
.||+| ++.+||+||+..++.++++||.
T Consensus 13 ~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~ 43 (435)
T 1p22_A 13 ALPARGLDHIAENILSYLDAKSLCAAELVCK 43 (435)
T ss_dssp HTGGGTCHHHHHHHHTTCCHHHHHHHHHHCH
T ss_pred HCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 58999 9999999999999999999993
No 171
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=46.50 E-value=5.6 Score=29.19 Aligned_cols=36 Identities=11% Similarity=0.039 Sum_probs=24.8
Q ss_pred CCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCc
Q 017279 306 EGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCL 349 (374)
Q Consensus 306 ~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~ 349 (374)
++|++|+|++ +.++...-. .+..+++|+.|+|++.+
T Consensus 31 ~~l~~L~Ls~-N~l~~l~~~-------~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 31 VDTTELVLTG-NNLTALPPG-------LLDALPALRTAHLGANP 66 (130)
T ss_dssp TTCSEEECTT-SCCSSCCTT-------TGGGCTTCCEEECCSSC
T ss_pred cCCCEEECCC-CcCCccChh-------hhhhccccCEEEecCCC
Confidence 5799999998 566531111 13457788999999875
No 172
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=34.84 E-value=3.9 Score=36.54 Aligned_cols=120 Identities=11% Similarity=0.158 Sum_probs=67.7
Q ss_pred hhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCC-CCCCHHHHHHHHhcCCCCcEEeecCC-CCCCHHHHHH
Q 017279 101 APKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKS-FKLSDRSLYALAHGCPNLTRLNISGC-TSFSDHALAY 178 (374)
Q Consensus 101 ~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~~~l~~~~~~L~~L~L~~~-~~~~~~~~~~ 178 (374)
+..+..++.+... ...+.+. ....|.+|+.+.+... ..+.+.. ...|.+|+.+.+... ..+.+.
T Consensus 272 F~~~~~l~~~~~~--~~~i~~~----~F~~~~~L~~i~l~~~i~~I~~~a----F~~c~~L~~i~lp~~v~~I~~~---- 337 (394)
T 4fs7_A 272 FYNCSGLKKVIYG--SVIVPEK----TFYGCSSLTEVKLLDSVKFIGEEA----FESCTSLVSIDLPYLVEEIGKR---- 337 (394)
T ss_dssp TTTCTTCCEEEEC--SSEECTT----TTTTCTTCCEEEECTTCCEECTTT----TTTCTTCCEECCCTTCCEECTT----
T ss_pred cccccccceeccC--ceeeccc----cccccccccccccccccceechhh----hcCCCCCCEEEeCCcccEEhHH----
Confidence 3456777777665 2222222 2245789999998753 1122221 234889999998642 222222
Q ss_pred HHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCee
Q 017279 179 LCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSL 242 (374)
Q Consensus 179 l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 242 (374)
.+..|.+|+.+.+...-..+... .+..|++|+.+.+... +... ..-...|++|+.+
T Consensus 338 aF~~c~~L~~i~lp~~l~~I~~~----aF~~C~~L~~i~lp~~--~~~~--~~~F~~c~~L~~I 393 (394)
T 4fs7_A 338 SFRGCTSLSNINFPLSLRKIGAN----AFQGCINLKKVELPKR--LEQY--RYDFEDTTKFKWI 393 (394)
T ss_dssp TTTTCTTCCEECCCTTCCEECTT----TBTTCTTCCEEEEEGG--GGGG--GGGBCTTCEEEEE
T ss_pred hccCCCCCCEEEECccccEehHH----HhhCCCCCCEEEECCC--CEEh--hheecCCCCCcEE
Confidence 23458999999986532212222 3457999999999752 2221 1123456777665
No 173
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=30.67 E-value=5.7 Score=35.11 Aligned_cols=127 Identities=17% Similarity=0.255 Sum_probs=72.3
Q ss_pred hhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCC-CCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHH
Q 017279 101 APKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKS-FKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYL 179 (374)
Q Consensus 101 ~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l 179 (374)
...+.+++.+.+......+.... ...+..|+.+.+... ..+... ....|.+|+.+.+... +...+. ..
T Consensus 213 f~~~~~l~~i~~~~~~~~i~~~~----f~~~~~L~~i~lp~~v~~I~~~----aF~~~~~l~~i~l~~~--i~~i~~-~a 281 (379)
T 4h09_A 213 FSYGKNLKKITITSGVTTLGDGA----FYGMKALDEIAIPKNVTSIGSF----LLQNCTALKTLNFYAK--VKTVPY-LL 281 (379)
T ss_dssp TTTCSSCSEEECCTTCCEECTTT----TTTCSSCCEEEECTTCCEECTT----TTTTCTTCCEEEECCC--CSEECT-TT
T ss_pred cccccccceeeeccceeEEcccc----ccCCccceEEEcCCCccEeCcc----ccceeehhcccccccc--ceeccc-cc
Confidence 34567788888862222222211 234788999998764 111221 1234788999988642 221111 12
Q ss_pred HhcCCCCcEEEcCCCc-cCccHHHHHHHHhcCCCCCEEeccCC-CCCCHHHHHHHHhcCCCCCeeecCC
Q 017279 180 CGFCRKLKILNLCGCV-KAATDYALQAIGRNCNQLQSLNLGWC-EDVGDVGVMNLAYGCPDLRSLDLCG 246 (374)
Q Consensus 180 ~~~~~~L~~L~L~~~~-~~~~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~~~l~~~~~~L~~L~l~~ 246 (374)
...|++|+.+.+.... ..+... .+..|.+|+.+.|... ..+.+. ...+|.+|+.+.+..
T Consensus 282 F~~c~~L~~i~l~~~~i~~I~~~----aF~~c~~L~~i~lp~~l~~I~~~----aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 282 CSGCSNLTKVVMDNSAIETLEPR----VFMDCVKLSSVTLPTALKTIQVY----AFKNCKALSTISYPK 342 (379)
T ss_dssp TTTCTTCCEEEECCTTCCEECTT----TTTTCTTCCEEECCTTCCEECTT----TTTTCTTCCCCCCCT
T ss_pred cccccccccccccccccceehhh----hhcCCCCCCEEEcCccccEEHHH----HhhCCCCCCEEEECC
Confidence 3468999999986532 112222 3456899999999642 222221 234689999998865
Done!