Query 017282
Match_columns 374
No_of_seqs 298 out of 1834
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 07:12:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017282.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017282hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00012 chlorophyll synthetas 100.0 4.5E-61 9.7E-66 474.9 37.8 354 21-374 20-375 (375)
2 TIGR02056 ChlG chlorophyll syn 100.0 1.4E-48 3.1E-53 378.6 32.2 304 71-374 2-306 (306)
3 PRK07566 bacteriochlorophyll/c 100.0 1.8E-47 4E-52 372.1 33.6 302 65-374 8-311 (314)
4 TIGR01476 chlor_syn_BchG bacte 100.0 3.2E-45 7E-50 351.8 31.0 283 85-373 1-283 (283)
5 PRK07419 1,4-dihydroxy-2-napht 100.0 1.8E-39 4E-44 313.5 33.0 280 77-370 5-295 (304)
6 PRK13387 1,4-dihydroxy-2-napht 100.0 2.1E-39 4.5E-44 315.5 31.9 276 83-370 2-310 (317)
7 PRK06080 1,4-dihydroxy-2-napht 100.0 6.9E-39 1.5E-43 309.3 32.0 276 83-370 2-288 (293)
8 PRK12392 bacteriochlorophyll c 100.0 1E-38 2.2E-43 311.7 31.1 272 79-354 7-282 (331)
9 PRK05951 ubiA prenyltransferas 100.0 1.2E-38 2.6E-43 307.9 30.3 273 82-369 2-285 (296)
10 TIGR00751 menA 1,4-dihydroxy-2 100.0 1.6E-38 3.4E-43 304.8 30.2 269 92-369 1-283 (284)
11 TIGR02235 menA_cyano-plnt 1,4- 100.0 7.3E-38 1.6E-42 300.3 31.4 270 87-370 2-282 (285)
12 PLN02922 prenyltransferase 100.0 1.1E-37 2.5E-42 302.6 32.7 278 79-370 10-310 (315)
13 PRK09573 (S)-2,3-di-O-geranylg 100.0 1.5E-37 3.3E-42 298.0 30.5 270 83-371 2-275 (279)
14 COG1575 MenA 1,4-dihydroxy-2-n 100.0 6.6E-37 1.4E-41 290.3 32.2 280 79-370 3-296 (303)
15 PRK12847 ubiA 4-hydroxybenzoat 100.0 6.7E-36 1.5E-40 287.5 31.5 257 80-355 3-269 (285)
16 PRK12884 ubiA prenyltransferas 100.0 6.5E-36 1.4E-40 286.6 30.7 243 81-340 1-245 (279)
17 PRK12882 ubiA prenyltransferas 100.0 1.2E-35 2.5E-40 284.5 29.3 244 83-342 3-249 (276)
18 PRK12848 ubiA 4-hydroxybenzoat 100.0 1.5E-35 3.3E-40 284.6 29.6 256 81-355 2-266 (282)
19 PRK12870 ubiA 4-hydroxybenzoat 100.0 1.4E-35 3E-40 285.7 29.3 228 80-324 5-240 (290)
20 PRK12878 ubiA 4-hydroxybenzoat 100.0 2.8E-35 6E-40 286.2 30.5 229 80-323 26-265 (314)
21 TIGR01475 ubiA_other putative 100.0 3.6E-35 7.7E-40 282.0 30.9 249 83-350 1-258 (282)
22 PRK12874 ubiA prenyltransferas 100.0 7.8E-35 1.7E-39 280.4 32.2 243 81-342 5-258 (291)
23 PRK04375 protoheme IX farnesyl 100.0 8E-35 1.7E-39 281.3 32.1 267 78-361 4-278 (296)
24 PRK12869 ubiA protoheme IX far 100.0 1.1E-34 2.5E-39 278.1 32.9 262 83-362 1-270 (279)
25 PRK12886 ubiA prenyltransferas 100.0 6.2E-35 1.3E-39 281.2 31.1 257 81-356 5-268 (291)
26 PRK12883 ubiA prenyltransferas 100.0 1E-34 2.2E-39 278.2 31.2 242 83-343 2-245 (277)
27 PRK12887 ubiA tocopherol phyty 100.0 5.2E-35 1.1E-39 283.6 28.9 269 81-361 10-296 (308)
28 TIGR01474 ubiA_proteo 4-hydrox 100.0 8.7E-35 1.9E-39 279.1 29.6 259 85-359 2-267 (281)
29 PRK13105 ubiA prenyltransferas 100.0 1.7E-34 3.6E-39 275.9 31.1 269 84-372 1-278 (282)
30 PRK12888 ubiA prenyltransferas 100.0 1.3E-34 2.8E-39 278.0 29.8 252 83-353 1-262 (284)
31 PRK12895 ubiA prenyltransferas 100.0 1.3E-34 2.8E-39 277.4 29.0 252 83-354 2-262 (286)
32 PRK13362 protoheme IX farnesyl 100.0 3.7E-34 8.1E-39 277.3 31.7 270 79-363 8-285 (306)
33 PRK13106 ubiA prenyltransferas 100.0 2.3E-34 5E-39 277.7 29.8 253 80-353 11-277 (300)
34 PLN02809 4-hydroxybenzoate non 100.0 3.9E-34 8.5E-39 275.0 29.8 259 81-358 3-273 (289)
35 TIGR01473 cyoE_ctaB protoheme 100.0 1.4E-33 3.1E-38 270.7 31.4 261 85-362 1-271 (280)
36 PRK12873 ubiA prenyltransferas 100.0 3.2E-33 7E-38 268.1 29.5 234 80-326 3-246 (294)
37 COG0382 UbiA 4-hydroxybenzoate 100.0 1.3E-32 2.8E-37 265.2 29.5 224 82-320 11-237 (289)
38 PRK12871 ubiA prenyltransferas 100.0 5E-32 1.1E-36 261.4 31.4 266 82-361 3-284 (297)
39 PRK12876 ubiA prenyltransferas 100.0 3E-32 6.5E-37 261.5 29.1 229 82-324 2-247 (300)
40 COG0109 CyoE Polyprenyltransfe 100.0 6E-33 1.3E-37 262.7 22.8 267 80-362 14-287 (304)
41 PRK13595 ubiA prenyltransferas 100.0 4.9E-32 1.1E-36 258.4 28.7 219 79-308 7-226 (292)
42 PLN02776 prenyltransferase 100.0 1.4E-29 3.1E-34 246.5 31.5 256 90-362 1-264 (341)
43 PRK12872 ubiA prenyltransferas 100.0 1.2E-29 2.6E-34 243.8 28.1 275 82-370 2-280 (285)
44 KOG1381 Para-hydroxybenzoate-p 100.0 1E-30 2.2E-35 240.7 13.8 267 79-362 59-335 (353)
45 PF01040 UbiA: UbiA prenyltran 100.0 4.8E-29 1E-33 234.5 24.3 189 96-298 1-193 (257)
46 PRK12875 ubiA prenyltransferas 100.0 6.8E-28 1.5E-32 230.8 30.7 215 79-308 3-222 (282)
47 PLN02878 homogentisate phytylt 100.0 1.1E-27 2.4E-32 226.1 24.5 181 124-310 25-215 (280)
48 PRK13591 ubiA prenyltransferas 99.9 6.8E-25 1.5E-29 210.3 26.5 172 132-317 68-246 (307)
49 PRK13592 ubiA prenyltransferas 99.9 5E-24 1.1E-28 202.7 25.1 219 131-370 55-292 (299)
50 KOG4581 Predicted membrane pro 99.9 2.3E-24 4.9E-29 194.7 8.4 297 63-371 40-345 (359)
51 PRK12324 phosphoribose diphosp 99.9 1.5E-20 3.3E-25 181.0 26.2 192 80-286 7-202 (295)
52 PRK08238 hypothetical protein; 99.9 1.2E-19 2.5E-24 185.7 27.9 200 68-284 170-377 (479)
53 KOG1380 Heme A farnesyltransfe 99.8 5.9E-21 1.3E-25 180.2 10.2 268 82-368 92-366 (409)
54 PRK12873 ubiA prenyltransferas 93.4 2.1 4.6E-05 41.6 13.6 37 259-295 52-89 (294)
55 COG0382 UbiA 4-hydroxybenzoate 93.3 5.4 0.00012 38.4 16.4 40 255-294 51-91 (289)
56 PRK12884 ubiA prenyltransferas 93.0 2 4.3E-05 41.1 12.8 36 257-293 43-78 (279)
57 TIGR02056 ChlG chlorophyll syn 93.0 1.7 3.7E-05 42.4 12.5 32 261-293 64-95 (306)
58 PLN02809 4-hydroxybenzoate non 92.6 3.8 8.3E-05 39.7 14.2 37 260-296 54-91 (289)
59 PRK12324 phosphoribose diphosp 92.0 7.5 0.00016 37.8 15.3 33 261-293 56-89 (295)
60 PRK13595 ubiA prenyltransferas 91.8 8.3 0.00018 37.5 15.2 25 264-289 60-84 (292)
61 PRK12882 ubiA prenyltransferas 91.4 9.4 0.0002 36.4 15.4 36 258-294 45-80 (276)
62 PRK12888 ubiA prenyltransferas 91.3 1.8 4E-05 41.7 10.4 33 131-163 168-201 (284)
63 TIGR01474 ubiA_proteo 4-hydrox 91.2 5.3 0.00011 38.4 13.4 35 261-295 50-85 (281)
64 PRK12875 ubiA prenyltransferas 90.4 4.3 9.4E-05 39.2 11.9 18 269-286 63-80 (282)
65 PLN00012 chlorophyll synthetas 90.4 4 8.7E-05 41.1 12.1 31 263-294 135-165 (375)
66 PRK12883 ubiA prenyltransferas 90.1 5.7 0.00012 37.9 12.5 31 262-293 48-78 (277)
67 PRK12392 bacteriochlorophyll c 90.0 2.7 5.9E-05 41.5 10.4 31 132-162 190-221 (331)
68 PRK12872 ubiA prenyltransferas 90.0 1.7 3.6E-05 41.7 8.7 44 134-180 173-217 (285)
69 PF01040 UbiA: UbiA prenyltran 90.0 3.7 8E-05 38.1 10.9 50 246-295 17-68 (257)
70 PRK07566 bacteriochlorophyll/c 89.7 3.3 7.2E-05 40.5 10.7 30 263-293 77-106 (314)
71 PRK12848 ubiA 4-hydroxybenzoat 89.7 7.2 0.00016 37.5 12.9 34 261-294 52-86 (282)
72 PRK05951 ubiA prenyltransferas 89.4 7 0.00015 37.9 12.6 38 246-283 34-72 (296)
73 PRK12847 ubiA 4-hydroxybenzoat 89.3 6.3 0.00014 37.9 12.2 36 260-295 54-90 (285)
74 PRK13591 ubiA prenyltransferas 89.2 1.2 2.7E-05 43.4 7.2 72 140-216 197-273 (307)
75 PRK09573 (S)-2,3-di-O-geranylg 89.2 21 0.00046 34.1 16.5 35 258-293 44-78 (279)
76 TIGR01473 cyoE_ctaB protoheme 88.8 6.5 0.00014 37.7 11.9 36 258-293 42-78 (280)
77 PRK12874 ubiA prenyltransferas 88.8 4 8.6E-05 39.6 10.4 33 131-163 176-209 (291)
78 PRK12887 ubiA tocopherol phyty 88.6 10 0.00022 37.1 13.1 24 270-294 72-95 (308)
79 PRK04375 protoheme IX farnesyl 88.4 6.8 0.00015 37.9 11.8 35 259-293 52-87 (296)
80 PRK12878 ubiA 4-hydroxybenzoat 88.4 13 0.00029 36.3 13.9 35 259-293 80-115 (314)
81 TIGR01475 ubiA_other putative 88.4 12 0.00026 35.8 13.4 47 247-293 31-79 (282)
82 PRK13592 ubiA prenyltransferas 88.3 17 0.00038 35.4 14.2 50 252-302 47-99 (299)
83 PRK12870 ubiA 4-hydroxybenzoat 88.1 8.4 0.00018 37.3 12.2 48 247-294 41-90 (290)
84 PRK08238 hypothetical protein; 88.0 10 0.00022 39.5 13.3 36 259-294 234-270 (479)
85 PRK13362 protoheme IX farnesyl 87.9 28 0.00061 34.0 16.1 48 247-294 42-91 (306)
86 TIGR01476 chlor_syn_BchG bacte 87.8 6.7 0.00014 37.6 11.3 39 134-175 173-212 (283)
87 COG1575 MenA 1,4-dihydroxy-2-n 87.6 7.1 0.00015 38.0 11.1 27 134-160 188-214 (303)
88 PLN02776 prenyltransferase 86.9 14 0.0003 36.7 13.0 46 249-294 26-73 (341)
89 PRK12895 ubiA prenyltransferas 86.5 20 0.00043 34.7 13.6 35 259-293 45-80 (286)
90 PRK13106 ubiA prenyltransferas 86.4 19 0.0004 35.2 13.5 47 247-293 44-92 (300)
91 PRK12869 ubiA protoheme IX far 86.1 23 0.00051 33.9 13.9 45 249-293 33-79 (279)
92 PRK12886 ubiA prenyltransferas 86.0 7.4 0.00016 37.7 10.5 33 131-163 171-204 (291)
93 PRK12876 ubiA prenyltransferas 85.7 9.4 0.0002 37.3 10.9 37 257-293 53-90 (300)
94 TIGR02235 menA_cyano-plnt 1,4- 85.3 18 0.00038 35.0 12.6 35 246-280 29-66 (285)
95 PRK12871 ubiA prenyltransferas 84.2 20 0.00043 34.8 12.6 35 247-281 36-71 (297)
96 PRK13105 ubiA prenyltransferas 83.5 29 0.00063 33.5 13.2 20 269-288 52-71 (282)
97 PRK06080 1,4-dihydroxy-2-napht 82.7 21 0.00046 34.3 12.0 32 247-278 33-65 (293)
98 PRK07419 1,4-dihydroxy-2-napht 82.6 19 0.00042 35.1 11.7 35 247-281 43-80 (304)
99 PRK13387 1,4-dihydroxy-2-napht 82.2 24 0.00053 34.6 12.4 37 246-282 33-70 (317)
100 TIGR00751 menA 1,4-dihydroxy-2 81.4 28 0.00061 33.6 12.3 32 247-278 23-55 (284)
101 PLN02922 prenyltransferase 74.1 61 0.0013 31.8 12.4 32 247-278 46-78 (315)
102 COG3476 Tryptophan-rich sensor 57.5 1.4E+02 0.003 26.5 14.4 119 136-264 21-143 (161)
103 PLN02878 homogentisate phytylt 52.4 2.1E+02 0.0045 27.7 11.2 24 269-293 41-64 (280)
104 KOG3146 Dolichyl pyrophosphate 45.8 94 0.002 28.8 7.3 38 209-249 142-179 (228)
105 COG0109 CyoE Polyprenyltransfe 40.7 3.6E+02 0.0079 26.4 12.1 52 247-298 47-100 (304)
106 cd00867 Trans_IPPS Trans-Isopr 38.8 15 0.00033 33.7 1.2 32 262-293 157-198 (236)
107 PRK10581 geranyltranstransfera 33.3 28 0.0006 33.9 2.0 42 260-301 212-264 (299)
108 PF00348 polyprenyl_synt: Poly 31.8 78 0.0017 29.8 4.8 38 261-298 176-224 (260)
109 COG0142 IspA Geranylgeranyl py 31.5 55 0.0012 32.1 3.8 37 262-298 205-252 (322)
110 TIGR02748 GerC3_HepT heptapren 30.1 81 0.0018 30.9 4.7 34 262-295 201-245 (319)
111 PRK04214 rbn ribonuclease BN/u 28.5 6.2E+02 0.013 25.6 11.0 17 133-149 116-132 (412)
112 PF09946 DUF2178: Predicted me 27.5 3.5E+02 0.0076 22.2 8.9 15 306-320 12-26 (111)
113 PF11085 YqhR: Conserved membr 26.1 74 0.0016 28.5 3.2 33 199-237 75-107 (173)
114 PF12046 DUF3529: Protein of u 25.0 1.9E+02 0.0042 25.9 5.7 58 156-213 68-127 (173)
115 cd00685 Trans_IPPS_HT Trans-Is 23.1 1.4E+02 0.0031 27.9 4.9 61 232-292 150-221 (259)
116 PLN02601 beta-carotene hydroxy 23.1 7E+02 0.015 24.2 12.0 16 198-213 210-225 (303)
117 TIGR02748 GerC3_HepT heptapren 22.6 2.3E+02 0.005 27.6 6.4 78 82-166 157-237 (319)
118 PRK02251 putative septation in 22.3 2E+02 0.0043 22.8 4.6 19 215-234 57-75 (87)
119 CHL00151 preA prenyl transfera 21.8 1.4E+02 0.0029 29.3 4.6 34 262-295 206-250 (323)
120 TIGR02749 prenyl_cyano solanes 20.8 1.8E+02 0.0039 28.5 5.2 63 232-294 175-248 (322)
121 PF11990 DUF3487: Protein of u 20.6 3.8E+02 0.0083 22.5 6.4 33 158-190 15-47 (121)
122 PF11712 Vma12: Endoplasmic re 20.5 72 0.0016 27.3 2.1 19 29-47 18-36 (142)
123 PF09933 DUF2165: Predicted sm 20.4 6E+02 0.013 22.4 11.3 44 136-180 18-72 (160)
124 TIGR01190 ccmB heme exporter p 20.2 5.7E+02 0.012 23.6 8.0 43 260-302 56-100 (211)
No 1
>PLN00012 chlorophyll synthetase; Provisional
Probab=100.00 E-value=4.5e-61 Score=474.91 Aligned_cols=354 Identities=82% Similarity=1.354 Sum_probs=311.0
Q ss_pred cccccccCCccccccccccchhhccCCCCCCCCCCCCCC--CCcccCCchhhhhhhccccccchhHHHHHhhhCccchHH
Q 017282 21 RVRTRPVLSPVSVSFSRRRLTVRAQEPNANEVKPQAPDK--APAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPP 98 (374)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~L~RP~~~~~ 98 (374)
+.+..+..++.+.+.++||..+|+++++++++|+++||+ |++++++.+|||+++||++++++++|+|++++||++|..
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~L~RP~t~~~ 99 (375)
T PLN00012 20 RSRRPSRPSTLSSPSPRRRLVVRAAETDTDKVKSQAPDKAPEKSDGGSAVNQLLGIKGAAQETDIWKIRLQLTKPVTWPP 99 (375)
T ss_pred hhccCCCCCCcccccccccceeeecCCcchhhhhcCCCCCccccccchhhHHhhCCCCcccchHHHHHHHHHhCHHHHHH
Confidence 444455566666777999999999999999999998887 455799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCCCCccccccCHHHHHHHHHHHHH
Q 017282 99 LIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLL 178 (374)
Q Consensus 99 ~~~~~~~G~~~~g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~l~~ 178 (374)
.++++++|++..+.++|..+++...++++++++.++++++|++|||+|+|+|++|+|+||+++|++++++++..+.++.+
T Consensus 100 ~~~~v~~G~~~~g~~~~~~~~~~~~ll~~ll~~~L~~~~an~iNDy~D~~iD~~~~~~Rpi~sG~Is~~~al~~~~~l~~ 179 (375)
T PLN00012 100 LVWGVLCGAAASGNFHWTLEDVAKSIVCMLMSGPFLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLL 179 (375)
T ss_pred HHHHHHHHHHHcCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHCeecHhhhccCCCCCCcCCCccCHHHHHHHHHHHHH
Confidence 99999999997777777543333345677778888999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHHHHHhHHHHHHHHHHhCCCCHHHHHHHH
Q 017282 179 AGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTL 258 (374)
Q Consensus 179 l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg~~~g~lp~~~~~a~~g~~~~~~~ll~~ 258 (374)
+++.+++++..+.++.++..+.+++++++++++||.||+++||++++||+.+|..++.+|++++++++|.+++..+++++
T Consensus 180 ~~l~l~~~L~~~~~~~~~~~~~l~l~gi~l~~~YS~pPl~lKr~~~~G~v~lG~~~~~lp~~~g~a~~g~~s~~~illal 259 (375)
T PLN00012 180 GGLGLAYTLDVWAGHDFPIVFYLALGGSLLSYIYSAPPLKLKQNGWIGNYALGASYISLPWWAGQALFGTLTPDVVVLTL 259 (375)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHhhhhcCCchhhhHhccHhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 88888887754443346777888888999999999999999999999999999999999988777888999999999999
Q ss_pred HHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 017282 259 LYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAGYLLGAGKPYYALALLALIVPQIVFQ 338 (374)
Q Consensus 259 ~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~l~lpl~~~~ 338 (374)
++++|+.+++++||++|+|+|+++|+||+||++|++++++++..++.+.+++++++..+.+..+|...+.++.+|+++++
T Consensus 260 ~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~l~~l~~~~~l~~~~~~~y~~~~~~l~l~~l~~~ 339 (375)
T PLN00012 260 LYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICVGSIDITQLSVAGYLLAIGKPYYALALLGLIIPQIFFQ 339 (375)
T ss_pred HHHHHHHHHHHHhhhcchhhHHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998877677777777777766665566555667789999999
Q ss_pred HHHHhcCcchHHHHHHHhHHHHHHHHHHHHHHhhcC
Q 017282 339 FQYFLKDPIKYDVKYQASAQPFLILGLLVTALATSH 374 (374)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~l~~gll~~~~~~~~ 374 (374)
.+.+++||.+++.+++.++++++++|++.++++++|
T Consensus 340 ~~~~~~~p~~~~~~~~~~a~~~~~~~~l~~~~~~~~ 375 (375)
T PLN00012 340 FKYFLPDPVKNDVKYQASAQPFLVFGLLVTALATGH 375 (375)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 998889999999999999999999999999999998
No 2
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=100.00 E-value=1.4e-48 Score=378.59 Aligned_cols=304 Identities=77% Similarity=1.310 Sum_probs=257.8
Q ss_pred hhhhcccc-ccchhHHHHHhhhCccchHHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhccccccc
Q 017282 71 LLGIKGAA-QETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREI 149 (374)
Q Consensus 71 ~~~~~~~~-~~~~~l~~~l~L~RP~~~~~~~~~~~~G~~~~g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~ 149 (374)
+.+++|.+ ++++++|+|+|++||++|+..++|+++|+...++++|...+....++++++++.++++++|++|||+|+|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~RP~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ll~~ll~~~l~~~~~n~~NDy~D~d~ 81 (306)
T TIGR02056 2 LLGIKGAAPGETNIWKIRLQLMKPITWIPLIWGVVCGAAASGNFHWSLEDVAKAALCMLLSGPCLTGYTQTINDFYDRDI 81 (306)
T ss_pred CCCcccccccchhHHHHHHHHcChHhhHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh
Confidence 33444443 67788999999999999999999999999877777764221122234555667889999999999999999
Q ss_pred ccccCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHH
Q 017282 150 DAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFA 229 (374)
Q Consensus 150 D~~n~~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~ 229 (374)
|++|+|+||+++|++|+++++.++..+.++++++++++..+.+..++.++.++++++++++.||.||+++||++++||+.
T Consensus 82 D~~~~~~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~~~~~~~~~~Yt~gP~~lk~~g~~G~i~ 161 (306)
T TIGR02056 82 DAINEPYRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLALFGSFIAFIYSAPPLKLKQNGWLGNFA 161 (306)
T ss_pred hccCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHcCChhhhhhcccHHHHH
Confidence 99999999999999999999999999999999999988755443356788899999999999999999999999889999
Q ss_pred HHHHHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHHHHH
Q 017282 230 LGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQI 309 (374)
Q Consensus 230 vg~~~g~lp~~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l~~l 309 (374)
+|..++..|++++++++|++++..++++++.++|+.++++.||++|+|+|+++|+||+|+++|+|++++++..++..+++
T Consensus 162 vg~~~~~~~~~~~~a~~g~~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~~~~~ 241 (306)
T TIGR02056 162 LGASYIALPWWAGHALFGELNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAIDIFQG 241 (306)
T ss_pred HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHHHHHHHHH
Confidence 99999988888777778999999999999999999999999999999999999999999999999999998877666665
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHhHHHHHHHHHHHHHHhhcC
Q 017282 310 SVAGYLLGAGKPYYALALLALIVPQIVFQFQYFLKDPIKYDVKYQASAQPFLILGLLVTALATSH 374 (374)
Q Consensus 310 ~l~~~~~~~~~~~~~~~l~~l~lpl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gll~~~~~~~~ 374 (374)
.++.+....+..++...+.++.+|+.+++.|.+.+||++.+..++.+++.+++.|++.++++++|
T Consensus 242 ~~~~~~~~~~~~~~~~ll~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (306)
T TIGR02056 242 LIAAYLLAIGENLYAAALVALIIPQITFQDKYFLKDPLKNDVKYQASAQPFLVLGIFVAALALGH 306 (306)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhChHhhCcchhhhhhHHHHHHHHHHHHhhcC
Confidence 55554432233334334566788999999998888999999999999999999999999999987
No 3
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=100.00 E-value=1.8e-47 Score=372.10 Aligned_cols=302 Identities=55% Similarity=0.928 Sum_probs=250.3
Q ss_pred CCchhhhhhhccccccchhHHHHHhhhCccchHHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcc
Q 017282 65 GSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDW 144 (374)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~l~~~l~L~RP~~~~~~~~~~~~G~~~~g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~ 144 (374)
.|.-||++|-||++-++++++.|++++||++|..++++.++|++..+.++|........++++++++.++++++|++|||
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~l~RP~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~Nd~ 87 (314)
T PRK07566 8 TSKPRQLLGPKGASPTTSIWKARLQLMKPITWFPPMWAFLCGAVSSGAFGWTLENVLKLLAGMLLAGPLLCGTSQTLNDY 87 (314)
T ss_pred ccccccccccccccccchHHHHHHHHhCCcchHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34457899999999999999999999999999999999999988766666642112223455666677789999999999
Q ss_pred cccccccccCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccc
Q 017282 145 YDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGW 224 (374)
Q Consensus 145 ~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~ 224 (374)
+|+|+|++|+|+||+++|++|+++++.++.++.++++.+++++ ++..+.++++++++++.||.||+++||+++
T Consensus 88 ~D~~~D~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~l-------~~~~~~l~l~~~~~~~~Yt~gP~~lK~~~~ 160 (314)
T PRK07566 88 FDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVLGLAVAYLL-------GPWVFLAALLGLFLAWIYSAPPLRLKQNGW 160 (314)
T ss_pred hccCccccCCCCCCCCCceeCHHHHHHHHHHHHHHHHHHHHHH-------ChHHHHHHHHHHHHHHHhcCCccccccccc
Confidence 9999999999999999999999999999999998888888775 455677888888889999999999999998
Q ss_pred hhhHHHHHHHhHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHH
Q 017282 225 IGNFALGASYISLPWWAGQALF--GTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVG 302 (374)
Q Consensus 225 ~g~l~vg~~~g~lp~~~~~a~~--g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~ 302 (374)
+||+++|+++|.+|++++.... +..++..++.+++.+++..+++++||++|+|+|+++|+||+|+++|++++++++..
T Consensus 161 ~g~i~vg~~~g~~~~~~g~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~ 240 (314)
T PRK07566 161 LGNYAVGLSYEGLPWWAGAAAFGAGLPSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACV 240 (314)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHHH
Confidence 8999999999888877654333 36788888888889999999999999999999999999999999999999998877
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHhHHHHHHHHHHHHHHhhcC
Q 017282 303 AIDITQISVAGYLLGAGKPYYALALLALIVPQIVFQFQYFLKDPIKYDVKYQASAQPFLILGLLVTALATSH 374 (374)
Q Consensus 303 ~~~l~~l~l~~~~~~~~~~~~~~~l~~l~lpl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gll~~~~~~~~ 374 (374)
.+.+.++.++.+....+..+|...+.++..|+++++.+. .+++++++.+++.+.++.+++++++.++.++|
T Consensus 241 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 311 (314)
T PRK07566 241 VIDLFQLAVIALLLAWGQPLYAAIVGLLLIPQITLQDRL-LRDPLERDVWYNASAQPFYVLGMLVTALAIRH 311 (314)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-hhChhhcChhhhhhhhHHHHHHHHHHHHHhcc
Confidence 766666655444333232233223444567787777666 66788889999999999999999999999998
No 4
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=100.00 E-value=3.2e-45 Score=351.78 Aligned_cols=283 Identities=47% Similarity=0.761 Sum_probs=233.0
Q ss_pred HHHHhhhCccchHHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCCCCcccccc
Q 017282 85 KIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAI 164 (374)
Q Consensus 85 ~~~l~L~RP~~~~~~~~~~~~G~~~~g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n~~~Rpl~sG~i 164 (374)
|+|++++||++++.+++|+++|.+.++.......++...+++.++++.++++++|++|||+|+|+|++|+|+||+++|++
T Consensus 1 ~~~~~l~rp~t~~~~~~~~~~G~~~a~~~~~~~~~~~~~ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G~i 80 (283)
T TIGR01476 1 RAHIELMKPVTWIPPIWACFCGALASGYERGFPEHWWLMLLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSGII 80 (283)
T ss_pred CceeEecCCceehhHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCCCc
Confidence 46899999999999999999999865321111012233455566678889999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHHHHHhHHHHHHHHH
Q 017282 165 SENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQA 244 (374)
Q Consensus 165 s~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg~~~g~lp~~~~~a 244 (374)
|+++++..+.++..+++++++++. ++....+++++.+.++.||.||+++||++++||+.+|++++..|+..++.
T Consensus 81 s~~~a~~~~~~~~~~~~~l~~~l~------~~~~~~l~~~~~~~~~~Ys~~p~~lk~~~~~g~~~vg~~~~~~~~~~~~~ 154 (283)
T TIGR01476 81 SLREVRWNWLVLTVAGLLVALVLG------NWLIVLFTVVGIVLAVIYSMPPIKLKRNGWLGPPAVGLSYEGLPWMAGHA 154 (283)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhheecCchhhhccCCCccHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998888774 33336677788888999999999999999889999999998888877666
Q ss_pred HhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 017282 245 LFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAGYLLGAGKPYYA 324 (374)
Q Consensus 245 ~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l~~l~l~~~~~~~~~~~~~ 324 (374)
..++.++..++.+++.++++.+++++||++|+|+|+++|+||+|+++|+|++++++..++.+.++.++.+....+..++.
T Consensus 155 ~~~~~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 234 (283)
T TIGR01476 155 IFAPLTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIGLLLIWGQPWVA 234 (283)
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHH
Confidence 66778888888888999999999999999999999999999999999999999998876666665444332222222222
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcchHHHHHHHhHHHHHHHHHHHHHHhhc
Q 017282 325 LALLALIVPQIVFQFQYFLKDPIKYDVKYQASAQPFLILGLLVTALATS 373 (374)
Q Consensus 325 ~~l~~l~lpl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gll~~~~~~~ 373 (374)
..+.++..|.++.+.+.+.+|+++.+..++++++.++++|++.+++|++
T Consensus 235 ~l~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (283)
T TIGR01476 235 TIVFLLLVAQIYNQIKLFLRDPQQNYVRYNATANPFYVLGMLAAGFALG 283 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHhChHHhhHHhhhhcHHHHHHHHHHHHHhcC
Confidence 2344566788888888888899999999999999999999999999875
No 5
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=100.00 E-value=1.8e-39 Score=313.48 Aligned_cols=280 Identities=19% Similarity=0.189 Sum_probs=232.4
Q ss_pred ccccchhHHHHHhhhCccchHHHHHHHHHHHHhh----CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccc--cc
Q 017282 77 AAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAAS----GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDRE--ID 150 (374)
Q Consensus 77 ~~~~~~~l~~~l~L~RP~~~~~~~~~~~~G~~~~----g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~--~D 150 (374)
.++.+++++.|++.+||+++..++.|+++|.+.+ +.++|. . .+..++++.++|.++|.+|||+|++ .|
T Consensus 5 ~~~~~~~~~~w~~a~RP~tl~asl~pv~lG~a~a~~~~~~f~~~-----~-~ll~ll~~~l~q~~~N~~NDy~D~~~G~D 78 (304)
T PRK07419 5 TSMSPSRRKLWLAAIKPPMYSVAIMPILVGTAWALGETGVFRLD-----Q-FITFLLAAILILAWENLSNDVFDADTGID 78 (304)
T ss_pred ccCCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCccHH-----H-HHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 4567788999999999999999999999998742 456663 2 3345567778999999999999997 67
Q ss_pred cccCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHH
Q 017282 151 AINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFAL 230 (374)
Q Consensus 151 ~~n~~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~v 230 (374)
+. ++. ...++..+++++...+..+++++++++.++.... +|..+.++++++++++.||.||+++||+++ ||+.+
T Consensus 79 ~~-~~~-~~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~---g~~~l~ig~~g~~~~~~YT~gP~~l~y~gL-GE~~v 152 (304)
T PRK07419 79 KN-KFH-SVVNLTGNKSLVFWLANLFLLLGLLGILAIALQS---DWTVLGLVLLCCFLGYLYQGPPFRLGYQGL-GEPLC 152 (304)
T ss_pred cc-ccc-CcccccCcHHHHHHHHHHHHHHHHHHHHHHHHhh---cHHHHHHHHHHHHHhheccCCCcccCCCCc-hHHHH
Confidence 74 222 2345555799999999999999999999887654 466788999999999999999999999998 99999
Q ss_pred HHHHhHHHHHHH-HHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHHHHH
Q 017282 231 GASYISLPWWAG-QALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQI 309 (374)
Q Consensus 231 g~~~g~lp~~~~-~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l~~l 309 (374)
++++|.+++.+. +.++|.+++..++.++++++.+.+++++||+||+|+|+++||||+|+++|+|++++++..+...+++
T Consensus 153 ~l~~G~l~v~g~~yv~t~~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~ 232 (304)
T PRK07419 153 FLAFGPLAVAAALYSQTPSWSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYA 232 (304)
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHH
Confidence 999998887754 7889999999999999999999999999999999999999999999999999999999988888877
Q ss_pred HHHH-HHhhhhHHHHHHHHHHHHHHHHHHHHHHHhc---CcchHHHHHHHhHHHHHHHHHHHHHH
Q 017282 310 SVAG-YLLGAGKPYYALALLALIVPQIVFQFQYFLK---DPIKYDVKYQASAQPFLILGLLVTAL 370 (374)
Q Consensus 310 ~l~~-~~~~~~~~~~~~~l~~l~lpl~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~gll~~~~ 370 (374)
+++. ...+..+++. .+.++.+|+.++..|.+.+ ++++.+..++.+++.++.+|+++++-
T Consensus 233 ~~i~~v~~g~~p~~~--Ll~ll~lPl~~~~~~~~~~~~~~~~~l~~~l~~t~~~~~l~g~l~~l~ 295 (304)
T PRK07419 233 LELLPVLLGFWPWTT--LLSLLSLPFAIKLIRLVRENHDQPEKVSNSKFIAVRFHFWSGLLLSLG 295 (304)
T ss_pred HHHHHHHHhhhHHHH--HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6443 3444444332 3456788999988887654 56778899999999999999998764
No 6
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=100.00 E-value=2.1e-39 Score=315.48 Aligned_cols=276 Identities=17% Similarity=0.170 Sum_probs=228.3
Q ss_pred hHHHHHhhhCccchHHHHHHHHHHHHhh----CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccC----
Q 017282 83 KWKIRLQLTKPVTWPPLIWGIVCGAAAS----GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE---- 154 (374)
Q Consensus 83 ~l~~~l~L~RP~~~~~~~~~~~~G~~~~----g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n~---- 154 (374)
++|.|++++||+++..++.|+++|.+.+ +.+||. ..+..+++..++|+++|++|||+|++.|..++
T Consensus 2 ~~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~~------~~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~ 75 (317)
T PRK13387 2 SAKLFLKLVEIHTKIASFFPVILGTLFSLYVAKIFDWL------LFLAFMVAMLAFDIATTAINNYMDFKKALDTADYVG 75 (317)
T ss_pred CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccC
Confidence 4789999999999999999999998743 345652 23444556677899999999999997655443
Q ss_pred CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHHHHH
Q 017282 155 PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASY 234 (374)
Q Consensus 155 ~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg~~~ 234 (374)
++|++++|.+|+++++..+..+.+++++++.++.... ++..+.++++++++++.||.||+++||+|+ ||+.+++++
T Consensus 76 ~~~~i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~---g~~~l~igl~g~~~~~~Yt~gP~~l~y~gL-Ge~~v~i~~ 151 (317)
T PRK13387 76 IGNGIGQHGLKPRNVLTVILLMYVVAAILGVYLCMNT---SWLLLVIGLICFAIGILYTGGPLPLSRMPL-GEIFSGLTM 151 (317)
T ss_pred CcchhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh---cHHHHHHHHHHHHHhhhhcCCCcccccCcc-HHHHHHHHH
Confidence 7899999999999999999999999999999887654 566889999999999999999999999996 999999999
Q ss_pred hHHHHHHH-HHHhCCCCHHHHH--------------------HHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecCh
Q 017282 235 ISLPWWAG-QALFGTLTPDIIV--------------------LTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGP 293 (374)
Q Consensus 235 g~lp~~~~-~a~~g~~~~~~~l--------------------l~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~ 293 (374)
|..++.+. +.+++..++..+. .+++.++.+.++++.||+||+|+|+++|+||+|+++|+
T Consensus 152 G~~~v~g~~yv~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~ 231 (317)
T PRK13387 152 GFGIFLLAVYINTNTITIESLLFQGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGR 231 (317)
T ss_pred HHHHHHHHHHHhcCCCchHHHHhcccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcH
Confidence 98776654 6778877776554 78899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHH-HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhc---CcchHHHHHHHhHHHHHHHHHHHHH
Q 017282 294 ETAKWICVGAIDITQISV-AGYLLGAGKPYYALALLALIVPQIVFQFQYFLK---DPIKYDVKYQASAQPFLILGLLVTA 369 (374)
Q Consensus 294 ~~a~~l~~~~~~l~~l~l-~~~~~~~~~~~~~~~l~~l~lpl~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~gll~~~ 369 (374)
|++++++..+..++++.+ .....|..+++++ +.++++|+.++..|.+.+ ++++.+..++.+.+.++.+++++.+
T Consensus 232 ~~a~~l~~~l~~~a~l~~~~~v~~g~lp~~~l--l~ll~lP~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~i 309 (317)
T PRK13387 232 EKGVVLFAILFYASYLAIAVIVLMGYISPWAL--LSFLTLRKPISNLQSFQKEAKDPKYFVIAIRNTVLTNTTFGFLLSA 309 (317)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998887877654 3345554444333 456788999998887654 4455677889999999999998865
Q ss_pred H
Q 017282 370 L 370 (374)
Q Consensus 370 ~ 370 (374)
-
T Consensus 310 ~ 310 (317)
T PRK13387 310 S 310 (317)
T ss_pred H
Confidence 4
No 7
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=100.00 E-value=6.9e-39 Score=309.30 Aligned_cols=276 Identities=21% Similarity=0.263 Sum_probs=228.0
Q ss_pred hHHHHHhhhCccchHHHHHHHHHHHHhh---CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhccccc--ccccc--cCC
Q 017282 83 KWKIRLQLTKPVTWPPLIWGIVCGAAAS---GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDR--EIDAI--NEP 155 (374)
Q Consensus 83 ~l~~~l~L~RP~~~~~~~~~~~~G~~~~---g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~--~~D~~--n~~ 155 (374)
++|+|++++||+++..+++|+++|.+.+ +.+++. . .+..+++..++++++|.+|||+|+ |.|+. ++|
T Consensus 2 ~~~~~~~~~Rp~~~~~~~~p~l~G~~~a~~~~~~~~~-----~-~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~ 75 (293)
T PRK06080 2 TFKAWLELARPKTLPAAFAPVLVGTALAYWLGSFHPL-----L-ALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGP 75 (293)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCccHH-----H-HHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCC
Confidence 4789999999999999999999998753 445542 1 333445677889999999999999 46754 458
Q ss_pred CCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHHHHHh
Q 017282 156 YRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYI 235 (374)
Q Consensus 156 ~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg~~~g 235 (374)
+||+++|++|+++++..+..+.++++++++++.... ++..+.+++++.++++.||.||.++|++++ ||+.+|+.+|
T Consensus 76 ~r~l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~---~~~~~~~~~~~~~~~~~Ys~~p~~~~~~gl-ge~~~~~~~G 151 (293)
T PRK06080 76 LRAIGRGGISPKQVKRAAIAFFGLAALLGLYLVAVS---GWWLLLLGLLCIAAAILYTGGPKPYGYTGL-GELFVGVFFG 151 (293)
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHhhhhcCCCCccCCCCc-HHHHHHHHHH
Confidence 999999999999999999999999988888876543 455788888898999999999999999997 8999999999
Q ss_pred HHHHHH-HHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHHHHHHHHH-
Q 017282 236 SLPWWA-GQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAG- 313 (374)
Q Consensus 236 ~lp~~~-~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l~~l~l~~- 313 (374)
...+.+ .+.+.|++++..++++++.++|+.++++.||++|+|+|+++|+||+|+++|+|++++++..+..++++..+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~~~~ 231 (293)
T PRK06080 152 LVIVLGTYYLQAGTVDSAVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYLCIVLL 231 (293)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHHHHH
Confidence 776654 467788899999999999999999999999999999999999999999999999999999887777765443
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHhc--CcchHHHHHHHhHHHHHHHHHHHHHH
Q 017282 314 YLLGAGKPYYALALLALIVPQIVFQFQYFLK--DPIKYDVKYQASAQPFLILGLLVTAL 370 (374)
Q Consensus 314 ~~~~~~~~~~~~~l~~l~lpl~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~gll~~~~ 370 (374)
...+..++++. +.++.+|+..++.+.+.+ ++++....++.+++.++.+|+++++-
T Consensus 232 ~~~~~~~~~~l--l~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (293)
T PRK06080 232 ALLGLASPWGL--LFLLSLPLAVKAARPVLRKQKPETLIPALKATGKTNLLFGLLFAIG 288 (293)
T ss_pred HHHhhhhHHHH--HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443 345678999988887653 56677888899999999999988653
No 8
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=100.00 E-value=1e-38 Score=311.73 Aligned_cols=272 Identities=34% Similarity=0.524 Sum_probs=208.0
Q ss_pred ccchhHHHHHhhhCccchHHHHHHHHHHHHhh-CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCCC
Q 017282 79 QETNKWKIRLQLTKPVTWPPLIWGIVCGAAAS-GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYR 157 (374)
Q Consensus 79 ~~~~~l~~~l~L~RP~~~~~~~~~~~~G~~~~-g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n~~~R 157 (374)
.-++++|+|+|++||+++. .++|+++|...+ +....+...+...+.++++.+.+..+++|++|||+|+|+|++|+|.|
T Consensus 7 ~~~~~~k~~l~L~kP~t~l-~~~p~~~g~~lA~g~~~~~~~~~~l~l~~~~~~~~L~~~a~~~iND~~D~~~D~~n~rtR 85 (331)
T PRK12392 7 GFVDKIRAHLELLDPVTWI-SVFPCLAGGVMASGAMQPTLHDYLLLLALFLMYGPLGTGFSQSVNDYFDLELDRVNEPTR 85 (331)
T ss_pred chhHHHHHHHHHHCHHHHH-HHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHHHHHHHHHhHHhcceeecccccCCCCC
Confidence 4456899999999998888 778888776643 32211111111122333444555667889999999999999999999
Q ss_pred CccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHhheecCCCCcccccccchhhHHHHHHHhH
Q 017282 158 PIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHD-FPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYIS 236 (374)
Q Consensus 158 pl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~-~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg~~~g~ 236 (374)
|+++|++|+++++.+..++.++++++++++....+.. .+..+..++++.+++++||.||+++||+++.++..+|++++.
T Consensus 86 pl~~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS~~P~~lKr~~~~g~~~vGl~~~~ 165 (331)
T PRK12392 86 PIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYSAPPLKLKKNILTSAPAVGFSYGF 165 (331)
T ss_pred CCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhcCCchhhhccchhHHHHHHHHHHH
Confidence 9999999999999999999999999998886543211 233445567788899999999999999998899999999998
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHHHHH--HHHHH
Q 017282 237 LPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQI--SVAGY 314 (374)
Q Consensus 237 lp~~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l~~l--~l~~~ 314 (374)
.+++++.+..|++++..+++++..++|+.+++++||++|+|+|++.|+||+|+++|+++++++....+.++.+ ...++
T Consensus 166 ~~~~~~~a~~g~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~~~~~~~~~~~ 245 (331)
T PRK12392 166 ITFLSANALFSDIRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDLVFAVFAWLAW 245 (331)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 8887777788989888888888899999999999999999999999999999999999999887765533433 34556
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHH
Q 017282 315 LLGAGKPYYALALLALIVPQIVFQFQYFLKDPIKYDVKYQ 354 (374)
Q Consensus 315 ~~~~~~~~~~~~l~~l~lpl~~~~~~~~~~~~~~~~~~~~ 354 (374)
..+.+..+|... ++..++++.|.+ ..+||++....++
T Consensus 246 ~~~~~~~~~~~~--~~~~~~~~~q~~-l~r~p~~~~~~~~ 282 (331)
T PRK12392 246 SWGFTVLMYFIL--VGLVLNIVIQIQ-LYRDPKGGISFMQ 282 (331)
T ss_pred HhcccHHHHHHH--HHHHHHHHHHHH-HHhChhhhhHHHh
Confidence 667776666543 345667777765 4566665444333
No 9
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.2e-38 Score=307.87 Aligned_cols=273 Identities=17% Similarity=0.116 Sum_probs=213.8
Q ss_pred hhHHHHHhhhCccchHHHHHHHHHHHHhh----CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccC---
Q 017282 82 NKWKIRLQLTKPVTWPPLIWGIVCGAAAS----GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--- 154 (374)
Q Consensus 82 ~~l~~~l~L~RP~~~~~~~~~~~~G~~~~----g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n~--- 154 (374)
+++|.|++++||++++.++.|+++|.+.+ ++++|. ..+..+++..++|+++|++|||+|++.|..++
T Consensus 2 ~~~~~~~~~~Rp~tl~~s~~~v~lG~a~a~~~~~~f~~~------~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt 75 (296)
T PRK05951 2 QNAKLFFIFTRPWSFVMTAIVAFFSIAYGYYLFRSFDPL------LGALMLLGYFLLHASLNVFNDYKDYVLDCDHHETT 75 (296)
T ss_pred ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCcCHH------HHHHHHHHHHHHHHHHHHHHhHHHHhcCCcccccc
Confidence 47999999999999999999999998742 456663 23445567778999999999999965554444
Q ss_pred --CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHHH
Q 017282 155 --PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGA 232 (374)
Q Consensus 155 --~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg~ 232 (374)
|+||+++|++|+++++..+.++..+++.++.++.... ++..+.++++++++++.||.||+++||+++ ||+.+++
T Consensus 76 ~~~~r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~---~~~~l~l~~~~~~~~~~Yt~~P~~lky~gl-Ge~~v~~ 151 (296)
T PRK05951 76 GYRQHPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDR---GIGAVTLALLGVFLWTCYMGPPFFLKYRWL-GEHLVFY 151 (296)
T ss_pred CCCCCccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHcCCCcccCCCCc-hHHHHHH
Confidence 7899999999999999999998888888877764432 455788899999999999999999999988 8999999
Q ss_pred HHhHHHHHHH-HHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHHHHHHH
Q 017282 233 SYISLPWWAG-QALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISV 311 (374)
Q Consensus 233 ~~g~lp~~~~-~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l~~l~l 311 (374)
++|..++++. +.++|.+++..+..+++.++++.++.+.||+||+|+|+++|+||+|+++|+|++ +++......+++.+
T Consensus 152 ~~g~~~vlg~~~~~~~~~~~~~~~~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~~~~~ 230 (296)
T PRK05951 152 AWSHMLVMGLIYVWLGNLSSPNLLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSPYVIL 230 (296)
T ss_pred HHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHHHHHH
Confidence 9997766654 678899999999999999999999999999999999999999999999999999 66555555555443
Q ss_pred HH-HHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHhHHHHHHHHHHHHH
Q 017282 312 AG-YLLGAGKPYYALALLALIVPQIVFQFQYFLKDPIKYDVKYQASAQPFLILGLLVTA 369 (374)
Q Consensus 312 ~~-~~~~~~~~~~~~~l~~l~lpl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gll~~~ 369 (374)
+. ...+..+.+ ..+..+.+|..+...+...++.++.+ ...+.+.++.+|+++++
T Consensus 231 ~~~~~~g~~~~~--~l~~ll~lp~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~l~~~ 285 (296)
T PRK05951 231 QILLIAILTPLI--SLWALLSLLVAYALCLWQLRKFPPDP--DEATVQLFMLFGYLYIL 285 (296)
T ss_pred HHHHHHhhhhHH--HHHHHHHHHHHHHHHHHHHhhCcccc--cHHHHHHHHHHHHHHHH
Confidence 32 233333322 22345677888777775543332222 34688888888887765
No 10
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=100.00 E-value=1.6e-38 Score=304.75 Aligned_cols=269 Identities=17% Similarity=0.193 Sum_probs=221.9
Q ss_pred CccchHHHHHHHHHHHHhh---CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccc--ccccc--CCCCCcccccc
Q 017282 92 KPVTWPPLIWGIVCGAAAS---GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDRE--IDAIN--EPYRPIPSGAI 164 (374)
Q Consensus 92 RP~~~~~~~~~~~~G~~~~---g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~--~D~~n--~~~Rpl~sG~i 164 (374)
||++++.++.|+++|.+.+ +.++|. . .+..+++..++|.++|.+|||+|++ .|+.+ +|+|++++|.+
T Consensus 1 Rp~tl~~s~~pv~lG~ala~~~~~f~~~-----~-~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~i 74 (284)
T TIGR00751 1 RPKTLPLAIAPIVAGTALAAWLHAFVWL-----V-ALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLI 74 (284)
T ss_pred CCchHHHHHHHHHHHHHHHHHcCCccHH-----H-HHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCC
Confidence 8999999999999998743 456653 2 3334456778999999999999995 36543 48999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhccc---hhHHHHHHHHHHHhheecCCCCcccccccchhhHHHHHHHhHHHHHH
Q 017282 165 SENEVITQIWVLLLAGLGLAGLLDVWAGHD---FPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWA 241 (374)
Q Consensus 165 s~~~a~~~~~~l~~l~l~l~~~l~~~~g~~---~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg~~~g~lp~~~ 241 (374)
++++++..+..+++++++++.++.+..+.. .+..+.+++++++.++.||.||+++||+++ ||+.+++++|.+++++
T Consensus 75 s~~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg~~~~~~~~~Yt~gP~~l~y~gL-GE~~v~i~~G~l~v~g 153 (284)
T TIGR00751 75 TPREVKTALITSVALGALSGLVLALLAAPNLSDLFWFIALGALCIAAAITYTVGSKPYGYAGL-GDISVLVFFGPLAVLG 153 (284)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHhHhhcCCCCccccCch-HHHHHHHHHHHHHHHH
Confidence 999999999999999999999887654310 014678899999999999999999999998 8999999999888776
Q ss_pred H-HHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHHHHHHHHHH-Hhhhh
Q 017282 242 G-QALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAGY-LLGAG 319 (374)
Q Consensus 242 ~-~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l~~l~l~~~-~~~~~ 319 (374)
. +.++|++++..++.+++.++++.++++.||+||+|+|+++||||+|+++|+|++++++..++..+++..+.. ..+..
T Consensus 154 ~~yvq~~~~~~~~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~~~~~~~~ 233 (284)
T TIGR00751 154 TQYLQAHRVDWVGILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFVFMLATPI 233 (284)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4 688999999999999999999999999999999999999999999999999999999988877777654433 33433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--cCcchHHHHHHHhHHHHHHHHHHHHH
Q 017282 320 KPYYALALLALIVPQIVFQFQYFL--KDPIKYDVKYQASAQPFLILGLLVTA 369 (374)
Q Consensus 320 ~~~~~~~l~~l~lpl~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~gll~~~ 369 (374)
++ +. .+.++.+|+.....|.+. +++++.+..++++++.++++|+++++
T Consensus 234 p~-~~-ll~ll~lPl~~~~~~~~~~~~~~~~l~~~l~~t~~~~~l~~~l~~i 283 (284)
T TIGR00751 234 SW-WC-VLFLLAAPLLLKAAGPVRSGRGPRELRPVLRDTGLAMLLWNLLFAL 283 (284)
T ss_pred hH-HH-HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33 22 345678899998888664 46678899999999999999999875
No 11
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=100.00 E-value=7.3e-38 Score=300.33 Aligned_cols=270 Identities=21% Similarity=0.193 Sum_probs=221.3
Q ss_pred HHhhhCccchHHHHHHHHHHHHhh----CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhccccccc--ccccCCCCCcc
Q 017282 87 RLQLTKPVTWPPLIWGIVCGAAAS----GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREI--DAINEPYRPIP 160 (374)
Q Consensus 87 ~l~L~RP~~~~~~~~~~~~G~~~~----g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~--D~~n~~~Rpl~ 160 (374)
|++.+||+++..++.|+++|.+.+ +.+||. .. +..+++..++|.++|.+|||+|++. |+.+. ....
T Consensus 2 w~~a~Rp~tl~~s~~pv~lG~alA~~~~~~f~~~-----~~-ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~--~~~~ 73 (285)
T TIGR02235 2 WLAAIKPPLYSVAVMPILVGTAVAWGQGGVFHLD-----RF-ALFLIAAILILAWINLTNDVFDSDTGIDRFKL--HSIV 73 (285)
T ss_pred hHHHhhhhHHHHHHHHHHHHHHHHHHcCCCcCHH-----HH-HHHHHHHHHHHHHHHHHHhHHHHhcCCCcccc--CCcc
Confidence 789999999999999999998743 456763 22 3344567789999999999999964 77432 1122
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHHHHHhHHHHH
Q 017282 161 SGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW 240 (374)
Q Consensus 161 sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg~~~g~lp~~ 240 (374)
++..+++++...+.++..++++++.++.... ++..+.++++++++++.||.||+++||+++ ||+++++++|.+++.
T Consensus 74 ~~~~~~~~v~~~~~~~~~ia~~~g~~L~~~~---~~~~l~lg~~g~~~~~~Yt~gP~~l~y~gL-GE~~v~l~~G~l~v~ 149 (285)
T TIGR02235 74 NLTGSRSLVFWLANFFLLIGLVGIAALSWRW---QITVLALVGLCCFLGYLYQGPPFRLGYQGL-GEPICWLCFGPLAIA 149 (285)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHhhcCCCcccCCCCc-cHHHHHHHHHHHHHH
Confidence 3334679999989999999999998887654 466788999999999999999999999998 899999999988876
Q ss_pred H-HHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHHHHHHHHH-HHhhh
Q 017282 241 A-GQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAG-YLLGA 318 (374)
Q Consensus 241 ~-~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l~~l~l~~-~~~~~ 318 (374)
+ .+.++|++++..++.+++.++.+.++++.||+||+|+|+++||||+|+++|+|++++++..++..++++++. ...+.
T Consensus 150 g~~yvqt~~~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~~ 229 (285)
T TIGR02235 150 AALYAQSQSFSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAVIGGF 229 (285)
T ss_pred HHHHHhCCcCcHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5 478899999999999999999999999999999999999999999999999999999999888888876443 34443
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc---CcchHHHHHHHhHHHHHHHHHHHHHH
Q 017282 319 GKPYYALALLALIVPQIVFQFQYFLK---DPIKYDVKYQASAQPFLILGLLVTAL 370 (374)
Q Consensus 319 ~~~~~~~~l~~l~lpl~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~gll~~~~ 370 (374)
.++ ...+.++++|+.++..|.+.+ ++++.+..++.+++.++.+|+++++-
T Consensus 230 ~p~--~~ll~ll~lPl~~~~~~~~~~~~~~~~~l~~~l~~t~~~~~~~g~l~~~g 282 (285)
T TIGR02235 230 LPW--TTLLALASIPWAVKLIRLVRQNHNNPEQISNCKFIAVRFHFLSGILLTLG 282 (285)
T ss_pred hHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 223566788999988887643 66677889999999999999998764
No 12
>PLN02922 prenyltransferase
Probab=100.00 E-value=1.1e-37 Score=302.60 Aligned_cols=278 Identities=22% Similarity=0.238 Sum_probs=216.2
Q ss_pred ccchhHHHHHhhhCccchHHHHHHHHHHHHhh----CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccc--cccc
Q 017282 79 QETNKWKIRLQLTKPVTWPPLIWGIVCGAAAS----GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDRE--IDAI 152 (374)
Q Consensus 79 ~~~~~l~~~l~L~RP~~~~~~~~~~~~G~~~~----g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~--~D~~ 152 (374)
++.+++|.|++++||+++..+++|+++|.+.+ +.++|. . .+..+++..++|.++|++|||+|++ .|+.
T Consensus 10 ~~~~~~~~w~~a~Rp~tl~~s~~pv~lG~a~A~~~~g~f~~~-----~-~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~ 83 (315)
T PLN02922 10 EELSRATLWWRAIKLPMYSVALVPLTVGAAAAYLQTGLFDAR-----R-YGTLLLSSVLVITWLNLSNDAYDADTGVDKN 83 (315)
T ss_pred CCccHHHHHHHHhCcchHHHHHHHHHHHHHHHHHcCCCccHH-----H-HHHHHHHHHHHHHHHHHHhhhhHhccCcCcc
Confidence 67789999999999999999999999998742 567763 2 2334556778999999999999986 5765
Q ss_pred cC--CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHH
Q 017282 153 NE--PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFAL 230 (374)
Q Consensus 153 n~--~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~v 230 (374)
++ +.|+ .| |+++++..+..+.++++. +.++.... ..++..+++|++++++++.||.||+|+||+|+ ||+.+
T Consensus 84 ~~~~~~~~--~~--s~~~v~~~~~~~~~la~~-g~~ll~~~-~~~~~~l~iG~~g~~~~~~Yt~gP~pl~y~gL-GE~~v 156 (315)
T PLN02922 84 KKESVVNL--VG--SRRGVLAAAIGCLALGAA-GLVWASLV-AGNIRVILLLAAAILCGYVYQCPPFRLSYKGL-GEPLC 156 (315)
T ss_pred cCCCCCCc--cc--CHHHHHHHHHHHHHHHHH-HHHHHHHH-ccChHHHHHHHHHHHHHHHHhcCCcccccCcc-hHHHH
Confidence 43 2344 33 999999999988888874 44443221 01466789999999999999999999999998 89999
Q ss_pred HHHHhHHHHHHH-HHHhC----------CCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHH
Q 017282 231 GASYISLPWWAG-QALFG----------TLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWI 299 (374)
Q Consensus 231 g~~~g~lp~~~~-~a~~g----------~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l 299 (374)
+++||.+++.+. +.++| .++++.++.++++++++.+++++||+||+|+|+++||||+|+++|+|+++++
T Consensus 157 ~i~fG~l~v~g~y~~~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l 236 (315)
T PLN02922 157 FAAFGPLATTAFYLALASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRV 236 (315)
T ss_pred HHHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHH
Confidence 999998877654 46666 3567788899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHHHHHHHh---cCcchHHHHHHHhHHHHHHHHHHHHHH
Q 017282 300 CVGAIDITQISVAGY-LLGAGKPYYALALLALIVPQIVFQFQYFL---KDPIKYDVKYQASAQPFLILGLLVTAL 370 (374)
Q Consensus 300 ~~~~~~l~~l~l~~~-~~~~~~~~~~~~l~~l~lpl~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~gll~~~~ 370 (374)
+..++..+++.++.. ..+..++ +...+.++.+|......+... +++.+.....+.+++.++++|+++++-
T Consensus 237 ~~~l~~~~y~~~i~~v~~~~~p~-~~~l~~ll~lpl~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~l~g~ll~~g 310 (315)
T PLN02922 237 VRWAVLLLYSLLAALGLLKALPL-PCALLCFLTLPLGKLVVDFVEKNHKDNAKIFMAKYYCVRLHALFGAALALG 310 (315)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888887665433 3443333 222234456776655555432 235566777888999999999998764
No 13
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=100.00 E-value=1.5e-37 Score=297.99 Aligned_cols=270 Identities=27% Similarity=0.350 Sum_probs=210.3
Q ss_pred hHHHHHhhhCccchHHHHHHHHHHHHhhC--CCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCCCCcc
Q 017282 83 KWKIRLQLTKPVTWPPLIWGIVCGAAASG--NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIP 160 (374)
Q Consensus 83 ~l~~~l~L~RP~~~~~~~~~~~~G~~~~g--~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n~~~Rpl~ 160 (374)
++|+|+|++||+.+...+.|+++|+..+. .+++. .++..++++++.++++|++|||+|+|+|++|+|+||++
T Consensus 2 ~~~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~------~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~ 75 (279)
T PRK09573 2 SIKAYFELIRPKNCIGASIGAIIGYLIASNFKIDLK------GIILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIP 75 (279)
T ss_pred CHHHHHHHHhHhHHHHHHHHHHHHHHHHccCCcchH------HHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcC
Confidence 57999999999999999999999987542 23331 23334556778899999999999999999999999999
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHHHHHhHHHHH
Q 017282 161 SGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW 240 (374)
Q Consensus 161 sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg~~~g~lp~~ 240 (374)
+|++|+++++.++..+.++++.+++++ ++.++.+++++.++.+.||. ++||++.+||+++|..+|..++.
T Consensus 76 sG~is~~~a~~~~~~l~~~~~~l~~~l-------~~~~~~l~~~~~~~~~~Ys~---~lKr~~~~~~~~vg~~~G~~~~~ 145 (279)
T PRK09573 76 SGRISLKEAKIFSITLFIVGLILSIFI-------NIYAFLIALLNSILLYLYAK---DLKKTGLIGNLIVAYLTGLSFIF 145 (279)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHH---HHhcCCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888775 45577888888888999994 68999988999999999988877
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHH-HHHHHHHHHHhh-h
Q 017282 241 AGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAID-ITQISVAGYLLG-A 318 (374)
Q Consensus 241 ~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~-l~~l~l~~~~~~-~ 318 (374)
++.+..+ ....++++...++|+.+++++||++|+|+|+++|+||+|+++|+|++.++...... ...++.+++..+ .
T Consensus 146 g~~~~~~--~~~~~~l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 223 (279)
T PRK09573 146 GGLAVFN--VLRIIILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVLSPLPYFLGIF 223 (279)
T ss_pred HHHHHcc--chHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7665554 34455667778899999999999999999999999999999999999887765433 333445666655 4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHhHHHHHHHHHHHHHHh
Q 017282 319 GKPYYALALLALIVPQIVFQFQYFLKDPIKYDVKYQASAQPFLILGLLVTALA 371 (374)
Q Consensus 319 ~~~~~~~~l~~l~lpl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gll~~~~~ 371 (374)
++.|+ .....+..++++..++...++.++...+.++..+.+++.|++...++
T Consensus 224 ~~~y~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~m~~g~~~~~~~ 275 (279)
T PRK09573 224 GIYYL-IVVIICDILFIIAMLILLKNPSIEGASKASKYLKIIMILGLIAFLIG 275 (279)
T ss_pred HHHHH-HHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55444 33344456666666665544444556677778888888777765443
No 14
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=100.00 E-value=6.6e-37 Score=290.29 Aligned_cols=280 Identities=19% Similarity=0.241 Sum_probs=227.9
Q ss_pred ccchhHHHHHhhhCccchHHHHHHHHHHHHhh---C-CCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccc--cccc
Q 017282 79 QETNKWKIRLQLTKPVTWPPLIWGIVCGAAAS---G-NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDRE--IDAI 152 (374)
Q Consensus 79 ~~~~~l~~~l~L~RP~~~~~~~~~~~~G~~~~---g-~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~--~D~~ 152 (374)
...++.+.|++++||++++.++.|+++|.+.+ + .++| +..++ ++++..++|..+|..|||+|++ .|.+
T Consensus 3 ~~~~~~~~wl~~~rP~Tl~aai~Pv~~G~a~A~~~~~~f~~-----~~~ll-~Li~~~~iq~~vN~~NdY~D~~KG~D~~ 76 (303)
T COG1575 3 QKTSKTQLWLELARPKTLPAAIAPVIVGTALAFWYGKSFNL-----LVALL-ALIAAILLQILVNLANDYFDYKKGTDTH 76 (303)
T ss_pred cccHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHccchHH-----HHHHH-HHHHHHHHHHHHHHHHhhhhhhcCCCCC
Confidence 34567799999999999999999999998743 2 4554 33344 4556678999999999999996 4653
Q ss_pred ----cCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhH
Q 017282 153 ----NEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNF 228 (374)
Q Consensus 153 ----n~~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l 228 (374)
.+.++.+....++++..+.....+...+++++..+.... +|.++.+|+++++.++.||.||+|++|.|+ ||+
T Consensus 77 g~~~~~~~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s---~~~~l~lG~l~~~~g~~YTgGp~PlgY~gL-GEi 152 (303)
T COG1575 77 GPDRLKQSGLIVRQSMKPALILSLALFLLAGLALLGVILAALS---DWLVLLLGLLCIAAGILYTGGPFPLGYMGL-GEI 152 (303)
T ss_pred CCccccccceeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHheeeeccCCcCcccCCH-HHH
Confidence 224667777788888888888888777777777665443 566899999999999999999999999998 899
Q ss_pred HHHHHHhHHHHHH-HHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHHH
Q 017282 229 ALGASYISLPWWA-GQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDIT 307 (374)
Q Consensus 229 ~vg~~~g~lp~~~-~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l~ 307 (374)
.+|++||.+.+.+ ++.+++++++..++.++++++.+.+++..||+||+|+|+++||+|+||++|+++++.++..++..+
T Consensus 153 ~~~vffG~l~v~g~~yiqt~~~~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a 232 (303)
T COG1575 153 FVGVFFGPLIVLGAYYIQTGRLSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVA 232 (303)
T ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHHH
Confidence 9999999887765 478999999999999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHH-HHhhhhHHHHHHHHHHHHHHHHHHHHHHHh--cCcchHHHHHHHhHHHHHHHHHHHHHH
Q 017282 308 QISVAG-YLLGAGKPYYALALLALIVPQIVFQFQYFL--KDPIKYDVKYQASAQPFLILGLLVTAL 370 (374)
Q Consensus 308 ~l~l~~-~~~~~~~~~~~~~l~~l~lpl~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~gll~~~~ 370 (374)
++..+. ...+..+++++ +..+.+|+.++..|.+. +.|.+....++.+.+...++++++..-
T Consensus 233 ~l~~~~~~i~~~~~~~~l--l~ll~~Pl~ir~~r~v~~~~~~~~~~p~l~~~~~~~~~~~~l~~~~ 296 (303)
T COG1575 233 YLAIVIFVILGLFPVWGL--LFLLALPLAIRAARPVRQNQVPATLVPMLKNTVKANLLWNLLLAVG 296 (303)
T ss_pred HHHHHHHHHHHhchHHHH--HHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 876544 45555554442 44578899999999774 445567778888888888888877543
No 15
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=6.7e-36 Score=287.46 Aligned_cols=257 Identities=20% Similarity=0.258 Sum_probs=199.8
Q ss_pred cchhHHHHHhhhCcc---chHHHHHHHHHHHHhh--CC-CCCchhhHHHHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 017282 80 ETNKWKIRLQLTKPV---TWPPLIWGIVCGAAAS--GN-FHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAIN 153 (374)
Q Consensus 80 ~~~~l~~~l~L~RP~---~~~~~~~~~~~G~~~~--g~-~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n 153 (374)
..+++++|+|++||+ ....+++|+++|...+ +. +++ . ..+..+++++++++++|++|||+|+|.|++|
T Consensus 3 ~~~~~~~~~~l~R~~kp~~~~l~~~~~~~g~~la~~~~~~~~-----~-~~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~ 76 (285)
T PRK12847 3 ILMKFLAYFKLMRLHKPIGILLVFFPTLFGLLLASHSLLPDI-----S-LLVLFIIGSVLMRSAGCIINDIFDRKIDKHV 76 (285)
T ss_pred hHHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHhCccCCcH-----H-HHHHHHHHHHHHHHHHHHHHhHHHhhhccCC
Confidence 456899999988777 4567889999998754 22 232 1 2344555667899999999999999999987
Q ss_pred C--CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHH
Q 017282 154 E--PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALG 231 (374)
Q Consensus 154 ~--~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg 231 (374)
+ ++||+++|++|+++++.++.++.++++.+++.+ ++.++.+++++.++.+.||. .||++.+++++.|
T Consensus 77 ~Rt~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~~-------~~~~~~~~~~~~~~~~~Y~~----~Kr~~~~~~~~~g 145 (285)
T PRK12847 77 ARTKNRPLASGALSVKQALILLFILLLIALVILLLL-------NKTTIYLSFIAVILIVLYPL----MKRFFYWPQLFLG 145 (285)
T ss_pred CcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHhccc----cccCCcccHHHHH
Confidence 6 699999999999999999999988888777655 56678888888888999983 8888888999999
Q ss_pred HHHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHHHH-HH
Q 017282 232 ASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQ-IS 310 (374)
Q Consensus 232 ~~~g~lp~~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l~~-l~ 310 (374)
++++..++.++.+++|++++..++++++.++|+.+++++|+++|+|+|+++|+||+|+++|++++.++........+ ++
T Consensus 146 ~~~~~~~l~~~~a~~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~ 225 (285)
T PRK12847 146 FTFNMGILMAFAAVQNQLDIEAILLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLILWL 225 (285)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHHHH
Confidence 99887666677788899999999999999999999999999999999999999999999999999887765444433 34
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH-hcCcchHHHHHHH
Q 017282 311 VAGYLLGAGKPYYALALLALIVPQIVFQFQYF-LKDPIKYDVKYQA 355 (374)
Q Consensus 311 l~~~~~~~~~~~~~~~l~~l~lpl~~~~~~~~-~~~~~~~~~~~~~ 355 (374)
++++..+.++++|...+. ..-..+.+.+.. .+|++++.+.++.
T Consensus 226 ~~~~~~~~~~~~y~~~~~--~~~~l~~~~~~~~~~~~~~~~~~f~~ 269 (285)
T PRK12847 226 ILGIISSLHNIFYLAILA--AAGIFYYQYKLLDFDNPANCMYAFKA 269 (285)
T ss_pred HHHHHhcCcHHHHHHHHH--HHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 567777777777764332 222333333322 3445555544443
No 16
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=6.5e-36 Score=286.59 Aligned_cols=243 Identities=28% Similarity=0.398 Sum_probs=187.6
Q ss_pred chhHHHHHhhhCccchHHHHHHHHHHHHhhC-CCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCCCCc
Q 017282 81 TNKWKIRLQLTKPVTWPPLIWGIVCGAAASG-NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPI 159 (374)
Q Consensus 81 ~~~l~~~l~L~RP~~~~~~~~~~~~G~~~~g-~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n~~~Rpl 159 (374)
++++++|+|++||+.+.....++++|++.+. .+++. . ++..+++++++++++|++|||+|+|+|++|+|+||+
T Consensus 1 ~~~l~~~~~l~R~~~~~~~~~~~~~g~~la~~~~~~~-----~-~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl 74 (279)
T PRK12884 1 RTKMKAYLELLRPEHGLMAGIAVVLGAIIALGGLPLD-----E-ALLGFLTAFFASGSANALNDYFDYEVDRINRPDRPI 74 (279)
T ss_pred ChHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCchH-----H-HHHHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCC
Confidence 3589999999999999999999999987653 33321 1 333456677899999999999999999999999999
Q ss_pred cccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHHHHHhHHHH
Q 017282 160 PSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPW 239 (374)
Q Consensus 160 ~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg~~~g~lp~ 239 (374)
++|++|+++++.++.++.+++++++..+ ++..+.+++++.+.++.||. ++||+++++|+++|...+..+.
T Consensus 75 ~~G~is~~~a~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~~~~~~Ys~---~lK~~~~~~~~~~~~~~~~~~~ 144 (279)
T PRK12884 75 PSGRISRREALLLAILLFILGLIAAYLI-------SPLAFLVVILVSVLGILYNW---KLKEYGLIGNLYVAFLTGMTFI 144 (279)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHH---hhccccchhHHHHHHHHHHHHH
Confidence 9999999999999999998998888776 45567777788888999995 7899998899999988876555
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHHHHH-HHHHHHhhh
Q 017282 240 WAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQI-SVAGYLLGA 318 (374)
Q Consensus 240 ~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l~~l-~l~~~~~~~ 318 (374)
.++.+. ++.+...++++...++|+.+.++.||++|+|+|+++|+||+|+++|+|++++++.....+..+ +.+++..+.
T Consensus 145 ~g~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (279)
T PRK12884 145 FGGIAV-GELNEAVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYLFGI 223 (279)
T ss_pred HHHHHh-CCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555444 444446777788889999999999999999999999999999999999999877665444443 344455554
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 017282 319 GKPYYALALLALIVPQIVFQFQ 340 (374)
Q Consensus 319 ~~~~~~~~l~~l~lpl~~~~~~ 340 (374)
..++|..........+++...+
T Consensus 224 ~~~~y~~~~~~~~~~~l~~~~~ 245 (279)
T PRK12884 224 FNILYLAPVLVADLIFLYSAYS 245 (279)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 3344543333333333333334
No 17
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.2e-35 Score=284.55 Aligned_cols=244 Identities=30% Similarity=0.369 Sum_probs=187.5
Q ss_pred hHHHHHhhhCccchHHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCCCCcccc
Q 017282 83 KWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSG 162 (374)
Q Consensus 83 ~l~~~l~L~RP~~~~~~~~~~~~G~~~~g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n~~~Rpl~sG 162 (374)
++|+|+|++||+++..+..++++|+..+.....+ . ...+..+++++++++++|++|||+|+|+|++|+|+||+++|
T Consensus 3 ~~~~~~~l~Rp~~~~~~~~~~~~g~~~a~~~~~~---~-~~~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~G 78 (276)
T PRK12882 3 TVRGYLELTRPVNAVVAGVAAFIGAFIAGGILSS---P-SLTGLAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPSG 78 (276)
T ss_pred CHHHHHHHHhhhHHHHHHHHHHHHHHHhccccch---H-HHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCCC
Confidence 5899999999999999999999999865322111 1 11344556677899999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHHHHHhHHHHHHH
Q 017282 163 AISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAG 242 (374)
Q Consensus 163 ~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg~~~g~lp~~~~ 242 (374)
++|+++++.++.++.++++++++.+ ++..+.+++++.++.+.||. ++||++.+||+.+|...|..+.+++
T Consensus 79 ~is~~~a~~~~~~l~~~g~~~~~~l-------~~~~~~~~~~~~~~~~~Yt~---~lK~~~~~g~~~vg~~~g~~~~~g~ 148 (276)
T PRK12882 79 AVSPRGALAFSILLFAAGVALAFLL-------PPLCLAIALFNSLLLVLYAE---TLKGTPGLGNASVAYLTGSTFLFGG 148 (276)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHH---HHhcccchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888776 45567778888888899985 7999998899999988887666555
Q ss_pred HHHhCC-CCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHHHH-HHHHHHHh-hhh
Q 017282 243 QALFGT-LTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQ-ISVAGYLL-GAG 319 (374)
Q Consensus 243 ~a~~g~-~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l~~-l~l~~~~~-~~~ 319 (374)
.+ .++ .....+.+++..++|..+.+++||++|+|+|+++|+||+|+++|+|++.++......... ++.+++.. +.+
T Consensus 149 ~~-~~~~~~~~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (276)
T PRK12882 149 AA-VGTEGLLALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAASPLPYLLSTFG 227 (276)
T ss_pred HH-hcccchHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 43 343 334456677788889999999999999999999999999999999999987665443333 34445433 345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 017282 320 KPYYALALLALIVPQIVFQFQYF 342 (374)
Q Consensus 320 ~~~~~~~l~~l~lpl~~~~~~~~ 342 (374)
..|+ ..........++.+++..
T Consensus 228 ~~y~-~~~~~~~~~~l~~~~~~~ 249 (276)
T PRK12882 228 LWYL-VLVAPADLVMLAAAYRSL 249 (276)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHH
Confidence 4444 333334444555555544
No 18
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=100.00 E-value=1.5e-35 Score=284.57 Aligned_cols=256 Identities=23% Similarity=0.276 Sum_probs=198.4
Q ss_pred chhHHHHHhhhC---ccchHHHHHHHHHHHHhh--CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccC-
Q 017282 81 TNKWKIRLQLTK---PVTWPPLIWGIVCGAAAS--GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE- 154 (374)
Q Consensus 81 ~~~l~~~l~L~R---P~~~~~~~~~~~~G~~~~--g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n~- 154 (374)
++++++|+|++| |+.....++|+++|+..+ +.+++. .++..+++.+++++++|++|||+|+|+|++|+
T Consensus 2 ~~~~~~y~~L~R~~kp~~~~l~~~p~~~g~~la~~~~~~~~------~~~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~R 75 (282)
T PRK12848 2 QNRLLAYARLMRLDKPIGTLLLLWPTLWALWLAADGIPDLW------VLVVFVLGVFLMRAAGCVINDYADRDFDGHVKR 75 (282)
T ss_pred chhHHHHHHHHCccchHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHHHHHHhhHHhccCCCCCC
Confidence 468999999996 667788889999998754 223321 22334455567899999999999999999876
Q ss_pred -CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHHHH
Q 017282 155 -PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGAS 233 (374)
Q Consensus 155 -~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg~~ 233 (374)
|+||+++|++|++++..++..+.++++.+++.+ ++..+.+++++.+..+.|+ ..||++.+++++.|+.
T Consensus 76 t~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~l-------~~~~~~l~~~~~~~~~~Y~----~~Kr~~~~~~~~~g~~ 144 (282)
T PRK12848 76 TKNRPLASGAVSEKEALALFVVLVLVAFLLVLTL-------NTLTIWLSVAALALAWIYP----FMKRYTHLPQVVLGAA 144 (282)
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHH----hHHhcCcccHHHHHHH
Confidence 689999999999999999999999988877665 4556778888888889995 3788888899999999
Q ss_pred HhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHH-HHHHHHHHHH
Q 017282 234 YISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVG-AIDITQISVA 312 (374)
Q Consensus 234 ~g~lp~~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~-~~~l~~l~l~ 312 (374)
+|..+.+++.++.|++++.++++++..++|+...++.|+++|+|+|+++|+||+|+++|++++.++... ......+++.
T Consensus 145 ~g~~~~~g~~a~~~~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~ 224 (282)
T PRK12848 145 FGWGIPMAFAAVQGSVPLEAWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIGLLQLATLALLAWA 224 (282)
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccccHHHHHHHHHHHHHHHHHH
Confidence 887666777788899999999999999999999999999999999999999999999999988876543 2333344566
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHH-hcCcchHHHHHHH
Q 017282 313 GYLLGAGKPYYALALLALIVPQIVFQFQYF-LKDPIKYDVKYQA 355 (374)
Q Consensus 313 ~~~~~~~~~~~~~~l~~l~lpl~~~~~~~~-~~~~~~~~~~~~~ 355 (374)
++..+.++.|+.. +....+.+.+ +.+.. .+|++++++.++.
T Consensus 225 ~~~~~~~~~y~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~F~~ 266 (282)
T PRK12848 225 GWLLGLGWAYYWG-LLVAAALFVY-QQKLIRDREREACFKAFLN 266 (282)
T ss_pred HHHhcCcHHHHHH-HHHHHHHHHH-HHHHcCCCCHHHHHHHHHh
Confidence 7777777766643 2222333333 33322 4566677776655
No 19
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=1.4e-35 Score=285.69 Aligned_cols=228 Identities=22% Similarity=0.267 Sum_probs=187.7
Q ss_pred cchhHHHHHhhhCccc---hHHHHHHHHHHHHhh--CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccC
Q 017282 80 ETNKWKIRLQLTKPVT---WPPLIWGIVCGAAAS--GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE 154 (374)
Q Consensus 80 ~~~~l~~~l~L~RP~~---~~~~~~~~~~G~~~~--g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n~ 154 (374)
.++++++|+|++||+. ..+.++|+++|+..+ +.+++. .++..+++.+++++++|++|||+|+|+|++|+
T Consensus 5 ~~~~~~~y~~L~R~~kp~~~~l~~~~~~~g~~lA~~~~~~~~------~~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~ 78 (290)
T PRK12870 5 LEPTWLAIIRLLRWDKPAGRLILMIPALWAVFLAAHGLPPLP------LVGIIILGALATSAAGCVVNDLWDRDIDPQVE 78 (290)
T ss_pred cchhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCCCCHH------HHHHHHHHHHHHHHHHHHHHhHHHhccCCCCC
Confidence 4568999999986555 566778999998754 333331 23334456667899999999999999998876
Q ss_pred --CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHHH
Q 017282 155 --PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGA 232 (374)
Q Consensus 155 --~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg~ 232 (374)
++||+++|++|++|+..++.++.++++.+++.+ ++.++.+++.+.++.+.|| ..||++.+++++.|+
T Consensus 79 Rt~~RPL~sG~is~~~a~~~~~~~~~~~~~l~~~l-------~~~~~~l~~~~~~~~~~Y~----~~KR~t~~~~~~lg~ 147 (290)
T PRK12870 79 RTRFRPLASRRLSVKVGIVIAIVALLCAAGLAFFL-------NPLSFWLCVAAVPVIFLYP----LAKRVFPVPQLVLAI 147 (290)
T ss_pred cccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHhh----hhhhccccceeeehH
Confidence 589999999999999999999999998888776 5667778888888889998 389998889999999
Q ss_pred HHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHH-HHHHHHHHH
Q 017282 233 SYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVG-AIDITQISV 311 (374)
Q Consensus 233 ~~g~lp~~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~-~~~l~~l~l 311 (374)
.++..+..++.+++|++++..+++++..++|+.+++++++++|+|+|+++|+||+|+++|++++.++... .+....++.
T Consensus 148 ~~~~~~l~g~~a~~g~~~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~~~~~~~~~l~~ 227 (290)
T PRK12870 148 AWGFAVLISWSAVTGHLDLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGLFFALTVGFLAI 227 (290)
T ss_pred HHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHHHHHHHHHHHHH
Confidence 9987766677788999999898899999999999999999999999999999999999999998887664 233444456
Q ss_pred HHHHhhhhHHHHH
Q 017282 312 AGYLLGAGKPYYA 324 (374)
Q Consensus 312 ~~~~~~~~~~~~~ 324 (374)
+++..+.+++||.
T Consensus 228 ~~~~~~~~~~y~~ 240 (290)
T PRK12870 228 LGVLLELHLPFWI 240 (290)
T ss_pred HHHHhCCcHHHHH
Confidence 7788888887774
No 20
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=2.8e-35 Score=286.22 Aligned_cols=229 Identities=22% Similarity=0.262 Sum_probs=186.9
Q ss_pred cchhHHHHHhhh---CccchHHHHHHHHHHHHhhCCC-----CCchhhHHHHHHHHHHHHHHHHHHHhhhhccccccccc
Q 017282 80 ETNKWKIRLQLT---KPVTWPPLIWGIVCGAAASGNF-----HWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDA 151 (374)
Q Consensus 80 ~~~~l~~~l~L~---RP~~~~~~~~~~~~G~~~~g~~-----~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~ 151 (374)
.++++++|+|++ ||++....++|+++|.+.+... .. ++.. ++..+++++++++++|++|||+|+|+|+
T Consensus 26 ~~~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~---~~~~-~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~ 101 (314)
T PRK12878 26 LPPWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLL---LLWH-LFLFFVGAIAMRGAGCTYNDIVDRDIDA 101 (314)
T ss_pred cchhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCC---CHHH-HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 457999999999 9999999999999998854221 11 2222 3344556778999999999999999999
Q ss_pred ccC--CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHH
Q 017282 152 INE--PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFA 229 (374)
Q Consensus 152 ~n~--~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~ 229 (374)
+|+ ++||+++|++|+++++.++.++.++++.+.+.+ ++.++.++++++++.+.|| .+||++.++++.
T Consensus 102 ~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~~~-------~~~~~~l~~~~~~~~~~Y~----~~KR~t~~~~~~ 170 (314)
T PRK12878 102 KVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQF-------NWFAIALGIASLAIVAAYP----FMKRITWWPQFF 170 (314)
T ss_pred CCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHH----HHHhcCCcchHH
Confidence 877 699999999999999998888888888777654 4667888888888899997 389998889998
Q ss_pred HHHHHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHHHH-
Q 017282 230 LGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQ- 308 (374)
Q Consensus 230 vg~~~g~lp~~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l~~- 308 (374)
.|+.+++.|++++++++|++++.++++++..++|+...+.+++++|+|+|+++|+||+|+++|++++++++........
T Consensus 171 ~Gl~~~~~~l~g~~a~~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~ 250 (314)
T PRK12878 171 LGLAFSWGALMGWAAHFGSLSLAAVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLVLFYGLAVLL 250 (314)
T ss_pred HHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHHHHHHHHHHH
Confidence 8988877777778888999999888888899999999999999999999999999999999999999887754333332
Q ss_pred HHHHHHHhhhhHHHH
Q 017282 309 ISVAGYLLGAGKPYY 323 (374)
Q Consensus 309 l~l~~~~~~~~~~~~ 323 (374)
+.+.++..+.++.|+
T Consensus 251 ~~l~~~~~~~~~~~~ 265 (314)
T PRK12878 251 MGLAFWLAGVPLLAL 265 (314)
T ss_pred HHHHHHHhcCcHHHH
Confidence 334444556655544
No 21
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=100.00 E-value=3.6e-35 Score=282.04 Aligned_cols=249 Identities=26% Similarity=0.255 Sum_probs=191.6
Q ss_pred hHHHHHhhhCccchHHHHHHHHHHHHhh--CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccC--CCCC
Q 017282 83 KWKIRLQLTKPVTWPPLIWGIVCGAAAS--GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRP 158 (374)
Q Consensus 83 ~l~~~l~L~RP~~~~~~~~~~~~G~~~~--g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n~--~~Rp 158 (374)
++|+|+|++||+........+..|+..+ +.+++. .++..++++.++++++|++|||+|+|+|++|+ |+||
T Consensus 1 ~~~~~~~L~r~~~~~~~~~~~~~g~~la~~~~~~~~------~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RP 74 (282)
T TIGR01475 1 KFKDILELIKFEHTVFALPFAYAGALLAAKGLPGLK------TLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRP 74 (282)
T ss_pred CHHHHHHHHccccHHHHHHHHHHHHHHhcCCCCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCC
Confidence 4789999999999999877777788754 334432 23345566778999999999999999999994 8999
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHHHHHhHHH
Q 017282 159 IPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLP 238 (374)
Q Consensus 159 l~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg~~~g~lp 238 (374)
+++|++|+++++.++.++.++++.++..+ ++....++.++.++.+.|+ .+||++.++|++.|+.++..+
T Consensus 75 l~sG~is~~~a~~~~~~~~~~~~~~~~~l-------~~~~~~l~~~~~~~~~~Y~----~~Kr~~~~~~~~~g~~~~~~~ 143 (282)
T TIGR01475 75 LVSGLISKKEARTMIILSLALFLSASYFL-------NPLAFILSPLVLLVLIIYP----YTKRFTFLCHYVLGSTYGLAP 143 (282)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHh----hHhccccccHHHHHHHHHHHH
Confidence 99999999999999887776666666655 4445667777777788998 489999999999999988777
Q ss_pred HHHHHHHhCCCC--HHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHHHHHH--HHHH
Q 017282 239 WWAGQALFGTLT--PDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQIS--VAGY 314 (374)
Q Consensus 239 ~~~~~a~~g~~~--~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l~~l~--l~~~ 314 (374)
+.++.++.|+.+ ...++++++.++|+.+++++||++|+|+|+++|+||+|+++|+|++++++.....++... +.++
T Consensus 144 ~~g~~a~~g~~~~~~~~~ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~ 223 (282)
T TIGR01475 144 LAGWVAVIGTISFFLVAWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVGF 223 (282)
T ss_pred HHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777778888888 778888899999999999999999999999999999999999999888766544443322 3344
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHH-hcCcchHH
Q 017282 315 LLGAGKPYYALALLALIVPQIVFQFQYF-LKDPIKYD 350 (374)
Q Consensus 315 ~~~~~~~~~~~~l~~l~lpl~~~~~~~~-~~~~~~~~ 350 (374)
..+.++.|+...+ +....++.+.+.. .+|++++.
T Consensus 224 ~~~~g~~y~~~~~--~~~~~l~~~~~~~~~~~~~~~~ 258 (282)
T TIGR01475 224 YVGNGYIALLALI--LIGLILAYEHYIVDPGDQSKIQ 258 (282)
T ss_pred HhhCcHHHHHHHH--HHHHHHHHHHHHcCCCCHHHHH
Confidence 4556776665433 2234555565543 34444443
No 22
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=7.8e-35 Score=280.38 Aligned_cols=243 Identities=20% Similarity=0.180 Sum_probs=186.3
Q ss_pred chhHHHHHhhhCccchHHHHHHHHHHHHhh-------CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 017282 81 TNKWKIRLQLTKPVTWPPLIWGIVCGAAAS-------GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAIN 153 (374)
Q Consensus 81 ~~~l~~~l~L~RP~~~~~~~~~~~~G~~~~-------g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n 153 (374)
++++|+|+|++||+.........++|+... +.+++. .++..++++.++++++|++|||+|+|+|++|
T Consensus 5 ~~~l~~y~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~~~~~~------~~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~ 78 (291)
T PRK12874 5 TKKLKDISELVVFKHSIFSLPFIFIAMIVASKQKNDTGWFGFK------LLILGILAAVSARNFAMAFNRLVDRDIDKDN 78 (291)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhhhccCCCCCHH------HHHHHHHHHHHHHHHHHHHHhhhhhccccCC
Confidence 457999999999999988887777776532 223331 2334455666788999999999999999999
Q ss_pred C--CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHH
Q 017282 154 E--PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALG 231 (374)
Q Consensus 154 ~--~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg 231 (374)
+ |+||+++|++|+++++.++..+.++++.+++.+ |+....+++..++....|| .+||++.++|++.|
T Consensus 79 ~RT~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~-------n~~~~~l~~~~~~~~~~Y~----~~KR~t~~~~~~~g 147 (291)
T PRK12874 79 PRTANRPSVDGRISVKSMVLFIVLNALIFIGVSYFI-------NPLAFKLSFPFLIVLGGYS----YFKRFSSLAHLVLG 147 (291)
T ss_pred CCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHh----hhcccccccHHHHH
Confidence 8 799999999999999999888887777666654 4556666666777788999 38999999999999
Q ss_pred HHHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHHHHHH-
Q 017282 232 ASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQIS- 310 (374)
Q Consensus 232 ~~~g~lp~~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l~~l~- 310 (374)
+.++..|+.++.+++|++++..+++++..++|+.+++++|+++|+|+|+++|+||+|+++|++++.++......+..+.
T Consensus 148 ~~~~~~~l~G~~av~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~~~~~ 227 (291)
T PRK12874 148 LSLGLAPIAGVVAVLGEIPLWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLAVLFW 227 (291)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHHHHHH
Confidence 9988877778878889999888888899999999999999999999999999999999999999887654433333322
Q ss_pred -HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 017282 311 -VAGYLLGAGKPYYALALLALIVPQIVFQFQYF 342 (374)
Q Consensus 311 -l~~~~~~~~~~~~~~~l~~l~lpl~~~~~~~~ 342 (374)
..++..+.++.++. ...+...+++.+.+..
T Consensus 228 ~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~ 258 (291)
T PRK12874 228 LLFVWCAHLGLFAYL--GVIVSALILLYEHYLV 258 (291)
T ss_pred HHHHHHhcchHHHHH--HHHHHHHHHHHHHHHh
Confidence 22333333333332 2234444556665544
No 23
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=100.00 E-value=8e-35 Score=281.35 Aligned_cols=267 Identities=24% Similarity=0.276 Sum_probs=199.3
Q ss_pred cccchhHHHHHhhhCccchHHHHHHHHHHHHhhC--CCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccC-
Q 017282 78 AQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASG--NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE- 154 (374)
Q Consensus 78 ~~~~~~l~~~l~L~RP~~~~~~~~~~~~G~~~~g--~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n~- 154 (374)
+..++++|+|+|++||+.+....+|+.+|++.+. .+++. .++..+++++++++++|++|||+|+|+|++|+
T Consensus 4 ~~~~~~~~~y~~L~rp~~~~~~~~~~~~G~~la~~~~~~~~------~~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~R 77 (296)
T PRK04375 4 SSSRATLKDYLALTKPRVISLNLFTALGGMLLAPPGVPPLL------LLLLTLLGIALVAGAAGALNNYIDRDIDAKMER 77 (296)
T ss_pred cchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCCCHH------HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCc
Confidence 3456789999999999999999999999998653 23331 23345566778899999999999999999987
Q ss_pred -CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH-hheecCCCCcccccccchhhHHHHH
Q 017282 155 -PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSL-LSYIYSAPPLKLKQNGWIGNFALGA 232 (374)
Q Consensus 155 -~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~-l~~~Ys~pP~~lK~~~~~g~l~vg~ 232 (374)
|+||+++|++|++|++.++.++.++++++++++. ++....+++++++ ..+.||. ++||+++ +|..+|.
T Consensus 78 t~~Rpl~sG~is~~~a~~~~~~l~~~g~~l~~~l~------~~~~~~l~~~~~~~~~~~Ys~---~lKr~~~-~~~~v~~ 147 (296)
T PRK04375 78 TKNRPLVTGRISPREALIFGLVLGVLGFLLLGLFV------NPLAAWLTLAGIFFYVVVYTL---WLKRRTP-QNIVIGG 147 (296)
T ss_pred cCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHhcc---chhcCCc-cchHHHH
Confidence 7999999999999999999999988888876542 3334455555543 4678984 6999997 6877777
Q ss_pred HHhHHHHH-HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHH-HHHHHH
Q 017282 233 SYISLPWW-AGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAI-DITQIS 310 (374)
Q Consensus 233 ~~g~lp~~-~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~-~l~~l~ 310 (374)
..+..|++ ++.+++|++++.++++++..++|+...+..++++|+|||+++|+||+|+++|+++++++..... ....++
T Consensus 148 ~~g~~~~l~g~~a~~g~~~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~ 227 (296)
T PRK04375 148 AAGAMPPLIGWAAVTGSLSWEALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVTKRQILLYTVLLVAVS 227 (296)
T ss_pred HHHHhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHHHHHHHHHHHHHHHHH
Confidence 77766655 5567789999989999999999999999999999999999999999999999999888655433 333334
Q ss_pred HHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHhHHHHH
Q 017282 311 VAGYLLG-AGKPYYALALLALIVPQIVFQFQYFLKDPIKYDVKYQASAQPFL 361 (374)
Q Consensus 311 l~~~~~~-~~~~~~~~~l~~l~lpl~~~~~~~~~~~~~~~~~~~~~~~~~~l 361 (374)
++++..+ .++.|+... ..+...+++.+.+...++.++..++.+..+..+.
T Consensus 228 ~~~~~~~~~~~~y~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~F~~s~~~~ 278 (296)
T PRK04375 228 LLPVLLGMAGLLYLVVA-LLLGAWFLYYAWRLYRKDDRKWARKLFRYSINYL 278 (296)
T ss_pred HHHHHHhccCHHHHHHH-HHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHH
Confidence 5566655 455555422 2234445555555443333445555665665543
No 24
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=100.00 E-value=1.1e-34 Score=278.06 Aligned_cols=262 Identities=23% Similarity=0.284 Sum_probs=196.8
Q ss_pred hHHHHHhhhCccchHHHHHHHHHHHHhhC--CCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccC--CCCC
Q 017282 83 KWKIRLQLTKPVTWPPLIWGIVCGAAASG--NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRP 158 (374)
Q Consensus 83 ~l~~~l~L~RP~~~~~~~~~~~~G~~~~g--~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n~--~~Rp 158 (374)
++|+|+|++||++.+...+|++.|+..++ .+++. .++..+++++++++++|++|||+|+|+|++|+ |+||
T Consensus 1 ~~~~~~~l~rp~~~~~~~~~~~~g~~la~~~~~~~~------~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RP 74 (279)
T PRK12869 1 KIKAYLKLLKPRVIWLLDLAAVAGYFLAAKHGVSWL------PLIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRP 74 (279)
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCHH------HHHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCC
Confidence 57899999999999999999999988653 23431 23445667778899999999999999999987 7999
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHH-HHHhhccchhHH-HHHHHHHHHhheecCCCCcccccccchhhHHHHHHHhH
Q 017282 159 IPSGAISENEVITQIWVLLLAGLGLAGL-LDVWAGHDFPTI-FWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYIS 236 (374)
Q Consensus 159 l~sG~is~~~a~~~~~~l~~l~l~l~~~-l~~~~g~~~~~~-~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg~~~g~ 236 (374)
+++|++|++++..++..+.++++.++++ + ++.. ..+++...+..+.||. ++||++++ |..+|...|.
T Consensus 75 l~sG~is~~~a~~~~~~~~~~~~~l~~~~l-------~~~~~~~~~~~~~~~~~~Yt~---~lKr~~~~-~~~v~~~~g~ 143 (279)
T PRK12869 75 TPVGLVNRKEALAVGSALSALGTALGFLLL-------GPLTALFIALGWFFYAVVYTI---WLKPRTWL-NIVIGGFAGN 143 (279)
T ss_pred cCCCCcCHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhCc---ccccCChH-HHHHHHHHHH
Confidence 9999999999999999999999888877 4 3433 2334445567889994 69999995 7777777777
Q ss_pred HHHHHH-HHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHHH-HHHHHHH
Q 017282 237 LPWWAG-QALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDIT-QISVAGY 314 (374)
Q Consensus 237 lp~~~~-~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l~-~l~l~~~ 314 (374)
.|++++ .+++|++++..++++++.++|+.+....++++|+|||+++|+||+|+++|+++++++......+. .++...+
T Consensus 144 ~~~l~g~~a~~g~~~~~~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~ 223 (279)
T PRK12869 144 AAALAGYASGTGSLDLEAVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSVRAISISNALMIPYILLLY 223 (279)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776654 67789999999999999999999998889999999999999999999999999887655433222 2233333
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHhHHHHHH
Q 017282 315 LLGAGKPYYALALLALIVPQIVFQFQYFLKDPIKYDVKYQASAQPFLI 362 (374)
Q Consensus 315 ~~~~~~~~~~~~l~~l~lpl~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 362 (374)
..+.++.|+.. .......+++.+.+...++.++..++.++.+..++.
T Consensus 224 ~~~~g~~y~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~s~~~l~ 270 (279)
T PRK12869 224 LYYIGLIGLIL-VAILSAALMATSIRALLNPTKEEAWKMFKASSPYLA 270 (279)
T ss_pred HhhccHHHHHH-HHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHH
Confidence 34456655543 333445566666664433334445566666666543
No 25
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=6.2e-35 Score=281.19 Aligned_cols=257 Identities=23% Similarity=0.170 Sum_probs=191.4
Q ss_pred chhHHHHHhhhCccchHHHHHHHHHHHHhh--CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccC--CC
Q 017282 81 TNKWKIRLQLTKPVTWPPLIWGIVCGAAAS--GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PY 156 (374)
Q Consensus 81 ~~~l~~~l~L~RP~~~~~~~~~~~~G~~~~--g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n~--~~ 156 (374)
-+++|+|+|++||+......+++..|+..+ +..++. .++..+++.+++++++|++|||+|+|+|++|+ ++
T Consensus 5 ~~~~~~y~~L~r~~~~~~~~~~~~~g~~lA~~~~~~~~------~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~ 78 (291)
T PRK12886 5 LTKLKVFLEMIKFSHTLFALPFAGIGAVLAALGLPGAS------QLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAG 78 (291)
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHHhccCCCCHH------HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCC
Confidence 367999999999999999988899998754 223321 23344556777899999999999999999998 79
Q ss_pred CCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHHHHHhH
Q 017282 157 RPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYIS 236 (374)
Q Consensus 157 Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg~~~g~ 236 (374)
||+++|++|++|++.+...+.++++.+...+ |+..+.+++++.+..+.|| .+||++.+++++.|++++.
T Consensus 79 RPL~sG~is~~~A~~~~~~~~~~~~~l~~~~-------~~~~~~l~~~~~~~~~~Y~----~~Kr~t~~~~~~~g~~~~~ 147 (291)
T PRK12886 79 RAIPAGLISKGSAILFIVLSSLLMLFAAWFL-------NPLCLYLSPPALFFLLLYS----YCKRFTALAHVVLGFCLAL 147 (291)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHh----hhhccccccHHHHHHHHHH
Confidence 9999999999999987655544444443333 5666777777777789999 3799999999999998877
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHHHH-HHHHHH-
Q 017282 237 LPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQ-ISVAGY- 314 (374)
Q Consensus 237 lp~~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l~~-l~l~~~- 314 (374)
.|+.++.+++|++++.+++++++.++|+.+.++.++++|+|+|+++|+||+|+++|+++++++......... +++..+
T Consensus 148 ~~l~g~~a~~g~~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~ 227 (291)
T PRK12886 148 APLGAWIAIRGTIELPAILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFALGI 227 (291)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 776677788899999999999999999999999999999999999999999999999999887654333322 233333
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHH-hcCcchHHHHHHHh
Q 017282 315 LLGAGKPYYALALLALIVPQIVFQFQYF-LKDPIKYDVKYQAS 356 (374)
Q Consensus 315 ~~~~~~~~~~~~l~~l~lpl~~~~~~~~-~~~~~~~~~~~~~~ 356 (374)
..+.++.|+...+ .....+++ +.+.. .+|+++..++++..
T Consensus 228 ~~~~~~~y~~~~~-~~~~~~l~-~~~~~~~~~~~~~~~~~F~~ 268 (291)
T PRK12886 228 SAGLGPWFLAGLA-VTGILLLY-EHWLLRGGDLTRLDAAFFNM 268 (291)
T ss_pred HhcCcHHHHHHHH-HHHHHHHH-HHHHhCCCChhHHHHHHHHH
Confidence 3445666554332 33333443 54444 34434445554544
No 26
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=100.00 E-value=1e-34 Score=278.21 Aligned_cols=242 Identities=25% Similarity=0.339 Sum_probs=185.2
Q ss_pred hHHHHHhhhCccchHHHHHHHHHHHHhh-CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCCCCccc
Q 017282 83 KWKIRLQLTKPVTWPPLIWGIVCGAAAS-GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPS 161 (374)
Q Consensus 83 ~l~~~l~L~RP~~~~~~~~~~~~G~~~~-g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n~~~Rpl~s 161 (374)
++|+|+|++||+++.....+.++|+..+ +..+.. ...+..++++.+.++++|++|||+|+|+|+.|+|+||+++
T Consensus 2 ~l~~~~~l~Rp~~~~~~~~~~~~G~~la~~~~~~~-----~~~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~s 76 (277)
T PRK12883 2 ELKAFIEITRPHNCILAGIVGILGSLVALGGIPPI-----KTLILIFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPR 76 (277)
T ss_pred CHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCcH-----HHHHHHHHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCC
Confidence 5789999999999999999999998754 333211 1123344456667889999999999999999999999999
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHHHHHhHHHHHH
Q 017282 162 GAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWA 241 (374)
Q Consensus 162 G~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg~~~g~lp~~~ 241 (374)
|++|+++++.++.++.++++.+++.+ ++..+.+++++.++++.||. ++|+++++||+.+|..+|..|+.+
T Consensus 77 G~is~~~a~~~~~~l~~~g~~l~~~~-------~~~~~~~~~~~~~~~~~Y~~---~~k~~~~lg~~~vg~~~g~~~~~g 146 (277)
T PRK12883 77 GAMSRKAALYYSLLLFAVGLALAYLI-------NIEAFLFALGAYVLMFLYAW---KLKPLPFIGNVVVALLTGATPIYG 146 (277)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhh---cccCCcchhhHHHHHHHHHHHHHH
Confidence 99999999999999988888777765 45567777788888999995 688988779999999999888766
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHHH-HHHHHHHHhhhhH
Q 017282 242 GQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDIT-QISVAGYLLGAGK 320 (374)
Q Consensus 242 ~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l~-~l~l~~~~~~~~~ 320 (374)
+.+ .+++++..++. ...+++..++++.||++|+|+|+++|+||+|+++|+++++++........ ..+.+++..+.+.
T Consensus 147 ~~a-~~~~~~~~~~~-~~~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~~~~~~~~~~l~~~~~~~~ 224 (277)
T PRK12883 147 AIA-VGRIGLAGYLA-ICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGAIFGVLTVIASFLPVKAGIGL 224 (277)
T ss_pred HHH-hccccHHHHHH-HHHHHHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHHHHHHHHHHHHHHHHHHHcccH
Confidence 544 47777765543 34677888899999999999999999999999999999988765433222 2234455555554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 017282 321 PYYALALLALIVPQIVFQFQYFL 343 (374)
Q Consensus 321 ~~~~~~l~~l~lpl~~~~~~~~~ 343 (374)
.|+. . ..+..++++.+.+...
T Consensus 225 ~y~~-~-~~~~~~~l~~~~~~~~ 245 (277)
T PRK12883 225 GYLP-I-IIVDAIILYAAYLVLR 245 (277)
T ss_pred HHHH-H-HHHHHHHHHHHHHHHh
Confidence 4443 2 3356677777766543
No 27
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=100.00 E-value=5.2e-35 Score=283.63 Aligned_cols=269 Identities=17% Similarity=0.189 Sum_probs=192.7
Q ss_pred chhHHHHHhhhCccchHHHHHHHHHHHHhh--CCCCCchhhHHHHHHHHHHHHHHHHHHHhh----hhcccccccccccC
Q 017282 81 TNKWKIRLQLTKPVTWPPLIWGIVCGAAAS--GNFHWNLEDVAKSIVCMIMSGPCLTGYTQT----INDWYDREIDAINE 154 (374)
Q Consensus 81 ~~~l~~~l~L~RP~~~~~~~~~~~~G~~~~--g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~----iNd~~D~~~D~~n~ 154 (374)
.+.+++|+|++||++...+.+++..+...+ ...... +. ..+..++...+.+.++|+ +|||+|+|+|++|+
T Consensus 10 ~~~l~~~~~l~Rp~t~igt~l~~~~~~l~a~~~~~~~~--~~--~~~~~~l~~~~~~~~~nv~i~~iNd~~D~~iD~ink 85 (308)
T PRK12887 10 TSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTI--AL--ANLGLLLGAWIACLCGNVYIVGLNQLTDIEIDRINK 85 (308)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccchh--hH--HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCC
Confidence 456799999999999999999998776532 111110 10 011112223334455555 99999999999999
Q ss_pred CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHHHHH
Q 017282 155 PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASY 234 (374)
Q Consensus 155 ~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg~~~ 234 (374)
|+||+++|++|+++++....++.++++.+++.+ ++..+.+++++.++++.||.||+|+||++++++++++...
T Consensus 86 p~rPiasG~ls~~~a~~~~~~~~~lal~la~~~-------~~~~~~~~~~~~~lg~~Ys~pP~rlKr~~~~~~~~i~~~~ 158 (308)
T PRK12887 86 PHLPLAAGEFSRRQGQRIVIITGILALILAALL-------GPWLLITVGISLLIGTAYSLPPIRLKRFPLLAALCIFTVR 158 (308)
T ss_pred CCCCcCCcccCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHcCCchhhcccchhHHHHHHHHH
Confidence 999999999999999999998888888888765 4557888889999999999999999999998888776666
Q ss_pred hHHHHHHHHH-------HhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHHH
Q 017282 235 ISLPWWAGQA-------LFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDIT 307 (374)
Q Consensus 235 g~lp~~~~~a-------~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l~ 307 (374)
|..+.++.+. ..+.+++..++++++.++|+.++++.||++|+|+|++.|+||+|+++|++++.+++..++.+.
T Consensus 159 g~i~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~~ 238 (308)
T PRK12887 159 GVIVNLGLFLHFQWLLGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTAC 238 (308)
T ss_pred HHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHHH
Confidence 6554443211 122566777888889999999999999999999999999999999999999999888877777
Q ss_pred HHHHHHH----HhhhhHHHHHHHHHHHHHHHHHHHHHHH-hcCcchHHHHHHHhHHHHH
Q 017282 308 QISVAGY----LLGAGKPYYALALLALIVPQIVFQFQYF-LKDPIKYDVKYQASAQPFL 361 (374)
Q Consensus 308 ~l~l~~~----~~~~~~~~~~~~l~~l~lpl~~~~~~~~-~~~~~~~~~~~~~~~~~~l 361 (374)
++..+.. ..+.++.++... .++..-++++|.+.. .+|+++-..+++.-=++++
T Consensus 239 y~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~y~~iw~l~~ 296 (308)
T PRK12887 239 YLGMIAVGLLSLPTVNPAFLIVS-HLILLALLWWRSQRVDLQDKQAIAQFYQFIWKLFF 296 (308)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHH
Confidence 6654322 222333333221 222333455555543 5666555554444444443
No 28
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=100.00 E-value=8.7e-35 Score=279.15 Aligned_cols=259 Identities=24% Similarity=0.280 Sum_probs=192.8
Q ss_pred HHHHhh---hCccchHHHHHHHHHHHHhhCCC-CCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccC--CCCC
Q 017282 85 KIRLQL---TKPVTWPPLIWGIVCGAAASGNF-HWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRP 158 (374)
Q Consensus 85 ~~~l~L---~RP~~~~~~~~~~~~G~~~~g~~-~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n~--~~Rp 158 (374)
++|+|+ .||+.+...++|+++|+..+... ..+ ++ ..++.++++..++++++|++|||+|+|+|++|+ |+||
T Consensus 2 ~~y~~l~R~~kp~~~~l~~~~~~~g~~la~~~~~~~--~~-~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RP 78 (281)
T TIGR01474 2 LPYAKLMRADKPIGTLLLLWPCLWSLLLAAQAGGIP--PL-YLLGLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRP 78 (281)
T ss_pred hHHHHHHccccHHHHHHHHHHHHHHHHHHhcccCCC--cH-HHHHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCC
Confidence 445555 58889999999999998754221 111 11 123334455567899999999999999999876 6999
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHHHHHhHHH
Q 017282 159 IPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLP 238 (374)
Q Consensus 159 l~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg~~~g~lp 238 (374)
+++|++|+++++.++.++.++++.+++.+ ++....++++++++.+.|| .+||++.+++++.|+.++..|
T Consensus 79 l~sG~is~~~a~~~~~~~~~~~~~l~~~l-------~~~~~~l~~~~~~~~~~Y~----~~Kr~~~~~~~~~g~~~~~~~ 147 (281)
T TIGR01474 79 LASGAVSVRQAILFLLVQLLVALGVLLQL-------NPLTILLGVASLALVATYP----FMKRITYWPQLVLGLAFGWGA 147 (281)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHhc----hhcccccccHHHHHHHHHHHH
Confidence 99999999999999999888888877664 5667888888888899998 389999999999999988877
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHH-HHHHHHHHHHhh
Q 017282 239 WWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAID-ITQISVAGYLLG 317 (374)
Q Consensus 239 ~~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~-l~~l~l~~~~~~ 317 (374)
++++.+++|++++..+++++..++|+.+.+++|+++|+|+|+++|+||+|+++|++++++....... +..+.+.++..+
T Consensus 148 ~~g~~a~~g~~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (281)
T TIGR01474 148 LMGWAAVTGDLSTAAWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLGGLYALMILLLALAGLIAG 227 (281)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 7787888999998888788889999999999999999999999999999999999987665444332 333344555566
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHhHHH
Q 017282 318 AGKPYYALALLALIVPQIVFQFQYFLKDPIKYDVKYQASAQP 359 (374)
Q Consensus 318 ~~~~~~~~~l~~l~lpl~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (374)
.++.|+.. +......+.+...+...+|++++. ++++.+..
T Consensus 228 ~~~~y~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~F~~~~~ 267 (281)
T TIGR01474 228 LGPVYYLG-LAAAALLLIRQIATLDIRDPENCL-KLFKANNY 267 (281)
T ss_pred CcHHHHHH-HHHHHHHHHHHHHHhCCCCHHHHH-HHHHHhhH
Confidence 77766643 323333344443333233444444 44444444
No 29
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.7e-34 Score=275.94 Aligned_cols=269 Identities=16% Similarity=0.192 Sum_probs=202.4
Q ss_pred HHHHHhhhCccchHHHHHHHHHHHHhhCC-CCCchhhHHHHHHHHHHHHHHHHHHH----hhhhcccccccccccCCCCC
Q 017282 84 WKIRLQLTKPVTWPPLIWGIVCGAAASGN-FHWNLEDVAKSIVCMIMSGPCLTGYT----QTINDWYDREIDAINEPYRP 158 (374)
Q Consensus 84 l~~~l~L~RP~~~~~~~~~~~~G~~~~g~-~~~~~~~~~~~ll~l~~ag~l~~~a~----~~iNd~~D~~~D~~n~~~Rp 158 (374)
+|.+++++||++|+...+|+.+|+..++. ++|. .+++. .++|... |.+|||+|+|.|+.|++++.
T Consensus 1 ~~~~~~~~rP~~wi~~a~pf~~g~~la~~~~~~~------~l~~~----l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g 70 (282)
T PRK13105 1 IRQLLLSSRPISWINTAYPFAAAYLLAGGEIDWL------FVVGT----VFFLIPYNLAMYGINDVFDYESDLRNPRKGG 70 (282)
T ss_pred ChhHHHhcccHHHhccHHHHHHHHHHHCCCCChH------HHHHH----HHHHHHHHHHHHhhhhhhhhhcCCCCcccCC
Confidence 36899999999999999999999987643 3331 11111 2334444 45599999999999985543
Q ss_pred ccccccCHHHHHHHHHHHHHHHHH-HHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHHHHHhHH
Q 017282 159 IPSGAISENEVITQIWVLLLAGLG-LAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISL 237 (374)
Q Consensus 159 l~sG~is~~~a~~~~~~l~~l~l~-l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg~~~g~l 237 (374)
. .|.++++|+....+.+..++.+ +++.+... .++.++.++.++++.++.||.||+|+||+++.+++..++.+...
T Consensus 71 ~-~g~i~~~~~~~~~~~~~~~~~~~~~l~l~~~---~~~~~~~l~~~ai~~~~~YS~~p~rlk~~gl~d~~t~~~~f~~~ 146 (282)
T PRK13105 71 V-EGAVLDRAMHRTTLWASVVTTVPFLVVLLAV---GSWASGLVLAVSVFAVVAYSAPGLRFKERPFLDSLTSSTHFVSP 146 (282)
T ss_pred C-CCccCHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHHHHHHH
Confidence 3 4889999997766666655555 44443321 15668889999999999999999999999997665554444333
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHHHHHHHHHHHhh
Q 017282 238 PWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAGYLLG 317 (374)
Q Consensus 238 p~~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l~~l~l~~~~~~ 317 (374)
...+.+...+.+++..++.+..+++|+.+++++||+||+|+||+.|+||+|+++|+|++.+++..++.+++++++ ..+
T Consensus 147 ~v~G~~~~~~~~~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~--~~~ 224 (282)
T PRK13105 147 ALYGLVLAGAPFTAALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLML--ALP 224 (282)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 333444446667777888888999999999999999999999999999999999999999999888777766554 222
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh---cCcchHHHHHHHhHHHHHHHHHHHHHHhh
Q 017282 318 AGKPYYALALLALIVPQIVFQFQYFL---KDPIKYDVKYQASAQPFLILGLLVTALAT 372 (374)
Q Consensus 318 ~~~~~~~~~l~~l~lpl~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~gll~~~~~~ 372 (374)
... +. +.++.+|......+... ++|++.+..++.+++..+++|++++++++
T Consensus 225 ~~~--~~--l~ll~~p~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~ 278 (282)
T PRK13105 225 WPG--WL--AAVLALPYVVNTARFWSVTDADCERANRGWRRFLWLNYVSGFLVTMLLI 278 (282)
T ss_pred hHH--HH--HHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 22 34466788777777544 67889999999999999999999998764
No 30
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.3e-34 Score=277.95 Aligned_cols=252 Identities=23% Similarity=0.220 Sum_probs=192.0
Q ss_pred hHHHHHhhhCccchHHHHHHHHHHHHh-----hCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccC--C
Q 017282 83 KWKIRLQLTKPVTWPPLIWGIVCGAAA-----SGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--P 155 (374)
Q Consensus 83 ~l~~~l~L~RP~~~~~~~~~~~~G~~~-----~g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n~--~ 155 (374)
++|+|+|+.||+....+..-...|+.. .+.+++. .++..+++.+++++++|++|||+|+|+|++|+ |
T Consensus 1 ~~~~~~~l~r~~~~~~a~~~~~~~~~~~~~~~~~~~~~~------~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~ 74 (284)
T PRK12888 1 RVRAFLRLVAIEHSVFALPFAYIAALTAMFASDGSVHWA------DLLLVTVAMVGARTFAMAANRIIDREIDARNPRTA 74 (284)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCC
Confidence 478999999999988755544444432 2444442 23344556778899999999999999999998 7
Q ss_pred CCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHHHHHh
Q 017282 156 YRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYI 235 (374)
Q Consensus 156 ~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg~~~g 235 (374)
+||+++|++|++|++.++..+..+++.+++.+ |+.++.++.++.+..+.|+ ..||+++++|++.|++++
T Consensus 75 ~RPL~sG~is~~~a~~~~~~~~~~~l~l~~~l-------~~~~~~l~~~~~~~~~~Y~----~~Kr~t~~~~~~lg~~~~ 143 (284)
T PRK12888 75 GRELVTGAVSVRTAWTGALVALAVFLGAAALL-------NPLCLALAPLAVAPLVVYP----YAKRFTNFPHAILGLAQA 143 (284)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHH----HhhcccchhhHHHHHHHH
Confidence 99999999999999998887776666666554 5556777777777778997 489999999999999988
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHHHHH--HHHH
Q 017282 236 SLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQI--SVAG 313 (374)
Q Consensus 236 ~lp~~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l~~l--~l~~ 313 (374)
..|+.++.+++|++++..++++++.++|+.+++++|+++|+|+|+++|+||+|+++|+|++.++......+..+ ...+
T Consensus 144 ~~~l~g~~a~~g~~~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~~ 223 (284)
T PRK12888 144 VGPVGAWIAVTGTWSWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWFG 223 (284)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHHH
Confidence 88887888889999999999999999999999999999999999999999999999999998866554333332 2344
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHH-hcCcchHHHHH
Q 017282 314 YLLGAGKPYYALALLALIVPQIVFQFQYF-LKDPIKYDVKY 353 (374)
Q Consensus 314 ~~~~~~~~~~~~~l~~l~lpl~~~~~~~~-~~~~~~~~~~~ 353 (374)
+..+.++.||...+ +....+++|.+.. .+|+++++..+
T Consensus 224 ~~~~~~~~y~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~f 262 (284)
T PRK12888 224 LAVGFGALWWIGLA--ITAGAFAYEHAIVSPTDLSRVNRAF 262 (284)
T ss_pred HHhCCcHHHHHHHH--HHHHHHHHHHHHcCccCHHHHHHHH
Confidence 55667777775432 3344445554433 45556665443
No 31
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.3e-34 Score=277.39 Aligned_cols=252 Identities=17% Similarity=0.096 Sum_probs=191.0
Q ss_pred hHHHHHhhhCccchHHHHHHHHHHHHhhC--CCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccC--CCCC
Q 017282 83 KWKIRLQLTKPVTWPPLIWGIVCGAAASG--NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRP 158 (374)
Q Consensus 83 ~l~~~l~L~RP~~~~~~~~~~~~G~~~~g--~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n~--~~Rp 158 (374)
++|+|+|++||+.....+..+..|+..+. ..++. .++..+++++++++++|++||++|+|+|++|+ |+||
T Consensus 2 ~~~~~~el~k~~~t~~al~~a~~g~~lA~~~~~~~~------~l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RP 75 (286)
T PRK12895 2 NFRDIVDYIKLEHTVFDLPFILAGYVIAAGHYIHPI------KILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWA 75 (286)
T ss_pred cHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCCCHH------HHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCC
Confidence 57899999999999999999999987542 23321 12334456677899999999999999999996 7999
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHHHHHhHHH
Q 017282 159 IPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLP 238 (374)
Q Consensus 159 l~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg~~~g~lp 238 (374)
+++|++|++|++.+...+.++++.+.+.+ |+.++.++.....+...|+ .+||+++++|+++|+.+|..|
T Consensus 76 LpsG~is~~~A~~~~~~~~~~~~~~~~~l-------n~l~~~l~~~~~~l~~~yp----~~KR~t~~~~~~lG~~~g~~~ 144 (286)
T PRK12895 76 LVSGRIKMREAIAFTIIFIAIFEICTFLL-------NRLVFILSPIVIFLFIIDP----FLKRYTAWRHIYMGSIIGLGV 144 (286)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHH----HHHhCccccHHHHHHHHHhHH
Confidence 99999999999999999988888777666 5667777777766667776 499999999999999999777
Q ss_pred HHHHHHHhCCCCH--HHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHHHH--HHHHHH
Q 017282 239 WWAGQALFGTLTP--DIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQ--ISVAGY 314 (374)
Q Consensus 239 ~~~~~a~~g~~~~--~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l~~--l~l~~~ 314 (374)
+.++.++.|++++ ..+++++..++|+.++++++++||+|+|++.|+||+|+++|++++.++......++. +.+.++
T Consensus 145 l~g~~Av~g~~~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g~ 224 (286)
T PRK12895 145 LAGYLAVIPAFPYNLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWISGI 224 (286)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 7777788888764 345678889999999999999999999999999999999999998876644433332 233444
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHH-HhcCcchHHHHHH
Q 017282 315 LLGAGKPYYALALLALIVPQIVFQFQY-FLKDPIKYDVKYQ 354 (374)
Q Consensus 315 ~~~~~~~~~~~~l~~l~lpl~~~~~~~-~~~~~~~~~~~~~ 354 (374)
..+ +++||...+ +..-++..|.+. ..+|+.+|+...+
T Consensus 225 ~~~-~~~y~~~~~--~~~~~l~~q~~~~~~~~~~~~~~~~F 262 (286)
T PRK12895 225 YIR-TLWYLAALI--IIYTLVIYQHLIIDPRNPINKRMSFF 262 (286)
T ss_pred HHh-hHHHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 443 555554322 222233333332 2466777755433
No 32
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=100.00 E-value=3.7e-34 Score=277.27 Aligned_cols=270 Identities=20% Similarity=0.149 Sum_probs=203.0
Q ss_pred ccchhHHHHHhhhCccchHHHHHHHHHHHHhh--CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccC--
Q 017282 79 QETNKWKIRLQLTKPVTWPPLIWGIVCGAAAS--GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE-- 154 (374)
Q Consensus 79 ~~~~~l~~~l~L~RP~~~~~~~~~~~~G~~~~--g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n~-- 154 (374)
..++++|+|++++||+.+....+++++|++.+ +.+++. .++..++++++.++++|++|||+|+|+|++|+
T Consensus 8 ~~~~~l~~~~~L~RP~~~~~~~~~~~~G~~la~~~~~~~~------~~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt 81 (306)
T PRK13362 8 LWEASLKDYIQVTKPGIIFGNVISVAGGFFLASKGHVDPV------LMLAAVIGLSLVVASGCALNNCIDRDIDAKMQRT 81 (306)
T ss_pred hHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCCCHH------HHHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCC
Confidence 34457899999999999999999999999764 333431 13334456677899999999999999999876
Q ss_pred CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH-hheecCCCCcccccccchhhHHHHHH
Q 017282 155 PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSL-LSYIYSAPPLKLKQNGWIGNFALGAS 233 (374)
Q Consensus 155 ~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~-l~~~Ys~pP~~lK~~~~~g~l~vg~~ 233 (374)
++||+++|++|+++++.++..+.++++.++..+. |+....++.++.+ ..+.||. ++||++++++++.|+.
T Consensus 82 ~~RPlpsG~is~~~A~~~~~~l~~~g~~ll~~~~------n~~~~~l~~~~~~~~~~~Yt~---~lKr~t~~~~~vgg~~ 152 (306)
T PRK13362 82 RNRVTVTGEISLGEALGFGLALGVAGFGLLAAFT------NPLAALFAAFGYVVYVGVYSL---YLKRNSVYGTLVGSLS 152 (306)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHhH---HHhccCcHhHHHHHHH
Confidence 6999999999999999999999888887665432 4444545545443 4679983 6999999887766655
Q ss_pred HhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHH-HHHHHHHHHHH
Q 017282 234 YISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICV-GAIDITQISVA 312 (374)
Q Consensus 234 ~g~lp~~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~-~~~~l~~l~l~ 312 (374)
.+..|+.++.++.|++++..++++..+++|+.......+++|+|||+++|+||+|+++|++++++... +......++++
T Consensus 153 ga~p~l~G~~a~~g~~~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~~~~~~~~~~~~s~l 232 (306)
T PRK13362 153 GAMPPVVGYCAVTGQFDAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLHIVLYILVFALVTAL 232 (306)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHHHHHHHHHHHHHHHHHHH
Confidence 54444556678889999999999999999999999999999999999999999999999998877443 34444455667
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhc--CcchHHHHHHHhHHHHHHH
Q 017282 313 GYLLGAGKPYYALALLALIVPQIVFQFQYFLK--DPIKYDVKYQASAQPFLIL 363 (374)
Q Consensus 313 ~~~~~~~~~~~~~~l~~l~lpl~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~ 363 (374)
++..|...++|......+.+.+++..++...+ ++++..++++..+..++..
T Consensus 233 ~~~~g~~g~~y~~~~~~~~~~~l~~a~~~~~~~~~~~~~a~~~f~~S~~yl~~ 285 (306)
T PRK13362 233 LPLAGYTGIGYLAVAAATSLWWLAMALKGYRHAVDDTVWARQLFGFSILTITA 285 (306)
T ss_pred HHHHccccHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHH
Confidence 77766544455544434445566666654432 3334577888888887664
No 33
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=2.3e-34 Score=277.68 Aligned_cols=253 Identities=19% Similarity=0.143 Sum_probs=188.0
Q ss_pred cchhHHHHHhhhCccchHHHHHHHHHHHHhh--CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccC--C
Q 017282 80 ETNKWKIRLQLTKPVTWPPLIWGIVCGAAAS--GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--P 155 (374)
Q Consensus 80 ~~~~l~~~l~L~RP~~~~~~~~~~~~G~~~~--g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n~--~ 155 (374)
.++++++|+|++||+.......++.+|+..+ +.+++. .++..+++.+++++++|++|||+|+|+|++|+ |
T Consensus 11 ~~~~l~~yl~L~R~~~~~~~l~~~~~g~~la~~~~~~~~------~l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT~ 84 (300)
T PRK13106 11 TRSKFYIILRFLRIEQTFFSLPMAYLGAFVAIKGIPPIS------TLILIFLALFFLRTAGMTNDNLADLEIDAKNPRTK 84 (300)
T ss_pred hHHHHHHHHHHHccccHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHHHHHHhhHHhccccCCCccC
Confidence 4568999999999999999988899998754 333331 23334556678899999999999999999996 7
Q ss_pred CCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHHHHHh
Q 017282 156 YRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYI 235 (374)
Q Consensus 156 ~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg~~~g 235 (374)
+||+++|++|++|++.+...+.+.++++++.+ |+....++.++.+..+.|| .+||+++++|+++|++++
T Consensus 85 ~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l-------n~~~~~l~~~~~~~~~~Y~----~~KR~t~~~~~~lg~~~~ 153 (300)
T PRK13106 85 NRPLVTGAIKISEAKALITAGLILFFASAYLV-------NRWALLLSPIVALIAMSYP----YMKRYTAFANYHLASIQG 153 (300)
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHh----HHhcCCcchHHHHHHHHH
Confidence 99999999999999988766655555555544 5556677777777778898 389999999999999999
Q ss_pred HHHHHHHHHHhCCC--------CHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHHH
Q 017282 236 SLPWWAGQALFGTL--------TPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDIT 307 (374)
Q Consensus 236 ~lp~~~~~a~~g~~--------~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l~ 307 (374)
..++.++.++.|.. +..++++.+..++|+.+++++|+++|+|+|++.|+||+|+++| ++++++...+....
T Consensus 154 ~~~~~G~~a~~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~~~ 232 (300)
T PRK13106 154 LAVFSGAVAVLGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWALTFAGLNQLFS 232 (300)
T ss_pred HHHHHHHHHHcCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhHHHHHHHHHHHH
Confidence 88877777777743 2344556667889999999999999999999999999999999 77877766544333
Q ss_pred HH--HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHH
Q 017282 308 QI--SVAGYLLGAGKPYYALALLALIVPQIVFQFQYFLKDPIKYDVKY 353 (374)
Q Consensus 308 ~l--~l~~~~~~~~~~~~~~~l~~l~lpl~~~~~~~~~~~~~~~~~~~ 353 (374)
.. ...++..++++.||..++ ....++..+.+...++ ++|+..+
T Consensus 233 v~l~~~~~~~~~lg~~y~~~~~--~~~~~l~~~~~~~~~~-~~~~~~F 277 (300)
T PRK13106 233 VVLDLLGDLYYGLGPIAIAATI--LHGLIMAYAYYLASKK-GDFGRAF 277 (300)
T ss_pred HHHHHHHHHHhCCcHHHHHHHH--HHHHHHHHHHHHhCCc-hHHHHHH
Confidence 32 234456677877765432 2222333344433344 5555554
No 34
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=100.00 E-value=3.9e-34 Score=275.04 Aligned_cols=259 Identities=25% Similarity=0.300 Sum_probs=199.6
Q ss_pred chhHHHHHhhh---CccchHHHHHHHHHHHHhh---CC-CCCchhhHHHHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 017282 81 TNKWKIRLQLT---KPVTWPPLIWGIVCGAAAS---GN-FHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAIN 153 (374)
Q Consensus 81 ~~~l~~~l~L~---RP~~~~~~~~~~~~G~~~~---g~-~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n 153 (374)
++++++|+|++ ||....+..+|+..|.... +. +++. .++..+++..++++++|++||++|+|+|++|
T Consensus 3 ~~~~~~y~~L~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~~~~------~l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~ 76 (289)
T PLN02809 3 PPSLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPPGSLPDLK------MLALFGCGALLLRGAGCTINDLLDRDIDKKV 76 (289)
T ss_pred chhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccCCCCcHH------HHHHHHHHHHHHHHHHHHHHhhHHhccccCC
Confidence 46899999987 6888899999999887643 22 2321 2334555667789999999999999999998
Q ss_pred C--CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHH
Q 017282 154 E--PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALG 231 (374)
Q Consensus 154 ~--~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg 231 (374)
+ |+||+++|++|++|++.+..++.++++.+++.+ |+..+.+++++.++.+.|| .+||++++++++.|
T Consensus 77 ~RT~~RPL~sG~is~~~A~~~~~~~~~~~~~~~~~l-------~~~~~~l~~~~~~~~~~Y~----~~KR~t~~~~~~lg 145 (289)
T PLN02809 77 ERTKLRPIASGALTPFQGVGFLGAQLLLGLGILLQL-------NNYSRILGASSLLLVFTYP----LMKRFTFWPQAFLG 145 (289)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHh----HHHhcCcchHHHHH
Confidence 6 699999999999999999988888888887765 4557788888888889998 39999999999999
Q ss_pred HHHhHHHHHHHHHHhCCCCHHHHH-HHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHH-HHHH
Q 017282 232 ASYISLPWWAGQALFGTLTPDIIV-LTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAID-ITQI 309 (374)
Q Consensus 232 ~~~g~lp~~~~~a~~g~~~~~~~l-l~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~-l~~l 309 (374)
+.++..|++++.++.|++++..++ +....++|+.+.+++++++|+|+|+++|+||+|+++|++.+.++...... ...+
T Consensus 146 ~~~~~~~l~g~~av~g~~~~~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~~~~~~~~~~l 225 (289)
T PLN02809 146 LTFNWGALLGWAAVKGSLDPAVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLTGFGAASIGGL 225 (289)
T ss_pred HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhhcHHHHHHHHHHHHHHHHHH
Confidence 998888888888888988876664 77778889999999999999999999999999999999977776653222 2233
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH-HhcCcchHHHHHHHhHH
Q 017282 310 SVAGYLLGAGKPYYALALLALIVPQIVFQFQY-FLKDPIKYDVKYQASAQ 358 (374)
Q Consensus 310 ~l~~~~~~~~~~~~~~~l~~l~lpl~~~~~~~-~~~~~~~~~~~~~~~~~ 358 (374)
...++..+.+++||...+ .... .+.++.+. ..+|+++|++.++....
T Consensus 226 ~~~g~~~~~~~~~~~~~~-~~~~-~l~~~~~~v~~~~~~~~~~~F~~n~~ 273 (289)
T PLN02809 226 ALSGYNAGLGWPYYAGLA-AAAG-HLAWQIQTVDLSSRADCNRKFVSNKW 273 (289)
T ss_pred HHHHHHhcCcHHHHHHHH-HHHH-HHHHHHHHcCCCCHHHHHHHHHhCCH
Confidence 345666778887775432 2222 33444443 36777778777554443
No 35
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=100.00 E-value=1.4e-33 Score=270.69 Aligned_cols=261 Identities=21% Similarity=0.198 Sum_probs=192.8
Q ss_pred HHHHhhhCccchHHHHHHHHHHHHhhCC---CCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccC--CCCCc
Q 017282 85 KIRLQLTKPVTWPPLIWGIVCGAAASGN---FHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRPI 159 (374)
Q Consensus 85 ~~~l~L~RP~~~~~~~~~~~~G~~~~g~---~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n~--~~Rpl 159 (374)
|+|+|++||+++....+|+.+|++.++. +++ . .++.++++++++++++|++|||+|+|.|++|+ |+||+
T Consensus 1 ~~~~~l~rp~~~~~~~~~~~~g~~la~~~~~~~~-----~-~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl 74 (280)
T TIGR01473 1 KDYLQLTKPRIISLLLITAFAGMWLAPGGALVNP-----P-LLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPL 74 (280)
T ss_pred CchHHHccHHHHHHHHHHHHHHHHHhCCCCCCCH-----H-HHHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCC
Confidence 4799999999999999999999986532 233 1 23445567778999999999999999999987 79999
Q ss_pred cccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHh-heecCCCCcccccccchhhHHHHHHHhHHH
Q 017282 160 PSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLL-SYIYSAPPLKLKQNGWIGNFALGASYISLP 238 (374)
Q Consensus 160 ~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l-~~~Ys~pP~~lK~~~~~g~l~vg~~~g~lp 238 (374)
++|++|++++..++..+.++++.+..+.. ++....++++++++ .+.||. ++||++++ +..+|...|.+|
T Consensus 75 ~sG~is~~~a~~~~~~~~~~g~~il~~~~------~~~~~~l~~~~~~~~~~~Yt~---~lKr~~~~-~~~v~~~~g~~~ 144 (280)
T TIGR01473 75 VTGRISPREALAFGLLLGVLGVAILAAFV------NPLAALLGLFGIFFYVIVYTI---WLKRRTPQ-NTVIGGFAGAVP 144 (280)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHhhcCh---hhccCCch-hHHHHHHHHHHH
Confidence 99999999999999999888887544321 45566777777755 889995 58999986 666666777777
Q ss_pred HHH-HHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHH-HHHHHHHHHHHHh
Q 017282 239 WWA-GQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGA-IDITQISVAGYLL 316 (374)
Q Consensus 239 ~~~-~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~-~~l~~l~l~~~~~ 316 (374)
+++ +.+++|++++..++++++.++|+........++|+|||+++|+||+|+++|+|++.++.... +.+..++.+++..
T Consensus 145 ~l~g~~a~~g~~~~~~~~l~~~~~~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~ 224 (280)
T TIGR01473 145 PLIGWAAVTGSISLGAWLLFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLAFL 224 (280)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655 46778999999988899999999988778889999999999999999999999888765543 2333334444433
Q ss_pred -hhhHHHHHHHHHHHHHHHHHHHHHHHhcC-cchHHHHHHHhHHHHHH
Q 017282 317 -GAGKPYYALALLALIVPQIVFQFQYFLKD-PIKYDVKYQASAQPFLI 362 (374)
Q Consensus 317 -~~~~~~~~~~l~~l~lpl~~~~~~~~~~~-~~~~~~~~~~~~~~~l~ 362 (374)
+.++.|+... ..+...+++.+.+...++ .++...+.++.+..++.
T Consensus 225 ~~~~~~y~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~s~~~~~ 271 (280)
T TIGR01473 225 GGTGWLYLIVA-TLLGALFLYLAFKFYRDPTDRKKARKLFKFSLIYLA 271 (280)
T ss_pred hcccHHHHHHH-HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 3466555332 233444555565544333 23345566666666544
No 36
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=3.2e-33 Score=268.15 Aligned_cols=234 Identities=20% Similarity=0.168 Sum_probs=186.3
Q ss_pred cchhHHHHHhh---hCccchHHHHHHHHHHHHhhCC--CCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccC
Q 017282 80 ETNKWKIRLQL---TKPVTWPPLIWGIVCGAAASGN--FHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE 154 (374)
Q Consensus 80 ~~~~l~~~l~L---~RP~~~~~~~~~~~~G~~~~g~--~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n~ 154 (374)
.++++++|+|+ .||....+.++|++.|...+.. .++ . .++..++++.++.+++|++||+.|+|+|++|+
T Consensus 3 ~~~~~~~y~~L~R~~Kp~~~~ll~~p~~~g~~la~~~~~~~-----~-~~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~ 76 (294)
T PRK12873 3 RSIKLSPWFELLRWNKPTGRLILLIPAGWSLWLTPSAPPSL-----L-LLLLIILGGLAVSGAGCIANDLWDRRIDRKVE 76 (294)
T ss_pred chHhHHHHHHHhCccccchHHHHHHHHHHHHHHccCCCCCH-----H-HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 45689999999 5677778899999999775422 232 1 23445566777899999999999999999987
Q ss_pred --CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHHH
Q 017282 155 --PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGA 232 (374)
Q Consensus 155 --~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg~ 232 (374)
++||+++|++|+++++.++.++.++++.+.+.+... .|+..+.+++++++....|| .+||++.+++++.|+
T Consensus 77 RT~~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~---~n~l~~~l~~~~~~~~~~Y~----~~KR~t~~~~~vlg~ 149 (294)
T PRK12873 77 RTKNRPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQP---SRNLCLSLAFLALPPILIYP----SAKRWFAYPQAILAL 149 (294)
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHHHHHHHHHHH----HHHhccccchHHHHH
Confidence 699999999999999999999988888877665311 15667788888888889999 489999999999999
Q ss_pred HHhHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHH-HHHHHHH
Q 017282 233 SYISLPWWAGQALFGTLTPD--IIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVG-AIDITQI 309 (374)
Q Consensus 233 ~~g~lp~~~~~a~~g~~~~~--~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~-~~~l~~l 309 (374)
..+..|+++|.+++|++++. .+++++..++|+.+.+++++++|+|+|+++|+||+|+++|++..+..... .+.+..+
T Consensus 150 ~~a~~~l~gw~Av~g~~~~~~~~l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~~~~~~~~~~~~~~~~ll 229 (294)
T PRK12873 150 CWGFAVLIPWAAAEGSLNGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGSNALKTVQICYFLTSIFL 229 (294)
T ss_pred HHHhHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcChhhHHHHHHHHHHHHHHH
Confidence 88877777888889998863 34455788999999999999999999999999999999998655543332 3334445
Q ss_pred HHHHHHhhhhHHHHHHH
Q 017282 310 SVAGYLLGAGKPYYALA 326 (374)
Q Consensus 310 ~l~~~~~~~~~~~~~~~ 326 (374)
..+++..++++.||...
T Consensus 230 ~~~g~~~~l~~~y~~~~ 246 (294)
T PRK12873 230 ALAAFIAQVGFIFWPFW 246 (294)
T ss_pred HHHHHHhCCcHHHHHHH
Confidence 66788888888877543
No 37
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=100.00 E-value=1.3e-32 Score=265.22 Aligned_cols=224 Identities=29% Similarity=0.357 Sum_probs=187.5
Q ss_pred hhHHHHHhhhCccchHHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccCC--CCCc
Q 017282 82 NKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEP--YRPI 159 (374)
Q Consensus 82 ~~l~~~l~L~RP~~~~~~~~~~~~G~~~~g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n~~--~Rpl 159 (374)
..++.++++.||..+.+..+|.++|..... .+++ . ....+..++++++.++++|++||++|+|+|++|+| +||+
T Consensus 11 ~~~~~l~r~~r~i~~l~~~~~~~~~~~~~~-~~~~--~-~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl 86 (289)
T COG0382 11 KALLKLLRLDRPIFNLLLLLPALLGLLLAA-SGLP--S-LKLLLLAFLAFFLARSAGYVINDLADREIDRINPRTKNRPL 86 (289)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-cCCc--h-HHHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCCccCCCC
Confidence 456777888899999999999999987543 1221 1 12344555666778999999999999999999997 9999
Q ss_pred cccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHHHHHhHHHH
Q 017282 160 PSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPW 239 (374)
Q Consensus 160 ~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg~~~g~lp~ 239 (374)
++|++|+++++.+..++.++++++++.+ |+..+.+++.+.++.+.| | ++||.++++++.+|..++..+.
T Consensus 87 ~sG~vS~~~a~~~~~~~~~~~~~~a~~l-------~~~~~~l~~~~~~l~~~Y---~-~~Kr~~~~~~~~lg~~~~~~~~ 155 (289)
T COG0382 87 PSGRVSVKEALLLAILLLLLGLALALLL-------NPLAFLLSLAALVLALAY---P-FLKRFTFLPQLVLGLAFGLGAL 155 (289)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHH---H-HhhcCCchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887 455678888888999999 3 5999999999999999998888
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHH-HHHHHHHHHHhhh
Q 017282 240 WAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAID-ITQISVAGYLLGA 318 (374)
Q Consensus 240 ~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~-l~~l~l~~~~~~~ 318 (374)
+++.+..|+..+..+++.+..++|+.+++++++++|+|+|++.|+||+|+.+|++++..+...... ...+..+++..+.
T Consensus 156 ~g~~a~~~~~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~ 235 (289)
T COG0382 156 AGAAAVGGSLPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLLLASALLVLLGLLAGL 235 (289)
T ss_pred HHHHHHhCccchHHHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 887788888888888898999999999999999999999999999999999999999998776553 2233456666666
Q ss_pred hH
Q 017282 319 GK 320 (374)
Q Consensus 319 ~~ 320 (374)
..
T Consensus 236 ~~ 237 (289)
T COG0382 236 LG 237 (289)
T ss_pred ch
Confidence 54
No 38
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=5e-32 Score=261.42 Aligned_cols=266 Identities=18% Similarity=0.183 Sum_probs=188.2
Q ss_pred hhHHHHHhhhCccchHHHHHHHHHHHHhh----CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhccccccccccc----
Q 017282 82 NKWKIRLQLTKPVTWPPLIWGIVCGAAAS----GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAIN---- 153 (374)
Q Consensus 82 ~~l~~~l~L~RP~~~~~~~~~~~~G~~~~----g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n---- 153 (374)
+++|+|++++||+++.....+++.|.+.+ |.+++. . ++.+++.+.++..++|++|||+|+|.|+.|
T Consensus 3 ~~~~~~~~l~Rp~~l~~~~~~~~~g~~lA~~~~g~~~~~-----~-~~l~~l~~~l~~~ag~~iND~~D~~~D~~~v~rt 76 (297)
T PRK12871 3 ETLKAYIDLTRAHFLPAWPLLFCSGLVLAFANYGGFSWE-----L-TIKAALIGLFGFEAGFVLNDYVDRKRDRLDVENT 76 (297)
T ss_pred chHHHHHHHHhHHHHHHHHHHHHHHHHHHHHccCCCCHH-----H-HHHHHHHHHHHHHHHHHHhhHHHHhcCcchHhhh
Confidence 46999999999998888888887887542 445542 1 222233455556678999999999999864
Q ss_pred -----C--CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchh
Q 017282 154 -----E--PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIG 226 (374)
Q Consensus 154 -----~--~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g 226 (374)
+ ++||+++|++|+++++.++.++.++++.++..+.... .+..+.+++.+.++++.|+..|.. .+.+. +
T Consensus 77 m~r~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~---~~~~~~l~~~~~~~~~~Y~~~kr~-~~~p~-~ 151 (297)
T PRK12871 77 LTRYWRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPN---SLYVFVIMLYSYGIEAFYQVKKRN-QKYPV-A 151 (297)
T ss_pred hhccccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhccccc-ccccH-H
Confidence 2 5899999999999999999999999988887765432 234567778888889999842211 11232 2
Q ss_pred hHHHHHHHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHH
Q 017282 227 NFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDI 306 (374)
Q Consensus 227 ~l~vg~~~g~lp~~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l 306 (374)
++.-++.++. +.+.+++++|+++...+++++..++|+.+++.+||++|+|||+++|+||+|+++|+++++++......+
T Consensus 152 ~l~G~~~~~~-~~~~g~~~~g~~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~i~~~~~l 230 (297)
T PRK12871 152 QLLGRTDFTL-FPAAGYLCYGQPDMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYWVTGFTAL 230 (297)
T ss_pred HHHHHHHHHH-HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHHHHHHHHHH
Confidence 3333344555 444456678999988888888999999999999999999999999999999999999888755544444
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh-cCcchHHHHHHHhHHHHH
Q 017282 307 TQISVAGYLLGAGKPYYALALLALIVPQIVFQFQYFL-KDPIKYDVKYQASAQPFL 361 (374)
Q Consensus 307 ~~l~l~~~~~~~~~~~~~~~l~~l~lpl~~~~~~~~~-~~~~~~~~~~~~~~~~~l 361 (374)
..+..+++..+.++.++.. ..+...++.+.|.+... +|++.|. +.+.+.+.|.
T Consensus 231 ~~l~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~f~~~~~~~ 284 (297)
T PRK12871 231 HFLAAIFFLRELGPIALYG-FLAGFVLLAGANLYLWKEKSQDAGM-KILPLYHASL 284 (297)
T ss_pred HHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHH
Confidence 4444555566676553332 22356677777877654 4444444 4444554443
No 39
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=3e-32 Score=261.50 Aligned_cols=229 Identities=23% Similarity=0.197 Sum_probs=176.1
Q ss_pred hhHHHHHhhhCccchHHHHHHHHHHHHhh-------CC-CCCchhhHHHHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 017282 82 NKWKIRLQLTKPVTWPPLIWGIVCGAAAS-------GN-FHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAIN 153 (374)
Q Consensus 82 ~~l~~~l~L~RP~~~~~~~~~~~~G~~~~-------g~-~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n 153 (374)
+++|.|.|+.|-...+.++--...|+..+ +. ++++ ++ ..++.+.++.+++++++|++|||+|+|+|++|
T Consensus 2 ~~~~~~~~~i~~~ht~Falpfa~~~~~~a~~~~~~~~~~~~~~--~~-~~~~~~~~a~~~~Rsag~~~Nd~~DrdiD~~~ 78 (300)
T PRK12876 2 MRIKYFQQLINCKYALFSALFLSASTVFALSLPEISFSLFSLG--GI-KTISLGGSAFFCARTVGIIVNQIIDCAIDKKN 78 (300)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcCCC--CH-HHHHHHHHHHHHHHHHHHHHHhHHHhcccCCC
Confidence 46899999999877665544444555422 22 2232 11 12334555667789999999999999999999
Q ss_pred C--CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHH
Q 017282 154 E--PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALG 231 (374)
Q Consensus 154 ~--~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg 231 (374)
+ ++||+++|++|++|++.+...+.++++++.+.+ |+.++.++.+++++.+.|| .+||++++++++.|
T Consensus 79 ~RT~~RPLpsG~is~~~A~~~~~~~~~~~~~l~~~l-------n~l~~~l~~~~~~~~~iY~----~~KR~t~~~~~vLG 147 (300)
T PRK12876 79 PRTSSRVLPAKLLSINFSMLLLTLCSFLFLSLCWLL-------NPLCFSLAVLSTLLMIIYP----YTKRVTFLCHWILG 147 (300)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHH----hHhcCCchhHHHHH
Confidence 9 799999999999999998876666666666655 6778888888888889998 49999999999999
Q ss_pred HHHhHHHHHHHHHHhCC-CCH----HHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHH
Q 017282 232 ASYISLPWWAGQALFGT-LTP----DIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDI 306 (374)
Q Consensus 232 ~~~g~lp~~~~~a~~g~-~~~----~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l 306 (374)
++++..|.+++.++.|+ .++ ..+++++..++|..+++++++++|+|+|++.|+||+|+++|++++..+......+
T Consensus 148 l~~~~~~l~~~~Av~~~~~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l 227 (300)
T PRK12876 148 LVYYLAILMNFFAIIETPLSFSLFCMASLWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASANLIA 227 (300)
T ss_pred HHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHHHHHHHHHH
Confidence 99998888787777776 555 3445667778888899999999999999999999999999999887665544333
Q ss_pred H--HHHHHHHHhhhhHHHHH
Q 017282 307 T--QISVAGYLLGAGKPYYA 324 (374)
Q Consensus 307 ~--~l~l~~~~~~~~~~~~~ 324 (374)
. .+.+.++..+.++++|.
T Consensus 228 ~~~~l~~~g~~~~l~~~~y~ 247 (300)
T PRK12876 228 SAIAYLLIGYFVSNKKIFYL 247 (300)
T ss_pred HHHHHHHHHHHhhccHHHHH
Confidence 3 33456677778877564
No 40
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-33 Score=262.70 Aligned_cols=267 Identities=23% Similarity=0.230 Sum_probs=219.0
Q ss_pred cchhHHHHHhhhCccchHHHHHHHHHHHHhhC--CCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccC--C
Q 017282 80 ETNKWKIRLQLTKPVTWPPLIWGIVCGAAASG--NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--P 155 (374)
Q Consensus 80 ~~~~l~~~l~L~RP~~~~~~~~~~~~G~~~~g--~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n~--~ 155 (374)
.++++|+|++++||+.+.+.+++.+.|+..+. ..++ ..++...+++.+..+++|++|+|+|+|+|++++ +
T Consensus 14 ~~~~~k~yl~LtKPrvi~L~~it~~~g~~lA~~~~~~~------~l~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~ 87 (304)
T COG0109 14 SRSTIKDYLQLTKPRVISLLLITAFAGMLLAPRGSINP------LLLLLTLLGGALGAGGAGAFNMYIDRDIDALMERTR 87 (304)
T ss_pred hHHHHHHHHHHhCCeeeehHHHHHHHHHHHcccccccH------HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhcc
Confidence 66899999999999999999999999998654 3333 134555667778888999999999999999998 6
Q ss_pred CCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHh-heecCCCCcccccccchhhHHHHHHH
Q 017282 156 YRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLL-SYIYSAPPLKLKQNGWIGNFALGASY 234 (374)
Q Consensus 156 ~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l-~~~Ys~pP~~lK~~~~~g~l~vg~~~ 234 (374)
+||+++|+++|++++.++.++.++|+.+.+++. |+....+++++++. .++||. ++||++.. |+++|..-
T Consensus 88 ~RP~~~G~i~p~~al~fgl~L~~~g~~~l~~~v------n~laa~l~~~gi~~Yv~vYT~---~lKR~T~~-NiviGg~a 157 (304)
T COG0109 88 KRPLVTGLISPREALAFGLVLGVAGFSLLWFLV------NLLAAVLGLFGIFFYVVVYTL---WLKRRTPQ-NIVIGGFA 157 (304)
T ss_pred CCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhhhhhh---hccCCccc-ceeeeecc
Confidence 999999999999999999999999998886543 66666777776654 889996 89999995 99999999
Q ss_pred hHHHHH-HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHH-HHHHHHHHHHHHHH
Q 017282 235 ISLPWW-AGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKW-ICVGAIDITQISVA 312 (374)
Q Consensus 235 g~lp~~-~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~-l~~~~~~l~~l~l~ 312 (374)
|.+|.+ ||.+++|++++++++++.++|+|+-..-..=.++-+||.+++|++++|++.|++.+++ +..+.+.+..+++.
T Consensus 158 Ga~PpliGwaAvtg~~~~~a~~Lf~IiF~WtPpHfwALAl~~~~DY~~AgiPMlPvv~G~~~t~~~I~~y~~~l~~~sl~ 237 (304)
T COG0109 158 GAMPPLIGWAAVTGSISLGAILLFAIIFLWTPPHFWALALKYKDDYKAAGIPMLPVVKGERRTKRQILLYTLALAPVSLL 237 (304)
T ss_pred ccccccceeeeeeCCCCchHHHHHHHHHHhccHHHHHHHHHHHHHHHHcCCCcccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 998866 5578899999999999999999875444444455667777999999999999998766 55566666666666
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHhHHHHHH
Q 017282 313 GYLLGAGKPYYALALLALIVPQIVFQFQYFLKDPIKYDVKYQASAQPFLI 362 (374)
Q Consensus 313 ~~~~~~~~~~~~~~l~~l~lpl~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 362 (374)
.+..|...+.|..+...+...++++.+|.+.++.++...+++..+.+++.
T Consensus 238 ~~~~g~~g~~Y~v~a~~l~~~~l~~a~~~~~~~~~~~A~klF~~S~~yL~ 287 (304)
T COG0109 238 LALLGYVGYLYLVVATLLGAWFLALAWKLYRKDDRKWARKLFKYSIIYLA 287 (304)
T ss_pred HHHhccchhHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 65677776677777777788888988888877888899999999999865
No 41
>PRK13595 ubiA prenyltransferase; Provisional
Probab=100.00 E-value=4.9e-32 Score=258.39 Aligned_cols=219 Identities=19% Similarity=0.213 Sum_probs=170.1
Q ss_pred ccchhHHHHHhhhCccchHHHHHHHHHHHHhhC-CCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCCC
Q 017282 79 QETNKWKIRLQLTKPVTWPPLIWGIVCGAAASG-NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYR 157 (374)
Q Consensus 79 ~~~~~l~~~l~L~RP~~~~~~~~~~~~G~~~~g-~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n~~~R 157 (374)
.....++.+++++||.+|+...+|+.+|+..+| .++|.+. ...++++.+ ...+...|.+|||+|+|+|++|+|+|
T Consensus 7 ~~~~~l~~ll~~sRP~~wi~t~~~~~~G~~~~g~~~~~~~~---~~~l~~~~~-~p~n~~~~giND~fD~eiDa~Npr~~ 82 (292)
T PRK13595 7 GILLPLRRLLLISRPALWVNTVGTLVTGVWLTGHLYTLDPG---VLPLLLYLT-LPFNLLIYGLNDLADRETDAASPRKG 82 (292)
T ss_pred hhhhHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCcccchhH---HHHHHHHHH-HHHHHHHHHHHhhhhhhhhccCCCCC
Confidence 445678889999999999999999999998765 3565211 122333333 34677999999999999999999999
Q ss_pred CccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHHHHHhHH
Q 017282 158 PIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISL 237 (374)
Q Consensus 158 pl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg~~~g~l 237 (374)
|+++|++|+++++.+...+.+.++.++..+.... ++..+.+.+++.++++.||.||+|+|++++++++.. ..+| +
T Consensus 83 ~i~~G~is~~~~~~~~~~~~~~~~~~~l~la~~l---~~~~~~l~~v~~~l~~~YS~pPlRlK~rp~l~~l~~-~~~g-~ 157 (292)
T PRK13595 83 GWQGARLSPGEVRPLLRAVLLLNAPFLLYLALLL---PPAATLLLLLYAALFVGYSLPPLRFKARPFLDGLSN-AAYA-L 157 (292)
T ss_pred CCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHccCccchhcCcchhHHHH-HHHH-H
Confidence 9999999999999877766666555454444332 466777888888999999999999999999988876 3444 3
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHHHH
Q 017282 238 PWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQ 308 (374)
Q Consensus 238 p~~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l~~ 308 (374)
|+..+.++.|+......+ +..++|..+++++++++|+|+||+.|+||+|+++|+|++.+++....+++.
T Consensus 158 p~~~~~~~~g~~~~~~~l--~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~ 226 (292)
T PRK13595 158 PLALPALALGAPVPWPPL--LALMAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALAWFLLAG 226 (292)
T ss_pred HHHHHHHHcCCcchHHHH--HHHHHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHH
Confidence 666666667765433332 455678899999999999999999999999999999999998876554443
No 42
>PLN02776 prenyltransferase
Probab=99.97 E-value=1.4e-29 Score=246.49 Aligned_cols=256 Identities=19% Similarity=0.151 Sum_probs=196.4
Q ss_pred hhCccchHHHHHHHHHHHHhhC--CCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccC--CCCCccccccC
Q 017282 90 LTKPVTWPPLIWGIVCGAAASG--NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRPIPSGAIS 165 (374)
Q Consensus 90 L~RP~~~~~~~~~~~~G~~~~g--~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n~--~~Rpl~sG~is 165 (374)
++||+.....+++...|+..+. ..++. .++..++++.+..+++|++||++|+|+|++|+ ++||+++|++|
T Consensus 1 L~Kpri~~lv~~ta~~G~~lA~~~~~~~~------~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris 74 (341)
T PLN02776 1 LSKARLSALVVATSGAGFVLGSGEAIDLP------GLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRIS 74 (341)
T ss_pred CCcchhHHHHHHHHHHHHHHhcCCCCCHH------HHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCC
Confidence 5799999999999999998642 23432 23344556777899999999999999999987 79999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHh-heecCCCCcccccccchhhHHHHHHHhHHH-HHHHH
Q 017282 166 ENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLL-SYIYSAPPLKLKQNGWIGNFALGASYISLP-WWAGQ 243 (374)
Q Consensus 166 ~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l-~~~Ys~pP~~lK~~~~~g~l~vg~~~g~lp-~~~~~ 243 (374)
+++++.++..+.++++.+..+.. |+....++++++++ .+.|| .+||++++ |.++|...|.+| +++|.
T Consensus 75 ~~~A~~~~~~l~~~g~~~l~~~~------n~l~~~l~~~~~~ly~~vYt----~lKR~t~~-~~~lG~~~Ga~ppL~Gw~ 143 (341)
T PLN02776 75 VPHAVAWAVVVGAAGVALLAYKT------NMLTAGLGAGNILLYAFVYT----PLKQIHPA-NTWVGAVVGAIPPLMGWA 143 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHH----hHccCCch-hHHHHHHHHHHHHHHHHH
Confidence 99999999998888875543321 56677777776654 67999 49999986 789999999655 45667
Q ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceec--ChhhHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 017282 244 ALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAF--GPETAKWICVGAIDITQISVAGYLLGAGKP 321 (374)
Q Consensus 244 a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~--G~~~a~~l~~~~~~l~~l~l~~~~~~~~~~ 321 (374)
+++|++++.++++++..++|+........++|+|||+++|++++|+.. |+++++.+..+.+.+..++++++..+....
T Consensus 144 Avtg~~~~~~~~Lf~~~~~Wq~pHf~~la~~~~dDy~~ag~pmlpv~~~~g~~ta~~i~~~~~~l~~~~ll~~~~g~~~~ 223 (341)
T PLN02776 144 AASGQLDAGAMVLAAALYFWQMPHFMALAYMCRDDYAAGGYRMLSLADATGRRTALVALRNCLYLAPLGFLAYDWGVTSS 223 (341)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCCcccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 889999999999999999999988888888999999999999999976 567777787777777666666666555433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHhHHHHHH
Q 017282 322 YYALALLALIVPQIVFQFQYFLKDPIKYDVKYQASAQPFLI 362 (374)
Q Consensus 322 ~~~~~l~~l~lpl~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 362 (374)
.|......+.+.+++...+...++..+...+++.++..|+.
T Consensus 224 ~~~~~a~~l~~~~l~~~~~~~~~~~~~~ar~~F~~Sl~yL~ 264 (341)
T PLN02776 224 PFALEAALLTAYLAASAASFYREPTNANARKMFHGSLLYLP 264 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 34333444555566666554444444567788888888765
No 43
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=99.97 E-value=1.2e-29 Score=243.78 Aligned_cols=275 Identities=20% Similarity=0.171 Sum_probs=194.7
Q ss_pred hhHHHHHhhhCccchHHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCCCCccc
Q 017282 82 NKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPS 161 (374)
Q Consensus 82 ~~l~~~l~L~RP~~~~~~~~~~~~G~~~~g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n~~~Rpl~s 161 (374)
+-++.++++.|+.....+......+.......++.+ ....+++.++.+.++|++|||+|+|+|++|+|+||.+
T Consensus 2 ~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~- 74 (285)
T PRK12872 2 KLLFAFLKLFRYGNLLIAALGQSLVYMASLLLGLPI------SWLLLLITFLIAAAVYIINYLTDLEEDIINKPERVVF- 74 (285)
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcChh------HHHHHHHHHHHHHHHHHhhhhcCCchhhcCCCchHHH-
Confidence 457899999999999988887777654321223321 1123334567889999999999999999999999988
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCc-ccccccchhhHHHHHHHhHHHHH
Q 017282 162 GAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPL-KLKQNGWIGNFALGASYISLPWW 240 (374)
Q Consensus 162 G~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~-~lK~~~~~g~l~vg~~~g~lp~~ 240 (374)
|++++......+..+++.++.++.... .++..+.+++++.++++.||.||. ++||.+..||+.+|..+|..|.+
T Consensus 75 ---s~~~~~~~~~~l~~i~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~Ys~~~~~~lk~~p~~~~~~vg~~~g~~~~~ 149 (285)
T PRK12872 75 ---SETKAYGLFLLLNVLGLYLGAYLLAVI--GGPKFALIFIIPLILGILYSVFFKRRLKRIPLFKNLVVSLLWALSPLI 149 (285)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhChhHHHHhhhhhHhhHHHHHHHHHHHHH
Confidence 456666666666666666666653221 156677888888888999999876 48999988999999999988877
Q ss_pred HH-HHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHHHHHH-HHHHHhhh
Q 017282 241 AG-QALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQIS-VAGYLLGA 318 (374)
Q Consensus 241 ~~-~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l~~l~-l~~~~~~~ 318 (374)
.+ +...+.+++..++.++..+++.+..+..||++|+|+|+++|+||+|+++|+|++++++.....+.+.. +.++..+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~~~~~~ 229 (285)
T PRK12872 150 LGVYYYQLTIFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILGVYTGL 229 (285)
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 55 34444567777777888888899999999999999999999999999999999999888766666554 44455555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCcch-HHHHHHHhHHHHHHHHHHHHHH
Q 017282 319 GKPYYALALLALIVPQIVFQFQYFLKDPIK-YDVKYQASAQPFLILGLLVTAL 370 (374)
Q Consensus 319 ~~~~~~~~l~~l~lpl~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~gll~~~~ 370 (374)
.+.++.. +. +..|..+...+.+.+++++ .-.+....-+.+++.|++...+
T Consensus 230 ~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 280 (285)
T PRK12872 230 LPLLLLV-LL-LLLAYVLYYIIKLFAADDKKDLLYLSLLDKEHMLLGLISMLL 280 (285)
T ss_pred hhHHHHH-HH-HHHHHHHHHHHHHHhcccccchhHHHHHhHHHHHHHHHHHHH
Confidence 4444432 22 2333333333444333333 3334444556677777766544
No 44
>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]
Probab=99.97 E-value=1e-30 Score=240.74 Aligned_cols=267 Identities=25% Similarity=0.311 Sum_probs=214.7
Q ss_pred ccchhHHHHHhhh---CccchHHHHHHHHHHHHhh-CCCCCchhhHHHHHHHHHHHHHH-HHHHHhhhhccccccccccc
Q 017282 79 QETNKWKIRLQLT---KPVTWPPLIWGIVCGAAAS-GNFHWNLEDVAKSIVCMIMSGPC-LTGYTQTINDWYDREIDAIN 153 (374)
Q Consensus 79 ~~~~~l~~~l~L~---RP~~~~~~~~~~~~G~~~~-g~~~~~~~~~~~~ll~l~~ag~l-~~~a~~~iNd~~D~~~D~~n 153 (374)
..+.+|++|.|++ ||...++..+|+.+..+.+ +.-.++ + ..++.+|-.|.+ +++++|++||+.|+|.|+++
T Consensus 59 ~~p~r~~pYaqLmRldkPiGTwLLywPCtWSIamaAdag~~p--~--~~mL~LFG~GAllMRgAGCtINDlwDkdlD~KV 134 (353)
T KOG1381|consen 59 SSPKRWKPYAQLMRLDKPIGTWLLYWPCTWSIAMAADAGLLP--S--IKMLALFGVGALLMRGAGCTINDLWDKDLDAKV 134 (353)
T ss_pred cCCccchhHHHHHhcCCCceeeeeecchHHHHHhccCCCccc--h--hHHHHHhcccHHHhccCCceehhhhhhhhhhhH
Confidence 4456799999998 6899999999999877643 221221 1 135566655555 78899999999999999988
Q ss_pred C--CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHH
Q 017282 154 E--PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALG 231 (374)
Q Consensus 154 ~--~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg 231 (374)
+ +.||+++|++|++|++.+....+.+++.+.+.+ |+..+.+|..++...+.|+. +||.++++++++|
T Consensus 135 eRtklRPlAsG~ls~~qaI~fL~~ql~~gLgiLlqL-------n~ysi~lg~~sl~~v~~ypl----~kr~TY~pq~vLg 203 (353)
T KOG1381|consen 135 ERTKLRPLASGSLSPRQAIGFLGAQLSLGLGILLQL-------NWYSIALGASSLALVITYPL----MKRFTYWPQLVLG 203 (353)
T ss_pred hhhcccccccCCcchhHHHHHHHHHHHHhHHHHHhc-------cHHHHHhcccccccEEEeeh----hhhcchhHHHHHh
Confidence 7 799999999999999998888777777776655 67788999999999999994 9999999999999
Q ss_pred HHHhHHHHHHHHHHhCCCCHHH-HHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHH-HHHHHHH
Q 017282 232 ASYISLPWWAGQALFGTLTPDI-IVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVG-AIDITQI 309 (374)
Q Consensus 232 ~~~g~lp~~~~~a~~g~~~~~~-~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~-~~~l~~l 309 (374)
.+|+...+++|.+..|+.++.. +-+.+...+|++.++.++.+||.++|.++|+|+.+.++|+++..++..+ ...++.+
T Consensus 204 ltfnwGAllGw~A~~g~~~~s~~~plYls~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~wl~gf~a~~ia~L 283 (353)
T KOG1381|consen 204 LTFNWGALLGWCALKGSLSPSAVLPLYLSGVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWLSGFGAAQIASL 283 (353)
T ss_pred hhcchhhhhcchhhcCccChhhhhHHHHhhhhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCchHHhhhhHHHHHHH
Confidence 9999988888888888887743 3455666789999999999999999999999999999999999998776 4456667
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-HHHhcCcchHHHHHHHhHHHHHH
Q 017282 310 SVAGYLLGAGKPYYALALLALIVPQIVFQF-QYFLKDPIKYDVKYQASAQPFLI 362 (374)
Q Consensus 310 ~l~~~~~~~~~~~~~~~l~~l~lpl~~~~~-~~~~~~~~~~~~~~~~~~~~~l~ 362 (374)
...++..+.+++||.. +.. ....+..++ +..++||.+|.++++..++..+.
T Consensus 284 a~aG~~s~q~~pyy~~-lg~-~~~~L~~~i~~vdiDnp~dC~k~f~sN~ntGli 335 (353)
T KOG1381|consen 284 AAAGIASDQTWPYYAA-LGA-VAARLGSQIYKVDIDNPSDCWKKFKSNSNTGLI 335 (353)
T ss_pred HHhhhccCCCchHHHH-HHH-HHHHHHhheeeeecCChHHHHHHHHhcCcchHH
Confidence 7888888889988875 333 333444444 45699999999999988876544
No 45
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=99.97 E-value=4.8e-29 Score=234.54 Aligned_cols=189 Identities=32% Similarity=0.522 Sum_probs=153.7
Q ss_pred hHHHHHHHHHHHHhh--CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccc--cCCCCCccccccCHHHHHH
Q 017282 96 WPPLIWGIVCGAAAS--GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAI--NEPYRPIPSGAISENEVIT 171 (374)
Q Consensus 96 ~~~~~~~~~~G~~~~--g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~--n~~~Rpl~sG~is~~~a~~ 171 (374)
|..++.|++.|.... +..++. . ....+++..+.+.++|.+|||+|+|+|+. |+|+||+++|+++++++..
T Consensus 1 ~~~~~~~~l~~~~~~~~~~~~~~--~----~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~ 74 (257)
T PF01040_consen 1 LPLSFLPVLAGLALASGGPFNWP--I----FLLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALI 74 (257)
T ss_pred ChHHHHHHHHHHHHHHcCCCCHH--H----HHHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHH
Confidence 345677888875533 233442 1 22223334468889999999999999999 7799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHHHHHhHHHHHHHHHHhCCCCH
Q 017282 172 QIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTP 251 (374)
Q Consensus 172 ~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg~~~g~lp~~~~~a~~g~~~~ 251 (374)
.+.++.++++++++.. ++..+.+.++..+.++.|| +|+++||+++++++.+|+.++..+..++++..++.+.
T Consensus 75 ~~~~~~~l~l~l~~~~-------~~~~~~~~~~~~~~~~~Ys-~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (257)
T PF01040_consen 75 FALILLLLGLLLALLL-------GPWFLLILLLGFLLGLLYS-PPLRLKRRPLWGELVVALVFGLLILLGAYAAGGDPPP 146 (257)
T ss_pred HHHHHHHHHHHHHHhc-------CchhHHHHHHHHHHHHHHh-hhhhhcceeccchhhHHHhhhHhhhhhhhhcCCcccH
Confidence 8888888888877543 4556777777777889999 8889999999999999999887777776676666677
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHH
Q 017282 252 DIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKW 298 (374)
Q Consensus 252 ~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~ 298 (374)
..++.+...+++...+.+.+|++|+|+|+++|+||+|+++|+++++.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~~~~~~ 193 (257)
T PF01040_consen 147 PPFLLAIFFFLLIFAIMFFNDIRDIEGDRKAGRRTLPVLLGEKKARY 193 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCCcchHHHHHHHHHHH
Confidence 77888888888889999999999999999999999999999999988
No 46
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=99.97 E-value=6.8e-28 Score=230.85 Aligned_cols=215 Identities=20% Similarity=0.220 Sum_probs=139.0
Q ss_pred ccchhHHHHHhhhCccchHHHHHHHHHHHHhhCC---CCCchhhHHHHHHHHHHHHHH-HHHHHhhhhcccccccccccC
Q 017282 79 QETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGN---FHWNLEDVAKSIVCMIMSGPC-LTGYTQTINDWYDREIDAINE 154 (374)
Q Consensus 79 ~~~~~l~~~l~L~RP~~~~~~~~~~~~G~~~~g~---~~~~~~~~~~~ll~l~~ag~l-~~~a~~~iNd~~D~~~D~~n~ 154 (374)
....++|.|+++.||++|+.++.|+++|.+.+.. ..+.+ .+++++....+ .+...|.+|||+|+|+|+.|+
T Consensus 3 ~~~~~~~~l~~l~RP~~~~~~~~p~l~G~~lA~~~~~~~~~~-----~~~~ll~~~~i~~Nl~~y~iND~~D~D~Dr~~p 77 (282)
T PRK12875 3 SLGDRLRYLLVLSRPRFWLYLAGPVVVGVAYAADSVADLFSP-----AAVALFAYFLFPANVFLYGVNDVFDADTDELNP 77 (282)
T ss_pred chHHHHHHHHHHhCccchHHHHHHHHHHHHHHhccCcccccH-----HHHHHHHHHHHHHHHHHhcchhhhhhhccccCC
Confidence 3456889999999999999999999999985421 11221 22222221111 123445589999999999998
Q ss_pred CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHHHHH
Q 017282 155 PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASY 234 (374)
Q Consensus 155 ~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg~~~ 234 (374)
+++. |+...++.......+.+++..++..+.... ++....+.+..+++++.||.||+|+|++++. ++.....+
T Consensus 78 rk~~---~r~~~~s~~~~~~~~~~l~~~l~l~l~~~~---~~~~~~~ll~~i~~~~~YS~pP~rlk~~p~~-~~~~~g~~ 150 (282)
T PRK12875 78 KKDR---EREVRYRGDRRVLVAVALSGALALAFLLVL---PPAAWPALLAFLVLSVEYSAPPLRFKTTPVL-DSLSNGLY 150 (282)
T ss_pred CccC---CCCccHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHcCCCccchhccHH-HHHHHHHH
Confidence 6543 221112222211122222223333222111 2222233344567899999999999999995 54432223
Q ss_pred hHHHHHH-HHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHHHH
Q 017282 235 ISLPWWA-GQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQ 308 (374)
Q Consensus 235 g~lp~~~-~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l~~ 308 (374)
.+|.++ ++.++|++++..++. ..++|+.+++++||+||+|+|+++|+||+|+++|+|++++++....+++.
T Consensus 151 -~~~~~~~y~~~tg~~~~~~l~~--a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~ 222 (282)
T PRK12875 151 -ILPGVAAYALVSGSLPPLLAVA--GGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLAA 222 (282)
T ss_pred -HHHHHHHHHHHcCCCcHHHHHH--HHHHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHHHH
Confidence 356554 467788877655443 45789999999999999999999999999999999999988776554444
No 47
>PLN02878 homogentisate phytyltransferase
Probab=99.96 E-value=1.1e-27 Score=226.08 Aligned_cols=181 Identities=25% Similarity=0.491 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHHHHHhhhhcccccccccccCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Q 017282 124 IVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAV 203 (374)
Q Consensus 124 ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l 203 (374)
++...++..+++.+...+|||+|+|+|++|||+||+|||++|+++++.....+.++|+.+++.++. .+ .+...+
T Consensus 25 ~l~~~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~~~lg~~la~~~g~-----~~-l~~al~ 98 (280)
T PLN02878 25 LLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMSFGMGWIVGS-----WP-LFWALF 98 (280)
T ss_pred HHHHHHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCh-----HH-HHHHHH
Confidence 444556667788889999999999999999999999999999999999999999999998887632 12 233334
Q ss_pred HHHHhheecCC--CCcccccccchhhHHHHHHHhH---HHHHHH--HHHhCC---CCHHHHHHHHHHHHHHHHHHHHhhc
Q 017282 204 GGSLLSYIYSA--PPLKLKQNGWIGNFALGASYIS---LPWWAG--QALFGT---LTPDIIVLTLLYSIAGLGIAIVNDF 273 (374)
Q Consensus 204 ~~~~l~~~Ys~--pP~~lK~~~~~g~l~vg~~~g~---lp~~~~--~a~~g~---~~~~~~ll~~~~~l~~~~~~~~~d~ 273 (374)
.+.++++.||. ||+|+||+++....+....-+. ++++.+ ....|. .+...++..+.++++..+++++||+
T Consensus 99 ~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~~~f~~~f~~~i~i~KDi 178 (280)
T PLN02878 99 VSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMCFFSVVIALFKDI 178 (280)
T ss_pred HHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHHHHHHHHHHHHHHHHhhC
Confidence 55578999996 9999999998766443222111 222222 122342 3334444444566777889999999
Q ss_pred cChHhhHHCCCcccceecChhhHHHHHHHHHHHHHHH
Q 017282 274 KSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQIS 310 (374)
Q Consensus 274 ~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l~~l~ 310 (374)
+|+|||++.|++|+|+++|++++.+++..++.+++..
T Consensus 179 ~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~ 215 (280)
T PLN02878 179 PDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAA 215 (280)
T ss_pred cCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998887788764
No 48
>PRK13591 ubiA prenyltransferase; Provisional
Probab=99.94 E-value=6.8e-25 Score=210.33 Aligned_cols=172 Identities=20% Similarity=0.257 Sum_probs=123.3
Q ss_pred HHHHHHHhhhhcccccccccccCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhhee
Q 017282 132 PCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYI 211 (374)
Q Consensus 132 ~l~~~a~~~iNd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~ 211 (374)
.+...++|++|||+|+|+|++|+|+||.+ +++.++.++.+..++|+.+++.. ++ ..+++++.+.++.
T Consensus 68 ~L~~~s~~~iNd~~D~eiD~IN~P~r~~~----s~~~a~~ls~la~llGl~La~~~-------g~--~ll~ll~~l~g~l 134 (307)
T PRK13591 68 GLIIYSVYTLDRALDSEEDAVNRSELIGS----NKKIGLLVSLLAFLLGTYILAMD-------GM--LLLAFLPFITGYL 134 (307)
T ss_pred HHHHHHHHHHhhhccchhhhccCcccccc----CHHHHHHHHHHHHHHHHHHHHHH-------hH--HHHHHHHHHHHHH
Confidence 35677899999999999999999999987 67777777777766676666644 33 2356788888999
Q ss_pred cCCC----Cc--ccccccchhhHHHHHHHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCc
Q 017282 212 YSAP----PL--KLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQ 285 (374)
Q Consensus 212 Ys~p----P~--~lK~~~~~g~l~vg~~~g~lp~~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~ 285 (374)
||.+ |+ ++|..+.+||+++|.++|...+.+.....+.. .......+..+...++..++||++|+|+|++.|+|
T Consensus 135 YS~Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~~g~~~~~~-~~~~~i~l~~~~~l~~~~iindirDiEGDr~~G~k 213 (307)
T PRK13591 135 YSKGIKIGKFALKLKGGLGVKNIVVGITWGGFIAGIAGSYCGSL-IPVGLIFLFFGVKLFINSCVYDFKDVKGDTLAGIK 213 (307)
T ss_pred hcCCCCCCCccccccCCCchhHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHcCCe
Confidence 9986 55 67777777999999999975532211111221 11111111222223566789999999999999999
Q ss_pred ccceecChhhHHHHHHHHHHHHHHHH-HHHHhh
Q 017282 286 SLPVAFGPETAKWICVGAIDITQISV-AGYLLG 317 (374)
Q Consensus 286 TLpv~~G~~~a~~l~~~~~~l~~l~l-~~~~~~ 317 (374)
|+|+++|++++++++..+..++++.+ ++...|
T Consensus 214 TLPV~lG~~~A~~l~~~l~~~~~l~li~~~~~g 246 (307)
T PRK13591 214 TLPVSLGEQKTRNLLLGIHLFSHLVLGIALIFG 246 (307)
T ss_pred eEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887777666543 333444
No 49
>PRK13592 ubiA prenyltransferase; Provisional
Probab=99.93 E-value=5e-24 Score=202.72 Aligned_cols=219 Identities=16% Similarity=0.156 Sum_probs=142.5
Q ss_pred HHHHHHHHhhhhcccccccccccCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhhe
Q 017282 131 GPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSY 210 (374)
Q Consensus 131 g~l~~~a~~~iNd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~ 210 (374)
+++..+++|++|||+|+|+|++|+|+||+|||++|+++++.++..+.++++.++... ...+...++.+
T Consensus 55 vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~------------~i~i~~~~i~~ 122 (299)
T PRK13592 55 VFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVLLNVLF------------MNNVGWFLFLY 122 (299)
T ss_pred HHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHH
Confidence 456788999999999999999999999999999999999998888866666555433 12223334455
Q ss_pred ec-----CCCCcccccccchhhHHHHHHHhHHHHHH------HH--HHhCCCCHH--HHHHHHHHHHHHHHHHHHhhccC
Q 017282 211 IY-----SAPPLKLKQNGWIGNFALGASYISLPWWA------GQ--ALFGTLTPD--IIVLTLLYSIAGLGIAIVNDFKS 275 (374)
Q Consensus 211 ~Y-----s~pP~~lK~~~~~g~l~vg~~~g~lp~~~------~~--a~~g~~~~~--~~ll~~~~~l~~~~~~~~~d~~D 275 (374)
.| +. ++|+.++.||+.++...|.....+ .+ ...|..... .+++++..++..+++++.+|++|
T Consensus 123 lY~~lm~a~---~~K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~~~~~~~~~l~l~afl~~l~rEI~KdieD 199 (299)
T PRK13592 123 IYGTLMSFW---FFKRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLPLLSLPTVLLAFTMYFPSLIWEVCRKIRA 199 (299)
T ss_pred HHHHHHHHH---HHcccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 55 65 799999999999988877433111 11 112322211 24556677788899999999999
Q ss_pred hHhhHHCCCcccceecChhhHHHHHHHHHHHHHH-HHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHH--H
Q 017282 276 VEGDRAMGLQSLPVAFGPETAKWICVGAIDITQI-SVAGYL-LGAGKPYYALALLALIVPQIVFQFQYFLKDPIKYD--V 351 (374)
Q Consensus 276 ~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l~~l-~l~~~~-~~~~~~~~~~~l~~l~lpl~~~~~~~~~~~~~~~~--~ 351 (374)
|||++ |.+|+|+.+|.|+|.++...+..+..+ +.++++ .|. .... +..+...+...+...++++|.+.+ .
T Consensus 200 -~gd~~-~~~Tlpi~~G~kkA~~ia~~l~ii~v~~s~lp~~~~g~--~g~~--~l~~~~~~~l~~~~~~lk~p~~~~~~~ 273 (299)
T PRK13592 200 -PKDET-EYVTYSKLFGYKKATRFIEVVTLLDILTNFALLWNISH--VGVV--VLVLNVIWMTVQFEQFIKSPTRFNIRE 273 (299)
T ss_pred -Ccccc-CCeeechhccchhHHHHHHHHHHHHHHHhhHHHHHhhh--hHHH--HHHHHHHHHHHHHHHHhcCCCcchhhH
Confidence 88875 599999999999999887765544443 345554 331 1111 111222333334445677775421 2
Q ss_pred HHHHhHHHHHHHHHHHHHH
Q 017282 352 KYQASAQPFLILGLLVTAL 370 (374)
Q Consensus 352 ~~~~~~~~~l~~gll~~~~ 370 (374)
+-++..+..+.++++..++
T Consensus 274 ~~~~~~ki~~~l~~la~~~ 292 (299)
T PRK13592 274 RVERYTYITETTMVLSVAV 292 (299)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444443
No 50
>KOG4581 consensus Predicted membrane protein [Function unknown]
Probab=99.90 E-value=2.3e-24 Score=194.72 Aligned_cols=297 Identities=18% Similarity=0.215 Sum_probs=220.9
Q ss_pred ccCCchhhhhhhccccccchhHHHHHhhhCccchHHHHHHHHHHHHhhCCCCCchhh--HHHHHHHHHHHHHHHHHHHhh
Q 017282 63 ASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLED--VAKSIVCMIMSGPCLTGYTQT 140 (374)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~l~~~l~L~RP~~~~~~~~~~~~G~~~~g~~~~~~~~--~~~~ll~l~~ag~l~~~a~~~ 140 (374)
.|.+-..+|-|-...|+...+.+.|+-..||+.+..++.|..+|.+.+-.-+|. ++ +...++|.+ +..-++.++|.
T Consensus 40 ~gv~~~~rltghp~~sg~~~k~~syllalrpws~sasl~p~~lgsalayrs~~~-~d~~l~~~fl~a~-avlavh~agnl 117 (359)
T KOG4581|consen 40 AGVAEQDRLTGHPQRSGTFMKCASYLLALRPWSFSASLTPTALGSALAYRSHGA-EDFRLATFFLCAF-AVLAVHCAGNL 117 (359)
T ss_pred cCCcccccccCCCCcchHHHHHHHHHhhhcccccccccchHhhhhHHHHhhccc-cchhHHHHHHHHh-hheeeecccch
Confidence 345556677777777888999999999999999999999999998754222221 11 122334433 22336889999
Q ss_pred hhccccc--ccccccCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhH----HHHHHHHHHHhheecCC
Q 017282 141 INDWYDR--EIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPT----IFWLAVGGSLLSYIYSA 214 (374)
Q Consensus 141 iNd~~D~--~~D~~n~~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~----~~~l~l~~~~l~~~Ys~ 214 (374)
+|.|+|. .+|.+...+|.+++..+.+.++..++..+..+++.....+... .|. ...+...+.--.++|+.
T Consensus 118 vntyfdf~kgid~kkaddrtlvd~il~~~dvv~~g~~ly~~gc~~~~~l~~l----sp~klehlaliyfggls~sflytg 193 (359)
T KOG4581|consen 118 VNTYFDFIKGIDHKKADDRTLVDHILEKDDVVRFGAFLYMAGCGCAACLAVL----SPAKLEHLALIYFGGLSGSFLYTG 193 (359)
T ss_pred hhhhhhhhhccccccccchhHHHHhcChhheehhhHHHHHhcchHHHHHHhC----CHhhhhhhhhhhccCcccceeEec
Confidence 9999998 5788877899999999999999999998888887766554432 121 12222334445789997
Q ss_pred CCcccccccchhhHHHHHHHhHHHHH-HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecCh
Q 017282 215 PPLKLKQNGWIGNFALGASYISLPWW-AGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGP 293 (374)
Q Consensus 215 pP~~lK~~~~~g~l~vg~~~g~lp~~-~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~ 293 (374)
+- .+||..+ |++++-+.||.+.++ +...++|++++.++..++|..+-+-++.+.||.||.|.||++|+-|+++.+|+
T Consensus 194 gi-gfkyial-gdliili~fgpiavlfaf~~q~g~l~~~~l~yaiplalnteailhsnntrd~dndr~agivtlailig~ 271 (359)
T KOG4581|consen 194 GI-GFKYIAL-GDLIILILFGPIAVLFAFAIQTGHLAIFPLGYAIPLALNTEAILHSNNTRDADNDREAGIVTLAILIGP 271 (359)
T ss_pred cc-ceEEEec-cCEEEEEeechHHHHHHHHHhcCceeEEeehheeeeccchHHHhccCCCcccccccccCeEEEEEeecc
Confidence 64 6899988 788777778876655 44578999998888888899888899999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHhHHHHHHHHHHHHHHh
Q 017282 294 ETAKWICVGAIDITQISVAGYLLGAGKPYYALALLALIVPQIVFQFQYFLKDPIKYDVKYQASAQPFLILGLLVTALA 371 (374)
Q Consensus 294 ~~a~~l~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~l~lpl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gll~~~~~ 371 (374)
..+..++..++...++....+...... ++ .+.++++|+.+ +++...++.+..+...++++++.++||++...-+
T Consensus 272 t~s~ily~~llf~py~lf~i~~~~~si-~~--~lplltip~af-qiek~frneqa~~~lp~qtakln~~~gi~yv~~~ 345 (359)
T KOG4581|consen 272 TASHILYAMLLFAPYLLFFIFALHCSI-SF--ALPLLTIPMAF-QIEKQFRNEQAFHKLPQQTAKLNFFFGIFYVFAC 345 (359)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH-HH--HhHHhhchhHH-hHHHHhhhHhhhhhcchhhhhHHHHHHHHHHHHH
Confidence 988888887776666543322222222 22 35667889876 4555567777788888999999999999875443
No 51
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=99.88 E-value=1.5e-20 Score=180.95 Aligned_cols=192 Identities=22% Similarity=0.225 Sum_probs=126.8
Q ss_pred cchhHHHHHhhhCccchHHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhccccccccccc--CCCC
Q 017282 80 ETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAIN--EPYR 157 (374)
Q Consensus 80 ~~~~l~~~l~L~RP~~~~~~~~~~~~G~~~~g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n--~~~R 157 (374)
.++++++|++++||+.|...++...-+.+..+..+.. .+. ..+..++++.+..+++|++||++|+|+|++| +|+|
T Consensus 7 ~~~~l~~~l~L~RP~~w~~nll~~~~~~~a~~~~~~~--~~~-~~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~R 83 (295)
T PRK12324 7 PKNLLAGYLKLLRPKQWIKNLFVFAAPIFAGNLLNPG--ALL-KVLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRNR 83 (295)
T ss_pred hHHHHHHHHHHhCchHHHHHHHHHHHHHHHHhhcccc--hHH-HHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCCC
Confidence 3458999999999999988766443332222111211 111 2233444555678899999999999999998 4899
Q ss_pred CccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHHHHHhHH
Q 017282 158 PIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISL 237 (374)
Q Consensus 158 pl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg~~~g~l 237 (374)
|+++|++++++++.++.++.++++.+++.+ ++.++.+.+...+..+.||. ++|++++++++.++..++.
T Consensus 84 PlasG~is~~~A~~~~~~l~~~~l~la~~l-------~~~~~~~~~~~~~~~~~Ys~---~lK~~~~~d~l~va~~~~l- 152 (295)
T PRK12324 84 PIASGVVSVSLAYILAVVLLVASLALAYLL-------SPKLALVLLVYLVLNLAYSF---KLKHQPVLDVFCIASGFVL- 152 (295)
T ss_pred CCCCCccCHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhH---HhcCCchhhHHHHHHHHHH-
Confidence 999999999999999999988888887765 44455555666677899995 8999999999998888864
Q ss_pred HHHHHHHHhCCCCHHHHHH--HHHHHHHHHHHHHHhhccChHhhHHCCCcc
Q 017282 238 PWWAGQALFGTLTPDIIVL--TLLYSIAGLGIAIVNDFKSVEGDRAMGLQS 286 (374)
Q Consensus 238 p~~~~~a~~g~~~~~~~ll--~~~~~l~~~~~~~~~d~~D~e~D~~aG~~T 286 (374)
+++.|....+ .+...|++ ++..+++-....-..+.++.++|.+..+++
T Consensus 153 r~~~G~~a~~-~~~s~wll~~~~~~~lfla~~kR~~E~~~~~~~~~~~r~~ 202 (295)
T PRK12324 153 RAIAGGVAIG-VPLSPWLLLCTALLSLFLAAGKRKAELRLLEDTGAKHRKV 202 (295)
T ss_pred HHHHHHHHhC-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Confidence 5554443333 33333332 222222222223344555555554444444
No 52
>PRK08238 hypothetical protein; Validated
Probab=99.86 E-value=1.2e-19 Score=185.71 Aligned_cols=200 Identities=20% Similarity=0.234 Sum_probs=146.9
Q ss_pred hhhhhhhcccc-----ccchhHHHHHhhhCccchHHHHHHHHHHHHhhCCC-CCchhhHHHHHHHHHHHHHHHHHHHhhh
Q 017282 68 FNQLLGIKGAA-----QETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNF-HWNLEDVAKSIVCMIMSGPCLTGYTQTI 141 (374)
Q Consensus 68 ~~~~~~~~~~~-----~~~~~l~~~l~L~RP~~~~~~~~~~~~G~~~~g~~-~~~~~~~~~~ll~l~~ag~l~~~a~~~i 141 (374)
.++.-..++.. ..+.++++|++++||+.|...++.. ++++.++.+ +. ..+. ..+..++++.++.+++|++
T Consensus 170 l~~~a~~~~~~~~~~~~~~~~~~~~~~l~Rp~q~~kn~l~~-~p~l~a~~~~~~--~~~~-~~~~~f~~~~l~~sa~~~~ 245 (479)
T PRK08238 170 VARAARALGPVERVFPPRPARLRTWLKALRVHQWAKNLLVF-VPLLAAHQFGDL--QALL-AALLAFLAFSLCASAVYIL 245 (479)
T ss_pred HHHHHHHcCCcceecCCCchHHHHHHHHhCCcHHHHHHHHH-HHHHHhcccCCh--HHHH-HHHHHHHHHHHHHHHHHHH
Confidence 44444444442 4457899999999999998766543 355544433 22 1122 2344555666788999999
Q ss_pred hcccccccccccC--CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCccc
Q 017282 142 NDWYDREIDAINE--PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKL 219 (374)
Q Consensus 142 Nd~~D~~~D~~n~--~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~l 219 (374)
||++|+|+|++|+ |+||+++|++|+++++.++.+++++++.+++.+ ++.++.+.+..+++.+.||. ++
T Consensus 246 ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~~~~~~l~~~l-------~~~~~~~~~~~~~~~~~Ys~---~l 315 (479)
T PRK08238 246 NDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAGLALALAL-------GPAFLLVLLAYLALTLAYSL---RL 315 (479)
T ss_pred HhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHhhH---Hh
Confidence 9999999999995 899999999999999999999999998888775 44455666666677899995 79
Q ss_pred ccccchhhHHHHHHHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCC
Q 017282 220 KQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGL 284 (374)
Q Consensus 220 K~~~~~g~l~vg~~~g~lp~~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~ 284 (374)
||+++++++++|+.+++-++.| .+..+ .++..|++...+ ++.+...+.+.+.|.++++..|.
T Consensus 316 Kr~~~~~~~~la~~~~lr~~~G-~~a~~-~~~s~wll~~~~-~~~l~la~~KR~~El~~~~~~~~ 377 (479)
T PRK08238 316 KRKVLVDVLTLAALYTLRIIAG-AAAIG-VALSFWLLAFSM-FFFLSLALVKRYTELRRALQRGK 377 (479)
T ss_pred cCCccccchHHHHHHHHHHHHH-HHHhc-cCHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHhcCC
Confidence 9999999999999886544444 34444 666666654333 33456678899999999988886
No 53
>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]
Probab=99.84 E-value=5.9e-21 Score=180.17 Aligned_cols=268 Identities=18% Similarity=0.172 Sum_probs=191.7
Q ss_pred hhHHHHHhhhCccchHHHHHHHHHHHHhh-CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccC--CCCC
Q 017282 82 NKWKIRLQLTKPVTWPPLIWGIVCGAAAS-GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRP 158 (374)
Q Consensus 82 ~~l~~~l~L~RP~~~~~~~~~~~~G~~~~-g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n~--~~Rp 158 (374)
...+.|+||.||+...+.+.....|++.+ +.++++ .+++..++..+..+++|.+|++++...|.+++ ++||
T Consensus 92 k~~~~y~eLsK~rLT~LVV~tt~~gYalap~p~s~~------~l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT~~Rp 165 (409)
T KOG1380|consen 92 KYARCYLELSKPRLTMLVVLTTMTGYALAPGPFSFP------TLLYTTVGTGLCSASANAINQIFEPPFDSQMKRTQNRP 165 (409)
T ss_pred chHHHHHHhcccceEEEEeeeccccccccccCCCcc------hhHHHhhhhHHHHhhhHhhhhhccCCchhhhHhhcccc
Confidence 45789999999999999999999999854 556664 23444445556778999999999999999998 6999
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHh-heecCCCCcccccccchhhHHHHHHHhHH
Q 017282 159 IPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLL-SYIYSAPPLKLKQNGWIGNFALGASYISL 237 (374)
Q Consensus 159 l~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l-~~~Ys~pP~~lK~~~~~g~l~vg~~~g~l 237 (374)
+++|++||.++..++.+....|+.+.++ +.||....+|...+++ +.+|| ++||... .|.++|...|.+
T Consensus 166 lv~g~isp~hA~~fAt~~g~~G~slL~~------gvNpl~a~Lga~Ni~LY~~vYT----PlKrihi-inTWvGavVGAI 234 (409)
T KOG1380|consen 166 LVRGRISPLHAVTFATLTGTAGVSLLAF------GVNPLAAALGAGNIFLYAGVYT----PLKRIHI-INTWVGAVVGAI 234 (409)
T ss_pred cccCccChHHHHHHHHHhccccceeeee------cccHHHHHHhhcchheeecccc----chhhhhh-hhhHHHHHhccC
Confidence 9999999999999888887777665543 2378888888887765 88999 7999988 699999999988
Q ss_pred HH-HHHHHHhCCCCHHHHHHHHHHHHHHHHH--HHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHHHHHHHHHH
Q 017282 238 PW-WAGQALFGTLTPDIIVLTLLYSIAGLGI--AIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAGY 314 (374)
Q Consensus 238 p~-~~~~a~~g~~~~~~~ll~~~~~l~~~~~--~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l~~l~l~~~ 314 (374)
|. +||.+..|.+++..++++...+.|.+-- .+..++ ++|..++|.+++++.-..-..+.-....+.+..++...-
T Consensus 235 PPLMGwAAasg~l~~ga~iLa~~LyaWQfPHFnaLS~~l--R~DYs~~GY~Mma~~np~l~rr~alr~s~a~~~L~~~~~ 312 (409)
T KOG1380|consen 235 PPLMGWAAASGLLDPGAMILAGILYAWQFPHFNALSWNL--RNDYSKAGYRMMAVTNPGLCRRVALRYSLAFLPLSYAAP 312 (409)
T ss_pred CccchhhhhccCCCccHHHHHHHHHHhcccchhhhhhhh--chhhhhccEEEEEeeccchhhHHHHHHHHHHhhhhcccc
Confidence 75 4667788999999999999999987521 112222 355669999999998754444333333222222333223
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHhHHHHHHHHHHHH
Q 017282 315 LLGAGKPYYALALLALIVPQIVFQFQYFLKDPIKYDVKYQASAQPFLILGLLVT 368 (374)
Q Consensus 315 ~~~~~~~~~~~~l~~l~lpl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gll~~ 368 (374)
..++..++|.+-...+..-+.+..+|...+...+...+++..+.+|+=.-+++.
T Consensus 313 ~~~lT~~wf~i~s~~~na~l~~~afkFY~~~d~~~aRklF~aSLlhLP~lmll~ 366 (409)
T KOG1380|consen 313 STDLTTWWFAIESLPLNAYLAYLAFKFYRDRDYHNARKLFFASLLHLPLLMLLM 366 (409)
T ss_pred ccCcccceeeeccccHhHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHH
Confidence 445554455432333444555666665445555678888889888876444443
No 54
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=93.36 E-value=2.1 Score=41.58 Aligned_cols=37 Identities=22% Similarity=0.074 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhhccChHhhHHCCC-cccceecChhh
Q 017282 259 LYSIAGLGIAIVNDFKSVEGDRAMGL-QSLPVAFGPET 295 (374)
Q Consensus 259 ~~~l~~~~~~~~~d~~D~e~D~~aG~-~TLpv~~G~~~ 295 (374)
..++...+-..+||+.|+|-|+++-+ |.=|..-|+=.
T Consensus 52 g~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~sG~is 89 (294)
T PRK12873 52 GGLAVSGAGCIANDLWDRRIDRKVERTKNRPLARGKIS 89 (294)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCcCCCCCCCCCCCC
Confidence 33444556689999999999998877 57777777543
No 55
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=93.29 E-value=5.4 Score=38.39 Aligned_cols=40 Identities=23% Similarity=0.225 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHhhccChHhhHHCCC-cccceecChh
Q 017282 255 VLTLLYSIAGLGIAIVNDFKSVEGDRAMGL-QSLPVAFGPE 294 (374)
Q Consensus 255 ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~-~TLpv~~G~~ 294 (374)
+..+..++...+...+||+.|+|-|++.-+ |.=|..-|+-
T Consensus 51 l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~v 91 (289)
T COG0382 51 LAFLAFFLARSAGYVINDLADREIDRINPRTKNRPLPSGRV 91 (289)
T ss_pred HHHHHHHHHHHHhHHHHHHhhhhccCCCCCccCCCCCCCCC
Confidence 334444556667789999999999998876 4556666654
No 56
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=93.04 E-value=2 Score=41.10 Aligned_cols=36 Identities=25% Similarity=0.200 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHhhccChHhhHHCCCcccceecCh
Q 017282 257 TLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGP 293 (374)
Q Consensus 257 ~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~ 293 (374)
.+..++...+-...||+-|+|.|++. ++.=|..-|+
T Consensus 43 ~l~~~l~~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~ 78 (279)
T PRK12884 43 FLTAFFASGSANALNDYFDYEVDRIN-RPDRPIPSGR 78 (279)
T ss_pred HHHHHHHHHHHHHHHhhhhHhhhhcc-CCCCCCCCCC
Confidence 33444556667899999999999998 7777887775
No 57
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=93.03 E-value=1.7 Score=42.38 Aligned_cols=32 Identities=19% Similarity=0.122 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhhccChHhhHHCCCcccceecCh
Q 017282 261 SIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGP 293 (374)
Q Consensus 261 ~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~ 293 (374)
.+...+....||+-|.|.|++.+ ++=|+.-|+
T Consensus 64 ~l~~~~~n~~NDy~D~d~D~~~~-~~Rpi~~G~ 95 (306)
T TIGR02056 64 PCLTGYTQTINDFYDRDIDAINE-PYRPIPSGA 95 (306)
T ss_pred HHHHHHHHHHHhHhhhhhhccCC-CCCCCCCCc
Confidence 44556678999999999998776 344555554
No 58
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=92.64 E-value=3.8 Score=39.67 Aligned_cols=37 Identities=19% Similarity=0.146 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhhccChHhhHHCCC-cccceecChhhH
Q 017282 260 YSIAGLGIAIVNDFKSVEGDRAMGL-QSLPVAFGPETA 296 (374)
Q Consensus 260 ~~l~~~~~~~~~d~~D~e~D~~aG~-~TLpv~~G~~~a 296 (374)
.++...+-..+||+.|+|-|+++.+ +.=|..-|+=..
T Consensus 54 ~~~~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~is~ 91 (289)
T PLN02809 54 ALLLRGAGCTINDLLDRDIDKKVERTKLRPIASGALTP 91 (289)
T ss_pred HHHHHHHHHHHHhhHHhccccCCCCCCCCCCCCCCCCH
Confidence 3445556689999999999998766 577877785433
No 59
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=91.98 E-value=7.5 Score=37.82 Aligned_cols=33 Identities=33% Similarity=0.510 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhhccChHhhHHC-CCcccceecCh
Q 017282 261 SIAGLGIAIVNDFKSVEGDRAM-GLQSLPVAFGP 293 (374)
Q Consensus 261 ~l~~~~~~~~~d~~D~e~D~~a-G~~TLpv~~G~ 293 (374)
++...+...+||+.|+|.|++. .++.=|..=|+
T Consensus 56 ~l~~sa~y~iND~~D~e~Dr~~prk~~RPlasG~ 89 (295)
T PRK12324 56 CLASSAVYLVNDIRDVEADRLHPTKRNRPIASGV 89 (295)
T ss_pred HHHHHHHHHHHhHHHHHhhccCCCCCCCCCCCCc
Confidence 3444566799999999999996 33444554454
No 60
>PRK13595 ubiA prenyltransferase; Provisional
Probab=91.77 E-value=8.3 Score=37.49 Aligned_cols=25 Identities=28% Similarity=0.061 Sum_probs=18.4
Q ss_pred HHHHHHHhhccChHhhHHCCCcccce
Q 017282 264 GLGIAIVNDFKSVEGDRAMGLQSLPV 289 (374)
Q Consensus 264 ~~~~~~~~d~~D~e~D~~aG~~TLpv 289 (374)
.....-+||+-|+|.|+++-++ =++
T Consensus 60 n~~~~giND~fD~eiDa~Npr~-~~i 84 (292)
T PRK13595 60 NLLIYGLNDLADRETDAASPRK-GGW 84 (292)
T ss_pred HHHHHHHHhhhhhhhhccCCCC-CCC
Confidence 3456789999999999876544 344
No 61
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=91.43 E-value=9.4 Score=36.43 Aligned_cols=36 Identities=22% Similarity=0.139 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhhccChHhhHHCCCcccceecChh
Q 017282 258 LLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPE 294 (374)
Q Consensus 258 ~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~ 294 (374)
+..++...+-...||+-|+|-|+.. ++.=|..-|+=
T Consensus 45 l~~~l~~~~~~~~Nd~~D~~iD~~~-~~~Rpl~~G~i 80 (276)
T PRK12882 45 AAVFLATGAGNAINDYFDREIDRIN-RPDRPIPSGAV 80 (276)
T ss_pred HHHHHHHHHHHHHHHHhhhcccccc-CCCCCcCCCCc
Confidence 3344555667889999999999965 46667766653
No 62
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=91.33 E-value=1.8 Score=41.74 Aligned_cols=33 Identities=21% Similarity=0.061 Sum_probs=25.7
Q ss_pred HHHHHHHHhhhhcccccccccccC-CCCCccccc
Q 017282 131 GPCLTGYTQTINDWYDREIDAINE-PYRPIPSGA 163 (374)
Q Consensus 131 g~l~~~a~~~iNd~~D~~~D~~n~-~~Rpl~sG~ 163 (374)
..+.+.+-.++|++.|+|.|++.+ |+=|+.-|.
T Consensus 168 ~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~ 201 (284)
T PRK12888 168 VGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGV 201 (284)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCc
Confidence 345666788999999999999887 777776553
No 63
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=91.25 E-value=5.3 Score=38.42 Aligned_cols=35 Identities=20% Similarity=0.181 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhhccChHhhHHCCC-cccceecChhh
Q 017282 261 SIAGLGIAIVNDFKSVEGDRAMGL-QSLPVAFGPET 295 (374)
Q Consensus 261 ~l~~~~~~~~~d~~D~e~D~~aG~-~TLpv~~G~~~ 295 (374)
++...+-...||+-|+|-|++..+ +.=|..-|+-.
T Consensus 50 ~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is 85 (281)
T TIGR01474 50 ILMRGAGCVINDIWDRDFDPQVERTKSRPLASGAVS 85 (281)
T ss_pred HHHHHHHHHHHhHhhhcccccCCcccCCCCCCCCcC
Confidence 444556689999999999987654 24555556543
No 64
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=90.40 E-value=4.3 Score=39.17 Aligned_cols=18 Identities=22% Similarity=0.121 Sum_probs=15.4
Q ss_pred HHhhccChHhhHHCCCcc
Q 017282 269 IVNDFKSVEGDRAMGLQS 286 (374)
Q Consensus 269 ~~~d~~D~e~D~~aG~~T 286 (374)
.+||+.|+|.|+...+|.
T Consensus 63 ~iND~~D~D~Dr~~prk~ 80 (282)
T PRK12875 63 GVNDVFDADTDELNPKKD 80 (282)
T ss_pred cchhhhhhhccccCCCcc
Confidence 479999999999887775
No 65
>PLN00012 chlorophyll synthetase; Provisional
Probab=90.36 E-value=4 Score=41.06 Aligned_cols=31 Identities=19% Similarity=0.078 Sum_probs=22.0
Q ss_pred HHHHHHHHhhccChHhhHHCCCcccceecChh
Q 017282 263 AGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPE 294 (374)
Q Consensus 263 ~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~ 294 (374)
...+-..+||+-|+|-|++++ +.=|+.-|.-
T Consensus 135 ~~~~an~iNDy~D~~iD~~~~-~~Rpi~sG~I 165 (375)
T PLN00012 135 LTGYTQTINDWYDREIDAINE-PYRPIPSGAI 165 (375)
T ss_pred HHHHHHHHHCeecHhhhccCC-CCCCcCCCcc
Confidence 344567899999999998875 4455555543
No 66
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=90.08 E-value=5.7 Score=37.93 Aligned_cols=31 Identities=23% Similarity=0.285 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhccChHhhHHCCCcccceecCh
Q 017282 262 IAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGP 293 (374)
Q Consensus 262 l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~ 293 (374)
+...+-...||+-|+|.|+.. +++=|+.-|+
T Consensus 48 ~~~~a~~~~Nd~~D~~~D~~n-~~~Rpl~sG~ 78 (277)
T PRK12883 48 LGCSGGNTINDYFDYEIDKIN-RPNRPLPRGA 78 (277)
T ss_pred HHHHHHhHHHhhhhHhccccC-CCCCCCCCCc
Confidence 334567899999999999975 4666776664
No 67
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=89.97 E-value=2.7 Score=41.54 Aligned_cols=31 Identities=16% Similarity=0.008 Sum_probs=23.7
Q ss_pred HHHHHHHhhhhcccccccccccC-CCCCcccc
Q 017282 132 PCLTGYTQTINDWYDREIDAINE-PYRPIPSG 162 (374)
Q Consensus 132 ~l~~~a~~~iNd~~D~~~D~~n~-~~Rpl~sG 162 (374)
.+...+..++||+-|+|.|+..+ +.=|+.=|
T Consensus 190 ~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G 221 (331)
T PRK12392 190 FFMAIALIIMNDFKSVEGDKEGGLKSLTVMIG 221 (331)
T ss_pred HHHHHHHHHHHcccchhhHHHcCCeeeEeEEc
Confidence 34566778899999999999886 56666544
No 68
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=89.97 E-value=1.7 Score=41.68 Aligned_cols=44 Identities=20% Similarity=0.103 Sum_probs=28.9
Q ss_pred HHHHHhhhhcccccccccccC-CCCCccccccCHHHHHHHHHHHHHHH
Q 017282 134 LTGYTQTINDWYDREIDAINE-PYRPIPSGAISENEVITQIWVLLLAG 180 (374)
Q Consensus 134 ~~~a~~~iNd~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~~~l~~l~ 180 (374)
.....+++||.-|+|.|++++ +.=|..-|+ +.+..+...+.++.
T Consensus 173 ~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~---~~t~~~~~~~~~~~ 217 (285)
T PRK12872 173 KSFIREIVFDIKDIEGDRKSGLKTLPIVLGK---ERTLKFLLILNLLF 217 (285)
T ss_pred HHHHHHHHHhcccchhHHHcCCcccchhcch---HHHHHHHHHHHHHH
Confidence 344566899999999999877 666776554 44444444444333
No 69
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=89.97 E-value=3.7 Score=38.05 Aligned_cols=50 Identities=24% Similarity=0.303 Sum_probs=31.5
Q ss_pred hCCCCHHHHHH-HHHHHHHHHHHHHHhhccChHhhHHC-CCcccceecChhh
Q 017282 246 FGTLTPDIIVL-TLLYSIAGLGIAIVNDFKSVEGDRAM-GLQSLPVAFGPET 295 (374)
Q Consensus 246 ~g~~~~~~~ll-~~~~~l~~~~~~~~~d~~D~e~D~~a-G~~TLpv~~G~~~ 295 (374)
.+..++..+.. .+..++...+....||+.|.|.|+.. +++.-|..-|+-+
T Consensus 17 ~~~~~~~~~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~ 68 (257)
T PF01040_consen 17 GGPFNWPIFLLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRIS 68 (257)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHh
Confidence 34455544333 23334556677889999999999996 4555566555444
No 70
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=89.72 E-value=3.3 Score=40.50 Aligned_cols=30 Identities=20% Similarity=0.121 Sum_probs=21.0
Q ss_pred HHHHHHHHhhccChHhhHHCCCcccceecCh
Q 017282 263 AGLGIAIVNDFKSVEGDRAMGLQSLPVAFGP 293 (374)
Q Consensus 263 ~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~ 293 (374)
...+...+||+-|.|.|++.+ ++=|+.-|.
T Consensus 77 ~~~~~~~~Nd~~D~~~D~~~~-~~Rpl~sG~ 106 (314)
T PRK07566 77 LCGTSQTLNDYFDREVDAINE-PYRPIPSGA 106 (314)
T ss_pred HHHHHHHHhhhhccCccccCC-CCCCCCCce
Confidence 345567999999999998764 444554443
No 71
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=89.65 E-value=7.2 Score=37.47 Aligned_cols=34 Identities=18% Similarity=0.241 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhhccChHhhHHCCC-cccceecChh
Q 017282 261 SIAGLGIAIVNDFKSVEGDRAMGL-QSLPVAFGPE 294 (374)
Q Consensus 261 ~l~~~~~~~~~d~~D~e~D~~aG~-~TLpv~~G~~ 294 (374)
++...+-..+||+-|+|-|++..+ +.=|..-|+=
T Consensus 52 ~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~i 86 (282)
T PRK12848 52 FLMRAAGCVINDYADRDFDGHVKRTKNRPLASGAV 86 (282)
T ss_pred HHHHHHHHHHHhhHHhccCCCCCCCCCCCCCCCCc
Confidence 344556689999999999986554 2445555653
No 72
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=89.39 E-value=7 Score=37.88 Aligned_cols=38 Identities=24% Similarity=0.300 Sum_probs=25.3
Q ss_pred hCCCCHHHHHHH-HHHHHHHHHHHHHhhccChHhhHHCC
Q 017282 246 FGTLTPDIIVLT-LLYSIAGLGIAIVNDFKSVEGDRAMG 283 (374)
Q Consensus 246 ~g~~~~~~~ll~-~~~~l~~~~~~~~~d~~D~e~D~~aG 283 (374)
.|++++...+++ +...+...+....||+-|.|.|+...
T Consensus 34 ~~~f~~~~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~ 72 (296)
T PRK05951 34 FRSFDPLLGALMLLGYFLLHASLNVFNDYKDYVLDCDHH 72 (296)
T ss_pred cCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCccc
Confidence 467777655443 33445566778999999976666654
No 73
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=89.32 E-value=6.3 Score=37.86 Aligned_cols=36 Identities=19% Similarity=0.209 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhhccChHhhHHCCC-cccceecChhh
Q 017282 260 YSIAGLGIAIVNDFKSVEGDRAMGL-QSLPVAFGPET 295 (374)
Q Consensus 260 ~~l~~~~~~~~~d~~D~e~D~~aG~-~TLpv~~G~~~ 295 (374)
.++...+-...||+-|+|-|++..+ ++=|+.-|+-.
T Consensus 54 ~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is 90 (285)
T PRK12847 54 SVLMRSAGCIINDIFDRKIDKHVARTKNRPLASGALS 90 (285)
T ss_pred HHHHHHHHHHHHhHHHhhhccCCCcccCCCCCCCCcC
Confidence 3445566789999999999987654 35566666533
No 74
>PRK13591 ubiA prenyltransferase; Provisional
Probab=89.22 E-value=1.2 Score=43.41 Aligned_cols=72 Identities=25% Similarity=0.324 Sum_probs=39.5
Q ss_pred hhhcccccccccccC-CCCCccccccCHHHHHHHHHHHHHHHH---HHHHHHHHhhccchhHHHHHH-HHHHHhheecCC
Q 017282 140 TINDWYDREIDAINE-PYRPIPSGAISENEVITQIWVLLLAGL---GLAGLLDVWAGHDFPTIFWLA-VGGSLLSYIYSA 214 (374)
Q Consensus 140 ~iNd~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~~~l~~l~l---~l~~~l~~~~g~~~~~~~~l~-l~~~~l~~~Ys~ 214 (374)
.+||+-|.|.|++++ +.=|+.=| ++.+..+...+.+++. +++..+++.. ..|.+.+.+ +.+.++.+.|+.
T Consensus 197 iindirDiEGDr~~G~kTLPV~lG---~~~A~~l~~~l~~~~~l~li~~~~~g~l~--~~~~~~~~s~~~~l~~~~~~~~ 271 (307)
T PRK13591 197 CVYDFKDVKGDTLAGIKTLPVSLG---EQKTRNLLLGIHLFSHLVLGIALIFGVIA--FEPIILLYSFVCGLICIQVYSS 271 (307)
T ss_pred HHHHhhhhHhHHHcCCeeEEEEEC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHHHcC
Confidence 689999999999987 55566555 3344443333333222 2222232221 134333333 345556788997
Q ss_pred CC
Q 017282 215 PP 216 (374)
Q Consensus 215 pP 216 (374)
|+
T Consensus 272 ~~ 273 (307)
T PRK13591 272 PF 273 (307)
T ss_pred Cc
Confidence 65
No 75
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=89.22 E-value=21 Score=34.11 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHhhccChHhhHHCCCcccceecCh
Q 017282 258 LLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGP 293 (374)
Q Consensus 258 ~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~ 293 (374)
+..++...+-..+||+-|+|.|+++. +.=|..-|+
T Consensus 44 l~~~l~~~~~~~iNd~~D~~iD~~~~-~~Rpl~sG~ 78 (279)
T PRK09573 44 LVVFLVCAGGNVINDIYDIEIDKINK-PERPIPSGR 78 (279)
T ss_pred HHHHHHHHHHHHHHhhcccccccccC-CCCCcCCCc
Confidence 34445566778999999999999764 555665554
No 76
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=88.83 E-value=6.5 Score=37.67 Aligned_cols=36 Identities=19% Similarity=0.224 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHhhccChHhhHHCCC-cccceecCh
Q 017282 258 LLYSIAGLGIAIVNDFKSVEGDRAMGL-QSLPVAFGP 293 (374)
Q Consensus 258 ~~~~l~~~~~~~~~d~~D~e~D~~aG~-~TLpv~~G~ 293 (374)
+..++...+-..+||+-|+|-|++..+ +.=|+.-|+
T Consensus 42 ~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~ 78 (280)
T TIGR01473 42 LGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVTGR 78 (280)
T ss_pred HHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCCCC
Confidence 344455566789999999999997543 334554453
No 77
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=88.75 E-value=4 Score=39.57 Aligned_cols=33 Identities=15% Similarity=-0.007 Sum_probs=26.1
Q ss_pred HHHHHHHHhhhhcccccccccccC-CCCCccccc
Q 017282 131 GPCLTGYTQTINDWYDREIDAINE-PYRPIPSGA 163 (374)
Q Consensus 131 g~l~~~a~~~iNd~~D~~~D~~n~-~~Rpl~sG~ 163 (374)
..+.+.+-..+|++.|+|.|++.+ |.=|+.-|.
T Consensus 176 ~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~ 209 (291)
T PRK12874 176 VMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGE 209 (291)
T ss_pred HHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhh
Confidence 345677778899999999998877 777876664
No 78
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=88.58 E-value=10 Score=37.07 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=19.4
Q ss_pred HhhccChHhhHHCCCcccceecChh
Q 017282 270 VNDFKSVEGDRAMGLQSLPVAFGPE 294 (374)
Q Consensus 270 ~~d~~D~e~D~~aG~~TLpv~~G~~ 294 (374)
+||+.|+|-|+. ++++.|+.-|+-
T Consensus 72 iNd~~D~~iD~i-nkp~rPiasG~l 95 (308)
T PRK12887 72 LNQLTDIEIDRI-NKPHLPLAAGEF 95 (308)
T ss_pred HhhhhhHHHHhc-CCCCCCcCCccc
Confidence 999999999985 468888766653
No 79
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=88.42 E-value=6.8 Score=37.94 Aligned_cols=35 Identities=14% Similarity=0.193 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhhccChHhhHHCCC-cccceecCh
Q 017282 259 LYSIAGLGIAIVNDFKSVEGDRAMGL-QSLPVAFGP 293 (374)
Q Consensus 259 ~~~l~~~~~~~~~d~~D~e~D~~aG~-~TLpv~~G~ 293 (374)
..++...+-..+||+.|+|-|+++.+ +.=|+.-|+
T Consensus 52 ~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG~ 87 (296)
T PRK04375 52 GIALVAGAAGALNNYIDRDIDAKMERTKNRPLVTGR 87 (296)
T ss_pred HHHHHHHHHHHHHhHHhhccCCCCCccCCCCCCCCC
Confidence 33445556689999999999998643 334444454
No 80
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=88.38 E-value=13 Score=36.32 Aligned_cols=35 Identities=17% Similarity=0.011 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhhccChHhhHHCCCc-ccceecCh
Q 017282 259 LYSIAGLGIAIVNDFKSVEGDRAMGLQ-SLPVAFGP 293 (374)
Q Consensus 259 ~~~l~~~~~~~~~d~~D~e~D~~aG~~-TLpv~~G~ 293 (374)
..++...+-...||+-|+|-|++..+. .=|..-|+
T Consensus 80 ~~~l~~~a~~~~Nd~~Dr~iD~~~~Rt~~RPl~sG~ 115 (314)
T PRK12878 80 GAIAMRGAGCTYNDIVDRDIDAKVARTRSRPLPSGQ 115 (314)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCC
Confidence 334455566899999999999875431 23444454
No 81
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=88.36 E-value=12 Score=35.83 Aligned_cols=47 Identities=13% Similarity=0.043 Sum_probs=29.2
Q ss_pred CCCCHHHH-HHHHHHHHHHHHHHHHhhccChHhhHHCCC-cccceecCh
Q 017282 247 GTLTPDII-VLTLLYSIAGLGIAIVNDFKSVEGDRAMGL-QSLPVAFGP 293 (374)
Q Consensus 247 g~~~~~~~-ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~-~TLpv~~G~ 293 (374)
+..++... +..+..++...+-...||+.|+|.|+++.+ +.=|+.-|+
T Consensus 31 ~~~~~~~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~sG~ 79 (282)
T TIGR01475 31 GLPGLKTLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSGL 79 (282)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCCCCC
Confidence 44455333 333444556677789999999999998732 233554443
No 82
>PRK13592 ubiA prenyltransferase; Provisional
Probab=88.25 E-value=17 Score=35.37 Aligned_cols=50 Identities=18% Similarity=0.093 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecC---hhhHHHHHHH
Q 017282 252 DIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFG---PETAKWICVG 302 (374)
Q Consensus 252 ~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G---~~~a~~l~~~ 302 (374)
+.++.++..++.+.+-..+||+.|+|-|+.. ++.=|+-=| .+.++.....
T Consensus 47 ~~~l~~~~vf~~~~~gniiNDy~D~EIDrIN-~P~RPLPsG~VS~~~A~~~si~ 99 (299)
T PRK13592 47 QEFVGVFTVFGFWMILRIADDFKDYETDRRL-FPHRALPSGRVKKKDLAIALSF 99 (299)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhhHHHhhhc-CCCCCCCcCCCCHHHHHHHHHH
Confidence 3444444455666677899999999999654 666666555 4445544433
No 83
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=88.10 E-value=8.4 Score=37.26 Aligned_cols=48 Identities=17% Similarity=0.054 Sum_probs=28.9
Q ss_pred CCCCHHHHHH-HHHHHHHHHHHHHHhhccChHhhHHCCCc-ccceecChh
Q 017282 247 GTLTPDIIVL-TLLYSIAGLGIAIVNDFKSVEGDRAMGLQ-SLPVAFGPE 294 (374)
Q Consensus 247 g~~~~~~~ll-~~~~~l~~~~~~~~~d~~D~e~D~~aG~~-TLpv~~G~~ 294 (374)
+..++..+++ .+..++...+-..+||+-|+|-|++..+. .=|..-|+-
T Consensus 41 ~~~~~~~~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~Rt~~RPL~sG~i 90 (290)
T PRK12870 41 GLPPLPLVGIIILGALATSAAGCVVNDLWDRDIDPQVERTRFRPLASRRL 90 (290)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCcccCCCCCCCCc
Confidence 3344433333 23334455566889999999999875543 456555653
No 84
>PRK08238 hypothetical protein; Validated
Probab=87.99 E-value=10 Score=39.49 Aligned_cols=36 Identities=31% Similarity=0.437 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhhccChHhhHHCC-CcccceecChh
Q 017282 259 LYSIAGLGIAIVNDFKSVEGDRAMG-LQSLPVAFGPE 294 (374)
Q Consensus 259 ~~~l~~~~~~~~~d~~D~e~D~~aG-~~TLpv~~G~~ 294 (374)
..++...+..++||+-|+|.|+++- +|.=|..-|+=
T Consensus 234 ~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~i 270 (479)
T PRK08238 234 AFSLCASAVYILNDLLDLEADRAHPRKRRRPFASGAL 270 (479)
T ss_pred HHHHHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCC
Confidence 3445556778999999999999974 34456655543
No 85
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=87.90 E-value=28 Score=33.97 Aligned_cols=48 Identities=15% Similarity=0.141 Sum_probs=29.9
Q ss_pred CCCCHHHHHHH-HHHHHHHHHHHHHhhccChHhhHHCCC-cccceecChh
Q 017282 247 GTLTPDIIVLT-LLYSIAGLGIAIVNDFKSVEGDRAMGL-QSLPVAFGPE 294 (374)
Q Consensus 247 g~~~~~~~ll~-~~~~l~~~~~~~~~d~~D~e~D~~aG~-~TLpv~~G~~ 294 (374)
++.++..++.. +..++...+-...||+.|+|-|++..+ +.=|+.-|+=
T Consensus 42 ~~~~~~~~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG~i 91 (306)
T PRK13362 42 GHVDPVLMLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRNRVTVTGEI 91 (306)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCCCCCCCCCC
Confidence 44555433322 234455567789999999999998755 3445555653
No 86
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=87.85 E-value=6.7 Score=37.62 Aligned_cols=39 Identities=18% Similarity=0.017 Sum_probs=26.1
Q ss_pred HHHHHhhhhcccccccccccC-CCCCccccccCHHHHHHHHHH
Q 017282 134 LTGYTQTINDWYDREIDAINE-PYRPIPSGAISENEVITQIWV 175 (374)
Q Consensus 134 ~~~a~~~iNd~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~~~ 175 (374)
...+....||+-|.|.|++++ +.=|..-| .+.+..+...
T Consensus 173 ~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG---~~~a~~l~~~ 212 (283)
T TIGR01476 173 GAHGIMTLNDFKSVEGDRQLGLRSLPVMIG---VKRAAIVAVT 212 (283)
T ss_pred HHHHHHHHHhccchhhHHHcCCcCcceEEc---HHHHHHHHHH
Confidence 344567899999999999876 55566555 3444443333
No 87
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=87.64 E-value=7.1 Score=38.03 Aligned_cols=27 Identities=26% Similarity=0.144 Sum_probs=21.7
Q ss_pred HHHHHhhhhcccccccccccCCCCCcc
Q 017282 134 LTGYTQTINDWYDREIDAINEPYRPIP 160 (374)
Q Consensus 134 ~~~a~~~iNd~~D~~~D~~n~~~Rpl~ 160 (374)
..+..+..|+..|.|+|++|+|+-+.+
T Consensus 188 l~~~Il~aNNirDie~D~~~gk~TLav 214 (303)
T COG1575 188 LIANILLANNLRDIEEDIRNGKYTLAV 214 (303)
T ss_pred HHHHHHHhcccccchhHHhcCCcceee
Confidence 455678899999999999999765443
No 88
>PLN02776 prenyltransferase
Probab=86.94 E-value=14 Score=36.75 Aligned_cols=46 Identities=13% Similarity=0.042 Sum_probs=29.4
Q ss_pred CCHHHHH-HHHHHHHHHHHHHHHhhccChHhhHHCCC-cccceecChh
Q 017282 249 LTPDIIV-LTLLYSIAGLGIAIVNDFKSVEGDRAMGL-QSLPVAFGPE 294 (374)
Q Consensus 249 ~~~~~~l-l~~~~~l~~~~~~~~~d~~D~e~D~~aG~-~TLpv~~G~~ 294 (374)
.++..++ ..+..++...+-..+||+-|+|-|+++.+ +.=|..-|+=
T Consensus 26 ~~~~~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGri 73 (341)
T PLN02776 26 IDLPGLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRI 73 (341)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCC
Confidence 4443333 33344455566689999999999998765 4556655653
No 89
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=86.51 E-value=20 Score=34.75 Aligned_cols=35 Identities=11% Similarity=0.012 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhhccChHhhHHCCCc-ccceecCh
Q 017282 259 LYSIAGLGIAIVNDFKSVEGDRAMGLQ-SLPVAFGP 293 (374)
Q Consensus 259 ~~~l~~~~~~~~~d~~D~e~D~~aG~~-TLpv~~G~ 293 (374)
..++...+-..+||+-|+|-|+++-+. .=|..-|+
T Consensus 45 ~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPLpsG~ 80 (286)
T PRK12895 45 AAVSARTSAMSINRIEGLRYDMINPRKKDWALVSGR 80 (286)
T ss_pred HHHHHHHHHHHHHhHHHhcccCCCCcCCCCCCCCCC
Confidence 334444556789999999999887432 33444443
No 90
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=86.42 E-value=19 Score=35.16 Aligned_cols=47 Identities=13% Similarity=0.123 Sum_probs=28.5
Q ss_pred CCCCHHHHH-HHHHHHHHHHHHHHHhhccChHhhHHCCC-cccceecCh
Q 017282 247 GTLTPDIIV-LTLLYSIAGLGIAIVNDFKSVEGDRAMGL-QSLPVAFGP 293 (374)
Q Consensus 247 g~~~~~~~l-l~~~~~l~~~~~~~~~d~~D~e~D~~aG~-~TLpv~~G~ 293 (374)
|..++..++ ..+..++...+-..+||+-|+|-|+++-+ +.=|..-|+
T Consensus 44 ~~~~~~~l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT~~RPl~sG~ 92 (300)
T PRK13106 44 GIPPISTLILIFLALFFLRTAGMTNDNLADLEIDAKNPRTKNRPLVTGA 92 (300)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhhHHhccccCCCccCCCCCCCCC
Confidence 334443332 33344455556678999999999998742 334555564
No 91
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=86.05 E-value=23 Score=33.89 Aligned_cols=45 Identities=20% Similarity=0.096 Sum_probs=28.1
Q ss_pred CCHHHH-HHHHHHHHHHHHHHHHhhccChHhhHHCCC-cccceecCh
Q 017282 249 LTPDII-VLTLLYSIAGLGIAIVNDFKSVEGDRAMGL-QSLPVAFGP 293 (374)
Q Consensus 249 ~~~~~~-ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~-~TLpv~~G~ 293 (374)
.++..+ +..+..++...+-...||+-|+|-|+++.+ +.=|..-|+
T Consensus 33 ~~~~~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~ 79 (279)
T PRK12869 33 VSWLPLIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVGL 79 (279)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCcCCCC
Confidence 444333 233344455666789999999999998654 334444444
No 92
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=85.98 E-value=7.4 Score=37.67 Aligned_cols=33 Identities=15% Similarity=0.011 Sum_probs=24.8
Q ss_pred HHHHHHHHhhhhcccccccccccC-CCCCccccc
Q 017282 131 GPCLTGYTQTINDWYDREIDAINE-PYRPIPSGA 163 (374)
Q Consensus 131 g~l~~~a~~~iNd~~D~~~D~~n~-~~Rpl~sG~ 163 (374)
..+.+.+-..+|++.|+|.|++.+ |.=|+.-|.
T Consensus 171 ~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~ 204 (291)
T PRK12886 171 VLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGV 204 (291)
T ss_pred HHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCc
Confidence 334466666789999999999877 777877664
No 93
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=85.68 E-value=9.4 Score=37.27 Aligned_cols=37 Identities=16% Similarity=-0.077 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHhhccChHhhHHCCC-cccceecCh
Q 017282 257 TLLYSIAGLGIAIVNDFKSVEGDRAMGL-QSLPVAFGP 293 (374)
Q Consensus 257 ~~~~~l~~~~~~~~~d~~D~e~D~~aG~-~TLpv~~G~ 293 (374)
.+.+++.-.+-...||+-|+|-|+++-+ +.=|..-|+
T Consensus 53 ~~a~~~~Rsag~~~Nd~~DrdiD~~~~RT~~RPLpsG~ 90 (300)
T PRK12876 53 GSAFFCARTVGIIVNQIIDCAIDKKNPRTSSRVLPAKL 90 (300)
T ss_pred HHHHHHHHHHHHHHHhHHHhcccCCCCCCCCCCCCCCC
Confidence 3334444445578999999999998875 455665565
No 94
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=85.29 E-value=18 Score=35.02 Aligned_cols=35 Identities=26% Similarity=0.188 Sum_probs=24.3
Q ss_pred hCCCCHHHHHHHH-HHHHHHHHHHHHhhccChHh--hH
Q 017282 246 FGTLTPDIIVLTL-LYSIAGLGIAIVNDFKSVEG--DR 280 (374)
Q Consensus 246 ~g~~~~~~~ll~~-~~~l~~~~~~~~~d~~D~e~--D~ 280 (374)
.|++++...++++ ...+...+.+..||+.|.+. |+
T Consensus 29 ~~~f~~~~~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~ 66 (285)
T TIGR02235 29 GGVFHLDRFALFLIAAILILAWINLTNDVFDSDTGIDR 66 (285)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCc
Confidence 3578877665543 33456677899999999776 65
No 95
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=84.24 E-value=20 Score=34.84 Aligned_cols=35 Identities=17% Similarity=0.221 Sum_probs=19.8
Q ss_pred CCCCHHHHH-HHHHHHHHHHHHHHHhhccChHhhHH
Q 017282 247 GTLTPDIIV-LTLLYSIAGLGIAIVNDFKSVEGDRA 281 (374)
Q Consensus 247 g~~~~~~~l-l~~~~~l~~~~~~~~~d~~D~e~D~~ 281 (374)
|..++...+ .++...+..-+-..+||+-|+|-|+.
T Consensus 36 g~~~~~~~~l~~l~~~l~~~ag~~iND~~D~~~D~~ 71 (297)
T PRK12871 36 GGFSWELTIKAALIGLFGFEAGFVLNDYVDRKRDRL 71 (297)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCcc
Confidence 555664333 22222222222359999999999964
No 96
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=83.53 E-value=29 Score=33.53 Aligned_cols=20 Identities=20% Similarity=-0.016 Sum_probs=14.9
Q ss_pred HHhhccChHhhHHCCCcccc
Q 017282 269 IVNDFKSVEGDRAMGLQSLP 288 (374)
Q Consensus 269 ~~~d~~D~e~D~~aG~~TLp 288 (374)
-+||+-|.|.|....++.=+
T Consensus 52 ~~Ndy~D~~~d~dn~r~~g~ 71 (282)
T PRK13105 52 GINDVFDYESDLRNPRKGGV 71 (282)
T ss_pred hhhhhhhhhcCCCCcccCCC
Confidence 44999999998887665444
No 97
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=82.67 E-value=21 Score=34.26 Aligned_cols=32 Identities=19% Similarity=0.367 Sum_probs=20.0
Q ss_pred CCCCHHHHHHH-HHHHHHHHHHHHHhhccChHh
Q 017282 247 GTLTPDIIVLT-LLYSIAGLGIAIVNDFKSVEG 278 (374)
Q Consensus 247 g~~~~~~~ll~-~~~~l~~~~~~~~~d~~D~e~ 278 (374)
+.+++...+++ +...+...+....||+-|.|.
T Consensus 33 ~~~~~~~~ll~~l~~~l~~~~~n~~Ndy~D~~~ 65 (293)
T PRK06080 33 GSFHPLLALLALLAALLLQIATNLANDYGDYVK 65 (293)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHhHHHhcc
Confidence 55665444333 334455567789999999853
No 98
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=82.58 E-value=19 Score=35.13 Aligned_cols=35 Identities=17% Similarity=0.104 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHH-HHHHHHHHHHHHhhccChH--hhHH
Q 017282 247 GTLTPDIIVLTL-LYSIAGLGIAIVNDFKSVE--GDRA 281 (374)
Q Consensus 247 g~~~~~~~ll~~-~~~l~~~~~~~~~d~~D~e--~D~~ 281 (374)
+++++...++++ ...+...+.+..||+.|.+ -|++
T Consensus 43 ~~f~~~~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~ 80 (304)
T PRK07419 43 GVFRLDQFITFLLAAILILAWENLSNDVFDADTGIDKN 80 (304)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 567776655443 3445667789999999988 4553
No 99
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=82.19 E-value=24 Score=34.57 Aligned_cols=37 Identities=3% Similarity=0.012 Sum_probs=24.6
Q ss_pred hCCCCHHHHHHHHHH-HHHHHHHHHHhhccChHhhHHC
Q 017282 246 FGTLTPDIIVLTLLY-SIAGLGIAIVNDFKSVEGDRAM 282 (374)
Q Consensus 246 ~g~~~~~~~ll~~~~-~l~~~~~~~~~d~~D~e~D~~a 282 (374)
.+++++...++++.. .+...+....||+.|.+.|...
T Consensus 33 ~~~~~~~~~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~ 70 (317)
T PRK13387 33 AKIFDWLLFLAFMVAMLAFDIATTAINNYMDFKKALDT 70 (317)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCc
Confidence 346777655544433 4466778999999998776554
No 100
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=81.41 E-value=28 Score=33.60 Aligned_cols=32 Identities=13% Similarity=0.029 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHH-HHHHHHHHHHHHhhccChHh
Q 017282 247 GTLTPDIIVLTL-LYSIAGLGIAIVNDFKSVEG 278 (374)
Q Consensus 247 g~~~~~~~ll~~-~~~l~~~~~~~~~d~~D~e~ 278 (374)
+.+++...++++ ...+...+....||+-|.+.
T Consensus 23 ~~f~~~~~ll~~~~~~~~q~~~N~~NDy~D~~~ 55 (284)
T TIGR00751 23 HAFVWLVALLALATAVLLQILSNYANDYGDGIK 55 (284)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHhHHHHhc
Confidence 467776555444 33456677899999999844
No 101
>PLN02922 prenyltransferase
Probab=74.13 E-value=61 Score=31.81 Aligned_cols=32 Identities=13% Similarity=0.013 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHH-HHHHHHHHHHHHhhccChHh
Q 017282 247 GTLTPDIIVLTL-LYSIAGLGIAIVNDFKSVEG 278 (374)
Q Consensus 247 g~~~~~~~ll~~-~~~l~~~~~~~~~d~~D~e~ 278 (374)
|++++...++++ ...+...+....||+.|.+.
T Consensus 46 g~f~~~~~ll~ll~~~l~q~~~N~~NDy~D~~~ 78 (315)
T PLN02922 46 GLFDARRYGTLLLSSVLVITWLNLSNDAYDADT 78 (315)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHhhhhHhcc
Confidence 678877655444 34456677889999999766
No 102
>COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) [Signal transduction mechanisms]
Probab=57.46 E-value=1.4e+02 Score=26.48 Aligned_cols=119 Identities=12% Similarity=0.136 Sum_probs=57.3
Q ss_pred HHHhhhhcccccccccccCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccc---hhHHHHHHHHHHHhheec
Q 017282 136 GYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHD---FPTIFWLAVGGSLLSYIY 212 (374)
Q Consensus 136 ~a~~~iNd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~---~~~~~~l~l~~~~l~~~Y 212 (374)
.+++..++.-+...|...+|+ -.++..+.-..+..+.+...++.++.+..+.. .+..+.+.++-.++...|
T Consensus 21 ~gs~~~~~~~~~wy~~L~kP~------w~pp~~~f~~vWtvLy~l~~iSa~lvW~~~~~~~~~~~~~~ly~~ql~ln~aw 94 (161)
T COG3476 21 LGSFFISSRDPNWYNNLKKPF------WLPPEWAFPPVWTVLYALIGISAYLVWEKGPGQGTSWLLMFLYLLQLILNFAW 94 (161)
T ss_pred HHHHHhccccHHHHHhccCCC------CCChHHHhhHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHH
Confidence 344555555544444444432 12344555555555555556666666543221 122334444455667888
Q ss_pred CCCCcccccccc-hhhHHHHHHHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 017282 213 SAPPLKLKQNGW-IGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAG 264 (374)
Q Consensus 213 s~pP~~lK~~~~-~g~l~vg~~~g~lp~~~~~a~~g~~~~~~~ll~~~~~l~~ 264 (374)
| |+-+|-+.+ .|.+..+.. .+..+....+.-+.+..+-.+-+|+.+|.
T Consensus 95 s--piff~l~~l~~a~i~~lll--~~~vl~l~i~~~~~s~~As~LLiPYllW~ 143 (161)
T COG3476 95 S--PIFFGLRSLGAALIIILLL--WIAVLVLTIIVWPISKTASLLLIPYLLWS 143 (161)
T ss_pred H--HHHHhhcCcchHHHHHHHH--HHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 8 333443322 244333322 22222222334456665656667888875
No 103
>PLN02878 homogentisate phytyltransferase
Probab=52.36 E-value=2.1e+02 Score=27.72 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=21.1
Q ss_pred HHhhccChHhhHHCCCcccceecCh
Q 017282 269 IVNDFKSVEGDRAMGLQSLPVAFGP 293 (374)
Q Consensus 269 ~~~d~~D~e~D~~aG~~TLpv~~G~ 293 (374)
=+||+-|+|-| |.+++..|+-=|+
T Consensus 41 glNd~~D~EID-kINkP~rPIpSG~ 64 (280)
T PLN02878 41 GLNQLYDIEID-KVNKPYLPLASGE 64 (280)
T ss_pred chhhhhhhccc-ccCCCCCCCCCCC
Confidence 37999999999 5789999998885
No 104
>KOG3146 consensus Dolichyl pyrophosphate phosphatase and related acid phosphatases [Lipid transport and metabolism]
Probab=45.78 E-value=94 Score=28.81 Aligned_cols=38 Identities=24% Similarity=0.102 Sum_probs=27.0
Q ss_pred heecCCCCcccccccchhhHHHHHHHhHHHHHHHHHHhCCC
Q 017282 209 SYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTL 249 (374)
Q Consensus 209 ~~~Ys~pP~~lK~~~~~g~l~vg~~~g~lp~~~~~a~~g~~ 249 (374)
.+.|+. ..+|++++ .++++|...|.+....|+...|.+
T Consensus 142 ~v~~sR--Vyl~yHt~-sQVv~G~ivG~l~g~~Wf~~v~sl 179 (228)
T KOG3146|consen 142 YVCYSR--VYLKYHTL-SQVVVGAIVGGLVGILWFYLVNSL 179 (228)
T ss_pred HHHHHH--HHHHhccH-HHHHHHHHhhhhHHHHHHHHHHHH
Confidence 456664 46899998 799999888876655565555554
No 105
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=40.69 E-value=3.6e+02 Score=26.42 Aligned_cols=52 Identities=23% Similarity=0.325 Sum_probs=32.6
Q ss_pred CCCCHHHHHHHHHH-HHHHHHHHHHhhccChHhhHHCCCcc-cceecChhhHHH
Q 017282 247 GTLTPDIIVLTLLY-SIAGLGIAIVNDFKSVEGDRAMGLQS-LPVAFGPETAKW 298 (374)
Q Consensus 247 g~~~~~~~ll~~~~-~l~~~~~~~~~d~~D~e~D~~aG~~T-Lpv~~G~~~a~~ 298 (374)
+..++..++..+.. ++-..+-...|++-|+|=|+++.+.. =|+.-|+=.-+.
T Consensus 47 ~~~~~~l~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~RP~~~G~i~p~~ 100 (304)
T COG0109 47 GSINPLLLLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRKRPLVTGLISPRE 100 (304)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccCCCCCCCccCHHH
Confidence 56666655554433 33445567899999999999886432 366666544333
No 106
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=38.81 E-value=15 Score=33.65 Aligned_cols=32 Identities=31% Similarity=0.495 Sum_probs=27.2
Q ss_pred HHHHHHHHHhhccChHhhH----------HCCCcccceecCh
Q 017282 262 IAGLGIAIVNDFKSVEGDR----------AMGLQSLPVAFGP 293 (374)
Q Consensus 262 l~~~~~~~~~d~~D~e~D~----------~aG~~TLpv~~G~ 293 (374)
-++.++.+.||++|+.+|. +.|+.|+|.....
T Consensus 157 ~lG~a~Qi~dd~~D~~~d~~~~gk~~~D~~~gr~tlp~~~~~ 198 (236)
T cd00867 157 ALGLAFQLTDDLLDVFGDAEELGKVGSDLREGRITLPVILAR 198 (236)
T ss_pred HHHHHHHHHHHhccccCChHHHCccHHHHHcCCchHHHHHHH
Confidence 3566789999999998887 8999999998873
No 107
>PRK10581 geranyltranstransferase; Provisional
Probab=33.29 E-value=28 Score=33.89 Aligned_cols=42 Identities=24% Similarity=0.371 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhhccChH-----------hhHHCCCcccceecChhhHHHHHH
Q 017282 260 YSIAGLGIAIVNDFKSVE-----------GDRAMGLQSLPVAFGPETAKWICV 301 (374)
Q Consensus 260 ~~l~~~~~~~~~d~~D~e-----------~D~~aG~~TLpv~~G~~~a~~l~~ 301 (374)
.-.++.++.+..|+.|+. .|.+.|+.|+|+.+|.+.+.....
T Consensus 212 g~~lG~aFQI~DDilD~~g~~~~~GK~~g~Dl~~gk~T~p~l~~~e~a~~~a~ 264 (299)
T PRK10581 212 AESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKAR 264 (299)
T ss_pred HHHHHHHHHHHHHHccccCChHHHCCCcchhhhcCCCCHHHHHHHHHHHHHHH
Confidence 334667889999999975 467789999999999887766443
No 108
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=31.78 E-value=78 Score=29.80 Aligned_cols=38 Identities=29% Similarity=0.378 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhhccChHh-----------hHHCCCcccceecChhhHHH
Q 017282 261 SIAGLGIAIVNDFKSVEG-----------DRAMGLQSLPVAFGPETAKW 298 (374)
Q Consensus 261 ~l~~~~~~~~~d~~D~e~-----------D~~aG~~TLpv~~G~~~a~~ 298 (374)
--++.++.+.+|+.|..+ |.+.|+.|+|+.++.+.+.-
T Consensus 176 ~~lG~afQi~DD~~d~~~~~~~~gK~~~~Dl~~gk~Tlp~~~al~~~~~ 224 (260)
T PF00348_consen 176 RHLGIAFQIRDDLLDLFGDEEELGKPVGSDLKEGKPTLPVLHALERARE 224 (260)
T ss_dssp HHHHHHHHHHHHHHHHHSHHHHHSSTTTHHHHTTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhccCcHHHhcccchhHHhcCcccHHHHHHHHhCHH
Confidence 345667788999988764 66788999999988776443
No 109
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=31.48 E-value=55 Score=32.13 Aligned_cols=37 Identities=32% Similarity=0.441 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhccChHhh-----------HHCCCcccceecChhhHHH
Q 017282 262 IAGLGIAIVNDFKSVEGD-----------RAMGLQSLPVAFGPETAKW 298 (374)
Q Consensus 262 l~~~~~~~~~d~~D~e~D-----------~~aG~~TLpv~~G~~~a~~ 298 (374)
..++++.+..|+-|+.+| .+.|++|+|+.++.+.+..
T Consensus 205 ~lGlaFQi~DDiLD~~~d~~~lGK~~g~Dl~~gK~T~p~l~~l~~~~~ 252 (322)
T COG0142 205 NLGLAFQIQDDILDITGDEEELGKPVGSDLKEGKPTLPVLLALEKANE 252 (322)
T ss_pred HhhHHHHHHHHhhcCCCChHHhCCCcchHHHcCCchHHHHHHHHcCch
Confidence 355678999999998874 5668899999999886544
No 110
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=30.05 E-value=81 Score=30.86 Aligned_cols=34 Identities=29% Similarity=0.470 Sum_probs=27.5
Q ss_pred HHHHHHHHHhhccChH-----------hhHHCCCcccceecChhh
Q 017282 262 IAGLGIAIVNDFKSVE-----------GDRAMGLQSLPVAFGPET 295 (374)
Q Consensus 262 l~~~~~~~~~d~~D~e-----------~D~~aG~~TLpv~~G~~~ 295 (374)
-+++++.+.+|+.|+. +|.+.|+.|+|+.+..+.
T Consensus 201 ~lG~aFQI~DDilD~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~ 245 (319)
T TIGR02748 201 YVGMSYQITDDILDFVGTEEELGKPAGGDLLQGNVTLPVLYAMED 245 (319)
T ss_pred HHHHHHHHHHHHHHccCCHHhhCCChhhHHhCCCchHHHHHHhcC
Confidence 4567789999998875 567889999999988653
No 111
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=28.51 E-value=6.2e+02 Score=25.61 Aligned_cols=17 Identities=24% Similarity=0.180 Sum_probs=11.4
Q ss_pred HHHHHHhhhhccccccc
Q 017282 133 CLTGYTQTINDWYDREI 149 (374)
Q Consensus 133 l~~~a~~~iNd~~D~~~ 149 (374)
++...-+.+|+.++.+.
T Consensus 116 ~~~~ie~a~N~Iw~v~~ 132 (412)
T PRK04214 116 LLHTIEQTFNRIWRVNS 132 (412)
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 34555668899887653
No 112
>PF09946 DUF2178: Predicted membrane protein (DUF2178); InterPro: IPR019235 This entry, found in various hypothetical bacterial and archaeal proteins, has no known function, but contains several predicted transmembrane helices.
Probab=27.47 E-value=3.5e+02 Score=22.23 Aligned_cols=15 Identities=20% Similarity=0.417 Sum_probs=6.6
Q ss_pred HHHHHHHHHHhhhhH
Q 017282 306 ITQISVAGYLLGAGK 320 (374)
Q Consensus 306 l~~l~l~~~~~~~~~ 320 (374)
+....+.+|....+.
T Consensus 12 ~~~~~l~~~~~~~g~ 26 (111)
T PF09946_consen 12 IAVGGLFGWAVSSGN 26 (111)
T ss_pred HHHHHHHHHHHhcCC
Confidence 333344555544343
No 113
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=26.08 E-value=74 Score=28.47 Aligned_cols=33 Identities=21% Similarity=0.137 Sum_probs=18.3
Q ss_pred HHHHHHHHHhheecCCCCcccccccchhhHHHHHHHhHH
Q 017282 199 FWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISL 237 (374)
Q Consensus 199 ~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg~~~g~l 237 (374)
+.+++++++.+++|.. -+||.. ....|+.+|..
T Consensus 75 ~~~gv~Si~aAllY~~---~l~k~~---g~W~Gi~YG~~ 107 (173)
T PF11085_consen 75 VFIGVFSIVAALLYYA---LLKKFK---GPWPGILYGLA 107 (173)
T ss_pred HHHHHHHHHHHHHHHH---HHHHhc---ccchHHHHHHH
Confidence 3445566667778875 355432 23445666643
No 114
>PF12046 DUF3529: Protein of unknown function (DUF3529); InterPro: IPR021919 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 176 to 190 amino acids in length.
Probab=24.95 E-value=1.9e+02 Score=25.91 Aligned_cols=58 Identities=10% Similarity=-0.056 Sum_probs=27.1
Q ss_pred CCCccccccCHHHHHH--HHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecC
Q 017282 156 YRPIPSGAISENEVIT--QIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYS 213 (374)
Q Consensus 156 ~Rpl~sG~is~~~a~~--~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys 213 (374)
+.....|.+.+..... +..+..+....+++.+.......+++.+.+.+++=+.+++|-
T Consensus 68 ~~itFeG~V~pS~~lA~fLt~l~~~Gl~cl~LVL~~l~P~~g~~~~~L~lLsPlAG~~Yw 127 (173)
T PF12046_consen 68 EVITFEGFVAPSWFLAIFLTFLAAIGLACLGLVLSILFPDLGWWPLLLVLLSPLAGIFYW 127 (173)
T ss_pred cEEEEEEEecCcHhHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHhhhhhhhhh
Confidence 3445677775544333 222222222233444433322223444555666666677776
No 115
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=23.11 E-value=1.4e+02 Score=27.93 Aligned_cols=61 Identities=23% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChH-----------hhHHCCCcccceecC
Q 017282 232 ASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVE-----------GDRAMGLQSLPVAFG 292 (374)
Q Consensus 232 ~~~g~lp~~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e-----------~D~~aG~~TLpv~~G 292 (374)
..+...+...+....|.-+-..-.+.-..-.++.++.+.+|+.|+. +|.+.|+.|+|+.++
T Consensus 150 ~~l~~~~~~~~a~l~~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Di~~gk~T~~~~~~ 221 (259)
T cd00685 150 AALFAAAPLLGALLAGADEEEAEALKRFGRNLGLAFQIQDDILDLFGDPETLGKPVGSDLREGKCTLPVLLA 221 (259)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCChHHHCCCcchHHHcCCchHHHHHH
No 116
>PLN02601 beta-carotene hydroxylase
Probab=23.09 E-value=7e+02 Score=24.18 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=7.2
Q ss_pred HHHHHHHHHHhheecC
Q 017282 198 IFWLAVGGSLLSYIYS 213 (374)
Q Consensus 198 ~~~l~l~~~~l~~~Ys 213 (374)
++.+|+.-.+.+..|-
T Consensus 210 ~fgiGlGITlYGiaYf 225 (303)
T PLN02601 210 CFGAGLGITVFGMAYM 225 (303)
T ss_pred HHHHHHhHHHHHHHHH
Confidence 3434444344455554
No 117
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=22.64 E-value=2.3e+02 Score=27.63 Aligned_cols=78 Identities=19% Similarity=0.064 Sum_probs=45.3
Q ss_pred hhHHHHHhhhCccchHHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccc--cCC-CCC
Q 017282 82 NKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAI--NEP-YRP 158 (374)
Q Consensus 82 ~~l~~~l~L~RP~~~~~~~~~~~~G~~~~g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~--n~~-~Rp 158 (374)
.....|++..+-+|-.+...++.+|+..+|.-+-.. .. +.-.|--+-.+-++.||+.|+.-|.. .+| ..=
T Consensus 157 ~~~~~Y~~~i~~KTa~L~~~~~~~ga~~ag~~~~~~----~~---l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~~~D 229 (319)
T TIGR02748 157 QNLRTYLRRIKRKTALLIAASCQLGAIASGANEAIV----KK---LYWFGYYVGMSYQITDDILDFVGTEEELGKPAGGD 229 (319)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH----HH---HHHHHHHHHHHHHHHHHHHHccCCHHhhCCChhhH
Confidence 457889999988887777778888887665422100 00 11112223345668999999976543 232 223
Q ss_pred ccccccCH
Q 017282 159 IPSGAISE 166 (374)
Q Consensus 159 l~sG~is~ 166 (374)
+..|+.|.
T Consensus 230 l~~gk~Tl 237 (319)
T TIGR02748 230 LLQGNVTL 237 (319)
T ss_pred HhCCCchH
Confidence 45565553
No 118
>PRK02251 putative septation inhibitor protein; Reviewed
Probab=22.31 E-value=2e+02 Score=22.85 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=11.5
Q ss_pred CCcccccccchhhHHHHHHH
Q 017282 215 PPLKLKQNGWIGNFALGASY 234 (374)
Q Consensus 215 pP~~lK~~~~~g~l~vg~~~ 234 (374)
+.+++...+-+ |+.+|+.+
T Consensus 57 ~~~P~~~lG~W-N~~IGfg~ 75 (87)
T PRK02251 57 GSLPIPALGAW-NLVIGFGL 75 (87)
T ss_pred CCcCcccccch-hHHHHHHH
Confidence 44455555555 88887654
No 119
>CHL00151 preA prenyl transferase; Reviewed
Probab=21.83 E-value=1.4e+02 Score=29.34 Aligned_cols=34 Identities=26% Similarity=0.408 Sum_probs=26.9
Q ss_pred HHHHHHHHHhhccChHh-----------hHHCCCcccceecChhh
Q 017282 262 IAGLGIAIVNDFKSVEG-----------DRAMGLQSLPVAFGPET 295 (374)
Q Consensus 262 l~~~~~~~~~d~~D~e~-----------D~~aG~~TLpv~~G~~~ 295 (374)
-+++++.+.+|+.|+.+ |.+.|+.|+|+.++.+.
T Consensus 206 ~lG~aFQi~DDilD~~~~~~~~GK~~g~Dl~eGk~Tlp~l~al~~ 250 (323)
T CHL00151 206 HLGLAFQIIDDVLDITSSTESLGKPIGSDLKNGNLTAPVLFALTQ 250 (323)
T ss_pred HHHHHHHHHHHHhhcccChhhhCCCchhhHhcCchHHHHHHHHhc
Confidence 45677889999988754 67889999999988653
No 120
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=20.78 E-value=1.8e+02 Score=28.51 Aligned_cols=63 Identities=24% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChH-----------hhHHCCCcccceecChh
Q 017282 232 ASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVE-----------GDRAMGLQSLPVAFGPE 294 (374)
Q Consensus 232 ~~~g~lp~~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e-----------~D~~aG~~TLpv~~G~~ 294 (374)
..+-..+...+....|.-+...-.+.-..--+++++.+.+|+.|+. +|.+.|+.|+|+.+..+
T Consensus 175 a~L~~~~~~~ga~~ag~~~~~~~~l~~~G~~lG~aFQi~DDild~~~~~~~~GK~~g~Dl~~Gk~Tlp~l~al~ 248 (322)
T TIGR02749 175 ASLVAASSKAAAVLSDVPSQVANDLYEYGKHLGLAFQVVDDILDFTGSTEQLGKPAGSDLMKGNLTAPVLFALE 248 (322)
T ss_pred HHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHhhCCChhHHHhCCCchHHHHHHHh
No 121
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=20.64 E-value=3.8e+02 Score=22.47 Aligned_cols=33 Identities=21% Similarity=0.200 Sum_probs=21.5
Q ss_pred CccccccCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017282 158 PIPSGAISENEVITQIWVLLLAGLGLAGLLDVW 190 (374)
Q Consensus 158 pl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~ 190 (374)
|.+=+-+|..|....+.+..++++++++.+.+.
T Consensus 15 PvV~rGlT~~El~~~a~~~~~~g~~~gl~la~~ 47 (121)
T PF11990_consen 15 PVVFRGLTADELGLAAGVGFVAGLVVGLPLALL 47 (121)
T ss_pred CCeecCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334344788888877777777777776665443
No 122
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=20.52 E-value=72 Score=27.31 Aligned_cols=19 Identities=21% Similarity=0.197 Sum_probs=13.7
Q ss_pred CccccccccccchhhccCC
Q 017282 29 SPVSVSFSRRRLTVRAQEP 47 (374)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~ 47 (374)
+..+.|+-.|+.++|++.+
T Consensus 18 ~~~s~E~~a~le~Lr~~~e 36 (142)
T PF11712_consen 18 PRPSPELKARLERLRAEQE 36 (142)
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 3347889888888888743
No 123
>PF09933 DUF2165: Predicted small integral membrane protein (DUF2165); InterPro: IPR018681 This family of various hypothetical prokaryotic proteins has no known function.
Probab=20.44 E-value=6e+02 Score=22.43 Aligned_cols=44 Identities=20% Similarity=0.190 Sum_probs=23.7
Q ss_pred HHHhhhhccccccc-----------ccccCCCCCccccccCHHHHHHHHHHHHHHH
Q 017282 136 GYTQTINDWYDREI-----------DAINEPYRPIPSGAISENEVITQIWVLLLAG 180 (374)
Q Consensus 136 ~a~~~iNd~~D~~~-----------D~~n~~~Rpl~sG~is~~~a~~~~~~l~~l~ 180 (374)
..-.++|++.|++. |.. -|..|+-...++.+.....+..+.++.
T Consensus 18 ~~Lva~~NitDy~sN~~fV~hVlsMdt~-f~~~~l~~RAI~sp~l~~~ay~~II~~ 72 (160)
T PF09933_consen 18 ATLVAFNNITDYGSNFQFVRHVLSMDTT-FPDPPLMWRAITSPWLHHAAYILIIAW 72 (160)
T ss_pred HHHHHHhcccCcHHHHHHHHHHHHHHHh-cCCCCcccccCCCHHHHHHHHHHHHHH
Confidence 34457899999863 332 133344444455555555555544433
No 124
>TIGR01190 ccmB heme exporter protein CcmB. This model describes the cyt c biogenesis protein encoded by ccmB in bacteria. Bacterial c-type cytochromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome C.
Probab=20.23 E-value=5.7e+02 Score=23.57 Aligned_cols=43 Identities=16% Similarity=0.190 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhhccC--hHhhHHCCCcccceecChhhHHHHHHH
Q 017282 260 YSIAGLGIAIVNDFKS--VEGDRAMGLQSLPVAFGPETAKWICVG 302 (374)
Q Consensus 260 ~~l~~~~~~~~~d~~D--~e~D~~aG~~TLpv~~G~~~a~~l~~~ 302 (374)
..+..+...+.+|++| .|.-.-.+..--.+.+|+--+.|+...
T Consensus 56 a~ll~l~rlF~~d~e~g~Le~lll~p~~~~~i~l~K~la~wl~~~ 100 (211)
T TIGR01190 56 SSLLSLDRLFRDDFEDGSLDLLMLSPTPLELTVLAKVLAHWLVTG 100 (211)
T ss_pred HHHHHhhHHHHHHHhCCcHHHHHhCCCChHHHHHHHHHHHHHHHH
Confidence 3344555666666666 455555555656666666666665544
Done!