Query 017282
Match_columns 374
No_of_seqs 298 out of 1834
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 11:55:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017282.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017282hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lsn_A Geranyltranstransferase 53.6 18 0.00061 33.9 5.7 43 261-303 213-266 (304)
2 3p8l_A Geranyltranstransferase 49.8 20 0.00067 33.6 5.2 41 262-302 217-268 (302)
3 3llw_A Geranyltranstransferase 48.9 24 0.00082 33.2 5.7 43 260-302 219-270 (311)
4 3m0g_A Farnesyl diphosphate sy 47.2 23 0.00078 33.1 5.3 44 260-303 205-259 (297)
5 3pde_A Farnesyl-diphosphate sy 46.9 15 0.0005 34.7 3.9 41 262-302 216-267 (309)
6 3uca_A Geranyltranstransferase 45.7 20 0.00067 34.0 4.6 41 262-302 242-293 (324)
7 3ts7_A Geranyltranstransferase 45.5 19 0.00065 34.1 4.4 43 261-303 219-272 (324)
8 2h8o_A Geranyltranstransferase 43.9 27 0.00093 33.1 5.3 41 262-302 253-304 (335)
9 3lom_A Geranyltranstransferase 43.7 7.9 0.00027 36.6 1.5 43 261-303 220-273 (313)
10 4f62_A Geranyltranstransferase 43.3 19 0.00064 34.0 4.0 43 261-303 212-265 (317)
11 2j1p_A Geranylgeranyl pyrophos 39.8 24 0.00083 32.7 4.2 38 262-302 224-261 (293)
12 1rtr_A Geranyltranstransferase 37.1 35 0.0012 31.8 4.8 41 262-302 209-260 (301)
13 3p8r_A Geranyltranstransferase 35.9 9.3 0.00032 35.8 0.6 41 262-302 220-271 (302)
14 3npk_A Geranyltranstransferase 33.7 41 0.0014 31.3 4.6 41 261-301 205-254 (291)
15 1rqj_A Geranyltranstransferase 31.2 18 0.00062 33.7 1.8 40 262-301 214-264 (299)
16 3kra_B Geranyl diphosphate syn 27.4 1.4E+02 0.0048 27.2 7.1 51 256-306 65-115 (274)
17 3lk5_A Geranylgeranyl pyrophos 25.5 56 0.0019 31.5 4.2 35 262-296 248-293 (380)
18 3aqb_B Component B of hexapren 25.1 69 0.0024 30.0 4.7 36 261-296 201-247 (325)
19 1wy0_A Geranylgeranyl pyrophos 24.9 68 0.0023 30.3 4.6 35 261-295 208-253 (342)
20 3rmg_A Octaprenyl-diphosphate 24.6 90 0.0031 29.4 5.4 35 262-296 205-249 (334)
21 3pko_A Geranylgeranyl pyrophos 23.7 69 0.0024 30.2 4.3 35 262-296 215-260 (334)
22 2qis_A Farnesyl pyrophosphate 22.3 44 0.0015 32.1 2.7 35 262-296 255-299 (374)
23 3mzv_A Decaprenyl diphosphate 21.9 77 0.0026 30.0 4.3 35 261-295 210-255 (341)
24 3ipi_A Geranyltranstransferase 21.7 1.3E+02 0.0043 27.9 5.7 31 262-292 198-233 (295)
25 3nf2_A Putative polyprenyl syn 21.4 1E+02 0.0034 29.3 5.0 34 262-295 215-259 (352)
26 1wmw_A Geranylgeranyl diphosph 20.2 51 0.0018 31.0 2.6 37 259-295 200-246 (330)
No 1
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=53.58 E-value=18 Score=33.92 Aligned_cols=43 Identities=26% Similarity=0.330 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhhccChHh-----------hHHCCCcccceecChhhHHHHHHHH
Q 017282 261 SIAGLGIAIVNDFKSVEG-----------DRAMGLQSLPVAFGPETAKWICVGA 303 (374)
Q Consensus 261 ~l~~~~~~~~~d~~D~e~-----------D~~aG~~TLpv~~G~~~a~~l~~~~ 303 (374)
-.++.++.+.+|+.|+.+ |.+.|+.|+|+.+|.+.++....-.
T Consensus 213 ~~lGlaFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~ 266 (304)
T 3lsn_A 213 QAIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYALEL 266 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC------------CCHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCChHHhCCCcccHHhcCCccHHHHHHHHHHHHHHHHH
Confidence 345677899999999865 6678999999999999987765543
No 2
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=49.79 E-value=20 Score=33.64 Aligned_cols=41 Identities=24% Similarity=0.280 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhccChH-----------hhHHCCCcccceecChhhHHHHHHH
Q 017282 262 IAGLGIAIVNDFKSVE-----------GDRAMGLQSLPVAFGPETAKWICVG 302 (374)
Q Consensus 262 l~~~~~~~~~d~~D~e-----------~D~~aG~~TLpv~~G~~~a~~l~~~ 302 (374)
.++.++.+.+|+.|+. +|.+.|+.|+|+.+|.+.++....-
T Consensus 217 ~lGlaFQI~DDilD~~~d~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~~~~ 268 (302)
T 3p8l_A 217 HYGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYPALLGIAGAKDALTH 268 (302)
T ss_dssp HHHHHHHHHHHHHHTTC-----------------CCHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHhCCChhhHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 4566788999998874 5788899999999999998876554
No 3
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=48.90 E-value=24 Score=33.18 Aligned_cols=43 Identities=21% Similarity=0.173 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhhccChHhhH---------HCCCcccceecChhhHHHHHHH
Q 017282 260 YSIAGLGIAIVNDFKSVEGDR---------AMGLQSLPVAFGPETAKWICVG 302 (374)
Q Consensus 260 ~~l~~~~~~~~~d~~D~e~D~---------~aG~~TLpv~~G~~~a~~l~~~ 302 (374)
.-.++.++.+.+|+.|..+|. +.||.|+|+.+|.+.++....-
T Consensus 219 g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~~~gK~T~p~l~~l~~a~~~~~~ 270 (311)
T 3llw_A 219 GLKMGLCFQVLDDIIDVTQDEEESGKTTHLDSAKNSFVNLLGLERANNYAQT 270 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHC-------------CCSCHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCChHHHCcccccccCcchHHHHHHHHHHHHHHHH
Confidence 334667789999999998775 5799999999999988765544
No 4
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=47.21 E-value=23 Score=33.06 Aligned_cols=44 Identities=25% Similarity=0.282 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhhccChHh-----------hHHCCCcccceecChhhHHHHHHHH
Q 017282 260 YSIAGLGIAIVNDFKSVEG-----------DRAMGLQSLPVAFGPETAKWICVGA 303 (374)
Q Consensus 260 ~~l~~~~~~~~~d~~D~e~-----------D~~aG~~TLpv~~G~~~a~~l~~~~ 303 (374)
.-.++.++.+.+|+.|+.+ |.+.|+.|+|+.+|.+.++....-.
T Consensus 205 g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~ 259 (297)
T 3m0g_A 205 ATALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKSRAADL 259 (297)
T ss_dssp HHHHHHHHHHHTTCC---------------------CCHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHH
Confidence 3346677899999999865 6678999999999999887765543
No 5
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=46.95 E-value=15 Score=34.66 Aligned_cols=41 Identities=22% Similarity=0.234 Sum_probs=31.7
Q ss_pred HHHHHHHHHhhccChH-----------hhHHCCCcccceecChhhHHHHHHH
Q 017282 262 IAGLGIAIVNDFKSVE-----------GDRAMGLQSLPVAFGPETAKWICVG 302 (374)
Q Consensus 262 l~~~~~~~~~d~~D~e-----------~D~~aG~~TLpv~~G~~~a~~l~~~ 302 (374)
.++.++.+.+|+.|.. .|.+.|+.|+|+.+|.++++....-
T Consensus 216 ~lGlaFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~~~~ 267 (309)
T 3pde_A 216 AFGLAFQIYDDILDVVSSPAEMGKATQKDADEAKNTYPGKLGLIGANQALID 267 (309)
T ss_dssp HHHHHHHHHHHHHHHHCC-----------CTTTSSSHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHhHHHHHH
Confidence 4566788999998874 5778899999999999988765443
No 6
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=45.72 E-value=20 Score=34.02 Aligned_cols=41 Identities=29% Similarity=0.384 Sum_probs=26.5
Q ss_pred HHHHHHHHHhhccChH-----------hhHHCCCcccceecChhhHHHHHHH
Q 017282 262 IAGLGIAIVNDFKSVE-----------GDRAMGLQSLPVAFGPETAKWICVG 302 (374)
Q Consensus 262 l~~~~~~~~~d~~D~e-----------~D~~aG~~TLpv~~G~~~a~~l~~~ 302 (374)
.++.++.+.+|+.|+. .|.+.|+.|+|+.+|.+.++....-
T Consensus 242 ~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~a~~ 293 (324)
T 3uca_A 242 KLGLAFQIKDDILDVVGNAKDLGKNVHKDQESNKNNYITIFGLEECKKKCVN 293 (324)
T ss_dssp HHHHHHHHHHHHHHHCCC-----------------CHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHhCCCcchHhhcCCccHHHHHHHHHHHHHHHH
Confidence 4567788999998874 4778899999999999988776554
No 7
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=45.49 E-value=19 Score=34.12 Aligned_cols=43 Identities=26% Similarity=0.281 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhhccChHh-----------hHHCCCcccceecChhhHHHHHHHH
Q 017282 261 SIAGLGIAIVNDFKSVEG-----------DRAMGLQSLPVAFGPETAKWICVGA 303 (374)
Q Consensus 261 ~l~~~~~~~~~d~~D~e~-----------D~~aG~~TLpv~~G~~~a~~l~~~~ 303 (374)
-.+++++.+.+|+.|+.+ |.+.|+.|+|+.+|.+.++....-.
T Consensus 219 ~~lGlAFQI~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~ 272 (324)
T 3ts7_A 219 KCIGLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALLGLSGAKEKAEEM 272 (324)
T ss_dssp HHHHHHHHHHHHHHHHTCC---------------CCCHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHH
Confidence 345677889999988754 6788999999999999888765543
No 8
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=43.86 E-value=27 Score=33.14 Aligned_cols=41 Identities=22% Similarity=0.217 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhccChHh-----------hHHCCCcccceecChhhHHHHHHH
Q 017282 262 IAGLGIAIVNDFKSVEG-----------DRAMGLQSLPVAFGPETAKWICVG 302 (374)
Q Consensus 262 l~~~~~~~~~d~~D~e~-----------D~~aG~~TLpv~~G~~~a~~l~~~ 302 (374)
-+++++.+.+|+.|+.+ |.+.|+.|+|+.+|.+.++....-
T Consensus 253 ~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~~le~a~~~a~~ 304 (335)
T 2h8o_A 253 KIGLSFQLADDLLDLTADAATMGKATGKDAARGKGTLVALRGEAWAREKLQE 304 (335)
T ss_dssp HHHHHHHHHHHHHHHC-----------------CCCHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHhCCCcchHHhcCCccHHHHHHHHHHHHHHHH
Confidence 45677889999988754 667899999999998877665543
No 9
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=43.72 E-value=7.9 Score=36.57 Aligned_cols=43 Identities=14% Similarity=0.146 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhhccChHh-----------hHHCCCcccceecChhhHHHHHHHH
Q 017282 261 SIAGLGIAIVNDFKSVEG-----------DRAMGLQSLPVAFGPETAKWICVGA 303 (374)
Q Consensus 261 ~l~~~~~~~~~d~~D~e~-----------D~~aG~~TLpv~~G~~~a~~l~~~~ 303 (374)
--+++++.+.+|+.|+.+ |.+.|+.|+|+.+|.+.++....-.
T Consensus 220 ~~lGlaFQI~DDilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~a~~~ 273 (313)
T 3lom_A 220 KHIGLVFQMQDDYLDLYAPTQILGKGRSSDQANQKTTFATLFNKQQLEEEIAVH 273 (313)
T ss_dssp HHHHHHHHHHHHHHHHHCC---------------CCCHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCHHhhCCCCcchhhcCCccHHHHHHHHHHHHHHHHH
Confidence 345677889999988754 6688999999999999987765543
No 10
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=43.30 E-value=19 Score=34.04 Aligned_cols=43 Identities=21% Similarity=0.325 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhhccChH-----------hhHHCCCcccceecChhhHHHHHHHH
Q 017282 261 SIAGLGIAIVNDFKSVE-----------GDRAMGLQSLPVAFGPETAKWICVGA 303 (374)
Q Consensus 261 ~l~~~~~~~~~d~~D~e-----------~D~~aG~~TLpv~~G~~~a~~l~~~~ 303 (374)
-.++.++.+.+|+.|+. .|.+.|+.|+|+.+|.+.++....-.
T Consensus 212 ~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~ 265 (317)
T 4f62_A 212 HAIGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATYPKLLGLDGAKALVVRL 265 (317)
T ss_dssp HHHHHHHHHHHHHHHTC----------------CCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCChHhhCCCcchHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 34567788999998874 46778999999999999988766543
No 11
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=39.84 E-value=24 Score=32.74 Aligned_cols=38 Identities=21% Similarity=0.269 Sum_probs=29.7
Q ss_pred HHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHH
Q 017282 262 IAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVG 302 (374)
Q Consensus 262 l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~ 302 (374)
-++.++.+.+|+.|+.+|. +.|+|+.+|.+.++....-
T Consensus 224 ~lG~aFQI~DDiLD~~~~~---K~T~p~l~gle~a~~~a~~ 261 (293)
T 2j1p_A 224 CIGLLFQVVDDILDVTKSS---KLTYPKLMGLEKSREFAEK 261 (293)
T ss_dssp HHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCc---cccHHHHHHHHHHHHHHHH
Confidence 4567789999999999998 8999999998877765443
No 12
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=37.07 E-value=35 Score=31.77 Aligned_cols=41 Identities=17% Similarity=0.112 Sum_probs=27.6
Q ss_pred HHHHHHHHHhhccChHh-----------hHHCCCcccceecChhhHHHHHHH
Q 017282 262 IAGLGIAIVNDFKSVEG-----------DRAMGLQSLPVAFGPETAKWICVG 302 (374)
Q Consensus 262 l~~~~~~~~~d~~D~e~-----------D~~aG~~TLpv~~G~~~a~~l~~~ 302 (374)
-++.++.+.+|+.|+.+ |.+.|+.|+|+.+|.+.++....-
T Consensus 209 ~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~~gK~T~p~l~al~~a~~~a~~ 260 (301)
T 1rtr_A 209 HLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAEDKLTY 260 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-------------CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHhCCCcchHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 45677899999998865 566789999999998877665543
No 13
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=35.91 E-value=9.3 Score=35.84 Aligned_cols=41 Identities=20% Similarity=0.332 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhccChHh-----------hHHCCCcccceecChhhHHHHHHH
Q 017282 262 IAGLGIAIVNDFKSVEG-----------DRAMGLQSLPVAFGPETAKWICVG 302 (374)
Q Consensus 262 l~~~~~~~~~d~~D~e~-----------D~~aG~~TLpv~~G~~~a~~l~~~ 302 (374)
.++.++.+.+|+.|+.+ |.+.|+.|+|+.+|.+.++....-
T Consensus 220 ~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~ 271 (302)
T 3p8r_A 220 AVGLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLEGAQQKAHT 271 (302)
T ss_dssp HHHHHHHHHHHHHHHTTC---------------CCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHhCCCcchHHhcCCchHHHHHHHHHHHHHHHH
Confidence 35567788999988754 667899999999999888776554
No 14
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=33.72 E-value=41 Score=31.25 Aligned_cols=41 Identities=22% Similarity=0.113 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhhccChHhhH---------HCCCcccceecChhhHHHHHH
Q 017282 261 SIAGLGIAIVNDFKSVEGDR---------AMGLQSLPVAFGPETAKWICV 301 (374)
Q Consensus 261 ~l~~~~~~~~~d~~D~e~D~---------~aG~~TLpv~~G~~~a~~l~~ 301 (374)
--++.++.+.+|+.|+.+|. ..||.|+|+.+|.+.++....
T Consensus 205 ~~lGlaFQI~DDiLD~~gd~~~~GK~~~~d~gK~T~p~l~~l~~a~~~~~ 254 (291)
T 3npk_A 205 LKLGLIFQINDDIIDVTTSQEQSGKPTNNDIHKNSFVNLLGLEQAIKTKE 254 (291)
T ss_dssp HHHHHHHHHHHHHHHHC----------------CCHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCChHHHCCccchhcCcchHHHHHHHHHhHHHHH
Confidence 34567789999999988764 368899999999998876444
No 15
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=31.22 E-value=18 Score=33.70 Aligned_cols=40 Identities=28% Similarity=0.457 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhccChHh-----------hHHCCCcccceecChhhHHHHHH
Q 017282 262 IAGLGIAIVNDFKSVEG-----------DRAMGLQSLPVAFGPETAKWICV 301 (374)
Q Consensus 262 l~~~~~~~~~d~~D~e~-----------D~~aG~~TLpv~~G~~~a~~l~~ 301 (374)
-++.++.+.+|+.|+.+ |.+.|+.|+|+.+|.+.++....
T Consensus 214 ~lG~aFQi~DD~lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~ 264 (299)
T 1rqj_A 214 SIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKAR 264 (299)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHHTCCCHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHhCCChhhHHHcCCCcHHHHHHHHHHHHHHH
Confidence 45667889999988764 56778999999999887765443
No 16
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=27.40 E-value=1.4e+02 Score=27.22 Aligned_cols=51 Identities=10% Similarity=0.214 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHH
Q 017282 256 LTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDI 306 (374)
Q Consensus 256 l~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l 306 (374)
++..+=+.-.+..+-.|+.+.++|.+.|++|.=..+|...+....-+++..
T Consensus 65 ~A~aiEliH~aSLIHDDI~~dD~d~RRG~pt~h~~~G~~~AIlaGD~Ll~~ 115 (274)
T 3kra_B 65 AAAAIHLVHAAAYVHEHLPLTDGSRPVSKPAIQHKYGPNVELLTGDGIVPF 115 (274)
T ss_dssp HHHHHHHHHHHHHHHHTCCCSSSSSCCCSSCCCCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcccCCccCCCCCCchhhcChHHHHHHHHHHHHH
Confidence 333444444556788899845556679999999999998776554444333
No 17
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=25.52 E-value=56 Score=31.51 Aligned_cols=35 Identities=20% Similarity=0.275 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhccChH-----------hhHHCCCcccceecChhhH
Q 017282 262 IAGLGIAIVNDFKSVE-----------GDRAMGLQSLPVAFGPETA 296 (374)
Q Consensus 262 l~~~~~~~~~d~~D~e-----------~D~~aG~~TLpv~~G~~~a 296 (374)
-++.++.+.+|+.|+. +|.+.||.|+|+.++.+.+
T Consensus 248 ~lG~AFQI~DDiLd~~gd~~~~GK~~g~Dl~egK~T~p~i~al~~~ 293 (380)
T 3lk5_A 248 DIGIAFQLRDDLLGVFGDPAITGKPAGDDIREGKRTVLLALALQRA 293 (380)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCChhhhCCCchhhHhcCCchHHHHHHHHhC
Confidence 4567788999998875 4677899999999998765
No 18
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=25.08 E-value=69 Score=29.97 Aligned_cols=36 Identities=17% Similarity=0.250 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhhccChHh-----------hHHCCCcccceecChhhH
Q 017282 261 SIAGLGIAIVNDFKSVEG-----------DRAMGLQSLPVAFGPETA 296 (374)
Q Consensus 261 ~l~~~~~~~~~d~~D~e~-----------D~~aG~~TLpv~~G~~~a 296 (374)
-.++.++.+.+|+.|+.+ |.+.|+.|+|+.++.+.+
T Consensus 201 ~~lG~afQi~DD~ld~~~~~~~~GK~~g~Dl~~gk~T~p~i~al~~~ 247 (325)
T 3aqb_B 201 HCIGMSYQIIDDILDYTSDEATLGKPVGSDIRNGHITYPLMAAIANL 247 (325)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCChhhcCCccchHhhCCCccHHHHHHHHhC
Confidence 345667888999888754 667899999999997665
No 19
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=24.93 E-value=68 Score=30.26 Aligned_cols=35 Identities=26% Similarity=0.231 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhhccChH-----------hhHHCCCcccceecChhh
Q 017282 261 SIAGLGIAIVNDFKSVE-----------GDRAMGLQSLPVAFGPET 295 (374)
Q Consensus 261 ~l~~~~~~~~~d~~D~e-----------~D~~aG~~TLpv~~G~~~ 295 (374)
-.++.++.+.+|+.|+. +|.+.|+.|+|+.++.+.
T Consensus 208 ~~lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl~egK~Tlp~i~al~~ 253 (342)
T 1wy0_A 208 RNVGIAFQIWDDVLDLIADEKKLGKPVGSDIRKGKKTLIVAHFFEN 253 (342)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHTSCSCHHHHHTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCChhhhCCCchhHHhCCCCcHHHHHHHHh
Confidence 34567788999998875 566779999999998763
No 20
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=24.56 E-value=90 Score=29.39 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=28.2
Q ss_pred HHHHHHHHHhhccChH----------hhHHCCCcccceecChhhH
Q 017282 262 IAGLGIAIVNDFKSVE----------GDRAMGLQSLPVAFGPETA 296 (374)
Q Consensus 262 l~~~~~~~~~d~~D~e----------~D~~aG~~TLpv~~G~~~a 296 (374)
.++.++.+.+|+.|+. +|.+.|+.|+|+.+..+.+
T Consensus 205 ~lG~aFQi~DD~ld~~~~~~~GK~~g~Dl~egK~T~p~i~al~~~ 249 (334)
T 3rmg_A 205 YIGICFQIKDDIFDYFDSKKIGKPTGNDMLEGKLTLPALYALNTT 249 (334)
T ss_dssp HHHHHHHHHHHHHTTSCC------CCHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCChhhcCCCchhhhhcCchHHHHHHHHHhC
Confidence 4566788999988874 7889999999999976654
No 21
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=23.68 E-value=69 Score=30.22 Aligned_cols=35 Identities=23% Similarity=0.342 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhccChH-----------hhHHCCCcccceecChhhH
Q 017282 262 IAGLGIAIVNDFKSVE-----------GDRAMGLQSLPVAFGPETA 296 (374)
Q Consensus 262 l~~~~~~~~~d~~D~e-----------~D~~aG~~TLpv~~G~~~a 296 (374)
.++.++.+.+|+.|+. +|.+.|+.|+|+.++.+.+
T Consensus 215 ~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~Tlp~i~al~~~ 260 (334)
T 3pko_A 215 AIGCAYQMLDDILDYAGDPKRTQKPVLEDLRSGVYSLPLLLSLSHA 260 (334)
T ss_dssp HHHHHHHHHHHHHHHCSCTTSCCHHHHHHHHTTCCCHHHHHHGGGS
T ss_pred HHHHHHHHHHHHHhccCChhhcCCCCCCccccCchhHHHHHHHHhC
Confidence 4566778889987764 4788999999999998754
No 22
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=22.29 E-value=44 Score=32.14 Aligned_cols=35 Identities=23% Similarity=0.079 Sum_probs=28.0
Q ss_pred HHHHHHHHHhhccChHh----------hHHCCCcccceecChhhH
Q 017282 262 IAGLGIAIVNDFKSVEG----------DRAMGLQSLPVAFGPETA 296 (374)
Q Consensus 262 l~~~~~~~~~d~~D~e~----------D~~aG~~TLpv~~G~~~a 296 (374)
-.+.++.+.+|+.|..+ |.+.|+.|+|+.++.+.+
T Consensus 255 ~lG~aFQI~DDiLD~~gd~~~~GK~g~Dl~~gK~T~p~l~al~~a 299 (374)
T 2qis_A 255 EMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRA 299 (374)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHCSCCCTTTTTCCCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHccCChhhcCCchhHHHcCCccHHHHHHHHhC
Confidence 45677899999988865 556899999999997653
No 23
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=21.93 E-value=77 Score=29.98 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhhccChHh-----------hHHCCCcccceecChhh
Q 017282 261 SIAGLGIAIVNDFKSVEG-----------DRAMGLQSLPVAFGPET 295 (374)
Q Consensus 261 ~l~~~~~~~~~d~~D~e~-----------D~~aG~~TLpv~~G~~~ 295 (374)
-.++.++.+.+|+.|+.+ |.+.|+.|+|+.++.+.
T Consensus 210 ~~lG~aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK~Tlp~i~al~~ 255 (341)
T 3mzv_A 210 DALGIAFQIVDDLLDYGGKSAEIGKNTGDDFRERKLTMPVIKAVAL 255 (341)
T ss_dssp HHHHHHHHHHHHHHHC----------CCHHHHTTCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhccCChhhcCCCCCcccccCchhHHHHHHHHh
Confidence 345677889999988754 67889999999998654
No 24
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=21.68 E-value=1.3e+02 Score=27.86 Aligned_cols=31 Identities=19% Similarity=0.231 Sum_probs=21.9
Q ss_pred HHHHHHHHHhhccChHhh-----HHCCCcccceecC
Q 017282 262 IAGLGIAIVNDFKSVEGD-----RAMGLQSLPVAFG 292 (374)
Q Consensus 262 l~~~~~~~~~d~~D~e~D-----~~aG~~TLpv~~G 292 (374)
..++++.+.+|+.|+.+| ...|+.|+|+.++
T Consensus 198 ~lGlaFQI~DDilD~~~~~~gkd~~~gk~Tlp~l~a 233 (295)
T 3ipi_A 198 ALGTAYQIVDDILEFLEVVEGKESKFTSETLPHIYM 233 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-------CCHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCccCCCcccCcccHHHHHH
Confidence 456778999999998875 4568889999998
No 25
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=21.39 E-value=1e+02 Score=29.32 Aligned_cols=34 Identities=26% Similarity=0.302 Sum_probs=27.4
Q ss_pred HHHHHHHHHhhccChH-----------hhHHCCCcccceecChhh
Q 017282 262 IAGLGIAIVNDFKSVE-----------GDRAMGLQSLPVAFGPET 295 (374)
Q Consensus 262 l~~~~~~~~~d~~D~e-----------~D~~aG~~TLpv~~G~~~ 295 (374)
-++.++.+.+|+.|+. +|.+.|+.|+|+.++.+.
T Consensus 215 ~lG~aFQi~DD~ld~~gd~~~~GK~~g~Dl~egK~Tlpvi~al~~ 259 (352)
T 3nf2_A 215 HLGLAFQAVDDLLGIWGDPDATGKQTWSDLRQRKKSLPVVAALAA 259 (352)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHSSCTTHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCChhhhCCCcCcccccCCccHHHHHHHHh
Confidence 4566788999998874 567789999999998765
No 26
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=20.20 E-value=51 Score=30.96 Aligned_cols=37 Identities=27% Similarity=0.167 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhhccChH----------hhHHCCCcccceecChhh
Q 017282 259 LYSIAGLGIAIVNDFKSVE----------GDRAMGLQSLPVAFGPET 295 (374)
Q Consensus 259 ~~~l~~~~~~~~~d~~D~e----------~D~~aG~~TLpv~~G~~~ 295 (374)
..-.++.++.+.+|+.|+. +|.+.|+.|+|+.++.+.
T Consensus 200 ~g~~lG~aFQi~DD~ld~~~d~~~GK~~g~Dl~egK~T~p~i~al~~ 246 (330)
T 1wmw_A 200 GGLRLGTAFQIVDDVLNLEGGEAYGKERAGDLYEGKRTLILLRFLEE 246 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHSCSCCCSSSTTHHHHHTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCcccCCcccCCCcCchhhCCCCCHHHHHHHHh
Confidence 3344667788999998875 578889999999998754
Done!