Query 017282
Match_columns 374
No_of_seqs 298 out of 1834
Neff 7.2
Searched_HMMs 13730
Date Mon Mar 25 11:55:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017282.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017282hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rtra_ a.128.1.1 (A:) Farnesy 77.1 2.7 0.0002 36.8 7.5 37 262-298 208-255 (290)
2 d1rqja_ a.128.1.1 (A:) Farnesy 45.0 5.5 0.0004 34.9 2.9 39 261-299 213-262 (299)
3 d1v4ea_ a.128.1.1 (A:) Octopre 29.7 37 0.0027 28.8 5.9 58 246-304 48-105 (280)
4 d1rqja_ a.128.1.1 (A:) Farnesy 26.1 53 0.0039 28.0 6.3 53 255-307 68-121 (299)
5 d1rtra_ a.128.1.1 (A:) Farnesy 20.4 70 0.0051 27.0 5.8 49 256-304 66-115 (290)
6 d1fpsa_ a.128.1.1 (A:) Farnesy 19.0 36 0.0026 29.8 3.6 33 262-294 229-271 (348)
7 d2q80a1 a.128.1.1 (A:6-296) Ge 15.4 18 0.0013 31.1 0.5 29 263-291 175-214 (291)
8 d1ezfa_ a.128.1.2 (A:) Squalen 9.0 70 0.0051 27.8 2.3 27 263-289 170-196 (333)
9 d1fpsa_ a.128.1.1 (A:) Farnesy 8.8 4.3E+02 0.031 22.1 7.9 80 83-168 184-266 (348)
10 d1v4ea_ a.128.1.1 (A:) Octopre 7.4 4.2E+02 0.031 21.5 6.9 77 82-168 146-224 (280)
No 1
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=77.07 E-value=2.7 Score=36.81 Aligned_cols=37 Identities=16% Similarity=0.136 Sum_probs=23.7
Q ss_pred HHHHHHHHHhhccChH-----------hhHHCCCcccceecChhhHHH
Q 017282 262 IAGLGIAIVNDFKSVE-----------GDRAMGLQSLPVAFGPETAKW 298 (374)
Q Consensus 262 l~~~~~~~~~d~~D~e-----------~D~~aG~~TLpv~~G~~~a~~ 298 (374)
-++.++.+.+|+.|.. .|.+.|+.|+|+.+|.+.+..
T Consensus 208 ~lG~aFQi~DD~lD~~g~~~~~GK~~g~Di~~gK~T~p~i~a~~~a~~ 255 (290)
T d1rtra_ 208 HLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAED 255 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-------------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchHhhccCcccHhhcCCccHHHHHHHHHHHH
Confidence 3566788999998875 466779999999998877643
No 2
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=45.01 E-value=5.5 Score=34.89 Aligned_cols=39 Identities=26% Similarity=0.431 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhhccChH-----------hhHHCCCcccceecChhhHHHH
Q 017282 261 SIAGLGIAIVNDFKSVE-----------GDRAMGLQSLPVAFGPETAKWI 299 (374)
Q Consensus 261 ~l~~~~~~~~~d~~D~e-----------~D~~aG~~TLpv~~G~~~a~~l 299 (374)
.-++.++.+.+|+.|+. .|.+.|+.|+|+.+|.+.+...
T Consensus 213 ~~lGiaFQi~DD~lD~~~~~~~~GK~~g~Dl~egK~Tlp~i~~le~a~~~ 262 (299)
T d1rqja_ 213 ESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKK 262 (299)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHHTCCCHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccchhhcCCchhhHHHCCChhHHHHHHHHHHHHH
Confidence 34567788999998875 3777899999999999876553
No 3
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]}
Probab=29.71 E-value=37 Score=28.81 Aligned_cols=58 Identities=12% Similarity=0.052 Sum_probs=39.4
Q ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHH
Q 017282 246 FGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAI 304 (374)
Q Consensus 246 ~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~ 304 (374)
.+..+...+-.+..+=++-.+..+..|+.| ++|.+.|++|.-..+|...+....-+++
T Consensus 48 g~~~~~~~~~~AaaiEliH~asLIhDDi~D-~s~~RRG~pt~h~~~g~~~ail~gd~l~ 105 (280)
T d1v4ea_ 48 GVEIGEDAISSLAALELVHLASLLHDDVID-GARFRRGKETINFMYGDKAAVAAGDLVL 105 (280)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-TCSEETTEECHHHHHCHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHhhhHhh-hcccccccchhhhccchhhhhhhHHHHH
Confidence 344444444444444455556677788887 6678999999999999988766554443
No 4
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=26.09 E-value=53 Score=27.98 Aligned_cols=53 Identities=17% Similarity=0.129 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHhhccChHh-hHHCCCcccceecChhhHHHHHHHHHHHH
Q 017282 255 VLTLLYSIAGLGIAIVNDFKSVEG-DRAMGLQSLPVAFGPETAKWICVGAIDIT 307 (374)
Q Consensus 255 ll~~~~~l~~~~~~~~~d~~D~e~-D~~aG~~TLpv~~G~~~a~~l~~~~~~l~ 307 (374)
-++..+=+.-.+..+..|+.|.+. |.+.|++|.-..+|...|....-+++..+
T Consensus 68 ~~A~aiEllH~asLiHDDI~d~d~~~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a 121 (299)
T d1rqja_ 68 APAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLA 121 (299)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccchhhhhhhcccccccceeeeCcchhhhhcchHHHHH
Confidence 344444455556677889998887 58999999999999998876655544333
No 5
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=20.36 E-value=70 Score=27.04 Aligned_cols=49 Identities=14% Similarity=0.091 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHhhccChHhh-HHCCCcccceecChhhHHHHHHHHH
Q 017282 256 LTLLYSIAGLGIAIVNDFKSVEGD-RAMGLQSLPVAFGPETAKWICVGAI 304 (374)
Q Consensus 256 l~~~~~l~~~~~~~~~d~~D~e~D-~~aG~~TLpv~~G~~~a~~l~~~~~ 304 (374)
++..+=+.-.+..+..|+.|+++| .+.|++|.-..+|...+....-+++
T Consensus 66 ~A~avEllH~asLIHDDI~d~D~~~~RRg~pt~~~~~g~~~Ail~Gd~l~ 115 (290)
T d1rtra_ 66 SAIALEMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALL 115 (290)
T ss_dssp HHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchhhhhhhhhhhcchhhHHHhhhhHHHHcCcchh
Confidence 344444555666788899988775 5889999999999988766554443
No 6
>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=18.95 E-value=36 Score=29.82 Aligned_cols=33 Identities=21% Similarity=0.056 Sum_probs=26.4
Q ss_pred HHHHHHHHHhhccChHh----------hHHCCCcccceecChh
Q 017282 262 IAGLGIAIVNDFKSVEG----------DRAMGLQSLPVAFGPE 294 (374)
Q Consensus 262 l~~~~~~~~~d~~D~e~----------D~~aG~~TLpv~~G~~ 294 (374)
-++.++.+.+|+.|+.+ |.+.|++|+|+.+..+
T Consensus 229 ~lGiaFQI~DDilD~~gd~~~~GK~g~Dl~egK~Tlpii~al~ 271 (348)
T d1fpsa_ 229 EMGEYFQIQDDYLDCFGDPALTGKVGTDIQDNKCSWLVVQCLQ 271 (348)
T ss_dssp HHHHHHHHHHHHHHHSCCSSCCSSCSCCCSSCCCCHHHHHHHH
T ss_pred ccchHHHHHHHHhhhhcchhccCcccccccCCccHHHHHHHHH
Confidence 45677899999988764 7778999999998664
No 7
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.41 E-value=18 Score=31.14 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=0.0
Q ss_pred HHHHHHHHhhccChH-----------hhHHCCCcccceec
Q 017282 263 AGLGIAIVNDFKSVE-----------GDRAMGLQSLPVAF 291 (374)
Q Consensus 263 ~~~~~~~~~d~~D~e-----------~D~~aG~~TLpv~~ 291 (374)
++.++.+.+|+.|+. .|.+.|+.|+|+.+
T Consensus 175 lG~afQi~DD~ld~~~~~~~~GK~~g~Dl~~gK~Tlpvi~ 214 (291)
T d2q80a1 175 LGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIH 214 (291)
T ss_dssp HHHHHHHHHHHHHHHCC------CTTHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHhhhhccchhhccccccchhccCCCcHHHHH
No 8
>d1ezfa_ a.128.1.2 (A:) Squalene synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.04 E-value=70 Score=27.77 Aligned_cols=27 Identities=22% Similarity=0.198 Sum_probs=23.4
Q ss_pred HHHHHHHHhhccChHhhHHCCCcccce
Q 017282 263 AGLGIAIVNDFKSVEGDRAMGLQSLPV 289 (374)
Q Consensus 263 ~~~~~~~~~d~~D~e~D~~aG~~TLpv 289 (374)
++.+..+.|=+||+.+|.+.|+.-+|.
T Consensus 170 lG~AlQltNIlRDi~eD~~~gR~YlP~ 196 (333)
T d1ezfa_ 170 MGLFLQKTNIIRDYLEDQQGGREFWPQ 196 (333)
T ss_dssp HHHHHHHHHHHHTHHHHHHHTCCCSCH
T ss_pred HHHHHHHHHHHHhhHHHHhCCcEECCH
Confidence 345678899999999999999999985
No 9
>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=8.81 E-value=4.3e+02 Score=22.12 Aligned_cols=80 Identities=14% Similarity=-0.097 Sum_probs=42.7
Q ss_pred hHHHHHhhhCccchHH-HHHHHHHHHHhhCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccC--CCCCc
Q 017282 83 KWKIRLQLTKPVTWPP-LIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRPI 159 (374)
Q Consensus 83 ~l~~~l~L~RP~~~~~-~~~~~~~G~~~~g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n~--~~Rpl 159 (374)
+...|++..+-++-.+ ...|...|.+..+.-+-. . ... +.-+ |--+-.+-++.||+.|+.-|.... ...-+
T Consensus 184 t~~~Y~~~i~~KTa~l~~~~~~~~~~~~~~~~~~~--~-~~~-l~~~--g~~lGiaFQI~DDilD~~gd~~~~GK~g~Dl 257 (348)
T d1fpsa_ 184 SEERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKE--E-HEN-AKAI--LLEMGEYFQIQDDYLDCFGDPALTGKVGTDI 257 (348)
T ss_dssp CHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCCHH--H-HHH-HHHH--HHHHHHHHHHHHHHHHHSCCSSCCSSCSCCC
T ss_pred CHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhcccc--c-hhh-cccc--ccccchHHHHHHHHhhhhcchhccCcccccc
Confidence 4677888888777765 345555555443332211 1 011 1111 122333566899999987665433 23346
Q ss_pred cccccCHHH
Q 017282 160 PSGAISENE 168 (374)
Q Consensus 160 ~sG~is~~~ 168 (374)
-.|+.|..-
T Consensus 258 ~egK~Tlpi 266 (348)
T d1fpsa_ 258 QDNKCSWLV 266 (348)
T ss_dssp SSCCCCHHH
T ss_pred cCCccHHHH
Confidence 667776543
No 10
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]}
Probab=7.38 E-value=4.2e+02 Score=21.47 Aligned_cols=77 Identities=13% Similarity=0.009 Sum_probs=48.0
Q ss_pred hhHHHHHhhhCccchHHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccC-C-CCCc
Q 017282 82 NKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE-P-YRPI 159 (374)
Q Consensus 82 ~~l~~~l~L~RP~~~~~~~~~~~~G~~~~g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n~-~-~Rpl 159 (374)
.+...|++..+-++-.+...|+.+|+..+|... +.+- -++. -+-.+-++.||+.|+.-|...+ | ..-+
T Consensus 146 ~t~~~y~~~i~~KT~~lf~~~~~~ga~l~g~~~---~~l~--~~g~-----~lG~afQi~DD~ld~~~~~~~GK~~g~Dl 215 (280)
T d1v4ea_ 146 ITKEEYLRIVEGKSGALFGLALQLPALLEGELG---EDLY--NLGV-----TIGTIYQMFDDIMDFAGMEKIGKDGFLDL 215 (280)
T ss_dssp CCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCC---HHHH--HHHH-----HHHHHHHHHHHHHHHTTCCSCCTTSSCCC
T ss_pred CCHHHHHHHHHhccccHHHHHHHHHHHHccccH---HHHH--HHHH-----HHHHHHHHHHhhccccchhhhcccchhhH
Confidence 456788888888888888888888887766432 1211 1111 1223456799999986554433 2 2356
Q ss_pred cccccCHHH
Q 017282 160 PSGAISENE 168 (374)
Q Consensus 160 ~sG~is~~~ 168 (374)
..|+.|..-
T Consensus 216 ~~gK~T~p~ 224 (280)
T d1v4ea_ 216 KNGVASFPL 224 (280)
T ss_dssp TTTTCCHHH
T ss_pred hCCCccHHH
Confidence 677777443
Done!