BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017284
(374 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XZW|A Chain A, Sweet Potato Purple Acid PhosphatasePHOSPHATE COMPLEX
pdb|1XZW|B Chain B, Sweet Potato Purple Acid PhosphatasePHOSPHATE COMPLEX
Length = 426
Score = 412 bits (1060), Expect = e-115, Method: Compositional matrix adjust.
Identities = 195/327 (59%), Positives = 253/327 (77%), Gaps = 4/327 (1%)
Query: 44 DIPLHNKVFDIPKGHNAPQQVRITQGDYDGKAVIISWVTP-NELGSNRVQYGKLEKKYDS 102
D+P + VF +P G+NAPQQV ITQGDY+G+ VIISW TP ++ G+N+V Y K
Sbjct: 8 DMPWDSDVFAVPSGYNAPQQVHITQGDYEGRGVIISWTTPYDKAGANKVFYWSENSKSQK 67
Query: 103 SAEGTVTNYTFYKYKSGYIHHCLVDDLEYDTKYYYKIGDGDSSREFWFQTPPKIHPDAPY 162
A GTV Y +Y Y S +IHHC + DLEYDTKYYY++G GD+ R+FWF TPPK PD PY
Sbjct: 68 RAMGTVVTYKYYNYTSAFIHHCTIKDLEYDTKYYYRLGFGDAKRQFWFVTPPKPGPDVPY 127
Query: 163 TFGIIGDLGQTYNSLSTLKHYMQSG--GQSVLFLGDLSYADRYEYNDVGIRWDSWGRFIE 220
FG+IGD+GQT++S +TL HY Q+ GQ+VLF+GDLSY++R+ +D RWD+WGRF E
Sbjct: 128 VFGLIGDIGQTHDSNTTLTHYEQNSAKGQAVLFMGDLSYSNRWPNHDNN-RWDTWGRFSE 186
Query: 221 QSAAYQPWIWSAGNHEIEFMPNMGEVIPFKSYLHRIATPYTASKSTNPLWYAIRRASAHI 280
+S AYQPWIW+AGNHEI++ P++GE PF + +R TP+ AS S +PLWYAI+RASAHI
Sbjct: 187 RSVAYQPWIWTAGNHEIDYAPDIGEYQPFVPFTNRYPTPHEASGSGDPLWYAIKRASAHI 246
Query: 281 IVLSSYSPYVKYTPQWWWLREELKKVDREKTPWLIVLMHVPLYSSNVVHYMEGESMRAVF 340
IVLSSYS +VKY+PQ+ W EL+KV+R +TPWLIVL+H PLY+S HYMEGE+MRA+F
Sbjct: 247 IVLSSYSGFVKYSPQYKWFTSELEKVNRSETPWLIVLVHAPLYNSYEAHYMEGEAMRAIF 306
Query: 341 ESWFVHSRVDFIFAGHVHAYERSVRMS 367
E +FV+ +VD +F+GHVH+YERS R+S
Sbjct: 307 EPYFVYYKVDIVFSGHVHSYERSERVS 333
>pdb|1KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
Length = 432
Score = 400 bits (1027), Expect = e-112, Method: Compositional matrix adjust.
Identities = 194/335 (57%), Positives = 252/335 (75%), Gaps = 3/335 (0%)
Query: 35 FIRTEWPSADIPLHNKVFDIPKGHNAPQQVRITQGDYDGKAVIISWVTPNELGSNRVQYG 94
F+R + D+PL + VF +P G+NAPQQV ITQGD G+A+IISWVT +E GS+ V+Y
Sbjct: 1 FVRKTNKNRDMPLDSDVFRVPPGYNAPQQVHITQGDLVGRAMIISWVTMDEPGSSAVRYW 60
Query: 95 KLEKKYDSSAEGTVTNYTFYKYKSGYIHHCLVDDLEYDTKYYYKIGDGDSSREFWFQTPP 154
+ A+G ++ Y F+ Y SG+IHH + L+Y+TKYYY++G +++R F F TPP
Sbjct: 61 SEKNGRKRIAKGKMSTYRFFNYSSGFIHHTTIRKLKYNTKYYYEVGLRNTTRRFSFITPP 120
Query: 155 KIHPDAPYTFGIIGDLGQTYNSLSTLKHYMQS--GGQSVLFLGDLSYADRYEYNDVGIRW 212
+ D PYTFG+IGDLGQ+++S +TL HY S GQ+VLF+GDLSYADRY +D +RW
Sbjct: 121 QTGLDVPYTFGLIGDLGQSFDSNTTLSHYELSPKKGQTVLFVGDLSYADRYPNHD-NVRW 179
Query: 213 DSWGRFIEQSAAYQPWIWSAGNHEIEFMPNMGEVIPFKSYLHRIATPYTASKSTNPLWYA 272
D+WGRF E+S AYQPWIW+AGNHEIEF P + E PFK + +R PY AS+ST+P WY+
Sbjct: 180 DTWGRFTERSVAYQPWIWTAGNHEIEFAPEINETEPFKPFSYRYHVPYEASQSTSPFWYS 239
Query: 273 IRRASAHIIVLSSYSPYVKYTPQWWWLREELKKVDREKTPWLIVLMHVPLYSSNVVHYME 332
I+RASAHIIVLSSYS Y + TPQ+ WL++EL+KV R +TPWLIVLMH PLY+S H+ME
Sbjct: 240 IKRASAHIIVLSSYSAYGRGTPQYTWLKKELRKVKRSETPWLIVLMHSPLYNSYNHHFME 299
Query: 333 GESMRAVFESWFVHSRVDFIFAGHVHAYERSVRMS 367
GE+MR FE+WFV +VD +FAGHVHAYERS R+S
Sbjct: 300 GEAMRTKFEAWFVKYKVDVVFAGHVHAYERSERVS 334
>pdb|4DSY|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DT2|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DHL|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
Length = 426
Score = 397 bits (1020), Expect = e-111, Method: Compositional matrix adjust.
Identities = 192/326 (58%), Positives = 248/326 (76%), Gaps = 3/326 (0%)
Query: 44 DIPLHNKVFDIPKGHNAPQQVRITQGDYDGKAVIISWVTPNELGSNRVQYGKLEKKYDSS 103
D+PL + VF +P G+NAPQQV ITQGD G+A+IISWVT +E GS+ V+Y +
Sbjct: 4 DMPLDSDVFRVPPGYNAPQQVHITQGDLVGRAMIISWVTMDEPGSSAVRYWSEKNGRKRI 63
Query: 104 AEGTVTNYTFYKYKSGYIHHCLVDDLEYDTKYYYKIGDGDSSREFWFQTPPKIHPDAPYT 163
A+G ++ Y F+ Y SG+IHH + L+Y+TKYYY++G +++R F F TPP+ D PYT
Sbjct: 64 AKGKMSTYRFFNYSSGFIHHTTIRKLKYNTKYYYEVGLRNTTRRFSFITPPQTGLDVPYT 123
Query: 164 FGIIGDLGQTYNSLSTLKHYMQS--GGQSVLFLGDLSYADRYEYNDVGIRWDSWGRFIEQ 221
FG+IGDLGQ+++S +TL HY S GQ+VLF+GDLSYADRY +D +RWD+WGRF E+
Sbjct: 124 FGLIGDLGQSFDSNTTLSHYELSPKKGQTVLFVGDLSYADRYPNHD-NVRWDTWGRFTER 182
Query: 222 SAAYQPWIWSAGNHEIEFMPNMGEVIPFKSYLHRIATPYTASKSTNPLWYAIRRASAHII 281
S AYQPWIW+AGNHEIEF P + E PFK + +R PY AS+ST+P WY+I+RASAHII
Sbjct: 183 SVAYQPWIWTAGNHEIEFAPEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHII 242
Query: 282 VLSSYSPYVKYTPQWWWLREELKKVDREKTPWLIVLMHVPLYSSNVVHYMEGESMRAVFE 341
VLSSYS Y + TPQ+ WL++EL+KV R +TPWLIVLMH PLY+S H+MEGE+MR FE
Sbjct: 243 VLSSYSAYGRGTPQYTWLKKELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFE 302
Query: 342 SWFVHSRVDFIFAGHVHAYERSVRMS 367
+WFV +VD +FAGHVHAYERS R+S
Sbjct: 303 AWFVKYKVDVVFAGHVHAYERSERVS 328
>pdb|2QFP|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFR|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase With Bound Sulfate
pdb|2QFR|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase With Bound Sulfate
Length = 424
Score = 397 bits (1019), Expect = e-111, Method: Compositional matrix adjust.
Identities = 192/326 (58%), Positives = 248/326 (76%), Gaps = 3/326 (0%)
Query: 44 DIPLHNKVFDIPKGHNAPQQVRITQGDYDGKAVIISWVTPNELGSNRVQYGKLEKKYDSS 103
D+PL + VF +P G+NAPQQV ITQGD G+A+IISWVT +E GS+ V+Y +
Sbjct: 2 DMPLDSDVFRVPPGYNAPQQVHITQGDLVGRAMIISWVTMDEPGSSAVRYWSEKNGRKRI 61
Query: 104 AEGTVTNYTFYKYKSGYIHHCLVDDLEYDTKYYYKIGDGDSSREFWFQTPPKIHPDAPYT 163
A+G ++ Y F+ Y SG+IHH + L+Y+TKYYY++G +++R F F TPP+ D PYT
Sbjct: 62 AKGKMSTYRFFNYSSGFIHHTTIRKLKYNTKYYYEVGLRNTTRRFSFITPPQTGLDVPYT 121
Query: 164 FGIIGDLGQTYNSLSTLKHYMQS--GGQSVLFLGDLSYADRYEYNDVGIRWDSWGRFIEQ 221
FG+IGDLGQ+++S +TL HY S GQ+VLF+GDLSYADRY +D +RWD+WGRF E+
Sbjct: 122 FGLIGDLGQSFDSNTTLSHYELSPKKGQTVLFVGDLSYADRYPNHD-NVRWDTWGRFTER 180
Query: 222 SAAYQPWIWSAGNHEIEFMPNMGEVIPFKSYLHRIATPYTASKSTNPLWYAIRRASAHII 281
S AYQPWIW+AGNHEIEF P + E PFK + +R PY AS+ST+P WY+I+RASAHII
Sbjct: 181 SVAYQPWIWTAGNHEIEFAPEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHII 240
Query: 282 VLSSYSPYVKYTPQWWWLREELKKVDREKTPWLIVLMHVPLYSSNVVHYMEGESMRAVFE 341
VLSSYS Y + TPQ+ WL++EL+KV R +TPWLIVLMH PLY+S H+MEGE+MR FE
Sbjct: 241 VLSSYSAYGRGTPQYTWLKKELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFE 300
Query: 342 SWFVHSRVDFIFAGHVHAYERSVRMS 367
+WFV +VD +FAGHVHAYERS R+S
Sbjct: 301 AWFVKYKVDVVFAGHVHAYERSERVS 326
>pdb|3P4L|A Chain A, Crystal Structure Of A Hemojuvelin-Binding Fragment Of
Neogenin
Length = 211
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 10/99 (10%)
Query: 61 PQQVRITQGDYDGKAVIISWVTPNELGSNRVQYGKLEKKYDSSAEGTVTNYTFYKYKSGY 120
P+ V + + K +I++W P+E Y Y + + ++
Sbjct: 109 PKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYIIY---YSTDVNAEIHDWVIEPVVGNR 165
Query: 121 IHHCLVDDLEYDTKYYYKI------GDGDSSREFWFQTP 153
+ H + +L DT YY+KI G G S F+TP
Sbjct: 166 LTHQ-IQELTLDTPYYFKIQARNSKGMGPMSEAVQFRTP 203
>pdb|2Z1P|A Chain A, The Enterococcus Faecalis Mscramm Ace Binds Its Ligands By
The Collagen Hug Model
Length = 348
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 50/133 (37%), Gaps = 34/133 (25%)
Query: 129 LEYDTKYYYKIGD--GDSSREFWF-------------------QTPPKIHPDAPYTFGII 167
+E D ++YK+GD G+S++ WF Q + +TF I+
Sbjct: 153 IERDYPFFYKVGDLAGESNQVRWFLNVNLNKSDVTEDISIADRQGSGQQLNKESFTFDIV 212
Query: 168 GDLGQTYNSLSTLKHYMQSGGQSVLFLGDLSYADRYEYNDVGIR-WDSWGRFIEQSAAYQ 226
D Y SL+ + Q G + F+ D ND +R + RF Y
Sbjct: 213 NDKETKYISLA---EFEQQGYGKIDFVTD---------NDFNLRFYRDKARFTSFIVRYT 260
Query: 227 PWIWSAGNHEIEF 239
I AG H+ F
Sbjct: 261 STITEAGQHQATF 273
>pdb|1X5K|A Chain A, The Solution Structure Of The Sixth Fibronectin Type Iii
Domain Of Human Neogenin
Length = 124
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 10/106 (9%)
Query: 61 PQQVRITQGDYDGKAVIISWVTPNELGSNRVQYGKLEKKYDSSAEGTVTNYTFYKYKSGY 120
P+ V + + K +I++W P+E Y Y + + ++
Sbjct: 22 PKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYIIY---YSTDVNAEIHDWVIEPVVGNR 78
Query: 121 IHHCLVDDLEYDTKYYYKI------GDGDSSREFWFQTPPKIHPDA 160
+ H + +L DT YY+KI G G S F+TP P +
Sbjct: 79 LTH-QIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRTPKASGPSS 123
>pdb|2EDE|A Chain A, Solution Structure Of The Sixth Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 114
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 10/100 (10%)
Query: 59 NAPQQVRITQGDYDGKAVIISWVTPNELGSNRVQYGKLEKKYDSSAEGTVTNYTFYKYKS 118
+AP+ + + + +AVI+SW P E Y Y + ++
Sbjct: 10 SAPKDLTVITREGKPRAVIVSWQPPLEANGKITAYILF---YTLDKNIPIDDWIMETISG 66
Query: 119 GYIHHCLVDDLEYDTKYYYKI------GDGDSSREFWFQT 152
+ H ++ DL DT YY++I G G S F+T
Sbjct: 67 DRLTHQIM-DLNLDTMYYFRIQARNSKGVGPLSDPILFRT 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,368,683
Number of Sequences: 62578
Number of extensions: 551178
Number of successful extensions: 1110
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1093
Number of HSP's gapped (non-prelim): 16
length of query: 374
length of database: 14,973,337
effective HSP length: 100
effective length of query: 274
effective length of database: 8,715,537
effective search space: 2388057138
effective search space used: 2388057138
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)