BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017286
(374 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FIG|A Chain A, Crystal Structure Of Leucine-bound Leua From Mycobacterium
Tuberculosis
pdb|3FIG|B Chain B, Crystal Structure Of Leucine-bound Leua From Mycobacterium
Tuberculosis
Length = 646
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 125 VSVPSWGPQDIDYHKDTRHSPFYAELNSLKLKNRAW-DNPINALP 168
V PSW PQ R+ PF E+ ++L+NR W D I+ P
Sbjct: 30 VGQPSWNPQRASSMPVNRYRPFAEEVEPIRLRNRTWPDRVIDRAP 74
>pdb|3HPS|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Leua
Complexed With Ketoisocaproate (Kic)
pdb|3HPS|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Leua
Complexed With Ketoisocaproate (Kic)
pdb|3HPZ|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Leua
Complexed With Bromopyruvate
pdb|3HPZ|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Leua
Complexed With Bromopyruvate
pdb|3HQ1|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Leua
Complexed With Citrate And Mn2+
pdb|3HQ1|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Leua
Complexed With Citrate And Mn2+
Length = 644
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 125 VSVPSWGPQDIDYHKDTRHSPFYAELNSLKLKNRAW-DNPINALP 168
V PSW PQ R+ PF E+ ++L+NR W D I+ P
Sbjct: 28 VGQPSWNPQRASSMPVNRYRPFAEEVEPIRLRNRTWPDRVIDRAP 72
>pdb|1SR9|A Chain A, Crystal Structure Of Leua From Mycobacterium Tuberculosis
pdb|1SR9|B Chain B, Crystal Structure Of Leua From Mycobacterium Tuberculosis
Length = 644
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 125 VSVPSWGPQDIDYHKDTRHSPFYAELNSLKLKNRAW-DNPINALP 168
V PSW PQ R+ PF E+ ++L+NR W D I+ P
Sbjct: 28 VGQPSWNPQRASSXPVNRYRPFAEEVEPIRLRNRTWPDRVIDRAP 72
>pdb|3U6W|A Chain A, Truncated M. Tuberculosis Leua (1-425) Complexed With Kiv
pdb|3U6W|B Chain B, Truncated M. Tuberculosis Leua (1-425) Complexed With Kiv
Length = 427
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 125 VSVPSWGPQDIDYHKDTRHSPFYAELNSLKLKNRAW-DNPINALP 168
V PSW PQ R+ PF E+ ++L+NR W D I+ P
Sbjct: 30 VGQPSWNPQRASSMPVNRYRPFAEEVEPIRLRNRTWPDRVIDRAP 74
>pdb|3HPX|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Leua
Active Site Domain 1-425 (Truncation Mutant
Delta:426-644)
pdb|3HPX|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Leua
Active Site Domain 1-425 (Truncation Mutant
Delta:426-644)
Length = 425
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 125 VSVPSWGPQDIDYHKDTRHSPFYAELNSLKLKNRAW-DNPINALP 168
V PSW PQ R+ PF E+ ++L+NR W D I+ P
Sbjct: 28 VGQPSWNPQRASSMPVNRYRPFAEEVEPIRLRNRTWPDRVIDRAP 72
>pdb|1JNM|A Chain A, Crystal Structure Of The JunCRE COMPLEX
pdb|1JNM|B Chain B, Crystal Structure Of The JunCRE COMPLEX
pdb|2H7H|A Chain A, Crystal Structure Of The Jun Bzip Homodimer Complexed With
Ap-1 Dna
pdb|2H7H|B Chain B, Crystal Structure Of The Jun Bzip Homodimer Complexed With
Ap-1 Dna
pdb|1FOS|F Chain F, Two Human C-Fos:c-Jun:dna Complexes
pdb|1FOS|H Chain H, Two Human C-Fos:c-Jun:dna Complexes
Length = 62
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 233 ETKRAKQQFA-QRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQ 280
E KR + + A +SR RKL+ IA LE V++L+A+ +E+++ L +Q
Sbjct: 3 ERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQ 51
>pdb|1A02|J Chain J, Structure Of The Dna Binding Domains Of Nfat, Fos And Jun
Bound To Dna
Length = 56
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 233 ETKRAKQQFA-QRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQ 280
E KR + + A +SR RKL+ IA LE V++L+A+ +E+++ L +Q
Sbjct: 4 ERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQ 52
>pdb|1T2K|C Chain C, Structure Of The Dna Binding Domains Of Irf3, Atf-2 And
Jun Bound To Dna
Length = 62
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 233 ETKRAKQQFA-QRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQ 280
E KR + + A +SR RKL+ IA LE V++L+A+ +E+++ L +Q
Sbjct: 4 ERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQ 52
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.127 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,823,061
Number of Sequences: 62578
Number of extensions: 358116
Number of successful extensions: 669
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 660
Number of HSP's gapped (non-prelim): 16
length of query: 374
length of database: 14,973,337
effective HSP length: 100
effective length of query: 274
effective length of database: 8,715,537
effective search space: 2388057138
effective search space used: 2388057138
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.6 bits)