Query 017286
Match_columns 374
No_of_seqs 143 out of 211
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 07:14:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017286.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017286hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00338 BRLZ basic region l 98.9 6.3E-09 1.4E-13 80.0 7.8 56 233-288 3-63 (65)
2 PF00170 bZIP_1: bZIP transcri 98.8 5.3E-08 1.1E-12 74.8 8.6 50 239-288 14-63 (64)
3 PF07716 bZIP_2: Basic region 98.4 2.1E-06 4.5E-11 64.3 7.7 47 233-279 3-53 (54)
4 KOG4005 Transcription factor X 97.8 0.00014 3E-09 70.4 10.9 71 231-301 69-140 (292)
5 KOG4343 bZIP transcription fac 97.5 0.00019 4E-09 75.8 6.9 62 231-292 274-343 (655)
6 KOG0709 CREB/ATF family transc 97.4 0.00022 4.9E-09 74.0 6.1 61 231-298 247-312 (472)
7 KOG0837 Transcriptional activa 97.1 0.0013 2.9E-08 64.2 6.8 42 239-280 215-256 (279)
8 PF06156 DUF972: Protein of un 96.9 0.0038 8.2E-08 53.6 7.0 50 251-300 8-57 (107)
9 PRK13169 DNA replication intia 96.7 0.0054 1.2E-07 53.0 7.0 49 252-300 9-57 (110)
10 KOG4571 Activating transcripti 96.6 0.0095 2.1E-07 59.1 9.0 51 240-311 237-288 (294)
11 PF14197 Cep57_CLD_2: Centroso 96.3 0.037 8E-07 44.2 8.7 60 263-322 3-62 (69)
12 PF06005 DUF904: Protein of un 96.2 0.1 2.3E-06 42.0 11.1 66 251-319 4-69 (72)
13 PF11559 ADIP: Afadin- and alp 96.2 0.14 3.1E-06 45.0 12.9 83 243-325 44-126 (151)
14 COG4467 Regulator of replicati 95.8 0.026 5.6E-07 49.1 6.3 46 252-297 9-54 (114)
15 PF12325 TMF_TATA_bd: TATA ele 95.8 0.2 4.2E-06 44.0 11.6 23 306-328 95-117 (120)
16 PF03131 bZIP_Maf: bZIP Maf tr 95.6 0.00079 1.7E-08 55.5 -3.4 53 239-291 39-91 (92)
17 PF14197 Cep57_CLD_2: Centroso 95.5 0.2 4.4E-06 40.0 10.0 67 255-321 2-68 (69)
18 PRK10884 SH3 domain-containing 95.5 0.13 2.8E-06 48.7 10.4 56 261-316 114-169 (206)
19 KOG3584 cAMP response element 95.3 0.044 9.6E-07 54.8 6.7 41 239-279 300-340 (348)
20 PF14662 CCDC155: Coiled-coil 94.8 0.27 5.8E-06 46.6 10.0 69 251-323 8-76 (193)
21 PF05700 BCAS2: Breast carcino 94.5 0.74 1.6E-05 43.5 12.5 79 251-329 136-218 (221)
22 COG2433 Uncharacterized conser 94.4 0.37 8E-06 52.4 11.2 44 251-294 422-465 (652)
23 COG3074 Uncharacterized protei 94.2 0.8 1.7E-05 37.5 10.1 29 251-279 4-32 (79)
24 PF06005 DUF904: Protein of un 93.7 0.59 1.3E-05 37.7 8.5 51 261-325 7-57 (72)
25 TIGR03752 conj_TIGR03752 integ 93.6 0.47 1E-05 50.2 10.0 67 259-325 60-134 (472)
26 PF14662 CCDC155: Coiled-coil 93.6 0.75 1.6E-05 43.6 10.3 42 254-295 98-139 (193)
27 PF12325 TMF_TATA_bd: TATA ele 93.3 1.5 3.2E-05 38.5 11.1 71 251-325 16-86 (120)
28 PF07989 Microtub_assoc: Micro 93.2 1.2 2.6E-05 36.1 9.6 59 253-325 2-68 (75)
29 PRK15422 septal ring assembly 92.8 1.4 3.1E-05 36.4 9.6 42 252-293 5-46 (79)
30 COG3883 Uncharacterized protei 92.6 1.5 3.2E-05 43.4 11.3 80 246-325 33-113 (265)
31 KOG3119 Basic region leucine z 92.6 0.41 8.9E-06 46.8 7.4 40 240-279 204-243 (269)
32 PF12711 Kinesin-relat_1: Kine 92.6 1.5 3.2E-05 36.8 9.5 58 262-321 21-84 (86)
33 COG1579 Zn-ribbon protein, pos 92.5 5.3 0.00011 39.1 14.7 86 240-325 41-135 (239)
34 PF05911 DUF869: Plant protein 92.5 1.6 3.4E-05 48.8 12.5 78 250-328 133-211 (769)
35 PF10224 DUF2205: Predicted co 92.5 0.72 1.6E-05 38.1 7.5 48 254-301 19-66 (80)
36 PF04102 SlyX: SlyX; InterPro 92.4 0.45 9.8E-06 37.6 6.1 51 251-301 4-54 (69)
37 PRK13729 conjugal transfer pil 92.2 0.51 1.1E-05 49.9 8.0 55 242-296 66-121 (475)
38 TIGR02894 DNA_bind_RsfA transc 92.2 1.2 2.7E-05 41.1 9.5 59 259-324 98-156 (161)
39 COG2433 Uncharacterized conser 92.2 2.6 5.7E-05 46.1 13.3 87 239-325 423-513 (652)
40 PF08614 ATG16: Autophagy prot 92.1 0.77 1.7E-05 42.3 8.2 48 253-300 118-165 (194)
41 PRK02119 hypothetical protein; 91.9 0.7 1.5E-05 37.2 6.7 46 252-297 10-55 (73)
42 PRK11637 AmiB activator; Provi 91.8 3.7 8.1E-05 42.0 13.5 56 246-301 56-111 (428)
43 PRK00295 hypothetical protein; 91.8 0.9 1.9E-05 36.0 7.1 47 253-299 7-53 (68)
44 PRK11637 AmiB activator; Provi 91.7 2.6 5.7E-05 43.1 12.3 71 253-323 56-126 (428)
45 PF04111 APG6: Autophagy prote 91.7 3.2 6.8E-05 41.5 12.5 79 243-321 56-134 (314)
46 PF07106 TBPIP: Tat binding pr 91.7 0.74 1.6E-05 41.3 7.4 73 251-323 86-161 (169)
47 PRK04325 hypothetical protein; 91.6 0.79 1.7E-05 36.9 6.8 46 253-298 11-56 (74)
48 PRK00736 hypothetical protein; 91.2 1.2 2.5E-05 35.4 7.2 47 252-298 6-52 (68)
49 PF10186 Atg14: UV radiation r 91.1 6 0.00013 37.3 13.2 53 244-296 56-108 (302)
50 PF00038 Filament: Intermediat 90.8 4.5 9.7E-05 39.1 12.3 75 253-327 70-144 (312)
51 PRK02793 phi X174 lysis protei 90.6 1.3 2.9E-05 35.4 7.1 48 251-298 8-55 (72)
52 PRK10884 SH3 domain-containing 90.1 4 8.7E-05 38.8 11.0 62 251-312 118-179 (206)
53 PF04156 IncA: IncA protein; 90.0 7.5 0.00016 35.1 12.4 78 251-328 95-179 (191)
54 TIGR00219 mreC rod shape-deter 89.9 2.1 4.6E-05 42.1 9.4 63 282-351 69-131 (283)
55 TIGR02449 conserved hypothetic 89.9 1.7 3.7E-05 34.7 7.1 39 259-297 15-53 (65)
56 PF10146 zf-C4H2: Zinc finger- 89.8 4.5 9.8E-05 39.1 11.3 84 241-324 22-105 (230)
57 PRK00846 hypothetical protein; 89.6 1.8 3.9E-05 35.5 7.2 49 251-299 13-61 (77)
58 KOG0982 Centrosomal protein Nu 89.6 6 0.00013 41.9 12.7 72 252-323 298-390 (502)
59 PF10805 DUF2730: Protein of u 89.5 3.9 8.5E-05 34.7 9.5 63 239-301 29-94 (106)
60 PF11559 ADIP: Afadin- and alp 89.4 7.9 0.00017 34.1 11.8 84 240-323 55-149 (151)
61 PRK04406 hypothetical protein; 89.4 1.8 4E-05 35.1 7.0 36 252-287 12-47 (75)
62 PRK13922 rod shape-determining 89.2 4.6 9.9E-05 38.8 10.9 48 278-329 68-115 (276)
63 PF04849 HAP1_N: HAP1 N-termin 89.1 3.3 7.1E-05 41.8 10.1 63 254-323 220-285 (306)
64 PF00038 Filament: Intermediat 89.1 15 0.00033 35.4 14.4 71 258-328 209-283 (312)
65 PRK09039 hypothetical protein; 88.8 11 0.00025 38.0 13.8 46 254-299 133-178 (343)
66 TIGR02449 conserved hypothetic 88.7 4.4 9.4E-05 32.4 8.5 55 269-323 4-62 (65)
67 PF04728 LPP: Lipoprotein leuc 88.6 3.3 7.2E-05 32.3 7.7 47 253-299 5-51 (56)
68 PF04156 IncA: IncA protein; 88.5 10 0.00022 34.3 12.0 49 253-301 90-138 (191)
69 TIGR03495 phage_LysB phage lys 88.5 5.6 0.00012 35.8 10.1 76 253-328 28-103 (135)
70 KOG4807 F-actin binding protei 88.3 5.1 0.00011 42.3 11.0 78 249-326 391-493 (593)
71 PF09755 DUF2046: Uncharacteri 88.0 3.6 7.9E-05 41.6 9.6 55 274-328 180-250 (310)
72 PF09730 BicD: Microtubule-ass 87.9 6.1 0.00013 44.0 12.0 62 253-318 71-132 (717)
73 PF08614 ATG16: Autophagy prot 87.9 11 0.00023 34.9 12.0 46 251-296 137-182 (194)
74 KOG0977 Nuclear envelope prote 87.2 5.8 0.00013 42.9 11.1 50 251-300 141-190 (546)
75 PF05837 CENP-H: Centromere pr 87.0 5.7 0.00012 33.8 8.9 67 259-326 4-70 (106)
76 PF12329 TMF_DNA_bd: TATA elem 87.0 10 0.00022 30.5 9.9 64 253-323 7-70 (74)
77 PF04111 APG6: Autophagy prote 86.9 9.3 0.0002 38.2 11.8 51 251-301 43-93 (314)
78 KOG1103 Predicted coiled-coil 86.8 2 4.3E-05 44.7 7.1 81 233-314 218-300 (561)
79 KOG1899 LAR transmembrane tyro 86.8 7 0.00015 43.3 11.4 82 239-322 133-220 (861)
80 PRK09039 hypothetical protein; 86.6 6.6 0.00014 39.7 10.6 47 255-301 120-166 (343)
81 PF10186 Atg14: UV radiation r 86.5 12 0.00026 35.2 11.8 44 258-301 56-99 (302)
82 PF06216 RTBV_P46: Rice tungro 86.3 3.1 6.7E-05 41.6 7.9 56 245-300 54-113 (389)
83 PF12711 Kinesin-relat_1: Kine 86.1 2.8 6.2E-05 35.1 6.4 64 259-324 4-68 (86)
84 KOG4005 Transcription factor X 85.7 6.8 0.00015 38.8 9.8 54 253-306 99-152 (292)
85 PF10211 Ax_dynein_light: Axon 85.6 11 0.00023 35.2 10.7 34 253-286 122-155 (189)
86 PF15070 GOLGA2L5: Putative go 85.4 10 0.00022 41.5 12.0 55 248-302 119-197 (617)
87 PF07888 CALCOCO1: Calcium bin 85.4 13 0.00028 40.4 12.6 14 94-107 48-61 (546)
88 PF07106 TBPIP: Tat binding pr 85.3 4.1 9E-05 36.5 7.7 43 253-300 81-123 (169)
89 PF12808 Mto2_bdg: Micro-tubul 84.9 3.3 7.3E-05 31.8 5.8 49 248-320 1-49 (52)
90 PF07888 CALCOCO1: Calcium bin 84.7 21 0.00045 38.8 13.7 15 92-106 32-46 (546)
91 PF05557 MAD: Mitotic checkpoi 84.3 9 0.00019 42.0 11.1 76 252-327 511-633 (722)
92 PF03962 Mnd1: Mnd1 family; I 84.2 26 0.00057 32.7 12.6 43 282-324 106-152 (188)
93 TIGR02894 DNA_bind_RsfA transc 84.2 7.9 0.00017 36.0 9.0 66 235-301 38-119 (161)
94 PF15619 Lebercilin: Ciliary p 84.2 10 0.00023 35.6 10.1 69 252-323 119-187 (194)
95 PF15058 Speriolin_N: Sperioli 83.9 2 4.4E-05 40.9 5.2 43 276-318 9-51 (200)
96 PF14817 HAUS5: HAUS augmin-li 83.8 16 0.00035 40.2 12.7 80 245-324 73-152 (632)
97 COG1579 Zn-ribbon protein, pos 83.6 25 0.00054 34.5 12.6 57 245-301 83-139 (239)
98 PF00170 bZIP_1: bZIP transcri 83.6 5.1 0.00011 30.6 6.5 27 274-300 28-54 (64)
99 KOG0995 Centromere-associated 83.6 16 0.00035 39.8 12.3 57 240-296 268-325 (581)
100 KOG0239 Kinesin (KAR3 subfamil 83.5 11 0.00024 41.7 11.4 71 253-323 243-316 (670)
101 PRK15422 septal ring assembly 83.5 8.9 0.00019 31.9 8.1 36 262-297 8-43 (79)
102 PF09304 Cortex-I_coil: Cortex 83.5 28 0.00061 30.5 11.5 43 255-297 13-55 (107)
103 COG3074 Uncharacterized protei 83.5 6.2 0.00013 32.4 7.1 34 259-292 26-59 (79)
104 KOG3863 bZIP transcription fac 83.4 3.1 6.7E-05 45.4 7.0 55 240-301 500-554 (604)
105 PF05103 DivIVA: DivIVA protei 83.3 0.72 1.6E-05 39.0 1.8 47 251-297 25-71 (131)
106 KOG4196 bZIP transcription fac 83.2 16 0.00034 33.2 10.1 57 261-325 57-113 (135)
107 PF11932 DUF3450: Protein of u 83.2 27 0.00059 33.3 12.6 45 255-299 53-97 (251)
108 PHA02562 46 endonuclease subun 83.0 30 0.00064 36.0 13.8 51 250-300 336-386 (562)
109 PF10211 Ax_dynein_light: Axon 82.9 29 0.00062 32.4 12.3 54 269-322 124-178 (189)
110 PF06156 DUF972: Protein of un 82.7 7.6 0.00017 33.5 7.8 52 268-326 4-55 (107)
111 PF15290 Syntaphilin: Golgi-lo 82.6 7.9 0.00017 39.0 8.9 28 253-280 77-104 (305)
112 PF08172 CASP_C: CASP C termin 82.5 9.5 0.0002 37.2 9.3 31 291-321 91-121 (248)
113 PF08317 Spc7: Spc7 kinetochor 82.4 9.4 0.0002 38.0 9.5 12 314-325 276-287 (325)
114 PF02403 Seryl_tRNA_N: Seryl-t 82.1 26 0.00056 29.0 10.6 43 258-300 43-88 (108)
115 KOG3650 Predicted coiled-coil 82.1 5.6 0.00012 34.7 6.8 45 256-300 61-105 (120)
116 PF08172 CASP_C: CASP C termin 82.1 3.7 8E-05 40.0 6.4 52 239-299 83-134 (248)
117 KOG0243 Kinesin-like protein [ 82.0 22 0.00047 41.4 13.1 66 257-322 447-512 (1041)
118 KOG4643 Uncharacterized coiled 82.0 16 0.00034 42.5 11.9 54 247-300 505-558 (1195)
119 COG4372 Uncharacterized protei 82.0 35 0.00076 36.1 13.6 86 240-325 126-228 (499)
120 PF13747 DUF4164: Domain of un 82.0 12 0.00025 31.2 8.4 60 240-299 21-80 (89)
121 PF15294 Leu_zip: Leucine zipp 82.0 15 0.00033 36.7 10.7 51 274-324 127-177 (278)
122 PRK10803 tol-pal system protei 81.8 8.3 0.00018 37.5 8.7 58 236-298 44-101 (263)
123 KOG4674 Uncharacterized conser 81.7 5.8 0.00013 48.2 8.9 58 244-301 1236-1300(1822)
124 TIGR03752 conj_TIGR03752 integ 81.5 16 0.00034 39.1 11.2 50 253-302 75-125 (472)
125 PF04880 NUDE_C: NUDE protein, 81.3 2.6 5.5E-05 39.1 4.7 53 253-309 2-54 (166)
126 PF07798 DUF1640: Protein of u 81.1 25 0.00055 32.1 11.1 46 255-300 48-94 (177)
127 PF04849 HAP1_N: HAP1 N-termin 81.1 12 0.00025 38.0 9.6 64 250-320 240-303 (306)
128 PF00769 ERM: Ezrin/radixin/mo 80.9 11 0.00023 36.5 9.0 71 255-325 51-121 (246)
129 KOG0977 Nuclear envelope prote 80.8 32 0.00069 37.5 13.3 48 278-325 147-194 (546)
130 TIGR02231 conserved hypothetic 80.7 22 0.00048 37.4 12.0 72 252-323 79-168 (525)
131 PF06428 Sec2p: GDP/GTP exchan 80.7 1.1 2.5E-05 38.2 2.1 72 252-325 9-83 (100)
132 KOG4673 Transcription factor T 80.7 10 0.00022 42.6 9.5 71 257-327 865-952 (961)
133 PF04012 PspA_IM30: PspA/IM30 80.6 32 0.0007 31.8 11.9 109 246-359 93-206 (221)
134 KOG1029 Endocytic adaptor prot 80.4 17 0.00036 41.4 11.2 57 243-299 392-450 (1118)
135 KOG0250 DNA repair protein RAD 80.4 28 0.0006 40.6 13.3 60 266-325 395-454 (1074)
136 TIGR02209 ftsL_broad cell divi 79.7 9.1 0.0002 30.2 6.9 42 264-305 23-64 (85)
137 PF09304 Cortex-I_coil: Cortex 79.7 22 0.00047 31.2 9.5 24 254-277 40-63 (107)
138 KOG4643 Uncharacterized coiled 79.4 10 0.00023 43.8 9.5 84 242-325 285-377 (1195)
139 PF12329 TMF_DNA_bd: TATA elem 79.4 27 0.00058 28.1 9.4 51 251-301 12-62 (74)
140 KOG0946 ER-Golgi vesicle-tethe 79.3 12 0.00027 42.4 9.8 48 251-298 650-697 (970)
141 TIGR02169 SMC_prok_A chromosom 79.0 50 0.0011 37.0 14.7 8 10-17 7-14 (1164)
142 PF08317 Spc7: Spc7 kinetochor 79.0 73 0.0016 31.8 14.5 50 273-322 210-259 (325)
143 PF05266 DUF724: Protein of un 78.7 33 0.00071 32.3 11.3 38 240-277 99-136 (190)
144 PF05529 Bap31: B-cell recepto 78.4 17 0.00037 33.2 9.2 40 284-323 152-191 (192)
145 KOG2010 Double stranded RNA bi 78.4 8 0.00017 39.8 7.5 65 253-324 121-185 (405)
146 PF10168 Nup88: Nuclear pore c 78.4 13 0.00028 41.4 9.8 46 254-299 561-606 (717)
147 PF05667 DUF812: Protein of un 78.0 34 0.00073 37.5 12.6 59 248-306 325-383 (594)
148 PF08232 Striatin: Striatin fa 77.9 20 0.00044 31.8 9.1 53 274-326 13-65 (134)
149 PF13870 DUF4201: Domain of un 77.8 17 0.00038 32.8 8.9 73 253-325 93-170 (177)
150 PF09726 Macoilin: Transmembra 77.8 11 0.00023 41.9 8.9 66 255-328 443-512 (697)
151 PF05377 FlaC_arch: Flagella a 77.6 9.4 0.0002 29.7 6.0 36 253-302 2-37 (55)
152 TIGR02168 SMC_prok_B chromosom 77.6 55 0.0012 36.4 14.3 10 9-18 6-16 (1179)
153 PF02403 Seryl_tRNA_N: Seryl-t 77.6 17 0.00036 30.2 8.1 72 248-319 26-100 (108)
154 KOG3119 Basic region leucine z 77.6 11 0.00025 36.9 8.2 64 250-327 193-256 (269)
155 PF12777 MT: Microtubule-bindi 77.1 12 0.00026 37.5 8.4 82 232-320 216-297 (344)
156 COG4942 Membrane-bound metallo 77.1 42 0.0009 35.5 12.5 52 251-302 59-110 (420)
157 PF01166 TSC22: TSC-22/dip/bun 77.1 4 8.8E-05 32.2 4.0 30 265-294 14-43 (59)
158 PRK00888 ftsB cell division pr 76.7 8.2 0.00018 32.9 6.1 28 272-299 34-61 (105)
159 PF05483 SCP-1: Synaptonemal c 76.6 27 0.00058 39.2 11.3 68 255-322 584-651 (786)
160 PF00261 Tropomyosin: Tropomyo 76.6 34 0.00074 32.5 10.9 46 254-299 137-182 (237)
161 PRK13169 DNA replication intia 76.6 16 0.00035 31.8 8.0 50 268-324 4-53 (110)
162 PRK13922 rod shape-determining 76.6 14 0.00031 35.4 8.5 13 283-295 97-109 (276)
163 PHA02562 46 endonuclease subun 76.4 25 0.00055 36.5 10.8 27 251-277 174-200 (562)
164 PRK13729 conjugal transfer pil 76.4 9.9 0.00021 40.6 7.8 51 264-321 75-125 (475)
165 PF15294 Leu_zip: Leucine zipp 75.9 16 0.00035 36.6 8.8 45 256-300 130-174 (278)
166 PF05266 DUF724: Protein of un 75.6 73 0.0016 30.0 13.3 12 309-320 154-165 (190)
167 PF08232 Striatin: Striatin fa 75.5 15 0.00032 32.6 7.6 48 253-300 13-60 (134)
168 KOG4603 TBP-1 interacting prot 75.5 24 0.00053 33.5 9.3 74 252-325 87-166 (201)
169 PF04977 DivIC: Septum formati 75.4 10 0.00022 29.1 5.9 30 269-298 21-50 (80)
170 PF09726 Macoilin: Transmembra 75.2 47 0.001 37.1 12.9 35 244-278 481-515 (697)
171 TIGR01005 eps_transp_fam exopo 75.2 25 0.00053 38.5 10.7 91 231-321 163-265 (754)
172 COG2900 SlyX Uncharacterized p 75.2 13 0.00029 30.4 6.6 44 252-295 9-52 (72)
173 PF02841 GBP_C: Guanylate-bind 74.8 56 0.0012 32.0 12.1 12 309-320 286-297 (297)
174 KOG0161 Myosin class II heavy 74.6 28 0.00062 43.0 11.8 60 240-299 1649-1708(1930)
175 COG1792 MreC Cell shape-determ 74.5 18 0.0004 35.7 8.8 63 259-329 50-112 (284)
176 PF10473 CENP-F_leu_zip: Leuci 74.3 68 0.0015 29.1 13.0 61 240-300 41-101 (140)
177 PF08703 PLC-beta_C: PLC-beta 74.2 80 0.0017 29.9 12.5 80 239-318 15-104 (185)
178 PF07851 TMPIT: TMPIT-like pro 74.0 47 0.001 34.1 11.6 76 250-325 3-86 (330)
179 smart00502 BBC B-Box C-termina 73.6 47 0.001 26.9 13.4 82 244-325 14-97 (127)
180 smart00338 BRLZ basic region l 73.5 30 0.00066 26.4 8.0 28 273-300 27-54 (65)
181 PRK00888 ftsB cell division pr 73.4 10 0.00022 32.3 5.9 34 246-279 29-62 (105)
182 PF15035 Rootletin: Ciliary ro 73.3 20 0.00043 33.5 8.2 38 278-322 73-110 (182)
183 COG4467 Regulator of replicati 73.2 15 0.00032 32.4 6.8 44 256-299 6-49 (114)
184 PF05791 Bacillus_HBL: Bacillu 73.2 35 0.00076 31.5 9.8 77 243-322 102-178 (184)
185 PRK02119 hypothetical protein; 73.1 17 0.00037 29.3 6.8 26 252-277 3-28 (73)
186 PF12718 Tropomyosin_1: Tropom 72.8 37 0.0008 30.4 9.5 40 253-292 16-55 (143)
187 PF15035 Rootletin: Ciliary ro 72.7 43 0.00093 31.3 10.3 59 249-307 65-123 (182)
188 KOG2264 Exostosin EXT1L [Signa 72.5 33 0.00071 38.1 10.6 27 253-279 95-121 (907)
189 PF12718 Tropomyosin_1: Tropom 72.4 46 0.001 29.8 10.1 56 247-302 31-89 (143)
190 PF09730 BicD: Microtubule-ass 72.3 27 0.00059 39.1 10.2 52 256-307 32-84 (717)
191 KOG4343 bZIP transcription fac 72.2 4.6 0.0001 43.8 4.2 54 246-301 285-338 (655)
192 PRK02224 chromosome segregatio 71.9 41 0.00089 37.2 11.6 22 253-274 594-615 (880)
193 KOG2629 Peroxisomal membrane a 71.8 55 0.0012 33.3 11.3 66 255-330 133-198 (300)
194 PRK14872 rod shape-determining 71.8 19 0.0004 37.0 8.3 60 260-323 33-97 (337)
195 KOG0995 Centromere-associated 71.6 48 0.0011 36.3 11.6 84 243-326 244-327 (581)
196 PF04012 PspA_IM30: PspA/IM30 71.4 77 0.0017 29.3 11.7 85 240-324 40-129 (221)
197 PF10473 CENP-F_leu_zip: Leuci 71.1 81 0.0018 28.6 13.9 52 261-312 55-106 (140)
198 PF10234 Cluap1: Clusterin-ass 70.9 46 0.00099 33.2 10.5 74 249-325 156-243 (267)
199 PF09755 DUF2046: Uncharacteri 70.9 44 0.00096 34.1 10.5 39 254-292 23-61 (310)
200 COG2919 Septum formation initi 70.6 33 0.00071 29.6 8.4 48 265-315 50-97 (117)
201 PF05911 DUF869: Plant protein 70.3 31 0.00067 39.0 10.2 51 252-302 93-150 (769)
202 PF14523 Syntaxin_2: Syntaxin- 70.3 56 0.0012 26.4 10.7 75 251-325 10-89 (102)
203 TIGR02977 phageshock_pspA phag 69.9 99 0.0022 29.1 12.3 104 246-355 94-201 (219)
204 KOG1265 Phospholipase C [Lipid 69.9 60 0.0013 37.7 12.2 64 239-302 1037-1105(1189)
205 PF14915 CCDC144C: CCDC144C pr 69.8 1.1E+02 0.0025 31.1 13.1 67 240-306 182-248 (305)
206 PF05622 HOOK: HOOK protein; 69.7 1.5 3.2E-05 47.9 0.0 41 240-281 315-355 (713)
207 PRK14127 cell division protein 69.4 31 0.00067 30.1 8.0 17 286-302 85-101 (109)
208 KOG2391 Vacuolar sorting prote 69.3 44 0.00096 34.6 10.2 63 239-313 211-273 (365)
209 COG3028 Uncharacterized protei 69.2 39 0.00086 32.1 9.1 92 237-337 70-167 (187)
210 PF10481 CENP-F_N: Cenp-F N-te 69.1 41 0.0009 34.0 9.7 67 259-325 61-127 (307)
211 PF04871 Uso1_p115_C: Uso1 / p 69.1 81 0.0017 28.1 10.8 70 251-326 27-96 (136)
212 PF07989 Microtub_assoc: Micro 69.0 34 0.00074 27.8 7.7 26 278-303 6-31 (75)
213 PF13815 Dzip-like_N: Iguana/D 69.0 27 0.00059 29.9 7.6 34 265-298 80-113 (118)
214 COG1196 Smc Chromosome segrega 68.9 54 0.0012 38.2 12.1 14 56-69 52-65 (1163)
215 TIGR00219 mreC rod shape-deter 68.9 9.7 0.00021 37.5 5.4 38 259-296 67-108 (283)
216 PF06548 Kinesin-related: Kine 68.9 32 0.0007 36.8 9.4 57 269-325 389-473 (488)
217 PF12709 Kinetocho_Slk19: Cent 68.9 20 0.00043 30.3 6.4 51 251-301 27-78 (87)
218 PF15066 CAGE1: Cancer-associa 68.7 35 0.00077 36.7 9.7 71 255-325 342-429 (527)
219 PF15619 Lebercilin: Ciliary p 68.7 94 0.002 29.3 11.7 88 240-328 70-160 (194)
220 KOG4196 bZIP transcription fac 68.6 42 0.00091 30.5 8.8 55 239-300 62-116 (135)
221 PF07407 Seadorna_VP6: Seadorn 68.6 17 0.00037 37.6 7.2 29 273-301 33-61 (420)
222 KOG4360 Uncharacterized coiled 68.5 62 0.0013 35.4 11.5 71 254-324 219-293 (596)
223 smart00787 Spc7 Spc7 kinetocho 68.3 87 0.0019 31.6 12.0 47 253-299 146-192 (312)
224 KOG0161 Myosin class II heavy 68.3 48 0.001 41.1 11.8 75 251-325 1090-1171(1930)
225 PRK05255 hypothetical protein; 68.2 45 0.00098 31.2 9.3 91 238-337 61-157 (171)
226 PRK04406 hypothetical protein; 68.1 35 0.00075 27.7 7.6 24 253-276 6-29 (75)
227 KOG2129 Uncharacterized conser 68.0 15 0.00034 39.0 6.9 40 254-293 46-85 (552)
228 KOG2391 Vacuolar sorting prote 68.0 40 0.00087 34.9 9.6 50 247-296 228-277 (365)
229 PF07111 HCR: Alpha helical co 67.6 84 0.0018 35.4 12.6 84 246-329 312-395 (739)
230 PF13935 Ead_Ea22: Ead/Ea22-li 67.3 23 0.0005 31.4 7.0 12 248-259 78-89 (139)
231 PRK02224 chromosome segregatio 67.2 96 0.0021 34.4 13.2 16 254-269 533-548 (880)
232 PF13094 CENP-Q: CENP-Q, a CEN 67.2 54 0.0012 29.2 9.4 57 258-314 27-83 (160)
233 TIGR03495 phage_LysB phage lys 67.1 59 0.0013 29.4 9.5 63 264-326 18-80 (135)
234 PF09744 Jnk-SapK_ap_N: JNK_SA 67.0 92 0.002 28.7 11.0 67 260-326 84-154 (158)
235 COG1196 Smc Chromosome segrega 66.9 1.4E+02 0.0031 34.9 14.9 22 251-272 828-849 (1163)
236 PF05812 Herpes_BLRF2: Herpesv 66.7 7.6 0.00016 34.4 3.7 28 251-278 3-30 (118)
237 TIGR03007 pepcterm_ChnLen poly 66.7 73 0.0016 32.9 11.5 20 306-325 354-373 (498)
238 PF04999 FtsL: Cell division p 66.6 25 0.00055 28.6 6.7 43 264-306 34-76 (97)
239 PF14645 Chibby: Chibby family 66.5 17 0.00037 31.8 5.9 20 258-277 78-97 (116)
240 PF10168 Nup88: Nuclear pore c 66.4 1.4E+02 0.003 33.6 14.2 40 245-284 573-612 (717)
241 KOG4673 Transcription factor T 66.3 27 0.00058 39.4 8.5 21 309-329 748-768 (961)
242 TIGR02132 phaR_Bmeg polyhydrox 66.1 52 0.0011 31.4 9.3 50 252-301 80-129 (189)
243 KOG4370 Ral-GTPase effector RL 66.0 18 0.0004 38.5 6.9 46 269-328 410-455 (514)
244 PF05557 MAD: Mitotic checkpoi 66.0 42 0.0009 37.0 10.1 25 300-324 559-583 (722)
245 TIGR01843 type_I_hlyD type I s 66.0 1.4E+02 0.0031 29.4 14.2 17 256-272 149-165 (423)
246 PF12709 Kinetocho_Slk19: Cent 65.9 45 0.00099 28.2 8.0 47 245-291 36-82 (87)
247 COG3883 Uncharacterized protei 65.9 58 0.0013 32.5 10.1 14 286-299 98-111 (265)
248 KOG4797 Transcriptional regula 65.9 11 0.00024 33.3 4.6 30 264-293 66-95 (123)
249 KOG0976 Rho/Rac1-interacting s 65.9 49 0.0011 38.1 10.4 55 250-304 84-138 (1265)
250 PF07716 bZIP_2: Basic region 65.7 17 0.00036 27.1 5.0 28 273-300 26-53 (54)
251 PF09728 Taxilin: Myosin-like 65.6 40 0.00087 33.8 9.1 68 261-328 110-181 (309)
252 TIGR00998 8a0101 efflux pump m 65.6 52 0.0011 31.7 9.7 26 254-279 97-122 (334)
253 KOG0982 Centrosomal protein Nu 65.6 26 0.00056 37.4 7.9 62 265-326 250-330 (502)
254 TIGR03185 DNA_S_dndD DNA sulfu 65.5 62 0.0013 35.2 11.1 46 252-297 422-467 (650)
255 KOG0980 Actin-binding protein 65.5 90 0.0019 36.1 12.4 63 266-328 467-529 (980)
256 PF15070 GOLGA2L5: Putative go 65.4 84 0.0018 34.7 12.1 18 251-268 50-67 (617)
257 PF10146 zf-C4H2: Zinc finger- 65.3 1.3E+02 0.0028 29.2 12.2 73 267-339 34-114 (230)
258 PF04977 DivIC: Septum formati 65.2 21 0.00045 27.5 5.6 30 248-277 21-50 (80)
259 KOG4436 Predicted GTPase activ 65.2 7.5 0.00016 44.0 4.2 75 251-325 829-908 (948)
260 KOG2189 Vacuolar H+-ATPase V0 65.2 47 0.001 37.8 10.2 29 241-269 46-74 (829)
261 KOG4460 Nuclear pore complex, 65.1 80 0.0017 35.0 11.5 89 242-330 593-692 (741)
262 PF08581 Tup_N: Tup N-terminal 65.1 78 0.0017 26.1 10.8 65 258-325 11-75 (79)
263 PHA03162 hypothetical protein; 64.9 7.2 0.00015 35.3 3.3 28 249-276 11-38 (135)
264 PF03961 DUF342: Protein of un 64.8 52 0.0011 34.1 10.0 26 254-279 337-362 (451)
265 PRK10698 phage shock protein P 64.4 84 0.0018 30.0 10.6 60 249-308 97-156 (222)
266 PF10481 CENP-F_N: Cenp-F N-te 64.2 63 0.0014 32.8 10.0 56 255-324 78-133 (307)
267 PF07412 Geminin: Geminin; In 64.1 21 0.00046 34.2 6.5 28 266-293 126-153 (200)
268 KOG4360 Uncharacterized coiled 64.1 92 0.002 34.1 11.7 57 245-301 192-248 (596)
269 PHA03155 hypothetical protein; 64.0 7.8 0.00017 34.2 3.3 24 253-276 10-33 (115)
270 KOG2129 Uncharacterized conser 63.9 61 0.0013 34.7 10.2 18 308-325 254-271 (552)
271 KOG3850 Predicted membrane pro 63.7 1E+02 0.0023 32.7 11.7 77 249-329 287-372 (455)
272 PF08647 BRE1: BRE1 E3 ubiquit 63.7 86 0.0019 26.1 10.3 54 243-296 16-69 (96)
273 PF14988 DUF4515: Domain of un 63.6 1.4E+02 0.003 28.4 12.3 53 271-323 46-101 (206)
274 KOG2273 Membrane coat complex 63.4 1E+02 0.0022 32.2 11.9 77 249-325 385-467 (503)
275 PF07926 TPR_MLP1_2: TPR/MLP1/ 63.3 1E+02 0.0022 26.8 10.2 76 249-324 15-90 (132)
276 PLN03188 kinesin-12 family pro 63.2 37 0.00081 40.4 9.3 58 268-325 1158-1243(1320)
277 PF11180 DUF2968: Protein of u 63.2 1.5E+02 0.0031 28.6 11.8 66 254-319 115-180 (192)
278 KOG0964 Structural maintenance 63.1 1.1E+02 0.0025 35.8 12.8 75 254-328 421-495 (1200)
279 KOG4674 Uncharacterized conser 63.0 94 0.002 38.5 12.7 82 240-321 1245-1342(1822)
280 PRK03918 chromosome segregatio 62.9 92 0.002 34.4 12.0 45 254-298 189-233 (880)
281 PF02183 HALZ: Homeobox associ 62.6 20 0.00044 26.5 4.8 8 312-319 31-38 (45)
282 PRK11281 hypothetical protein; 62.5 69 0.0015 37.7 11.4 16 345-360 356-371 (1113)
283 PF06810 Phage_GP20: Phage min 62.4 87 0.0019 28.5 9.9 14 287-300 52-65 (155)
284 PF05377 FlaC_arch: Flagella a 62.4 20 0.00044 27.9 4.9 33 252-284 8-40 (55)
285 PF07889 DUF1664: Protein of u 62.3 64 0.0014 28.8 8.7 56 263-321 41-96 (126)
286 PF06818 Fez1: Fez1; InterPro 62.3 81 0.0018 30.4 10.0 73 249-321 8-80 (202)
287 PF10174 Cast: RIM-binding pro 62.0 78 0.0017 36.0 11.3 45 271-315 328-372 (775)
288 PF15030 DUF4527: Protein of u 61.9 1.1E+02 0.0023 30.7 10.9 51 268-318 54-104 (277)
289 PF12795 MscS_porin: Mechanose 61.9 68 0.0015 30.4 9.5 65 257-321 149-213 (240)
290 COG4026 Uncharacterized protei 61.8 80 0.0017 31.4 10.0 64 254-324 138-201 (290)
291 KOG0288 WD40 repeat protein Ti 61.8 67 0.0014 34.2 10.0 30 264-293 40-69 (459)
292 PF03980 Nnf1: Nnf1 ; InterPr 61.7 14 0.0003 31.0 4.3 45 232-279 64-108 (109)
293 KOG0971 Microtubule-associated 61.6 1.1E+02 0.0023 35.9 12.1 62 239-300 398-469 (1243)
294 smart00787 Spc7 Spc7 kinetocho 61.3 1.3E+02 0.0028 30.5 11.7 10 73-82 9-18 (312)
295 KOG4807 F-actin binding protei 61.2 1.1E+02 0.0023 32.8 11.4 49 277-325 461-537 (593)
296 KOG0933 Structural maintenance 61.1 81 0.0018 37.0 11.2 68 255-322 791-858 (1174)
297 PF08606 Prp19: Prp19/Pso4-lik 61.1 56 0.0012 26.7 7.4 51 268-318 4-54 (70)
298 KOG4403 Cell surface glycoprot 61.0 61 0.0013 34.9 9.6 85 241-325 232-320 (575)
299 PF12761 End3: Actin cytoskele 60.9 1.2E+02 0.0026 29.1 10.8 76 233-320 97-194 (195)
300 PRK05431 seryl-tRNA synthetase 60.8 74 0.0016 33.1 10.3 33 251-283 28-60 (425)
301 TIGR00414 serS seryl-tRNA synt 60.8 56 0.0012 33.9 9.4 28 251-278 30-57 (418)
302 PRK05431 seryl-tRNA synthetase 60.8 49 0.0011 34.4 9.0 46 255-300 39-87 (425)
303 KOG0946 ER-Golgi vesicle-tethe 60.7 33 0.00071 39.2 8.0 44 253-296 673-716 (970)
304 PF04340 DUF484: Protein of un 60.5 39 0.00084 31.7 7.5 48 252-303 41-88 (225)
305 PF15254 CCDC14: Coiled-coil d 60.5 90 0.0019 35.7 11.2 27 253-279 443-469 (861)
306 PF13166 AAA_13: AAA domain 60.5 1.6E+02 0.0034 31.8 13.0 68 252-319 404-471 (712)
307 PF06818 Fez1: Fez1; InterPro 60.4 28 0.00061 33.4 6.6 33 266-298 74-106 (202)
308 PF02183 HALZ: Homeobox associ 60.3 30 0.00066 25.6 5.4 37 256-299 3-39 (45)
309 PLN02678 seryl-tRNA synthetase 60.2 1.1E+02 0.0023 32.6 11.4 68 250-317 32-102 (448)
310 PF04642 DUF601: Protein of un 60.1 46 0.00099 33.5 8.1 57 252-308 218-283 (311)
311 PRK10361 DNA recombination pro 60.0 2.3E+02 0.005 30.6 13.9 27 271-297 66-92 (475)
312 KOG4593 Mitotic checkpoint pro 59.9 56 0.0012 36.7 9.5 70 250-323 250-322 (716)
313 PRK02793 phi X174 lysis protei 59.9 58 0.0012 26.1 7.3 24 254-277 4-27 (72)
314 KOG0963 Transcription factor/C 59.7 52 0.0011 36.4 9.2 53 262-322 307-359 (629)
315 TIGR00634 recN DNA repair prot 59.7 22 0.00047 37.9 6.4 18 291-308 214-231 (563)
316 PF04102 SlyX: SlyX; InterPro 59.7 51 0.0011 26.0 7.0 22 256-277 2-23 (69)
317 PF15369 KIAA1328: Uncharacter 59.7 2E+02 0.0044 29.7 12.8 83 257-357 25-125 (328)
318 PF13805 Pil1: Eisosome compon 59.5 1E+02 0.0023 30.8 10.6 27 251-277 131-157 (271)
319 PF07200 Mod_r: Modifier of ru 59.3 64 0.0014 28.2 8.3 76 250-326 20-95 (150)
320 PRK06800 fliH flagellar assemb 59.2 64 0.0014 31.2 8.6 11 315-325 88-98 (228)
321 PF04859 DUF641: Plant protein 59.2 21 0.00045 32.1 5.2 43 253-295 89-131 (131)
322 PTZ00186 heat shock 70 kDa pre 59.0 36 0.00078 37.4 8.0 9 326-334 643-651 (657)
323 PF09738 DUF2051: Double stran 58.7 96 0.0021 31.4 10.3 43 262-307 109-151 (302)
324 PF15397 DUF4618: Domain of un 58.7 1.4E+02 0.0031 29.7 11.2 69 251-319 81-154 (258)
325 PF13851 GAS: Growth-arrest sp 58.4 1.7E+02 0.0036 27.7 12.1 64 260-323 64-130 (201)
326 KOG0999 Microtubule-associated 58.4 37 0.0008 37.5 7.7 21 251-271 170-190 (772)
327 PF05667 DUF812: Protein of un 58.0 80 0.0017 34.7 10.3 74 252-325 336-416 (594)
328 PF13851 GAS: Growth-arrest sp 57.9 1.7E+02 0.0036 27.6 12.7 73 253-325 88-161 (201)
329 KOG0963 Transcription factor/C 57.7 1.9E+02 0.0041 32.3 12.9 19 305-323 290-308 (629)
330 PF00769 ERM: Ezrin/radixin/mo 57.6 1.5E+02 0.0032 28.8 11.1 88 241-328 23-117 (246)
331 KOG3335 Predicted coiled-coil 57.5 24 0.00052 33.4 5.5 43 234-277 90-132 (181)
332 KOG4657 Uncharacterized conser 57.5 2.1E+02 0.0045 28.5 13.5 68 254-328 58-128 (246)
333 PF15112 DUF4559: Domain of un 57.3 50 0.0011 33.6 8.0 20 306-325 270-289 (307)
334 PRK10636 putative ABC transpor 57.2 93 0.002 33.8 10.7 49 252-300 564-619 (638)
335 TIGR03794 NHPM_micro_HlyD NHPM 57.2 97 0.0021 31.5 10.3 10 314-323 187-196 (421)
336 PRK15396 murein lipoprotein; P 57.0 66 0.0014 26.6 7.3 13 258-270 32-44 (78)
337 cd07627 BAR_Vps5p The Bin/Amph 56.8 1.3E+02 0.0028 28.2 10.3 31 241-271 105-135 (216)
338 PF03962 Mnd1: Mnd1 family; I 56.7 1E+02 0.0022 28.8 9.6 25 240-264 72-96 (188)
339 PF14988 DUF4515: Domain of un 56.5 1.7E+02 0.0037 27.9 11.1 48 274-321 151-198 (206)
340 COG3264 Small-conductance mech 56.5 71 0.0015 36.6 9.8 71 263-333 63-133 (835)
341 PF09789 DUF2353: Uncharacteri 56.4 1.2E+02 0.0026 31.1 10.6 31 269-299 69-99 (319)
342 PRK00409 recombination and DNA 56.3 1.7E+02 0.0038 33.0 12.8 43 251-293 520-562 (782)
343 KOG1962 B-cell receptor-associ 56.3 49 0.0011 32.1 7.5 34 265-298 158-191 (216)
344 KOG2077 JNK/SAPK-associated pr 56.3 55 0.0012 36.4 8.6 51 255-305 326-376 (832)
345 PRK11239 hypothetical protein; 56.2 17 0.00036 35.3 4.3 28 253-280 185-212 (215)
346 KOG2264 Exostosin EXT1L [Signa 56.2 36 0.00079 37.7 7.3 54 266-319 87-140 (907)
347 PF02388 FemAB: FemAB family; 56.1 65 0.0014 33.1 8.9 26 251-276 242-267 (406)
348 PF14282 FlxA: FlxA-like prote 56.0 57 0.0012 27.7 7.1 56 251-323 19-74 (106)
349 COG4238 Murein lipoprotein [Ce 55.9 71 0.0015 26.6 7.3 49 252-300 26-74 (78)
350 COG5509 Uncharacterized small 55.4 17 0.00038 29.0 3.6 26 251-276 25-50 (65)
351 PF14915 CCDC144C: CCDC144C pr 55.3 1.3E+02 0.0027 30.8 10.4 70 244-320 21-97 (305)
352 TIGR02680 conserved hypothetic 55.2 1.3E+02 0.0028 36.0 12.1 41 251-291 742-782 (1353)
353 TIGR01069 mutS2 MutS2 family p 55.1 2E+02 0.0043 32.5 13.0 40 252-291 516-555 (771)
354 PLN02939 transferase, transfer 54.8 2.2E+02 0.0048 33.4 13.4 63 239-301 151-248 (977)
355 PF08647 BRE1: BRE1 E3 ubiquit 54.8 1.3E+02 0.0027 25.2 11.7 69 251-326 3-71 (96)
356 KOG0971 Microtubule-associated 54.7 2.6E+02 0.0057 33.0 13.7 31 257-287 324-354 (1243)
357 PRK10803 tol-pal system protei 54.6 1E+02 0.0022 30.1 9.5 48 253-300 42-89 (263)
358 PF06698 DUF1192: Protein of u 54.6 36 0.00077 26.8 5.2 26 253-278 23-48 (59)
359 KOG0250 DNA repair protein RAD 54.3 1.8E+02 0.0039 34.3 12.6 78 252-329 373-455 (1074)
360 PF07426 Dynactin_p22: Dynacti 54.1 1.2E+02 0.0026 28.2 9.5 36 290-325 123-158 (174)
361 KOG0804 Cytoplasmic Zn-finger 54.0 88 0.0019 33.7 9.5 26 57-82 57-94 (493)
362 PRK09841 cryptic autophosphory 53.9 1.7E+02 0.0037 32.4 12.1 18 308-325 371-388 (726)
363 PF14916 CCDC92: Coiled-coil d 53.8 23 0.00049 28.1 4.0 30 253-282 5-38 (60)
364 PF10267 Tmemb_cc2: Predicted 53.7 1.8E+02 0.0039 30.6 11.6 98 252-356 242-348 (395)
365 PF12128 DUF3584: Protein of u 53.5 2.8E+02 0.0061 32.7 14.4 22 254-275 624-645 (1201)
366 PF04728 LPP: Lipoprotein leuc 53.5 54 0.0012 25.7 5.9 29 258-286 3-31 (56)
367 PF07798 DUF1640: Protein of u 53.4 1.8E+02 0.0039 26.5 10.8 21 253-273 75-95 (177)
368 PF08702 Fib_alpha: Fibrinogen 53.3 1.7E+02 0.0038 26.4 12.2 21 308-328 112-132 (146)
369 PLN02678 seryl-tRNA synthetase 53.2 85 0.0018 33.3 9.3 44 257-300 46-92 (448)
370 PHA03155 hypothetical protein; 53.1 1.1E+02 0.0024 27.2 8.5 23 275-297 11-33 (115)
371 PF06810 Phage_GP20: Phage min 52.9 1.8E+02 0.0039 26.4 10.9 62 252-313 28-92 (155)
372 PHA02557 22 prohead core prote 52.9 74 0.0016 31.9 8.3 42 267-308 143-184 (271)
373 PF10174 Cast: RIM-binding pro 52.8 95 0.0021 35.3 10.1 52 272-323 301-352 (775)
374 TIGR02231 conserved hypothetic 52.7 1.8E+02 0.004 30.6 11.7 46 269-321 128-173 (525)
375 PRK11448 hsdR type I restricti 52.6 71 0.0015 37.5 9.4 16 283-298 188-203 (1123)
376 PF12777 MT: Microtubule-bindi 52.6 62 0.0013 32.5 7.9 7 233-239 185-191 (344)
377 PF04899 MbeD_MobD: MbeD/MobD 52.4 1.2E+02 0.0027 24.5 9.6 35 268-302 24-58 (70)
378 cd07596 BAR_SNX The Bin/Amphip 52.3 1.7E+02 0.0037 26.0 10.7 69 246-324 112-187 (218)
379 PF13118 DUF3972: Protein of u 52.2 1.1E+02 0.0023 27.6 8.4 41 276-323 82-122 (126)
380 KOG0996 Structural maintenance 52.2 1.6E+02 0.0035 35.2 11.8 27 254-280 816-842 (1293)
381 KOG1937 Uncharacterized conser 52.1 1.5E+02 0.0032 32.2 10.7 80 240-319 275-378 (521)
382 PF05483 SCP-1: Synaptonemal c 52.1 1.5E+02 0.0032 33.6 11.1 79 246-324 603-685 (786)
383 TIGR00414 serS seryl-tRNA synt 51.9 2.1E+02 0.0045 29.8 11.8 46 255-300 41-90 (418)
384 PF10805 DUF2730: Protein of u 51.8 1.5E+02 0.0033 25.2 9.7 46 253-298 51-98 (106)
385 PF09728 Taxilin: Myosin-like 51.7 1.1E+02 0.0024 30.7 9.5 60 266-325 238-304 (309)
386 PRK12705 hypothetical protein; 51.7 2.9E+02 0.0062 30.0 13.1 46 253-298 90-135 (508)
387 PF03980 Nnf1: Nnf1 ; InterPr 51.5 1.1E+02 0.0023 25.6 8.1 33 281-320 75-107 (109)
388 PRK00106 hypothetical protein; 51.5 3.6E+02 0.0078 29.5 15.0 23 244-266 65-87 (535)
389 COG4942 Membrane-bound metallo 51.3 1.8E+02 0.0038 31.0 11.2 60 244-303 45-104 (420)
390 PRK00409 recombination and DNA 51.1 1.4E+02 0.0029 33.8 11.0 45 255-299 517-561 (782)
391 TIGR01010 BexC_CtrB_KpsE polys 51.0 77 0.0017 31.5 8.3 20 306-325 277-296 (362)
392 TIGR01005 eps_transp_fam exopo 50.9 1.6E+02 0.0035 32.3 11.4 20 306-325 375-394 (754)
393 PF08826 DMPK_coil: DMPK coile 50.9 1.1E+02 0.0023 24.2 7.4 38 283-320 22-59 (61)
394 PF01920 Prefoldin_2: Prefoldi 50.8 40 0.00087 27.2 5.3 32 252-283 63-94 (106)
395 PF09311 Rab5-bind: Rabaptin-l 50.5 12 0.00026 34.4 2.4 69 253-328 10-78 (181)
396 KOG1850 Myosin-like coiled-coi 50.2 1.2E+02 0.0027 31.5 9.5 65 260-325 111-175 (391)
397 PRK10929 putative mechanosensi 50.0 1.1E+02 0.0023 36.3 10.2 23 304-326 212-234 (1109)
398 PRK09841 cryptic autophosphory 50.0 86 0.0019 34.7 9.1 7 232-238 237-243 (726)
399 PTZ00007 (NAP-L) nucleosome as 49.9 21 0.00045 36.6 4.1 66 263-328 11-76 (337)
400 PRK00846 hypothetical protein; 49.6 1E+02 0.0022 25.5 7.3 21 262-282 10-30 (77)
401 PF14916 CCDC92: Coiled-coil d 49.6 35 0.00075 27.0 4.4 12 311-322 25-36 (60)
402 PHA03161 hypothetical protein; 49.5 1.6E+02 0.0035 27.3 9.3 66 246-321 49-114 (150)
403 TIGR01069 mutS2 MutS2 family p 49.4 1.5E+02 0.0032 33.4 11.0 44 255-298 512-555 (771)
404 KOG0239 Kinesin (KAR3 subfamil 49.2 2.7E+02 0.0058 31.2 12.7 41 254-294 223-263 (670)
405 PF08336 P4Ha_N: Prolyl 4-Hydr 49.2 1.3E+02 0.0029 26.0 8.5 28 251-278 22-49 (134)
406 KOG0243 Kinesin-like protein [ 49.1 2.1E+02 0.0045 33.8 12.1 55 249-303 446-500 (1041)
407 PF09763 Sec3_C: Exocyst compl 49.0 1.3E+02 0.0028 33.0 10.2 72 250-321 22-96 (701)
408 PRK11578 macrolide transporter 49.0 1.5E+02 0.0033 29.5 10.0 41 287-327 138-178 (370)
409 PRK14011 prefoldin subunit alp 48.8 83 0.0018 28.5 7.4 42 256-300 93-134 (144)
410 KOG0994 Extracellular matrix g 48.5 92 0.002 37.4 9.2 73 253-325 1203-1285(1758)
411 COG3166 PilN Tfp pilus assembl 48.3 86 0.0019 30.1 7.7 69 231-300 8-76 (206)
412 COG4026 Uncharacterized protei 48.3 1.8E+02 0.004 29.0 10.0 62 240-301 145-206 (290)
413 KOG3564 GTPase-activating prot 48.3 99 0.0022 33.7 8.8 64 245-308 40-107 (604)
414 COG1792 MreC Cell shape-determ 48.3 48 0.001 32.8 6.3 46 246-295 61-106 (284)
415 TIGR02971 heterocyst_DevB ABC 48.2 1.3E+02 0.0028 29.1 9.2 16 262-277 94-109 (327)
416 PF14932 HAUS-augmin3: HAUS au 48.1 2.7E+02 0.0058 27.0 11.8 38 251-288 68-105 (256)
417 COG1842 PspA Phage shock prote 48.0 2.7E+02 0.0058 27.0 11.7 71 255-325 56-131 (225)
418 PHA03162 hypothetical protein; 47.9 1.4E+02 0.003 27.3 8.4 21 275-295 16-36 (135)
419 KOG0612 Rho-associated, coiled 47.7 2E+02 0.0044 34.5 11.7 65 255-319 462-527 (1317)
420 TIGR02209 ftsL_broad cell divi 47.7 1.2E+02 0.0027 23.7 7.5 22 254-275 34-55 (85)
421 PF06785 UPF0242: Uncharacteri 47.6 3.2E+02 0.007 28.7 12.0 44 274-317 129-172 (401)
422 PRK10698 phage shock protein P 47.5 2.6E+02 0.0057 26.7 12.0 70 255-324 56-130 (222)
423 PHA02109 hypothetical protein 47.3 46 0.00099 31.9 5.6 30 248-277 190-219 (233)
424 PRK00295 hypothetical protein; 47.2 1.1E+02 0.0025 24.2 7.1 18 267-284 7-24 (68)
425 PF11629 Mst1_SARAH: C termina 47.1 56 0.0012 25.1 5.0 31 289-329 11-41 (49)
426 PF12795 MscS_porin: Mechanose 47.0 2.3E+02 0.005 26.8 10.5 17 309-325 194-210 (240)
427 PF11932 DUF3450: Protein of u 46.7 2.7E+02 0.0058 26.6 13.7 49 253-301 44-92 (251)
428 PF01166 TSC22: TSC-22/dip/bun 46.6 38 0.00083 26.8 4.2 16 309-324 30-45 (59)
429 KOG2010 Double stranded RNA bi 46.5 2.4E+02 0.0051 29.6 10.9 53 256-308 145-198 (405)
430 KOG0980 Actin-binding protein 46.5 3.2E+02 0.007 31.9 12.8 49 252-300 411-459 (980)
431 KOG1853 LIS1-interacting prote 46.5 3.3E+02 0.0073 27.7 12.8 66 252-327 46-111 (333)
432 PF13874 Nup54: Nucleoporin co 46.2 1.7E+02 0.0037 25.8 8.9 67 252-325 52-118 (141)
433 PRK14140 heat shock protein Gr 45.8 1.5E+02 0.0033 28.1 8.9 29 252-280 38-66 (191)
434 PF09325 Vps5: Vps5 C terminal 45.8 2.4E+02 0.0052 25.8 11.3 59 260-321 165-225 (236)
435 PRK04863 mukB cell division pr 45.7 4.5E+02 0.0097 32.3 14.6 17 253-269 316-332 (1486)
436 PF14661 HAUS6_N: HAUS augmin- 45.4 2.6E+02 0.0057 26.8 10.7 11 312-322 233-243 (247)
437 PF09789 DUF2353: Uncharacteri 45.3 3.6E+02 0.0078 27.7 12.2 26 257-282 78-103 (319)
438 PF12128 DUF3584: Protein of u 45.1 3.2E+02 0.0068 32.3 13.0 87 237-323 744-853 (1201)
439 KOG3584 cAMP response element 44.9 70 0.0015 32.8 6.8 27 272-298 312-338 (348)
440 KOG1962 B-cell receptor-associ 44.9 69 0.0015 31.1 6.6 38 263-300 149-186 (216)
441 PF06008 Laminin_I: Laminin Do 44.8 2.3E+02 0.005 27.2 10.2 60 240-299 40-100 (264)
442 KOG0999 Microtubule-associated 44.6 2E+02 0.0043 32.1 10.5 63 256-325 6-75 (772)
443 KOG4001 Axonemal dynein light 44.4 2.2E+02 0.0048 28.1 9.8 72 240-324 170-245 (259)
444 TIGR03017 EpsF chain length de 44.4 3.5E+02 0.0076 27.4 11.9 55 231-285 140-205 (444)
445 PRK14160 heat shock protein Gr 44.3 2E+02 0.0042 27.8 9.5 44 253-296 56-99 (211)
446 PF04899 MbeD_MobD: MbeD/MobD 44.3 1.4E+02 0.003 24.2 7.2 45 257-301 20-64 (70)
447 PF07246 Phlebovirus_NSM: Phle 44.1 2.5E+02 0.0054 28.2 10.4 67 258-326 168-235 (264)
448 PRK04778 septation ring format 44.1 4E+02 0.0087 28.7 12.8 27 247-273 313-339 (569)
449 PF09787 Golgin_A5: Golgin sub 44.0 2.1E+02 0.0045 30.5 10.5 58 243-300 238-302 (511)
450 PF10198 Ada3: Histone acetylt 43.7 1.4E+02 0.0031 26.6 7.9 53 266-318 34-89 (131)
451 PF07558 Shugoshin_N: Shugoshi 43.7 24 0.00052 26.1 2.6 30 266-295 15-44 (46)
452 TIGR03017 EpsF chain length de 43.5 2.6E+02 0.0056 28.3 10.8 20 306-325 341-360 (444)
453 PRK11281 hypothetical protein; 43.2 3.2E+02 0.0069 32.5 12.6 24 259-282 193-216 (1113)
454 cd07665 BAR_SNX1 The Bin/Amphi 43.1 2.6E+02 0.0056 27.3 10.2 27 247-273 25-51 (234)
455 KOG0978 E3 ubiquitin ligase in 42.8 1.3E+02 0.0029 33.9 9.1 68 253-321 575-642 (698)
456 PF05600 DUF773: Protein of un 42.7 1.6E+02 0.0034 31.8 9.5 51 251-301 432-482 (507)
457 KOG0964 Structural maintenance 42.7 1E+02 0.0023 36.2 8.4 49 253-301 274-322 (1200)
458 COG3132 Uncharacterized protei 42.7 27 0.00059 33.5 3.4 24 254-277 188-211 (215)
459 PRK00736 hypothetical protein; 42.5 1.5E+02 0.0032 23.6 7.1 18 267-284 7-24 (68)
460 PRK04325 hypothetical protein; 42.2 1.6E+02 0.0034 23.8 7.3 24 261-284 5-28 (74)
461 KOG2991 Splicing regulator [RN 42.1 1.7E+02 0.0037 29.7 8.9 72 257-328 216-306 (330)
462 PF07926 TPR_MLP1_2: TPR/MLP1/ 42.0 2.3E+02 0.0051 24.6 12.6 67 251-321 46-112 (132)
463 PF04340 DUF484: Protein of un 41.9 1.4E+02 0.003 28.0 8.0 43 272-314 40-82 (225)
464 COG1729 Uncharacterized protei 41.8 54 0.0012 32.6 5.4 28 253-281 58-85 (262)
465 KOG3433 Protein involved in me 41.7 2.7E+02 0.0058 26.9 9.8 26 252-277 82-107 (203)
466 PF14257 DUF4349: Domain of un 41.5 1E+02 0.0023 29.4 7.3 48 234-281 138-192 (262)
467 PLN02320 seryl-tRNA synthetase 41.2 2.2E+02 0.0048 30.8 10.3 31 250-280 92-122 (502)
468 PF11853 DUF3373: Protein of u 41.2 23 0.00049 38.1 3.0 23 252-274 32-54 (489)
469 PF11166 DUF2951: Protein of u 41.2 2.4E+02 0.0052 24.5 9.5 67 254-320 7-73 (98)
470 TIGR00606 rad50 rad50. This fa 41.1 2.6E+02 0.0056 33.2 11.6 75 253-327 824-901 (1311)
471 PF01486 K-box: K-box region; 41.0 99 0.0021 25.6 6.2 47 250-296 48-99 (100)
472 KOG4571 Activating transcripti 40.8 2.7E+02 0.006 28.4 10.2 38 287-325 249-287 (294)
473 PF05812 Herpes_BLRF2: Herpesv 40.6 40 0.00086 30.0 3.9 27 274-300 5-31 (118)
474 PRK11519 tyrosine kinase; Prov 40.5 2.6E+02 0.0056 31.0 11.0 20 306-325 369-388 (719)
475 PRK10963 hypothetical protein; 40.2 91 0.002 29.5 6.6 46 253-302 39-84 (223)
476 PF12507 HCMV_UL139: Human Cyt 40.0 85 0.0018 28.1 5.9 67 255-321 34-100 (121)
477 PF10359 Fmp27_WPPW: RNA pol I 39.9 1.2E+02 0.0025 32.1 7.9 85 222-326 149-233 (475)
478 PF09744 Jnk-SapK_ap_N: JNK_SA 39.5 3.1E+02 0.0067 25.3 11.5 28 271-298 88-115 (158)
479 PLN02320 seryl-tRNA synthetase 39.5 2.1E+02 0.0045 31.1 9.7 8 231-238 66-73 (502)
480 COG1382 GimC Prefoldin, chaper 39.4 94 0.002 27.7 6.0 83 240-325 20-109 (119)
481 PF10212 TTKRSYEDQ: Predicted 39.4 1.6E+02 0.0035 32.1 8.9 46 257-302 433-478 (518)
482 PF10779 XhlA: Haemolysin XhlA 39.3 1.5E+02 0.0032 23.3 6.7 45 255-299 3-47 (71)
483 PF13093 FTA4: Kinetochore com 39.3 56 0.0012 31.2 5.0 16 309-324 193-208 (213)
484 KOG0288 WD40 repeat protein Ti 39.3 2.2E+02 0.0047 30.6 9.6 48 254-301 9-56 (459)
485 PF08287 DASH_Spc19: Spc19; I 39.1 86 0.0019 28.6 6.0 26 251-276 75-100 (153)
486 PF14712 Snapin_Pallidin: Snap 38.9 2E+02 0.0044 23.0 9.5 25 253-277 16-40 (92)
487 TIGR02680 conserved hypothetic 38.9 6.2E+02 0.013 30.6 14.3 40 256-295 281-320 (1353)
488 PRK14158 heat shock protein Gr 38.8 2.1E+02 0.0046 27.2 8.7 23 255-277 44-66 (194)
489 KOG1029 Endocytic adaptor prot 38.6 2.4E+02 0.0052 32.8 10.2 39 240-278 475-513 (1118)
490 TIGR03007 pepcterm_ChnLen poly 38.6 3.3E+02 0.0072 28.1 10.9 70 252-321 311-383 (498)
491 PRK14143 heat shock protein Gr 38.6 2E+02 0.0044 28.1 8.8 56 253-308 69-124 (238)
492 COG1842 PspA Phage shock prote 38.6 3.2E+02 0.0068 26.5 10.0 64 250-314 91-154 (225)
493 COG4372 Uncharacterized protei 38.6 5.3E+02 0.012 27.7 13.8 90 235-324 193-283 (499)
494 PF13815 Dzip-like_N: Iguana/D 38.1 1.7E+02 0.0038 25.0 7.5 50 253-302 68-117 (118)
495 PF08702 Fib_alpha: Fibrinogen 38.1 1.2E+02 0.0026 27.4 6.7 53 251-303 82-135 (146)
496 PRK14139 heat shock protein Gr 38.0 2.2E+02 0.0048 26.9 8.6 56 253-308 34-89 (185)
497 PRK10476 multidrug resistance 38.0 2.6E+02 0.0057 27.5 9.7 65 261-325 82-146 (346)
498 PHA03011 hypothetical protein; 38.0 2.3E+02 0.0049 25.1 8.0 56 266-321 58-113 (120)
499 PRK14162 heat shock protein Gr 37.8 2.2E+02 0.0048 27.1 8.7 59 250-308 38-96 (194)
500 PF14282 FlxA: FlxA-like prote 37.6 2.6E+02 0.0055 23.8 8.4 64 265-335 19-86 (106)
No 1
>smart00338 BRLZ basic region leucin zipper.
Probab=98.90 E-value=6.3e-09 Score=79.98 Aligned_cols=56 Identities=39% Similarity=0.475 Sum_probs=49.6
Q ss_pred hhhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhh
Q 017286 233 ETKRAK-----QQFAQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMEN 288 (374)
Q Consensus 233 DpKRaK-----RqSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN 288 (374)
|+|+.+ |.+|+++|+||.+||.+||.+|+.|+.++..|..+|..|..+...|..+|
T Consensus 3 ~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 3 DEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667776 49999999999999999999999999999999999999877777776655
No 2
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=98.75 E-value=5.3e-08 Score=74.76 Aligned_cols=50 Identities=46% Similarity=0.595 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhh
Q 017286 239 QQFAQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMEN 288 (374)
Q Consensus 239 RqSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN 288 (374)
|++|+++|.||.+||.+||.+|..|+.++..|..++..|......|..||
T Consensus 14 R~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 14 REAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 69999999999999999999999999999999999999999888888877
No 3
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=98.36 E-value=2.1e-06 Score=64.28 Aligned_cols=47 Identities=40% Similarity=0.538 Sum_probs=41.7
Q ss_pred hhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 017286 233 ETKRAK----QQFAQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQ 279 (374)
Q Consensus 233 DpKRaK----RqSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~ 279 (374)
|+++.| |.+|+|||.||.+|+.+||..|+.|+.++..|..+|..|.+
T Consensus 3 ~~~~~rR~rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 3 EEKRERRERNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555 49999999999999999999999999999999999998865
No 4
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=97.85 E-value=0.00014 Score=70.41 Aligned_cols=71 Identities=30% Similarity=0.336 Sum_probs=65.0
Q ss_pred chhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHH
Q 017286 231 DTETKRAK-QQFAQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQE 301 (374)
Q Consensus 231 ~~DpKRaK-RqSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~ 301 (374)
.+|-|+.| |..||-+|.||+.-++|||..|..|..|+..|..+-..|+..+..|.++|.+|.++|+.+.|+
T Consensus 69 K~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~ 140 (292)
T KOG4005|consen 69 KVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQE 140 (292)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 35666666 899999999999999999999999999999999999999999999999999999999866654
No 5
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=97.51 E-value=0.00019 Score=75.81 Aligned_cols=62 Identities=32% Similarity=0.357 Sum_probs=53.5
Q ss_pred chhhhHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHH
Q 017286 231 DTETKRAK--------QQFAQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALK 292 (374)
Q Consensus 231 ~~DpKRaK--------RqSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK 292 (374)
.+|+|-.| |+||.-||.||+.|+.-||.+++.|..|+..|+.+=+.|.++...|..||..||
T Consensus 274 ~~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~k 343 (655)
T KOG4343|consen 274 GSDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLK 343 (655)
T ss_pred ccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccc
Confidence 57888766 599999999999999999999999999988888877777777777777887774
No 6
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=97.42 E-value=0.00022 Score=73.99 Aligned_cols=61 Identities=34% Similarity=0.507 Sum_probs=50.8
Q ss_pred chhhhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHH
Q 017286 231 DTETKRAKQ-----QFAQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESL 298 (374)
Q Consensus 231 ~~DpKRaKR-----qSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL 298 (374)
+-+-||++| +|||-||-||+.||.-||.+|..--+||.+|..+|..|+ .+|..|-++|.-|
T Consensus 247 EriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le-------~~N~sLl~qL~kl 312 (472)
T KOG0709|consen 247 ERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELE-------LSNRSLLAQLKKL 312 (472)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHh-------hccHHHHHHHHHH
Confidence 467899987 999999999999999999999999999999999998874 4555554444433
No 7
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=97.06 E-value=0.0013 Score=64.24 Aligned_cols=42 Identities=33% Similarity=0.500 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 017286 239 QQFAQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQ 280 (374)
Q Consensus 239 RqSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~ 280 (374)
|+.|-|+|.|||+.|++||.+|..|..++..|..++..|..+
T Consensus 215 reaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~ 256 (279)
T KOG0837|consen 215 REAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQ 256 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHH
Confidence 499999999999999999999999999999999988887443
No 8
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=96.85 E-value=0.0038 Score=53.57 Aligned_cols=50 Identities=34% Similarity=0.471 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHH
Q 017286 251 QYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQ 300 (374)
Q Consensus 251 qYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q 300 (374)
.-|.+||.++..|..++..|+.+|..|-+++..|.+||..|+.+|..+++
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35789999999999999999999999999999999999999999998887
No 9
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=96.71 E-value=0.0054 Score=53.03 Aligned_cols=49 Identities=33% Similarity=0.436 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHH
Q 017286 252 YIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQ 300 (374)
Q Consensus 252 YI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q 300 (374)
-+.+||.++..|..+...|+.+|..|-+++..|..||..|+.+|..+++
T Consensus 9 ~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 9 ALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4789999999999999999999999999999999999999999998754
No 10
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=96.64 E-value=0.0095 Score=59.11 Aligned_cols=51 Identities=29% Similarity=0.310 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHH
Q 017286 240 QFAQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQE-QLIKCLEHEV 311 (374)
Q Consensus 240 qSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~-~~lkda~~E~ 311 (374)
..|.|.|.||....++|+...+. |..+|.+||.|+..|+.+ .-||+++.|.
T Consensus 237 ~AAtRYRqKkRae~E~l~ge~~~---------------------Le~rN~~LK~qa~~lerEI~ylKqli~e~ 288 (294)
T KOG4571|consen 237 AAATRYRQKKRAEKEALLGELEG---------------------LEKRNEELKDQASELEREIRYLKQLILEV 288 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45999999999999999888774 566777888777665543 3333333333
No 11
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=96.27 E-value=0.037 Score=44.17 Aligned_cols=60 Identities=27% Similarity=0.281 Sum_probs=36.1
Q ss_pred HHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 263 LQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVV 322 (374)
Q Consensus 263 LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l 322 (374)
|++++++|..++..+.++....-.+|+.|...=.....+...+...+..|+.|++.|+.=
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555555555556666777777777777763
No 12
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=96.22 E-value=0.1 Score=41.97 Aligned_cols=66 Identities=30% Similarity=0.327 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 251 QYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRL 319 (374)
Q Consensus 251 qYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RL 319 (374)
.-+.+||.||+.+=..++.|.-++..|..++..|..+|.+|+...+.|.++. .+.++.|..=+++|
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~---~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQER---NAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhh
Confidence 4578999999999999999999999988888888888888888777777542 33444444444444
No 13
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=96.19 E-value=0.14 Score=44.99 Aligned_cols=83 Identities=17% Similarity=0.186 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 243 QRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVV 322 (374)
Q Consensus 243 qRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l 322 (374)
-.++.|=+..-++|+.++..|..++..|...+..|..+...+.-|...++.+...+..+..-...-...++.|++||+..
T Consensus 44 l~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~ 123 (151)
T PF11559_consen 44 LQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQ 123 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666777777777777777777777777777777777777777777777777666666677788888888876
Q ss_pred HHH
Q 017286 323 YQQ 325 (374)
Q Consensus 323 ~~q 325 (374)
.++
T Consensus 124 ~~~ 126 (151)
T PF11559_consen 124 LQQ 126 (151)
T ss_pred HHH
Confidence 665
No 14
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=95.82 E-value=0.026 Score=49.10 Aligned_cols=46 Identities=30% Similarity=0.387 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHH
Q 017286 252 YIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLES 297 (374)
Q Consensus 252 YI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~a 297 (374)
-+++||.+|-+|-+|+..|+..+..|-+++..|++||..|+.||..
T Consensus 9 ~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 9 QVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 3789999999999999999999999999999999999999999988
No 15
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=95.76 E-value=0.2 Score=44.00 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 017286 306 CLEHEVLEREIGRLRVVYQQQQQ 328 (374)
Q Consensus 306 da~~E~L~~Ei~RLr~l~~qqq~ 328 (374)
.-..|+|+..|.-||.+|..|-+
T Consensus 95 ~E~veEL~~Dv~DlK~myr~Qi~ 117 (120)
T PF12325_consen 95 SEEVEELRADVQDLKEMYREQID 117 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34689999999999999999865
No 16
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=95.65 E-value=0.00079 Score=55.50 Aligned_cols=53 Identities=34% Similarity=0.418 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHH
Q 017286 239 QQFAQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKAL 291 (374)
Q Consensus 239 RqSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~L 291 (374)
|.+|+++|.||+.++.+||..+..|+.+...|..++..+.++...|...+..|
T Consensus 39 R~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~~~lk~~~~~L 91 (92)
T PF03131_consen 39 RGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQERDELKRKLEQL 91 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 59999999999999999999999999999998888888776665555444443
No 17
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=95.54 E-value=0.2 Score=40.00 Aligned_cols=67 Identities=21% Similarity=0.244 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 255 ELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRV 321 (374)
Q Consensus 255 ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~ 321 (374)
.||..|.+|++.+..+..++...+..+..|+.|+...-.+|...-.+..=--...|+|++|++.+|.
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r~ 68 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELRA 68 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5899999999999999999999999999999999888888887776655555578999999888763
No 18
>PRK10884 SH3 domain-containing protein; Provisional
Probab=95.52 E-value=0.13 Score=48.69 Aligned_cols=56 Identities=18% Similarity=0.127 Sum_probs=39.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 261 QSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREI 316 (374)
Q Consensus 261 q~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei 316 (374)
+.+..+.++|..+++..++....|..||.+|+.+|+.+..+...-++.++.+++++
T Consensus 114 ~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 114 NTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666667777777777777888888888888887776655556666666555
No 19
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=95.30 E-value=0.044 Score=54.80 Aligned_cols=41 Identities=27% Similarity=0.425 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 017286 239 QQFAQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQ 279 (374)
Q Consensus 239 RqSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~ 279 (374)
|+.|+-=|-+|+.||.=||.+|-+|++.|.+|-++|..|..
T Consensus 300 REAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKe 340 (348)
T KOG3584|consen 300 REAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKE 340 (348)
T ss_pred HHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHH
Confidence 79999999999999999999999999999999998888743
No 20
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.79 E-value=0.27 Score=46.55 Aligned_cols=69 Identities=26% Similarity=0.326 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 251 QYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVY 323 (374)
Q Consensus 251 qYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~ 323 (374)
.-|.+|+-.-+.|..|++.|...|..++..+..|..|+..|+.++.++.|-.++-. +|+.|++.||...
T Consensus 8 ~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK----~l~eEledLk~~~ 76 (193)
T PF14662_consen 8 SCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAK----ALEEELEDLKTLA 76 (193)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999965555443 4556666666543
No 21
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=94.53 E-value=0.74 Score=43.52 Aligned_cols=79 Identities=24% Similarity=0.251 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhH----HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017286 251 QYIAELERNVQSLQAEGTEVSAELEFLNQQNL----ILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQQ 326 (374)
Q Consensus 251 qYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~----~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~qq 326 (374)
.|...||.-++.|+.+...+..+|..+...+. ....+-+.|..+-..+.....--++....|+.||.+||.-...+
T Consensus 136 ~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~ 215 (221)
T PF05700_consen 136 IHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAEL 215 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999999999975433 33444557788888888887777888999999999999877665
Q ss_pred hhc
Q 017286 327 QQQ 329 (374)
Q Consensus 327 q~~ 329 (374)
+++
T Consensus 216 ~~~ 218 (221)
T PF05700_consen 216 KEN 218 (221)
T ss_pred hcc
Confidence 553
No 22
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=94.41 E-value=0.37 Score=52.36 Aligned_cols=44 Identities=30% Similarity=0.397 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHH
Q 017286 251 QYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQR 294 (374)
Q Consensus 251 qYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~r 294 (374)
.-|.+||.+|+.|+.||..|..+|..|+....+|..+=..++.+
T Consensus 422 ~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~ 465 (652)
T COG2433 422 KRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRRE 465 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667778888888888888888777776666666555444433
No 23
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.15 E-value=0.8 Score=37.46 Aligned_cols=29 Identities=28% Similarity=0.260 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 017286 251 QYIAELERNVQSLQAEGTEVSAELEFLNQ 279 (374)
Q Consensus 251 qYI~ELErkVq~LQ~E~a~Ls~~i~~L~~ 279 (374)
.-++.||.||+.-=..++-|.-+|..|.+
T Consensus 4 Ev~ekLE~KiqqAvdTI~LLQmEieELKE 32 (79)
T COG3074 4 EVFEKLEAKVQQAIDTITLLQMEIEELKE 32 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788877544444333333333333
No 24
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=93.67 E-value=0.59 Score=37.68 Aligned_cols=51 Identities=24% Similarity=0.272 Sum_probs=27.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 261 QSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQ 325 (374)
Q Consensus 261 q~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~q 325 (374)
..|+..+..+-..|+.|+.+...|..+|..|+ -.++.|+.|.++||.=+..
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~--------------~e~~~L~~en~~L~~e~~~ 57 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNELK--------------EENEELKEENEQLKQERNA 57 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--------------HHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555544444444444444 2455666666666644333
No 25
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=93.64 E-value=0.47 Score=50.20 Aligned_cols=67 Identities=30% Similarity=0.282 Sum_probs=37.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHH-HHH-------HHHHHHHHHHHHHHHHHH
Q 017286 259 NVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLI-KCL-------EHEVLEREIGRLRVVYQQ 325 (374)
Q Consensus 259 kVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~l-kda-------~~E~L~~Ei~RLr~l~~q 325 (374)
.|.+|=.++.+|..++..|..++..|..||..|++|..++.++-.- -++ ..+.|+.|+++|+.+.++
T Consensus 60 TlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~ 134 (472)
T TIGR03752 60 TLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQ 134 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555556666666666667777777777776666654111 111 344555555555555444
No 26
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=93.57 E-value=0.75 Score=43.61 Aligned_cols=42 Identities=26% Similarity=0.366 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHH
Q 017286 254 AELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRL 295 (374)
Q Consensus 254 ~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL 295 (374)
--|+.+|++||.|+..|..+...++.+...|.++|..|+-+|
T Consensus 98 q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 98 QSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence 457889999999999999999999999999999999999988
No 27
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=93.29 E-value=1.5 Score=38.53 Aligned_cols=71 Identities=28% Similarity=0.306 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 251 QYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQ 325 (374)
Q Consensus 251 qYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~q 325 (374)
+-|+.|...|..|+.|++.|..+++.|..++..|..|=..|....+.+...+ ...+.|+.|+..|..-|..
T Consensus 16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~----~~~~~L~~el~~l~~ry~t 86 (120)
T PF12325_consen 16 QLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALK----KEVEELEQELEELQQRYQT 86 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 4456666667777777777777777777666666666666655555553322 2345666666666665553
No 28
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=93.18 E-value=1.2 Score=36.10 Aligned_cols=59 Identities=25% Similarity=0.354 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhHH--------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQQNLI--------LSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQ 324 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~--------L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~ 324 (374)
+-|.|..+..|+.||=.|+-+|-+|.+.... +..||.+||.. .+.|++|+++++.+..
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve--------------~~~L~~el~~~~~~l~ 67 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVE--------------VESLKRELQEKKKLLK 67 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH
Confidence 4588999999999999999999999876553 33444444444 4555566666666555
Q ss_pred H
Q 017286 325 Q 325 (374)
Q Consensus 325 q 325 (374)
+
T Consensus 68 ~ 68 (75)
T PF07989_consen 68 E 68 (75)
T ss_pred H
Confidence 4
No 29
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=92.79 E-value=1.4 Score=36.45 Aligned_cols=42 Identities=29% Similarity=0.245 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHH
Q 017286 252 YIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQ 293 (374)
Q Consensus 252 YI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~ 293 (374)
-++.||.||+..=-+++-|.-+|..|..++..|..|+..++.
T Consensus 5 vleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~ 46 (79)
T PRK15422 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQH 46 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467888888876666655555555555555555554444333
No 30
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.63 E-value=1.5 Score=43.44 Aligned_cols=80 Identities=19% Similarity=0.123 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 017286 246 RVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQE-QLIKCLEHEVLEREIGRLRVVYQ 324 (374)
Q Consensus 246 R~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~-~~lkda~~E~L~~Ei~RLr~l~~ 324 (374)
...+-.-|.+|+..++-+|+|+..|-.+|..++.+...+..|+.+++..|+.|.++ +.+++-+.+.-+.=-.|+|.+|.
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~ 112 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQV 112 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455668889999999999999999999999999999999999999999988876 55555554444444468888775
Q ss_pred H
Q 017286 325 Q 325 (374)
Q Consensus 325 q 325 (374)
.
T Consensus 113 n 113 (265)
T COG3883 113 N 113 (265)
T ss_pred c
Confidence 4
No 31
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=92.59 E-value=0.41 Score=46.78 Aligned_cols=40 Identities=23% Similarity=0.347 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 017286 240 QFAQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQ 279 (374)
Q Consensus 240 qSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~ 279 (374)
..|+|||.+..+-..|+.+||..|+.|+..|..+|..|++
T Consensus 204 ~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~ 243 (269)
T KOG3119|consen 204 EAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKK 243 (269)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888888888888777777766666665533
No 32
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=92.58 E-value=1.5 Score=36.83 Aligned_cols=58 Identities=31% Similarity=0.364 Sum_probs=40.6
Q ss_pred HHHHhhHHHHHHHHHHHHH------hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 262 SLQAEGTEVSAELEFLNQQ------NLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRV 321 (374)
Q Consensus 262 ~LQ~E~a~Ls~~i~~L~~~------~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~ 321 (374)
.|..|+..|..+|..|+.+ -+.-.+||..|+..+..+..-. ..+..|++-.||..||.
T Consensus 21 ~~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~--~~gerE~l~~eis~L~~ 84 (86)
T PF12711_consen 21 YLEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFY--VEGEREMLLQEISELRD 84 (86)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHh
Confidence 3445556666666666532 3455688988888888877655 56678889999988886
No 33
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=92.51 E-value=5.3 Score=39.05 Aligned_cols=86 Identities=23% Similarity=0.247 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH---------HHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 017286 240 QFAQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLN---------QQNLILSMENKALKQRLESLAQEQLIKCLEHE 310 (374)
Q Consensus 240 qSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~---------~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E 310 (374)
.-+.+.-+-+..-+.+||..|-.++.++..++.++..++ ++...|.-|=..+|.|+.+|+.+..=-....+
T Consensus 41 e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~ 120 (239)
T COG1579 41 EALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIE 120 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445556666666666666666666666666554 23344555555556666666555433333445
Q ss_pred HHHHHHHHHHHHHHH
Q 017286 311 VLEREIGRLRVVYQQ 325 (374)
Q Consensus 311 ~L~~Ei~RLr~l~~q 325 (374)
.|++||.-|+--...
T Consensus 121 ~l~~~i~~l~~~~~~ 135 (239)
T COG1579 121 KLEKEIEDLKERLER 135 (239)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555544444433
No 34
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=92.50 E-value=1.6 Score=48.84 Aligned_cols=78 Identities=23% Similarity=0.307 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhh
Q 017286 250 LQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLE-HEVLEREIGRLRVVYQQQQQ 328 (374)
Q Consensus 250 lqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~-~E~L~~Ei~RLr~l~~qqq~ 328 (374)
-..|..|-.++++++.|++.|+-+|-.|+.+..+-+ +-+.|-.|-+.....+++-.+- .-.|++|++|||.|+.--.+
T Consensus 133 e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~-~E~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l~rk~lp 211 (769)
T PF05911_consen 133 EAEIEDLMARLESTEKENSSLKYELHVLSKELEIRN-EEREYSRRAAEAASKQHLESVKKIAKLEAECQRLRALVRKKLP 211 (769)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 345567777888888888888888888777665543 3366666666666666655443 56799999999999987555
No 35
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=92.48 E-value=0.72 Score=38.09 Aligned_cols=48 Identities=27% Similarity=0.306 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHH
Q 017286 254 AELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQE 301 (374)
Q Consensus 254 ~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~ 301 (374)
.+|.+.+..||.....|..+|.....++..|..||.-|..=|.+|...
T Consensus 19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~ 66 (80)
T PF10224_consen 19 EELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSS 66 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567789999999999999999999999999999999999999998754
No 36
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=92.40 E-value=0.45 Score=37.55 Aligned_cols=51 Identities=22% Similarity=0.186 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHH
Q 017286 251 QYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQE 301 (374)
Q Consensus 251 qYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~ 301 (374)
.-|.+||.++..++..+.+|+..|+..+++-..|..+-..|..||.++...
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~~ 54 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELEDP 54 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 358899999999999999999999999999999999999999999988743
No 37
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=92.22 E-value=0.51 Score=49.94 Aligned_cols=55 Identities=13% Similarity=0.184 Sum_probs=42.2
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHH
Q 017286 242 AQRSRVRKLQ-YIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLE 296 (374)
Q Consensus 242 AqRSR~RKlq-YI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~ 296 (374)
.+.|++--.| -++|||.++..|+.|...|+.+...+++.-..|..||..|+.+++
T Consensus 66 VnqSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 66 VRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444 578899999999888888888888888888888888888888773
No 38
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=92.21 E-value=1.2 Score=41.15 Aligned_cols=59 Identities=27% Similarity=0.316 Sum_probs=40.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 259 NVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQ 324 (374)
Q Consensus 259 kVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~ 324 (374)
.++.|+.|+..|..+++.|++++..|..||..|+.++..++.+ +++|..=+.|-|.+..
T Consensus 98 ~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eD-------Y~~L~~Im~RARkl~~ 156 (161)
T TIGR02894 98 SDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEED-------YQTLIDIMDRARKLAV 156 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHh
Confidence 3566667777777777777777777777777777777666663 5566666666666543
No 39
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=92.18 E-value=2.6 Score=46.06 Aligned_cols=87 Identities=26% Similarity=0.282 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhH---HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 239 QQFAQRSRVRKLQ-YIAELERNVQSLQAEGTEVSAELEFLNQQNL---ILSMENKALKQRLESLAQEQLIKCLEHEVLER 314 (374)
Q Consensus 239 RqSAqRSR~RKlq-YI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~---~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~ 314 (374)
|..+.+.++-+++ .+.+|++.+..|+.|+..|..++..+.+.-. ...-|=.++..+|..|+.+..-+.-.-|.|++
T Consensus 423 ~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~ 502 (652)
T COG2433 423 RIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELER 502 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666665554 6888888888888888888888888865533 23334444567888888888888889999999
Q ss_pred HHHHHHHHHHH
Q 017286 315 EIGRLRVVYQQ 325 (374)
Q Consensus 315 Ei~RLr~l~~q 325 (374)
++.+||.++--
T Consensus 503 ~l~~l~k~~~l 513 (652)
T COG2433 503 KLAELRKMRKL 513 (652)
T ss_pred HHHHHHHHHhh
Confidence 99999977653
No 40
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=92.14 E-value=0.77 Score=42.33 Aligned_cols=48 Identities=33% Similarity=0.410 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQ 300 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q 300 (374)
|.+|+..+..|+.++..|..+|.........|.-|...|.+.+..++.
T Consensus 118 l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~ 165 (194)
T PF08614_consen 118 LAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEE 165 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444433333
No 41
>PRK02119 hypothetical protein; Provisional
Probab=91.91 E-value=0.7 Score=37.17 Aligned_cols=46 Identities=17% Similarity=0.092 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHH
Q 017286 252 YIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLES 297 (374)
Q Consensus 252 YI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~a 297 (374)
-|.+||.+|-.++..+.+|+..|+..+++-..|..+-..|+.||..
T Consensus 10 Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 10 RIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556666666666666666666666555555555554444444444
No 42
>PRK11637 AmiB activator; Provisional
Probab=91.82 E-value=3.7 Score=41.98 Aligned_cols=56 Identities=11% Similarity=0.076 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHH
Q 017286 246 RVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQE 301 (374)
Q Consensus 246 R~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~ 301 (374)
...+.+.|.+++.++..++.++..|..+|..++++...+..+=..+..+|+.++.+
T Consensus 56 i~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~e 111 (428)
T PRK11637 56 IAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNAS 111 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555555555555555555555555555555555543
No 43
>PRK00295 hypothetical protein; Provisional
Probab=91.77 E-value=0.9 Score=36.05 Aligned_cols=47 Identities=19% Similarity=0.118 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLA 299 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~ 299 (374)
|.+||.+|-.++..+.+|+..|+..+++-..|..+=..|..||..+.
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 89999999999999999999988888777777666666666665543
No 44
>PRK11637 AmiB activator; Provisional
Probab=91.73 E-value=2.6 Score=43.06 Aligned_cols=71 Identities=17% Similarity=0.104 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVY 323 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~ 323 (374)
|.+++.+++.++.+...+..+|..++++-..+..+=..+..+|+.++++.--.+...+.++++|..++..+
T Consensus 56 i~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l 126 (428)
T PRK11637 56 IAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444433333333333444443333333
No 45
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=91.71 E-value=3.2 Score=41.51 Aligned_cols=79 Identities=25% Similarity=0.254 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 243 QRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRV 321 (374)
Q Consensus 243 qRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~ 321 (374)
..-..+.++.+.+||.....|..|...|..++..|+++-...-.+.+.++.++..+.++...-.+..+.+..++.+||.
T Consensus 56 e~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 56 EQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455556666666666666666666666666665555555666666666666666655555566666666666654
No 46
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=91.69 E-value=0.74 Score=41.32 Aligned_cols=73 Identities=33% Similarity=0.383 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHH--HHHHHHhHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 017286 251 QYIAELERNVQSLQAEGTEVSAEL--EFLNQQNLILSMENKALKQRLESLAQE-QLIKCLEHEVLEREIGRLRVVY 323 (374)
Q Consensus 251 qYI~ELErkVq~LQ~E~a~Ls~~i--~~L~~~~~~L~~EN~~LK~rL~aL~q~-~~lkda~~E~L~~Ei~RLr~l~ 323 (374)
..+.+|+..+..|++|.+.|...+ ..|......|..|+.+|..||+.|... ..+-....+.+.++..+++..+
T Consensus 86 ~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~k~w 161 (169)
T PF07106_consen 86 EELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEYKKWRKEW 161 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777765 456677888999999999999998864 3334445556666666655543
No 47
>PRK04325 hypothetical protein; Provisional
Probab=91.64 E-value=0.79 Score=36.92 Aligned_cols=46 Identities=20% Similarity=0.133 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESL 298 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL 298 (374)
|.+||.+|-.++..+.+|+..|+..+++-..|..+=+.|..||..+
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8899999999999999988888887777766666555555555554
No 48
>PRK00736 hypothetical protein; Provisional
Probab=91.15 E-value=1.2 Score=35.42 Aligned_cols=47 Identities=26% Similarity=0.185 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHH
Q 017286 252 YIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESL 298 (374)
Q Consensus 252 YI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL 298 (374)
.|.+||.+|-.++..+.+|+..|+.-+++-..|..+=..|..||..+
T Consensus 6 Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00736 6 RLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSL 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 38899999999999999998888887777666665555555555543
No 49
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=91.06 E-value=6 Score=37.29 Aligned_cols=53 Identities=15% Similarity=0.102 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHH
Q 017286 244 RSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLE 296 (374)
Q Consensus 244 RSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~ 296 (374)
.........+.+++.++..|+.++..+..+|....+....+..++...+..|.
T Consensus 56 ~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 56 LEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555677777777777777777777777777777777777666666655
No 50
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=90.75 E-value=4.5 Score=39.07 Aligned_cols=75 Identities=17% Similarity=0.139 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQQQ 327 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~qqq 327 (374)
...|+..+..|+.++..+..++......+..|..+...|+..|........--+...+.|+.||..|+.+|.+.-
T Consensus 70 ka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi 144 (312)
T PF00038_consen 70 KARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEI 144 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 355666667777777777777777777777777888888877777766666667778999999999999988743
No 51
>PRK02793 phi X174 lysis protein; Provisional
Probab=90.57 E-value=1.3 Score=35.44 Aligned_cols=48 Identities=17% Similarity=0.142 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHH
Q 017286 251 QYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESL 298 (374)
Q Consensus 251 qYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL 298 (374)
+-|.+||.+|-.++..+.+|+..|+..+++-..|..+=+.|+.||..+
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 357788888888888888888777777666666655555555555544
No 52
>PRK10884 SH3 domain-containing protein; Provisional
Probab=90.06 E-value=4 Score=38.75 Aligned_cols=62 Identities=15% Similarity=0.111 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 251 QYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVL 312 (374)
Q Consensus 251 qYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L 312 (374)
+...||+.+|..+..++.+|..+-..|.++...+..|+..|+.+++.+....+++-.++-.+
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~~Gg~ 179 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQWFMYGGG 179 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchH
Confidence 34445555555555555555555555555555555555555555555555555544444333
No 53
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=90.02 E-value=7.5 Score=35.07 Aligned_cols=78 Identities=19% Similarity=0.240 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 017286 251 QYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLI-------KCLEHEVLEREIGRLRVVY 323 (374)
Q Consensus 251 qYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~l-------kda~~E~L~~Ei~RLr~l~ 323 (374)
+++.+|+.++..++.+...+......+.+.......+-..++..++.+..+..- ....-+.++.++.+++..+
T Consensus 95 ~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (191)
T PF04156_consen 95 EELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENL 174 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555444444444433333333333333333333332111 1122344555555665555
Q ss_pred HHhhh
Q 017286 324 QQQQQ 328 (374)
Q Consensus 324 ~qqq~ 328 (374)
+++++
T Consensus 175 ~~l~~ 179 (191)
T PF04156_consen 175 QQLEE 179 (191)
T ss_pred HHHHH
Confidence 55443
No 54
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=89.95 E-value=2.1 Score=42.07 Aligned_cols=63 Identities=24% Similarity=0.142 Sum_probs=40.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccccCCCCccchhhh
Q 017286 282 LILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQQQQQQPPQKPSSSHRRTSSRDLDSQF 351 (374)
Q Consensus 282 ~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~qqq~~~~q~~~~~~~~~~~s~~~~~qf 351 (374)
..|..||.+||.++..|.++.+. ..+.|++|-+|||.++.-+.+..... ..+ |-.+++.+.-+
T Consensus 69 ~~l~~EN~~Lr~e~~~l~~~~~~---~~~~l~~EN~rLr~LL~~~~~~~~~~-i~A---~Vi~r~~~~~~ 131 (283)
T TIGR00219 69 NNLEYENYKLRQELLKKNQQLEI---LTQNLKQENVRLRELLNSPLSSDEYK-ISA---EVIYLNYDNYS 131 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCcccccCCc-eEE---EEEEeCCCccc
Confidence 44678889998888877443332 34559999999999998876532222 344 44455554433
No 55
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=89.94 E-value=1.7 Score=34.68 Aligned_cols=39 Identities=18% Similarity=0.266 Sum_probs=17.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHH
Q 017286 259 NVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLES 297 (374)
Q Consensus 259 kVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~a 297 (374)
..+.|+.||..|..++..+..++..|...|..-+.||++
T Consensus 15 ~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEa 53 (65)
T TIGR02449 15 YLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEA 53 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555554444444444444444444433
No 56
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=89.80 E-value=4.5 Score=39.10 Aligned_cols=84 Identities=20% Similarity=0.129 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 241 FAQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLR 320 (374)
Q Consensus 241 SAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr 320 (374)
.+..+=...-.+|.|++.....|..|-.....+|....++...|...=+.++..-............+...|+.||.+||
T Consensus 22 ~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R 101 (230)
T PF10146_consen 22 QEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELR 101 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445558899999999999999999999999999999998888888888887777777777778999999999999
Q ss_pred HHHH
Q 017286 321 VVYQ 324 (374)
Q Consensus 321 ~l~~ 324 (374)
.-|.
T Consensus 102 ~e~l 105 (230)
T PF10146_consen 102 KEYL 105 (230)
T ss_pred HHHc
Confidence 8753
No 57
>PRK00846 hypothetical protein; Provisional
Probab=89.63 E-value=1.8 Score=35.55 Aligned_cols=49 Identities=18% Similarity=0.077 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHH
Q 017286 251 QYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLA 299 (374)
Q Consensus 251 qYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~ 299 (374)
+.|.+||.+|-..+..+.+|+..|+..++.-..|...=..|+.||.+++
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4577777777777777777777777766666666555555555555544
No 58
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=89.61 E-value=6 Score=41.92 Aligned_cols=72 Identities=26% Similarity=0.181 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHH------------------HHHHH---HHHH
Q 017286 252 YIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQE------------------QLIKC---LEHE 310 (374)
Q Consensus 252 YI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~------------------~~lkd---a~~E 310 (374)
.++-|+.+||.|..|++.|...++.|.-....|..|-..+-++|+++.-+ ..-|+ -+.|
T Consensus 298 e~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELie 377 (502)
T KOG0982|consen 298 EKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIE 377 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 46778899999999999999999999888888877765555555544322 11111 2567
Q ss_pred HHHHHHHHHHHHH
Q 017286 311 VLEREIGRLRVVY 323 (374)
Q Consensus 311 ~L~~Ei~RLr~l~ 323 (374)
.|.+|+++||..-
T Consensus 378 elrkelehlr~~k 390 (502)
T KOG0982|consen 378 ELRKELEHLRRRK 390 (502)
T ss_pred HHHHHHHHHHHHH
Confidence 7888888887643
No 59
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=89.47 E-value=3.9 Score=34.75 Aligned_cols=63 Identities=24% Similarity=0.376 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHhhHHH--HHHHHHHHHHhHHHHHhhHHHHHHHHHHHHH
Q 017286 239 QQFAQRSRVRKL-QYIAELERNVQSLQAEGTEV--SAELEFLNQQNLILSMENKALKQRLESLAQE 301 (374)
Q Consensus 239 RqSAqRSR~RKl-qYI~ELErkVq~LQ~E~a~L--s~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~ 301 (374)
|..|-|.++-++ +-+.+++++|+.|+++...| ...|..|+-.-..|.-+=++|..+|+.+.++
T Consensus 29 ~~~a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~ 94 (106)
T PF10805_consen 29 RTYAKREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQ 94 (106)
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344555555555 55666788888888888888 8888888888888888888888888888765
No 60
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=89.44 E-value=7.9 Score=34.06 Aligned_cols=84 Identities=24% Similarity=0.234 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHH-------HHHHHHHHHHHHHHHH----H
Q 017286 240 QFAQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKAL-------KQRLESLAQEQLIKCL----E 308 (374)
Q Consensus 240 qSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~L-------K~rL~aL~q~~~lkda----~ 308 (374)
+.....-.++..-+..|+..|+.|+.+++.+..++..++.....|..+++.+ |..++-+....+...+ .
T Consensus 55 e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e 134 (151)
T PF11559_consen 55 EDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHE 134 (151)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344445555555555555555555444444444444444333 3333333322111111 2
Q ss_pred HHHHHHHHHHHHHHH
Q 017286 309 HEVLEREIGRLRVVY 323 (374)
Q Consensus 309 ~E~L~~Ei~RLr~l~ 323 (374)
...-..||++|+.-+
T Consensus 135 ~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 135 LRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHh
Confidence 233445788887654
No 61
>PRK04406 hypothetical protein; Provisional
Probab=89.36 E-value=1.8 Score=35.05 Aligned_cols=36 Identities=14% Similarity=0.037 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHh
Q 017286 252 YIAELERNVQSLQAEGTEVSAELEFLNQQNLILSME 287 (374)
Q Consensus 252 YI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~E 287 (374)
-|.+||.++-.++..+.+|+..|+..+++-..|..+
T Consensus 12 Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~q 47 (75)
T PRK04406 12 RINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQ 47 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555555555544444444333
No 62
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=89.19 E-value=4.6 Score=38.77 Aligned_cols=48 Identities=31% Similarity=0.285 Sum_probs=36.6
Q ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 017286 278 NQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQQQQQ 329 (374)
Q Consensus 278 ~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~qqq~~ 329 (374)
-.....|..||.+||.+++.|+.+.. ..++|++|-++||.+..-....
T Consensus 68 ~~~~~~l~~en~~L~~e~~~l~~~~~----~~~~l~~en~~L~~lL~~~~~~ 115 (276)
T PRK13922 68 LASLFDLREENEELKKELLELESRLQ----ELEQLEAENARLRELLNLKESL 115 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCcccC
Confidence 34556788899999998888887654 3467899999999988775543
No 63
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=89.12 E-value=3.3 Score=41.85 Aligned_cols=63 Identities=29% Similarity=0.359 Sum_probs=48.7
Q ss_pred HHHHHHHHH---HHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 254 AELERNVQS---LQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVY 323 (374)
Q Consensus 254 ~ELErkVq~---LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~ 323 (374)
.||++|... .|.|++.|-++|..|++....++.||-+|.+.|.+... -+..|..|+.-|+..|
T Consensus 220 eELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske-------~Q~~L~aEL~elqdkY 285 (306)
T PF04849_consen 220 EELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKE-------SQRQLQAELQELQDKY 285 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 356666543 47799999999999999999999999999999987643 2444666677676665
No 64
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=89.08 E-value=15 Score=35.44 Aligned_cols=71 Identities=24% Similarity=0.243 Sum_probs=52.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhh
Q 017286 258 RNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLI----KCLEHEVLEREIGRLRVVYQQQQQ 328 (374)
Q Consensus 258 rkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~l----kda~~E~L~~Ei~RLr~l~~qqq~ 328 (374)
..+..+..|+..+..+|..|+.+...|...|..|..+|..+++.... -.+....|+.||..||.-..+|..
T Consensus 209 ~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ 283 (312)
T PF00038_consen 209 EELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLR 283 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHH
Confidence 34556667888888888888888888888888888888888755332 234566788888888887776654
No 65
>PRK09039 hypothetical protein; Validated
Probab=88.79 E-value=11 Score=38.00 Aligned_cols=46 Identities=13% Similarity=0.125 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHH
Q 017286 254 AELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLA 299 (374)
Q Consensus 254 ~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~ 299 (374)
.|.-..|..|+.+++.|..+++.|+..-..+..+.++.+.+|+.|.
T Consensus 133 se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~ 178 (343)
T PRK09039 133 ARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLG 178 (343)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555555553
No 66
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=88.68 E-value=4.4 Score=32.41 Aligned_cols=55 Identities=22% Similarity=0.245 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHH-HHHHHHH---HHHHHHHHHHHHHHH
Q 017286 269 EVSAELEFLNQQNLILSMENKALKQRLESLAQE-QLIKCLE---HEVLEREIGRLRVVY 323 (374)
Q Consensus 269 ~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~-~~lkda~---~E~L~~Ei~RLr~l~ 323 (374)
.|..+|..|=.-+..|..||..|++++.++..+ .++.+-. -..+++=|.|||.+-
T Consensus 4 ~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~le 62 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 344445555555666666666666666666655 3333321 234555677887653
No 67
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=88.63 E-value=3.3 Score=32.28 Aligned_cols=47 Identities=26% Similarity=0.372 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLA 299 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~ 299 (374)
|.+|+..|+.|...+..|+..|..|.-+-.....|=.--.+||.++.
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a 51 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNIA 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 56677777777777777777776666555555555555555555544
No 68
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=88.53 E-value=10 Score=34.28 Aligned_cols=49 Identities=29% Similarity=0.380 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQE 301 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~ 301 (374)
+.+|+.+...++..+.++..++..+......+..+.+..+.++.++...
T Consensus 90 l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~ 138 (191)
T PF04156_consen 90 LQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDES 138 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555555555555555555554
No 69
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=88.45 E-value=5.6 Score=35.81 Aligned_cols=76 Identities=20% Similarity=0.086 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQQQQ 328 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~qqq~ 328 (374)
++.-.+.+..+++++..+..+|+.|..+...-..+...|...++.......-++...+.|+.|-+.||.-+.+..+
T Consensus 28 ~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~Wa~t~LP 103 (135)
T TIGR03495 28 LERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRRWADTPLP 103 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHhcCCCc
Confidence 4444555677777888888888888777777777888899999999988888999999999999999998876443
No 70
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=88.25 E-value=5.1 Score=42.26 Aligned_cols=78 Identities=31% Similarity=0.261 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHH--------------HHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHH-------H---
Q 017286 249 KLQYIAELERNVQSL--------------QAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQL-------I--- 304 (374)
Q Consensus 249 KlqYI~ELErkVq~L--------------Q~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~-------l--- 304 (374)
|..|-+||||.+..- +.|+.++.-+|..|.++...--.||.+|.+.+++-+|-.. -
T Consensus 391 KnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELna 470 (593)
T KOG4807|consen 391 KNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNA 470 (593)
T ss_pred HHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 667788888765432 2356666777777777777777899999888876554311 0
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHh
Q 017286 305 -KCLEHEVLEREIGRLRVVYQQQ 326 (374)
Q Consensus 305 -kda~~E~L~~Ei~RLr~l~~qq 326 (374)
..-+|-.|.+||-|||.+.--+
T Consensus 471 HNQELnnRLaaEItrLRtlltgd 493 (593)
T KOG4807|consen 471 HNQELNNRLAAEITRLRTLLTGD 493 (593)
T ss_pred HHHHHhhHHHHHHHHHHHHhccC
Confidence 1125667889999999987653
No 71
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=87.97 E-value=3.6 Score=41.60 Aligned_cols=55 Identities=25% Similarity=0.232 Sum_probs=35.7
Q ss_pred HHHHHHHhHHHHHhhHHHHHHHHH---------------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017286 274 LEFLNQQNLILSMENKALKQRLES---------------L-AQEQLIKCLEHEVLEREIGRLRVVYQQQQQ 328 (374)
Q Consensus 274 i~~L~~~~~~L~~EN~~LK~rL~a---------------L-~q~~~lkda~~E~L~~Ei~RLr~l~~qqq~ 328 (374)
|..|..+-..|..|+..|..+|.. + .....-..++...|+.||.|||.....+++
T Consensus 180 vN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL~~sq~ 250 (310)
T PF09755_consen 180 VNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDTAERLSSHIRSLRQEVSRLRQQLAASQQ 250 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777777777777762 0 011233445667899999999988777554
No 72
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=87.89 E-value=6.1 Score=44.04 Aligned_cols=62 Identities=32% Similarity=0.297 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGR 318 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~R 318 (374)
++.||.....|..|+.+++.+=+.|-+++..|..||-.|..++..|.+.+. ..|.||-||.|
T Consensus 71 ~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQv----efE~~Khei~r 132 (717)
T PF09730_consen 71 CEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQV----EFEGLKHEIKR 132 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHH
Confidence 445556666667777777777777778888888888888888888877543 44444444443
No 73
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=87.87 E-value=11 Score=34.88 Aligned_cols=46 Identities=24% Similarity=0.274 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHH
Q 017286 251 QYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLE 296 (374)
Q Consensus 251 qYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~ 296 (374)
..|.|+++-++.|+-|..+|.-+++.++.....|..||..|-+|+=
T Consensus 137 ~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm 182 (194)
T PF08614_consen 137 EELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWM 182 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677777777777777777777777777777777777766653
No 74
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=87.19 E-value=5.8 Score=42.94 Aligned_cols=50 Identities=18% Similarity=0.254 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHH
Q 017286 251 QYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQ 300 (374)
Q Consensus 251 qYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q 300 (374)
.-+.+++..+..|++|.+.+..++..|..+...|..||.-|...|+.+..
T Consensus 141 e~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 141 EKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 34455566666677777777777777777777777777777766666554
No 75
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=87.04 E-value=5.7 Score=33.80 Aligned_cols=67 Identities=24% Similarity=0.308 Sum_probs=52.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017286 259 NVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQQ 326 (374)
Q Consensus 259 kVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~qq 326 (374)
.+..++.+...+..+|..+..++..|...|.+|-..|..|..+.-.... .+.+..+|++++.-+...
T Consensus 4 ~~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~-~~~~~~~l~~~~~~lk~~ 70 (106)
T PF05837_consen 4 EILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE-DEELSEKLEKLEKELKKS 70 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHHH
Confidence 4667788888899999999999999999999999999888877665555 566667777666665553
No 76
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=86.95 E-value=10 Score=30.54 Aligned_cols=64 Identities=27% Similarity=0.338 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVY 323 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~ 323 (374)
|.|-.-.|..|+.|+..|+.+.-.+......|+..+.++-..+..+.. -.+.+..||..|+..+
T Consensus 7 l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~-------~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 7 LAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKK-------KLEELEKELESLEERL 70 (74)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHh
Confidence 456666777777777777776666655555566665555555555443 3566677777777654
No 77
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=86.91 E-value=9.3 Score=38.23 Aligned_cols=51 Identities=35% Similarity=0.458 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHH
Q 017286 251 QYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQE 301 (374)
Q Consensus 251 qYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~ 301 (374)
.-+.+++..++.|+.|...|..+|..|+++...|..|-.+|+.+++.+.++
T Consensus 43 ~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~e 93 (314)
T PF04111_consen 43 EDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEE 93 (314)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777888888888888888877777777777777777776544
No 78
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=86.81 E-value=2 Score=44.65 Aligned_cols=81 Identities=26% Similarity=0.293 Sum_probs=66.9
Q ss_pred hhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 017286 233 ETKRAKQ--QFAQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHE 310 (374)
Q Consensus 233 DpKRaKR--qSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E 310 (374)
|+-|.|. ++|+--|+|-+|--+..|..+..+..|..-|.+++..+.....+|..||-.||.-+..++...+.-.- ||
T Consensus 218 dksr~~k~eee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~p-Ne 296 (561)
T KOG1103|consen 218 DKSRTKKGEEEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHLRP-NE 296 (561)
T ss_pred CccccCCChHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCc-cc
Confidence 4444443 88889999999999999999999999999999999999999999999999999999988876554322 44
Q ss_pred HHHH
Q 017286 311 VLER 314 (374)
Q Consensus 311 ~L~~ 314 (374)
.|+.
T Consensus 297 qLk~ 300 (561)
T KOG1103|consen 297 QLKG 300 (561)
T ss_pred cccC
Confidence 4544
No 79
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=86.80 E-value=7 Score=43.30 Aligned_cols=82 Identities=32% Similarity=0.280 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHHHHhHHHHHhhHHHHHHHHHHHHHHHH---HHHHHHHH
Q 017286 239 QQFAQRSRVRKLQYIAELERNVQSLQAEGTEVSAE---LEFLNQQNLILSMENKALKQRLESLAQEQLI---KCLEHEVL 312 (374)
Q Consensus 239 RqSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~---i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~l---kda~~E~L 312 (374)
+..||.-|.|-|..+.|+-+ +.|.+...-|..+ ++.|+.++..|++|=++||.++.+|+.++.= |--+.|.|
T Consensus 133 qVeaQgEKIrDLE~cie~kr--~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKLkltalEkeq~e~E~K~R~se~l 210 (861)
T KOG1899|consen 133 QVEAQGEKIRDLETCIEEKR--NKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKLKLTALEKEQNETEKKLRLSENL 210 (861)
T ss_pred HHHHhhhhHHHHHHHHHHHH--hhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHH
Confidence 58899999999888766433 3333333333332 3788999999999999999999999965522 22245677
Q ss_pred HHHHHHHHHH
Q 017286 313 EREIGRLRVV 322 (374)
Q Consensus 313 ~~Ei~RLr~l 322 (374)
..||.++++-
T Consensus 211 ~qevn~~kv~ 220 (861)
T KOG1899|consen 211 MQEVNQSKVG 220 (861)
T ss_pred HHHHHHHHHH
Confidence 7788777653
No 80
>PRK09039 hypothetical protein; Validated
Probab=86.59 E-value=6.6 Score=39.70 Aligned_cols=47 Identities=28% Similarity=0.325 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHH
Q 017286 255 ELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQE 301 (374)
Q Consensus 255 ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~ 301 (374)
+|+.++..+.++.++..++|..|+++-..|......|...|.+.+++
T Consensus 120 ~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~ 166 (343)
T PRK09039 120 ELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKR 166 (343)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555566666666666666666666666555544
No 81
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=86.51 E-value=12 Score=35.22 Aligned_cols=44 Identities=27% Similarity=0.298 Sum_probs=24.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHH
Q 017286 258 RNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQE 301 (374)
Q Consensus 258 rkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~ 301 (374)
..+..+..++..+..++..|......+..+...++.+|..+.+.
T Consensus 56 ~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~ 99 (302)
T PF10186_consen 56 LEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRES 99 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555566666666666555555555555555555554443
No 82
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=86.29 E-value=3.1 Score=41.61 Aligned_cols=56 Identities=27% Similarity=0.341 Sum_probs=44.8
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHH
Q 017286 245 SRVRKLQYIA----ELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQ 300 (374)
Q Consensus 245 SR~RKlqYI~----ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q 300 (374)
-|+|||.-|+ -||-.+++...|-..|..+|.-|++++..++..=.+.|..|+.|..
T Consensus 54 ervrklh~~~~~~y~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglre 113 (389)
T PF06216_consen 54 ERVRKLHIISDYIYNKEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLRE 113 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4788887555 4788888888999999999999988888888777777777777654
No 83
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=86.09 E-value=2.8 Score=35.13 Aligned_cols=64 Identities=20% Similarity=0.325 Sum_probs=35.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 017286 259 NVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKC-LEHEVLEREIGRLRVVYQ 324 (374)
Q Consensus 259 kVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkd-a~~E~L~~Ei~RLr~l~~ 324 (374)
+|.-|+......-+..+++.+++..|..|...|+.+++- .....+- ++|-.|+.|+.|||.+|-
T Consensus 4 kI~rLE~~~~g~l~~~~~~~~e~~~L~eEI~~Lr~qve~--nPevtr~A~EN~rL~ee~rrl~~f~~ 68 (86)
T PF12711_consen 4 KIKRLEKLLDGKLPSESYLEEENEALKEEIQLLREQVEH--NPEVTRFAMENIRLREELRRLQSFYV 68 (86)
T ss_pred HHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444455544444444444444444431 1123333 469999999999999984
No 84
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=85.72 E-value=6.8 Score=38.81 Aligned_cols=54 Identities=31% Similarity=0.281 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKC 306 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkd 306 (374)
|-||+..-+.|++|+-.|...-.-|-.++..|.++=-.|++.|..+.|+++...
T Consensus 99 i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~~~~~ 152 (292)
T KOG4005|consen 99 IKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQQHNT 152 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHhh
Confidence 344555555555555555554444444444444444444555555444444433
No 85
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=85.56 E-value=11 Score=35.17 Aligned_cols=34 Identities=24% Similarity=0.326 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQQNLILSM 286 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~ 286 (374)
..+|+.++..|+.+...|..++..|..+...+..
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek 155 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEK 155 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555444444433
No 86
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=85.43 E-value=10 Score=41.54 Aligned_cols=55 Identities=27% Similarity=0.344 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHh------------------------hHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHH
Q 017286 248 RKLQYIAELERNVQSLQAE------------------------GTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQ 302 (374)
Q Consensus 248 RKlqYI~ELErkVq~LQ~E------------------------~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~ 302 (374)
.+..-|.|||++|+.++.+ |..|+.+|+.|+.-...|+++|.+|+..|++-.+-+
T Consensus 119 EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~ 197 (617)
T PF15070_consen 119 EQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVK 197 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHH
Confidence 4556677888877777665 356788899999999999999988877777655443
No 87
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=85.40 E-value=13 Score=40.38 Aligned_cols=14 Identities=14% Similarity=0.230 Sum_probs=9.4
Q ss_pred CCCCCccccccccc
Q 017286 94 RSSSDSFAYIDLVN 107 (374)
Q Consensus 94 RSsSDS~Afld~~~ 107 (374)
+++-|=++|+=++.
T Consensus 48 ~s~rdY~Tf~Wa~~ 61 (546)
T PF07888_consen 48 SSTRDYYTFVWAPV 61 (546)
T ss_pred CchhheeeEEeecc
Confidence 46668888876543
No 88
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=85.32 E-value=4.1 Score=36.55 Aligned_cols=43 Identities=30% Similarity=0.466 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQ 300 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q 300 (374)
|.+|..++..|+.++..|..+++.|... .-|.+|...|+.|++
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~-----~t~~el~~~i~~l~~ 123 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSE-----PTNEELREEIEELEE 123 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHH
Confidence 6777777777777777777777777553 223344444444444
No 89
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=84.92 E-value=3.3 Score=31.77 Aligned_cols=49 Identities=35% Similarity=0.533 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 248 RKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLR 320 (374)
Q Consensus 248 RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr 320 (374)
+|+.-|.|||+++++=+ | .=..+++..+.+|..|+. +|..|++|++++|
T Consensus 1 kw~~Rl~ELe~klkaer-E----------------~R~~d~~~a~~rl~~l~~-------EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 1 KWLLRLEELERKLKAER-E----------------ARSLDRSAARKRLSKLEG-------ENRLLRAELERLR 49 (52)
T ss_pred CHHHHHHHHHHHHHHhH-H----------------hccCCchhHHHHHHHHHH-------HHHHHHHHHHHHh
Confidence 46777889999987533 1 123455666666666654 5666666666655
No 90
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=84.70 E-value=21 Score=38.83 Aligned_cols=15 Identities=20% Similarity=0.142 Sum_probs=6.6
Q ss_pred CCCCCCCcccccccc
Q 017286 92 HRRSSSDSFAYIDLV 106 (374)
Q Consensus 92 HRRSsSDS~Afld~~ 106 (374)
|..|+.|=|-++-+.
T Consensus 32 ~~ps~~DWIGiFKVG 46 (546)
T PF07888_consen 32 FHPSSKDWIGIFKVG 46 (546)
T ss_pred CCCCCCCeeEEeecC
Confidence 334444444444433
No 91
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=84.35 E-value=9 Score=42.01 Aligned_cols=76 Identities=33% Similarity=0.345 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHH----------------------------HHhHHHHHhhHHHHHHHHHHHHHH-
Q 017286 252 YIAELERNVQSLQAEGTEVSAELEFLN----------------------------QQNLILSMENKALKQRLESLAQEQ- 302 (374)
Q Consensus 252 YI~ELErkVq~LQ~E~a~Ls~~i~~L~----------------------------~~~~~L~~EN~~LK~rL~aL~q~~- 302 (374)
-|.+||+.+..|+.++..|..+|..+. .....|..||..|+.+|..|+...
T Consensus 511 ~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~~l~~le~~~~ 590 (722)
T PF05557_consen 511 EIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLARLRSLEEGNS 590 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 466677777777777777776666521 556788999999999996554211
Q ss_pred ------------------HHHHHHHHHHHHHHHHHHHHHHHhh
Q 017286 303 ------------------LIKCLEHEVLEREIGRLRVVYQQQQ 327 (374)
Q Consensus 303 ------------------~lkda~~E~L~~Ei~RLr~l~~qqq 327 (374)
.--.+..+.+++-.+|||.+|...-
T Consensus 591 ~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RLkevf~~ks 633 (722)
T PF05557_consen 591 QPVDAVPTSSLESQEKEIAELKAELASAEKRNQRLKEVFKAKS 633 (722)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112345667778889999997753
No 92
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=84.23 E-value=26 Score=32.65 Aligned_cols=43 Identities=26% Similarity=0.123 Sum_probs=20.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 017286 282 LILSMENKALKQRLESLAQEQL----IKCLEHEVLEREIGRLRVVYQ 324 (374)
Q Consensus 282 ~~L~~EN~~LK~rL~aL~q~~~----lkda~~E~L~~Ei~RLr~l~~ 324 (374)
..|..+-.+|+.+++.|..+.. .--...+.+++|+..++....
T Consensus 106 ~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~~an 152 (188)
T PF03962_consen 106 EELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIAKEAAN 152 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443322 111345667777777766543
No 93
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=84.22 E-value=7.9 Score=35.95 Aligned_cols=66 Identities=29% Similarity=0.360 Sum_probs=36.4
Q ss_pred hHHHHHHHH-----HHHHHHHHHHHHHH-----HHHHHHHHhhHHHHHHHHHHHHHh------HHHHHhhHHHHHHHHHH
Q 017286 235 KRAKQQFAQ-----RSRVRKLQYIAELE-----RNVQSLQAEGTEVSAELEFLNQQN------LILSMENKALKQRLESL 298 (374)
Q Consensus 235 KRaKRqSAq-----RSR~RKlqYI~ELE-----rkVq~LQ~E~a~Ls~~i~~L~~~~------~~L~~EN~~LK~rL~aL 298 (374)
++..|-||+ =|-+|| +|-.++| |+...-....-+|..=|.||++-. ..|..||..|+..++.|
T Consensus 38 ~~L~RTsAACGFRWNs~VRk-qY~~~i~~AKkqRk~~~~~~~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l 116 (161)
T TIGR02894 38 RALNRTAAACGFRWNAYVRK-QYEEAIELAKKQRKELKREAGSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESL 116 (161)
T ss_pred HHHcccHHHhcchHHHHHHH-HHHHHHHHHHHHHhccccCcccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Confidence 445565544 244444 6777776 322211113344666666665443 34667788887777777
Q ss_pred HHH
Q 017286 299 AQE 301 (374)
Q Consensus 299 ~q~ 301 (374)
.++
T Consensus 117 ~~~ 119 (161)
T TIGR02894 117 QKR 119 (161)
T ss_pred HHH
Confidence 764
No 94
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=84.16 E-value=10 Score=35.62 Aligned_cols=69 Identities=26% Similarity=0.317 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 252 YIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVY 323 (374)
Q Consensus 252 YI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~ 323 (374)
..++|..+|..++.+...-..+|..|.+ .|...|+.++.+|..-.....=-......|..||++|++..
T Consensus 119 eReeL~~kL~~~~~~l~~~~~ki~~Lek---~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~kl 187 (194)
T PF15619_consen 119 EREELQRKLSQLEQKLQEKEKKIQELEK---QLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKL 187 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666666666655 34455666666665555444433445677777777777643
No 95
>PF15058 Speriolin_N: Speriolin N terminus
Probab=83.93 E-value=2 Score=40.91 Aligned_cols=43 Identities=23% Similarity=0.152 Sum_probs=35.5
Q ss_pred HHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 276 FLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGR 318 (374)
Q Consensus 276 ~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~R 318 (374)
-|.++...|+.||.+||.++..|.....+|.++.|+-..=.+|
T Consensus 9 GlrhqierLv~ENeeLKKlVrLirEN~eLksaL~ea~~~~~~r 51 (200)
T PF15058_consen 9 GLRHQIERLVRENEELKKLVRLIRENHELKSALGEACAEPSQR 51 (200)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 3566777789999999999999999999999987777666655
No 96
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=83.76 E-value=16 Score=40.22 Aligned_cols=80 Identities=21% Similarity=0.201 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 245 SRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQ 324 (374)
Q Consensus 245 SR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~ 324 (374)
+++.-++.-.+|+.+|.-|++|+..|..+|..+..+...-.++=.....++....+...|-+|.....+.+...|+....
T Consensus 73 ~~e~~~~~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~ 152 (632)
T PF14817_consen 73 SRENEARRRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTK 152 (632)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555778999999999999999999999998888777777777788888888888888888888888887777554
No 97
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=83.64 E-value=25 Score=34.50 Aligned_cols=57 Identities=26% Similarity=0.268 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHH
Q 017286 245 SRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQE 301 (374)
Q Consensus 245 SR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~ 301 (374)
+-+.....+..|++.+++++....+|..+|.-|......|..+-..|+.++..++..
T Consensus 83 ~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~ 139 (239)
T COG1579 83 SAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKN 139 (239)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566677888888888888888888888888888888888888888888777654
No 98
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=83.60 E-value=5.1 Score=30.62 Aligned_cols=27 Identities=37% Similarity=0.449 Sum_probs=11.5
Q ss_pred HHHHHHHhHHHHHhhHHHHHHHHHHHH
Q 017286 274 LEFLNQQNLILSMENKALKQRLESLAQ 300 (374)
Q Consensus 274 i~~L~~~~~~L~~EN~~LK~rL~aL~q 300 (374)
|..|+.....|..+|..|+..+..|.+
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~ 54 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKK 54 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444433
No 99
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=83.59 E-value=16 Score=39.82 Aligned_cols=57 Identities=21% Similarity=0.330 Sum_probs=48.2
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHH
Q 017286 240 QFAQRSRVRKL-QYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLE 296 (374)
Q Consensus 240 qSAqRSR~RKl-qYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~ 296 (374)
.++-+.=++|. .|+.+++.+-+.+......|+.+|..-..++..|..+|..||-+|+
T Consensus 268 ~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie 325 (581)
T KOG0995|consen 268 KARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIE 325 (581)
T ss_pred HHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555664 5999999999999999999999999999999999999999987775
No 100
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=83.54 E-value=11 Score=41.69 Aligned_cols=71 Identities=27% Similarity=0.309 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKC---LEHEVLEREIGRLRVVY 323 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkd---a~~E~L~~Ei~RLr~l~ 323 (374)
|..|..++..|..+...|..++..+++....+..++..+..+|+.++....-+. .++..|..||+.||.-.
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGnI 316 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGNI 316 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 555555666666666666666666666666666666666666666666555555 56666777777776643
No 101
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=83.48 E-value=8.9 Score=31.88 Aligned_cols=36 Identities=19% Similarity=0.262 Sum_probs=17.7
Q ss_pred HHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHH
Q 017286 262 SLQAEGTEVSAELEFLNQQNLILSMENKALKQRLES 297 (374)
Q Consensus 262 ~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~a 297 (374)
.|++.+-..-..|++|+-+-..|..+|..|.+.++.
T Consensus 8 qLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555554444444444444444444
No 102
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=83.46 E-value=28 Score=30.46 Aligned_cols=43 Identities=21% Similarity=0.156 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHH
Q 017286 255 ELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLES 297 (374)
Q Consensus 255 ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~a 297 (374)
+|+.++.+|+.+...++.-...|..++..|.+-+..|+.+-.+
T Consensus 13 el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s 55 (107)
T PF09304_consen 13 ELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNAS 55 (107)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444333333
No 103
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.46 E-value=6.2 Score=32.43 Aligned_cols=34 Identities=26% Similarity=0.391 Sum_probs=13.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHH
Q 017286 259 NVQSLQAEGTEVSAELEFLNQQNLILSMENKALK 292 (374)
Q Consensus 259 kVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK 292 (374)
.|..|..++.+|..++..+++.+..|..||..||
T Consensus 26 EieELKEknn~l~~e~q~~q~~reaL~~eneqlk 59 (79)
T COG3074 26 EIEELKEKNNSLSQEVQNAQHQREALERENEQLK 59 (79)
T ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333444444444444333
No 104
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=83.43 E-value=3.1 Score=45.42 Aligned_cols=55 Identities=38% Similarity=0.380 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHH
Q 017286 240 QFAQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQE 301 (374)
Q Consensus 240 qSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~ 301 (374)
.+||+=|-|||--|..||..|..|+.|-..|..+ +..+..+=..+|++|..|-++
T Consensus 500 vAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~E-------r~~~d~~L~~~kqqls~L~~~ 554 (604)
T KOG3863|consen 500 VAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRE-------RDELDSTLGVMKQQLSELYQE 554 (604)
T ss_pred hhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999988766543 333445557778888777764
No 105
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=83.29 E-value=0.72 Score=38.99 Aligned_cols=47 Identities=30% Similarity=0.414 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHH
Q 017286 251 QYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLES 297 (374)
Q Consensus 251 qYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~a 297 (374)
.||.+|+..+..|..++..|..+|..|+.+...+..++..|+..|..
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~ 71 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQ 71 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhh
Confidence 58999999999999999999999999988888887777777766543
No 106
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=83.17 E-value=16 Score=33.16 Aligned_cols=57 Identities=26% Similarity=0.415 Sum_probs=25.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 261 QSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQ 325 (374)
Q Consensus 261 q~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~q 325 (374)
-+|.+-.-..+=++..+++ ...|..+|..|.++|+.|.+ .+..+..|+..+|..|.+
T Consensus 57 RTLKNRGYA~sCR~KRv~Q-k~eLE~~k~~L~qqv~~L~~-------e~s~~~~E~da~k~k~e~ 113 (135)
T KOG4196|consen 57 RTLKNRGYAQSCRVKRVQQ-KHELEKEKAELQQQVEKLKE-------ENSRLRRELDAYKSKYEA 113 (135)
T ss_pred HHHhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 3444444444444444432 23344444444444444443 344444555555554444
No 107
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=83.16 E-value=27 Score=33.32 Aligned_cols=45 Identities=24% Similarity=0.222 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHH
Q 017286 255 ELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLA 299 (374)
Q Consensus 255 ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~ 299 (374)
+|+..+..|+.|+..|...+..++.....+..|-..|+.+++.++
T Consensus 53 ~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 53 ELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444
No 108
>PHA02562 46 endonuclease subunit; Provisional
Probab=83.01 E-value=30 Score=35.98 Aligned_cols=51 Identities=12% Similarity=0.060 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHH
Q 017286 250 LQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQ 300 (374)
Q Consensus 250 lqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q 300 (374)
...+.+|+.++..+...+.++..++..|+.+...|..++..+..+|..++.
T Consensus 336 ~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~ 386 (562)
T PHA02562 336 SKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQD 386 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444443
No 109
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=82.86 E-value=29 Score=32.39 Aligned_cols=54 Identities=24% Similarity=0.303 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 017286 269 EVSAELEFLNQQNLILSMENKALKQRLESLAQEQ-LIKCLEHEVLEREIGRLRVV 322 (374)
Q Consensus 269 ~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~-~lkda~~E~L~~Ei~RLr~l 322 (374)
.|..+|..|..+...|..+-..|+.+++.++... ..+.........||..||..
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~ 178 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQ 178 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444332 22334455556666666653
No 110
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=82.70 E-value=7.6 Score=33.47 Aligned_cols=52 Identities=31% Similarity=0.272 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017286 268 TEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQQ 326 (374)
Q Consensus 268 a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~qq 326 (374)
..|..+|..|+++...|..+=.+||..|..|.. +|.+|+-|-++||....+-
T Consensus 4 ~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~E-------EN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 4 KELFDRLDQLEQQLGQLLEELEELKKQLQELLE-------ENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 356666666666666666666677777766665 4666666777777666653
No 111
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=82.60 E-value=7.9 Score=39.00 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQQ 280 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~~ 280 (374)
+.|-|++++.=.+|+.+|+.||+.++++
T Consensus 77 Lkes~~~l~dRetEI~eLksQL~RMrED 104 (305)
T PF15290_consen 77 LKESENRLHDRETEIDELKSQLARMRED 104 (305)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3467888888899999999999998765
No 112
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=82.46 E-value=9.5 Score=37.25 Aligned_cols=31 Identities=29% Similarity=0.332 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 291 LKQRLESLAQEQLIKCLEHEVLEREIGRLRV 321 (374)
Q Consensus 291 LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~ 321 (374)
+|+|...||++..........|+.||..||.
T Consensus 91 FR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~ 121 (248)
T PF08172_consen 91 FRQRNAELEEELRKQQQTISSLRREVESLRA 121 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555567777888877764
No 113
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=82.40 E-value=9.4 Score=38.01 Aligned_cols=12 Identities=25% Similarity=0.412 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHH
Q 017286 314 REIGRLRVVYQQ 325 (374)
Q Consensus 314 ~Ei~RLr~l~~q 325 (374)
.||.+||.-|..
T Consensus 276 ~Ev~~Lk~~~~~ 287 (325)
T PF08317_consen 276 SEVKRLKAKVDA 287 (325)
T ss_pred HHHHHHHHHHHH
Confidence 345555555554
No 114
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=82.13 E-value=26 Score=29.05 Aligned_cols=43 Identities=30% Similarity=0.429 Sum_probs=21.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHH---HhHHHHHhhHHHHHHHHHHHH
Q 017286 258 RNVQSLQAEGTEVSAELEFLNQ---QNLILSMENKALKQRLESLAQ 300 (374)
Q Consensus 258 rkVq~LQ~E~a~Ls~~i~~L~~---~~~~L~~EN~~LK~rL~aL~q 300 (374)
.+++.|+.+-..++.+|..+.. +...|..|=++||.+|..++.
T Consensus 43 ~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~ 88 (108)
T PF02403_consen 43 QELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEE 88 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555554433 244555555555555555554
No 115
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=82.12 E-value=5.6 Score=34.68 Aligned_cols=45 Identities=31% Similarity=0.386 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHH
Q 017286 256 LERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQ 300 (374)
Q Consensus 256 LErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q 300 (374)
|=.+|-.||+....|+.+|....+++..|..||..|-+=|++|..
T Consensus 61 lItQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMS 105 (120)
T KOG3650|consen 61 LITQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMS 105 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHh
Confidence 335688899999999999999999999999999999999998865
No 116
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=82.08 E-value=3.7 Score=40.02 Aligned_cols=52 Identities=29% Similarity=0.333 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHH
Q 017286 239 QQFAQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLA 299 (374)
Q Consensus 239 RqSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~ 299 (374)
=..+||-|.|+- +.|||..+..++.++..|..+|.. |..+|-.|=+|+.=|+
T Consensus 83 IVtsQRDRFR~R--n~ELE~elr~~~~~~~~L~~Ev~~-------L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 83 IVTSQRDRFRQR--NAELEEELRKQQQTISSLRREVES-------LRADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHh
Confidence 367888888853 566666666666666666555555 4667777766665443
No 117
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=82.05 E-value=22 Score=41.38 Aligned_cols=66 Identities=20% Similarity=0.199 Sum_probs=34.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 257 ERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVV 322 (374)
Q Consensus 257 ErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l 322 (374)
..+++.|..|+..+..+|..++.....+...|..|+.++..++...+-+.-.-+.++.|++.++..
T Consensus 447 ~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~ 512 (1041)
T KOG0243|consen 447 AEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKAT 512 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555554445555555555555555554444555555555544443
No 118
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=82.04 E-value=16 Score=42.46 Aligned_cols=54 Identities=24% Similarity=0.183 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHH
Q 017286 247 VRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQ 300 (374)
Q Consensus 247 ~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q 300 (374)
-|+..-+.+|+..++++...-..+..++..|.+..-.|..||..|-.+|+.|..
T Consensus 505 srl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 505 SRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666666666666777777777766666665
No 119
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=82.01 E-value=35 Score=36.14 Aligned_cols=86 Identities=22% Similarity=0.244 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHH---HHH-----------HHHHHHHH--
Q 017286 240 QFAQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALK---QRL-----------ESLAQEQL-- 303 (374)
Q Consensus 240 qSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK---~rL-----------~aL~q~~~-- 303 (374)
.-|.+-..+-+|.+..|-...+-||++..+|..+-..|..+...|-++.++|. .+| +-++|+.+
T Consensus 126 ~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~l 205 (499)
T COG4372 126 AAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNL 205 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666777888888888889999999998888888877777777777765 222 22333322
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHH
Q 017286 304 -IKCLEHEVLEREIGRLRVVYQQ 325 (374)
Q Consensus 304 -lkda~~E~L~~Ei~RLr~l~~q 325 (374)
-+.--.+++.+|+.++-+..+|
T Consensus 206 a~r~~a~q~r~~ela~r~aa~Qq 228 (499)
T COG4372 206 ATRANAAQARTEELARRAAAAQQ 228 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122346778888888777766
No 120
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=82.01 E-value=12 Score=31.24 Aligned_cols=60 Identities=25% Similarity=0.332 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHH
Q 017286 240 QFAQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLA 299 (374)
Q Consensus 240 qSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~ 299 (374)
+++--.|+-+.+-..+||..|+.|+..-+.|..+|.........|..-|.+++.||....
T Consensus 21 E~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~ 80 (89)
T PF13747_consen 21 EKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAI 80 (89)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556566666666669999999999999999999999999999999999999999998654
No 121
>PF15294 Leu_zip: Leucine zipper
Probab=81.96 E-value=15 Score=36.71 Aligned_cols=51 Identities=31% Similarity=0.303 Sum_probs=37.5
Q ss_pred HHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 274 LEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQ 324 (374)
Q Consensus 274 i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~ 324 (374)
..+|..+...|..||..||.||..++.++-.---....|+.++..|+.+--
T Consensus 127 ~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~ 177 (278)
T PF15294_consen 127 SELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQG 177 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777777788888888888888888776666667777777777777433
No 122
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=81.83 E-value=8.3 Score=37.50 Aligned_cols=58 Identities=12% Similarity=0.158 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHH
Q 017286 236 RAKQQFAQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESL 298 (374)
Q Consensus 236 RaKRqSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL 298 (374)
+.-|....+++ =+.||..+++.||.|+..|..+|..++.+...|...+++|-+.|..+
T Consensus 44 ~le~~~~~~~~-----~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 44 QLERISNAHSQ-----LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred HHHHHHHhhhH-----HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566766663 45899999999999999999999999999988888888888888764
No 123
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=81.67 E-value=5.8 Score=48.17 Aligned_cols=58 Identities=31% Similarity=0.308 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHH
Q 017286 244 RSRVRKLQYIAELERNVQS-------LQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQE 301 (374)
Q Consensus 244 RSR~RKlqYI~ELErkVq~-------LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~ 301 (374)
-.+.+...-|.||..+|.. ||.++.+|.++|.........|.+||..-|+|-+.|...
T Consensus 1236 ee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k 1300 (1822)
T KOG4674|consen 1236 EENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEK 1300 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555 455666777777777777888888888888888777765
No 124
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=81.51 E-value=16 Score=39.07 Aligned_cols=50 Identities=24% Similarity=0.373 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHH-hHHHHHhhHHHHHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQQ-NLILSMENKALKQRLESLAQEQ 302 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~~-~~~L~~EN~~LK~rL~aL~q~~ 302 (374)
+.+|+..=+.|..|+..|..+-..+.++ ...|..+..+|.++.+.|..+.
T Consensus 75 ~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~ 125 (472)
T TIGR03752 75 LAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSER 125 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3455555556666666666655555444 5666677777777777766553
No 125
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=81.27 E-value=2.6 Score=39.14 Aligned_cols=53 Identities=21% Similarity=0.280 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEH 309 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~ 309 (374)
+++||.|...-=..++-|-.+| .++..|..|+.-||..+..|.|+.++++-+.
T Consensus 2 LeD~EsklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl~V~ek~~ 54 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL----DEKENLREEVQRLKDELRDLKQELIVQEKLR 54 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCH---------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5677777777666777777777 5678888888888888888888887776654
No 126
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=81.14 E-value=25 Score=32.06 Aligned_cols=46 Identities=28% Similarity=0.319 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHH-HHhHHHHHhhHHHHHHHHHHHH
Q 017286 255 ELERNVQSLQAEGTEVSAELEFLN-QQNLILSMENKALKQRLESLAQ 300 (374)
Q Consensus 255 ELErkVq~LQ~E~a~Ls~~i~~L~-~~~~~L~~EN~~LK~rL~aL~q 300 (374)
+||.-...+.+..++|+.+|..+. .+...|..++..|+..++.|.+
T Consensus 48 d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~ 94 (177)
T PF07798_consen 48 DLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQ 94 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444432 2233444444444444444433
No 127
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=81.06 E-value=12 Score=37.97 Aligned_cols=64 Identities=22% Similarity=0.342 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 250 LQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLR 320 (374)
Q Consensus 250 lqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr 320 (374)
+.-|.+|+++++.+-.|+..|...|.........|.+|..+|+.|-+.+.. +|.++ ..|+..||
T Consensus 240 lsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~--mL~Ea-----QEElk~lR 303 (306)
T PF04849_consen 240 LSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMA--MLHEA-----QEELKTLR 303 (306)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH-----HHHHHHhh
Confidence 456889999999999999999999999988888999999999988765543 33343 44555555
No 128
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=80.85 E-value=11 Score=36.55 Aligned_cols=71 Identities=24% Similarity=0.252 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 255 ELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQ 325 (374)
Q Consensus 255 ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~q 325 (374)
.||.+...++.++..|..+.......+..|..+-.++...+..|..+..-++...+.|+.++...|.....
T Consensus 51 ~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ 121 (246)
T PF00769_consen 51 ELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEE 121 (246)
T ss_dssp HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666666666666666677777777888888888899999999999999999998888875543
No 129
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=80.81 E-value=32 Score=37.50 Aligned_cols=48 Identities=25% Similarity=0.230 Sum_probs=34.1
Q ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 278 NQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQ 325 (374)
Q Consensus 278 ~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~q 325 (374)
..--..|.+|.+.+|-++..|+.+..---+++..|..+|+++|...++
T Consensus 147 ~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~ 194 (546)
T KOG0977|consen 147 LSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDD 194 (546)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 334455677778888888888877766667788888888888764443
No 130
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=80.71 E-value=22 Score=37.39 Aligned_cols=72 Identities=22% Similarity=0.202 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHH------------------HHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 252 YIAELERNVQSLQAEGTEVSAELEFLNQQNLIL------------------SMENKALKQRLESLAQEQLIKCLEHEVLE 313 (374)
Q Consensus 252 YI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L------------------~~EN~~LK~rL~aL~q~~~lkda~~E~L~ 313 (374)
-|.+||..+..++.+...+..++.+|+.....+ ..--..+..++..+..+..=.+...+.|+
T Consensus 79 ~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (525)
T TIGR02231 79 QIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREAERRIRELE 158 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777776654322 12222334455555544444444566777
Q ss_pred HHHHHHHHHH
Q 017286 314 REIGRLRVVY 323 (374)
Q Consensus 314 ~Ei~RLr~l~ 323 (374)
+||+.|+.-.
T Consensus 159 ~~l~~l~~~l 168 (525)
T TIGR02231 159 KQLSELQNEL 168 (525)
T ss_pred HHHHHHHHHH
Confidence 7777775544
No 131
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=80.68 E-value=1.1 Score=38.17 Aligned_cols=72 Identities=22% Similarity=0.290 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 252 YIAELERNVQSLQAEGTEVSAELEFLNQQNLILSME---NKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQ 325 (374)
Q Consensus 252 YI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~E---N~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~q 325 (374)
-..++|..+..++.|+..|++.| .++-+.|...+ ...+..+...|+.+..=++++.+.|..++..||.+.+.
T Consensus 9 ~r~~ae~~~~~ie~ElEeLTasL--FeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v~~~ 83 (100)
T PF06428_consen 9 RREEAEQEKEQIESELEELTASL--FEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKTVMES 83 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888888888744 33334444333 34566777777776666777888999999999987765
No 132
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=80.65 E-value=10 Score=42.56 Aligned_cols=71 Identities=25% Similarity=0.276 Sum_probs=46.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHH----------HHHHHH--HH-----HHHHHHHHHHHHHHHH
Q 017286 257 ERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRL----------ESLAQE--QL-----IKCLEHEVLEREIGRL 319 (374)
Q Consensus 257 ErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL----------~aL~q~--~~-----lkda~~E~L~~Ei~RL 319 (374)
|..+..||.|++.|-..-..|..+...|++||-.|+.+. ..|.|- ++ =|+-..|.|+..+.-|
T Consensus 865 eGElthlq~e~~~le~~Rs~laeElvklT~e~e~l~ek~~~~p~~~~~ledL~qRy~a~LqmyGEk~Ee~EELrlDl~dl 944 (961)
T KOG4673|consen 865 EGELTHLQTELASLESIRSSLAEELVKLTAECEKLREKADRVPGIKAELEDLRQRYAAALQMYGEKDEELEELRLDLVDL 944 (961)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhHHHH
Confidence 555666666666666666666666666677766665443 333332 11 1445678899999999
Q ss_pred HHHHHHhh
Q 017286 320 RVVYQQQQ 327 (374)
Q Consensus 320 r~l~~qqq 327 (374)
|.+|.-|-
T Consensus 945 K~mYk~QI 952 (961)
T KOG4673|consen 945 KEMYKEQI 952 (961)
T ss_pred HHHHHHHH
Confidence 99998774
No 133
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=80.64 E-value=32 Score=31.84 Aligned_cols=109 Identities=15% Similarity=0.184 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 017286 246 RVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEH----EVLEREIGRLRV 321 (374)
Q Consensus 246 R~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~----E~L~~Ei~RLr~ 321 (374)
+..-...+..|+..+..+...+..|...|..|......|..+-..|+-|.....-+..+.+++. ......++|++.
T Consensus 93 k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~~~~a~~~~er~e~ 172 (221)
T PF04012_consen 93 KADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALASFSVSSAMDSFERMEE 172 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHH
Confidence 3333445666777777777788888888888888888888888888888887777777777653 444566677766
Q ss_pred HHHHhhhcCCCCCCCccccCC-CCccchhhhhhcccccC
Q 017286 322 VYQQQQQQQPPQKPSSSHRRT-SSRDLDSQFANLSLKHK 359 (374)
Q Consensus 322 l~~qqq~~~~q~~~~~~~~~~-~s~~~~~qf~~~~~~~~ 359 (374)
-.....-. ..+..-.. ...+++.+|..+.....
T Consensus 173 ki~~~ea~-----a~a~~el~~~~~~~e~~l~~~~~~~~ 206 (221)
T PF04012_consen 173 KIEEMEAR-----AEASAELADSDQDLEAELEELERDSS 206 (221)
T ss_pred HHHHHHHH-----HHHHHHhccCcccHHHHHHHhcCCCc
Confidence 44443221 11111111 34569999999876544
No 134
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.42 E-value=17 Score=41.40 Aligned_cols=57 Identities=23% Similarity=0.220 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHH
Q 017286 243 QRSRVRKLQYIAELERNV--QSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLA 299 (374)
Q Consensus 243 qRSR~RKlqYI~ELErkV--q~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~ 299 (374)
.|-++|+-+--.|||+.- +-=++.+.+|..+...-++....|...|+.|.++|++|.
T Consensus 392 kkeie~rEaar~ElEkqRqlewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn 450 (1118)
T KOG1029|consen 392 KKEIERREAAREELEKQRQLEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLN 450 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555666432 222223333333333333334444444455555555544
No 135
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=80.41 E-value=28 Score=40.62 Aligned_cols=60 Identities=25% Similarity=0.236 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 266 EGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQ 325 (374)
Q Consensus 266 E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~q 325 (374)
+...+..++..|.++...|...++.|+..++.+..+..-.+-.-+.++.+|-.|+.-.++
T Consensus 395 ~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~ 454 (1074)
T KOG0250|consen 395 ELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIEN 454 (1074)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444444444443333333333455555555554433
No 136
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=79.74 E-value=9.1 Score=30.24 Aligned_cols=42 Identities=21% Similarity=0.252 Sum_probs=25.5
Q ss_pred HHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHH
Q 017286 264 QAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIK 305 (374)
Q Consensus 264 Q~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lk 305 (374)
+.+...+..++..++++...|..||.+|+.++..|.....+.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~~~rIe 64 (85)
T TIGR02209 23 QHQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSRHERIE 64 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 344555555666666666666777777777776666544433
No 137
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=79.69 E-value=22 Score=31.16 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Q 017286 254 AELERNVQSLQAEGTEVSAELEFL 277 (374)
Q Consensus 254 ~ELErkVq~LQ~E~a~Ls~~i~~L 277 (374)
.+|+..++.|+.++.++..+|..|
T Consensus 40 d~L~~~l~~L~~q~~s~~qr~~eL 63 (107)
T PF09304_consen 40 DQLRNALQSLQAQNASRNQRIAEL 63 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444
No 138
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=79.40 E-value=10 Score=43.81 Aligned_cols=84 Identities=21% Similarity=0.250 Sum_probs=48.8
Q ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 242 AQRSRVRKLQ-------YIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLER 314 (374)
Q Consensus 242 AqRSR~RKlq-------YI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~ 314 (374)
+|--++|+.- .|..|-.++..|+.|..+...+++.|..++..|.+++..|-..+..+.--.-.+|+.++.+..
T Consensus 285 eQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL~~~~ellq~~se~~E~en~Sl~~ 364 (1195)
T KOG4643|consen 285 EQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQLDGQMELLQIFSENEELENESLQV 364 (1195)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcchhhhhhhHHH
Confidence 4445555554 334444444444445555555555555555555555555555555555545566788888888
Q ss_pred HHHHHHH--HHHH
Q 017286 315 EIGRLRV--VYQQ 325 (374)
Q Consensus 315 Ei~RLr~--l~~q 325 (374)
|.+.|.. +|.+
T Consensus 365 e~eqLts~ralkl 377 (1195)
T KOG4643|consen 365 ENEQLTSDRALKL 377 (1195)
T ss_pred HHHHhhhHHHHHH
Confidence 8888877 6655
No 139
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=79.40 E-value=27 Score=28.13 Aligned_cols=51 Identities=25% Similarity=0.317 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHH
Q 017286 251 QYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQE 301 (374)
Q Consensus 251 qYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~ 301 (374)
.-|.+|=..-+.|....-.+...|..|..+...+..+...|+.+++.++.+
T Consensus 12 e~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~ 62 (74)
T PF12329_consen 12 EQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKE 62 (74)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555666666666566666666666666655543
No 140
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.35 E-value=12 Score=42.45 Aligned_cols=48 Identities=25% Similarity=0.342 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHH
Q 017286 251 QYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESL 298 (374)
Q Consensus 251 qYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL 298 (374)
.|.++|-+.++.+..++..|-.+++.+.++...|..||.+|+..++..
T Consensus 650 k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~ 697 (970)
T KOG0946|consen 650 KYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDF 697 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888888888888888888888888888888888888887777766
No 141
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=79.04 E-value=50 Score=36.96 Aligned_cols=8 Identities=25% Similarity=0.156 Sum_probs=4.2
Q ss_pred ccccccCC
Q 017286 10 IRNSLFTG 17 (374)
Q Consensus 10 ~~n~~~~~ 17 (374)
+.||.+=+
T Consensus 7 l~nf~s~~ 14 (1164)
T TIGR02169 7 LENFKSFG 14 (1164)
T ss_pred EeCeeeEC
Confidence 45665544
No 142
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=79.01 E-value=73 Score=31.80 Aligned_cols=50 Identities=30% Similarity=0.139 Sum_probs=23.6
Q ss_pred HHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 273 ELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVV 322 (374)
Q Consensus 273 ~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l 322 (374)
+|..+.++-..+..+..++|..|+.++.+..-.+...++++.++..|+.-
T Consensus 210 eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~e 259 (325)
T PF08317_consen 210 ELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAE 259 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555555555555554444444444444444444443
No 143
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=78.73 E-value=33 Score=32.27 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 017286 240 QFAQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFL 277 (374)
Q Consensus 240 qSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L 277 (374)
-+-+-.+..++.+...||.++..-..+...+..+|..|
T Consensus 99 L~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~L 136 (190)
T PF05266_consen 99 LSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKEL 136 (190)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 44444555555556666666654433333444433333
No 144
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=78.45 E-value=17 Score=33.18 Aligned_cols=40 Identities=35% Similarity=0.385 Sum_probs=26.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 284 LSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVY 323 (374)
Q Consensus 284 L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~ 323 (374)
+..+++.++..++.+..+-.-++...++|++.++.|-.-|
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455566666666666665557777888888888775543
No 145
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=78.42 E-value=8 Score=39.84 Aligned_cols=65 Identities=18% Similarity=0.223 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQ 324 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~ 324 (374)
++|||.||+..+.-++ .|+.++..|.=+=..||.-|..++.+.-...-+++.+.+|++|+|....
T Consensus 121 v~EveekykkaMvsna-------QLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s 185 (405)
T KOG2010|consen 121 VSEVEEKYKKAMVSNA-------QLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCS 185 (405)
T ss_pred hHHHHHHHHHHHHHHH-------hhcccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777775444433 3445555556666677777777766666666678888888888886543
No 146
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=78.40 E-value=13 Score=41.38 Aligned_cols=46 Identities=24% Similarity=0.320 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHH
Q 017286 254 AELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLA 299 (374)
Q Consensus 254 ~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~ 299 (374)
.||+++|..|+.+....-.+|..++++...|+.....|..|++.+.
T Consensus 561 ~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~ 606 (717)
T PF10168_consen 561 EEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAK 606 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777666666666666666666555555555555443
No 147
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=78.02 E-value=34 Score=37.48 Aligned_cols=59 Identities=24% Similarity=0.270 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHH
Q 017286 248 RKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKC 306 (374)
Q Consensus 248 RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkd 306 (374)
...+.+.+|...|+.|..++..+..++..+......+..|..+.+...+.++++..+++
T Consensus 325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~ 383 (594)
T PF05667_consen 325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKK 383 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555565555555555555555555555555555555555555555544443
No 148
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=77.91 E-value=20 Score=31.77 Aligned_cols=53 Identities=19% Similarity=0.172 Sum_probs=28.9
Q ss_pred HHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017286 274 LEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQQ 326 (374)
Q Consensus 274 i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~qq 326 (374)
-+.+++++..=..|-.+||-||+-|+.+..-.+.+++.|.+-|.-|-....|+
T Consensus 13 w~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqE 65 (134)
T PF08232_consen 13 WHRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQE 65 (134)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555556666666666666665555555555555555554444443
No 149
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=77.81 E-value=17 Score=32.79 Aligned_cols=73 Identities=23% Similarity=0.266 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCL-----EHEVLEREIGRLRVVYQQ 325 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda-----~~E~L~~Ei~RLr~l~~q 325 (374)
+..|...+...+.+...+..++..+..++..+...|..|+.+...+....++.|- ..+.|+++|..|+.-+..
T Consensus 93 ~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~ 170 (177)
T PF13870_consen 93 LERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIKELERKVEI 170 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777888888888888888888999999999888888777777653 356677788777776554
No 150
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=77.78 E-value=11 Score=41.94 Aligned_cols=66 Identities=29% Similarity=0.326 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhh
Q 017286 255 ELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLI----KCLEHEVLEREIGRLRVVYQQQQQ 328 (374)
Q Consensus 255 ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~l----kda~~E~L~~Ei~RLr~l~~qqq~ 328 (374)
||..+|..|.+....|+.+|..|+++++ +|..+|..|.+.++- ...+-..|+ |.++.|+....|.+
T Consensus 443 ELRsqis~l~~~Er~lk~eL~qlr~ene-------~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~-eE~~~R~~lEkQL~ 512 (697)
T PF09726_consen 443 ELRSQISSLTNNERSLKSELSQLRQENE-------QLQNKLQNLVQARQQDKQSLQQLEKRLA-EERRQRASLEKQLQ 512 (697)
T ss_pred HHHHHHhhccccchHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 4555555555555556666666554444 444455544443332 222333333 33456666666554
No 151
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=77.64 E-value=9.4 Score=29.74 Aligned_cols=36 Identities=19% Similarity=0.375 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQ 302 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~ 302 (374)
|.|||.+|..|.+.+ +.+ ..||.+|+..++.+.+..
T Consensus 2 i~elEn~~~~~~~~i-------~tv-------k~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 2 IDELENELPRIESSI-------NTV-------KKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHH-------HHH-------HHHHHHHHHHHHHHHHHH
Confidence 455666555555544 333 456666666666665543
No 152
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=77.62 E-value=55 Score=36.44 Aligned_cols=10 Identities=10% Similarity=0.192 Sum_probs=5.7
Q ss_pred cccccc-cCCC
Q 017286 9 NIRNSL-FTGK 18 (374)
Q Consensus 9 ~~~n~~-~~~k 18 (374)
.|.||+ |-|+
T Consensus 6 ~~~nf~s~~~~ 16 (1179)
T TIGR02168 6 ELAGFKSFADP 16 (1179)
T ss_pred EEeCccccCCC
Confidence 356777 5444
No 153
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=77.61 E-value=17 Score=30.16 Aligned_cols=72 Identities=26% Similarity=0.263 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 248 RKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSM---ENKALKQRLESLAQEQLIKCLEHEVLEREIGRL 319 (374)
Q Consensus 248 RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~---EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RL 319 (374)
--+..|.+|..+...|+.+...|.++...+..+-..+.. +-.+|+.++..+..+..-.+.....++.++..|
T Consensus 26 ~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 26 EDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888999999999999999999999888777765 467888888888887666666666666666544
No 154
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=77.55 E-value=11 Score=36.85 Aligned_cols=64 Identities=19% Similarity=0.293 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017286 250 LQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQQQ 327 (374)
Q Consensus 250 lqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~qqq 327 (374)
.+|.+-.+|+..+++..-..= ...+.++++|+..|+.+...-....+.|++|+..||.++.+..
T Consensus 193 ~~y~err~rNN~A~~kSR~~~--------------k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~~ 256 (269)
T KOG3119|consen 193 PEYKERRRRNNEAVRKSRDKR--------------KQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQLP 256 (269)
T ss_pred HHHHHHHHhhhHHHHHhhhhH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 356666666665544322222 2333566666666666655555567778888888888887743
No 155
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=77.13 E-value=12 Score=37.48 Aligned_cols=82 Identities=23% Similarity=0.183 Sum_probs=51.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 232 TETKRAKQQFAQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEV 311 (374)
Q Consensus 232 ~DpKRaKRqSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~ 311 (374)
+-|||.+-+-|... +.+.+.+++..+.+...|..+|..|+.+......|...|..+++..+........+...
T Consensus 216 V~P~~~~l~~a~~~-------l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~ 288 (344)
T PF12777_consen 216 VEPKRQKLEEAEAE-------LEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISG 288 (344)
T ss_dssp CCHHHHHHHHCCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhh
Confidence 45777665444433 33445555555555666666666666666666777777777777776666656667777
Q ss_pred HHHHHHHHH
Q 017286 312 LEREIGRLR 320 (374)
Q Consensus 312 L~~Ei~RLr 320 (374)
|..|..|-.
T Consensus 289 L~~E~~RW~ 297 (344)
T PF12777_consen 289 LSGEKERWS 297 (344)
T ss_dssp CHHHHHCCH
T ss_pred hcchhhhHH
Confidence 887776644
No 156
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=77.13 E-value=42 Score=35.53 Aligned_cols=52 Identities=25% Similarity=0.267 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHH
Q 017286 251 QYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQ 302 (374)
Q Consensus 251 qYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~ 302 (374)
+-...||..++.|++++.+|..+|.........+...+..+..+|+.|+.+.
T Consensus 59 ~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 59 DQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4567788888888888888888888887777777777777777777777665
No 157
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=77.09 E-value=4 Score=32.18 Aligned_cols=30 Identities=30% Similarity=0.314 Sum_probs=17.2
Q ss_pred HhhHHHHHHHHHHHHHhHHHHHhhHHHHHH
Q 017286 265 AEGTEVSAELEFLNQQNLILSMENKALKQR 294 (374)
Q Consensus 265 ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~r 294 (374)
.|+..|+.+|..|..++..|..||.-||..
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355555555655555555566666665543
No 158
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=76.65 E-value=8.2 Score=32.92 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=11.8
Q ss_pred HHHHHHHHHhHHHHHhhHHHHHHHHHHH
Q 017286 272 AELEFLNQQNLILSMENKALKQRLESLA 299 (374)
Q Consensus 272 ~~i~~L~~~~~~L~~EN~~LK~rL~aL~ 299 (374)
.++..++++...|..+|..|+.+|+.|.
T Consensus 34 ~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 34 DQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333333344444444444444443
No 159
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=76.61 E-value=27 Score=39.17 Aligned_cols=68 Identities=21% Similarity=0.290 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 255 ELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVV 322 (374)
Q Consensus 255 ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l 322 (374)
..+..+..|.+....|..+|+--..-...|.-||++||.++.+-..+.-.-+.....|+.|++.|+..
T Consensus 584 ~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~ 651 (786)
T PF05483_consen 584 KKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKK 651 (786)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33444444445555555555544444444555666665555554444433344445555555555443
No 160
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=76.58 E-value=34 Score=32.53 Aligned_cols=46 Identities=17% Similarity=0.254 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHH
Q 017286 254 AELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLA 299 (374)
Q Consensus 254 ~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~ 299 (374)
..+|.+|..|+.++..+...|..|+..-.....--..+..+|..|.
T Consensus 137 e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~ 182 (237)
T PF00261_consen 137 EAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLE 182 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Confidence 3445555555555555555555544333333333333333444433
No 161
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=76.57 E-value=16 Score=31.80 Aligned_cols=50 Identities=32% Similarity=0.323 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 268 TEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQ 324 (374)
Q Consensus 268 a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~ 324 (374)
..|..+|..|+++...|..+=.+||..|..|.. +|-+|+-|-++||....
T Consensus 4 ~elfd~l~~le~~l~~l~~el~~LK~~~~el~E-------EN~~L~iEN~~Lr~~l~ 53 (110)
T PRK13169 4 KEIFDALDDLEQNLGVLLKELGALKKQLAELLE-------ENTALRLENDKLRERLE 53 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 345555666666655566666666666665555 34444444444554444
No 162
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=76.55 E-value=14 Score=35.42 Aligned_cols=13 Identities=38% Similarity=0.468 Sum_probs=6.4
Q ss_pred HHHHhhHHHHHHH
Q 017286 283 ILSMENKALKQRL 295 (374)
Q Consensus 283 ~L~~EN~~LK~rL 295 (374)
.|..||..|+.-|
T Consensus 97 ~l~~en~~L~~lL 109 (276)
T PRK13922 97 QLEAENARLRELL 109 (276)
T ss_pred HHHHHHHHHHHHh
Confidence 3455555555433
No 163
>PHA02562 46 endonuclease subunit; Provisional
Probab=76.43 E-value=25 Score=36.46 Aligned_cols=27 Identities=19% Similarity=0.348 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 017286 251 QYIAELERNVQSLQAEGTEVSAELEFL 277 (374)
Q Consensus 251 qYI~ELErkVq~LQ~E~a~Ls~~i~~L 277 (374)
.|+.+++.+++.|+.+...+..++..+
T Consensus 174 ~~~~e~~~~i~~l~~~i~~l~~~i~~~ 200 (562)
T PHA02562 174 DKIRELNQQIQTLDMKIDHIQQQIKTY 200 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555543
No 164
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=76.36 E-value=9.9 Score=40.60 Aligned_cols=51 Identities=18% Similarity=0.307 Sum_probs=27.4
Q ss_pred HHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 264 QAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRV 321 (374)
Q Consensus 264 Q~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~ 321 (374)
|...++|..+|+.|.++..+|...+..+..+|+.|+. +++.|+.+++.++.
T Consensus 75 Q~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEa-------E~~~Lk~Ql~a~~~ 125 (475)
T PRK13729 75 QVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQ-------DNAALAEQVKALGA 125 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH-------HHHHHHHHHHhhhc
Confidence 3445555555555555555555666666666664444 45555555544443
No 165
>PF15294 Leu_zip: Leucine zipper
Probab=75.88 E-value=16 Score=36.56 Aligned_cols=45 Identities=24% Similarity=0.364 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHH
Q 017286 256 LERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQ 300 (374)
Q Consensus 256 LErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q 300 (374)
|-..+..|+.||..|+.++..++.++....-|++.|+.+|..|.-
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888999999999999999999999999999999999988876
No 166
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=75.60 E-value=73 Score=30.01 Aligned_cols=12 Identities=42% Similarity=0.750 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 017286 309 HEVLEREIGRLR 320 (374)
Q Consensus 309 ~E~L~~Ei~RLr 320 (374)
.|+..+||.||+
T Consensus 154 ke~~~~ei~~lk 165 (190)
T PF05266_consen 154 KEAKDKEISRLK 165 (190)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 167
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=75.54 E-value=15 Score=32.62 Aligned_cols=48 Identities=25% Similarity=0.316 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQ 300 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q 300 (374)
...+|+.=..=+.|-++|.++|++|+-++..+..=|..|+-||+-|+-
T Consensus 13 w~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~ 60 (134)
T PF08232_consen 13 WHRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEY 60 (134)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777777778899999999999999999999999999988876554
No 168
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=75.53 E-value=24 Score=33.52 Aligned_cols=74 Identities=26% Similarity=0.246 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH--hHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHH---HHHHHHHHHHH
Q 017286 252 YIAELERNVQSLQAEGTEVSAELEFLNQQ--NLILSMENKALKQRLESLAQE-QLIKCLEHEVLER---EIGRLRVVYQQ 325 (374)
Q Consensus 252 YI~ELErkVq~LQ~E~a~Ls~~i~~L~~~--~~~L~~EN~~LK~rL~aL~q~-~~lkda~~E~L~~---Ei~RLr~l~~q 325 (374)
-|..|+.+|++|+.+.+.+-++|..|+.. ...|..+-.+|+.....++.- +-||.+.++.-.+ -|.|.++-|+.
T Consensus 87 ~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v~~~y~~~~~ 166 (201)
T KOG4603|consen 87 KIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQVYREYQKYCK 166 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 36668888888888888888888877653 223333444555554444432 4456665543333 34444444444
No 169
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=75.40 E-value=10 Score=29.15 Aligned_cols=30 Identities=30% Similarity=0.413 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHhHHHHHhhHHHHHHHHHH
Q 017286 269 EVSAELEFLNQQNLILSMENKALKQRLESL 298 (374)
Q Consensus 269 ~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL 298 (374)
.+..+++.|+.+...|..||..|+.+++.|
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444555555555555555
No 170
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=75.21 E-value=47 Score=37.08 Aligned_cols=35 Identities=14% Similarity=0.244 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 017286 244 RSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLN 278 (374)
Q Consensus 244 RSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~ 278 (374)
++|..=++-|..||+|+...+.--+.|-.+|....
T Consensus 481 ~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eEr 515 (697)
T PF09726_consen 481 QARQQDKQSLQQLEKRLAEERRQRASLEKQLQEER 515 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555554455544444443
No 171
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=75.18 E-value=25 Score=38.53 Aligned_cols=91 Identities=16% Similarity=0.128 Sum_probs=57.1
Q ss_pred chhhhHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHH-HHHHHH
Q 017286 231 DTETKRAKQ-----------QFAQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALK-QRLESL 298 (374)
Q Consensus 231 ~~DpKRaKR-----------qSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK-~rL~aL 298 (374)
..||++|.+ +.....+..-.+-+.-|+.++..|+.+......++....+++..+..++..+. ++|..+
T Consensus 163 ~~dP~~Aa~iaN~la~~Y~~~~~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l 242 (754)
T TIGR01005 163 SEDPKLAAAIPDAIAAAYIAGQGAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAEL 242 (754)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHH
Confidence 478999885 22222222233446677888888888888888888888777777666665554 777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 017286 299 AQEQLIKCLEHEVLEREIGRLRV 321 (374)
Q Consensus 299 ~q~~~lkda~~E~L~~Ei~RLr~ 321 (374)
.++.....+...+.+...+.|+.
T Consensus 243 ~~ql~~a~~~~~~a~a~~~~l~~ 265 (754)
T TIGR01005 243 NTELSRARANRAAAEGTADSVKK 265 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 76655444444444444444444
No 172
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.15 E-value=13 Score=30.40 Aligned_cols=44 Identities=20% Similarity=0.107 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHH
Q 017286 252 YIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRL 295 (374)
Q Consensus 252 YI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL 295 (374)
-|.|||.+|-.=+..+.+|+..|+..+..-..+...=+.|-.|+
T Consensus 9 Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl 52 (72)
T COG2900 9 RIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKL 52 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666555666666655554443333333333333333
No 173
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=74.79 E-value=56 Score=32.05 Aligned_cols=12 Identities=42% Similarity=0.592 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHH
Q 017286 309 HEVLEREIGRLR 320 (374)
Q Consensus 309 ~E~L~~Ei~RLr 320 (374)
.+.|+.||+.|+
T Consensus 286 ~~~l~~ei~~L~ 297 (297)
T PF02841_consen 286 AEKLQKEIQDLQ 297 (297)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC
Confidence 455666776664
No 174
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=74.57 E-value=28 Score=42.95 Aligned_cols=60 Identities=35% Similarity=0.416 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHH
Q 017286 240 QFAQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLA 299 (374)
Q Consensus 240 qSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~ 299 (374)
..++|++.-=+.-..+.|+++..|++|..+|...+..+.+.+..+..|..++..+|..+-
T Consensus 1649 e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~ 1708 (1930)
T KOG0161|consen 1649 EDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELN 1708 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 788888888888889999999999999999999999999998888888888888888755
No 175
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=74.50 E-value=18 Score=35.71 Aligned_cols=63 Identities=30% Similarity=0.221 Sum_probs=43.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 017286 259 NVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQQQQQ 329 (374)
Q Consensus 259 kVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~qqq~~ 329 (374)
-+.........+...+..+ ..+..||.+||.+++.+.+... .-+.|++|-+|||.+..-.+-.
T Consensus 50 v~~~p~~~v~~~~~~~~~~----~~~~~en~~Lk~~l~~~~~~~~----~~~~l~~EN~~Lr~lL~~~~~~ 112 (284)
T COG1792 50 VVAAPFEFVDGVLEFLKSL----KDLALENEELKKELAELEQLLE----EVESLEEENKRLKELLDFKESS 112 (284)
T ss_pred HHhhHHHHHHhHHHHHHHh----HHHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCCcccc
Confidence 3333334444444444443 4577899999999988877543 6778999999999988775543
No 176
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=74.26 E-value=68 Score=29.07 Aligned_cols=61 Identities=18% Similarity=0.206 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHH
Q 017286 240 QFAQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQ 300 (374)
Q Consensus 240 qSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q 300 (374)
+.+-+--+-+.+.|..|+..+..|..+...|..+|..+..++..|.-+=...+.||..|+.
T Consensus 41 e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~ 101 (140)
T PF10473_consen 41 ECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELES 101 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566666666666666666666666666666655555555555555555555554
No 177
>PF08703 PLC-beta_C: PLC-beta C terminal; InterPro: IPR014815 This domain corresponds to the alpha helical C-terminal domain of phospholipase C beta. ; GO: 0004435 phosphatidylinositol phospholipase C activity, 0005509 calcium ion binding, 0016042 lipid catabolic process; PDB: 1JAD_A.
Probab=74.15 E-value=80 Score=29.95 Aligned_cols=80 Identities=28% Similarity=0.294 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-----HHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHH----HH-HH
Q 017286 239 QQFAQRSRVRKLQYIAELERNVQSLQAEGTEVSA-----ELEFLNQQNLILSMENKALKQRLESLAQEQLI----KC-LE 308 (374)
Q Consensus 239 RqSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~-----~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~l----kd-a~ 308 (374)
++...-..+|+-+|..+.+.+.+.+...+..|.. +.+.|..-...+..|.++||..|+.=..+.+- +| ..
T Consensus 15 ~q~~eL~~l~~eq~~~e~e~ke~H~~e~~~kl~el~~e~Q~~QlK~LKe~~EkE~KElkK~L~~kr~e~I~~k~~~dK~e 94 (185)
T PF08703_consen 15 KQEQELLKLREEQYESEKELKEEHLKEQFQKLEELARECQAAQLKKLKETCEKETKELKKKLDRKRLESIKEKKTKDKDE 94 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHhhcccHHH
Confidence 3777788999999999999999998888777754 33444444556678889998888776555432 11 23
Q ss_pred HHHHHHHHHH
Q 017286 309 HEVLEREIGR 318 (374)
Q Consensus 309 ~E~L~~Ei~R 318 (374)
.+.+++||.+
T Consensus 95 ~er~KrEin~ 104 (185)
T PF08703_consen 95 QERLKREINR 104 (185)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5667777654
No 178
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=73.98 E-value=47 Score=34.08 Aligned_cols=76 Identities=24% Similarity=0.159 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Q 017286 250 LQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQE--------QLIKCLEHEVLEREIGRLRV 321 (374)
Q Consensus 250 lqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~--------~~lkda~~E~L~~Ei~RLr~ 321 (374)
.+.+.+|+...+.||........+++.+..-...-...-+.=|.||..|... ........+.|+++|.+.+.
T Consensus 3 ~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~~ 82 (330)
T PF07851_consen 3 EEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERRC 82 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHh
Confidence 4678899999999999998888877766544333333323333333333332 11234456778888888776
Q ss_pred HHHH
Q 017286 322 VYQQ 325 (374)
Q Consensus 322 l~~q 325 (374)
....
T Consensus 83 ~l~D 86 (330)
T PF07851_consen 83 QLFD 86 (330)
T ss_pred hHHH
Confidence 5554
No 179
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=73.61 E-value=47 Score=26.89 Aligned_cols=82 Identities=16% Similarity=0.204 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHhHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 017286 244 RSRVRKLQYIAELERNVQSLQAEGTEVSAELEFL-NQQNLILSMENKALKQRLESLAQEQL-IKCLEHEVLEREIGRLRV 321 (374)
Q Consensus 244 RSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L-~~~~~~L~~EN~~LK~rL~aL~q~~~-lkda~~E~L~~Ei~RLr~ 321 (374)
.-......++..|+..+..|+........+|... ..-...|..+-..|..+|+.....+. .-+...+.|..++..|+.
T Consensus 14 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~l~~ 93 (127)
T smart00502 14 KKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQEKLSH 93 (127)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566788889999999998888888888544 56688888888999999988876643 334557777778877776
Q ss_pred HHHH
Q 017286 322 VYQQ 325 (374)
Q Consensus 322 l~~q 325 (374)
+..-
T Consensus 94 ~~~~ 97 (127)
T smart00502 94 AINF 97 (127)
T ss_pred HHHH
Confidence 6544
No 180
>smart00338 BRLZ basic region leucin zipper.
Probab=73.48 E-value=30 Score=26.39 Aligned_cols=28 Identities=36% Similarity=0.463 Sum_probs=13.8
Q ss_pred HHHHHHHHhHHHHHhhHHHHHHHHHHHH
Q 017286 273 ELEFLNQQNLILSMENKALKQRLESLAQ 300 (374)
Q Consensus 273 ~i~~L~~~~~~L~~EN~~LK~rL~aL~q 300 (374)
.|..|+.+...|..||..|+.++..|..
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~ 54 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRR 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555555544443
No 181
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=73.40 E-value=10 Score=32.32 Aligned_cols=34 Identities=21% Similarity=0.201 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 017286 246 RVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQ 279 (374)
Q Consensus 246 R~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~ 279 (374)
-....+.+.+++.+++.|+.++..|..+|..|+.
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3444556666666666666666666666666644
No 182
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=73.28 E-value=20 Score=33.50 Aligned_cols=38 Identities=24% Similarity=0.350 Sum_probs=21.4
Q ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 278 NQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVV 322 (374)
Q Consensus 278 ~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l 322 (374)
++.+..|..-|.-|+++|+.+.. .|++|..||++|+.=
T Consensus 73 qqR~~~L~qvN~lLReQLEq~~~-------~N~~L~~dl~klt~~ 110 (182)
T PF15035_consen 73 QQRSEELAQVNALLREQLEQARK-------ANEALQEDLQKLTQD 110 (182)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 34456666666666666655544 455555555555443
No 183
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=73.18 E-value=15 Score=32.43 Aligned_cols=44 Identities=32% Similarity=0.215 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHH
Q 017286 256 LERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLA 299 (374)
Q Consensus 256 LErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~ 299 (374)
|=.+|.-|+..+.+|..+|.-|.++-..|..||..|+...+.|.
T Consensus 6 iFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR 49 (114)
T COG4467 6 IFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLR 49 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHH
Confidence 34567777777788888888888777778888887776655554
No 184
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=73.17 E-value=35 Score=31.50 Aligned_cols=77 Identities=18% Similarity=0.182 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 243 QRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVV 322 (374)
Q Consensus 243 qRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l 322 (374)
...++.=+..|..|-..|..-+.++..+..+|..+. ..|....+.|+.+...+..-..=..+..+.|++||++++..
T Consensus 102 ~~~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~---~~l~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~ 178 (184)
T PF05791_consen 102 QKDKEDLKEIIEDLQDQIQKNQDKVQALINELNDFK---DKLQKDSRNLKTDVDELQSILAGENGDIPQLQKQIENLNEE 178 (184)
T ss_dssp HT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGG
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHH
Confidence 566667777888888888888888888888777774 46778888999998888877777778899999999998764
No 185
>PRK02119 hypothetical protein; Provisional
Probab=73.12 E-value=17 Score=29.26 Aligned_cols=26 Identities=23% Similarity=0.144 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHH
Q 017286 252 YIAELERNVQSLQAEGTEVSAELEFL 277 (374)
Q Consensus 252 YI~ELErkVq~LQ~E~a~Ls~~i~~L 277 (374)
.+.+||.+|..|+..++-+-..|..|
T Consensus 3 ~~~~~e~Ri~~LE~rla~QE~tie~L 28 (73)
T PRK02119 3 IQQNLENRIAELEMKIAFQENLLEEL 28 (73)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777766655555544444
No 186
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=72.81 E-value=37 Score=30.40 Aligned_cols=40 Identities=30% Similarity=0.374 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALK 292 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK 292 (374)
+.+||.+|+.|+.++..+-.+|+.|++.+..|..+=-.|.
T Consensus 16 ~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~ 55 (143)
T PF12718_consen 16 AEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLE 55 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555444444444444444444443333333
No 187
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=72.66 E-value=43 Score=31.30 Aligned_cols=59 Identities=22% Similarity=0.169 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 017286 249 KLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCL 307 (374)
Q Consensus 249 KlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda 307 (374)
-+..+.|=.++...|..-|+-|..++......+..|+.|+..|...+..+..+...|+.
T Consensus 65 ~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~ 123 (182)
T PF15035_consen 65 ALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEA 123 (182)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566678888888999999999999999999999999999999988887777765
No 188
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=72.52 E-value=33 Score=38.07 Aligned_cols=27 Identities=33% Similarity=0.462 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQ 279 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~ 279 (374)
+-|||-|-|.|+.|++++..+|+.|++
T Consensus 95 L~ele~krqel~seI~~~n~kiEelk~ 121 (907)
T KOG2264|consen 95 LTELEVKRQELNSEIEEINTKIEELKR 121 (907)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 445555555555555555555554443
No 189
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=72.44 E-value=46 Score=29.79 Aligned_cols=56 Identities=21% Similarity=0.239 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh---HHHHHhhHHHHHHHHHHHHHH
Q 017286 247 VRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQN---LILSMENKALKQRLESLAQEQ 302 (374)
Q Consensus 247 ~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~---~~L~~EN~~LK~rL~aL~q~~ 302 (374)
.+|=+.|..|..+++.|+.++..+..+|..+.... ......|-.|..||+.|+.+.
T Consensus 31 ~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeel 89 (143)
T PF12718_consen 31 EQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEEL 89 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHH
Confidence 34556677777777777777777777766665432 233334557888888888763
No 190
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=72.26 E-value=27 Score=39.14 Aligned_cols=52 Identities=25% Similarity=0.310 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHH-HHHHHH
Q 017286 256 LERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQE-QLIKCL 307 (374)
Q Consensus 256 LErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~-~~lkda 307 (374)
|-.+|..|++|...+...++..+.++..|...|.+|+.-.+.++.+ ..+++-
T Consensus 32 ~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e 84 (717)
T PF09730_consen 32 LQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREE 84 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666666666666666666666544 344443
No 191
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=72.19 E-value=4.6 Score=43.79 Aligned_cols=54 Identities=30% Similarity=0.259 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHH
Q 017286 246 RVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQE 301 (374)
Q Consensus 246 R~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~ 301 (374)
|.=|=+.-+-+-|+-+. .=.-.|.++|..|.+++..|..||.+||.||..|+.+
T Consensus 285 RmIKNResA~~SRkKKK--Ey~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~E 338 (655)
T KOG4343|consen 285 RMIKNRESACQSRKKKK--EYMLGLEARLQALLSENEQLKKENATLKRQLDELVSE 338 (655)
T ss_pred HHHhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 33344444444444332 2345688899999999999999999999999999875
No 192
>PRK02224 chromosome segregation protein; Provisional
Probab=71.88 E-value=41 Score=37.23 Aligned_cols=22 Identities=14% Similarity=0.111 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAEL 274 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i 274 (374)
+.+|+..+..|..+...|..++
T Consensus 594 ~~~~~~~i~~~~~~~~~~~~~~ 615 (880)
T PRK02224 594 IRTLLAAIADAEDEIERLREKR 615 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 193
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.83 E-value=55 Score=33.26 Aligned_cols=66 Identities=21% Similarity=0.240 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 017286 255 ELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQQQQQQ 330 (374)
Q Consensus 255 ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~qqq~~~ 330 (374)
+++..+..|+.+++.++.+++ ...++|-+.|..|.+-.-.-..-.+.|+.||.++++++-.+++..
T Consensus 133 ~~~~~~~~l~~~va~v~q~~~----------~qq~Els~~L~~l~~~~~~~s~~~~k~esei~~Ik~lvln~~~f~ 198 (300)
T KOG2629|consen 133 KAAKSLNALMDEVAQVSQLLA----------TQQSELSRALASLKNTLVQLSRNIEKLESEINTIKQLVLNMSNFA 198 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcccccC
Confidence 344444555555555544433 333466666666666544555568899999999999988877754
No 194
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=71.83 E-value=19 Score=36.95 Aligned_cols=60 Identities=17% Similarity=0.140 Sum_probs=37.6
Q ss_pred HHHHHHhhHHHHHHHHHH-----HHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 260 VQSLQAEGTEVSAELEFL-----NQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVY 323 (374)
Q Consensus 260 Vq~LQ~E~a~Ls~~i~~L-----~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~ 323 (374)
++.|++....+.+-+-.. .+....|..||.+||.++..|+.+.+- .+.+++|-.+||.+.
T Consensus 33 ~e~~r~~~~d~~ap~~~~~~~p~~~~y~~L~~EN~~Lk~Ena~L~~~l~~----~e~l~~En~~Lr~ll 97 (337)
T PRK14872 33 YEKIQDTFVSLCSKFFPKFRQGPSSHALVLETENFLLKERIALLEERLKS----YEEANQTPPLFSEIL 97 (337)
T ss_pred HHHHHHhhHHHhchhhHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhh
Confidence 444555555555544331 245677888899998888888776553 344456666677654
No 195
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=71.59 E-value=48 Score=36.34 Aligned_cols=84 Identities=17% Similarity=0.149 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 243 QRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVV 322 (374)
Q Consensus 243 qRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l 322 (374)
.|.=+-|++.+..+..+.++|..+.++|..-+..++.=-..|..-+.++-..|+-|..+.-.|+-+.|.|+.|+.+||..
T Consensus 244 n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~ 323 (581)
T KOG0995|consen 244 NRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQ 323 (581)
T ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555666666666666667676666666665666667777777888888888888889999999999999987
Q ss_pred HHHh
Q 017286 323 YQQQ 326 (374)
Q Consensus 323 ~~qq 326 (374)
...|
T Consensus 324 Ie~Q 327 (581)
T KOG0995|consen 324 IELQ 327 (581)
T ss_pred HHhc
Confidence 7665
No 196
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=71.44 E-value=77 Score=29.35 Aligned_cols=85 Identities=16% Similarity=0.158 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHhHH----HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 240 QFAQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFL-NQQNLI----LSMENKALKQRLESLAQEQLIKCLEHEVLER 314 (374)
Q Consensus 240 qSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L-~~~~~~----L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~ 314 (374)
.-+.++-.+-+..-..||+++..++.++..+..+.... ...... .-.+-..+..++..+.++..-.....+.|+.
T Consensus 40 ~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~ 119 (221)
T PF04012_consen 40 RKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKE 119 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555666667777777777777766655443 211211 1233344455555555555444555555555
Q ss_pred HHHHHHHHHH
Q 017286 315 EIGRLRVVYQ 324 (374)
Q Consensus 315 Ei~RLr~l~~ 324 (374)
.|..|+.-+.
T Consensus 120 ~l~~l~~kl~ 129 (221)
T PF04012_consen 120 QLEELEAKLE 129 (221)
T ss_pred HHHHHHHHHH
Confidence 5555544433
No 197
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=71.11 E-value=81 Score=28.59 Aligned_cols=52 Identities=21% Similarity=0.181 Sum_probs=25.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 261 QSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVL 312 (374)
Q Consensus 261 q~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L 312 (374)
.+|+.++..|...+..|..+...|+.|+..|.+.++-+.....=-+..+..+
T Consensus 55 e~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~ 106 (140)
T PF10473_consen 55 ETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSL 106 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3344444444444444555555555555555555555544443333333333
No 198
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=70.91 E-value=46 Score=33.19 Aligned_cols=74 Identities=23% Similarity=0.325 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHH----HHH-HHHHHHH---------HHHHHHHH
Q 017286 249 KLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLE----SLA-QEQLIKC---------LEHEVLER 314 (374)
Q Consensus 249 KlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~----aL~-q~~~lkd---------a~~E~L~~ 314 (374)
+.-.|.++|+-|+ .-+..+..+|..++++...|..+...|..+|+ .|+ .++.|+- .+.|.|+.
T Consensus 156 r~~e~~~iE~~l~---~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~ 232 (267)
T PF10234_consen 156 RPLELNEIEKALK---EAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEE 232 (267)
T ss_pred CCcCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 4445666666554 44555566666666666666666555544332 222 2233333 26788999
Q ss_pred HHHHHHHHHHH
Q 017286 315 EIGRLRVVYQQ 325 (374)
Q Consensus 315 Ei~RLr~l~~q 325 (374)
|++.|=..|..
T Consensus 233 EL~~lY~~Y~~ 243 (267)
T PF10234_consen 233 ELQKLYEIYVE 243 (267)
T ss_pred HHHHHHHHHHH
Confidence 98877766654
No 199
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=70.89 E-value=44 Score=34.05 Aligned_cols=39 Identities=33% Similarity=0.423 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHH
Q 017286 254 AELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALK 292 (374)
Q Consensus 254 ~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK 292 (374)
.+|..+|..|+.++..|..++..+...+..|..||++|+
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr 61 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALR 61 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444443
No 200
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=70.65 E-value=33 Score=29.65 Aligned_cols=48 Identities=19% Similarity=0.180 Sum_probs=31.4
Q ss_pred HhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 265 AEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLERE 315 (374)
Q Consensus 265 ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~E 315 (374)
.....+..+++.++.+...|..+|..|+.+++.|... +|++.|.-+.+
T Consensus 50 ~~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg---~~~i~e~AR~~ 97 (117)
T COG2919 50 ADVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG---RDYIEERARSE 97 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---HHHHHHHHHHH
Confidence 3455556666667777777788888888888877776 45555444443
No 201
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=70.33 E-value=31 Score=38.97 Aligned_cols=51 Identities=27% Similarity=0.312 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHH-------HHHHHHHHhHHHHHhhHHHHHHHHHHHHHH
Q 017286 252 YIAELERNVQSLQAEGTEVSA-------ELEFLNQQNLILSMENKALKQRLESLAQEQ 302 (374)
Q Consensus 252 YI~ELErkVq~LQ~E~a~Ls~-------~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~ 302 (374)
.|.|+..++..+.+|++.|+. -|..|.........|-..|+.||++++.+.
T Consensus 93 ~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken 150 (769)
T PF05911_consen 93 KLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKEN 150 (769)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 466666666777777777765 344555566666666777777777777653
No 202
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=70.25 E-value=56 Score=26.40 Aligned_cols=75 Identities=25% Similarity=0.317 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 251 QYIAELERNVQSLQA--EGTEVSAELEFLNQQNLILSMENKALKQRLESL---AQEQLIKCLEHEVLEREIGRLRVVYQQ 325 (374)
Q Consensus 251 qYI~ELErkVq~LQ~--E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL---~q~~~lkda~~E~L~~Ei~RLr~l~~q 325 (374)
..|..|++.|..|-+ ....|..+|..+......|-.+-+.+-.+|..+ .......-...+.|.+|...+-.-|+.
T Consensus 10 ~~v~~l~k~~~~lGt~~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~~~~~~~~~~~k~~~~KL~~df~~~l~~fq~ 89 (102)
T PF14523_consen 10 QNVSQLEKLVNQLGTPRDSQELREKIHQLIQKTNQLIKEISELLKKLNSLSSDRSNDRQQKLQREKLSRDFKEALQEFQK 89 (102)
T ss_dssp HHHHHHHHHHHHH-SSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888876 677888888888888777777777766666665 111222223344555555444444443
No 203
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=69.94 E-value=99 Score=29.11 Aligned_cols=104 Identities=13% Similarity=0.153 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 017286 246 RVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEH----EVLEREIGRLRV 321 (374)
Q Consensus 246 R~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~----E~L~~Ei~RLr~ 321 (374)
|..-...+..|+..+..++..+..|..+|..|+++...+...-..|+-|......+..+...+. ......++|+..
T Consensus 94 k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~ 173 (219)
T TIGR02977 94 KQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYER 173 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 3444556777888999999999999999999999999999999999999988887777776652 344556666655
Q ss_pred HHHHhhhcCCCCCCCccccCCCCccchhhhhhcc
Q 017286 322 VYQQQQQQQPPQKPSSSHRRTSSRDLDSQFANLS 355 (374)
Q Consensus 322 l~~qqq~~~~q~~~~~~~~~~~s~~~~~qf~~~~ 355 (374)
-..+-.-. .+ ... -....+||.+|+.|.
T Consensus 174 ki~~~ea~-ae--a~~---~~~~~~l~~~l~~l~ 201 (219)
T TIGR02977 174 RVDELEAQ-AE--SYD---LGRKPSLEDEFAELE 201 (219)
T ss_pred HHHHHHHH-HH--Hhh---ccCCCCHHHHHHHhc
Confidence 43321111 00 000 012467999999985
No 204
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=69.88 E-value=60 Score=37.71 Aligned_cols=64 Identities=23% Similarity=0.242 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-----HHHHHHhHHHHHhhHHHHHHHHHHHHHH
Q 017286 239 QQFAQRSRVRKLQYIAELERNVQSLQAEGTEVSAEL-----EFLNQQNLILSMENKALKQRLESLAQEQ 302 (374)
Q Consensus 239 RqSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i-----~~L~~~~~~L~~EN~~LK~rL~aL~q~~ 302 (374)
|+--.-+.+|.-+|-+|+|++-+.|......|..-+ +.+.+-+..+..|-++||.+++.-..+.
T Consensus 1037 rq~~el~~~~~~~~~~e~e~k~~hl~~~~~~l~kl~~eaq~~Q~k~LK~~~e~e~kElk~~l~kkr~e~ 1105 (1189)
T KOG1265|consen 1037 RQTQELLEMRREQYEEEFELKEEHLKEQISLLRKLLSEAQTNQTKALKESLEKETKELKKKLDKKRMED 1105 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 788888999999999999999999988777766533 3444556677788899988877655543
No 205
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=69.76 E-value=1.1e+02 Score=31.13 Aligned_cols=67 Identities=24% Similarity=0.157 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHH
Q 017286 240 QFAQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKC 306 (374)
Q Consensus 240 qSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkd 306 (374)
+++||-.--.+.-|.|+|...+.=+..+...-++-..+++....|..||--|.++|......+..|+
T Consensus 182 E~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~ke 248 (305)
T PF14915_consen 182 ESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKE 248 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999888877778777788888888888888999999988888777666655
No 206
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=69.70 E-value=1.5 Score=47.92 Aligned_cols=41 Identities=17% Similarity=0.359 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 017286 240 QFAQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQN 281 (374)
Q Consensus 240 qSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~ 281 (374)
..+.+.| .|+.-+.+|.++|+.|+..|+.|-.++..|+.+.
T Consensus 315 ~~ve~YK-kKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel 355 (713)
T PF05622_consen 315 NEVEKYK-KKLEDLEDLKRQVKELEEDNAVLLETKAMLEEEL 355 (713)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557777 5999999999999999999988888777776553
No 207
>PRK14127 cell division protein GpsB; Provisional
Probab=69.45 E-value=31 Score=30.09 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=11.7
Q ss_pred HhhHHHHHHHHHHHHHH
Q 017286 286 MENKALKQRLESLAQEQ 302 (374)
Q Consensus 286 ~EN~~LK~rL~aL~q~~ 302 (374)
.-|-.|..||..|++..
T Consensus 85 ~tn~DiLKRls~LEk~V 101 (109)
T PRK14127 85 ATNYDILKRLSNLEKHV 101 (109)
T ss_pred cchHHHHHHHHHHHHHH
Confidence 35666777888887754
No 208
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.27 E-value=44 Score=34.64 Aligned_cols=63 Identities=24% Similarity=0.231 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 239 QQFAQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLE 313 (374)
Q Consensus 239 RqSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~ 313 (374)
=.||-+-++|-. +|.++..|++|.++|+..=.. |..-.++|+.-++.|+|+.+.-..-.+-|+
T Consensus 211 visa~~eklR~r-----~eeeme~~~aeq~slkRt~Ee-------L~~G~~kL~~~~etLEqq~~~L~~niDIL~ 273 (365)
T KOG2391|consen 211 VISAVREKLRRR-----REEEMERLQAEQESLKRTEEE-------LNIGKQKLVAMKETLEQQLQSLQKNIDILK 273 (365)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhHHH-------HHhhHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 355555555432 233444444444444443333 333444444444444444443333334333
No 209
>COG3028 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.18 E-value=39 Score=32.05 Aligned_cols=92 Identities=24% Similarity=0.382 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHH------HHHHHHHHHH
Q 017286 237 AKQQFAQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQ------EQLIKCLEHE 310 (374)
Q Consensus 237 aKRqSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q------~~~lkda~~E 310 (374)
|+|--..=.|-|.+|||..|=|.. .+..+.+-|..+.... ....++-.+|+.+.. +.-|-+.+++
T Consensus 70 aqri~~~~arrRQlQyIGKlmR~~-----DvepI~~~Ldkl~~~~----~q~~a~lHklE~~RdrLia~GD~Alt~~l~~ 140 (187)
T COG3028 70 AQRIKSEIARRRQLQYIGKLMRDR-----DVEPIRAALDKLRNRH----NQQVALLHKLEQLRDRLIAEGDGALTEFLNQ 140 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-----ChHHHHHHHHHHhhhH----HHHHHHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 445444446779999999998875 3333444444332211 122333344444433 3444455555
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCc
Q 017286 311 VLEREIGRLRVVYQQQQQQQPPQKPSS 337 (374)
Q Consensus 311 ~L~~Ei~RLr~l~~qqq~~~~q~~~~~ 337 (374)
.=....++||.|+-+=+-.+.+-.||.
T Consensus 141 ~P~aDrq~LR~LvRna~kE~a~NKPPk 167 (187)
T COG3028 141 YPDADRQQLRTLIRNAKKEQAQNKPPK 167 (187)
T ss_pred CCcccHHHHHHHHHHHHHHHhcCCCcH
Confidence 556889999999988665555555554
No 210
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=69.09 E-value=41 Score=34.02 Aligned_cols=67 Identities=18% Similarity=0.163 Sum_probs=35.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 259 NVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQ 325 (374)
Q Consensus 259 kVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~q 325 (374)
.+-.|+.|+..|......|++.+..|..|=..=..++.-|+.+..---...|.|..||.|+|.-+.-
T Consensus 61 e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELEr 127 (307)
T PF10481_consen 61 EYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELER 127 (307)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555544433333444444444333334677788888888765543
No 211
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=69.05 E-value=81 Score=28.11 Aligned_cols=70 Identities=24% Similarity=0.239 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017286 251 QYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQQ 326 (374)
Q Consensus 251 qYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~qq 326 (374)
+++.+|+.....|+.++..|......+......+..+-..|+...+.+..+ ....++.|+.-|=.|+-.|
T Consensus 27 ~~~~~l~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~kl~~E------~~~~~q~EldDLL~ll~Dl 96 (136)
T PF04871_consen 27 QAESSLEQENKRLEAEEKELKEAEQAAEAELEELASEVKELEAEKEKLKEE------ARKEAQSELDDLLVLLGDL 96 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhhhhhHHHHHHHHHhH
Confidence 556677777777777777776655444433333333333333222222221 1234566666666655544
No 212
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=69.04 E-value=34 Score=27.76 Aligned_cols=26 Identities=31% Similarity=0.174 Sum_probs=15.8
Q ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHH
Q 017286 278 NQQNLILSMENKALKQRLESLAQEQL 303 (374)
Q Consensus 278 ~~~~~~L~~EN~~LK~rL~aL~q~~~ 303 (374)
+.+...|..||=-||.||--|++...
T Consensus 6 e~~i~~L~KENF~LKLrI~fLee~l~ 31 (75)
T PF07989_consen 6 EEQIDKLKKENFNLKLRIYFLEERLQ 31 (75)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34445566777777777766665533
No 213
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=69.01 E-value=27 Score=29.94 Aligned_cols=34 Identities=21% Similarity=0.213 Sum_probs=13.3
Q ss_pred HhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHH
Q 017286 265 AEGTEVSAELEFLNQQNLILSMENKALKQRLESL 298 (374)
Q Consensus 265 ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL 298 (374)
..+..|..++..+.++...|..+.++++.++..|
T Consensus 80 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~l 113 (118)
T PF13815_consen 80 SQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKL 113 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444443333333333444443333333
No 214
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=68.92 E-value=54 Score=38.18 Aligned_cols=14 Identities=36% Similarity=0.294 Sum_probs=8.2
Q ss_pred CCCcccCCccCccc
Q 017286 56 SVHHQRTSSESFLM 69 (374)
Q Consensus 56 ~~hH~RtsSes~l~ 69 (374)
...|-|.++.+-||
T Consensus 52 s~k~lRa~~~~DlI 65 (1163)
T COG1196 52 SAKNLRASKMSDLI 65 (1163)
T ss_pred hhhhhhccCCccee
Confidence 35666666655444
No 215
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=68.92 E-value=9.7 Score=37.52 Aligned_cols=38 Identities=34% Similarity=0.316 Sum_probs=22.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHh----HHHHHhhHHHHHHHH
Q 017286 259 NVQSLQAEGTEVSAELEFLNQQN----LILSMENKALKQRLE 296 (374)
Q Consensus 259 kVq~LQ~E~a~Ls~~i~~L~~~~----~~L~~EN~~LK~rL~ 296 (374)
.+..|+.||..|+.++..|.++. ..|..||..||.-|.
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~ 108 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445667777777666552222 236777777776554
No 216
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=68.87 E-value=32 Score=36.83 Aligned_cols=57 Identities=25% Similarity=0.340 Sum_probs=38.3
Q ss_pred HHHHHHHHH----HHHhHHHHHhhHHHHHHHHHHHHH--------HHHHHH----------------HHHHHHHHHHHHH
Q 017286 269 EVSAELEFL----NQQNLILSMENKALKQRLESLAQE--------QLIKCL----------------EHEVLEREIGRLR 320 (374)
Q Consensus 269 ~Ls~~i~~L----~~~~~~L~~EN~~LK~rL~aL~q~--------~~lkda----------------~~E~L~~Ei~RLr 320 (374)
+|.++|..| ++++..|+-||+-|+.+|..-... ..|++| .++.++++|+.||
T Consensus 389 slaaEiSalr~erEkEr~~l~~eNk~L~~QLrDTAEAVqAagEllvrl~eaeea~~~a~~r~~~~eqe~ek~~kqiekLK 468 (488)
T PF06548_consen 389 SLAAEISALRAEREKERRFLKDENKGLQIQLRDTAEAVQAAGELLVRLREAEEAASVAQERAMDAEQENEKAKKQIEKLK 468 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555544 356778899999999988654322 223333 5678889999999
Q ss_pred HHHHH
Q 017286 321 VVYQQ 325 (374)
Q Consensus 321 ~l~~q 325 (374)
.-|.+
T Consensus 469 ~kh~~ 473 (488)
T PF06548_consen 469 RKHKM 473 (488)
T ss_pred HHHHH
Confidence 87655
No 217
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=68.86 E-value=20 Score=30.32 Aligned_cols=51 Identities=25% Similarity=0.375 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHH
Q 017286 251 QYIAELERNVQSLQA-EGTEVSAELEFLNQQNLILSMENKALKQRLESLAQE 301 (374)
Q Consensus 251 qYI~ELErkVq~LQ~-E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~ 301 (374)
+|-+.=|.||..|.. =.+....+|..|+.+...|.-||-.|+.+|.....+
T Consensus 27 ~YssKHE~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~E 78 (87)
T PF12709_consen 27 LYSSKHETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREE 78 (87)
T ss_pred HHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555541 112244455555555555555555565555555443
No 218
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=68.69 E-value=35 Score=36.71 Aligned_cols=71 Identities=21% Similarity=0.378 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhh----------HHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHH-----HHHHHH--HHHHHHHHHHH
Q 017286 255 ELERNVQSLQAEG----------TEVSAELEFLNQQNLILSMENKALKQRLESLAQ-----EQLIKC--LEHEVLEREIG 317 (374)
Q Consensus 255 ELErkVq~LQ~E~----------a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q-----~~~lkd--a~~E~L~~Ei~ 317 (374)
-||++|+.||..+ ..|...|..|-.++-.+..|.+.+...|++|.. +++|.+ ...|.|.-|+.
T Consensus 342 yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelk 421 (527)
T PF15066_consen 342 YLEKKVKELQMKITKQQVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELK 421 (527)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4899999999854 568888888888888888899999888887753 345544 45778888888
Q ss_pred HHHHHHHH
Q 017286 318 RLRVVYQQ 325 (374)
Q Consensus 318 RLr~l~~q 325 (374)
.+++-|.-
T Consensus 422 K~k~nyv~ 429 (527)
T PF15066_consen 422 KIKANYVH 429 (527)
T ss_pred HHhhhHHH
Confidence 88887765
No 219
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=68.66 E-value=94 Score=29.33 Aligned_cols=88 Identities=25% Similarity=0.275 Sum_probs=63.4
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhH--HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 240 QFAQRSRVRK-LQYIAELERNVQSLQAEGTEVSAELEFLNQQNL--ILSMENKALKQRLESLAQEQLIKCLEHEVLEREI 316 (374)
Q Consensus 240 qSAqRSR~RK-lqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~--~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei 316 (374)
.-.-|.++|| ..-+.++|+++...+.|+-.+..++.-|.+-.. .| .|=.+|..+|..++....-.+--...|.+.+
T Consensus 70 vr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL-~eReeL~~kL~~~~~~l~~~~~ki~~Lek~l 148 (194)
T PF15619_consen 70 VRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNL-AEREELQRKLSQLEQKLQEKEKKIQELEKQL 148 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777887 455778999999999999888888888766433 22 3346778888888888777777777777777
Q ss_pred HHHHHHHHHhhh
Q 017286 317 GRLRVVYQQQQQ 328 (374)
Q Consensus 317 ~RLr~l~~qqq~ 328 (374)
+=.-..|..|..
T Consensus 149 eL~~k~~~rql~ 160 (194)
T PF15619_consen 149 ELENKSFRRQLA 160 (194)
T ss_pred HHHhhHHHHHHH
Confidence 666555555543
No 220
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=68.60 E-value=42 Score=30.47 Aligned_cols=55 Identities=31% Similarity=0.386 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHH
Q 017286 239 QQFAQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQ 300 (374)
Q Consensus 239 RqSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q 300 (374)
|-+|+-=|.+.++--.|||..-..|++|+..|..+++. |..|=.+||.+.++|..
T Consensus 62 RGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~-------~~~E~da~k~k~e~l~~ 116 (135)
T KOG4196|consen 62 RGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSR-------LRRELDAYKSKYEALQN 116 (135)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHh
Confidence 58999999999998888887766666555555544444 35555566666666554
No 221
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=68.58 E-value=17 Score=37.57 Aligned_cols=29 Identities=38% Similarity=0.338 Sum_probs=16.1
Q ss_pred HHHHHHHHhHHHHHhhHHHHHHHHHHHHH
Q 017286 273 ELEFLNQQNLILSMENKALKQRLESLAQE 301 (374)
Q Consensus 273 ~i~~L~~~~~~L~~EN~~LK~rL~aL~q~ 301 (374)
|..-|++++..|..||++||.+++.|+.+
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eVerLE~e 61 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEVERLENE 61 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33445555556666666666666655444
No 222
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=68.48 E-value=62 Score=35.36 Aligned_cols=71 Identities=17% Similarity=0.245 Sum_probs=48.9
Q ss_pred HHHHHHHHH---HHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 017286 254 AELERNVQS---LQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQ-LIKCLEHEVLEREIGRLRVVYQ 324 (374)
Q Consensus 254 ~ELErkVq~---LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~-~lkda~~E~L~~Ei~RLr~l~~ 324 (374)
.+|+.|++. ++.|++.|-++|..++++-.++.+||.+|+.-|+++.+-. ++.+-+.|.=.++.+-|.-+..
T Consensus 219 eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~E 293 (596)
T KOG4360|consen 219 EELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHE 293 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666554 5779999999999999999999999999999999887543 3333333333344443443333
No 223
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=68.31 E-value=87 Score=31.62 Aligned_cols=47 Identities=28% Similarity=0.352 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLA 299 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~ 299 (374)
+..|++.+..|+.+...|...++.++.-...|......|+.++..|.
T Consensus 146 k~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~ 192 (312)
T smart00787 146 KEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLK 192 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555444444444444444444433
No 224
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=68.27 E-value=48 Score=41.15 Aligned_cols=75 Identities=25% Similarity=0.272 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHH-------HHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 251 QYIAELERNVQSLQAEGTEVSAEL-------EFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVY 323 (374)
Q Consensus 251 qYI~ELErkVq~LQ~E~a~Ls~~i-------~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~ 323 (374)
..+..|.+.|..|++.+..|...+ +.+.+++..|..|=.+|+.+|+...+....+.-++.....||++||..+
T Consensus 1090 ~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~l 1169 (1930)
T KOG0161|consen 1090 AEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDL 1169 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444 4444455555555555555555554444444445667778888888766
Q ss_pred HH
Q 017286 324 QQ 325 (374)
Q Consensus 324 ~q 325 (374)
..
T Consensus 1170 ee 1171 (1930)
T KOG0161|consen 1170 EE 1171 (1930)
T ss_pred HH
Confidence 54
No 225
>PRK05255 hypothetical protein; Provisional
Probab=68.17 E-value=45 Score=31.15 Aligned_cols=91 Identities=21% Similarity=0.334 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHH------HHHHHHHHHHH
Q 017286 238 KQQFAQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQ------EQLIKCLEHEV 311 (374)
Q Consensus 238 KRqSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q------~~~lkda~~E~ 311 (374)
+|-...-.|-|.+|||.-|=|.+ ....+...|..+...+..-+.. -.+|+.+.. +..|.+.+.+.
T Consensus 61 ~ri~~~eA~RRqlqyIGKLmR~~-----d~e~I~~al~~~~~~~~~~~~~----~h~lE~wRdrLi~~~d~al~e~~~~~ 131 (171)
T PRK05255 61 QRITSHEARRRQLQYIGKLMRNE-----DVEPIRAALDKLKNKHNQETAR----FHKLERWRDRLLAEGDDALTEFLEEY 131 (171)
T ss_pred hhhccchHHHHHHHHHHHHHhhC-----CHHHHHHHHHHHhchhHHHHHH----HHHHHHHHHHHHhCCHHHHHHHHHHC
Confidence 34444557789999999998886 3445666666655443333222 222332222 33333444444
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCc
Q 017286 312 LEREIGRLRVVYQQQQQQQPPQKPSS 337 (374)
Q Consensus 312 L~~Ei~RLr~l~~qqq~~~~q~~~~~ 337 (374)
=..++|.||+|.-+=+-...+..+|.
T Consensus 132 P~~DrQ~LRqLiR~A~kE~~~~kppk 157 (171)
T PRK05255 132 PDADRQQLRQLIRNAKKEKAQNKPPK 157 (171)
T ss_pred chhhHHHHHHHHHHHHHHHHcCCCch
Confidence 46789999999888444333334444
No 226
>PRK04406 hypothetical protein; Provisional
Probab=68.11 E-value=35 Score=27.70 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEF 276 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~ 276 (374)
|.+||.++..|+..++-+-..|..
T Consensus 6 ~~~le~Ri~~LE~~lAfQE~tIe~ 29 (75)
T PRK04406 6 IEQLEERINDLECQLAFQEQTIEE 29 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555444444333333
No 227
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=68.03 E-value=15 Score=38.98 Aligned_cols=40 Identities=30% Similarity=0.338 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHH
Q 017286 254 AELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQ 293 (374)
Q Consensus 254 ~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~ 293 (374)
++|-.+|..|+.++..|..++..+.-.+..|+.||.-|++
T Consensus 46 e~l~~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~~ 85 (552)
T KOG2129|consen 46 ESLGARVSSLSQRNKVLKGELETLKGKCKIMQEENRPLLL 85 (552)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhhh
Confidence 4677889999999999999999999999999999998864
No 228
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.95 E-value=40 Score=34.94 Aligned_cols=50 Identities=24% Similarity=0.171 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHH
Q 017286 247 VRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLE 296 (374)
Q Consensus 247 ~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~ 296 (374)
.|-+..+++|-|+-+.|..-...|.+.++.|+++...|.+.=..|+.+.+
T Consensus 228 e~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~ 277 (365)
T KOG2391|consen 228 ERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVR 277 (365)
T ss_pred HHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34455566666666666666666666666666666666444444444443
No 229
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=67.63 E-value=84 Score=35.44 Aligned_cols=84 Identities=17% Similarity=0.221 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 246 RVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQ 325 (374)
Q Consensus 246 R~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~q 325 (374)
|++-...+-.|..+--.+...++.|..+|+.|+++...-..|+..|..-|+.-+-+.-+-.+..+.|..|+.|=...++.
T Consensus 312 REKVFaLmVQLkaQeleh~~~~~qL~~qVAsLQeev~sq~qEqaiLq~SLqDK~AElevERv~sktLQ~ELsrAqea~~~ 391 (739)
T PF07111_consen 312 REKVFALMVQLKAQELEHRDSVKQLRGQVASLQEEVASQQQEQAILQHSLQDKAAELEVERVGSKTLQAELSRAQEARRR 391 (739)
T ss_pred HHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33334444444444444455667778888888887777788888877777777777777777788888888887777777
Q ss_pred hhhc
Q 017286 326 QQQQ 329 (374)
Q Consensus 326 qq~~ 329 (374)
+|++
T Consensus 392 lqqq 395 (739)
T PF07111_consen 392 LQQQ 395 (739)
T ss_pred HHHH
Confidence 5553
No 230
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=67.32 E-value=23 Score=31.37 Aligned_cols=12 Identities=58% Similarity=0.656 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHH
Q 017286 248 RKLQYIAELERN 259 (374)
Q Consensus 248 RKlqYI~ELErk 259 (374)
++.+||.+|+..
T Consensus 78 ~~~~~i~~~~~~ 89 (139)
T PF13935_consen 78 RAQQRIAELEQE 89 (139)
T ss_pred HHHHHHHHHHHH
Confidence 355566666554
No 231
>PRK02224 chromosome segregation protein; Provisional
Probab=67.23 E-value=96 Score=34.44 Aligned_cols=16 Identities=19% Similarity=0.318 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHhhHH
Q 017286 254 AELERNVQSLQAEGTE 269 (374)
Q Consensus 254 ~ELErkVq~LQ~E~a~ 269 (374)
.+.+.++..|+.++.+
T Consensus 533 e~~~~~~~~l~~e~~~ 548 (880)
T PRK02224 533 EEKRERAEELRERAAE 548 (880)
T ss_pred HhHHHHHHHHHHHHHH
Confidence 3333333333333333
No 232
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=67.18 E-value=54 Score=29.23 Aligned_cols=57 Identities=16% Similarity=0.060 Sum_probs=33.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 258 RNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLER 314 (374)
Q Consensus 258 rkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~ 314 (374)
.....|+...+.....|..|+.+...+......-...|+.|++.+.......+...+
T Consensus 27 ~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~ 83 (160)
T PF13094_consen 27 DRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEK 83 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444445555555666666666666666777778888777665554443333
No 233
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=67.12 E-value=59 Score=29.36 Aligned_cols=63 Identities=16% Similarity=0.074 Sum_probs=45.2
Q ss_pred HHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017286 264 QAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQQ 326 (374)
Q Consensus 264 Q~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~qq 326 (374)
.-++..|+..+...++....+..++..++-.|..|.++..-.+..+..|..+......+..+-
T Consensus 18 ~~~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~r 80 (135)
T TIGR03495 18 SQRLRNARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQR 80 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777777777788888888887777777777777777777776666553
No 234
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=67.00 E-value=92 Score=28.66 Aligned_cols=67 Identities=21% Similarity=0.260 Sum_probs=38.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHH-HHHHHHHHH---HHHHHHHHHHHHHHHHHh
Q 017286 260 VQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLA-QEQLIKCLE---HEVLEREIGRLRVVYQQQ 326 (374)
Q Consensus 260 Vq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~-q~~~lkda~---~E~L~~Ei~RLr~l~~qq 326 (374)
=+.+..|...|..+|..|+.++..|....+.+..++..|+ ++..++-.+ ++.-..-+..|+.+...|
T Consensus 84 Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~e~l~~~~e~ver~ 154 (158)
T PF09744_consen 84 EDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHERERELLRKLKEHVERQ 154 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888888888887777666655555555554444 345544333 333334444444444433
No 235
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=66.85 E-value=1.4e+02 Score=34.90 Aligned_cols=22 Identities=32% Similarity=0.450 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHH
Q 017286 251 QYIAELERNVQSLQAEGTEVSA 272 (374)
Q Consensus 251 qYI~ELErkVq~LQ~E~a~Ls~ 272 (374)
+.|.+|+.++..|+.+...|..
T Consensus 828 ~ei~~l~~~~~~~~~~~~~l~~ 849 (1163)
T COG1196 828 QEIEELEEEIEELEEKLDELEE 849 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444433333333333
No 236
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=66.70 E-value=7.6 Score=34.42 Aligned_cols=28 Identities=25% Similarity=0.268 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 017286 251 QYIAELERNVQSLQAEGTEVSAELEFLN 278 (374)
Q Consensus 251 qYI~ELErkVq~LQ~E~a~Ls~~i~~L~ 278 (374)
.=++||+.+++-||.||..|+.+|..-.
T Consensus 3 ~t~EeLaaeL~kLqmENk~LKkkl~~~~ 30 (118)
T PF05812_consen 3 MTMEELAAELQKLQMENKALKKKLRQSV 30 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 3467777777777777777777766543
No 237
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=66.66 E-value=73 Score=32.93 Aligned_cols=20 Identities=25% Similarity=0.225 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 017286 306 CLEHEVLEREIGRLRVVYQQ 325 (374)
Q Consensus 306 da~~E~L~~Ei~RLr~l~~q 325 (374)
+.....|++|++-.+.+|..
T Consensus 354 ~~el~~L~Re~~~~~~~Y~~ 373 (498)
T TIGR03007 354 EAELTQLNRDYEVNKSNYEQ 373 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777777755
No 238
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=66.58 E-value=25 Score=28.65 Aligned_cols=43 Identities=21% Similarity=0.258 Sum_probs=26.3
Q ss_pred HHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHH
Q 017286 264 QAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKC 306 (374)
Q Consensus 264 Q~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkd 306 (374)
..+...+..++..++++...|..||..|+..++.+..-..+..
T Consensus 34 ~~~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~~~rIe~ 76 (97)
T PF04999_consen 34 RHQSRQLFYELQQLEKEIDQLQEENERLRLEIATLSSPSRIER 76 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 3345555566666666666677777777766666665544433
No 239
>PF14645 Chibby: Chibby family
Probab=66.48 E-value=17 Score=31.76 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=10.1
Q ss_pred HHHHHHHHhhHHHHHHHHHH
Q 017286 258 RNVQSLQAEGTEVSAELEFL 277 (374)
Q Consensus 258 rkVq~LQ~E~a~Ls~~i~~L 277 (374)
++.+.|+.||.-|.-++..|
T Consensus 78 ~~n~~L~EENN~Lklk~elL 97 (116)
T PF14645_consen 78 KENQQLEEENNLLKLKIELL 97 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555554
No 240
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=66.37 E-value=1.4e+02 Score=33.56 Aligned_cols=40 Identities=18% Similarity=0.283 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHH
Q 017286 245 SRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLIL 284 (374)
Q Consensus 245 SR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L 284 (374)
-+.+.++-+.+|+.+.+.|+.....|..++..+......|
T Consensus 573 ~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L 612 (717)
T PF10168_consen 573 QKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKL 612 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666677777777666666666666654443333
No 241
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=66.28 E-value=27 Score=39.37 Aligned_cols=21 Identities=33% Similarity=0.330 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q 017286 309 HEVLEREIGRLRVVYQQQQQQ 329 (374)
Q Consensus 309 ~E~L~~Ei~RLr~l~~qqq~~ 329 (374)
.-.|..||+++|....||.|+
T Consensus 748 ~~~le~e~r~~k~~~~q~lq~ 768 (961)
T KOG4673|consen 748 ANQLEVEIRELKRKHKQELQE 768 (961)
T ss_pred HHHHHHHHHHHHHHHHHHhhH
Confidence 445677888888888877664
No 242
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=66.13 E-value=52 Score=31.36 Aligned_cols=50 Identities=26% Similarity=0.279 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHH
Q 017286 252 YIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQE 301 (374)
Q Consensus 252 YI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~ 301 (374)
-+..||.||.-|+.-...+...+..-++++-.|..+=..||++|.+|+..
T Consensus 80 lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K 129 (189)
T TIGR02132 80 LVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKK 129 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHH
Confidence 46788999998888888877777766677888888888999999998876
No 243
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=66.02 E-value=18 Score=38.50 Aligned_cols=46 Identities=26% Similarity=0.301 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017286 269 EVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQQQQ 328 (374)
Q Consensus 269 ~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~qqq~ 328 (374)
.|...+.+|+.++.+|+..|++|++||.. +..+|.+||++|.+||-
T Consensus 410 el~e~le~Lq~Q~eeL~e~~n~l~qrI~e--------------er~~v~~lkql~~~~q~ 455 (514)
T KOG4370|consen 410 ELQEILELLQRQNEELEEKVNHLNQRIAE--------------ERERVIELKQLVNLLQE 455 (514)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhh
Confidence 46677888899999999999999998865 35678899999998765
No 244
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=66.00 E-value=42 Score=36.97 Aligned_cols=25 Identities=24% Similarity=0.159 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 300 QEQLIKCLEHEVLEREIGRLRVVYQ 324 (374)
Q Consensus 300 q~~~lkda~~E~L~~Ei~RLr~l~~ 324 (374)
....++...-++|++|+++|+..+.
T Consensus 559 ~~~~~k~~~l~~L~~En~~L~~~l~ 583 (722)
T PF05557_consen 559 KAEQIKKSTLEALQAENEDLLARLR 583 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667788999999999998773
No 245
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=65.99 E-value=1.4e+02 Score=29.41 Aligned_cols=17 Identities=24% Similarity=0.323 Sum_probs=6.3
Q ss_pred HHHHHHHHHHhhHHHHH
Q 017286 256 LERNVQSLQAEGTEVSA 272 (374)
Q Consensus 256 LErkVq~LQ~E~a~Ls~ 272 (374)
|+.++..++.+...+..
T Consensus 149 l~~~i~~~~~~i~~~~~ 165 (423)
T TIGR01843 149 ILAQIKQLEAELAGLQA 165 (423)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 246
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=65.94 E-value=45 Score=28.19 Aligned_cols=47 Identities=26% Similarity=0.266 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHH
Q 017286 245 SRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKAL 291 (374)
Q Consensus 245 SR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~L 291 (374)
=..=|.-|=.-.|.+|..|+.++..|..++..|..+....+.|-..|
T Consensus 36 V~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~L 82 (87)
T PF12709_consen 36 VKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQEL 82 (87)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457778888999999999999999999999988766666665544
No 247
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.92 E-value=58 Score=32.52 Aligned_cols=14 Identities=21% Similarity=0.368 Sum_probs=6.3
Q ss_pred HhhHHHHHHHHHHH
Q 017286 286 MENKALKQRLESLA 299 (374)
Q Consensus 286 ~EN~~LK~rL~aL~ 299 (374)
..|..|+.|+-+|.
T Consensus 98 ~r~~~l~~raRAmq 111 (265)
T COG3883 98 ERQELLKKRARAMQ 111 (265)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 248
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=65.88 E-value=11 Score=33.29 Aligned_cols=30 Identities=27% Similarity=0.309 Sum_probs=22.0
Q ss_pred HHhhHHHHHHHHHHHHHhHHHHHhhHHHHH
Q 017286 264 QAEGTEVSAELEFLNQQNLILSMENKALKQ 293 (374)
Q Consensus 264 Q~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~ 293 (374)
..|+..|+.+|..|.+.+..|..||.-||.
T Consensus 66 REEVe~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 66 REEVEVLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666777777777777778888887774
No 249
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=65.86 E-value=49 Score=38.09 Aligned_cols=55 Identities=18% Similarity=0.270 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHH
Q 017286 250 LQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLI 304 (374)
Q Consensus 250 lqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~l 304 (374)
++..--+-+-|..|+.....+..+|..||..+..|.+|..+|..-+++++.++.-
T Consensus 84 tqetriyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke 138 (1265)
T KOG0976|consen 84 TQETRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKE 138 (1265)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555666666666666666666666666666665554433
No 250
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=65.69 E-value=17 Score=27.11 Aligned_cols=28 Identities=32% Similarity=0.347 Sum_probs=15.5
Q ss_pred HHHHHHHHhHHHHHhhHHHHHHHHHHHH
Q 017286 273 ELEFLNQQNLILSMENKALKQRLESLAQ 300 (374)
Q Consensus 273 ~i~~L~~~~~~L~~EN~~LK~rL~aL~q 300 (374)
.+..|......|..||..|+.+|+.|++
T Consensus 26 ~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 26 REEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444455555556666666666665554
No 251
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=65.65 E-value=40 Score=33.78 Aligned_cols=68 Identities=28% Similarity=0.369 Sum_probs=50.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhh
Q 017286 261 QSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVL----EREIGRLRVVYQQQQQ 328 (374)
Q Consensus 261 q~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L----~~Ei~RLr~l~~qqq~ 328 (374)
..++..+..+...|..-...+..|..||..|+.+|..|..+.-+++.+.+.+ .-|++-+..-+.++..
T Consensus 110 ~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~k~keLE~Ql~~AKl~q~~~ 181 (309)
T PF09728_consen 110 EKFQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYELREEHFEKLLKQKELEVQLAEAKLEQQQE 181 (309)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3445566677777777777888999999999999999999998888765554 4466655555555443
No 252
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=65.64 E-value=52 Score=31.74 Aligned_cols=26 Identities=35% Similarity=0.367 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Q 017286 254 AELERNVQSLQAEGTEVSAELEFLNQ 279 (374)
Q Consensus 254 ~ELErkVq~LQ~E~a~Ls~~i~~L~~ 279 (374)
..||..+..++.+...+..++...+.
T Consensus 97 ~~~~~~~~~~~~~i~~~~~~~~~a~~ 122 (334)
T TIGR00998 97 KQLEITVQQLQAKVESLKIKLEQARE 122 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555554433
No 253
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=65.57 E-value=26 Score=37.37 Aligned_cols=62 Identities=24% Similarity=0.224 Sum_probs=35.1
Q ss_pred HhhHHHHHHHHHHHHHh--HHHHHhh------------HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Q 017286 265 AEGTEVSAELEFLNQQN--LILSMEN------------KALKQRLESLAQEQ-----LIKCLEHEVLEREIGRLRVVYQQ 325 (374)
Q Consensus 265 ~E~a~Ls~~i~~L~~~~--~~L~~EN------------~~LK~rL~aL~q~~-----~lkda~~E~L~~Ei~RLr~l~~q 325 (374)
+|+..|-.+...|+++. ..|.+|- -.++.|.++|+.+. +.-+-.+.+|+.+|-|||.+..-
T Consensus 250 qEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~eReasle~Enlqmr~qqleeentelRs~~arlksl~dk 329 (502)
T KOG0982|consen 250 QENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKEREASLEKENLQMRDQQLEEENTELRSLIARLKSLADK 329 (502)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666666666665442 1222222 12355666666552 33345677888888888887766
Q ss_pred h
Q 017286 326 Q 326 (374)
Q Consensus 326 q 326 (374)
+
T Consensus 330 l 330 (502)
T KOG0982|consen 330 L 330 (502)
T ss_pred H
Confidence 4
No 254
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=65.54 E-value=62 Score=35.15 Aligned_cols=46 Identities=30% Similarity=0.239 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHH
Q 017286 252 YIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLES 297 (374)
Q Consensus 252 YI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~a 297 (374)
.|.+|+.++..++.+...+..++..++++...+..+-..++.++..
T Consensus 422 ~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 467 (650)
T TIGR03185 422 QIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDE 467 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555555555554444444444444433
No 255
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=65.50 E-value=90 Score=36.14 Aligned_cols=63 Identities=27% Similarity=0.278 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017286 266 EGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQQQQ 328 (374)
Q Consensus 266 E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~qqq~ 328 (374)
++..|..+|+.++++...+...-..+...++.|+++..+....-+.|+.++..+.+-+.+|..
T Consensus 467 ~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~ 529 (980)
T KOG0980|consen 467 ENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLA 529 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 333333444444443333333333344445555555555555555566666666655555544
No 256
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=65.43 E-value=84 Score=34.67 Aligned_cols=18 Identities=28% Similarity=0.451 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHhhH
Q 017286 251 QYIAELERNVQSLQAEGT 268 (374)
Q Consensus 251 qYI~ELErkVq~LQ~E~a 268 (374)
..|.+||+.+..|++..+
T Consensus 50 ~~V~eLE~sL~eLk~q~~ 67 (617)
T PF15070_consen 50 SRVQELERSLSELKNQMA 67 (617)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 457778887777765443
No 257
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=65.35 E-value=1.3e+02 Score=29.20 Aligned_cols=73 Identities=16% Similarity=0.064 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhhc-CCCCCCCcc
Q 017286 267 GTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCL-------EHEVLEREIGRLRVVYQQQQQQ-QPPQKPSSS 338 (374)
Q Consensus 267 ~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda-------~~E~L~~Ei~RLr~l~~qqq~~-~~q~~~~~~ 338 (374)
+.++..++..|.+++.....|=..+.+.|..|+..-.-... ....|..|+.+||.-+...... -.....+..
T Consensus 34 L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~lgl~~Lp~l 113 (230)
T PF10146_consen 34 LEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKEYLGLEPLPSL 113 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcc
Confidence 34445555566666666555555556666555533111111 1233445666666666665554 444445554
Q ss_pred c
Q 017286 339 H 339 (374)
Q Consensus 339 ~ 339 (374)
|
T Consensus 114 ~ 114 (230)
T PF10146_consen 114 E 114 (230)
T ss_pred c
Confidence 4
No 258
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=65.19 E-value=21 Score=27.46 Aligned_cols=30 Identities=37% Similarity=0.512 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 017286 248 RKLQYIAELERNVQSLQAEGTEVSAELEFL 277 (374)
Q Consensus 248 RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L 277 (374)
.+.+.|.+|+.++..|+.|+..|..+|..|
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344456666666666666666666666665
No 259
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=65.19 E-value=7.5 Score=44.03 Aligned_cols=75 Identities=23% Similarity=0.148 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHH-----HHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 251 QYIAELERNVQSLQAEGTEVSA-----ELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQ 325 (374)
Q Consensus 251 qYI~ELErkVq~LQ~E~a~Ls~-----~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~q 325 (374)
+||.|+|-.+..||.|+.+++. ++..|+..+..+...|..|-.+++...-.-+.-++--+-|..+=.+||.+.++
T Consensus 829 kql~eykvey~vLq~El~~~~~~~~~~~~~~lE~~~s~~~~q~~~ll~qlq~~~~~iq~l~~~v~~l~~~e~~~k~~l~~ 908 (948)
T KOG4436|consen 829 KQLAEYKVEYHVLQEELTTSSHLEDLNRIAKLETTNSSLQAQNTDLLEQLQVAELTIQTLERYVEQLLEHENKLKRALQT 908 (948)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhcccccccccchhhhHhhhhhhhhhhccccchhhHHHHHhhhhhcchHHHHHHHhc
Confidence 7899999999999999998888 34444444555555555555555444444444444444444443466665544
No 260
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=65.19 E-value=47 Score=37.77 Aligned_cols=29 Identities=28% Similarity=0.322 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 017286 241 FAQRSRVRKLQYIAELERNVQSLQAEGTE 269 (374)
Q Consensus 241 SAqRSR~RKlqYI~ELErkVq~LQ~E~a~ 269 (374)
+=||.=++-.+-.+|||||+.-|+.|+..
T Consensus 46 afQR~fv~evrRcdemeRklrfl~~ei~k 74 (829)
T KOG2189|consen 46 AFQRKFVNEVRRCDEMERKLRFLESEIKK 74 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566667777888888888888887665
No 261
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=65.09 E-value=80 Score=35.00 Aligned_cols=89 Identities=16% Similarity=0.120 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHH-----------HHHHHHHHHHHHHH
Q 017286 242 AQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLE-----------SLAQEQLIKCLEHE 310 (374)
Q Consensus 242 AqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~-----------aL~q~~~lkda~~E 310 (374)
-++-+...+|.|.++|.+...+..-..-|..++.........|+.-=+.|.++-. .+.++.++--.+..
T Consensus 593 l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~l~~AErdFk~Elq~~~~~~~ 672 (741)
T KOG4460|consen 593 LCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPVLSDAERDFKKELQLIPDQLR 672 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHhHHHHH
Confidence 4566777788889999888888888888888887776666666655555544321 23455566666778
Q ss_pred HHHHHHHHHHHHHHHhhhcC
Q 017286 311 VLEREIGRLRVVYQQQQQQQ 330 (374)
Q Consensus 311 ~L~~Ei~RLr~l~~qqq~~~ 330 (374)
+|..-|+-+|.-+.-|+++.
T Consensus 673 ~L~~~iET~~~~~~KQ~~H~ 692 (741)
T KOG4460|consen 673 HLGNAIETVTMKKDKQQQHM 692 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888887754
No 262
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=65.07 E-value=78 Score=26.08 Aligned_cols=65 Identities=20% Similarity=0.224 Sum_probs=39.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 258 RNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQ 325 (374)
Q Consensus 258 rkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~q 325 (374)
..+..|..|...++.+=..++.+...=..|...++..|-.|++... .+-+..+.||.|||.-..+
T Consensus 11 ~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~---kmK~~YEeEI~rLr~eLe~ 75 (79)
T PF08581_consen 11 QEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHR---KMKQQYEEEIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh
Confidence 3344444444444445555555555555677777777777776522 2344568999999985544
No 263
>PHA03162 hypothetical protein; Provisional
Probab=64.91 E-value=7.2 Score=35.28 Aligned_cols=28 Identities=14% Similarity=0.249 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 017286 249 KLQYIAELERNVQSLQAEGTEVSAELEF 276 (374)
Q Consensus 249 KlqYI~ELErkVq~LQ~E~a~Ls~~i~~ 276 (374)
|..-++||+.+++.||.||..|+.+|..
T Consensus 11 ~~~tmEeLaaeL~kLqmENK~LKkkl~~ 38 (135)
T PHA03162 11 AQPTMEDLAAEIAKLQLENKALKKKIKE 38 (135)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445788888888888888888888843
No 264
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=64.82 E-value=52 Score=34.11 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Q 017286 254 AELERNVQSLQAEGTEVSAELEFLNQ 279 (374)
Q Consensus 254 ~ELErkVq~LQ~E~a~Ls~~i~~L~~ 279 (374)
.+|+..++.|+.+...|...|..+..
T Consensus 337 ~~l~~~~~~~~~~l~~l~~~l~~l~~ 362 (451)
T PF03961_consen 337 EELEEELEELKEELEKLKKNLKKLKK 362 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 45566666666666666666666654
No 265
>PRK10698 phage shock protein PspA; Provisional
Probab=64.41 E-value=84 Score=29.99 Aligned_cols=60 Identities=17% Similarity=0.125 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 017286 249 KLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLE 308 (374)
Q Consensus 249 KlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~ 308 (374)
-..-+..|+..+...+..+..|...+..|+.....+...-..|+.|...-.-+..+.+++
T Consensus 97 ~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~ 156 (222)
T PRK10698 97 LTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQL 156 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344467788888888899999999999999999999999999999999999888888764
No 266
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=64.25 E-value=63 Score=32.77 Aligned_cols=56 Identities=23% Similarity=0.294 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 255 ELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQ 324 (374)
Q Consensus 255 ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~ 324 (374)
.||+..+.|..+...=-.+|.+| .......|.+|+.|+| ....++.|++|.+....
T Consensus 78 ~lek~rqKlshdlq~Ke~qv~~l-------EgQl~s~Kkqie~Leq-------elkr~KsELErsQ~~~~ 133 (307)
T PF10481_consen 78 NLEKTRQKLSHDLQVKESQVNFL-------EGQLNSCKKQIEKLEQ-------ELKRCKSELERSQQAAS 133 (307)
T ss_pred HHHHHHHHhhHHHhhhHHHHHHH-------HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhc
Confidence 34444444444433333333333 3344445555555555 23445555555555443
No 267
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=64.13 E-value=21 Score=34.23 Aligned_cols=28 Identities=29% Similarity=0.367 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHHHHHhHHHHHhhHHHHH
Q 017286 266 EGTEVSAELEFLNQQNLILSMENKALKQ 293 (374)
Q Consensus 266 E~a~Ls~~i~~L~~~~~~L~~EN~~LK~ 293 (374)
||..|..+|..++.+...|..||.+|+.
T Consensus 126 ENe~Lh~~ie~~~eEi~~lk~en~~L~e 153 (200)
T PF07412_consen 126 ENEKLHKEIEQKDEEIAKLKEENEELKE 153 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777777777777765
No 268
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=64.05 E-value=92 Score=34.11 Aligned_cols=57 Identities=14% Similarity=0.144 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHH
Q 017286 245 SRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQE 301 (374)
Q Consensus 245 SR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~ 301 (374)
.-+.+.+-...++.+...+.+.+..+..+|.....+...+..||..|.-.|..+..+
T Consensus 192 ~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk 248 (596)
T KOG4360|consen 192 YEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKK 248 (596)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 345666666677766666666666666666666666666666666666555555444
No 269
>PHA03155 hypothetical protein; Provisional
Probab=63.98 E-value=7.8 Score=34.22 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEF 276 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~ 276 (374)
++||+.+++-|+.||..|+.+|..
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 577888888877777777777754
No 270
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=63.92 E-value=61 Score=34.74 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 017286 308 EHEVLEREIGRLRVVYQQ 325 (374)
Q Consensus 308 ~~E~L~~Ei~RLr~l~~q 325 (374)
+..-|+.||+|||.-.-.
T Consensus 254 hi~~l~~EveRlrt~l~~ 271 (552)
T KOG2129|consen 254 HIDKLQAEVERLRTYLSR 271 (552)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567789999999975543
No 271
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=63.75 E-value=1e+02 Score=32.66 Aligned_cols=77 Identities=29% Similarity=0.244 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Q 017286 249 KLQYIAELERNVQSLQAEGT---EVSAELEFLNQQNLILSMENKALKQRLESLAQEQL------IKCLEHEVLEREIGRL 319 (374)
Q Consensus 249 KlqYI~ELErkVq~LQ~E~a---~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~------lkda~~E~L~~Ei~RL 319 (374)
|-+|.-|+---.++||.|-- -|..+|.-|.+ .-.+|=.-||+.|+.|+...- .+| ++|+|+.=--|+
T Consensus 287 ke~~krdy~fi~etLQEERyR~erLEEqLNdlte---LqQnEi~nLKqElasmeervaYQsyERaRd-IqEalEscqtri 362 (455)
T KOG3850|consen 287 KEQIKRDYKFIAETLQEERYRYERLEEQLNDLTE---LQQNEIANLKQELASMEERVAYQSYERARD-IQEALESCQTRI 362 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 44455555555566666542 23333322211 112344446666666654432 222 355555544555
Q ss_pred HHHHHHhhhc
Q 017286 320 RVVYQQQQQQ 329 (374)
Q Consensus 320 r~l~~qqq~~ 329 (374)
-.+-.+||||
T Consensus 363 sKlEl~qq~q 372 (455)
T KOG3850|consen 363 SKLELQQQQQ 372 (455)
T ss_pred HHHHHHHHHH
Confidence 5554444443
No 272
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=63.70 E-value=86 Score=26.13 Aligned_cols=54 Identities=20% Similarity=0.187 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHH
Q 017286 243 QRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLE 296 (374)
Q Consensus 243 qRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~ 296 (374)
...=..|..-+..||.++.-|.+|.+.-..+.-.+.+....|.+||+.|+..+.
T Consensus 16 ~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~ 69 (96)
T PF08647_consen 16 SEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLS 69 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 334445667778889999999999888888888888888899999988887664
No 273
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=63.64 E-value=1.4e+02 Score=28.45 Aligned_cols=53 Identities=26% Similarity=0.287 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 017286 271 SAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCL---EHEVLEREIGRLRVVY 323 (374)
Q Consensus 271 s~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda---~~E~L~~Ei~RLr~l~ 323 (374)
..++.-|+.+......+...|+..|++|..-..+|+. ..+.|++|+.+.+.-+
T Consensus 46 ~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI~~Le~e~~~~~~e~ 101 (206)
T PF14988_consen 46 AKQTSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQEREIQTLEEELEKMRAEH 101 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555566666677777776665555543 3445555555544433
No 274
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.37 E-value=1e+02 Score=32.24 Aligned_cols=77 Identities=17% Similarity=0.158 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHH--HHHhHHHHHhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 017286 249 KLQYIAELERNVQSLQAEGTEVSAELEFL--NQQNLILSMENKALKQRLESLAQEQLIKC----LEHEVLEREIGRLRVV 322 (374)
Q Consensus 249 KlqYI~ELErkVq~LQ~E~a~Ls~~i~~L--~~~~~~L~~EN~~LK~rL~aL~q~~~lkd----a~~E~L~~Ei~RLr~l 322 (374)
.++-+.+++..+..+..-...+......+ .........|...+..++..+.++..++. .+.+.++.|++|+..-
T Consensus 385 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~k~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~f~~~ 464 (503)
T KOG2273|consen 385 ALQKLQEAQRELSSKKEQLSKLKKKNRSSFGFDKIDLAEKEIEKLEEKVNELEELLALKELELDEISERIRAELERFEES 464 (503)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555544444444444332 22235666777778888888886655544 4688999999998884
Q ss_pred HHH
Q 017286 323 YQQ 325 (374)
Q Consensus 323 ~~q 325 (374)
..+
T Consensus 465 ~~~ 467 (503)
T KOG2273|consen 465 RRQ 467 (503)
T ss_pred HHH
Confidence 444
No 275
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=63.27 E-value=1e+02 Score=26.84 Aligned_cols=76 Identities=14% Similarity=0.026 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 249 KLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQ 324 (374)
Q Consensus 249 KlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~ 324 (374)
...-+.+++.+++.++.++..+.......+.++..=.+-+.+.-..|..+..+..--......|+.+++-.+..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~ 90 (132)
T PF07926_consen 15 LKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELE 90 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556666666666666666666666655545555555555555555544444444455555554444443
No 276
>PLN03188 kinesin-12 family protein; Provisional
Probab=63.22 E-value=37 Score=40.37 Aligned_cols=58 Identities=24% Similarity=0.301 Sum_probs=39.6
Q ss_pred HHHHHHHHHH----HHHhHHHHHhhHHHHHHHHHHHHH--------HHHHHH----------------HHHHHHHHHHHH
Q 017286 268 TEVSAELEFL----NQQNLILSMENKALKQRLESLAQE--------QLIKCL----------------EHEVLEREIGRL 319 (374)
Q Consensus 268 a~Ls~~i~~L----~~~~~~L~~EN~~LK~rL~aL~q~--------~~lkda----------------~~E~L~~Ei~RL 319 (374)
..|.++|..| ++++..|+-||+-|+.+|..-+.. ..|||| +++.|+++|+.|
T Consensus 1158 ~alaae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~kl 1237 (1320)
T PLN03188 1158 NALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKL 1237 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555 355788999999999988543321 233443 577899999999
Q ss_pred HHHHHH
Q 017286 320 RVVYQQ 325 (374)
Q Consensus 320 r~l~~q 325 (374)
|.-|.+
T Consensus 1238 krkh~~ 1243 (1320)
T PLN03188 1238 KRKHEN 1243 (1320)
T ss_pred HHHHHH
Confidence 998843
No 277
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=63.19 E-value=1.5e+02 Score=28.55 Aligned_cols=66 Identities=23% Similarity=0.339 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 254 AELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRL 319 (374)
Q Consensus 254 ~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RL 319 (374)
.-+||-|..=+.....|...|...+.+...........+...++|+.++.--.+.-..|.+.|..|
T Consensus 115 a~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~L 180 (192)
T PF11180_consen 115 AQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQL 180 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555666666666666666666666666666666665544444444444444333
No 278
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=63.11 E-value=1.1e+02 Score=35.85 Aligned_cols=75 Identities=19% Similarity=0.205 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017286 254 AELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQQQQ 328 (374)
Q Consensus 254 ~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~qqq~ 328 (374)
.+||.....+-.++.+|...|....-.-..+..++.+||+++..+.....-.--.-.+|+-.|..|+.-+.+++.
T Consensus 421 ~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~ 495 (1200)
T KOG0964|consen 421 EDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEK 495 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333345566777888888777654333333455677777778777777555
No 279
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=63.05 E-value=94 Score=38.52 Aligned_cols=82 Identities=29% Similarity=0.313 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhH---------------HHHHHHHHHHHHHH
Q 017286 240 QFAQRSRVRKLQ-YIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENK---------------ALKQRLESLAQEQL 303 (374)
Q Consensus 240 qSAqRSR~RKlq-YI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~---------------~LK~rL~aL~q~~~ 303 (374)
----+.+++|+. -+..|+.....|.+++....+++..|...+..-..-|. .|+.-+..|..+..
T Consensus 1245 ~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~ 1324 (1822)
T KOG4674|consen 1245 IQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEELE 1324 (1822)
T ss_pred HHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 334556666664 36667777777777776666666666644433333332 34445667777777
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 017286 304 IKCLEHEVLEREIGRLRV 321 (374)
Q Consensus 304 lkda~~E~L~~Ei~RLr~ 321 (374)
.++.+++.|+.++.+||.
T Consensus 1325 ~ke~~~~el~~~~~~~q~ 1342 (1822)
T KOG4674|consen 1325 EKENLIAELKKELNRLQE 1342 (1822)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888888888883
No 280
>PRK03918 chromosome segregation protein; Provisional
Probab=62.89 E-value=92 Score=34.40 Aligned_cols=45 Identities=20% Similarity=0.228 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHH
Q 017286 254 AELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESL 298 (374)
Q Consensus 254 ~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL 298 (374)
.+++.++..|+.+.+.+..++..++.+...|..+=..++.+++.|
T Consensus 189 ~~i~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~l~~l 233 (880)
T PRK03918 189 ENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKEL 233 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444443333333
No 281
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=62.63 E-value=20 Score=26.50 Aligned_cols=8 Identities=38% Similarity=0.580 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 017286 312 LEREIGRL 319 (374)
Q Consensus 312 L~~Ei~RL 319 (374)
|+.||.+|
T Consensus 31 L~aev~~L 38 (45)
T PF02183_consen 31 LRAEVQEL 38 (45)
T ss_pred HHHHHHHH
Confidence 33333333
No 282
>PRK11281 hypothetical protein; Provisional
Probab=62.51 E-value=69 Score=37.71 Aligned_cols=16 Identities=25% Similarity=0.447 Sum_probs=10.8
Q ss_pred ccchhhhhhcccccCC
Q 017286 345 RDLDSQFANLSLKHKD 360 (374)
Q Consensus 345 ~~~~~qf~~~~~~~~~ 360 (374)
.+|+.+.|++.|+--|
T Consensus 356 ~~l~~~iAdlrl~~f~ 371 (1113)
T PRK11281 356 EGLADRIADLRLEQFE 371 (1113)
T ss_pred chHHHHHHHHHHHHHH
Confidence 6688888877755433
No 283
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=62.40 E-value=87 Score=28.46 Aligned_cols=14 Identities=36% Similarity=0.669 Sum_probs=6.1
Q ss_pred hhHHHHHHHHHHHH
Q 017286 287 ENKALKQRLESLAQ 300 (374)
Q Consensus 287 EN~~LK~rL~aL~q 300 (374)
.|.+|+.+|+.|..
T Consensus 52 d~eeLk~~i~~lq~ 65 (155)
T PF06810_consen 52 DNEELKKQIEELQA 65 (155)
T ss_pred CHHHHHHHHHHHHH
Confidence 44444444444443
No 284
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=62.40 E-value=20 Score=27.93 Aligned_cols=33 Identities=18% Similarity=0.337 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHH
Q 017286 252 YIAELERNVQSLQAEGTEVSAELEFLNQQNLIL 284 (374)
Q Consensus 252 YI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L 284 (374)
-+..|+..|.+++.|+..|+..|..+++.-..|
T Consensus 8 ~~~~~~~~i~tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 8 ELPRIESSINTVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677888888888888888888876665444
No 285
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=62.27 E-value=64 Score=28.81 Aligned_cols=56 Identities=21% Similarity=0.223 Sum_probs=34.0
Q ss_pred HHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 263 LQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRV 321 (374)
Q Consensus 263 LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~ 321 (374)
|..-.+.+..+|..+ ...|..-.++|.+||+.|....--..++++..++||.-+|.
T Consensus 41 m~~A~~~v~kql~~v---s~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~ 96 (126)
T PF07889_consen 41 MSDAVASVSKQLEQV---SESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVRE 96 (126)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 344444555554444 44566667777788877776655555666666666655554
No 286
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=62.27 E-value=81 Score=30.36 Aligned_cols=73 Identities=27% Similarity=0.244 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 249 KLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRV 321 (374)
Q Consensus 249 KlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~ 321 (374)
|-..|+=|=..++..|+|++.=-.+|-.|..+...+..+......++..+.....-|.+.-|....|++|.+.
T Consensus 8 k~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~ 80 (202)
T PF06818_consen 8 KSGEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKN 80 (202)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhC
Confidence 3345777777777777777777777777777666667666666666666666666666666666666655543
No 287
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=62.01 E-value=78 Score=35.95 Aligned_cols=45 Identities=27% Similarity=0.240 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 271 SAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLERE 315 (374)
Q Consensus 271 s~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~E 315 (374)
...|+..++...+|.+++-+|..+|..-..+.=-+.+..+.+..|
T Consensus 328 kesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE 372 (775)
T PF10174_consen 328 KESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEE 372 (775)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455566666666666666655544444444444444443
No 288
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=61.87 E-value=1.1e+02 Score=30.72 Aligned_cols=51 Identities=25% Similarity=0.238 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 268 TEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGR 318 (374)
Q Consensus 268 a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~R 318 (374)
..|..++..|+++......-=.-||.+|+.|.+.++-+.-+...|..|+.|
T Consensus 54 ~~L~~kl~eLqkk~~Ea~lAVtPLKak~AslV~kc~eRn~Li~~llqel~R 104 (277)
T PF15030_consen 54 DELQGKLEELQKKQHEANLAVTPLKAKLASLVQKCRERNRLITHLLQELHR 104 (277)
T ss_pred HHHHHHHHHHHHHhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777877777777777889999999999999999888888888766
No 289
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=61.87 E-value=68 Score=30.40 Aligned_cols=65 Identities=22% Similarity=0.161 Sum_probs=33.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 257 ERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRV 321 (374)
Q Consensus 257 ErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~ 321 (374)
+-+...|++|.+.|..++.+++..-.....-..-++.|+..+.......+.....|..-|.++|.
T Consensus 149 ~a~~~~l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~R~ 213 (240)
T PF12795_consen 149 EAQRWLLQAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQKRR 213 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666665554444444444555544444444444444444444444443
No 290
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=61.81 E-value=80 Score=31.40 Aligned_cols=64 Identities=28% Similarity=0.299 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 254 AELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQ 324 (374)
Q Consensus 254 ~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~ 324 (374)
.||-.|.+.++.|..+|..+++.| ..|-.++..||+.|+.+.-.-+-....|.-|+.+||.-+.
T Consensus 138 ee~kekl~E~~~EkeeL~~eleel-------e~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ 201 (290)
T COG4026 138 EELKEKLEELQKEKEELLKELEEL-------EAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWD 201 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Confidence 345556666666666666665554 4455556666666666644433334445557777776544
No 291
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=61.78 E-value=67 Score=34.23 Aligned_cols=30 Identities=27% Similarity=0.255 Sum_probs=13.3
Q ss_pred HHhhHHHHHHHHHHHHHhHHHHHhhHHHHH
Q 017286 264 QAEGTEVSAELEFLNQQNLILSMENKALKQ 293 (374)
Q Consensus 264 Q~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~ 293 (374)
.+|..++.+.++..+-....|..||..|..
T Consensus 40 ~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e 69 (459)
T KOG0288|consen 40 RAESRAIKAKLQEKELELNRLQEENTQLNE 69 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444433
No 292
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=61.66 E-value=14 Score=30.97 Aligned_cols=45 Identities=13% Similarity=0.153 Sum_probs=32.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 017286 232 TETKRAKQQFAQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQ 279 (374)
Q Consensus 232 ~DpKRaKRqSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~ 279 (374)
.+|...=|-.-.. -|+.++..|+.+++.|+.+|..|..+|..+.+
T Consensus 64 l~P~~~i~a~l~~---~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 64 LTPEEDIRAHLAP---YKKKEREQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred CChHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4565544422222 34788999999999999999999998887643
No 293
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=61.56 E-value=1.1e+02 Score=35.92 Aligned_cols=62 Identities=23% Similarity=0.237 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhH----------HHHHhhHHHHHHHHHHHH
Q 017286 239 QQFAQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNL----------ILSMENKALKQRLESLAQ 300 (374)
Q Consensus 239 RqSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~----------~L~~EN~~LK~rL~aL~q 300 (374)
+|-+++-=++|-..+.||++.-+-|..++..+-..|.-|++|-+ .|+.-|=.|..|+..|+.
T Consensus 398 ~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLee 469 (1243)
T KOG0971|consen 398 HQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEE 469 (1243)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHH
Confidence 37788888999999999999888888888888888888876643 345555555555555443
No 294
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=61.34 E-value=1.3e+02 Score=30.46 Aligned_cols=10 Identities=50% Similarity=0.663 Sum_probs=5.1
Q ss_pred CcchhhhcCC
Q 017286 73 PSWLDDLLNE 82 (374)
Q Consensus 73 PsWlDDlL~~ 82 (374)
|-=|-|||+.
T Consensus 9 ~isL~dFL~~ 18 (312)
T smart00787 9 PISLQDFLNM 18 (312)
T ss_pred CccHHHHHHH
Confidence 4445555554
No 295
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=61.21 E-value=1.1e+02 Score=32.81 Aligned_cols=49 Identities=29% Similarity=0.310 Sum_probs=35.3
Q ss_pred HHHHhHHHHHhhHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 277 LNQQNLILSMENKALKQRLES----------------------------LAQEQLIKCLEHEVLEREIGRLRVVYQQ 325 (374)
Q Consensus 277 L~~~~~~L~~EN~~LK~rL~a----------------------------L~q~~~lkda~~E~L~~Ei~RLr~l~~q 325 (374)
-++++..|...|.+|.-||.+ |+--..+|+-+...||.||.-||--++-
T Consensus 461 CQrEnQELnaHNQELnnRLaaEItrLRtlltgdGgGtGsplaqgkdayELEVLLRVKEsEiQYLKqEissLkDELQt 537 (593)
T KOG4807|consen 461 CQRENQELNAHNQELNNRLAAEITRLRTLLTGDGGGTGSPLAQGKDAYELEVLLRVKESEIQYLKQEISSLKDELQT 537 (593)
T ss_pred HHHhhHHHHHHHHHHhhHHHHHHHHHHHHhccCCCCCCCccccCcchhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 457788999999999888864 2222345666777888888888875543
No 296
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=61.09 E-value=81 Score=37.05 Aligned_cols=68 Identities=25% Similarity=0.331 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 255 ELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVV 322 (374)
Q Consensus 255 ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l 322 (374)
||+..++.+...+.+-+.++..-++....|.+|--+|+..+...+++..-..-..+.|+.|+..|+.-
T Consensus 791 dl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~k 858 (1174)
T KOG0933|consen 791 DLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAK 858 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444455555566667777777777777777777666666677777777766654
No 297
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=61.07 E-value=56 Score=26.67 Aligned_cols=51 Identities=27% Similarity=0.307 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 268 TEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGR 318 (374)
Q Consensus 268 a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~R 318 (374)
+++-.-|..|+.+-+.++.||=.|+++|..+.|+.-..=-.+++-.+=|-|
T Consensus 4 ~SIP~lL~~lQnEWDa~mLE~f~LRk~l~~~rqELs~aLYq~DAA~RViAr 54 (70)
T PF08606_consen 4 TSIPSLLSTLQNEWDALMLENFTLRKQLDQTRQELSHALYQHDAACRVIAR 54 (70)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 456667889999999999999999999999998754333334444333333
No 298
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=60.98 E-value=61 Score=34.87 Aligned_cols=85 Identities=19% Similarity=0.349 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 017286 241 FAQRSRVRKLQYIAELERNVQSLQA---EGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIK-CLEHEVLEREI 316 (374)
Q Consensus 241 SAqRSR~RKlqYI~ELErkVq~LQ~---E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lk-da~~E~L~~Ei 316 (374)
.|.|-+..-++++.++-..+..||. +...|..+|...+.++.....|.-.|..+|.....-.-++ .+++|.+++||
T Consensus 232 ~ay~Qnk~akehv~km~kdle~Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~rkel 311 (575)
T KOG4403|consen 232 FAYRQNKKAKEHVNKMMKDLEGLQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSRKEL 311 (575)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHHHHH
Confidence 3444444444555555555555554 3444555666665555556666666665555222222222 45788888899
Q ss_pred HHHHHHHHH
Q 017286 317 GRLRVVYQQ 325 (374)
Q Consensus 317 ~RLr~l~~q 325 (374)
+.||..+.-
T Consensus 312 E~lR~~L~k 320 (575)
T KOG4403|consen 312 EQLRVALEK 320 (575)
T ss_pred HHHHHHHHH
Confidence 999886543
No 299
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=60.92 E-value=1.2e+02 Score=29.13 Aligned_cols=76 Identities=24% Similarity=0.300 Sum_probs=45.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-----------HHHHHHHH----HHHhHHHH-------HhhHH
Q 017286 233 ETKRAKQQFAQRSRVRKLQYIAELERNVQSLQAEGTE-----------VSAELEFL----NQQNLILS-------MENKA 290 (374)
Q Consensus 233 DpKRaKRqSAqRSR~RKlqYI~ELErkVq~LQ~E~a~-----------Ls~~i~~L----~~~~~~L~-------~EN~~ 290 (374)
+..|.||+ +.+||.++...+.+... ++.++..| +++...|. ..=+.
T Consensus 97 EevrLkrE------------La~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~ 164 (195)
T PF12761_consen 97 EEVRLKRE------------LAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEEGRSKSGKNLKS 164 (195)
T ss_pred HHHHHHHH------------HHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHH
Confidence 36677765 56777777777776664 23343333 22222221 01145
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 291 LKQRLESLAQEQLIKCLEHEVLEREIGRLR 320 (374)
Q Consensus 291 LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr 320 (374)
++..|+.+++|.-.-+.+-..=+.|++.|+
T Consensus 165 v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 165 VREDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 788888888887776666666677777765
No 300
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=60.83 E-value=74 Score=33.15 Aligned_cols=33 Identities=27% Similarity=0.249 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHH
Q 017286 251 QYIAELERNVQSLQAEGTEVSAELEFLNQQNLI 283 (374)
Q Consensus 251 qYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~ 283 (374)
..|.+|..+...|+.+...|..+...+.++-..
T Consensus 28 d~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~ 60 (425)
T PRK05431 28 DELLELDEERRELQTELEELQAERNALSKEIGQ 60 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666555555555555555555554433
No 301
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=60.82 E-value=56 Score=33.92 Aligned_cols=28 Identities=21% Similarity=0.239 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 017286 251 QYIAELERNVQSLQAEGTEVSAELEFLN 278 (374)
Q Consensus 251 qYI~ELErkVq~LQ~E~a~Ls~~i~~L~ 278 (374)
..|.+|..+-..|+.+...|..+...+.
T Consensus 30 d~i~~ld~~~r~~~~~~~~l~~erN~~s 57 (418)
T TIGR00414 30 EKLIALDDERKKLLSEIEELQAKRNELS 57 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 302
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=60.78 E-value=49 Score=34.43 Aligned_cols=46 Identities=30% Similarity=0.403 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH---hHHHHHhhHHHHHHHHHHHH
Q 017286 255 ELERNVQSLQAEGTEVSAELEFLNQQ---NLILSMENKALKQRLESLAQ 300 (374)
Q Consensus 255 ELErkVq~LQ~E~a~Ls~~i~~L~~~---~~~L~~EN~~LK~rL~aL~q 300 (374)
+|..+++.|+.|...++.+|..+... ...|..|-++||.+|+.++.
T Consensus 39 ~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 87 (425)
T PRK05431 39 ELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEA 87 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777777777777664322 23455555555555555544
No 303
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.73 E-value=33 Score=39.23 Aligned_cols=44 Identities=25% Similarity=0.290 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLE 296 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~ 296 (374)
|++|-..+..|+.|+..|.+++..+..++..|.-++.-||.+|.
T Consensus 673 ~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 673 IENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55666677777777777777777777777777777777777776
No 304
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=60.55 E-value=39 Score=31.69 Aligned_cols=48 Identities=29% Similarity=0.382 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHH
Q 017286 252 YIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQL 303 (374)
Q Consensus 252 YI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~ 303 (374)
=|+=.||+|+.|..++..|..+++.|-+ .-.+|..+-.++..+.-.-+
T Consensus 41 avSL~erQ~~~LR~~~~~L~~~l~~Li~----~Ar~Ne~~~~~~~~l~l~LL 88 (225)
T PF04340_consen 41 AVSLVERQLERLRERNRQLEEQLEELIE----NARENEAIFQRLHRLVLALL 88 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHh
Confidence 3666778888888888888887777633 34566677677666665544
No 305
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=60.55 E-value=90 Score=35.69 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQ 279 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~ 279 (374)
+.|..+..+.||..+.+|..-|..+..
T Consensus 443 l~es~k~~e~lq~kneellk~~e~q~~ 469 (861)
T PF15254_consen 443 LQESLKSQELLQSKNEELLKVIENQKE 469 (861)
T ss_pred HHHHHHhHHHHHHhHHHHHHHHHHHHH
Confidence 455666666677666666655544433
No 306
>PF13166 AAA_13: AAA domain
Probab=60.53 E-value=1.6e+02 Score=31.85 Aligned_cols=68 Identities=21% Similarity=0.270 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 252 YIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRL 319 (374)
Q Consensus 252 YI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RL 319 (374)
++.+++..+..++.+...+...+..+......+..+-..++..+..|+.+..--+..-+.+..|+.+|
T Consensus 404 ~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 404 LIAKLKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 55666666666667777777777777776667777777777777777765443344455556665555
No 307
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=60.40 E-value=28 Score=33.42 Aligned_cols=33 Identities=24% Similarity=0.197 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHH
Q 017286 266 EGTEVSAELEFLNQQNLILSMENKALKQRLESL 298 (374)
Q Consensus 266 E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL 298 (374)
|......++.+|......|..|...|+..+..+
T Consensus 74 ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 74 ELQRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred HHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 333333344444444444566666666666664
No 308
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=60.27 E-value=30 Score=25.58 Aligned_cols=37 Identities=30% Similarity=0.394 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHH
Q 017286 256 LERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLA 299 (374)
Q Consensus 256 LErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~ 299 (374)
||+....|...-.+|.. ++..|..||..|+..|..|.
T Consensus 3 lE~Dy~~LK~~yd~Lk~-------~~~~L~~E~~~L~aev~~L~ 39 (45)
T PF02183_consen 3 LERDYDALKASYDSLKA-------EYDSLKKENEKLRAEVQELK 39 (45)
T ss_pred hHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 45555555444444444 44444555555555555443
No 309
>PLN02678 seryl-tRNA synthetase
Probab=60.24 E-value=1.1e+02 Score=32.62 Aligned_cols=68 Identities=18% Similarity=0.178 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 250 LQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSM---ENKALKQRLESLAQEQLIKCLEHEVLEREIG 317 (374)
Q Consensus 250 lqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~---EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~ 317 (374)
+..|.+|..+...|+.++..|..+...+..+-..+.. +-.+|+.++..|.++..-.+.....++.|+.
T Consensus 32 id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~ 102 (448)
T PLN02678 32 VDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALD 102 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777666666666666666666555443221 1124444444444433333333444444443
No 310
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=60.13 E-value=46 Score=33.45 Aligned_cols=57 Identities=23% Similarity=0.404 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHH-----HH--HHHhHHHHHhhHHHHHHHHHHHHH--HHHHHHH
Q 017286 252 YIAELERNVQSLQAEGTEVSAELE-----FL--NQQNLILSMENKALKQRLESLAQE--QLIKCLE 308 (374)
Q Consensus 252 YI~ELErkVq~LQ~E~a~Ls~~i~-----~L--~~~~~~L~~EN~~LK~rL~aL~q~--~~lkda~ 308 (374)
-+-++|-+|+.|+.-+..|+.+|+ ++ -.....+..|=.++.++|..|+.. .+|..+-
T Consensus 218 Rmk~aEaqvneLEvsN~DLsaKLe~gknaY~~~ieke~q~raeL~acEEkl~kmeE~Qa~~l~~aR 283 (311)
T PF04642_consen 218 RMKEAEAQVNELEVSNIDLSAKLEPGKNAYLAAIEKENQARAELNACEEKLKKMEEEQAEMLRAAR 283 (311)
T ss_pred HHHHHHhhhhheecccHHHHHhhcCCcchHHHHHhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 356899999999999999999982 22 234455677778888888888743 4444443
No 311
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=60.03 E-value=2.3e+02 Score=30.55 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhHHHHHhhHHHHHHHHH
Q 017286 271 SAELEFLNQQNLILSMENKALKQRLES 297 (374)
Q Consensus 271 s~~i~~L~~~~~~L~~EN~~LK~rL~a 297 (374)
..++..++.....+..++.+|+.+++.
T Consensus 66 ~~~l~~~~~~~~~~~~~~~~l~~~le~ 92 (475)
T PRK10361 66 NNEVRSLQSINTSLEADLREVTTRMEA 92 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444433
No 312
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=59.87 E-value=56 Score=36.68 Aligned_cols=70 Identities=27% Similarity=0.235 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 250 LQYIAELERNVQSLQAEGTEVSA---ELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVY 323 (374)
Q Consensus 250 lqYI~ELErkVq~LQ~E~a~Ls~---~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~ 323 (374)
++|+.+||+....+..|.++++. .+.+|+.+...|..++.. +..|......-+.+|+-|+.|.+|-..+-
T Consensus 250 lqel~~l~~a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~~----~~~l~~~~~~LELeN~~l~tkL~rwE~~~ 322 (716)
T KOG4593|consen 250 LQELEELERALSQLREELATLRENRETVGLLQEELEGLQSKLGR----LEKLQSTLLGLELENEDLLTKLQRWERAD 322 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH----HHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 46666666666666666664443 455555555555555543 34455566666677777777777765543
No 313
>PRK02793 phi X174 lysis protein; Provisional
Probab=59.86 E-value=58 Score=26.12 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Q 017286 254 AELERNVQSLQAEGTEVSAELEFL 277 (374)
Q Consensus 254 ~ELErkVq~LQ~E~a~Ls~~i~~L 277 (374)
++||.++..|+..++-+-..|..|
T Consensus 4 ~~~e~Ri~~LE~~lafQe~tIe~L 27 (72)
T PRK02793 4 SSLEARLAELESRLAFQEITIEEL 27 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666655544444444433
No 314
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=59.73 E-value=52 Score=36.41 Aligned_cols=53 Identities=25% Similarity=0.301 Sum_probs=31.7
Q ss_pred HHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 262 SLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVV 322 (374)
Q Consensus 262 ~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l 322 (374)
+|..|..+...+|..|.++......+-.+|+.+|++- .-+|++|+|+.=||.+
T Consensus 307 S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~--------sDYeeIK~ELsiLk~i 359 (629)
T KOG0963|consen 307 SLVEEREKHKAQISALEKELKAKISELEELKEKLNSR--------SDYEEIKKELSILKAI 359 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------ccHHHHHHHHHHHHHh
Confidence 3344555555555555555555554444444444443 4588999999888874
No 315
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=59.71 E-value=22 Score=37.94 Aligned_cols=18 Identities=17% Similarity=0.272 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 017286 291 LKQRLESLAQEQLIKCLE 308 (374)
Q Consensus 291 LK~rL~aL~q~~~lkda~ 308 (374)
|..+++.|.....|.+++
T Consensus 214 L~~e~~~L~n~e~i~~~~ 231 (563)
T TIGR00634 214 LEAEQQRLSNLEKLRELS 231 (563)
T ss_pred HHHHHHHHhCHHHHHHHH
Confidence 444444444444444433
No 316
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=59.69 E-value=51 Score=25.96 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHH
Q 017286 256 LERNVQSLQAEGTEVSAELEFL 277 (374)
Q Consensus 256 LErkVq~LQ~E~a~Ls~~i~~L 277 (374)
||.+|..|++.++-+-..|..|
T Consensus 2 le~Ri~~LE~~la~qe~~ie~L 23 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEEL 23 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555444444444443
No 317
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=59.67 E-value=2e+02 Score=29.69 Aligned_cols=83 Identities=30% Similarity=0.386 Sum_probs=46.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhcC---
Q 017286 257 ERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQ---QQQQQ--- 330 (374)
Q Consensus 257 ErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~q---qq~~~--- 330 (374)
|..++.|..|-..+-.+|..|.+++..+..|-..|.+ -=+|++-|=.||++ +||-.
T Consensus 25 e~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~------------------qyrecqell~lyq~ylseqq~kl~~ 86 (328)
T PF15369_consen 25 EVTEERLKAEQESFEKKIRQLEEQNELIIKEREDLQQ------------------QYRECQELLSLYQKYLSEQQEKLTM 86 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455556666666666666666655555444333321 12566666667666 33311
Q ss_pred ----------CCCCCCc--cccCCCCccchhhhhhcccc
Q 017286 331 ----------PPQKPSS--SHRRTSSRDLDSQFANLSLK 357 (374)
Q Consensus 331 ----------~q~~~~~--~~~~~~s~~~~~qf~~~~~~ 357 (374)
..|+++. ++.++-+-+||--|.++.--
T Consensus 87 s~~~l~~~~~~~q~vsskKs~~qsss~eLDGSYLsvA~p 125 (328)
T PF15369_consen 87 SLSELSAARMKEQQVSSKKSPLQSSSSELDGSYLSVAKP 125 (328)
T ss_pred CHHHhhhhhhhhccCCcCCCCCCCCCCCCCcchhccccc
Confidence 1233332 35677788899988877643
No 318
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=59.53 E-value=1e+02 Score=30.84 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 017286 251 QYIAELERNVQSLQAEGTEVSAELEFL 277 (374)
Q Consensus 251 qYI~ELErkVq~LQ~E~a~Ls~~i~~L 277 (374)
+-|-..|..|+-+..--..|..+|..|
T Consensus 131 K~IR~~E~sl~p~R~~r~~l~d~I~kL 157 (271)
T PF13805_consen 131 KSIRNREESLQPSRDRRRKLQDEIAKL 157 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHhHHHHHHHHHH
Confidence 344444555554444444444444444
No 319
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=59.29 E-value=64 Score=28.17 Aligned_cols=76 Identities=32% Similarity=0.306 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017286 250 LQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQQ 326 (374)
Q Consensus 250 lqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~qq 326 (374)
..||..|.. |+.++.+...|..+...|.+.+..+..+-..+|.+|..+-.+..........+..+...|-.-|..+
T Consensus 20 ~~~v~~l~~-~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s~~ 95 (150)
T PF07200_consen 20 DAFVKSLPQ-VQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNYSPD 95 (150)
T ss_dssp HHHGGGGS---HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHcCHH-HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHH
No 320
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=59.20 E-value=64 Score=31.20 Aligned_cols=11 Identities=36% Similarity=0.486 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 017286 315 EIGRLRVVYQQ 325 (374)
Q Consensus 315 Ei~RLr~l~~q 325 (374)
||+-=|+.++.
T Consensus 88 ~~e~~r~~fek 98 (228)
T PRK06800 88 EIEAARQQFQK 98 (228)
T ss_pred HHHHHHHHHHH
Confidence 33333444433
No 321
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=59.15 E-value=21 Score=32.07 Aligned_cols=43 Identities=33% Similarity=0.349 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRL 295 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL 295 (374)
|...|.-|+.|+.|+..=-.+|..|.++...+...|+.|..||
T Consensus 89 i~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekrl 131 (131)
T PF04859_consen 89 IKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKRL 131 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 4455666666666666666666666666666677777766553
No 322
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=59.00 E-value=36 Score=37.40 Aligned_cols=9 Identities=67% Similarity=0.641 Sum_probs=3.6
Q ss_pred hhhcCCCCC
Q 017286 326 QQQQQPPQK 334 (374)
Q Consensus 326 qq~~~~q~~ 334 (374)
|||||+|||
T Consensus 643 ~~~~~~~~~ 651 (657)
T PTZ00186 643 QQQQQQQQQ 651 (657)
T ss_pred HHHHHHHhh
Confidence 333334444
No 323
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=58.72 E-value=96 Score=31.36 Aligned_cols=43 Identities=16% Similarity=0.173 Sum_probs=20.4
Q ss_pred HHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 017286 262 SLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCL 307 (374)
Q Consensus 262 ~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda 307 (374)
.|.=++-.|+-+|..|++....|.-| ++.++..++.++..-+.
T Consensus 109 ~l~yqvd~Lkd~lee~eE~~~~~~re---~~eK~~elEr~K~~~d~ 151 (302)
T PF09738_consen 109 ALMYQVDLLKDKLEELEETLAQLQRE---YREKIRELERQKRAHDS 151 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444333 34555666666654444
No 324
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=58.66 E-value=1.4e+02 Score=29.73 Aligned_cols=69 Identities=20% Similarity=0.298 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHH----HHHhHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 017286 251 QYIAELERNVQSLQAEGTEVSAELEFL----NQQNLILSMENKALKQRLESLAQEQL-IKCLEHEVLEREIGRL 319 (374)
Q Consensus 251 qYI~ELErkVq~LQ~E~a~Ls~~i~~L----~~~~~~L~~EN~~LK~rL~aL~q~~~-lkda~~E~L~~Ei~RL 319 (374)
..+..|+..|..|.+++.....+|.+| +++.-.-.+.=..|+.+|+.+....+ =.|.+++..+.|...|
T Consensus 81 ~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~e~~~~el~~l 154 (258)
T PF15397_consen 81 SKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDELNEMRQMELASL 154 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666555 34444444455555555655553322 2233444444444333
No 325
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=58.42 E-value=1.7e+02 Score=27.65 Aligned_cols=64 Identities=22% Similarity=0.235 Sum_probs=30.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 260 VQSLQAEGTEVSAELEFLNQQNLILSM---ENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVY 323 (374)
Q Consensus 260 Vq~LQ~E~a~Ls~~i~~L~~~~~~L~~---EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~ 323 (374)
++.++.|+..|..++...+++...|.. .-..+...|..|..+..+.+--.+.|.+|-..|..-+
T Consensus 64 L~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf 130 (201)
T PF13851_consen 64 LKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKF 130 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555554444322 2223344445555444444444555555555555433
No 326
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.41 E-value=37 Score=37.48 Aligned_cols=21 Identities=29% Similarity=0.275 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHH
Q 017286 251 QYIAELERNVQSLQAEGTEVS 271 (374)
Q Consensus 251 qYI~ELErkVq~LQ~E~a~Ls 271 (374)
+.-+|||..-.+||..++.|.
T Consensus 170 seYSELEEENIsLQKqVs~LR 190 (772)
T KOG0999|consen 170 SEYSELEEENISLQKQVSNLR 190 (772)
T ss_pred HHHHHHHHhcchHHHHHHHHh
Confidence 334445554444444444443
No 327
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=57.96 E-value=80 Score=34.68 Aligned_cols=74 Identities=24% Similarity=0.263 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHH-HHH------HHHHHHHHHHHHHHHHHHH
Q 017286 252 YIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQ-LIK------CLEHEVLEREIGRLRVVYQ 324 (374)
Q Consensus 252 YI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~-~lk------da~~E~L~~Ei~RLr~l~~ 324 (374)
-|.+|+..+..+..++..|...+..+..+...+..++.+|...+...+.-. ++- .-|++.+..--+||..|-.
T Consensus 336 ~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~~rl~~L~~ 415 (594)
T PF05667_consen 336 QLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEASEQRLVELAQ 415 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788888888888888888888887777777777777766555443331 222 2345666666667766655
Q ss_pred H
Q 017286 325 Q 325 (374)
Q Consensus 325 q 325 (374)
|
T Consensus 416 q 416 (594)
T PF05667_consen 416 Q 416 (594)
T ss_pred H
Confidence 5
No 328
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=57.94 E-value=1.7e+02 Score=27.60 Aligned_cols=73 Identities=25% Similarity=0.261 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLE-HEVLEREIGRLRVVYQQ 325 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~-~E~L~~Ei~RLr~l~~q 325 (374)
+..+..++..++.+...|..+-..|.+....|..|-.+|..+....-++.+-+-.+ +-.|++-+.-|.....+
T Consensus 88 L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~ 161 (201)
T PF13851_consen 88 LQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEK 161 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666666666666777777776666666665555544 44555555555554443
No 329
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=57.71 E-value=1.9e+02 Score=32.30 Aligned_cols=19 Identities=32% Similarity=0.289 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 017286 305 KCLEHEVLEREIGRLRVVY 323 (374)
Q Consensus 305 kda~~E~L~~Ei~RLr~l~ 323 (374)
||-++..|-.+|+|++..+
T Consensus 290 kd~~i~~L~~di~~~~~S~ 308 (629)
T KOG0963|consen 290 KDSEIAQLSNDIERLEASL 308 (629)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555556666666665543
No 330
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=57.60 E-value=1.5e+02 Score=28.83 Aligned_cols=88 Identities=19% Similarity=0.162 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-------HhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 241 FAQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQ-------QNLILSMENKALKQRLESLAQEQLIKCLEHEVLE 313 (374)
Q Consensus 241 SAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~-------~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~ 313 (374)
.|+..=.+...=+.+||.+.+.++.+...|..+...+.+ +......|+..|..++..+......-....+.-.
T Consensus 23 ~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke 102 (246)
T PF00769_consen 23 RAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKE 102 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455556677777777777766666665544444 4444455666677777777777665566677788
Q ss_pred HHHHHHHHHHHHhhh
Q 017286 314 REIGRLRVVYQQQQQ 328 (374)
Q Consensus 314 ~Ei~RLr~l~~qqq~ 328 (374)
+|+.+|+.-....+.
T Consensus 103 ~Ea~~lq~el~~ar~ 117 (246)
T PF00769_consen 103 EEAEELQEELEEARE 117 (246)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888876666444
No 331
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=57.50 E-value=24 Score=33.43 Aligned_cols=43 Identities=21% Similarity=0.203 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 017286 234 TKRAKQQFAQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFL 277 (374)
Q Consensus 234 pKRaKRqSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L 277 (374)
-.|.+|.-+.+ .+...+.|.||+.+|+.|++++..+...+..|
T Consensus 90 y~R~~~~e~~k-ee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L 132 (181)
T KOG3335|consen 90 YWRQARKERKK-EEKRKQEIMELRLKVEKLENAIAELTKFFSQL 132 (181)
T ss_pred hHHhhhcchhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55665544333 67777899999999999888766666666555
No 332
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.48 E-value=2.1e+02 Score=28.46 Aligned_cols=68 Identities=24% Similarity=0.284 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHh---HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017286 254 AELERNVQSLQAEGTEVSAELEFLNQQN---LILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQQQQ 328 (374)
Q Consensus 254 ~ELErkVq~LQ~E~a~Ls~~i~~L~~~~---~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~qqq~ 328 (374)
.|+|+-++.|......|....+++++.+ ..+..|=+.++.+|+.|.. -.+-|+.|..++|.+..++.+
T Consensus 58 ~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~elEvl~~-------n~Q~lkeE~dd~keiIs~kr~ 128 (246)
T KOG4657|consen 58 VELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQSELEVLRR-------NLQLLKEEKDDSKEIISQKRQ 128 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhHHHHHHHHHH
Confidence 4666666666666666666666555443 2334444555555555554 344566677777777777664
No 333
>PF15112 DUF4559: Domain of unknown function (DUF4559)
Probab=57.30 E-value=50 Score=33.65 Aligned_cols=20 Identities=15% Similarity=0.127 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 017286 306 CLEHEVLEREIGRLRVVYQQ 325 (374)
Q Consensus 306 da~~E~L~~Ei~RLr~l~~q 325 (374)
..+.+.|..||+.|..+..+
T Consensus 270 kDL~~~l~~e~qkL~~l~~k 289 (307)
T PF15112_consen 270 KDLRSNLQEELQKLDSLQTK 289 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34677888999999887655
No 334
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=57.24 E-value=93 Score=33.80 Aligned_cols=49 Identities=22% Similarity=0.206 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHH---HH----HhHHHHHhhHHHHHHHHHHHH
Q 017286 252 YIAELERNVQSLQAEGTEVSAELEFL---NQ----QNLILSMENKALKQRLESLAQ 300 (374)
Q Consensus 252 YI~ELErkVq~LQ~E~a~Ls~~i~~L---~~----~~~~L~~EN~~LK~rL~aL~q 300 (374)
-+.+||.++..|+.+..+|..++..- +. ....|..|-.+++.+|+.+..
T Consensus 564 ~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 619 (638)
T PRK10636 564 EIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEM 619 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888888887431 11 233444444555555554443
No 335
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=57.18 E-value=97 Score=31.54 Aligned_cols=10 Identities=20% Similarity=0.541 Sum_probs=5.1
Q ss_pred HHHHHHHHHH
Q 017286 314 REIGRLRVVY 323 (374)
Q Consensus 314 ~Ei~RLr~l~ 323 (374)
.|++..+..|
T Consensus 187 ~~~~~~~~~~ 196 (421)
T TIGR03794 187 DAADKARAIY 196 (421)
T ss_pred HHHHHHhhhh
Confidence 4455555555
No 336
>PRK15396 murein lipoprotein; Provisional
Probab=57.01 E-value=66 Score=26.58 Aligned_cols=13 Identities=31% Similarity=0.465 Sum_probs=4.7
Q ss_pred HHHHHHHHhhHHH
Q 017286 258 RNVQSLQAEGTEV 270 (374)
Q Consensus 258 rkVq~LQ~E~a~L 270 (374)
..|+.|+.++..|
T Consensus 32 sqV~~L~~kvdql 44 (78)
T PRK15396 32 SDVQTLNAKVDQL 44 (78)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 337
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=56.76 E-value=1.3e+02 Score=28.18 Aligned_cols=31 Identities=19% Similarity=0.176 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 017286 241 FAQRSRVRKLQYIAELERNVQSLQAEGTEVS 271 (374)
Q Consensus 241 SAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls 271 (374)
.+-.-|.++++|...++..+..+++....|.
T Consensus 105 ~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~ 135 (216)
T cd07627 105 AAFAQRQKLWQYWQSAESELSKKKAQLEKLK 135 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445567888888888888888777777664
No 338
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=56.69 E-value=1e+02 Score=28.76 Aligned_cols=25 Identities=20% Similarity=0.203 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 240 QFAQRSRVRKLQYIAELERNVQSLQ 264 (374)
Q Consensus 240 qSAqRSR~RKlqYI~ELErkVq~LQ 264 (374)
......-.+...-|.+|+.++..+.
T Consensus 72 ~~l~~~~~~~~~~i~~l~~~i~~~~ 96 (188)
T PF03962_consen 72 EKLQKEIEELEKKIEELEEKIEEAK 96 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444455555555555554
No 339
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=56.53 E-value=1.7e+02 Score=27.86 Aligned_cols=48 Identities=23% Similarity=0.220 Sum_probs=35.7
Q ss_pred HHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 274 LEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRV 321 (374)
Q Consensus 274 i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~ 321 (374)
+..+...+..+..||..|...|.-+-++..--++....|++.-+.|+.
T Consensus 151 ~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~ 198 (206)
T PF14988_consen 151 KKSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQ 198 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666777888888888888888888777777777777766666654
No 340
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=56.45 E-value=71 Score=36.58 Aligned_cols=71 Identities=18% Similarity=0.092 Sum_probs=51.4
Q ss_pred HHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 017286 263 LQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQQQQQQPPQ 333 (374)
Q Consensus 263 LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~qqq~~~~q~ 333 (374)
=+..+..|+..+....++-..+...|..|+..+..+.|-..--+++.-.|+--+...|.+|+|++..+...
T Consensus 63 e~~~n~~Lsq~L~~~~~r~n~~~~dd~~l~~l~~ql~q~~r~i~eq~~~lr~sL~l~~~~~~q~~~lP~~~ 133 (835)
T COG3264 63 ELAINDQLSQALNQQTERLNALASDDRQLANLLLQLLQSSRTIREQIAVLRGSLLLSRILLQQLGPLPEAG 133 (835)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCCC
Confidence 33456677777777777777888888888777777777655556667788888888888888877654333
No 341
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=56.37 E-value=1.2e+02 Score=31.07 Aligned_cols=31 Identities=26% Similarity=0.258 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHhHHHHHhhHHHHHHHHHHH
Q 017286 269 EVSAELEFLNQQNLILSMENKALKQRLESLA 299 (374)
Q Consensus 269 ~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~ 299 (374)
.|..-|.....++..|..|...|+++|..+.
T Consensus 69 ~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~q 99 (319)
T PF09789_consen 69 NLAQLLSESREQNKKLKEEVEELRQKLNEAQ 99 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333334444444444444444444444333
No 342
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=56.33 E-value=1.7e+02 Score=32.99 Aligned_cols=43 Identities=23% Similarity=0.251 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHH
Q 017286 251 QYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQ 293 (374)
Q Consensus 251 qYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~ 293 (374)
..|++||.+-..|+.+..++...+..+++....|..+-..|+.
T Consensus 520 ~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~ 562 (782)
T PRK00409 520 ELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQE 562 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555444444444444444444444444433
No 343
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=56.32 E-value=49 Score=32.11 Aligned_cols=34 Identities=26% Similarity=0.214 Sum_probs=12.8
Q ss_pred HhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHH
Q 017286 265 AEGTEVSAELEFLNQQNLILSMENKALKQRLESL 298 (374)
Q Consensus 265 ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL 298 (374)
++...|..++...+.+-..+..++.+|+.+.+.+
T Consensus 158 ~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~ 191 (216)
T KOG1962|consen 158 ADLEKLETELEKKQKKLEKAQKKVDALKKQSEGL 191 (216)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3333333333333333333333333444433333
No 344
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=56.28 E-value=55 Score=36.35 Aligned_cols=51 Identities=25% Similarity=0.283 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHH
Q 017286 255 ELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIK 305 (374)
Q Consensus 255 ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lk 305 (374)
+|=.+|..|.-|...|..++...++-...|...+++|.+.|..+.+++..+
T Consensus 326 DLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~a 376 (832)
T KOG2077|consen 326 DLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDA 376 (832)
T ss_pred HHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566678888888888888888887777888888888888888777777655
No 345
>PRK11239 hypothetical protein; Provisional
Probab=56.18 E-value=17 Score=35.29 Aligned_cols=28 Identities=25% Similarity=0.340 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQQ 280 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~~ 280 (374)
+.+||.+|..|+.|++.|.++|..|..+
T Consensus 185 ~~~Le~rv~~Le~eva~L~~~l~~l~~~ 212 (215)
T PRK11239 185 DGDLQARVEALEIEVAELKQRLDSLLAH 212 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3679999999999999999999988654
No 346
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=56.15 E-value=36 Score=37.73 Aligned_cols=54 Identities=28% Similarity=0.220 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 266 EGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRL 319 (374)
Q Consensus 266 E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RL 319 (374)
-.++++.+|+.|+-.+..|..|=.++..++++|.+.-.-+...-++||.||+.-
T Consensus 87 I~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqa 140 (907)
T KOG2264|consen 87 ILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQA 140 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHH
Confidence 346778888888888999999999999999999987777777777788777653
No 347
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=56.13 E-value=65 Score=33.11 Aligned_cols=26 Identities=23% Similarity=0.463 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHH
Q 017286 251 QYIAELERNVQSLQAEGTEVSAELEF 276 (374)
Q Consensus 251 qYI~ELErkVq~LQ~E~a~Ls~~i~~ 276 (374)
+|+..|+.++..|+.++..|..++..
T Consensus 242 ~~~~~l~~~~~~~~~~i~~l~~~l~~ 267 (406)
T PF02388_consen 242 EYLESLQEKLEKLEKEIEKLEEKLEK 267 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555555555555555555554443
No 348
>PF14282 FlxA: FlxA-like protein
Probab=56.04 E-value=57 Score=27.74 Aligned_cols=56 Identities=21% Similarity=0.326 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 251 QYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVY 323 (374)
Q Consensus 251 qYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~ 323 (374)
..|..|+++++.|+.++..|..- ..|.. ..-+.+++.|.. ....|...|.+|..--
T Consensus 19 ~~I~~L~~Qi~~Lq~ql~~l~~~--------~~~~~--e~k~~q~q~Lq~-------QI~~LqaQI~qlq~q~ 74 (106)
T PF14282_consen 19 SQIEQLQKQIKQLQEQLQELSQD--------SDLDA--EQKQQQIQLLQA-------QIQQLQAQIAQLQSQQ 74 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc--------cCCCH--HHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 34666777776666666655542 11222 223444444444 4556666666555433
No 349
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=55.86 E-value=71 Score=26.59 Aligned_cols=49 Identities=24% Similarity=0.304 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHH
Q 017286 252 YIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQ 300 (374)
Q Consensus 252 YI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q 300 (374)
-|.+|-..|++|...+..|...+..+..+.....+|+..-++||....+
T Consensus 26 K~dqlss~vq~LnAkv~qLe~dv~a~~~~~qAAk~eaarAn~rldn~a~ 74 (78)
T COG4238 26 KIDQLSSDVQTLNAKVDQLENDVNAMRSDVQAAKDEAARANQRLDNQAQ 74 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 3566677777777777777777777777777777788877888776544
No 350
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=55.35 E-value=17 Score=29.02 Aligned_cols=26 Identities=42% Similarity=0.409 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHH
Q 017286 251 QYIAELERNVQSLQAEGTEVSAELEF 276 (374)
Q Consensus 251 qYI~ELErkVq~LQ~E~a~Ls~~i~~ 276 (374)
--+.|||.+|-.||.|+.-|.+++..
T Consensus 25 lsV~El~eRIalLq~EIeRlkAe~~k 50 (65)
T COG5509 25 LSVAELEERIALLQAEIERLKAELAK 50 (65)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34789999999999999999887764
No 351
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=55.33 E-value=1.3e+02 Score=30.85 Aligned_cols=70 Identities=27% Similarity=0.367 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHh----hHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 244 RSRVRKLQYIAELER---NVQSLQAE----GTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREI 316 (374)
Q Consensus 244 RSR~RKlqYI~ELEr---kVq~LQ~E----~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei 316 (374)
.+.++--.|+.|.|. +...||.. ..+|...|.....+...|++||..|..+|+.=.| --|.|+.||
T Consensus 21 q~qekE~ky~ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkLe~EKq-------~kerLEtEi 93 (305)
T PF14915_consen 21 QNQEKEKKYLEDIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKLEKEKQ-------NKERLETEI 93 (305)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHhHH-------HHHHHHHHH
Confidence 355666778877654 23334433 2456667777888888899999999998866555 245677777
Q ss_pred HHHH
Q 017286 317 GRLR 320 (374)
Q Consensus 317 ~RLr 320 (374)
+-.|
T Consensus 94 ES~r 97 (305)
T PF14915_consen 94 ESYR 97 (305)
T ss_pred HHHH
Confidence 7444
No 352
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=55.23 E-value=1.3e+02 Score=36.02 Aligned_cols=41 Identities=27% Similarity=0.307 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHH
Q 017286 251 QYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKAL 291 (374)
Q Consensus 251 qYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~L 291 (374)
+-|.||++++..|..++..+..+++.|.+....|..|-..+
T Consensus 742 ~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~ 782 (1353)
T TIGR02680 742 RRIAELDARLAAVDDELAELARELRALGARQRALADELAGA 782 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34789999999999999999999999988888888886655
No 353
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=55.12 E-value=2e+02 Score=32.52 Aligned_cols=40 Identities=18% Similarity=0.153 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHH
Q 017286 252 YIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKAL 291 (374)
Q Consensus 252 YI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~L 291 (374)
.|++||+.-..++.+..++......+++....|..+-.+|
T Consensus 516 li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l 555 (771)
T TIGR01069 516 LIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEEL 555 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444554444444444444444444444433343333333
No 354
>PLN02939 transferase, transferring glycosyl groups
Probab=54.83 E-value=2.2e+02 Score=33.39 Aligned_cols=63 Identities=22% Similarity=0.241 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-----------------------------------HHHHhHH
Q 017286 239 QQFAQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEF-----------------------------------LNQQNLI 283 (374)
Q Consensus 239 RqSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~-----------------------------------L~~~~~~ 283 (374)
|.-|---=.+=+..-++|..+|+.|+...++--+++.+ |..+...
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (977)
T PLN02939 151 RLQALEDLEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIRGATEGLCVHSLSKELDV 230 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhhhccccchhhHHHHHHHhhhhhccccccccccccHHHHHHH
Confidence 44454455556667778888888888776662221111 4566677
Q ss_pred HHHhhHHHHHHHHHHHHH
Q 017286 284 LSMENKALKQRLESLAQE 301 (374)
Q Consensus 284 L~~EN~~LK~rL~aL~q~ 301 (374)
|..||.-||..|+.|..+
T Consensus 231 ~~~~~~~~~~~~~~~~~~ 248 (977)
T PLN02939 231 LKEENMLLKDDIQFLKAE 248 (977)
T ss_pred HHHHhHHHHHHHHHHHHH
Confidence 888888888888877665
No 355
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=54.81 E-value=1.3e+02 Score=25.17 Aligned_cols=69 Identities=19% Similarity=0.320 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017286 251 QYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQQ 326 (374)
Q Consensus 251 qYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~qq 326 (374)
..|..||.-.+.+...+..+..+++.|++....|..|-..-+++.-+++. ..++|..|+..|+.+..-+
T Consensus 3 ~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr-------~~d~l~~e~k~L~~~~~Ks 71 (96)
T PF08647_consen 3 TELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMR-------SKDALDNEMKKLNTQLSKS 71 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHh
Confidence 34566677777777777777777777777777777776666666655555 3566667777777666543
No 356
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=54.69 E-value=2.6e+02 Score=32.95 Aligned_cols=31 Identities=29% Similarity=0.312 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhHHHHHh
Q 017286 257 ERNVQSLQAEGTEVSAELEFLNQQNLILSME 287 (374)
Q Consensus 257 ErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~E 287 (374)
|.+.++||.|+.+|..+|..|.-+..+|..|
T Consensus 324 EERaesLQ~eve~lkEr~deletdlEILKaE 354 (1243)
T KOG0971|consen 324 EERAESLQQEVEALKERVDELETDLEILKAE 354 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678899999999999999998887777665
No 357
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=54.63 E-value=1e+02 Score=30.11 Aligned_cols=48 Identities=15% Similarity=0.085 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQ 300 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q 300 (374)
+..||+.++.-..-...|..+|..|+++...|+-++-++.-+|+.|.+
T Consensus 42 ~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~ 89 (263)
T PRK10803 42 VTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 89 (263)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 346666666655555566666666666666666666665555555544
No 358
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=54.62 E-value=36 Score=26.81 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLN 278 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~ 278 (374)
+.||+.+|..|+.|+.-+...|..-.
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K~ 48 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKKS 48 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999988888776543
No 359
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=54.31 E-value=1.8e+02 Score=34.34 Aligned_cols=78 Identities=22% Similarity=0.273 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHhh-HHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHH-HHHHHH-H--HHHHHHHHHHHHHHHHHh
Q 017286 252 YIAELERNVQSLQAEG-TEVSAELEFLNQQNLILSMENKALKQRLESLAQE-QLIKCL-E--HEVLEREIGRLRVVYQQQ 326 (374)
Q Consensus 252 YI~ELErkVq~LQ~E~-a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~-~~lkda-~--~E~L~~Ei~RLr~l~~qq 326 (374)
-+..||+.|..++.+. .+|..++..++.+...|..|+..|...+..|..+ ..++.. . .|++...-..++.+...+
T Consensus 373 ~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i 452 (1074)
T KOG0250|consen 373 EVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKI 452 (1074)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555 5566666666677777777777777777777654 222222 1 122222225556666666
Q ss_pred hhc
Q 017286 327 QQQ 329 (374)
Q Consensus 327 q~~ 329 (374)
++.
T Consensus 453 ~~~ 455 (1074)
T KOG0250|consen 453 ENI 455 (1074)
T ss_pred HHH
Confidence 664
No 360
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=54.06 E-value=1.2e+02 Score=28.17 Aligned_cols=36 Identities=31% Similarity=0.363 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 290 ALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQ 325 (374)
Q Consensus 290 ~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~q 325 (374)
.+..+|+.|.+-..-+....+.|.++++.|=.-|+.
T Consensus 123 ~~~~kL~~L~~~~~~Q~e~~~~ls~~~~~Ll~~YN~ 158 (174)
T PF07426_consen 123 ELCDKLQKLSQIHLEQQEESEELSEEVQELLQQYNK 158 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666655555555566666666666555544
No 361
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=53.96 E-value=88 Score=33.68 Aligned_cols=26 Identities=31% Similarity=0.451 Sum_probs=14.3
Q ss_pred CCcccCCccCccccCC----------Ccc--hhhhcCC
Q 017286 57 VHHQRTSSESFLMEEQ----------PSW--LDDLLNE 82 (374)
Q Consensus 57 ~hH~RtsSes~l~eeq----------PsW--lDDlL~~ 82 (374)
.|=.|..+.+.+.+.. |.. ..|||.|
T Consensus 57 iHLyk~n~~~s~~~~~~~~mLcilaVP~~mt~~Dll~F 94 (493)
T KOG0804|consen 57 IHLYKKNSHSSLKNASSSTMLCILAVPAYMTSHDLLRF 94 (493)
T ss_pred EEEEecCcccccccCCCCcEEEEEeccccccHHHHHHH
Confidence 4555555555555544 433 4577777
No 362
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=53.90 E-value=1.7e+02 Score=32.39 Aligned_cols=18 Identities=39% Similarity=0.423 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 017286 308 EHEVLEREIGRLRVVYQQ 325 (374)
Q Consensus 308 ~~E~L~~Ei~RLr~l~~q 325 (374)
....|++|++-.+.+|..
T Consensus 371 ~~~~L~R~~~~~~~lY~~ 388 (726)
T PRK09841 371 EVLRLSRDVEAGRAVYLQ 388 (726)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334566666667777765
No 363
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=53.82 E-value=23 Score=28.05 Aligned_cols=30 Identities=33% Similarity=0.492 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHhhHH----HHHHHHHHHHHhH
Q 017286 253 IAELERNVQSLQAEGTE----VSAELEFLNQQNL 282 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~----Ls~~i~~L~~~~~ 282 (374)
|.-||+.|..||.|-+. |-.+|..|++.+.
T Consensus 5 v~s~e~~i~FLq~eH~~tL~~LH~EIe~Lq~~~~ 38 (60)
T PF14916_consen 5 VQSLEKSILFLQQEHAQTLKGLHAEIERLQKRNK 38 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 55678888888887554 4445555544333
No 364
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=53.72 E-value=1.8e+02 Score=30.60 Aligned_cols=98 Identities=29% Similarity=0.282 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHhhHH---HHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Q 017286 252 YIAELERNVQSLQAEGTE---VSAELEFLNQQNLILSMENKALKQRLESLAQEQ------LIKCLEHEVLEREIGRLRVV 322 (374)
Q Consensus 252 YI~ELErkVq~LQ~E~a~---Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~------~lkda~~E~L~~Ei~RLr~l 322 (374)
|..|+.--.++||.|-.- |-.+|..+ ...-..|=..||+.|+.++... .++|. +|.++.==.|+-.+
T Consensus 242 ~~~e~~~~~~~LqEEr~R~erLEeqlNd~---~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi-~E~~Es~qtRiskl 317 (395)
T PF10267_consen 242 YQREYQFILEALQEERYRYERLEEQLNDL---TELHQNEIYNLKQELASMEEKMAYQSYERARDI-WEVMESCQTRISKL 317 (395)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 444555555555555432 22222222 2233466677899888888643 23333 44444433444444
Q ss_pred HHHhhhcCCCCCCCccccCCCCccchhhhhhccc
Q 017286 323 YQQQQQQQPPQKPSSSHRRTSSRDLDSQFANLSL 356 (374)
Q Consensus 323 ~~qqq~~~~q~~~~~~~~~~~s~~~~~qf~~~~~ 356 (374)
=+||+|+.-|.-+ ...++.|++=..|.|+-|
T Consensus 318 E~~~~Qq~~q~e~---~~n~~~r~~l~k~inllL 348 (395)
T PF10267_consen 318 EQQQQQQVVQLEG---TENSRARALLGKLINLLL 348 (395)
T ss_pred HHHHhhhhhhhcc---cccccHHHHHHHHHHHHH
Confidence 4333222222221 224556677777777643
No 365
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=53.51 E-value=2.8e+02 Score=32.70 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHH
Q 017286 254 AELERNVQSLQAEGTEVSAELE 275 (374)
Q Consensus 254 ~ELErkVq~LQ~E~a~Ls~~i~ 275 (374)
.++|...+..+.++..+..+++
T Consensus 624 ~~~e~~l~~~~~~~~~~~~~~~ 645 (1201)
T PF12128_consen 624 EELEKQLKQINKKIEELKREIT 645 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444433333333333
No 366
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=53.46 E-value=54 Score=25.70 Aligned_cols=29 Identities=10% Similarity=0.220 Sum_probs=19.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHhHHHHH
Q 017286 258 RNVQSLQAEGTEVSAELEFLNQQNLILSM 286 (374)
Q Consensus 258 rkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~ 286 (374)
.||..|..++.+|+.+|..|..+...|..
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~ 31 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRA 31 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777777655555544
No 367
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=53.42 E-value=1.8e+02 Score=26.55 Aligned_cols=21 Identities=33% Similarity=0.366 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAE 273 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~ 273 (374)
+++|......|+.|+..|..+
T Consensus 75 ~~~lr~~~e~L~~eie~l~~~ 95 (177)
T PF07798_consen 75 FAELRSENEKLQREIEKLRQE 95 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555554443
No 368
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=53.28 E-value=1.7e+02 Score=26.36 Aligned_cols=21 Identities=24% Similarity=0.183 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 017286 308 EHEVLEREIGRLRVVYQQQQQ 328 (374)
Q Consensus 308 ~~E~L~~Ei~RLr~l~~qqq~ 328 (374)
..+.+..+|+||++...+|.+
T Consensus 112 ~~~~~~~ki~~Le~~i~~~~~ 132 (146)
T PF08702_consen 112 ILRSNRQKIQRLEQDIDQQER 132 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 467888999999999988776
No 369
>PLN02678 seryl-tRNA synthetase
Probab=53.17 E-value=85 Score=33.28 Aligned_cols=44 Identities=23% Similarity=0.271 Sum_probs=19.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHH---HHhHHHHHhhHHHHHHHHHHHH
Q 017286 257 ERNVQSLQAEGTEVSAELEFLN---QQNLILSMENKALKQRLESLAQ 300 (374)
Q Consensus 257 ErkVq~LQ~E~a~Ls~~i~~L~---~~~~~L~~EN~~LK~rL~aL~q 300 (374)
-.+++.|+.|...++.+|..+. .+...|..|=++||++|..|+.
T Consensus 46 ~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~ 92 (448)
T PLN02678 46 QFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEA 92 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444322 1223444444455555555443
No 370
>PHA03155 hypothetical protein; Provisional
Probab=53.07 E-value=1.1e+02 Score=27.23 Aligned_cols=23 Identities=43% Similarity=0.486 Sum_probs=16.9
Q ss_pred HHHHHHhHHHHHhhHHHHHHHHH
Q 017286 275 EFLNQQNLILSMENKALKQRLES 297 (374)
Q Consensus 275 ~~L~~~~~~L~~EN~~LK~rL~a 297 (374)
..|..+...|.+||++||.+|..
T Consensus 11 EeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 11 EELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 44445555679999999999854
No 371
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=52.90 E-value=1.8e+02 Score=26.43 Aligned_cols=62 Identities=16% Similarity=0.123 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHH---HHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 252 YIAELERNVQSLQAEGTEVSA---ELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLE 313 (374)
Q Consensus 252 YI~ELErkVq~LQ~E~a~Ls~---~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~ 313 (374)
-+..|+..|...+.++..|.. -+..|+.+...|..+|...+...++-..+..+..++..+|.
T Consensus 28 e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~~~ai~~al~ 92 (155)
T PF06810_consen 28 ERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQMKKDSAIKSALK 92 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555 45555556666677777444444333333334444444433
No 372
>PHA02557 22 prohead core protein; Provisional
Probab=52.87 E-value=74 Score=31.94 Aligned_cols=42 Identities=21% Similarity=0.265 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 017286 267 GTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLE 308 (374)
Q Consensus 267 ~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~ 308 (374)
++.|..+|..+++....|-.+|.+|+.+|..+....+|-++-
T Consensus 143 V~em~~~L~E~e~~~~~l~~en~~l~e~i~~~~r~~i~~e~t 184 (271)
T PHA02557 143 VAEMEEELDEMEEELNELFEENVALEEYINEVKREVILSEVT 184 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888888888889999999999999999999988873
No 373
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=52.82 E-value=95 Score=35.28 Aligned_cols=52 Identities=27% Similarity=0.348 Sum_probs=32.8
Q ss_pred HHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 272 AELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVY 323 (374)
Q Consensus 272 ~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~ 323 (374)
.+|--++.....+..++..++.+|..|.-..--++...+.|..||++||.-+
T Consensus 301 ~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rl 352 (775)
T PF10174_consen 301 SELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRL 352 (775)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3334444444455666666677777776666666677777777777777654
No 374
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=52.73 E-value=1.8e+02 Score=30.65 Aligned_cols=46 Identities=20% Similarity=0.277 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 269 EVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRV 321 (374)
Q Consensus 269 ~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~ 321 (374)
.|..-+.++.++...|..+-.+|..+++.++. ..+.|++|+..|-.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 128 EWFQAFDFNGSEIERLLTEDREAERRIRELEK-------QLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhcc
Confidence 34444444444444444444444444444433 34455555555543
No 375
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=52.62 E-value=71 Score=37.55 Aligned_cols=16 Identities=31% Similarity=0.443 Sum_probs=6.7
Q ss_pred HHHHhhHHHHHHHHHH
Q 017286 283 ILSMENKALKQRLESL 298 (374)
Q Consensus 283 ~L~~EN~~LK~rL~aL 298 (374)
.+..++.+|+.+|+.+
T Consensus 188 ~~~~~~~~~~~~~~~~ 203 (1123)
T PRK11448 188 ELEEKQQELEAQLEQL 203 (1123)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 376
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=52.56 E-value=62 Score=32.49 Aligned_cols=7 Identities=0% Similarity=0.439 Sum_probs=3.2
Q ss_pred hhhHHHH
Q 017286 233 ETKRAKQ 239 (374)
Q Consensus 233 DpKRaKR 239 (374)
+|.++++
T Consensus 185 ~~e~v~~ 191 (344)
T PF12777_consen 185 NPEKVRK 191 (344)
T ss_dssp SHHHHHH
T ss_pred CHHHHHH
Confidence 3444444
No 377
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=52.45 E-value=1.2e+02 Score=24.45 Aligned_cols=35 Identities=26% Similarity=0.224 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHH
Q 017286 268 TEVSAELEFLNQQNLILSMENKALKQRLESLAQEQ 302 (374)
Q Consensus 268 a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~ 302 (374)
.+.....+-|+........+|.+|+.++..|.++.
T Consensus 24 ~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv 58 (70)
T PF04899_consen 24 QEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQV 58 (70)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555666677777777776643
No 378
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=52.30 E-value=1.7e+02 Score=25.97 Aligned_cols=69 Identities=20% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHH-------HHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 246 RVRKLQYIAELERNVQSLQAEGTEVSA-------ELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGR 318 (374)
Q Consensus 246 R~RKlqYI~ELErkVq~LQ~E~a~Ls~-------~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~R 318 (374)
|.+++.+...++..+....++...|.. +|..|+.+...+..+=..++.++..+ ++.++.|+.|
T Consensus 112 R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i----------~~~~~~El~~ 181 (218)
T cd07596 112 RADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEI----------SERLKEELKR 181 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHH
Q ss_pred HHHHHH
Q 017286 319 LRVVYQ 324 (374)
Q Consensus 319 Lr~l~~ 324 (374)
+..-..
T Consensus 182 f~~~~~ 187 (218)
T cd07596 182 FHEERA 187 (218)
T ss_pred HHHHHH
No 379
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=52.21 E-value=1.1e+02 Score=27.63 Aligned_cols=41 Identities=27% Similarity=0.172 Sum_probs=30.5
Q ss_pred HHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 276 FLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVY 323 (374)
Q Consensus 276 ~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~ 323 (374)
..++.-..|..||.-||.-|..|+. +.+.=++.|..||.-.
T Consensus 82 aKdETI~~lk~EN~fLKeAl~s~QE-------~y~ed~kTI~~L~~qL 122 (126)
T PF13118_consen 82 AKDETIEALKNENRFLKEALYSMQE-------LYEEDRKTIELLREQL 122 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhHHHHHHHHHHH
Confidence 3445556789999999999988876 5666678888877643
No 380
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=52.18 E-value=1.6e+02 Score=35.23 Aligned_cols=27 Identities=30% Similarity=0.481 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 017286 254 AELERNVQSLQAEGTEVSAELEFLNQQ 280 (374)
Q Consensus 254 ~ELErkVq~LQ~E~a~Ls~~i~~L~~~ 280 (374)
.+||.++..|+.++..+..++++|..+
T Consensus 816 ~~l~~~l~~~~~~~k~~~~~~~~l~~~ 842 (1293)
T KOG0996|consen 816 PELENRLEKLTASVKRLAELIEYLESQ 842 (1293)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433
No 381
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.11 E-value=1.5e+02 Score=32.20 Aligned_cols=80 Identities=24% Similarity=0.259 Sum_probs=45.8
Q ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHhhHHHHHHHHH-----HHHHhH------HHHHh------hHHHHHHH
Q 017286 240 QFAQRSRVRKL-------QYIAELERNVQSLQAEGTEVSAELEF-----LNQQNL------ILSME------NKALKQRL 295 (374)
Q Consensus 240 qSAqRSR~RKl-------qYI~ELErkVq~LQ~E~a~Ls~~i~~-----L~~~~~------~L~~E------N~~LK~rL 295 (374)
+-+.+-+.|=+ .|++.|+.+|..++..+.+|..+..- ++.... .+..| =.+|.+.|
T Consensus 275 E~llklkerl~e~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e~~~IqeleqdL 354 (521)
T KOG1937|consen 275 EKLLKLKERLIEALDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETEDEEIRRIQELEQDL 354 (521)
T ss_pred HHHHHhHHHHHHhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 56666666654 47777777777777766666654332 211111 11111 12344555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 296 ESLAQEQLIKCLEHEVLEREIGRL 319 (374)
Q Consensus 296 ~aL~q~~~lkda~~E~L~~Ei~RL 319 (374)
.++.++..-++.+++.|..|.++|
T Consensus 355 ~a~~eei~~~eel~~~Lrsele~l 378 (521)
T KOG1937|consen 355 EAVDEEIESNEELAEKLRSELEKL 378 (521)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhcC
Confidence 566666666677778888887776
No 382
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=52.09 E-value=1.5e+02 Score=33.65 Aligned_cols=79 Identities=20% Similarity=0.172 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 017286 246 RVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQE----QLIKCLEHEVLEREIGRLRV 321 (374)
Q Consensus 246 R~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~----~~lkda~~E~L~~Ei~RLr~ 321 (374)
=+-|..||.+|......|...++.-+.++..++-.-..|..|-..++++...+.+. ---|-+..+.|..||+.+|.
T Consensus 603 vEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~~~e~~L~~EveK~k~ 682 (786)
T PF05483_consen 603 VENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIESKSISEEELLGEVEKAKL 682 (786)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34567777777777777777777777777777766666666666666655444332 22233466889999999998
Q ss_pred HHH
Q 017286 322 VYQ 324 (374)
Q Consensus 322 l~~ 324 (374)
...
T Consensus 683 ~a~ 685 (786)
T PF05483_consen 683 TAD 685 (786)
T ss_pred HHH
Confidence 654
No 383
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=51.86 E-value=2.1e+02 Score=29.84 Aligned_cols=46 Identities=28% Similarity=0.307 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH----hHHHHHhhHHHHHHHHHHHH
Q 017286 255 ELERNVQSLQAEGTEVSAELEFLNQQ----NLILSMENKALKQRLESLAQ 300 (374)
Q Consensus 255 ELErkVq~LQ~E~a~Ls~~i~~L~~~----~~~L~~EN~~LK~rL~aL~q 300 (374)
+|..+++.|+.|...++.+|..+... ...|..+-++||.+|..|++
T Consensus 41 ~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 90 (418)
T TIGR00414 41 KLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSA 90 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHH
Confidence 44455666777777777777664322 22344444444444444443
No 384
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=51.79 E-value=1.5e+02 Score=25.19 Aligned_cols=46 Identities=22% Similarity=0.298 Sum_probs=22.5
Q ss_pred HHHHHHHHHHH--HHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHH
Q 017286 253 IAELERNVQSL--QAEGTEVSAELEFLNQQNLILSMENKALKQRLESL 298 (374)
Q Consensus 253 I~ELErkVq~L--Q~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL 298 (374)
+..||.+|+.| ..+...|.-+|+.+..+...|...=..+...+..|
T Consensus 51 l~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 51 LQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 44455555555 45555555555555544444444444444444333
No 385
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=51.67 E-value=1.1e+02 Score=30.71 Aligned_cols=60 Identities=23% Similarity=0.250 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHHHHHhHHHHHhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 266 EGTEVSAELEFLNQQNLILSMENKALKQRLE-------SLAQEQLIKCLEHEVLEREIGRLRVVYQQ 325 (374)
Q Consensus 266 E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~-------aL~q~~~lkda~~E~L~~Ei~RLr~l~~q 325 (374)
--.++..+|..+......|.-||..+|.+-+ .|..+....+-..+.+++-|++|..|...
T Consensus 238 ~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRa 304 (309)
T PF09728_consen 238 VFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRA 304 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566777777777788888888877654 45555556666677777778888777665
No 386
>PRK12705 hypothetical protein; Provisional
Probab=51.67 E-value=2.9e+02 Score=30.01 Aligned_cols=46 Identities=17% Similarity=0.213 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESL 298 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL 298 (374)
-..|+++...|......|..+-..|.++...|.....++..+|+.+
T Consensus 90 e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~Le~i 135 (508)
T PRK12705 90 EEQLDARAEKLDNLENQLEEREKALSARELELEELEKQLDNELYRV 135 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555544444444444433333333334433
No 387
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=51.54 E-value=1.1e+02 Score=25.59 Aligned_cols=33 Identities=33% Similarity=0.426 Sum_probs=17.0
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 281 NLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLR 320 (374)
Q Consensus 281 ~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr 320 (374)
...+..+-..|+.+|+.++. .|+.|..+|..+|
T Consensus 75 ~~~~~~~~~~L~~~l~~l~~-------eN~~L~~~i~~~r 107 (109)
T PF03980_consen 75 APYKKKEREQLNARLQELEE-------ENEALAEEIQEQR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhh
Confidence 33344444444444444443 5666666666655
No 388
>PRK00106 hypothetical protein; Provisional
Probab=51.49 E-value=3.6e+02 Score=29.49 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 017286 244 RSRVRKLQYIAELERNVQSLQAE 266 (374)
Q Consensus 244 RSR~RKlqYI~ELErkVq~LQ~E 266 (374)
..+..+.++..+.|..+...+.|
T Consensus 65 EAke~~ke~~lEaeeEi~~~R~E 87 (535)
T PRK00106 65 ESKALKKELLLEAKEEARKYREE 87 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555554444444443
No 389
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=51.26 E-value=1.8e+02 Score=31.00 Aligned_cols=60 Identities=15% Similarity=0.142 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHH
Q 017286 244 RSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQL 303 (374)
Q Consensus 244 RSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~ 303 (374)
+-=.++-+-|.+-..+-+.|+.++..+..+|..+.++......++.+++.+|+.+.....
T Consensus 45 ~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~ 104 (420)
T COG4942 45 KEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLN 104 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHH
Confidence 333344455666677778888888888888888888888888899999999988876543
No 390
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=51.13 E-value=1.4e+02 Score=33.81 Aligned_cols=45 Identities=18% Similarity=0.132 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHH
Q 017286 255 ELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLA 299 (374)
Q Consensus 255 ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~ 299 (374)
++|+=+..|+.+...+..+...+.+....+.....+|+.+.+.++
T Consensus 517 ~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~ 561 (782)
T PRK00409 517 KLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQ 561 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444344444444444443333
No 391
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=50.97 E-value=77 Score=31.55 Aligned_cols=20 Identities=5% Similarity=-0.115 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 017286 306 CLEHEVLEREIGRLRVVYQQ 325 (374)
Q Consensus 306 da~~E~L~~Ei~RLr~l~~q 325 (374)
.+..+.|++|++--+.+|..
T Consensus 277 ~~~~~~L~re~~~a~~~y~~ 296 (362)
T TIGR01010 277 TADYQRLVLQNELAQQQLKA 296 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34567788888877777764
No 392
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=50.91 E-value=1.6e+02 Score=32.30 Aligned_cols=20 Identities=20% Similarity=0.464 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 017286 306 CLEHEVLEREIGRLRVVYQQ 325 (374)
Q Consensus 306 da~~E~L~~Ei~RLr~l~~q 325 (374)
+.....|++|++-.+.+|..
T Consensus 375 ~~e~~~L~Re~~~~~~~Y~~ 394 (754)
T TIGR01005 375 QVDLDALQRDAAAKRQLYES 394 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45667888998888888877
No 393
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=50.86 E-value=1.1e+02 Score=24.22 Aligned_cols=38 Identities=24% Similarity=0.261 Sum_probs=19.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 283 ILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLR 320 (374)
Q Consensus 283 ~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr 320 (374)
.....|-.+..+|+..+..-.=-....+.|++|++.||
T Consensus 22 kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 22 KVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566677777776666533322333444444444443
No 394
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=50.81 E-value=40 Score=27.16 Aligned_cols=32 Identities=25% Similarity=0.397 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHH
Q 017286 252 YIAELERNVQSLQAEGTEVSAELEFLNQQNLI 283 (374)
Q Consensus 252 YI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~ 283 (374)
.+.+|+.++..|+.++..|..++..+..+...
T Consensus 63 ~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~ 94 (106)
T PF01920_consen 63 AIEELEERIEKLEKEIKKLEKQLKYLEKKLKE 94 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666665555555444333
No 395
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=50.49 E-value=12 Score=34.42 Aligned_cols=69 Identities=26% Similarity=0.285 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQQQQ 328 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~qqq~ 328 (374)
+..|...+..|..+-..|..+|..|.+++..|.-|...-..+| +-.+.....|..||.+|+.+...-+.
T Consensus 10 ~~~l~~~L~~l~~erqkl~~qv~rL~qEN~~Lr~el~~tq~~l-------q~se~~~~~Lpee~~~Lqfl~~~~r~ 78 (181)
T PF09311_consen 10 MRALQQHLQSLEAERQKLRAQVRRLCQENDWLRGELANTQQKL-------QESEQEVAQLPEEVKHLQFLVSIKRE 78 (181)
T ss_dssp HHHHHHHHHHHHHCCHHHHT--------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhhhhhhcCcchHHHHHHHHHhccc
Confidence 4556666777777777777777777666666655554444444 33344566788889999888776444
No 396
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=50.19 E-value=1.2e+02 Score=31.46 Aligned_cols=65 Identities=15% Similarity=0.101 Sum_probs=48.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 260 VQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQ 325 (374)
Q Consensus 260 Vq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~q 325 (374)
|..+|.....+...|+.-...+..|.-+|.+|.+++..|..+-..++-+.+-+..-++ |-.-|.+
T Consensus 111 ~~~fqvtL~diqktla~~~~~n~klre~NieL~eKlkeL~eQy~~re~hidk~~e~ke-l~~ql~~ 175 (391)
T KOG1850|consen 111 VEQFQVTLKDIQKTLAEGRSKNDKLREDNIELSEKLKELGEQYEEREKHIDKQIQKKE-LWEQLGK 175 (391)
T ss_pred HHHHHhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhH
Confidence 3445555556666666666778899999999999999999988888888888777777 4333333
No 397
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=50.01 E-value=1.1e+02 Score=36.28 Aligned_cols=23 Identities=17% Similarity=0.163 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 017286 304 IKCLEHEVLEREIGRLRVVYQQQ 326 (374)
Q Consensus 304 lkda~~E~L~~Ei~RLr~l~~qq 326 (374)
+.....+.++.+|+.|+....++
T Consensus 212 l~~~~~~~l~~~~~~Lq~~in~k 234 (1109)
T PRK10929 212 LAKKRSQQLDAYLQALRNQLNSQ 234 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444555555544443
No 398
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=49.95 E-value=86 Score=34.66 Aligned_cols=7 Identities=0% Similarity=0.069 Sum_probs=3.2
Q ss_pred hhhhHHH
Q 017286 232 TETKRAK 238 (374)
Q Consensus 232 ~DpKRaK 238 (374)
.||.+|.
T Consensus 237 ~dP~~Aa 243 (726)
T PRK09841 237 DDPQLIT 243 (726)
T ss_pred CCHHHHH
Confidence 4455543
No 399
>PTZ00007 (NAP-L) nucleosome assembly protein -L; Provisional
Probab=49.94 E-value=21 Score=36.60 Aligned_cols=66 Identities=15% Similarity=0.110 Sum_probs=50.5
Q ss_pred HHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017286 263 LQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQQQQ 328 (374)
Q Consensus 263 LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~qqq~ 328 (374)
-..+.+.+...|..+......|..-....+.+|.+|..-+.-.+.+.+.+.+||.+|+.-|..+-+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~i~~Lp~~~~~rv~aL~~lQ~e~~~le~ef~~ev~~LE~kY~~~~~ 76 (337)
T PTZ00007 11 PMEDESDIIEGLDSIELDDEKLSHLTDEQRETLKKLQLLQKEFDDLEVEYNAELRKLRSKYEDLYN 76 (337)
T ss_pred CccccchhhhhhhhcccccchhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344556666667666666666667777788999999877777788899999999999988877644
No 400
>PRK00846 hypothetical protein; Provisional
Probab=49.62 E-value=1e+02 Score=25.48 Aligned_cols=21 Identities=29% Similarity=0.327 Sum_probs=9.1
Q ss_pred HHHHhhHHHHHHHHHHHHHhH
Q 017286 262 SLQAEGTEVSAELEFLNQQNL 282 (374)
Q Consensus 262 ~LQ~E~a~Ls~~i~~L~~~~~ 282 (374)
.|+.-+..|-.+|++.+..-.
T Consensus 10 ~le~Ri~~LE~rlAfQe~tIe 30 (77)
T PRK00846 10 ALEARLVELETRLSFQEQALT 30 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444555444333
No 401
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=49.59 E-value=35 Score=27.03 Aligned_cols=12 Identities=42% Similarity=0.385 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHH
Q 017286 311 VLEREIGRLRVV 322 (374)
Q Consensus 311 ~L~~Ei~RLr~l 322 (374)
.|.+||+|||..
T Consensus 25 ~LH~EIe~Lq~~ 36 (60)
T PF14916_consen 25 GLHAEIERLQKR 36 (60)
T ss_pred HHHHHHHHHHHh
Confidence 467788888763
No 402
>PHA03161 hypothetical protein; Provisional
Probab=49.54 E-value=1.6e+02 Score=27.27 Aligned_cols=66 Identities=20% Similarity=0.155 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 246 RVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRV 321 (374)
Q Consensus 246 R~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~ 321 (374)
+.+++....+|+.+|..|.+++.+...+|+.|-. =|..=-.++++|... -+-+.+.|.-|+++|..
T Consensus 49 ~~~~~~~~~~i~~~v~~l~~~I~~k~kE~~~L~~-------fd~kkl~~~E~L~dr---v~eLkeel~~ELe~l~~ 114 (150)
T PHA03161 49 KHENLKKQKSIEGMLQAVDLSIQEKKKELSLLKA-------FDRHKLSAAEDLQDK---ILELKEDIHFEIEALNH 114 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------cCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhc
Confidence 3455556678888888888888888888888743 122111223333221 12246677778887764
No 403
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=49.43 E-value=1.5e+02 Score=33.45 Aligned_cols=44 Identities=25% Similarity=0.242 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHH
Q 017286 255 ELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESL 298 (374)
Q Consensus 255 ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL 298 (374)
++|.-+..|+.+..++..+...+.+....+.....+|+.+++.|
T Consensus 512 ~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l 555 (771)
T TIGR01069 512 EINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEEL 555 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444433333333333333333343333333
No 404
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=49.22 E-value=2.7e+02 Score=31.24 Aligned_cols=41 Identities=27% Similarity=0.393 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHH
Q 017286 254 AELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQR 294 (374)
Q Consensus 254 ~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~r 294 (374)
.+++++++.|+.+......+|..|+++...|..+..+|+..
T Consensus 223 ~~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~ 263 (670)
T KOG0239|consen 223 ADLRRNIKPLEGLESTIKKKIQALQQELEELKAELKELNDQ 263 (670)
T ss_pred hhHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444333333333
No 405
>PF08336 P4Ha_N: Prolyl 4-Hydroxylase alpha-subunit, N-terminal region; InterPro: IPR013547 The members found in this entry are eukaryotic proteins, and include all three isoforms of the prolyl 4-hydroxylase alpha subunit. This enzyme (1.14.11.2 from EC) is important in the post-translational modification of collagen, as it catalyses the formation of 4-hydroxyproline. In vertebrates, the complete enzyme is an alpha2-beta2 tetramer; the beta-subunit is identical to protein disulphide isomerase [, , , ]. The function of the N-terminal region featured in this family does not seem to be known. ; GO: 0004656 procollagen-proline 4-dioxygenase activity, 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0055114 oxidation-reduction process, 0005783 endoplasmic reticulum
Probab=49.16 E-value=1.3e+02 Score=25.98 Aligned_cols=28 Identities=29% Similarity=0.360 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 017286 251 QYIAELERNVQSLQAEGTEVSAELEFLN 278 (374)
Q Consensus 251 qYI~ELErkVq~LQ~E~a~Ls~~i~~L~ 278 (374)
.||.+||.+++.|+.-...+..+.....
T Consensus 22 ~Yi~~~~~kl~~l~~~~~~~~~~~~~~~ 49 (134)
T PF08336_consen 22 NYIEELQEKLDTLKRFLDEMKREHEKAK 49 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4777777777777666666666555443
No 406
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=49.06 E-value=2.1e+02 Score=33.80 Aligned_cols=55 Identities=20% Similarity=0.228 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHH
Q 017286 249 KLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQL 303 (374)
Q Consensus 249 KlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~ 303 (374)
+..-|.+||.+|+.++.++..|..........+..|..+--.||.+|+.-.++..
T Consensus 446 ~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~ 500 (1041)
T KOG0243|consen 446 MAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELE 500 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456899999999999999999999998888888888888888888877666543
No 407
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=49.04 E-value=1.3e+02 Score=33.03 Aligned_cols=72 Identities=19% Similarity=0.233 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 017286 250 LQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQE---QLIKCLEHEVLEREIGRLRV 321 (374)
Q Consensus 250 lqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~---~~lkda~~E~L~~Ei~RLr~ 321 (374)
.+-|.++|.+|..|...+...-.++..|+........+=..++..|+.++.+ -+++.+-+..|.+|++.|-.
T Consensus 22 i~~l~~s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq~~N~k~L~~eL~~Ll~ 96 (701)
T PF09763_consen 22 IHSLLESEKQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNNGLQVQSANQKLLLNELENLLD 96 (701)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHH
Confidence 5667888888888888888888888888888887788888888888888866 45555667777777776654
No 408
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=49.00 E-value=1.5e+02 Score=29.48 Aligned_cols=41 Identities=17% Similarity=0.227 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017286 287 ENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQQQ 327 (374)
Q Consensus 287 EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~qqq 327 (374)
.+...+..++..+.+.....+.-+.+++++..++.-+.+.+
T Consensus 138 ~g~is~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 178 (370)
T PRK11578 138 TQAVSQQDLDTAATELAVKQAQIGTIDAQIKRNQASLDTAK 178 (370)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455555555555555555666777776666655533
No 409
>PRK14011 prefoldin subunit alpha; Provisional
Probab=48.78 E-value=83 Score=28.50 Aligned_cols=42 Identities=26% Similarity=0.400 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHH
Q 017286 256 LERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQ 300 (374)
Q Consensus 256 LErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q 300 (374)
|++||+.|+.....|...|..+......|. ..|..+++.+++
T Consensus 93 ~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~---~~L~~k~~~~~~ 134 (144)
T PRK14011 93 FKKSVEELDKTKKEGNKKIEELNKEITKLR---KELEKRAQAIEQ 134 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 445555555555555554444443333332 224444444443
No 410
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=48.52 E-value=92 Score=37.38 Aligned_cols=73 Identities=18% Similarity=0.293 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH----------hhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 253 IAELERNVQSLQA----------EGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVV 322 (374)
Q Consensus 253 I~ELErkVq~LQ~----------E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l 322 (374)
+.++|+||+.++. +++.|...+..|.++...++..=.++..+|..+.++.-+.-..-|.|.+|..-|-.+
T Consensus 1203 f~~me~kl~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~ 1282 (1758)
T KOG0994|consen 1203 FLDMEEKLEEIRAILSAPSVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTT 1282 (1758)
T ss_pred HHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHH
Q ss_pred HHH
Q 017286 323 YQQ 325 (374)
Q Consensus 323 ~~q 325 (374)
|++
T Consensus 1283 ~ke 1285 (1758)
T KOG0994|consen 1283 YKE 1285 (1758)
T ss_pred HHH
No 411
>COG3166 PilN Tfp pilus assembly protein PilN [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=48.32 E-value=86 Score=30.06 Aligned_cols=69 Identities=17% Similarity=0.069 Sum_probs=29.9
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHH
Q 017286 231 DTETKRAKQQFAQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQ 300 (374)
Q Consensus 231 ~~DpKRaKRqSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q 300 (374)
.+.|=|..|.-+.|.+.=-+-+..-|=.-.-.+. ...-+..+++..+.....|+.|+..|..+++.+.+
T Consensus 8 NlLpwr~~r~~~~~~~f~~~~~~~~l~~~~~~~~-~~~~~~~~~~~q~~~~~~L~~e~~~l~~~~aei~~ 76 (206)
T COG3166 8 NLLPWRVERRKQARLQFWLLLGGAVLLGIAALAL-GGLLQDRQIAEQQQRNALLTTEIALLDAEIAEIQQ 76 (206)
T ss_pred CcchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-hHHhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777765444444444433333322111111 11111113444444455555555555555554443
No 412
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=48.31 E-value=1.8e+02 Score=28.99 Aligned_cols=62 Identities=23% Similarity=0.200 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHH
Q 017286 240 QFAQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQE 301 (374)
Q Consensus 240 qSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~ 301 (374)
+--+.-+.-=+..+.+||.++..+|.+...|..+.+.|......|--|-..||.|+..|+-.
T Consensus 145 ~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 145 EELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence 34444444455566777777777777777777777777777777777777888888777654
No 413
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=48.28 E-value=99 Score=33.75 Aligned_cols=64 Identities=23% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHhHHHHHhhHHHHHHHHHHHHH-HHHHHHH
Q 017286 245 SRVRKLQYIAELERNVQSLQAEGTEVSA---ELEFLNQQNLILSMENKALKQRLESLAQE-QLIKCLE 308 (374)
Q Consensus 245 SR~RKlqYI~ELErkVq~LQ~E~a~Ls~---~i~~L~~~~~~L~~EN~~LK~rL~aL~q~-~~lkda~ 308 (374)
+.++|.+|-.||-+.-+.|-.-.+.++. +|.-.+++-.++..+|+.++..++.||.+ ++++|++
T Consensus 40 ~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~i~d~l 107 (604)
T KOG3564|consen 40 FEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQLIKDML 107 (604)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
No 414
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=48.27 E-value=48 Score=32.81 Aligned_cols=46 Identities=30% Similarity=0.257 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHH
Q 017286 246 RVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRL 295 (374)
Q Consensus 246 R~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL 295 (374)
..-++.+..+|+++-+.|..+++.+...... ...|..||..||.-|
T Consensus 61 ~~~~~~~~~~~~~en~~Lk~~l~~~~~~~~~----~~~l~~EN~~Lr~lL 106 (284)
T COG1792 61 VLEFLKSLKDLALENEELKKELAELEQLLEE----VESLEEENKRLKELL 106 (284)
T ss_pred HHHHHHHhHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 3345566666666666666665555443333 345777777777654
No 415
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=48.17 E-value=1.3e+02 Score=29.12 Aligned_cols=16 Identities=25% Similarity=0.165 Sum_probs=6.3
Q ss_pred HHHHhhHHHHHHHHHH
Q 017286 262 SLQAEGTEVSAELEFL 277 (374)
Q Consensus 262 ~LQ~E~a~Ls~~i~~L 277 (374)
.++.+...+..++..+
T Consensus 94 ~~~~~~~~~~~~~~~~ 109 (327)
T TIGR02971 94 KLFKDVAAQQATLNRL 109 (327)
T ss_pred hhhhhHHHHHHHHHHH
Confidence 3333444444433333
No 416
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=48.08 E-value=2.7e+02 Score=27.02 Aligned_cols=38 Identities=24% Similarity=0.148 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhh
Q 017286 251 QYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMEN 288 (374)
Q Consensus 251 qYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN 288 (374)
..|++||..+++|+..-.....++..|+.....+..+.
T Consensus 68 ~~le~Le~el~~l~~~~~~~~~~~~~lq~~~~~~~~~~ 105 (256)
T PF14932_consen 68 EDLEALEEELEALQEYKELYEQLRNKLQQLDSSLSQEL 105 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555554444444444444444333333333
No 417
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=48.02 E-value=2.7e+02 Score=26.99 Aligned_cols=71 Identities=21% Similarity=0.243 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHH-HHHhHHH----HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 255 ELERNVQSLQAEGTEVSAELEFL-NQQNLIL----SMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQ 325 (374)
Q Consensus 255 ELErkVq~LQ~E~a~Ls~~i~~L-~~~~~~L----~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~q 325 (374)
.||+++..++.....+..+-... +.-+..| -.+-..|...+..+.++....+..-+.|++.|.+|..-+.+
T Consensus 56 ~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e 131 (225)
T COG1842 56 QLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAE 131 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555554433221 1111111 12223333444444444444444555556665555554443
No 418
>PHA03162 hypothetical protein; Provisional
Probab=47.92 E-value=1.4e+02 Score=27.28 Aligned_cols=21 Identities=43% Similarity=0.515 Sum_probs=15.6
Q ss_pred HHHHHHhHHHHHhhHHHHHHH
Q 017286 275 EFLNQQNLILSMENKALKQRL 295 (374)
Q Consensus 275 ~~L~~~~~~L~~EN~~LK~rL 295 (374)
+.|..+...|.+||++||.+|
T Consensus 16 EeLaaeL~kLqmENK~LKkkl 36 (135)
T PHA03162 16 EDLAAEIAKLQLENKALKKKI 36 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444555799999999999
No 419
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=47.72 E-value=2e+02 Score=34.54 Aligned_cols=65 Identities=22% Similarity=0.204 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHH-HHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 255 ELERNVQSLQAEGTEVSAELEFLN-QQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRL 319 (374)
Q Consensus 255 ELErkVq~LQ~E~a~Ls~~i~~L~-~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RL 319 (374)
++|.-...|+.++..|..+.+.|+ ++...+..++++..+++.-.+.++.--.++...|++|.+-+
T Consensus 462 ~~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~ 527 (1317)
T KOG0612|consen 462 ELEEMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDA 527 (1317)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443 23444444444444444444444443334444444444433
No 420
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=47.69 E-value=1.2e+02 Score=23.73 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHH
Q 017286 254 AELERNVQSLQAEGTEVSAELE 275 (374)
Q Consensus 254 ~ELErkVq~LQ~E~a~Ls~~i~ 275 (374)
..++.++..|+.|+..|..++.
T Consensus 34 ~~~~~~~~~l~~en~~L~~ei~ 55 (85)
T TIGR02209 34 QKLQLEIDKLQKEWRDLQLEVA 55 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 421
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=47.55 E-value=3.2e+02 Score=28.72 Aligned_cols=44 Identities=32% Similarity=0.331 Sum_probs=30.5
Q ss_pred HHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 274 LEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIG 317 (374)
Q Consensus 274 i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~ 317 (374)
...|+.-...+..||..|..+|+++.|++-=|+-+...|.+|+.
T Consensus 129 ~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELa 172 (401)
T PF06785_consen 129 IQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELA 172 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHH
Confidence 33444555567788888888888888888777766666655543
No 422
>PRK10698 phage shock protein PspA; Provisional
Probab=47.47 E-value=2.6e+02 Score=26.70 Aligned_cols=70 Identities=20% Similarity=0.280 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH-HhHHHH----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 255 ELERNVQSLQAEGTEVSAELEFLNQ-QNLILS----MENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQ 324 (374)
Q Consensus 255 ELErkVq~LQ~E~a~Ls~~i~~L~~-~~~~L~----~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~ 324 (374)
.||+++..++.++..+..+-...-+ -...|- .+......++..|+.+..-.....+.|+..+.+|+.-+.
T Consensus 56 ~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~ 130 (222)
T PRK10698 56 QLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLS 130 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555544443332211 111111 223334455566666655555566666666666665443
No 423
>PHA02109 hypothetical protein
Probab=47.28 E-value=46 Score=31.93 Aligned_cols=30 Identities=30% Similarity=0.405 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 017286 248 RKLQYIAELERNVQSLQAEGTEVSAELEFL 277 (374)
Q Consensus 248 RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L 277 (374)
-||..|.+||.++++|-.|.+.|..+|--+
T Consensus 190 ~~L~~I~~L~~ki~~LS~E~~Q~~~Ki~N~ 219 (233)
T PHA02109 190 DKLKQISELTIKLEALSDEACQVKHKILNL 219 (233)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777666666555544433
No 424
>PRK00295 hypothetical protein; Provisional
Probab=47.18 E-value=1.1e+02 Score=24.19 Aligned_cols=18 Identities=22% Similarity=0.224 Sum_probs=8.4
Q ss_pred hHHHHHHHHHHHHHhHHH
Q 017286 267 GTEVSAELEFLNQQNLIL 284 (374)
Q Consensus 267 ~a~Ls~~i~~L~~~~~~L 284 (374)
+..|-.+|++.+.....|
T Consensus 7 i~~LE~kla~qE~tie~L 24 (68)
T PRK00295 7 VTELESRQAFQDDTIQAL 24 (68)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444555554444444
No 425
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=47.08 E-value=56 Score=25.07 Aligned_cols=31 Identities=45% Similarity=0.621 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 017286 289 KALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQQQQQ 329 (374)
Q Consensus 289 ~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~qqq~~ 329 (374)
.+|.+||++|. -.++.||+.||..|++-.|+
T Consensus 11 ~eL~~rl~~LD----------~~ME~Eieelr~RY~~KRqP 41 (49)
T PF11629_consen 11 EELQQRLASLD----------PEMEQEIEELRQRYQAKRQP 41 (49)
T ss_dssp HHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC----------HHHHHHHHHHHHHHHHhhcc
Confidence 46777776654 46789999999999996664
No 426
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=47.03 E-value=2.3e+02 Score=26.82 Aligned_cols=17 Identities=18% Similarity=0.317 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 017286 309 HEVLEREIGRLRVVYQQ 325 (374)
Q Consensus 309 ~E~L~~Ei~RLr~l~~q 325 (374)
.+.+..+|+-|+.+...
T Consensus 194 ~~~l~~~l~~Lq~~ln~ 210 (240)
T PF12795_consen 194 IQRLQQQLQALQNLLNQ 210 (240)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 427
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=46.71 E-value=2.7e+02 Score=26.60 Aligned_cols=49 Identities=31% Similarity=0.302 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQE 301 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~ 301 (374)
|.++...-+.|..|...|..++..|+..+..|...-..++.+|+.|+++
T Consensus 44 id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~q 92 (251)
T PF11932_consen 44 IDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQ 92 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444555555555555554444444444444444444444443
No 428
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=46.58 E-value=38 Score=26.83 Aligned_cols=16 Identities=25% Similarity=0.167 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 017286 309 HEVLEREIGRLRVVYQ 324 (374)
Q Consensus 309 ~E~L~~Ei~RLr~l~~ 324 (374)
+..|+.|-..||+..-
T Consensus 30 n~~Le~EN~~Lk~~~~ 45 (59)
T PF01166_consen 30 NSQLEEENNLLKQNAS 45 (59)
T ss_dssp HHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhcCC
Confidence 4445555555555433
No 429
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=46.53 E-value=2.4e+02 Score=29.58 Aligned_cols=53 Identities=21% Similarity=0.023 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHH-HHHHHHHH
Q 017286 256 LERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQ-EQLIKCLE 308 (374)
Q Consensus 256 LErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q-~~~lkda~ 308 (374)
|=..|.+|.-+.-++-++|+.-.+++..++.|=..+|.-+..|.. .+.+|+++
T Consensus 145 l~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l 198 (405)
T KOG2010|consen 145 LIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGL 198 (405)
T ss_pred eeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334678888888888888888888888888887777777777763 24445443
No 430
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=46.53 E-value=3.2e+02 Score=31.90 Aligned_cols=49 Identities=18% Similarity=0.208 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHH
Q 017286 252 YIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQ 300 (374)
Q Consensus 252 YI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q 300 (374)
-++|+|++....++....|...++.|.+.+..|-..|...-.+++.-++
T Consensus 411 ~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~ 459 (980)
T KOG0980|consen 411 LVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQ 459 (980)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788999999999988888888888887777777766666666554433
No 431
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=46.50 E-value=3.3e+02 Score=27.68 Aligned_cols=66 Identities=20% Similarity=0.294 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017286 252 YIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQQQ 327 (374)
Q Consensus 252 YI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~qqq 327 (374)
|-.|||..++.|++.+..|-. .+..|++|.-.+|.+++.-.- ++ .-+.+.|+.+.-.++.+-.|++
T Consensus 46 ~EaelesqL~q~etrnrdl~t-------~nqrl~~E~e~~Kek~e~q~~--q~-y~q~s~Leddlsqt~aikeql~ 111 (333)
T KOG1853|consen 46 IEAELESQLDQLETRNRDLET-------RNQRLTTEQERNKEKQEDQRV--QF-YQQESQLEDDLSQTHAIKEQLR 111 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--HH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444433333 333345555555554432211 11 1134556666666666655544
No 432
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=46.16 E-value=1.7e+02 Score=25.83 Aligned_cols=67 Identities=25% Similarity=0.241 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 252 YIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQ 325 (374)
Q Consensus 252 YI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~q 325 (374)
++.+|..++..|+.-..+...+|..+. ..+.+|-.|+=.+.....+.....-+|..|-+.|+.-+..
T Consensus 52 ~l~~i~~~l~~L~~~~~~~~~rl~~~r-------~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~L~~~le~ 118 (141)
T PF13874_consen 52 RLKEINDKLEELQKHDLETSARLEEAR-------RRHQELSHRLLRVLRKQEILRNRGYALSPEEEELRKRLEA 118 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 344555555555555555555555554 4444444554444333333333333455555555554433
No 433
>PRK14140 heat shock protein GrpE; Provisional
Probab=45.84 E-value=1.5e+02 Score=28.13 Aligned_cols=29 Identities=17% Similarity=0.216 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 017286 252 YIAELERNVQSLQAEGTEVSAELEFLNQQ 280 (374)
Q Consensus 252 YI~ELErkVq~LQ~E~a~Ls~~i~~L~~~ 280 (374)
.|.+|+.++..|+.++..|..++..+..+
T Consensus 38 ~~~~l~~~i~~l~~ei~elkd~~lR~~Ae 66 (191)
T PRK14140 38 LLDEEQAKIAELEAKLDELEERYLRLQAD 66 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666666666666655554433
No 434
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=45.76 E-value=2.4e+02 Score=25.81 Aligned_cols=59 Identities=22% Similarity=0.241 Sum_probs=26.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q 017286 260 VQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQE--QLIKCLEHEVLEREIGRLRV 321 (374)
Q Consensus 260 Vq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~--~~lkda~~E~L~~Ei~RLr~ 321 (374)
|..++.|+..+..++..+.++....+ ..+|..++....+ .-|+.++.+.+...|+.-+.
T Consensus 165 ~~~~~~ei~~~~~~~~~~~~~~~~is---~~~k~E~~rf~~~k~~d~k~~l~~~~~~~i~~~~~ 225 (236)
T PF09325_consen 165 VEQAENEIEEAERRVEQAKDEFEEIS---ENIKKELERFEKEKVKDFKSMLEEYAESQIEYQKK 225 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444433332 2244444444433 33455555555555544433
No 435
>PRK04863 mukB cell division protein MukB; Provisional
Probab=45.69 E-value=4.5e+02 Score=32.31 Aligned_cols=17 Identities=24% Similarity=0.331 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHhhHH
Q 017286 253 IAELERNVQSLQAEGTE 269 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~ 269 (374)
+.||+.++..|+.+...
T Consensus 316 L~ELe~rL~kLEkQaEk 332 (1486)
T PRK04863 316 LAELNEAESDLEQDYQA 332 (1486)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555444433
No 436
>PF14661 HAUS6_N: HAUS augmin-like complex subunit 6 N-terminus
Probab=45.41 E-value=2.6e+02 Score=26.82 Aligned_cols=11 Identities=27% Similarity=0.588 Sum_probs=7.9
Q ss_pred HHHHHHHHHHH
Q 017286 312 LEREIGRLRVV 322 (374)
Q Consensus 312 L~~Ei~RLr~l 322 (374)
+..+|+.+|.+
T Consensus 233 ~~~~~~kvr~~ 243 (247)
T PF14661_consen 233 LQEKIQKVREL 243 (247)
T ss_pred hHHHHHHHHHH
Confidence 77777777764
No 437
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=45.34 E-value=3.6e+02 Score=27.71 Aligned_cols=26 Identities=15% Similarity=0.109 Sum_probs=10.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhH
Q 017286 257 ERNVQSLQAEGTEVSAELEFLNQQNL 282 (374)
Q Consensus 257 ErkVq~LQ~E~a~Ls~~i~~L~~~~~ 282 (374)
..+...|+.|+..|..+|..++.+..
T Consensus 78 re~Nk~L~~Ev~~Lrqkl~E~qGD~K 103 (319)
T PF09789_consen 78 REQNKKLKEEVEELRQKLNEAQGDIK 103 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHH
Confidence 33344444444444444444433333
No 438
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=45.07 E-value=3.2e+02 Score=32.33 Aligned_cols=87 Identities=26% Similarity=0.291 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhhHHHHHHHHHHHHHhH-----------------HHHHhhHHHHH
Q 017286 237 AKQQFAQRSRVRKLQYIAELER------NVQSLQAEGTEVSAELEFLNQQNL-----------------ILSMENKALKQ 293 (374)
Q Consensus 237 aKRqSAqRSR~RKlqYI~ELEr------kVq~LQ~E~a~Ls~~i~~L~~~~~-----------------~L~~EN~~LK~ 293 (374)
++.+..++-+.-+.+|-.||.. .|..|.+++..|..+|....+... .++.+...|+.
T Consensus 744 ~~~~~~~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~ 823 (1201)
T PF12128_consen 744 AKQEAKEQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDKVDELREEKPELEE 823 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHH
Confidence 3345555555555555555542 455555555555555544432211 12224555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 294 RLESLAQEQLIKCLEHEVLEREIGRLRVVY 323 (374)
Q Consensus 294 rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~ 323 (374)
++..++++..-.+...+.+.+++++.+.-+
T Consensus 824 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l 853 (1201)
T PF12128_consen 824 QLRDLEQELQELEQELNQLQKEVKQRRKEL 853 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555554443333444444444444433
No 439
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=44.90 E-value=70 Score=32.78 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=13.9
Q ss_pred HHHHHHHHHhHHHHHhhHHHHHHHHHH
Q 017286 272 AELEFLNQQNLILSMENKALKQRLESL 298 (374)
Q Consensus 272 ~~i~~L~~~~~~L~~EN~~LK~rL~aL 298 (374)
+=|.+|+..-..|.+.|++|-+.|++|
T Consensus 312 EYVKCLENRVAVLENQNKaLIEELKtL 338 (348)
T KOG3584|consen 312 EYVKCLENRVAVLENQNKALIEELKTL 338 (348)
T ss_pred HHHHHHHhHHHHHhcccHHHHHHHHHH
Confidence 345555555555555555554444443
No 440
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=44.85 E-value=69 Score=31.12 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=18.8
Q ss_pred HHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHH
Q 017286 263 LQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQ 300 (374)
Q Consensus 263 LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q 300 (374)
|+.|+.++.+++.-|..+......+=..+..+..+|..
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~K 186 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKK 186 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666666555554444444444444444444444
No 441
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=44.82 E-value=2.3e+02 Score=27.22 Aligned_cols=60 Identities=25% Similarity=0.325 Sum_probs=27.2
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHH
Q 017286 240 QFAQRSRVRKL-QYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLA 299 (374)
Q Consensus 240 qSAqRSR~RKl-qYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~ 299 (374)
.++.+.++-.+ .-+..|+..|+.|+.+..........+......+...=..|...|..+.
T Consensus 40 ~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~ 100 (264)
T PF06008_consen 40 LNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQ 100 (264)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444443333 1255555555555555555555554444444333333344444444443
No 442
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.63 E-value=2e+02 Score=32.13 Aligned_cols=63 Identities=29% Similarity=0.380 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhH-------HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 256 LERNVQSLQAEGTEVSAELEFLNQQNL-------ILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQ 325 (374)
Q Consensus 256 LErkVq~LQ~E~a~Ls~~i~~L~~~~~-------~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~q 325 (374)
.|..|+.|+.|+.-|..+++...++.. .|-.|...||++++.|+ ++.+.++.|+..++..+-|
T Consensus 6 aeq~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEle-------aeyd~~R~Eldqtkeal~q 75 (772)
T KOG0999|consen 6 AEQEVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELE-------AEYDLARTELDQTKEALGQ 75 (772)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888877765543 34456666677666664 5889999999999988876
No 443
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=44.39 E-value=2.2e+02 Score=28.05 Aligned_cols=72 Identities=13% Similarity=0.113 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 240 QFAQRSRVRKLQYIA----ELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLERE 315 (374)
Q Consensus 240 qSAqRSR~RKlqYI~----ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~E 315 (374)
+|+--.-+||.-.+. .++++|++|+.+..+|..+|+.|......-..-| .-.++.+-...+.|
T Consensus 170 eSsvAfGmRKALqae~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~-------------~E~r~ieEkk~~ee 236 (259)
T KOG4001|consen 170 ESSVAFGMRKALQAENEKTRATTEWKVLEDKKKELELKIAQLKKKLETDEIRS-------------EEEREIEEKKMKEE 236 (259)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhh-------------HHHHHHHHHHHHHH
Confidence 666666777765443 4667777777777777666666543332222222 22334445566778
Q ss_pred HHHHHHHHH
Q 017286 316 IGRLRVVYQ 324 (374)
Q Consensus 316 i~RLr~l~~ 324 (374)
|++|+.--.
T Consensus 237 i~fLk~tN~ 245 (259)
T KOG4001|consen 237 IEFLKETNR 245 (259)
T ss_pred HHHHHHHHH
Confidence 888876433
No 444
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=44.38 E-value=3.5e+02 Score=27.42 Aligned_cols=55 Identities=13% Similarity=0.135 Sum_probs=33.2
Q ss_pred chhhhHHHH----------HHHHHHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHH
Q 017286 231 DTETKRAKQ----------QFAQRSRVRKL-QYIAELERNVQSLQAEGTEVSAELEFLNQQNLILS 285 (374)
Q Consensus 231 ~~DpKRaKR----------qSAqRSR~RKl-qYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~ 285 (374)
..||++|.+ +...+-|.+.. +=+.-|+.++..++.+......+|..+.+++..+.
T Consensus 140 ~~dp~~A~~i~n~~~~~y~~~~~~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~ 205 (444)
T TIGR03017 140 GVDPRFAATVANAFAQAYIDTNIELKVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVS 205 (444)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 368888875 11112222222 23456777777777777777777777777665554
No 445
>PRK14160 heat shock protein GrpE; Provisional
Probab=44.27 E-value=2e+02 Score=27.84 Aligned_cols=44 Identities=27% Similarity=0.351 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLE 296 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~ 296 (374)
+..|+..+..|+.++..|..++..|..+...+.+|---+|.|.+
T Consensus 56 ~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~ 99 (211)
T PRK14160 56 IEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTA 99 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33566666666666666776666666666666676666666654
No 446
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=44.25 E-value=1.4e+02 Score=24.19 Aligned_cols=45 Identities=24% Similarity=0.322 Sum_probs=34.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHH
Q 017286 257 ERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQE 301 (374)
Q Consensus 257 ErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~ 301 (374)
+++-+..+..-+.|...++...++...|.+.+..|-.++..|..+
T Consensus 20 ~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~q 64 (70)
T PF04899_consen 20 EKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQ 64 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566777777777777777788888888888888888887764
No 447
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=44.15 E-value=2.5e+02 Score=28.25 Aligned_cols=67 Identities=22% Similarity=0.164 Sum_probs=27.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017286 258 RNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLA-QEQLIKCLEHEVLEREIGRLRVVYQQQ 326 (374)
Q Consensus 258 rkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~-q~~~lkda~~E~L~~Ei~RLr~l~~qq 326 (374)
++-+.|+.|+..|..+|..+......+...+ .++.....+. ....+++ +.+-|+.|+++.|.--+-+
T Consensus 168 ~rnq~l~~~i~~l~~~l~~~~~~~~~~~~~~-~~~~~~~e~~~r~~~lr~-~~~~l~~el~~aK~~~~~~ 235 (264)
T PF07246_consen 168 RRNQILSHEISNLTNELSNLRNDIDKFQERE-DEKILHEELEARESGLRN-ESKWLEHELSDAKEDMIRL 235 (264)
T ss_pred hHHHHHHHHHHHhhhhHHHhhchhhhhhhhh-hHHHHHHHHHHhHhhhHH-HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555544444422332222 2222222222 2222333 4455555555555444433
No 448
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=44.07 E-value=4e+02 Score=28.73 Aligned_cols=27 Identities=11% Similarity=0.135 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 017286 247 VRKLQYIAELERNVQSLQAEGTEVSAE 273 (374)
Q Consensus 247 ~RKlqYI~ELErkVq~LQ~E~a~Ls~~ 273 (374)
.+=..|+..++...+.|..|...|+..
T Consensus 313 ~~l~~~l~~~~e~~~~l~~Ei~~l~~s 339 (569)
T PRK04778 313 DTLPDFLEHAKEQNKELKEEIDRVKQS 339 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333444444555444444444444443
No 449
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=43.97 E-value=2.1e+02 Score=30.53 Aligned_cols=58 Identities=24% Similarity=0.260 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hhH-HHH-----HHHHHHHHHhHHHHHhhHHHHHHHHHHHH
Q 017286 243 QRSRVRKLQYIAELERNVQSLQA-EGT-EVS-----AELEFLNQQNLILSMENKALKQRLESLAQ 300 (374)
Q Consensus 243 qRSR~RKlqYI~ELErkVq~LQ~-E~a-~Ls-----~~i~~L~~~~~~L~~EN~~LK~rL~aL~q 300 (374)
.-.|.|=...+..-|..|+.|.. ... .+. .++..|.++...+..|+..|..+|+.+.-
T Consensus 238 ~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~~ 302 (511)
T PF09787_consen 238 QQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQIEQLRA 302 (511)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555666666665 222 111 23566666666666666666666644443
No 450
>PF10198 Ada3: Histone acetyltransferases subunit 3; InterPro: IPR019340 This entry is found in Ada3 and homologous proteins which function as part of histone acetyltransferase complexes []. Ada3 is an essential component of the Ada transcriptional coactivator (alteration/deficiency in activation) complex. It plays a key role in linking histone acetyltransferase-containing complexes to p53 (tumour suppressor protein) thereby regulating p53 acetylation, stability and transcriptional activation following DNA damage [].
Probab=43.73 E-value=1.4e+02 Score=26.56 Aligned_cols=53 Identities=30% Similarity=0.347 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHH-HHHH--HHHHHHHHHHH
Q 017286 266 EGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQL-IKCL--EHEVLEREIGR 318 (374)
Q Consensus 266 E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~-lkda--~~E~L~~Ei~R 318 (374)
+--+++++|..||.+....+..|.+-|.+|..+..+.+ .++. .-+.+-+||+.
T Consensus 34 eDDEI~aeLR~lQ~eLr~~~~~N~~rk~rL~~~~~e~ma~QE~~~~l~~lD~~V~~ 89 (131)
T PF10198_consen 34 EDDEISAELRRLQAELREQSAHNNARKKRLLKIAKEEMARQEYKRILDDLDKQVEQ 89 (131)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999888755 3332 23566666654
No 451
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=43.71 E-value=24 Score=26.13 Aligned_cols=30 Identities=20% Similarity=0.238 Sum_probs=9.8
Q ss_pred hhHHHHHHHHHHHHHhHHHHHhhHHHHHHH
Q 017286 266 EGTEVSAELEFLNQQNLILSMENKALKQRL 295 (374)
Q Consensus 266 E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL 295 (374)
.++.|+.+|..|+.....|..||-.|+.++
T Consensus 15 ~Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 15 RNSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ---------------HHHHHHHHHHHHHHH
T ss_pred HhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 455566666666666666667777666654
No 452
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=43.49 E-value=2.6e+02 Score=28.34 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 017286 306 CLEHEVLEREIGRLRVVYQQ 325 (374)
Q Consensus 306 da~~E~L~~Ei~RLr~l~~q 325 (374)
+...+.|++|++--+.+|..
T Consensus 341 ~~~~~~L~r~~~~~~~~y~~ 360 (444)
T TIGR03017 341 RDEMSVLQRDVENAQRAYDA 360 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34577888888888888876
No 453
>PRK11281 hypothetical protein; Provisional
Probab=43.18 E-value=3.2e+02 Score=32.50 Aligned_cols=24 Identities=21% Similarity=0.109 Sum_probs=12.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhH
Q 017286 259 NVQSLQAEGTEVSAELEFLNQQNL 282 (374)
Q Consensus 259 kVq~LQ~E~a~Ls~~i~~L~~~~~ 282 (374)
+...||+|.+.|..++.+++++..
T Consensus 193 ~~~~l~ae~~~l~~~~~~~~~~l~ 216 (1113)
T PRK11281 193 QRVLLQAEQALLNAQNDLQRKSLE 216 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555544433
No 454
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=43.12 E-value=2.6e+02 Score=27.25 Aligned_cols=27 Identities=22% Similarity=0.186 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 017286 247 VRKLQYIAELERNVQSLQAEGTEVSAE 273 (374)
Q Consensus 247 ~RKlqYI~ELErkVq~LQ~E~a~Ls~~ 273 (374)
..|.+||.+||..+..|..-+..|..+
T Consensus 25 ~~k~~~ie~LE~qLk~L~k~~~~lv~~ 51 (234)
T cd07665 25 EEKLQEVECEEQRLRKLHAVVETLVNH 51 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999998877666554
No 455
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=42.80 E-value=1.3e+02 Score=33.88 Aligned_cols=68 Identities=26% Similarity=0.322 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRV 321 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~ 321 (374)
....+.++..|+...+.+..+|..+......|..|+..|+.+|..+...-....+ .+.|..|+.+.|.
T Consensus 575 ~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~~~s~-d~~L~EElk~yK~ 642 (698)
T KOG0978|consen 575 LEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEESGASA-DEVLAEELKEYKE 642 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc-cHHHHHHHHHHHh
Confidence 4444445555555555555555555555555555555555555554433221111 3455555555554
No 456
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=42.75 E-value=1.6e+02 Score=31.76 Aligned_cols=51 Identities=18% Similarity=0.304 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHH
Q 017286 251 QYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQE 301 (374)
Q Consensus 251 qYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~ 301 (374)
+|+.-|-..++....-...+...+..|.+....+..|-.+|.-+|+.|.++
T Consensus 432 rYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~ 482 (507)
T PF05600_consen 432 RYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVER 482 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 466666666666666666677777777777777777777777777777664
No 457
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=42.72 E-value=1e+02 Score=36.16 Aligned_cols=49 Identities=22% Similarity=0.352 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQE 301 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~ 301 (374)
|.|||.+.+.|..|-.++.++-+.+-++.+.|..+=+.|..+|..=.|+
T Consensus 274 i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~ 322 (1200)
T KOG0964|consen 274 IKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQ 322 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhh
Confidence 3344444444444444444443333333444444444444444443333
No 458
>COG3132 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.66 E-value=27 Score=33.47 Aligned_cols=24 Identities=38% Similarity=0.551 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Q 017286 254 AELERNVQSLQAEGTEVSAELEFL 277 (374)
Q Consensus 254 ~ELErkVq~LQ~E~a~Ls~~i~~L 277 (374)
++||.+|..|+.|+++|+++|..|
T Consensus 188 ~dlearv~aLe~eva~L~~rld~l 211 (215)
T COG3132 188 SDLEARVEALEQEVAELRARLDSL 211 (215)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 349999999999999999998876
No 459
>PRK00736 hypothetical protein; Provisional
Probab=42.54 E-value=1.5e+02 Score=23.55 Aligned_cols=18 Identities=17% Similarity=-0.040 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHHHHhHHH
Q 017286 267 GTEVSAELEFLNQQNLIL 284 (374)
Q Consensus 267 ~a~Ls~~i~~L~~~~~~L 284 (374)
+..|-.+|++.+.....|
T Consensus 7 i~~LE~klafqe~tie~L 24 (68)
T PRK00736 7 LTELEIRVAEQEKTIEEL 24 (68)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444445555555444444
No 460
>PRK04325 hypothetical protein; Provisional
Probab=42.21 E-value=1.6e+02 Score=23.78 Aligned_cols=24 Identities=25% Similarity=0.201 Sum_probs=13.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHhHHH
Q 017286 261 QSLQAEGTEVSAELEFLNQQNLIL 284 (374)
Q Consensus 261 q~LQ~E~a~Ls~~i~~L~~~~~~L 284 (374)
+.|+..+..|-.+|++.+.....|
T Consensus 5 ~~~e~Ri~~LE~klAfQE~tIe~L 28 (74)
T PRK04325 5 QEMEDRITELEIQLAFQEDLIDGL 28 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555556666665555544
No 461
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=42.06 E-value=1.7e+02 Score=29.74 Aligned_cols=72 Identities=24% Similarity=0.242 Sum_probs=39.1
Q ss_pred HHHHHHHHHhhHHHHH-----HHHHHHHHhHHHHHhhHHHHHHHHHHH-------H-------HHHHHHHHHHHHHHHHH
Q 017286 257 ERNVQSLQAEGTEVSA-----ELEFLNQQNLILSMENKALKQRLESLA-------Q-------EQLIKCLEHEVLEREIG 317 (374)
Q Consensus 257 ErkVq~LQ~E~a~Ls~-----~i~~L~~~~~~L~~EN~~LK~rL~aL~-------q-------~~~lkda~~E~L~~Ei~ 317 (374)
=.|-.+|+.||.+|-. +|+.|.-+..+-...|.+||..-+.|- . -.+|-.-.-+.-++||+
T Consensus 216 MAKCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq 295 (330)
T KOG2991|consen 216 MAKCRTLQQENEELGHQASEGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQ 295 (330)
T ss_pred HHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHH
Confidence 3455677777777643 455565555555555555554433332 1 12222222334467899
Q ss_pred HHHHHHHHhhh
Q 017286 318 RLRVVYQQQQQ 328 (374)
Q Consensus 318 RLr~l~~qqq~ 328 (374)
||+.-..|+-|
T Consensus 296 ~l~k~~~q~sq 306 (330)
T KOG2991|consen 296 RLKKGLEQVSQ 306 (330)
T ss_pred HHHHHHHHHHH
Confidence 99886665544
No 462
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=41.95 E-value=2.3e+02 Score=24.60 Aligned_cols=67 Identities=27% Similarity=0.287 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 251 QYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRV 321 (374)
Q Consensus 251 qYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~ 321 (374)
.|-.||-.-... -.+...|+.++..++.+...|..+-...+..|...+..- +..-..|++||.-++.
T Consensus 46 ~YE~El~~Ha~~-~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw---~~qk~~le~e~~~~~~ 112 (132)
T PF07926_consen 46 KYERELVKHAED-IKELQQLREELQELQQEINELKAEAESAKAELEESEASW---EEQKEQLEKELSELEQ 112 (132)
T ss_pred HHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHH
Confidence 344444443333 234455555555555555555555555555554443321 1223455555555544
No 463
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=41.89 E-value=1.4e+02 Score=28.02 Aligned_cols=43 Identities=21% Similarity=0.244 Sum_probs=34.9
Q ss_pred HHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 272 AELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLER 314 (374)
Q Consensus 272 ~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~ 314 (374)
.-|.+.++|...|+.+|..|+.+|+.|...+.-.|.+.+.+..
T Consensus 40 ~avSL~erQ~~~LR~~~~~L~~~l~~Li~~Ar~Ne~~~~~~~~ 82 (225)
T PF04340_consen 40 GAVSLVERQLERLRERNRQLEEQLEELIENARENEAIFQRLHR 82 (225)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888999999999999999999999988877766665543
No 464
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.77 E-value=54 Score=32.62 Aligned_cols=28 Identities=29% Similarity=0.453 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQQN 281 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~~~ 281 (374)
+.+||.++..|+.++..|.. +..++.+.
T Consensus 58 ~~~l~~Ql~~l~g~i~~L~~-~~~~q~q~ 85 (262)
T COG1729 58 LTQLEQQLRQLQGKIEELRG-IQELQYQN 85 (262)
T ss_pred cHHHHHHHHHHHhhHHHHHh-HHHHHHHH
Confidence 56777777777777777776 66555444
No 465
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=41.73 E-value=2.7e+02 Score=26.92 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHH
Q 017286 252 YIAELERNVQSLQAEGTEVSAELEFL 277 (374)
Q Consensus 252 YI~ELErkVq~LQ~E~a~Ls~~i~~L 277 (374)
|..+||.....+....++|-..+.-.
T Consensus 82 ~~qeLe~~L~~~~qk~~tl~e~~en~ 107 (203)
T KOG3433|consen 82 VLQELESQLATGSQKKATLGESIENR 107 (203)
T ss_pred HHHHHHHHHHHhhhhHhHHHHHHHHH
Confidence 44555555555555555555544433
No 466
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=41.55 E-value=1e+02 Score=29.37 Aligned_cols=48 Identities=21% Similarity=0.399 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 017286 234 TKRAKQQFAQRSRVRK-------LQYIAELERNVQSLQAEGTEVSAELEFLNQQN 281 (374)
Q Consensus 234 pKRaKRqSAqRSR~RK-------lqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~ 281 (374)
-.|.|..-+++-|+++ +.-|.++|+++..++.|+..+..++..|+++.
T Consensus 138 ~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v 192 (262)
T PF14257_consen 138 EARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDRV 192 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456666666666554 45666777777777777777777777776543
No 467
>PLN02320 seryl-tRNA synthetase
Probab=41.21 E-value=2.2e+02 Score=30.84 Aligned_cols=31 Identities=29% Similarity=0.350 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 017286 250 LQYIAELERNVQSLQAEGTEVSAELEFLNQQ 280 (374)
Q Consensus 250 lqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~ 280 (374)
+..|.+|..+...|+.+...|.++...+.++
T Consensus 92 vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~ 122 (502)
T PLN02320 92 LELVLELYENMLALQKEVERLRAERNAVANK 122 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666555444
No 468
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=41.18 E-value=23 Score=38.11 Aligned_cols=23 Identities=17% Similarity=0.437 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHH
Q 017286 252 YIAELERNVQSLQAEGTEVSAEL 274 (374)
Q Consensus 252 YI~ELErkVq~LQ~E~a~Ls~~i 274 (374)
-|++|+++|+.|+.+...|..+|
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v 54 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRV 54 (489)
T ss_pred HHHHHHHHHHHHHHhhccccccc
Confidence 44555555555444444333333
No 469
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=41.16 E-value=2.4e+02 Score=24.49 Aligned_cols=67 Identities=13% Similarity=0.224 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 254 AELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLR 320 (374)
Q Consensus 254 ~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr 320 (374)
-|.|+++..|+.-...+...|.....-......=|..|-..|.++..+..+-+-.-+...+-|..+|
T Consensus 7 ~e~e~Ri~rLEendk~i~~~L~~Ik~gq~~qe~v~~kld~tlD~i~reRe~dee~k~~n~Knir~~K 73 (98)
T PF11166_consen 7 HEHEWRIRRLEENDKTIFNKLDEIKDGQHDQELVNQKLDRTLDEINREREEDEENKKKNDKNIRDIK 73 (98)
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHhHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3788899999998889988888887666666666777888888877775544333333333343344
No 470
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=41.12 E-value=2.6e+02 Score=33.24 Aligned_cols=75 Identities=15% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKAL---KQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQQQ 327 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~L---K~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~qqq 327 (374)
+.+|+..+..++.+...|..++..++.+...+..+-..| -..+....-+..-+-.....|+.++..|.....++.
T Consensus 824 ~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~ 901 (1311)
T TIGR00606 824 VQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLI 901 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 471
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=40.99 E-value=99 Score=25.55 Aligned_cols=47 Identities=26% Similarity=0.391 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHhHHHHHhhHHHHHHHH
Q 017286 250 LQYIAELERNVQSLQA-----EGTEVSAELEFLNQQNLILSMENKALKQRLE 296 (374)
Q Consensus 250 lqYI~ELErkVq~LQ~-----E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~ 296 (374)
+..+..||..+..==. ...-|..+|..|.+.-..|..||..|+.+|+
T Consensus 48 ~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 48 LKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 472
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=40.82 E-value=2.7e+02 Score=28.35 Aligned_cols=38 Identities=34% Similarity=0.390 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 287 ENKALKQRLESLAQE-QLIKCLEHEVLEREIGRLRVVYQQ 325 (374)
Q Consensus 287 EN~~LK~rL~aL~q~-~~lkda~~E~L~~Ei~RLr~l~~q 325 (374)
|--+|.-.++.|+.. ..||+- -+.|++||++||+++.-
T Consensus 249 e~E~l~ge~~~Le~rN~~LK~q-a~~lerEI~ylKqli~e 287 (294)
T KOG4571|consen 249 EKEALLGELEGLEKRNEELKDQ-ASELEREIRYLKQLILE 287 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 334566667777654 455554 56799999999998753
No 473
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=40.64 E-value=40 Score=30.00 Aligned_cols=27 Identities=41% Similarity=0.439 Sum_probs=18.9
Q ss_pred HHHHHHHhHHHHHhhHHHHHHHHHHHH
Q 017286 274 LEFLNQQNLILSMENKALKQRLESLAQ 300 (374)
Q Consensus 274 i~~L~~~~~~L~~EN~~LK~rL~aL~q 300 (374)
++.|..+...|.+||++||.+|..-..
T Consensus 5 ~EeLaaeL~kLqmENk~LKkkl~~~~~ 31 (118)
T PF05812_consen 5 MEELAAELQKLQMENKALKKKLRQSVG 31 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 344444555679999999999976553
No 474
>PRK11519 tyrosine kinase; Provisional
Probab=40.55 E-value=2.6e+02 Score=31.01 Aligned_cols=20 Identities=30% Similarity=0.258 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 017286 306 CLEHEVLEREIGRLRVVYQQ 325 (374)
Q Consensus 306 da~~E~L~~Ei~RLr~l~~q 325 (374)
+.....|++|++-.+.+|..
T Consensus 369 e~~~~~L~Re~~~~~~lY~~ 388 (719)
T PRK11519 369 QQEIVRLTRDVESGQQVYMQ 388 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34556788888888888866
No 475
>PRK10963 hypothetical protein; Provisional
Probab=40.16 E-value=91 Score=29.53 Aligned_cols=46 Identities=17% Similarity=0.212 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQ 302 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~ 302 (374)
|+=.|++|+.|+.++..|..+++.|-. .-.+|-.|-.++..+.-.-
T Consensus 39 VSL~ErQ~~~LR~r~~~Le~~l~~Li~----~A~~Ne~l~~~~~~l~l~L 84 (223)
T PRK10963 39 VSLVEWQMARQRNHIHVLEEEMTLLME----QAIANEDLFYRLLPLQSRL 84 (223)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 455688888888888888888877732 3456777777776666544
No 476
>PF12507 HCMV_UL139: Human Cytomegalovirus UL139 protein; InterPro: IPR021042 This entry represents eukaryotic and viral proteins of approximately 140 amino acids in length. The UL139 product shares sequence homology with human CD24, a signal transducer modulating B-cell activation responses, and the sequences in the G1c variant of UL139 contained a specific attachment site of prokaryotic membrane lipoprotein lipid [].
Probab=40.05 E-value=85 Score=28.12 Aligned_cols=67 Identities=15% Similarity=0.102 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 255 ELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRV 321 (374)
Q Consensus 255 ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~ 321 (374)
=||||+-.+.-.+..|.++|..|........-+=..++-.++.++....-+|..+++-..|...-..
T Consensus 34 ~L~rKia~~~~~~l~~rs~i~~~~~k~~~~~~~lrs~~geveE~e~~e~~~drfy~ak~~em~ef~~ 100 (121)
T PF12507_consen 34 LLERKIADQNFKILALRSEIEALDAKYHSDSQQLRSCCGEVEEAEEKEEERDRFYEAKRKEMKEFQP 100 (121)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhcchhhhhHhhhccchHHHHHHHhHhhhhhhhhcchHHHHH
Confidence 3566666666677777778888777777777777788888888888777778888877777765544
No 477
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=39.85 E-value=1.2e+02 Score=32.11 Aligned_cols=85 Identities=19% Similarity=0.225 Sum_probs=47.6
Q ss_pred CCcccCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHH
Q 017286 222 NSHAKASASDTETKRAKQQFAQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQE 301 (374)
Q Consensus 222 ~~~~k~~~~~~DpKRaKRqSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~ 301 (374)
.+|.|.- ...||.++..+-++. -+.+||.++..++.....+.. ...+.+++.+++.+..+
T Consensus 149 ~tH~C~m-~~~~p~~vQ~~L~~~-------Rl~~L~~qi~~~~~~l~~~~~------------~~~~~~~~~~~~~l~~~ 208 (475)
T PF10359_consen 149 PTHDCLM-GDNDPRRVQIELIQE-------RLDELEEQIEKHEEKLGELEL------------NPDDPELKSDIEELERH 208 (475)
T ss_pred CceeeEe-ecCCcchHHHHHHHH-------HHHHHHHHHHHHHHhhhcccc------------ccccHHHHHHHHHHHHH
Confidence 3666666 567888876544321 133444444444443333222 45666777777777765
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 017286 302 QLIKCLEHEVLEREIGRLRVVYQQQ 326 (374)
Q Consensus 302 ~~lkda~~E~L~~Ei~RLr~l~~qq 326 (374)
...-..-.+.|+..+++|+......
T Consensus 209 ~~~l~~~~~~l~~~l~~l~~~~~~~ 233 (475)
T PF10359_consen 209 ISSLKERIEFLENMLEDLEDSESSS 233 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccc
Confidence 4333334666777777777655443
No 478
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=39.52 E-value=3.1e+02 Score=25.27 Aligned_cols=28 Identities=32% Similarity=0.322 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhHHHHHhhHHHHHHHHHH
Q 017286 271 SAELEFLNQQNLILSMENKALKQRLESL 298 (374)
Q Consensus 271 s~~i~~L~~~~~~L~~EN~~LK~rL~aL 298 (374)
..+...|..+...|..+|+.|..++.++
T Consensus 88 ~~e~k~L~~~v~~Le~e~r~L~~~~~~~ 115 (158)
T PF09744_consen 88 RQERKDLQSQVEQLEEENRQLELKLKNL 115 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3333344444444444444444444443
No 479
>PLN02320 seryl-tRNA synthetase
Probab=39.46 E-value=2.1e+02 Score=31.06 Aligned_cols=8 Identities=13% Similarity=0.132 Sum_probs=4.6
Q ss_pred chhhhHHH
Q 017286 231 DTETKRAK 238 (374)
Q Consensus 231 ~~DpKRaK 238 (374)
.+|.|-.+
T Consensus 66 mlD~k~ir 73 (502)
T PLN02320 66 AIDFKWIR 73 (502)
T ss_pred ccCHHHHH
Confidence 46666554
No 480
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=39.40 E-value=94 Score=27.67 Aligned_cols=83 Identities=22% Similarity=0.182 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHH--HHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 240 QFAQRSRVRKLQYIAELERNVQSLQA-----EGTEVSAELEFL--NQQNLILSMENKALKQRLESLAQEQLIKCLEHEVL 312 (374)
Q Consensus 240 qSAqRSR~RKlqYI~ELErkVq~LQ~-----E~a~Ls~~i~~L--~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L 312 (374)
+-.+.-=++|.++=.+|..-..+|.. +-+.++-.|..+ ......+. .+|+.|++.|+-..---+-..+.|
T Consensus 20 ~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~---~eL~er~E~Le~ri~tLekQe~~l 96 (119)
T COG1382 20 QQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAV---DELEERKETLELRIKTLEKQEEKL 96 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555543 333444444433 11122221 234444444443333333345555
Q ss_pred HHHHHHHHHHHHH
Q 017286 313 EREIGRLRVVYQQ 325 (374)
Q Consensus 313 ~~Ei~RLr~l~~q 325 (374)
..+++.|+...+.
T Consensus 97 ~e~l~eLq~~i~~ 109 (119)
T COG1382 97 QERLEELQSEIQK 109 (119)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555554443
No 481
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=39.38 E-value=1.6e+02 Score=32.09 Aligned_cols=46 Identities=22% Similarity=0.218 Sum_probs=34.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHH
Q 017286 257 ERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQ 302 (374)
Q Consensus 257 ErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~ 302 (374)
+.|...+..|...|..++...++++..|..|.+.++.+|..|+.+.
T Consensus 433 dSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL 478 (518)
T PF10212_consen 433 DSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDEL 478 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666667777777888888888888888888887777777654
No 482
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=39.29 E-value=1.5e+02 Score=23.32 Aligned_cols=45 Identities=11% Similarity=0.286 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHH
Q 017286 255 ELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLA 299 (374)
Q Consensus 255 ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~ 299 (374)
+++.+|..+++....+..++..|++....+..+=..+-.+|..+.
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~ 47 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIK 47 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555554444444344444444444
No 483
>PF13093 FTA4: Kinetochore complex Fta4 of Sim4 subunit, or CENP-50
Probab=39.28 E-value=56 Score=31.25 Aligned_cols=16 Identities=31% Similarity=0.536 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 017286 309 HEVLEREIGRLRVVYQ 324 (374)
Q Consensus 309 ~E~L~~Ei~RLr~l~~ 324 (374)
+-.|.+||+|+|.|+-
T Consensus 193 ~g~l~~El~rmR~Lla 208 (213)
T PF13093_consen 193 DGELEAELERMRMLLA 208 (213)
T ss_pred CchHHHHHHHHHHHHH
Confidence 5578999999999864
No 484
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=39.27 E-value=2.2e+02 Score=30.57 Aligned_cols=48 Identities=25% Similarity=0.320 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHH
Q 017286 254 AELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQE 301 (374)
Q Consensus 254 ~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~ 301 (374)
++++.++..|+++.+.-..+...+..|+..|.+|-.+++.+++..|-+
T Consensus 9 s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~ 56 (459)
T KOG0288|consen 9 SENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELE 56 (459)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777777777777777777777777666655543
No 485
>PF08287 DASH_Spc19: Spc19; InterPro: IPR013251 Spc19 is a component of the DASH complex. The DASH complex associates with the spindle pole body and is important for spindle and kinetochore integrity during cell division [, ].
Probab=39.12 E-value=86 Score=28.59 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHH
Q 017286 251 QYIAELERNVQSLQAEGTEVSAELEF 276 (374)
Q Consensus 251 qYI~ELErkVq~LQ~E~a~Ls~~i~~ 276 (374)
.+|..|+|+.++|++...-...++..
T Consensus 75 ~~l~kL~Rr~~tL~ak~EL~~~RL~~ 100 (153)
T PF08287_consen 75 KHLEKLQRREETLKAKCELQQGRLSN 100 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45666677766666665544444443
No 486
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=38.91 E-value=2e+02 Score=23.03 Aligned_cols=25 Identities=20% Similarity=0.428 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFL 277 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L 277 (374)
|.+++.+|..|...-..|..+|..+
T Consensus 16 l~~~~~~l~el~~sQ~~L~~~i~~~ 40 (92)
T PF14712_consen 16 LDRLDQQLQELRQSQEELLQQIDRL 40 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555544444444444444
No 487
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=38.86 E-value=6.2e+02 Score=30.57 Aligned_cols=40 Identities=28% Similarity=0.305 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHH
Q 017286 256 LERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRL 295 (374)
Q Consensus 256 LErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL 295 (374)
+..++..++.+...+..++..++++...|..+-..|+.++
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~ 320 (1353)
T TIGR02680 281 LSRDLGRARDELETAREEERELDARTEALEREADALRTRL 320 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333
No 488
>PRK14158 heat shock protein GrpE; Provisional
Probab=38.75 E-value=2.1e+02 Score=27.18 Aligned_cols=23 Identities=22% Similarity=0.108 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHH
Q 017286 255 ELERNVQSLQAEGTEVSAELEFL 277 (374)
Q Consensus 255 ELErkVq~LQ~E~a~Ls~~i~~L 277 (374)
+||.++..|+.++.+|..++-.+
T Consensus 44 ~le~~l~~le~e~~el~d~~lR~ 66 (194)
T PRK14158 44 ELEEALAAKEAEAAANWDKYLRE 66 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333
No 489
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.65 E-value=2.4e+02 Score=32.76 Aligned_cols=39 Identities=21% Similarity=0.266 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 017286 240 QFAQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLN 278 (374)
Q Consensus 240 qSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~ 278 (374)
+....+|++-+..|.+|-.+++.+|..+-.|-.+-..|.
T Consensus 475 e~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~ 513 (1118)
T KOG1029|consen 475 EEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELN 513 (1118)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 555666666666677776666666665555554444443
No 490
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=38.60 E-value=3.3e+02 Score=28.14 Aligned_cols=70 Identities=16% Similarity=0.097 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 252 YIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENK---ALKQRLESLAQEQLIKCLEHEVLEREIGRLRV 321 (374)
Q Consensus 252 YI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~---~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~ 321 (374)
++.+|+..+..++++...|..+++.|+++...+..+=. ....++..|+.+........+.|.+=.+..+.
T Consensus 311 ~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~~ 383 (498)
T TIGR03007 311 VYQQLQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRESAEV 383 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 491
>PRK14143 heat shock protein GrpE; Provisional
Probab=38.59 E-value=2e+02 Score=28.15 Aligned_cols=56 Identities=14% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLE 308 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~ 308 (374)
+.+|+.++..|+.++..|..++-.+..+..-++--...=+.++.....+.++++.|
T Consensus 69 ~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~~a~~~~~~~lL 124 (238)
T PRK14143 69 LAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRLQLKCNTLSEIL 124 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 492
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=38.58 E-value=3.2e+02 Score=26.51 Aligned_cols=64 Identities=23% Similarity=0.249 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 250 LQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLER 314 (374)
Q Consensus 250 lqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~ 314 (374)
+.-+..||..+..++.+...+...+..|..+...|...=.+|+.++..+.....-..+ ++.+.+
T Consensus 91 l~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA-~~~v~~ 154 (225)
T COG1842 91 LEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKA-QEKVNR 154 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
No 493
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=38.56 E-value=5.3e+02 Score=27.75 Aligned_cols=90 Identities=12% Similarity=0.106 Sum_probs=0.0
Q ss_pred hHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 235 KRAKQ-QFAQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLE 313 (374)
Q Consensus 235 KRaKR-qSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~ 313 (374)
+|.++ +--.+-=-+..+-+..+++....++.-.-.+-.+|..++.+-..+..+-.+=-+.|..-+.+.+--|..+..|+
T Consensus 193 ~r~~~ieQ~~~~la~r~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~le 272 (499)
T COG4372 193 LRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLE 272 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH
Q 017286 314 REIGRLRVVYQ 324 (374)
Q Consensus 314 ~Ei~RLr~l~~ 324 (374)
.|+.+|-..|+
T Consensus 273 qeva~le~yyQ 283 (499)
T COG4372 273 QEVAQLEAYYQ 283 (499)
T ss_pred HHHHHHHHHHH
No 494
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=38.15 E-value=1.7e+02 Score=25.01 Aligned_cols=50 Identities=22% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQ 302 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~ 302 (374)
|+=|-.--+.|...+..|..++..+.++...|..+.++++.++..|..+.
T Consensus 68 ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 68 IEYLLHCQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 495
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=38.06 E-value=1.2e+02 Score=27.36 Aligned_cols=53 Identities=13% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHH
Q 017286 251 QYIAELERNV-QSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQL 303 (374)
Q Consensus 251 qYI~ELErkV-q~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~ 303 (374)
+|-.+||+.+ ..+++-+...-..|..|+.-...+..+=..|++.+..+++.++
T Consensus 82 ~~s~~l~~~~~~~~e~~i~~~~~~I~~Lq~~~~~~~~ki~~Le~~i~~~~~~Ck 135 (146)
T PF08702_consen 82 QYSKSLRKMIIYILETKIINQPSNIRVLQNILRSNRQKIQRLEQDIDQQERYCK 135 (146)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
No 496
>PRK14139 heat shock protein GrpE; Provisional
Probab=38.01 E-value=2.2e+02 Score=26.91 Aligned_cols=56 Identities=13% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLE 308 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~ 308 (374)
+.+|+.++..|+.++.+|..++-.+.-+..-.+---..=+.++.....+..+++.|
T Consensus 34 ~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~~~a~~~~~~~LL 89 (185)
T PRK14139 34 APALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAHKFAIESFAESLL 89 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 497
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=38.00 E-value=2.6e+02 Score=27.51 Aligned_cols=65 Identities=12% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 261 QSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQ 325 (374)
Q Consensus 261 q~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~q 325 (374)
..++.+...+.+++..++.+...+...-..-+..++.++.+.....+..+..+++.+|.+.||.+
T Consensus 82 ~~~~~~l~~a~a~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~a~~~l~~a~~~~~R~~~L~~~ 146 (346)
T PRK10476 82 RPYELTVAQAQADLALADAQIMTTQRSVDAERSNAASANEQVERARANAKLATRTLERLEPLLAK 146 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
No 498
>PHA03011 hypothetical protein; Provisional
Probab=38.00 E-value=2.3e+02 Score=25.08 Aligned_cols=56 Identities=20% Similarity=0.083 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 266 EGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRV 321 (374)
Q Consensus 266 E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~ 321 (374)
...++...+..|--+..+|.-|=.-+.-.+..+++--|=.+-+.--|++||.|||.
T Consensus 58 D~Nai~e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~ 113 (120)
T PHA03011 58 DINAIIEILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKE 113 (120)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
No 499
>PRK14162 heat shock protein GrpE; Provisional
Probab=37.82 E-value=2.2e+02 Score=27.07 Aligned_cols=59 Identities=12% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 017286 250 LQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLE 308 (374)
Q Consensus 250 lqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~ 308 (374)
...+.+|+.++..|+.++..|..++-.++.+...+.--...=+..+.....+..+++.|
T Consensus 38 ~~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LL 96 (194)
T PRK14162 38 QNPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQLIKYESQSLAKDVL 96 (194)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 500
>PF14282 FlxA: FlxA-like protein
Probab=37.65 E-value=2.6e+02 Score=23.79 Aligned_cols=64 Identities=20% Similarity=0.275 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHHHHHhHHHHH-hh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 017286 265 AEGTEVSAELEFLNQQNLILSM-EN---KALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQQQQQQPPQKP 335 (374)
Q Consensus 265 ~E~a~Ls~~i~~L~~~~~~L~~-EN---~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~qqq~~~~q~~~ 335 (374)
..+..|..+|..|+++...|.. +. ..-+.+++.|.. ....|...|.+|..--.++.........
T Consensus 19 ~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~-------QI~~LqaQI~qlq~q~~~~~~~~~~~~~ 86 (106)
T PF14282_consen 19 SQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQA-------QIQQLQAQIAQLQSQQAEQQQQKQSSSQ 86 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhcccccc
Done!