Query 017286
Match_columns 374
No_of_seqs 143 out of 211
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 11:59:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017286.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017286hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 99.0 1E-09 3.6E-14 82.2 6.6 43 239-281 10-52 (55)
2 1t2k_D Cyclic-AMP-dependent tr 98.7 7.1E-08 2.4E-12 72.9 8.4 50 239-295 10-59 (61)
3 2dgc_A Protein (GCN4); basic d 98.7 5.3E-08 1.8E-12 74.8 7.2 47 234-280 12-59 (63)
4 1jnm_A Proto-oncogene C-JUN; B 98.6 1E-07 3.6E-12 72.3 7.4 45 239-283 10-54 (62)
5 1gd2_E Transcription factor PA 98.6 1.6E-07 5.4E-12 73.8 7.8 62 231-292 7-70 (70)
6 2wt7_A Proto-oncogene protein 98.6 2.4E-07 8.2E-12 70.7 8.4 46 239-284 11-56 (63)
7 1ci6_A Transcription factor AT 98.1 1.4E-05 4.8E-10 61.1 8.0 46 239-284 11-56 (63)
8 1gu4_A CAAT/enhancer binding p 97.4 0.0006 2E-08 54.5 8.7 52 233-284 14-69 (78)
9 2oqq_A Transcription factor HY 97.4 0.00029 1E-08 50.4 5.6 35 250-284 2-36 (42)
10 1hjb_A Ccaat/enhancer binding 97.4 0.00089 3.1E-08 54.5 8.9 45 233-277 14-62 (87)
11 2wt7_B Transcription factor MA 96.2 0.021 7.2E-07 46.8 8.3 53 239-298 36-88 (90)
12 3a5t_A Transcription factor MA 96.0 0.00072 2.5E-08 57.0 -1.0 42 239-280 46-87 (107)
13 3ol1_A Vimentin; structural ge 95.5 0.27 9.2E-06 41.4 12.9 76 250-325 19-108 (119)
14 2jee_A YIIU; FTSZ, septum, coi 95.0 0.3 1E-05 39.4 10.9 49 252-300 7-55 (81)
15 2jee_A YIIU; FTSZ, septum, coi 94.4 0.43 1.5E-05 38.5 10.4 56 261-316 9-64 (81)
16 3o0z_A RHO-associated protein 94.4 0.36 1.2E-05 43.5 11.1 77 240-326 79-155 (168)
17 3s4r_A Vimentin; alpha-helix, 94.1 0.47 1.6E-05 38.6 10.2 64 258-321 23-91 (93)
18 3hnw_A Uncharacterized protein 93.7 0.44 1.5E-05 41.3 10.0 56 248-303 72-127 (138)
19 2w6a_A ARF GTPase-activating p 93.5 0.14 4.6E-06 39.4 5.6 39 254-292 23-61 (63)
20 3swy_A Cyclic nucleotide-gated 93.1 0.37 1.3E-05 35.1 7.0 44 255-301 2-45 (46)
21 3oja_B Anopheles plasmodium-re 92.1 2.4 8.3E-05 42.3 14.1 75 254-328 505-579 (597)
22 1go4_E MAD1 (mitotic arrest de 91.7 1.2 4E-05 37.1 9.4 18 307-324 75-92 (100)
23 3efg_A Protein SLYX homolog; x 91.4 0.32 1.1E-05 38.5 5.5 51 251-301 14-64 (78)
24 3m9b_A Proteasome-associated A 90.7 0.31 1.1E-05 46.4 5.6 42 273-321 55-96 (251)
25 3cvf_A Homer-3, homer protein 90.6 0.7 2.4E-05 37.0 6.8 40 284-323 18-57 (79)
26 1hjb_A Ccaat/enhancer binding 90.3 2 6.9E-05 34.7 9.4 34 292-325 42-75 (87)
27 3a7p_A Autophagy protein 16; c 90.1 2.2 7.4E-05 38.0 10.1 40 256-295 94-133 (152)
28 3swf_A CGMP-gated cation chann 90.1 0.81 2.8E-05 36.3 6.6 47 254-303 3-49 (74)
29 3swk_A Vimentin; cytoskeleton, 89.6 1.1 3.7E-05 35.9 7.2 71 253-323 2-86 (86)
30 3o0z_A RHO-associated protein 89.5 12 0.00039 33.8 14.5 87 237-325 22-115 (168)
31 2dfs_A Myosin-5A; myosin-V, in 89.0 3 0.0001 46.4 12.6 15 260-274 986-1000(1080)
32 1ci6_A Transcription factor AT 88.9 1.1 3.9E-05 33.8 6.5 29 273-301 24-52 (63)
33 1gu4_A CAAT/enhancer binding p 88.6 1.6 5.5E-05 34.6 7.4 37 275-325 39-75 (78)
34 2dfs_A Myosin-5A; myosin-V, in 88.6 3.5 0.00012 45.9 12.7 41 259-299 978-1018(1080)
35 3oja_B Anopheles plasmodium-re 87.5 6.7 0.00023 39.1 13.0 24 305-328 535-558 (597)
36 2wt7_A Proto-oncogene protein 87.4 4.7 0.00016 30.2 9.0 28 273-300 24-51 (63)
37 2oqq_A Transcription factor HY 87.4 1.7 5.9E-05 31.1 6.1 37 259-295 4-40 (42)
38 1deb_A APC protein, adenomatou 86.7 3 0.0001 31.1 7.3 45 254-298 6-50 (54)
39 3m48_A General control protein 86.6 0.67 2.3E-05 31.7 3.5 26 253-278 2-27 (33)
40 3a7p_A Autophagy protein 16; c 86.5 4 0.00014 36.3 9.4 45 256-300 80-124 (152)
41 1c1g_A Tropomyosin; contractIl 86.4 7.8 0.00027 33.0 11.2 25 253-277 22-46 (284)
42 2oxj_A Hybrid alpha/beta pepti 86.1 1.1 3.9E-05 30.7 4.4 26 253-278 3-28 (34)
43 3vmx_A Voltage-gated hydrogen 85.3 3 0.0001 30.7 6.6 40 279-325 4-43 (48)
44 3cve_A Homer protein homolog 1 85.2 4.1 0.00014 32.1 7.9 43 255-297 4-46 (72)
45 3m48_A General control protein 84.4 0.72 2.5E-05 31.5 2.8 18 308-325 15-32 (33)
46 3m0d_C TNF receptor-associated 84.4 9.2 0.00031 28.9 9.4 30 249-278 4-33 (65)
47 3he5_A Synzip1; heterodimeric 84.2 3.6 0.00012 29.6 6.5 16 307-322 31-46 (49)
48 2j5u_A MREC protein; bacterial 84.1 0.67 2.3E-05 43.4 3.6 42 282-327 22-63 (255)
49 3hnw_A Uncharacterized protein 83.9 7.2 0.00025 33.6 9.7 45 254-298 85-129 (138)
50 1nkp_B MAX protein, MYC proto- 83.4 1.5 5E-05 34.2 4.7 24 250-273 46-69 (83)
51 4etp_A Kinesin-like protein KA 83.0 3.6 0.00012 40.9 8.4 52 270-321 8-59 (403)
52 1c1g_A Tropomyosin; contractIl 82.7 21 0.00072 30.3 15.1 10 289-298 86-95 (284)
53 3tnu_A Keratin, type I cytoske 82.3 8.4 0.00029 32.4 9.4 28 252-279 39-66 (131)
54 3c3g_A Alpha/beta peptide with 82.3 2.1 7.2E-05 29.2 4.4 26 253-278 2-27 (33)
55 3s9g_A Protein hexim1; cyclin 82.0 5.8 0.0002 33.2 7.9 27 245-271 31-57 (104)
56 3mq9_A Bone marrow stromal ant 82.0 20 0.0007 34.9 13.3 75 246-320 385-470 (471)
57 2wt7_B Transcription factor MA 82.0 19 0.00064 29.4 10.8 65 252-324 22-86 (90)
58 3tnu_B Keratin, type II cytosk 81.9 10 0.00035 31.7 9.7 29 252-280 37-65 (129)
59 4ati_A MITF, microphthalmia-as 81.8 0.68 2.3E-05 38.9 2.4 22 282-303 94-115 (118)
60 2w83_C C-JUN-amino-terminal ki 81.7 9.3 0.00032 30.5 8.7 61 258-318 9-76 (77)
61 3c3f_A Alpha/beta peptide with 81.7 2.3 7.7E-05 29.2 4.4 27 253-279 3-29 (34)
62 2oxj_A Hybrid alpha/beta pepti 81.7 2.7 9.3E-05 28.8 4.8 17 308-324 16-32 (34)
63 3a7o_A Autophagy protein 16; c 81.6 4.5 0.00015 32.0 6.7 45 257-301 31-75 (75)
64 2no2_A HIP-I, huntingtin-inter 81.3 14 0.00047 30.7 10.1 60 241-300 19-96 (107)
65 1t2k_D Cyclic-AMP-dependent tr 80.7 11 0.00039 27.7 8.5 28 273-300 23-50 (61)
66 2v66_B Nuclear distribution pr 80.5 21 0.00073 30.0 11.1 28 273-300 36-63 (111)
67 2wq1_A General control protein 80.4 2.7 9.2E-05 28.7 4.4 27 253-279 2-28 (33)
68 4emc_A Monopolin complex subun 79.9 8.9 0.0003 35.2 9.2 37 260-303 22-58 (190)
69 3qh9_A Liprin-beta-2; coiled-c 79.9 16 0.00056 29.3 9.6 59 258-316 19-77 (81)
70 1kd8_B GABH BLL, GCN4 acid bas 79.7 2.8 9.6E-05 29.1 4.4 27 253-279 3-29 (36)
71 3he5_A Synzip1; heterodimeric 79.6 6.3 0.00022 28.3 6.4 21 252-272 4-24 (49)
72 1i84_S Smooth muscle myosin he 79.5 6.3 0.00022 43.9 9.7 41 253-293 859-899 (1184)
73 3cvf_A Homer-3, homer protein 79.2 13 0.00043 29.7 8.8 48 254-301 9-56 (79)
74 1m1j_B Fibrinogen beta chain; 79.1 17 0.00057 37.3 11.9 21 308-328 176-196 (464)
75 3u06_A Protein claret segregat 79.0 5.2 0.00018 40.0 8.0 53 261-320 6-58 (412)
76 3cve_A Homer protein homolog 1 78.9 22 0.00074 27.9 10.6 48 277-324 5-52 (72)
77 2v71_A Nuclear distribution pr 78.3 40 0.0014 30.7 13.3 48 275-325 59-106 (189)
78 1f5n_A Interferon-induced guan 77.9 29 0.00099 36.2 13.5 82 236-322 493-582 (592)
79 1kd8_A GABH AIV, GCN4 acid bas 77.6 2.5 8.5E-05 29.3 3.6 27 253-279 3-29 (36)
80 1uo4_A General control protein 77.6 2.5 8.7E-05 29.0 3.6 27 253-279 3-29 (34)
81 3i00_A HIP-I, huntingtin-inter 77.4 20 0.0007 30.3 10.1 14 251-264 40-53 (120)
82 3mq7_A Bone marrow stromal ant 77.2 4.5 0.00015 34.7 5.9 11 314-324 92-102 (121)
83 3a2a_A Voltage-gated hydrogen 77.1 6.2 0.00021 29.9 6.0 40 279-325 11-50 (58)
84 1deq_A Fibrinogen (alpha chain 76.7 6.5 0.00022 39.5 7.9 51 247-297 109-159 (390)
85 2ocy_A RAB guanine nucleotide 76.7 13 0.00044 33.0 9.0 67 257-325 78-147 (154)
86 2bni_A General control protein 76.3 2.9 9.9E-05 28.7 3.6 27 253-279 3-29 (34)
87 1wlq_A Geminin; coiled-coil; 2 76.2 12 0.0004 30.3 7.8 27 266-292 39-65 (83)
88 3ghg_C Fibrinogen gamma chain; 76.0 27 0.00091 35.3 12.2 77 252-328 39-133 (411)
89 3q8t_A Beclin-1; autophagy, AT 76.0 30 0.001 28.0 10.9 48 253-300 6-53 (96)
90 1zme_C Proline utilization tra 75.8 2 6.7E-05 31.5 3.0 25 251-275 44-68 (70)
91 1go4_E MAD1 (mitotic arrest de 75.8 3.6 0.00012 34.2 4.9 18 281-298 77-94 (100)
92 1jcd_A Major outer membrane li 75.7 9.1 0.00031 28.3 6.5 25 253-277 6-30 (52)
93 3tnu_A Keratin, type I cytoske 75.6 29 0.001 29.1 10.6 26 253-278 47-72 (131)
94 2wvr_A Geminin; DNA replicatio 75.2 11 0.00038 35.0 8.4 28 266-293 116-143 (209)
95 3na7_A HP0958; flagellar bioge 75.1 51 0.0017 30.2 14.7 24 252-275 54-77 (256)
96 1am9_A Srebp-1A, protein (ster 75.0 4 0.00014 32.0 4.8 47 251-297 23-75 (82)
97 3vkg_A Dynein heavy chain, cyt 75.0 26 0.00089 43.6 13.8 68 256-323 2026-2093(3245)
98 3ol1_A Vimentin; structural ge 74.6 25 0.00085 29.3 9.9 61 264-324 19-79 (119)
99 3s4r_A Vimentin; alpha-helix, 74.4 21 0.00073 28.7 9.1 56 260-324 11-66 (93)
100 2dgc_A Protein (GCN4); basic d 74.3 4.2 0.00014 30.7 4.6 14 309-322 46-59 (63)
101 2hy6_A General control protein 74.2 3.5 0.00012 28.3 3.6 27 253-279 3-29 (34)
102 2ocy_A RAB guanine nucleotide 74.0 23 0.00078 31.4 9.9 48 253-300 46-93 (154)
103 2xdj_A Uncharacterized protein 73.9 17 0.00059 28.9 8.3 41 253-293 22-62 (83)
104 3c3g_A Alpha/beta peptide with 73.9 6.4 0.00022 26.8 4.8 28 290-324 4-31 (33)
105 1i84_S Smooth muscle myosin he 73.9 22 0.00076 39.6 12.0 31 252-282 865-895 (1184)
106 1uo4_A General control protein 73.7 3.6 0.00012 28.2 3.6 18 308-325 16-33 (34)
107 1fmh_A General control protein 73.5 6.1 0.00021 26.4 4.6 29 253-281 3-31 (33)
108 2v71_A Nuclear distribution pr 73.4 38 0.0013 30.9 11.4 29 273-301 89-117 (189)
109 4ath_A MITF, microphthalmia-as 73.3 9.4 0.00032 30.8 6.6 44 250-304 38-81 (83)
110 3ghg_A Fibrinogen alpha chain; 73.2 7.3 0.00025 40.7 7.4 44 244-287 103-146 (562)
111 3c3f_A Alpha/beta peptide with 73.1 6.8 0.00023 26.8 4.8 17 308-324 16-32 (34)
112 3tq2_A KE1; parallel three hel 72.8 7.7 0.00026 26.4 5.0 32 267-298 3-34 (36)
113 2xdj_A Uncharacterized protein 72.4 12 0.0004 29.9 7.0 7 257-263 5-11 (83)
114 1wle_A Seryl-tRNA synthetase; 72.3 51 0.0018 33.8 13.4 54 230-283 39-102 (501)
115 1nlw_A MAD protein, MAX dimeri 72.1 5.1 0.00017 31.5 4.7 28 250-277 46-73 (80)
116 2yy0_A C-MYC-binding protein; 71.6 5.2 0.00018 29.4 4.4 29 260-295 21-49 (53)
117 3na7_A HP0958; flagellar bioge 71.6 60 0.002 29.8 12.6 68 251-320 32-103 (256)
118 3tnu_B Keratin, type II cytosk 70.9 45 0.0015 27.8 12.1 27 253-279 45-71 (129)
119 1deb_A APC protein, adenomatou 70.0 22 0.00076 26.4 7.4 44 275-325 6-49 (54)
120 2zxx_A Geminin; coiled-coil, c 69.7 20 0.00067 28.7 7.6 30 266-295 35-64 (79)
121 1jnm_A Proto-oncogene C-JUN; B 69.5 4 0.00014 30.4 3.4 28 273-300 23-50 (62)
122 2er8_A Regulatory protein Leu3 69.5 2.9 9.8E-05 30.9 2.6 23 250-272 48-70 (72)
123 4b4t_K 26S protease regulatory 69.4 6 0.0002 39.6 5.7 55 260-321 37-91 (428)
124 1uii_A Geminin; human, DNA rep 69.1 22 0.00075 28.7 7.8 33 286-325 46-78 (83)
125 2lw1_A ABC transporter ATP-bin 68.2 24 0.00084 27.7 8.0 25 252-276 23-47 (89)
126 2yy0_A C-MYC-binding protein; 67.8 6.7 0.00023 28.9 4.3 20 281-300 21-40 (53)
127 2efr_A General control protein 67.7 42 0.0014 29.6 10.1 16 306-321 139-154 (155)
128 1dip_A Delta-sleep-inducing pe 67.6 4.8 0.00016 32.1 3.6 27 266-292 16-42 (78)
129 2xzr_A Immunoglobulin-binding 67.5 54 0.0018 27.4 10.7 64 261-324 41-107 (114)
130 4gkw_A Spindle assembly abnorm 67.2 62 0.0021 28.5 10.9 18 264-281 59-76 (167)
131 3m91_A Proteasome-associated A 67.2 21 0.00073 26.2 6.8 36 277-319 14-49 (51)
132 1nkp_A C-MYC, MYC proto-oncoge 66.8 11 0.00036 30.0 5.6 16 251-266 52-67 (88)
133 2v4h_A NF-kappa-B essential mo 66.6 59 0.002 27.5 11.1 50 231-280 25-77 (110)
134 3ghg_B Fibrinogen beta chain; 66.5 27 0.00092 35.9 9.8 77 253-329 97-192 (461)
135 1kd8_B GABH BLL, GCN4 acid bas 66.4 13 0.00045 25.8 5.1 16 309-324 17-32 (36)
136 1gd2_E Transcription factor PA 65.5 25 0.00085 27.2 7.3 61 232-301 5-65 (70)
137 2dq0_A Seryl-tRNA synthetase; 64.9 56 0.0019 32.9 11.8 51 250-300 30-83 (455)
138 3u59_A Tropomyosin beta chain; 64.0 55 0.0019 26.3 10.9 51 246-296 18-68 (101)
139 3uux_B Mitochondrial division 64.0 16 0.00056 34.6 7.1 50 251-300 177-226 (242)
140 1wle_A Seryl-tRNA synthetase; 63.6 28 0.00094 35.7 9.4 46 255-300 81-137 (501)
141 3oja_A Leucine-rich immune mol 63.5 37 0.0013 33.2 10.0 19 253-271 369-387 (487)
142 3m9b_A Proteasome-associated A 63.3 8.2 0.00028 36.7 5.0 35 290-325 58-93 (251)
143 3u1c_A Tropomyosin alpha-1 cha 63.3 58 0.002 26.3 13.1 61 257-317 36-96 (101)
144 3swk_A Vimentin; cytoskeleton, 63.3 33 0.0011 27.2 7.9 59 266-324 1-59 (86)
145 2wq1_A General control protein 63.1 15 0.0005 25.1 4.8 15 309-323 16-30 (33)
146 2efr_A General control protein 62.9 77 0.0026 27.9 10.9 36 285-320 76-111 (155)
147 2v66_B Nuclear distribution pr 62.5 69 0.0024 26.9 11.3 49 252-300 36-84 (111)
148 3cl3_D NF-kappa-B essential mo 62.5 17 0.00059 31.5 6.4 42 284-325 53-94 (130)
149 2r2v_A GCN4 leucine zipper; co 62.2 13 0.00043 25.5 4.4 27 253-279 3-29 (34)
150 3qne_A Seryl-tRNA synthetase, 62.2 56 0.0019 33.5 11.3 32 250-281 32-63 (485)
151 2bni_A General control protein 62.0 11 0.00037 25.9 4.0 17 308-324 16-32 (34)
152 2eqb_B RAB guanine nucleotide 61.9 38 0.0013 28.0 8.1 56 251-307 12-67 (97)
153 2hy6_A General control protein 60.8 17 0.00058 24.9 4.8 16 308-323 16-31 (34)
154 3oja_A Leucine-rich immune mol 60.6 1E+02 0.0034 30.1 12.5 9 255-263 385-393 (487)
155 2oa5_A Hypothetical protein BQ 60.4 4 0.00014 34.5 2.1 22 253-274 10-31 (110)
156 1dh3_A Transcription factor CR 60.2 9.6 0.00033 28.0 3.9 27 274-300 24-50 (55)
157 3q8t_A Beclin-1; autophagy, AT 60.0 67 0.0023 25.9 13.3 79 242-320 16-94 (96)
158 1ses_A Seryl-tRNA synthetase; 59.8 73 0.0025 31.6 11.5 31 250-280 27-57 (421)
159 2dq0_A Seryl-tRNA synthetase; 59.8 29 0.00098 35.0 8.6 45 256-300 43-90 (455)
160 2jo8_A Serine/threonine-protei 59.7 16 0.00056 27.0 5.0 25 306-330 20-44 (51)
161 3qne_A Seryl-tRNA synthetase, 58.4 32 0.0011 35.3 8.7 46 255-300 44-92 (485)
162 3iot_A Maltose-binding protein 58.2 6.3 0.00022 37.8 3.4 12 70-81 123-134 (449)
163 2xnx_M M protein, M1-BC1; cell 57.1 3 0.0001 36.9 0.8 41 283-323 91-131 (146)
164 1kd8_A GABH AIV, GCN4 acid bas 56.9 21 0.00072 24.7 4.8 16 308-323 16-31 (36)
165 3t98_B Nucleoporin NUP58/NUP45 56.9 73 0.0025 25.8 9.0 36 290-325 48-83 (93)
166 2e7s_A RAB guanine nucleotide 56.8 13 0.00043 32.5 4.6 33 291-323 101-133 (135)
167 1nkp_B MAX protein, MYC proto- 56.5 10 0.00035 29.4 3.7 6 253-258 21-26 (83)
168 1deq_A Fibrinogen (alpha chain 55.6 67 0.0023 32.3 10.2 12 308-319 142-153 (390)
169 1x79_B RAB GTPase binding effe 55.0 95 0.0033 26.1 10.4 64 258-321 6-73 (112)
170 4b4t_M 26S protease regulatory 54.7 7.9 0.00027 38.9 3.5 9 312-320 65-73 (434)
171 3vem_A Helicase protein MOM1; 54.7 49 0.0017 28.1 7.8 59 235-293 42-105 (115)
172 3efg_A Protein SLYX homolog; x 54.6 48 0.0016 26.0 7.3 21 255-275 11-31 (78)
173 1uii_A Geminin; human, DNA rep 54.3 24 0.00081 28.5 5.5 29 266-294 47-75 (83)
174 3bas_A Myosin heavy chain, str 54.3 78 0.0027 25.0 8.7 45 254-298 38-82 (89)
175 2zvf_A Alanyl-tRNA synthetase; 54.1 40 0.0014 28.5 7.4 48 250-297 6-57 (171)
176 1hwt_C Protein (heme activator 54.0 10 0.00035 28.4 3.3 26 246-271 53-78 (81)
177 3ghg_A Fibrinogen alpha chain; 53.9 1.2E+02 0.0042 31.8 12.1 36 291-326 122-157 (562)
178 1m1j_C Fibrinogen gamma chain; 53.6 1.9E+02 0.0064 29.1 13.3 17 310-326 115-131 (409)
179 4dzn_A Coiled-coil peptide CC- 53.4 23 0.0008 23.6 4.4 13 287-299 17-29 (33)
180 2ve7_C Kinetochore protein NUF 53.3 16 0.00055 34.1 5.2 55 233-301 118-177 (250)
181 3u06_A Protein claret segregat 53.3 40 0.0014 33.6 8.3 33 265-297 3-35 (412)
182 1hlo_A Protein (transcription 53.1 12 0.00042 28.8 3.7 46 251-300 29-78 (80)
183 1joc_A EEA1, early endosomal a 53.1 52 0.0018 27.4 7.8 20 255-274 15-34 (125)
184 2eqb_B RAB guanine nucleotide 53.1 96 0.0033 25.6 11.6 18 255-272 44-61 (97)
185 2xnx_M M protein, M1-BC1; cell 52.5 83 0.0028 27.7 9.2 46 256-301 31-81 (146)
186 3i00_A HIP-I, huntingtin-inter 51.9 1.1E+02 0.0037 25.8 10.6 62 259-323 16-77 (120)
187 3trt_A Vimentin; cytoskeleton, 51.4 75 0.0026 23.9 8.5 9 287-295 57-65 (77)
188 1nkp_A C-MYC, MYC proto-oncoge 51.1 23 0.00077 28.1 5.0 13 308-320 74-86 (88)
189 1m1j_C Fibrinogen gamma chain; 51.1 1.3E+02 0.0045 30.2 11.6 20 306-325 97-116 (409)
190 3nmd_A CGMP dependent protein 51.0 31 0.0011 27.1 5.6 32 291-322 38-69 (72)
191 1l8d_A DNA double-strand break 50.9 91 0.0031 24.7 11.4 32 253-284 12-43 (112)
192 3m0a_A TNF receptor-associated 50.8 71 0.0024 23.5 8.8 27 253-279 7-33 (66)
193 1m1j_B Fibrinogen beta chain; 50.4 1.5E+02 0.0051 30.3 12.1 71 253-324 102-178 (464)
194 2nrj_A HBL B protein; enteroto 50.4 36 0.0012 33.0 7.3 76 246-324 118-193 (346)
195 3oa7_A Head morphogenesis prot 50.2 30 0.001 32.0 6.3 42 260-301 32-73 (206)
196 4etp_A Kinesin-like protein KA 50.1 47 0.0016 32.9 8.2 28 273-300 4-31 (403)
197 2oto_A M protein; helical coil 50.1 1.2E+02 0.0041 25.8 12.1 28 254-281 53-80 (155)
198 2oto_A M protein; helical coil 49.9 1.2E+02 0.0041 25.8 12.2 45 256-300 34-78 (155)
199 3bbp_D GRIP and coiled-coil do 49.8 22 0.00074 28.0 4.5 47 254-300 18-64 (71)
200 2wuj_A Septum site-determining 47.9 17 0.00057 26.8 3.5 26 252-277 28-53 (57)
201 1jcd_A Major outer membrane li 47.5 50 0.0017 24.3 5.9 28 258-285 4-31 (52)
202 2e7s_A RAB guanine nucleotide 47.3 14 0.00049 32.1 3.5 48 259-307 40-87 (135)
203 1m5i_A APC protein; coiled-coi 47.2 1.4E+02 0.0047 25.7 9.6 30 296-325 83-112 (125)
204 3lss_A Seryl-tRNA synthetase; 47.1 1.5E+02 0.0053 30.2 11.6 35 250-284 36-70 (484)
205 3m91_A Proteasome-associated A 46.9 46 0.0016 24.4 5.7 20 255-274 13-32 (51)
206 1uur_A Stata protein, STAT pro 46.3 1.6E+02 0.0054 30.3 11.5 83 237-320 18-117 (473)
207 3he5_B Synzip2; heterodimeric 46.1 45 0.0015 24.2 5.4 14 308-321 32-45 (52)
208 3vp9_A General transcriptional 45.3 1E+02 0.0034 25.2 8.0 16 309-324 70-85 (92)
209 1skn_P DNA-binding domain of S 45.0 7.8 0.00027 31.8 1.4 22 239-260 71-92 (92)
210 3nmd_A CGMP dependent protein 44.9 46 0.0016 26.2 5.7 22 253-274 42-63 (72)
211 1cii_A Colicin IA; bacteriocin 44.7 2.5E+02 0.0084 29.4 12.5 70 231-300 338-412 (602)
212 3viq_B Mating-type switching p 44.5 1.2E+02 0.0042 24.4 8.8 56 254-310 4-59 (85)
213 1p9i_A Cortexillin I/GCN4 hybr 44.5 18 0.00062 23.8 2.8 17 282-298 9-25 (31)
214 3plt_A Sphingolipid long chain 44.2 1.5E+02 0.005 27.9 10.1 56 240-300 104-159 (234)
215 1t6f_A Geminin; coiled-coil, c 44.2 29 0.00098 24.1 3.9 27 266-292 8-34 (37)
216 3a2a_A Voltage-gated hydrogen 44.1 46 0.0016 25.1 5.3 35 257-291 10-44 (58)
217 3vmx_A Voltage-gated hydrogen 43.9 74 0.0025 23.3 6.3 36 257-292 3-38 (48)
218 1zxa_A CGMP-dependent protein 43.8 27 0.00093 27.0 4.2 33 292-324 24-56 (67)
219 1ses_A Seryl-tRNA synthetase; 43.6 39 0.0013 33.6 6.5 22 255-276 39-60 (421)
220 3s9g_A Protein hexim1; cyclin 43.4 1.4E+02 0.0049 24.8 9.9 26 266-291 38-63 (104)
221 3ra3_A P1C; coiled coil domain 42.9 23 0.00078 22.9 3.0 19 283-301 4-22 (28)
222 3qh9_A Liprin-beta-2; coiled-c 42.8 1E+02 0.0035 24.7 7.5 40 281-320 21-60 (81)
223 1fmh_A General control protein 42.4 28 0.00096 23.2 3.5 29 274-302 3-31 (33)
224 3bas_A Myosin heavy chain, str 42.3 1.2E+02 0.0042 23.8 12.5 49 251-299 14-62 (89)
225 1am9_A Srebp-1A, protein (ster 42.2 96 0.0033 24.0 7.3 15 311-325 61-75 (82)
226 3lss_A Seryl-tRNA synthetase; 42.2 81 0.0028 32.3 8.7 24 256-279 49-72 (484)
227 4emc_A Monopolin complex subun 42.1 1.6E+02 0.0055 26.9 9.7 25 256-280 32-56 (190)
228 4h22_A Leucine-rich repeat fli 41.9 78 0.0027 26.4 7.0 15 310-324 68-82 (103)
229 1lq7_A Alpha3W; three helix bu 41.8 17 0.00059 27.5 2.7 58 254-318 5-66 (67)
230 2oa5_A Hypothetical protein BQ 40.6 14 0.00047 31.3 2.3 23 275-297 11-33 (110)
231 2xu6_A MDV1 coiled coil; prote 40.5 51 0.0017 26.0 5.3 44 252-295 22-65 (72)
232 3uux_B Mitochondrial division 40.5 2.4E+02 0.0083 26.6 11.4 55 252-313 164-218 (242)
233 2ve7_A Kinetochore protein HEC 38.5 33 0.0011 32.9 4.9 40 259-301 186-225 (315)
234 3htk_A Structural maintenance 38.1 1.1E+02 0.0037 21.9 7.3 43 255-297 9-51 (60)
235 2ke4_A CDC42-interacting prote 37.9 1.3E+02 0.0044 24.5 7.7 27 252-278 23-49 (98)
236 1uix_A RHO-associated kinase; 37.6 1.5E+02 0.005 23.2 8.0 30 256-285 2-31 (71)
237 3mov_A Lamin-B1; LMNB1, B-type 37.3 1.1E+02 0.0036 24.8 7.0 12 311-322 76-87 (95)
238 2wuj_A Septum site-determining 37.2 25 0.00085 25.9 3.0 26 275-300 30-55 (57)
239 3u59_A Tropomyosin beta chain; 37.1 1.6E+02 0.0054 23.5 14.8 64 253-316 32-95 (101)
240 3he4_A Synzip6; heterodimeric 36.8 36 0.0012 25.0 3.7 30 251-280 17-46 (56)
241 1cii_A Colicin IA; bacteriocin 36.7 3.8E+02 0.013 28.0 12.4 47 256-302 354-400 (602)
242 2dq3_A Seryl-tRNA synthetase; 36.4 29 0.00098 34.6 4.2 32 250-281 29-60 (425)
243 2wvr_A Geminin; DNA replicatio 36.3 48 0.0016 30.8 5.3 33 286-325 115-147 (209)
244 4e61_A Protein BIM1; EB1-like 36.3 74 0.0025 26.6 6.0 18 284-301 23-40 (106)
245 4b4t_K 26S protease regulatory 36.0 34 0.0012 34.1 4.7 44 280-323 36-79 (428)
246 2dq3_A Seryl-tRNA synthetase; 35.4 70 0.0024 31.7 6.8 46 255-300 41-89 (425)
247 3ra3_A P1C; coiled coil domain 35.3 25 0.00087 22.7 2.3 21 256-276 5-25 (28)
248 1s1c_X RHO-associated, coiled- 35.1 1.6E+02 0.0055 23.0 8.0 31 255-285 3-33 (71)
249 4ani_A Protein GRPE; chaperone 35.0 1.3E+02 0.0043 27.8 8.0 24 254-277 62-85 (213)
250 2dnx_A Syntaxin-12; snare, HAB 34.7 2E+02 0.0068 23.9 10.3 46 253-298 30-77 (130)
251 1lrz_A FEMA, factor essential 34.5 1.4E+02 0.0047 29.0 8.7 42 252-301 248-289 (426)
252 3e98_A GAF domain of unknown f 34.4 83 0.0028 29.1 6.8 48 252-303 66-113 (252)
253 2z5i_A TM, general control pro 33.9 67 0.0023 23.4 4.8 20 256-275 10-29 (52)
254 1m1j_A Fibrinogen alpha subuni 33.7 95 0.0032 32.1 7.5 21 308-328 140-160 (491)
255 3azd_A Short alpha-tropomyosin 33.6 25 0.00086 24.0 2.3 29 252-280 5-33 (37)
256 1fxk_A Prefoldin; archaeal pro 33.3 98 0.0034 24.1 6.2 24 254-277 68-91 (107)
257 1wlq_A Geminin; coiled-coil; 2 33.3 60 0.002 26.2 4.8 33 286-325 38-70 (83)
258 2akf_A Coronin-1A; coiled coil 33.1 47 0.0016 22.2 3.4 26 254-279 2-27 (32)
259 1uuj_A Platelet-activating fac 32.9 20 0.00068 29.1 2.0 25 245-269 59-83 (88)
260 2zqm_A Prefoldin beta subunit 32.9 1.2E+02 0.0042 23.8 6.8 43 249-291 68-110 (117)
261 2pnv_A Small conductance calci 32.8 27 0.00092 24.9 2.4 19 255-273 20-38 (43)
262 3htk_A Structural maintenance 32.7 1.3E+02 0.0046 21.4 8.0 49 248-296 9-57 (60)
263 1s1c_X RHO-associated, coiled- 32.7 1.8E+02 0.006 22.7 8.0 21 281-301 8-28 (71)
264 3s84_A Apolipoprotein A-IV; fo 32.5 2.4E+02 0.0082 26.4 9.7 43 281-323 204-247 (273)
265 2j5u_A MREC protein; bacterial 32.3 19 0.00064 33.5 2.0 23 278-300 25-47 (255)
266 2wpq_A Trimeric autotransporte 32.3 2.2E+02 0.0074 23.6 11.4 71 252-322 7-98 (99)
267 3fpp_A Macrolide-specific effl 32.0 98 0.0033 28.4 6.8 33 292-324 113-145 (341)
268 1c94_A Retro-GCN4 leucine zipp 31.9 17 0.00058 24.9 1.2 29 293-321 9-37 (38)
269 1fmh_B General control protein 31.8 67 0.0023 21.4 4.0 20 283-302 12-31 (33)
270 4g1a_A AQ-C16C19 peptide; heli 31.7 23 0.0008 23.5 1.8 25 253-277 2-26 (32)
271 3q0x_A Centriole protein; cent 31.7 1.7E+02 0.0058 27.3 8.3 55 232-287 160-214 (228)
272 1gk6_A Vimentin; intermediate 31.5 1E+02 0.0035 22.6 5.6 41 255-295 4-44 (59)
273 1jad_A PLC-beta, phospholipase 31.5 3.4E+02 0.012 25.7 13.5 65 239-303 82-151 (251)
274 1fxk_C Protein (prefoldin); ar 31.4 1.3E+02 0.0043 24.6 6.8 23 255-277 92-114 (133)
275 3iox_A AGI/II, PA; alpha helix 31.3 4.6E+02 0.016 27.2 13.0 48 250-297 12-59 (497)
276 1m1j_A Fibrinogen alpha subuni 31.2 4E+02 0.014 27.6 11.5 29 251-279 111-139 (491)
277 3coq_A Regulatory protein GAL4 30.6 39 0.0013 25.4 3.2 22 251-272 45-66 (89)
278 2h7o_A Protein kinase YPKA; YO 30.5 2.5E+02 0.0084 27.2 9.3 55 246-303 110-187 (303)
279 3vkg_A Dynein heavy chain, cyt 30.3 3.9E+02 0.013 33.7 13.1 37 233-269 2010-2053(3245)
280 1dip_A Delta-sleep-inducing pe 30.1 44 0.0015 26.6 3.4 34 290-330 19-52 (78)
281 3he5_B Synzip2; heterodimeric 30.1 1.6E+02 0.0054 21.3 6.8 26 254-279 20-45 (52)
282 1ic2_A Tropomyosin alpha chain 30.1 1.9E+02 0.0064 22.2 9.0 33 269-301 24-56 (81)
283 3q0x_A Centriole protein; cent 29.2 1.9E+02 0.0066 26.9 8.2 37 265-301 171-207 (228)
284 3v86_A De novo design helix; c 29.1 66 0.0023 20.6 3.5 20 255-274 4-23 (27)
285 4dk0_A Putative MACA; alpha-ha 28.6 3.5E+02 0.012 24.9 10.9 19 307-325 129-147 (369)
286 2ve7_C Kinetochore protein NUF 28.5 57 0.002 30.4 4.6 33 283-322 145-177 (250)
287 3fs3_A Nucleosome assembly pro 28.0 1E+02 0.0036 30.5 6.6 40 289-328 49-88 (359)
288 2jmh_A BLO T 5, mite allergen 28.0 2.8E+02 0.0096 23.6 8.4 60 253-318 21-81 (119)
289 1lwu_C Fibrinogen gamma chain; 27.9 95 0.0033 30.2 6.2 13 259-271 6-18 (323)
290 3mq9_A Bone marrow stromal ant 27.7 1.1E+02 0.0039 29.5 6.8 24 290-313 447-470 (471)
291 4dnd_A Syntaxin-10, SYN10; str 27.0 2.7E+02 0.0094 23.4 8.2 17 305-321 110-126 (130)
292 3e98_A GAF domain of unknown f 27.0 1.3E+02 0.0044 27.8 6.7 38 274-311 67-104 (252)
293 2ve7_A Kinetochore protein HEC 26.7 80 0.0027 30.2 5.4 22 280-301 186-207 (315)
294 3mq1_A Mite allergen DER P 5; 26.6 2.7E+02 0.0093 23.2 7.8 60 253-318 6-66 (103)
295 2p0t_A UPF0307 protein pspto_4 26.5 80 0.0027 28.4 5.0 72 245-326 67-145 (176)
296 2cly_A ATP synthase B chain, m 26.4 3.8E+02 0.013 24.6 10.4 66 247-316 111-177 (214)
297 3bbp_D GRIP and coiled-coil do 26.3 85 0.0029 24.6 4.4 15 307-321 50-64 (71)
298 2w6a_A ARF GTPase-activating p 26.3 58 0.002 24.9 3.4 20 252-271 42-61 (63)
299 2p4w_A Transcriptional regulat 26.3 3.4E+02 0.012 23.9 9.5 63 255-323 119-181 (202)
300 1i6z_A BAG-family molecular ch 26.0 3.2E+02 0.011 23.7 9.0 48 250-297 20-70 (135)
301 1qvr_A CLPB protein; coiled co 25.9 6.1E+02 0.021 26.8 12.5 59 240-298 387-463 (854)
302 1g6u_A Domain swapped dimer; d 25.6 1.1E+02 0.0036 21.9 4.4 10 289-298 37-46 (48)
303 3a5t_A Transcription factor MA 25.1 3.9 0.00013 34.3 -3.6 23 272-294 65-87 (107)
304 2q6q_A Spindle POLE BODY compo 25.0 2.5E+02 0.0086 22.0 7.3 46 254-299 6-51 (74)
305 1avy_A Fibritin, gpwac M; bact 24.9 1.4E+02 0.0048 23.5 5.4 15 260-274 10-24 (74)
306 2xv5_A Lamin-A/C; structural p 24.7 2.4E+02 0.0083 21.8 7.5 27 258-284 12-38 (74)
307 2v4h_A NF-kappa-B essential mo 24.7 3.1E+02 0.011 23.0 12.2 13 309-321 85-97 (110)
308 2lw1_A ABC transporter ATP-bin 24.7 2.5E+02 0.0084 21.8 7.1 18 251-268 29-46 (89)
309 3gp4_A Transcriptional regulat 24.4 1.7E+02 0.0057 24.6 6.4 42 250-291 87-128 (142)
310 1pyi_A Protein (pyrimidine pat 24.3 50 0.0017 25.2 2.9 20 251-270 48-67 (96)
311 3kqg_A Langerin, C-type lectin 24.2 81 0.0028 26.2 4.4 16 311-326 27-42 (182)
312 1fmh_B General control protein 24.0 1.5E+02 0.0051 19.7 4.6 28 253-280 3-30 (33)
313 3thf_A Protein shroom; coiled- 24.0 2.4E+02 0.0081 25.8 7.6 32 246-277 14-45 (190)
314 3ra3_B P2F; coiled coil domain 23.8 54 0.0018 21.2 2.4 10 288-297 9-18 (28)
315 1tu3_F RAB GTPase binding effe 23.7 79 0.0027 25.2 3.8 62 251-319 12-76 (79)
316 2c5k_T Syntaxin TLG1, T-snare 23.6 1.1E+02 0.0037 24.7 4.8 30 251-280 36-65 (95)
317 3mov_A Lamin-B1; LMNB1, B-type 23.5 2.9E+02 0.0099 22.2 11.0 14 263-276 49-62 (95)
318 2p22_A Suppressor protein STP2 23.0 4.1E+02 0.014 23.7 9.2 58 251-308 63-131 (174)
319 1hs7_A Syntaxin VAM3; UP-and-D 22.9 2.2E+02 0.0076 23.1 6.6 10 314-323 78-87 (97)
320 1tu3_F RAB GTPase binding effe 22.7 69 0.0024 25.5 3.4 25 279-303 5-29 (79)
321 3iv1_A Tumor susceptibility ge 22.7 2.9E+02 0.0098 21.9 9.2 51 263-313 16-66 (78)
322 2w83_C C-JUN-amino-terminal ki 22.6 2.9E+02 0.01 21.9 9.4 17 308-324 45-61 (77)
323 1gk4_A Vimentin; intermediate 22.5 2.7E+02 0.0093 21.5 7.1 45 253-297 28-72 (84)
324 3lay_A Zinc resistance-associa 22.5 1.6E+02 0.0054 26.2 6.1 10 316-325 129-138 (175)
325 2f1m_A Acriflavine resistance 22.2 2.8E+02 0.0097 24.5 7.9 13 309-321 114-126 (277)
326 1ic2_A Tropomyosin alpha chain 22.2 2.7E+02 0.0091 21.3 10.1 42 258-299 6-47 (81)
327 2gkw_A TNF receptor-associated 22.1 1.2E+02 0.004 26.3 5.2 23 253-275 2-24 (192)
328 1x8y_A Lamin A/C; structural p 22.1 2.8E+02 0.0097 21.6 7.1 12 311-322 67-78 (86)
329 1x8y_A Lamin A/C; structural p 22.0 2.8E+02 0.0097 21.6 10.7 41 255-295 32-72 (86)
330 3mtu_A Tropomyosin alpha-1 cha 21.9 2.2E+02 0.0074 21.9 6.1 30 253-282 4-33 (75)
331 3he4_A Synzip6; heterodimeric 21.9 49 0.0017 24.3 2.2 28 266-300 18-45 (56)
332 3uo3_A J-type CO-chaperone JAC 21.4 3.6E+02 0.012 23.6 8.2 61 265-328 105-169 (181)
333 2e50_A Protein SET; histone ch 21.3 1.7E+02 0.0058 26.8 6.2 45 284-328 21-65 (225)
334 3tq2_A KE1; parallel three hel 21.1 1.9E+02 0.0064 19.6 4.7 31 289-319 4-34 (36)
335 3swy_A Cyclic nucleotide-gated 21.0 1.5E+02 0.0051 21.3 4.5 28 252-279 6-33 (46)
336 2p22_A Suppressor protein STP2 20.6 4.3E+02 0.015 23.6 8.5 43 277-319 47-89 (174)
337 3f1i_S STAM-1, signal transduc 20.6 3.2E+02 0.011 21.6 6.9 42 252-296 28-69 (77)
338 3pbf_A Pulmonary surfactant-as 20.5 69 0.0024 25.6 3.1 24 253-276 4-27 (148)
339 3u1c_A Tropomyosin alpha-1 cha 20.1 3.4E+02 0.012 21.7 15.2 80 240-319 12-91 (101)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=98.96 E-value=1e-09 Score=82.21 Aligned_cols=43 Identities=28% Similarity=0.415 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 017286 239 QQFAQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQN 281 (374)
Q Consensus 239 RqSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~ 281 (374)
|+||+|||.||++||.+||.+|..|+.|+..|..+|..|++..
T Consensus 10 ResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 10 REAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6999999999999999999999999999999999999987653
No 2
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=98.68 E-value=7.1e-08 Score=72.92 Aligned_cols=50 Identities=28% Similarity=0.418 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHH
Q 017286 239 QQFAQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRL 295 (374)
Q Consensus 239 RqSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL 295 (374)
|++|+|||.||.+|+.+||.+|..|..++..|..+|..|. .|+..||+.|
T Consensus 10 r~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~-------~e~~~Lk~~l 59 (61)
T 1t2k_D 10 RAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLR-------NEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHh
Confidence 5999999999999999999999999999999999999874 4555555543
No 3
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=98.66 E-value=5.3e-08 Score=74.78 Aligned_cols=47 Identities=36% Similarity=0.490 Sum_probs=41.5
Q ss_pred hhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 017286 234 TKRAK-QQFAQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQ 280 (374)
Q Consensus 234 pKRaK-RqSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~ 280 (374)
-||++ |++|+|||.||++||.+||.+|..|+.|+..|..+|..|.++
T Consensus 12 ~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 12 LKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44554 799999999999999999999999999999999988888654
No 4
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=98.60 E-value=1e-07 Score=72.32 Aligned_cols=45 Identities=36% Similarity=0.485 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHH
Q 017286 239 QQFAQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLI 283 (374)
Q Consensus 239 RqSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~ 283 (374)
|.+|+|||.||++||.+||.+|..|+.++..|..+|..|..+...
T Consensus 10 r~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~ 54 (62)
T 1jnm_A 10 RIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQ 54 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999987554433
No 5
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=98.57 E-value=1.6e-07 Score=73.81 Aligned_cols=62 Identities=26% Similarity=0.262 Sum_probs=49.2
Q ss_pred chhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHH
Q 017286 231 DTETKRA--KQQFAQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALK 292 (374)
Q Consensus 231 ~~DpKRa--KRqSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK 292 (374)
....||. .|.+++..|+||.+||.+||.+|..|+.++..|..+...|..+...|..||..||
T Consensus 7 ~~~~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 7 EPSSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred chHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3345553 3688888899999999999999999999998887777777777777777777664
No 6
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=98.56 E-value=2.4e-07 Score=70.69 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHH
Q 017286 239 QQFAQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLIL 284 (374)
Q Consensus 239 RqSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L 284 (374)
|++|+|+|.||++||.+||.+|..|+.++..|..+|..|..+...|
T Consensus 11 R~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 11 KMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999998775544443
No 7
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=98.06 E-value=1.4e-05 Score=61.09 Aligned_cols=46 Identities=17% Similarity=0.187 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHH
Q 017286 239 QQFAQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLIL 284 (374)
Q Consensus 239 RqSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L 284 (374)
|.+|+|+|.||.+++.+||.+|+.|+.+|..|..+|+.|+.+...|
T Consensus 11 r~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 11 KTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999998875444333
No 8
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=97.44 E-value=0.0006 Score=54.47 Aligned_cols=52 Identities=19% Similarity=0.221 Sum_probs=42.2
Q ss_pred hhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHH
Q 017286 233 ETKRAKQ----QFAQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLIL 284 (374)
Q Consensus 233 DpKRaKR----qSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L 284 (374)
|..+.|| +.|+|||+++.+-..+++.+|..|+.||..|..+|..|..+...|
T Consensus 14 ~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~L 69 (78)
T 1gu4_A 14 DEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTL 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555 999999999999999999999999999988888888764444333
No 9
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=97.39 E-value=0.00029 Score=50.43 Aligned_cols=35 Identities=31% Similarity=0.562 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHH
Q 017286 250 LQYIAELERNVQSLQAEGTEVSAELEFLNQQNLIL 284 (374)
Q Consensus 250 lqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L 284 (374)
.+|+.|||.+|+.|+..+++|..+|+.|+.++.+|
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervstLq~EN~mL 36 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLSTLQNENQML 36 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 37999999999999999999999999986554444
No 10
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=97.35 E-value=0.00089 Score=54.50 Aligned_cols=45 Identities=20% Similarity=0.237 Sum_probs=37.2
Q ss_pred hhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 017286 233 ETKRAKQ----QFAQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFL 277 (374)
Q Consensus 233 DpKRaKR----qSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L 277 (374)
|-.+.|| +.|+|||.++.+-..+++.+|..|+.||..|..+|..|
T Consensus 14 ~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L 62 (87)
T 1hjb_A 14 DEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQL 62 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555 99999999999999999999998888877777777654
No 11
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=96.16 E-value=0.021 Score=46.81 Aligned_cols=53 Identities=26% Similarity=0.337 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHH
Q 017286 239 QQFAQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESL 298 (374)
Q Consensus 239 RqSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL 298 (374)
|-+||-.|-||++-+.+||..+..|+.++..|..++..+ .-|-..+|+++++|
T Consensus 36 RgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~-------~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 36 RGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRL-------ARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHh
Confidence 599999999999999999999888888777777666655 45555666666554
No 12
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=96.04 E-value=0.00072 Score=57.02 Aligned_cols=42 Identities=24% Similarity=0.362 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 017286 239 QQFAQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQ 280 (374)
Q Consensus 239 RqSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~ 280 (374)
|.+||++|.||++.+.+||..+..|+.+...|..+...|..+
T Consensus 46 R~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~~E 87 (107)
T 3a5t_A 46 RGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLE 87 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999988888877776655555433
No 13
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=95.55 E-value=0.27 Score=41.38 Aligned_cols=76 Identities=20% Similarity=0.234 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhH--------------HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 250 LQYIAELERNVQSLQAEGTEVSAELEFLNQQNL--------------ILSMENKALKQRLESLAQEQLIKCLEHEVLERE 315 (374)
Q Consensus 250 lqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~--------------~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~E 315 (374)
-.||.+|-++|..+..+++.|-.+|.-++.... .+.++-..||..+....-.+.=-+...+.|+.|
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eE 98 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEE 98 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHH
Confidence 358888888888888888888887777654332 233333455555554444444445668999999
Q ss_pred HHHHHHHHHH
Q 017286 316 IGRLRVVYQQ 325 (374)
Q Consensus 316 i~RLr~l~~q 325 (374)
|.-||.+|.+
T Consensus 99 l~FLKk~hee 108 (119)
T 3ol1_A 99 IAFLKKLHEE 108 (119)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999987
No 14
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=95.04 E-value=0.3 Score=39.38 Aligned_cols=49 Identities=29% Similarity=0.268 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHH
Q 017286 252 YIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQ 300 (374)
Q Consensus 252 YI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q 300 (374)
-+..||.||+.+=.+++-|.-+|..|.+++..|..||.+++..-+.|.+
T Consensus 7 lleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~ 55 (81)
T 2jee_A 7 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELER 55 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4678999999887777777777777777777777766666665555554
No 15
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=94.43 E-value=0.43 Score=38.48 Aligned_cols=56 Identities=16% Similarity=0.175 Sum_probs=31.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 261 QSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREI 316 (374)
Q Consensus 261 q~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei 316 (374)
..|+..+-.+-..|++|+.+...|..+|..|.+..+.+....-..+..++.|+.|.
T Consensus 9 eqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~ 64 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQ 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 45666666666666666555555555555555555555554444444444444444
No 16
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=94.40 E-value=0.36 Score=43.51 Aligned_cols=77 Identities=22% Similarity=0.248 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 240 QFAQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRL 319 (374)
Q Consensus 240 qSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RL 319 (374)
..-+|.|-+--.-|.||+.+|..|+.|+..+...++.+ ..||..|-.+|..|+.++--.+. .|.-|+.-|
T Consensus 79 ~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~-------~~e~r~L~Ekl~~lEKe~a~~ei---d~~~eLKal 148 (168)
T 3o0z_A 79 EAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKV-------EGERKEAQDMLNHSEKEKNNLEI---DLNYKLKSL 148 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhH---HHHHHHHHH
Confidence 44566777777888889988888888888888777764 78999999999999987654331 233566667
Q ss_pred HHHHHHh
Q 017286 320 RVVYQQQ 326 (374)
Q Consensus 320 r~l~~qq 326 (374)
.+.|+|-
T Consensus 149 Q~~~eqE 155 (168)
T 3o0z_A 149 QQRLEQE 155 (168)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777763
No 17
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=94.11 E-value=0.47 Score=38.56 Aligned_cols=64 Identities=27% Similarity=0.363 Sum_probs=46.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHhH-----HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 258 RNVQSLQAEGTEVSAELEFLNQQNL-----ILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRV 321 (374)
Q Consensus 258 rkVq~LQ~E~a~Ls~~i~~L~~~~~-----~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~ 321 (374)
.||..|+.+|..|..+|..++.+.. +-..+=..|+.+|..+..++.--+.....|..++.+||.
T Consensus 23 dKVR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 23 DKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3688888888888888877765422 234555677888888887777777777778888888875
No 18
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=93.74 E-value=0.44 Score=41.31 Aligned_cols=56 Identities=14% Similarity=0.133 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHH
Q 017286 248 RKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQL 303 (374)
Q Consensus 248 RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~ 303 (374)
...+.+.+||..++.+..|+..|..++..++.+...+..|+.+|+.++..|+.+..
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~ 127 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIV 127 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455778888888888888888888888888888888888888888888876543
No 19
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=93.54 E-value=0.14 Score=39.38 Aligned_cols=39 Identities=33% Similarity=0.325 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHH
Q 017286 254 AELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALK 292 (374)
Q Consensus 254 ~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK 292 (374)
..=|.|||.|..-+..|+.+|..|+..-..|..||..|+
T Consensus 23 aaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 23 ATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 345889999999999999999999999999999999987
No 20
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=93.05 E-value=0.37 Score=35.05 Aligned_cols=44 Identities=23% Similarity=0.311 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHH
Q 017286 255 ELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQE 301 (374)
Q Consensus 255 ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~ 301 (374)
+||.||..|+.-.-.|..+++.|--+ ..+-+..||+||..|+.+
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae---~~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAE---YNATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhc
Confidence 57777777777777777777666433 345568899999999874
No 21
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.07 E-value=2.4 Score=42.34 Aligned_cols=75 Identities=16% Similarity=0.062 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017286 254 AELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQQQQ 328 (374)
Q Consensus 254 ~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~qqq~ 328 (374)
..|++.++.++.+.+.+..++..++++...+..+-..|+.++..|++...-+....++|++|++.+++-..+.++
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555444445555555555566655555555566777777777665555333
No 22
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=91.72 E-value=1.2 Score=37.14 Aligned_cols=18 Identities=33% Similarity=0.460 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 017286 307 LEHEVLEREIGRLRVVYQ 324 (374)
Q Consensus 307 a~~E~L~~Ei~RLr~l~~ 324 (374)
-..+.|.+||+|||..+.
T Consensus 75 ~~~e~Lq~E~erLr~~v~ 92 (100)
T 1go4_E 75 EDHSQLQAECERLRGLLR 92 (100)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 457899999999998764
No 23
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=91.39 E-value=0.32 Score=38.49 Aligned_cols=51 Identities=18% Similarity=0.075 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHH
Q 017286 251 QYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQE 301 (374)
Q Consensus 251 qYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~ 301 (374)
+-|.+||.|+..++..+.+|+..|+..+++-..|..+-..|..||.+++..
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~~ 64 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRST 64 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 358899999999999999999999999999999999999999999888753
No 24
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=90.67 E-value=0.31 Score=46.43 Aligned_cols=42 Identities=24% Similarity=0.275 Sum_probs=27.9
Q ss_pred HHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 273 ELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRV 321 (374)
Q Consensus 273 ~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~ 321 (374)
++..|+.+...|...|..|+..|..+.+ +.+.|++||++|+.
T Consensus 55 ~l~eL~~ql~~L~arNe~L~~~Lk~ar~-------El~~LkeElerL~s 96 (251)
T 3m9b_A 55 DIHQLEARIDSLAARNSKLMETLKEARQ-------QLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHH-------HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhcC
Confidence 3455666666666666667766666665 45677788877765
No 25
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=90.59 E-value=0.7 Score=36.99 Aligned_cols=40 Identities=23% Similarity=0.296 Sum_probs=25.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 284 LSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVY 323 (374)
Q Consensus 284 L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~ 323 (374)
+..+|..|+.+|..|+++..=.-..++.++.|+.+|-.++
T Consensus 18 ~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~L 57 (79)
T 3cvf_A 18 LETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLL 57 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777776665555555667777776665543
No 26
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=90.33 E-value=2 Score=34.73 Aligned_cols=34 Identities=26% Similarity=0.353 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 292 KQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQ 325 (374)
Q Consensus 292 K~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~q 325 (374)
.+++..|+++...-.+..+.|+.|+..||.++.+
T Consensus 42 ~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 42 QHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333344688899999998876
No 27
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=90.13 E-value=2.2 Score=37.98 Aligned_cols=40 Identities=25% Similarity=0.182 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHH
Q 017286 256 LERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRL 295 (374)
Q Consensus 256 LErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL 295 (374)
-.+-++.|+-|..+|..++..++.....|..||..|-+|.
T Consensus 94 K~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 94 KNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356677777777777777777777777777777777765
No 28
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=90.06 E-value=0.81 Score=36.34 Aligned_cols=47 Identities=17% Similarity=0.188 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHH
Q 017286 254 AELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQL 303 (374)
Q Consensus 254 ~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~ 303 (374)
.+||.||..|+.-.-.|..+++.|--+ ..+-+..||+||..|+.+..
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaE---y~ssQ~KLKqRit~LE~~~~ 49 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAE---YESMQQKLKQRLTKVEKFLK 49 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhc
Confidence 357777777777777777777766433 34556889999999998643
No 29
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=89.62 E-value=1.1 Score=35.87 Aligned_cols=71 Identities=21% Similarity=0.240 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHH--------------hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQQ--------------NLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGR 318 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~~--------------~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~R 318 (374)
|.+|-++|..|..+++.|-.++.-++.. +..+.++=..||.-+..+.-.+.=-++..|.|+.||.-
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~f 81 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAF 81 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888877777666532 23333334455666666555555556678888889888
Q ss_pred HHHHH
Q 017286 319 LRVVY 323 (374)
Q Consensus 319 Lr~l~ 323 (374)
||.+|
T Consensus 82 Lkk~h 86 (86)
T 3swk_A 82 LKKLH 86 (86)
T ss_dssp HTTCC
T ss_pred HhhcC
Confidence 87643
No 30
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=89.50 E-value=12 Score=33.79 Aligned_cols=87 Identities=17% Similarity=0.260 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHH-----HHHHHHH--HH
Q 017286 237 AKQQFAQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQ-----EQLIKCL--EH 309 (374)
Q Consensus 237 aKRqSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q-----~~~lkda--~~ 309 (374)
.|-++-.=-|+||.+ .||-..++.++..+.+|..++..|+..+..|.-|...|.-.|..=.. ...++|. -.
T Consensus 22 Lk~EsE~~~rlkK~~--tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri 99 (168)
T 3o0z_A 22 LRTESDTAVRLRKSH--TEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARI 99 (168)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666777875 67777777777777777777777777777777777776655543321 1223332 35
Q ss_pred HHHHHHHHHHHHHHHH
Q 017286 310 EVLEREIGRLRVVYQQ 325 (374)
Q Consensus 310 E~L~~Ei~RLr~l~~q 325 (374)
..|..|+.|+|.-+..
T Consensus 100 ~~L~~El~~~k~~~~k 115 (168)
T 3o0z_A 100 TSLQEEVKHLKHNLEK 115 (168)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6788888888875544
No 31
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=89.03 E-value=3 Score=46.40 Aligned_cols=15 Identities=47% Similarity=0.454 Sum_probs=5.5
Q ss_pred HHHHHHhhHHHHHHH
Q 017286 260 VQSLQAEGTEVSAEL 274 (374)
Q Consensus 260 Vq~LQ~E~a~Ls~~i 274 (374)
|..|+.|+..|..++
T Consensus 986 v~~L~~e~~~l~~~~ 1000 (1080)
T 2dfs_A 986 VLSLQEEIAKLRKEL 1000 (1080)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 32
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=88.91 E-value=1.1 Score=33.75 Aligned_cols=29 Identities=45% Similarity=0.485 Sum_probs=21.1
Q ss_pred HHHHHHHHhHHHHHhhHHHHHHHHHHHHH
Q 017286 273 ELEFLNQQNLILSMENKALKQRLESLAQE 301 (374)
Q Consensus 273 ~i~~L~~~~~~L~~EN~~LK~rL~aL~q~ 301 (374)
++..|..+...|..+|.+|+.+|+.|+.+
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E 52 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777888888888887666553
No 33
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=88.61 E-value=1.6 Score=34.65 Aligned_cols=37 Identities=32% Similarity=0.487 Sum_probs=21.6
Q ss_pred HHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 275 EFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQ 325 (374)
Q Consensus 275 ~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~q 325 (374)
..+++....|..||..|+.+|+ .|+.|+..||.++.|
T Consensus 39 ~e~~~r~~~L~~eN~~L~~~v~--------------~L~~E~~~Lr~ll~q 75 (78)
T 1gu4_A 39 LETQHKVLELTAENERLQKKVE--------------QLSRELSTLRNLFKQ 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHH
Confidence 3344444555566666655554 567788888876543
No 34
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=88.60 E-value=3.5 Score=45.93 Aligned_cols=41 Identities=10% Similarity=0.128 Sum_probs=20.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHH
Q 017286 259 NVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLA 299 (374)
Q Consensus 259 kVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~ 299 (374)
.++.+++++..|..+++.|+++...+..|+.+|+++++.+.
T Consensus 978 e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~ 1018 (1080)
T 2dfs_A 978 EAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK 1018 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444445555555555555555555555555444443
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=87.52 E-value=6.7 Score=39.13 Aligned_cols=24 Identities=29% Similarity=0.184 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 017286 305 KCLEHEVLEREIGRLRVVYQQQQQ 328 (374)
Q Consensus 305 kda~~E~L~~Ei~RLr~l~~qqq~ 328 (374)
+....+.|++|+.+|+..+..++.
T Consensus 535 ~~~~~~~~~~~~~~le~~~~~~~~ 558 (597)
T 3oja_B 535 KQKETEDLEQENIALEKQLDNKRA 558 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcchhhHHhhhHHHHHHHhhhhh
Confidence 334556666777777776666544
No 36
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=87.37 E-value=4.7 Score=30.19 Aligned_cols=28 Identities=21% Similarity=0.230 Sum_probs=21.2
Q ss_pred HHHHHHHHhHHHHHhhHHHHHHHHHHHH
Q 017286 273 ELEFLNQQNLILSMENKALKQRLESLAQ 300 (374)
Q Consensus 273 ~i~~L~~~~~~L~~EN~~LK~rL~aL~q 300 (374)
.+..|+.+...|..+|..|+..|+.|..
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~ 51 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLK 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777788888888999999888754443
No 37
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=87.36 E-value=1.7 Score=31.08 Aligned_cols=37 Identities=19% Similarity=0.222 Sum_probs=22.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHH
Q 017286 259 NVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRL 295 (374)
Q Consensus 259 kVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL 295 (374)
.|..|+..+.+|..+.+.|++....|..||..|++-|
T Consensus 4 Yl~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 4 YLSELENRVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 3555666666666666666666666666666666554
No 38
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=86.71 E-value=3 Score=31.08 Aligned_cols=45 Identities=27% Similarity=0.347 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHH
Q 017286 254 AELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESL 298 (374)
Q Consensus 254 ~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL 298 (374)
..|-++|+.|..|++.|..++.-=..+...|..|-..+|.-+.-|
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~l 50 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQL 50 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHH
Confidence 457777777777777777777776666666666666666555433
No 39
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=86.57 E-value=0.67 Score=31.65 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLN 278 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~ 278 (374)
+..||.||..|-.|++.|..+|+.|.
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 46799999999999999999998884
No 40
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=86.52 E-value=4 Score=36.30 Aligned_cols=45 Identities=24% Similarity=0.283 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHH
Q 017286 256 LERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQ 300 (374)
Q Consensus 256 LErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q 300 (374)
|+.+|..|..|...-..-+..++-+...|..+++.+..++..|+.
T Consensus 80 l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~ 124 (152)
T 3a7p_A 80 KEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKK 124 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333334444444444444444444444444444
No 41
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=86.44 E-value=7.8 Score=33.02 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFL 277 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L 277 (374)
+.+|+.++..|+.+...+..++..+
T Consensus 22 ~~~l~~~l~~l~~~~~~~~~~~~~~ 46 (284)
T 1c1g_A 22 ADEAEADKKAAEDRSKQLEDELVSL 46 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444333333333333333
No 42
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=86.06 E-value=1.1 Score=30.67 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLN 278 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~ 278 (374)
+..||.||..|-.++.+|..+|..|.
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 67899999999999999999888874
No 43
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=85.35 E-value=3 Score=30.65 Aligned_cols=40 Identities=30% Similarity=0.312 Sum_probs=28.0
Q ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 279 QQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQ 325 (374)
Q Consensus 279 ~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~q 325 (374)
++-..|..-|..|-++++.|+.. ...++.||+||+.+..|
T Consensus 4 q~l~kLKe~n~~L~~kv~~Le~~-------c~~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 4 RQILRLKQINIQLATKIQHLEFS-------CSEKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------ccHHHHHHHHHHHHHHH
Confidence 33445666677777777777664 34556899999998876
No 44
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=85.17 E-value=4.1 Score=32.08 Aligned_cols=43 Identities=14% Similarity=0.231 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHH
Q 017286 255 ELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLES 297 (374)
Q Consensus 255 ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~a 297 (374)
++..|++.++.+|.+|..+|..|+++-..-..+...++..|+.
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~ 46 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKT 46 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555544444444444444433333
No 45
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=84.39 E-value=0.72 Score=31.49 Aligned_cols=18 Identities=28% Similarity=0.411 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 017286 308 EHEVLEREIGRLRVVYQQ 325 (374)
Q Consensus 308 ~~E~L~~Ei~RLr~l~~q 325 (374)
.+..|+.||.|||.++.+
T Consensus 15 ~n~~Le~EV~RLk~Ll~~ 32 (33)
T 3m48_A 15 KNWNLENEVARLKKLVGE 32 (33)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HhHHHHHHHHHHHHHhhc
Confidence 467788999999988754
No 46
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=84.37 E-value=9.2 Score=28.89 Aligned_cols=30 Identities=23% Similarity=0.275 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 017286 249 KLQYIAELERNVQSLQAEGTEVSAELEFLN 278 (374)
Q Consensus 249 KlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~ 278 (374)
|-..|++||.++.++++-++.+..+|..+.
T Consensus 4 ~~~~~~~le~kl~~lEnIv~~l~~eve~~~ 33 (65)
T 3m0d_C 4 KEKLLAELEGKLRVFENIVAVLNKEVEASH 33 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 556789999999999998887766666553
No 47
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=84.16 E-value=3.6 Score=29.61 Aligned_cols=16 Identities=38% Similarity=0.291 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 017286 307 LEHEVLEREIGRLRVV 322 (374)
Q Consensus 307 a~~E~L~~Ei~RLr~l 322 (374)
-+...|++||-.||.-
T Consensus 31 dliaylekeianlrkk 46 (49)
T 3he5_A 31 DLIAYLEKEIANLRKK 46 (49)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3466788888888763
No 48
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=84.11 E-value=0.67 Score=43.36 Aligned_cols=42 Identities=33% Similarity=0.290 Sum_probs=30.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017286 282 LILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQQQ 327 (374)
Q Consensus 282 ~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~qqq 327 (374)
..|..||.+||.++..|+++.. ..+.|+.|-+|||.++.-..
T Consensus 22 ~~l~~eN~~Lk~e~~~l~~~~~----~~~~l~~En~rLr~lL~~~~ 63 (255)
T 2j5u_A 22 KNTYTENQHLKERLEELAQLES----EVADLKKENKDLKESLDITD 63 (255)
T ss_dssp ----CTTTTHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCcc
Confidence 3467888888888888877554 56778999999999987644
No 49
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=83.90 E-value=7.2 Score=33.63 Aligned_cols=45 Identities=13% Similarity=0.121 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHH
Q 017286 254 AELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESL 298 (374)
Q Consensus 254 ~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL 298 (374)
.+++..+..|..|..++.-++..+.++...|..++.+|..++..|
T Consensus 85 ~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 85 ENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444443
No 50
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=83.40 E-value=1.5 Score=34.22 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHH
Q 017286 250 LQYIAELERNVQSLQAEGTEVSAE 273 (374)
Q Consensus 250 lqYI~ELErkVq~LQ~E~a~Ls~~ 273 (374)
..||..|+..++.|+.|...|..+
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~ 69 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQ 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357777777777666555444433
No 51
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=83.02 E-value=3.6 Score=40.89 Aligned_cols=52 Identities=15% Similarity=0.165 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 270 VSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRV 321 (374)
Q Consensus 270 Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~ 321 (374)
|..+|..|+++...|..+...|+.+++.+.++.+-.+.+-..|..+|+.||.
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkg 59 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRG 59 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3333344444444444444444444444444444344455556666666653
No 52
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=82.75 E-value=21 Score=30.27 Aligned_cols=10 Identities=20% Similarity=0.537 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 017286 289 KALKQRLESL 298 (374)
Q Consensus 289 ~~LK~rL~aL 298 (374)
..++.++..+
T Consensus 86 ~~~~~~~~~~ 95 (284)
T 1c1g_A 86 ASLNRRIQLF 95 (284)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 53
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=82.34 E-value=8.4 Score=32.43 Aligned_cols=28 Identities=29% Similarity=0.255 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 017286 252 YIAELERNVQSLQAEGTEVSAELEFLNQ 279 (374)
Q Consensus 252 YI~ELErkVq~LQ~E~a~Ls~~i~~L~~ 279 (374)
.|.||-+.|+.|+.|+..|..+...|+.
T Consensus 39 Ei~elrr~iq~L~~el~~l~~~~~sLE~ 66 (131)
T 3tnu_A 39 EISELRRTMQNLEIELQSQLSMKASLEN 66 (131)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4777777777777777766666555543
No 54
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=82.27 E-value=2.1 Score=29.19 Aligned_cols=26 Identities=8% Similarity=0.249 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLN 278 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~ 278 (374)
+..||.||+.|-.++..|..+|+.|.
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk 27 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 56899999999999999999998874
No 55
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=82.01 E-value=5.8 Score=33.19 Aligned_cols=27 Identities=19% Similarity=0.356 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 017286 245 SRVRKLQYIAELERNVQSLQAEGTEVS 271 (374)
Q Consensus 245 SR~RKlqYI~ELErkVq~LQ~E~a~Ls 271 (374)
||.==.+.-.+||+++..|+.|+.-|.
T Consensus 31 SKqELIqEYl~LE~~~s~le~e~~rlr 57 (104)
T 3s9g_A 31 SKQELIKEYLELEKSLSRMEDENNRLR 57 (104)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555677777777666555443
No 56
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=81.99 E-value=20 Score=34.88 Aligned_cols=75 Identities=23% Similarity=0.189 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHH-----------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 246 RVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLI-----------LSMENKALKQRLESLAQEQLIKCLEHEVLER 314 (374)
Q Consensus 246 R~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~-----------L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~ 314 (374)
-+.+.....|.+..++.||..++.+...+..++.|-.. |..+-+.-..||+.|+.+.--.....+.+++
T Consensus 385 ~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (471)
T 3mq9_A 385 ARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASA 464 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555556666666665555555443221 2222222223555555544444445556666
Q ss_pred HHHHHH
Q 017286 315 EIGRLR 320 (374)
Q Consensus 315 Ei~RLr 320 (374)
||+|||
T Consensus 465 ~~~~~~ 470 (471)
T 3mq9_A 465 EVERLR 470 (471)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666665
No 57
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=81.97 E-value=19 Score=29.38 Aligned_cols=65 Identities=26% Similarity=0.299 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 252 YIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQ 324 (374)
Q Consensus 252 YI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~ 324 (374)
+|..|-.+=-+|.+-+.+-+-+...+++ ...|..||..|..+++.|.+ ++..+.+|+..+|.-|+
T Consensus 22 ev~~lKq~RRtlKNRgyAq~CR~Kr~~q-~~~LE~e~~~L~~e~~~L~~-------e~~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 22 EVIRLKQKRRTLKNRGYAQSCRYKRVQQ-KHHLENEKTQLIQQVEQLKQ-------EVSRLARERDAYKVKSE 86 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 4555556666777888888888877744 47888899999888888887 56778888888888775
No 58
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=81.86 E-value=10 Score=31.74 Aligned_cols=29 Identities=31% Similarity=0.359 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 017286 252 YIAELERNVQSLQAEGTEVSAELEFLNQQ 280 (374)
Q Consensus 252 YI~ELErkVq~LQ~E~a~Ls~~i~~L~~~ 280 (374)
.|.||-+.|+.|+.|+..|..+...|+..
T Consensus 37 Ei~elrr~iq~L~~el~~l~~~~~~LE~~ 65 (129)
T 3tnu_B 37 EISEMNRMIQRLRAEIDNVKKQCANLQNA 65 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 47777778888877777777666665443
No 59
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=81.77 E-value=0.68 Score=38.95 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHH
Q 017286 282 LILSMENKALKQRLESLAQEQL 303 (374)
Q Consensus 282 ~~L~~EN~~LK~rL~aL~q~~~ 303 (374)
..|..+|..|+.||+.|+.+++
T Consensus 94 ~~l~~~n~~L~~riqeLE~~a~ 115 (118)
T 4ati_A 94 KKLEHANRHLLLRVQELEMQAR 115 (118)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3467778888888888877654
No 60
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=81.71 E-value=9.3 Score=30.50 Aligned_cols=61 Identities=28% Similarity=0.312 Sum_probs=23.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHH-------HHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 258 RNVQSLQAEGTEVSAELEFLN-------QQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGR 318 (374)
Q Consensus 258 rkVq~LQ~E~a~Ls~~i~~L~-------~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~R 318 (374)
+.|+.|-.|++.|...-..|. ..-..|+.|+..|+..|.++.+-+.--+.-...|+.|+.|
T Consensus 9 kevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElkr 76 (77)
T 2w83_C 9 REVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELRK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555556655544322221 2233445555555555555554433333334444444443
No 61
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=81.68 E-value=2.3 Score=29.19 Aligned_cols=27 Identities=7% Similarity=0.195 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQ 279 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~ 279 (374)
+..||.||+.|-.++..|..+|+.|..
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 678999999999999999999988743
No 62
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=81.68 E-value=2.7 Score=28.81 Aligned_cols=17 Identities=29% Similarity=0.519 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 017286 308 EHEVLEREIGRLRVVYQ 324 (374)
Q Consensus 308 ~~E~L~~Ei~RLr~l~~ 324 (374)
.++.|+.||.|||.++.
T Consensus 16 ~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 16 KNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred hhhhHHHHHHHHHHHHh
Confidence 46788889999998764
No 63
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=81.57 E-value=4.5 Score=32.03 Aligned_cols=45 Identities=27% Similarity=0.347 Sum_probs=27.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHH
Q 017286 257 ERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQE 301 (374)
Q Consensus 257 ErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~ 301 (374)
|..+..|+..+.--+.-...|.-+-..|..||+-|.+||+.|.++
T Consensus 31 e~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~E 75 (75)
T 3a7o_A 31 EQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLKKE 75 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhcC
Confidence 334444444444444455666666777899999999999988764
No 64
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=81.26 E-value=14 Score=30.71 Aligned_cols=60 Identities=17% Similarity=0.182 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------------HhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHH
Q 017286 241 FAQRSRVRKLQYIAELERNVQSLQ------------------AEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQ 300 (374)
Q Consensus 241 SAqRSR~RKlqYI~ELErkVq~LQ------------------~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q 300 (374)
+++-+..=...++.+||.+|..++ .|+++=..+|..|+.....+..+|..|..++..++.
T Consensus 19 ~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~~ 96 (107)
T 2no2_A 19 MARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELEK 96 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555666677777776633 333333334444555555555555555555555444
No 65
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=80.70 E-value=11 Score=27.72 Aligned_cols=28 Identities=21% Similarity=0.141 Sum_probs=19.5
Q ss_pred HHHHHHHHhHHHHHhhHHHHHHHHHHHH
Q 017286 273 ELEFLNQQNLILSMENKALKQRLESLAQ 300 (374)
Q Consensus 273 ~i~~L~~~~~~L~~EN~~LK~rL~aL~q 300 (374)
.+..|+.....|..+|..|+.+|+.|..
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~ 50 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRN 50 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777788887777765544
No 66
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=80.50 E-value=21 Score=30.02 Aligned_cols=28 Identities=14% Similarity=0.166 Sum_probs=13.7
Q ss_pred HHHHHHHHhHHHHHhhHHHHHHHHHHHH
Q 017286 273 ELEFLNQQNLILSMENKALKQRLESLAQ 300 (374)
Q Consensus 273 ~i~~L~~~~~~L~~EN~~LK~rL~aL~q 300 (374)
.++.|+.+...|..+|..|+.+|-.|+|
T Consensus 36 ~~~~Lq~El~~lr~~~~~l~~~iReLEq 63 (111)
T 2v66_B 36 QVSVLEDDLSQTRAIKEQLHKYVRELEQ 63 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555544444
No 67
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=80.36 E-value=2.7 Score=28.66 Aligned_cols=27 Identities=11% Similarity=0.143 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQ 279 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~ 279 (374)
+..||.||+.|-.++..|..+|+.|..
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 568999999999999999999988753
No 68
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=79.93 E-value=8.9 Score=35.19 Aligned_cols=37 Identities=27% Similarity=0.339 Sum_probs=25.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHH
Q 017286 260 VQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQL 303 (374)
Q Consensus 260 Vq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~ 303 (374)
|+.|+.|+..|+.++. ....|++.|+.+|++++.+..
T Consensus 22 V~~L~~En~~L~~ql~-------~k~~ei~~L~~ql~sl~~~~~ 58 (190)
T 4emc_A 22 VANLVNENFVLSEKLD-------TKATEIKQLQKQIDSLNAQVK 58 (190)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhhh
Confidence 5555555555555554 557788888888888887753
No 69
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=79.93 E-value=16 Score=29.33 Aligned_cols=59 Identities=22% Similarity=0.231 Sum_probs=39.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 258 RNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREI 316 (374)
Q Consensus 258 rkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei 316 (374)
++-+-|-.|+..|.-+|+.|+.++..-.-.=++=|..|..|.++.-.+|+..+.|..|+
T Consensus 19 ~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 19 RKAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44445666777777777776665554444445556888888888888888666666654
No 70
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=79.70 E-value=2.8 Score=29.07 Aligned_cols=27 Identities=15% Similarity=0.287 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQ 279 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~ 279 (374)
+..||.||+.|-.++..|..+|+.|..
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 678999999999999999999988854
No 71
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=79.57 E-value=6.3 Score=28.35 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHH
Q 017286 252 YIAELERNVQSLQAEGTEVSA 272 (374)
Q Consensus 252 YI~ELErkVq~LQ~E~a~Ls~ 272 (374)
.++.||..|.+|++|+.+|..
T Consensus 4 lvaqlenevaslenenetlkk 24 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKK 24 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHH
Confidence 467788888888888877765
No 72
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=79.50 E-value=6.3 Score=43.86 Aligned_cols=41 Identities=22% Similarity=0.305 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQ 293 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~ 293 (374)
|.+|+.++..|+.+...+...+..++.+...|..+-.+|+.
T Consensus 859 l~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~ 899 (1184)
T 1i84_S 859 MQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQE 899 (1184)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444333333
No 73
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=79.21 E-value=13 Score=29.73 Aligned_cols=48 Identities=19% Similarity=0.225 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHH
Q 017286 254 AELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQE 301 (374)
Q Consensus 254 ~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~ 301 (374)
.++..|++.|+.+|..|..+|..|+++-..-..+...++..|+.+.+.
T Consensus 9 e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~ 56 (79)
T 3cvf_A 9 EETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQL 56 (79)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888888888888888888777777777777777666554
No 74
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=79.05 E-value=17 Score=37.29 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 017286 308 EHEVLEREIGRLRVVYQQQQQ 328 (374)
Q Consensus 308 ~~E~L~~Ei~RLr~l~~qqq~ 328 (374)
+.+.|+..|++|...+.+|..
T Consensus 176 ~~~~l~~ki~~l~~~~~~~~~ 196 (464)
T 1m1j_B 176 VIDSLHKKIQKLENAIATQTD 196 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888887766544
No 75
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=78.95 E-value=5.2 Score=39.96 Aligned_cols=53 Identities=23% Similarity=0.211 Sum_probs=24.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 261 QSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLR 320 (374)
Q Consensus 261 q~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr 320 (374)
.+|+.|+.+|..++..|+++...+..|+..++++| .-.+.+...|..+|+.||
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l-------~~~~~~rr~l~n~~~~l~ 58 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQL-------FQSNMERKELHNTVMDLR 58 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhC
Confidence 34444555555555555444444444444444433 223334444555555554
No 76
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=78.86 E-value=22 Score=27.93 Aligned_cols=48 Identities=15% Similarity=0.176 Sum_probs=34.6
Q ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 277 LNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQ 324 (374)
Q Consensus 277 L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~ 324 (374)
+.+....+..+|..|+.+|..|+++..=.-..++.++.|+.+|-.++.
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld 52 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILD 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455668888888888888888765555568888888887766543
No 77
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=78.29 E-value=40 Score=30.70 Aligned_cols=48 Identities=29% Similarity=0.360 Sum_probs=22.6
Q ss_pred HHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 275 EFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQ 325 (374)
Q Consensus 275 ~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~q 325 (374)
..|+..+..|..|.-.+|.++.....+..- ..-.|.+||..||....+
T Consensus 59 ~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~---~~~~Lq~el~~l~~~~~~ 106 (189)
T 2v71_A 59 RDLQADNQRLKYEVEALKEKLEHQYAQSYK---QVSVLEDDLSQTRAIKEQ 106 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 333333334444444455555444433211 345566666666655444
No 78
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=77.91 E-value=29 Score=36.21 Aligned_cols=82 Identities=23% Similarity=0.283 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHHHHHHhH-HHHHhhHHHHHHHHHHHHHHHHHHHH--
Q 017286 236 RAKQQFAQRSRVRKLQYIAELER----NVQSLQAEGTEVSAELEFLNQQNL-ILSMENKALKQRLESLAQEQLIKCLE-- 308 (374)
Q Consensus 236 RaKRqSAqRSR~RKlqYI~ELEr----kVq~LQ~E~a~Ls~~i~~L~~~~~-~L~~EN~~LK~rL~aL~q~~~lkda~-- 308 (374)
|+|++.|.+-...-.+-..++|. +-+++|.-+..|..+ |++++. .|...+..|..+|+ +|+.+++++.
T Consensus 493 ~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~k---me~~~~~~~~e~~~~~~~~~~--~~~~~~~~g~~~ 567 (592)
T 1f5n_A 493 RVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEK---MENDRVQLLKEQERTLALKLQ--EQEQLLKEGFQK 567 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 45566665444433333333333 333344444444332 233333 33333445555554 4556666653
Q ss_pred -HHHHHHHHHHHHHH
Q 017286 309 -HEVLEREIGRLRVV 322 (374)
Q Consensus 309 -~E~L~~Ei~RLr~l 322 (374)
.+.|.+||+.|+.-
T Consensus 568 ~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 568 ESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 56788888888763
No 79
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=77.61 E-value=2.5 Score=29.33 Aligned_cols=27 Identities=22% Similarity=0.380 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQ 279 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~ 279 (374)
+..||.||..|-.++..|..+|+.|..
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~ 29 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEK 29 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 568999999999999999998888754
No 80
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=77.58 E-value=2.5 Score=28.98 Aligned_cols=27 Identities=11% Similarity=0.241 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQ 279 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~ 279 (374)
+..||.||+.|-.+++.|..+|+.|..
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 568999999999999999999988743
No 81
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=77.42 E-value=20 Score=30.33 Aligned_cols=14 Identities=21% Similarity=0.451 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 017286 251 QYIAELERNVQSLQ 264 (374)
Q Consensus 251 qYI~ELErkVq~LQ 264 (374)
.||.+|+.+|..|+
T Consensus 40 ~~v~ql~~~i~~Le 53 (120)
T 3i00_A 40 RVVLQLKGHVSELE 53 (120)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 82
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=77.21 E-value=4.5 Score=34.71 Aligned_cols=11 Identities=45% Similarity=0.489 Sum_probs=5.2
Q ss_pred HHHHHHHHHHH
Q 017286 314 REIGRLRVVYQ 324 (374)
Q Consensus 314 ~Ei~RLr~l~~ 324 (374)
.||+|||.-.+
T Consensus 92 ae~erlr~~~~ 102 (121)
T 3mq7_A 92 AEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhch
Confidence 34555554444
No 83
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=77.08 E-value=6.2 Score=29.85 Aligned_cols=40 Identities=33% Similarity=0.326 Sum_probs=24.5
Q ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 279 QQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQ 325 (374)
Q Consensus 279 ~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~q 325 (374)
++-..|..-|-.|-.+++-|+.++--+ +.||+||+.|..|
T Consensus 11 ~q~~kLKq~n~~L~~kv~~Le~~c~e~-------eQEieRL~~LLkq 50 (58)
T 3a2a_A 11 RQLLRLKQMNVQLAAKIQHLEFSCSEK-------EQEIERLNKLLRQ 50 (58)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 334445555666666666666655433 3578888888766
No 84
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=76.73 E-value=6.5 Score=39.53 Aligned_cols=51 Identities=14% Similarity=0.117 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHH
Q 017286 247 VRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLES 297 (374)
Q Consensus 247 ~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~a 297 (374)
.+=-+|.+|||+++..|+..+..-...|..|+.....+..+=..|...|..
T Consensus 109 n~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id~ 159 (390)
T 1deq_A 109 NTFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDIDI 159 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344689999999999999999988889999988777777766666666633
No 85
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=76.68 E-value=13 Score=32.98 Aligned_cols=67 Identities=16% Similarity=0.212 Sum_probs=46.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 257 ERNVQSLQAEGTEVSAELEFLNQQNLILSME---NKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQ 325 (374)
Q Consensus 257 ErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~E---N~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~q 325 (374)
|.....++.|+..|++ +++++-+.|...+ ...++.|..-|+.+-.=++++-+.|..++.+||.+++.
T Consensus 78 E~~~~~ie~ElEeLTa--sLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~ 147 (154)
T 2ocy_A 78 EEEADKLNKEVEDLTA--SLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMHS 147 (154)
T ss_dssp HTHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666667666665 2334444444433 34467778888877777888999999999999998754
No 86
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=76.32 E-value=2.9 Score=28.70 Aligned_cols=27 Identities=15% Similarity=0.458 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQ 279 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~ 279 (374)
+..||.||+.|-.++..|..+|+.|..
T Consensus 3 MnQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 3 MKQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 578999999999999999999988753
No 87
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=76.20 E-value=12 Score=30.30 Aligned_cols=27 Identities=30% Similarity=0.318 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHHHHhHHHHHhhHHHH
Q 017286 266 EGTEVSAELEFLNQQNLILSMENKALK 292 (374)
Q Consensus 266 E~a~Ls~~i~~L~~~~~~L~~EN~~LK 292 (374)
||..|..+|..++.+...|..||..|+
T Consensus 39 EN~~Lh~~ie~~~eEi~~Lk~en~~L~ 65 (83)
T 1wlq_A 39 ENEKLHKEIEQKDSEIARLRKENKDLA 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666667777666667777776665
No 88
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=76.04 E-value=27 Score=35.32 Aligned_cols=77 Identities=10% Similarity=0.026 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHH------------------HhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 252 YIAELERNVQSLQAEGTEVSAELEFLNQ------------------QNLILSMENKALKQRLESLAQEQLIKCLEHEVLE 313 (374)
Q Consensus 252 YI~ELErkVq~LQ~E~a~Ls~~i~~L~~------------------~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~ 313 (374)
=|.+||..|+.|.+-.++...-|..|+. ....+..|...|..-|...+.+-...+.+.+.+.
T Consensus 39 ~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~~~~i~~l~~~~~~~~ 118 (411)
T 3ghg_C 39 DLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTHDSSIRYLQEIYNSNN 118 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4788999999998888888888877763 1122223333333333333333222333456677
Q ss_pred HHHHHHHHHHHHhhh
Q 017286 314 REIGRLRVVYQQQQQ 328 (374)
Q Consensus 314 ~Ei~RLr~l~~qqq~ 328 (374)
..|+.|+.++.++..
T Consensus 119 ~~i~~L~~~v~~l~~ 133 (411)
T 3ghg_C 119 QKIVNLKEKVAQLEA 133 (411)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 788889888887665
No 89
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=76.02 E-value=30 Score=28.00 Aligned_cols=48 Identities=21% Similarity=0.313 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQ 300 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q 300 (374)
+..|+..++.|..|-+.|..+|..|..+...|..|-.++...+..|.+
T Consensus 6 ~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~ 53 (96)
T 3q8t_A 6 SEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQ 53 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence 456777777777777777777777777666666666666666665554
No 90
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=75.81 E-value=2 Score=31.50 Aligned_cols=25 Identities=20% Similarity=0.437 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHH
Q 017286 251 QYIAELERNVQSLQAEGTEVSAELE 275 (374)
Q Consensus 251 qYI~ELErkVq~LQ~E~a~Ls~~i~ 275 (374)
.||.+||.+|..|+..+..|...|+
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5899999999999999988877553
No 91
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=75.77 E-value=3.6 Score=34.19 Aligned_cols=18 Identities=22% Similarity=0.277 Sum_probs=8.0
Q ss_pred hHHHHHhhHHHHHHHHHH
Q 017286 281 NLILSMENKALKQRLESL 298 (374)
Q Consensus 281 ~~~L~~EN~~LK~rL~aL 298 (374)
...|..|+..||.+|..|
T Consensus 77 ~e~Lq~E~erLr~~v~~l 94 (100)
T 1go4_E 77 HSQLQAECERLRGLLRAM 94 (100)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 92
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=75.72 E-value=9.1 Score=28.31 Aligned_cols=25 Identities=12% Similarity=0.163 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFL 277 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L 277 (374)
|.+|..+|+.|...+..|+..|..|
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al 30 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAA 30 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555554444444433
No 93
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=75.58 E-value=29 Score=29.08 Aligned_cols=26 Identities=23% Similarity=0.216 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLN 278 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~ 278 (374)
|..|+..++.|....+.|-..|..++
T Consensus 47 iq~L~~el~~l~~~~~sLE~~l~e~e 72 (131)
T 3tnu_A 47 MQNLEIELQSQLSMKASLENSLEETK 72 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34445555555555555555444443
No 94
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=75.25 E-value=11 Score=34.99 Aligned_cols=28 Identities=29% Similarity=0.340 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHHHHhHHHHHhhHHHHH
Q 017286 266 EGTEVSAELEFLNQQNLILSMENKALKQ 293 (374)
Q Consensus 266 E~a~Ls~~i~~L~~~~~~L~~EN~~LK~ 293 (374)
||..|..+|..|+.+...|..||.+||.
T Consensus 116 EN~~Lh~~ie~l~eEi~~LkeEn~eLke 143 (209)
T 2wvr_A 116 ENEKLHKEIEQKDNEIARLKKENKELAE 143 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777777777777777764
No 95
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=75.06 E-value=51 Score=30.23 Aligned_cols=24 Identities=13% Similarity=0.077 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHH
Q 017286 252 YIAELERNVQSLQAEGTEVSAELE 275 (374)
Q Consensus 252 YI~ELErkVq~LQ~E~a~Ls~~i~ 275 (374)
-+.+|++.+..++.++..+..+|.
T Consensus 54 ~l~d~~~~~~~~e~~i~~~~~ri~ 77 (256)
T 3na7_A 54 EKLALKLQVSKNEQTLQDTNAKIA 77 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444433333333
No 96
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=75.01 E-value=4 Score=32.01 Aligned_cols=47 Identities=23% Similarity=0.318 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHH---HHhhHHHHHHHH---HHHHHhHHHHHhhHHHHHHHHH
Q 017286 251 QYIAELERNVQSL---QAEGTEVSAELE---FLNQQNLILSMENKALKQRLES 297 (374)
Q Consensus 251 qYI~ELErkVq~L---Q~E~a~Ls~~i~---~L~~~~~~L~~EN~~LK~rL~a 297 (374)
..+.+|-.-|=.. ....+.|..-|. .|+.+...|..||.+|+.+++.
T Consensus 23 ~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 23 DKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555444321 123334444333 3455566666666666666554
No 97
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=74.97 E-value=26 Score=43.62 Aligned_cols=68 Identities=15% Similarity=0.098 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 256 LERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVY 323 (374)
Q Consensus 256 LErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~ 323 (374)
.+.+.+.++.+..+|..+|+.|+.+...++.|...|+.+++..+......+.|...|..|-.|-..-.
T Consensus 2026 ~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~ 2093 (3245)
T 3vkg_A 2026 LKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQS 2093 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHH
Confidence 34455556667777777888888888888888899999998888888888888888888877765533
No 98
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=74.62 E-value=25 Score=29.27 Aligned_cols=61 Identities=16% Similarity=0.228 Sum_probs=31.8
Q ss_pred HHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 264 QAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQ 324 (374)
Q Consensus 264 Q~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~ 324 (374)
+.++..|..+|..+..++..|..|-..++.-++.+...---.-.....++.||..||..+.
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD 79 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVD 79 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhccc
Confidence 4455566666666555555555554444444444433322222344556667777776543
No 99
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=74.40 E-value=21 Score=28.71 Aligned_cols=56 Identities=29% Similarity=0.312 Sum_probs=30.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 260 VQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQ 324 (374)
Q Consensus 260 Vq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~ 324 (374)
++.|...-++.-.+|-+|++++..|..+-..|+. ... ..+......||..||....
T Consensus 11 mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~-------~~~--~~~~~~ye~~i~~Lr~~i~ 66 (93)
T 3s4r_A 11 LQELNDRFANLIDKVRFLEQQNKILLAELEQLKG-------QGK--SRLGDLYEEEMRELRRQVD 66 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------ccC--CCcHHHHHHHHHHHHHHHH
Confidence 4566666677777777776666655554444332 211 1234445666666665443
No 100
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=74.26 E-value=4.2 Score=30.74 Aligned_cols=14 Identities=36% Similarity=0.551 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 017286 309 HEVLEREIGRLRVV 322 (374)
Q Consensus 309 ~E~L~~Ei~RLr~l 322 (374)
|..|+.||..||..
T Consensus 46 N~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 46 NYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444443
No 101
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=74.22 E-value=3.5 Score=28.26 Aligned_cols=27 Identities=15% Similarity=0.289 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQ 279 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~ 279 (374)
+..||.||+.|-.+++.|..+|+.|..
T Consensus 3 MnQLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 3 VKQLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 568999999999999999999988753
No 102
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=74.03 E-value=23 Score=31.40 Aligned_cols=48 Identities=17% Similarity=0.214 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQ 300 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q 300 (374)
+.+|+..+.....|...|..+++.-...+.....+++.+...|+.|..
T Consensus 46 ~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTa 93 (154)
T 2ocy_A 46 YNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTA 93 (154)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555666666666666666666666777777777777777654
No 103
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=73.91 E-value=17 Score=28.94 Aligned_cols=41 Identities=10% Similarity=0.099 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQ 293 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~ 293 (374)
+.+|-.+++.|+.|++.|..+|..++.+...|....+++=.
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~ 62 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILL 62 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666666655554444444444333
No 104
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=73.89 E-value=6.4 Score=26.83 Aligned_cols=28 Identities=11% Similarity=0.340 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 290 ALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQ 324 (374)
Q Consensus 290 ~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~ 324 (374)
.|..+++.|-+ .+..|+.||.|||.++.
T Consensus 4 QLEdKvEeLl~-------~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 4 XIEXKLXEIXS-------KXYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHH-------HhhHHHHHHHHHHHHHc
Confidence 34445555544 46778889999998764
No 105
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=73.87 E-value=22 Score=39.56 Aligned_cols=31 Identities=16% Similarity=0.108 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhH
Q 017286 252 YIAELERNVQSLQAEGTEVSAELEFLNQQNL 282 (374)
Q Consensus 252 YI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~ 282 (374)
.+.+|+.++..++.+..+|..++..|+++..
T Consensus 865 eL~el~~~L~~le~~l~ele~~l~~Le~e~~ 895 (1184)
T 1i84_S 865 ELQRTKERQQKAEAELKELEQKHTQLCEEKN 895 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433333
No 106
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=73.70 E-value=3.6 Score=28.23 Aligned_cols=18 Identities=17% Similarity=0.357 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 017286 308 EHEVLEREIGRLRVVYQQ 325 (374)
Q Consensus 308 ~~E~L~~Ei~RLr~l~~q 325 (374)
.+..|+.||.|||.+..+
T Consensus 16 ~n~~Le~EV~RLk~LL~~ 33 (34)
T 1uo4_A 16 KLYHIENELARIKKLLGE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHHcc
Confidence 466788899999988654
No 107
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=73.49 E-value=6.1 Score=26.41 Aligned_cols=29 Identities=28% Similarity=0.451 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQQN 281 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~~~ 281 (374)
+..||..|..-++|+-.|..+++.|++++
T Consensus 3 vaqlekevaqaeaenyqleqevaqlehec 31 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEHEC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 45677777777777777777777666543
No 108
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=73.42 E-value=38 Score=30.89 Aligned_cols=29 Identities=14% Similarity=0.161 Sum_probs=19.9
Q ss_pred HHHHHHHHhHHHHHhhHHHHHHHHHHHHH
Q 017286 273 ELEFLNQQNLILSMENKALKQRLESLAQE 301 (374)
Q Consensus 273 ~i~~L~~~~~~L~~EN~~LK~rL~aL~q~ 301 (374)
.++.|+.+...|..+|..|+.+|-.|+|.
T Consensus 89 ~~~~Lq~el~~l~~~~~~l~~~ireLEq~ 117 (189)
T 2v71_A 89 QVSVLEDDLSQTRAIKEQLHKYVRELEQA 117 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666666667777777777777776663
No 109
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=73.26 E-value=9.4 Score=30.77 Aligned_cols=44 Identities=23% Similarity=0.314 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHH
Q 017286 250 LQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLI 304 (374)
Q Consensus 250 lqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~l 304 (374)
..||..|...++.+..+. .....|.+.|..|..||+.||-+++.
T Consensus 38 vdYI~~Lq~e~~r~~e~e-----------~r~k~le~~n~~l~~riqELE~qa~~ 81 (83)
T 4ath_A 38 VDYIRKLQREQQRAKDLE-----------NRQKKLEHANRHLLLRVQELEMQARA 81 (83)
T ss_dssp HHHHHHHHHTHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 578877766555444333 33456889999999999999987753
No 110
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=73.17 E-value=7.3 Score=40.73 Aligned_cols=44 Identities=9% Similarity=0.108 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHh
Q 017286 244 RSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSME 287 (374)
Q Consensus 244 RSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~E 287 (374)
-..-.+-+|-+|||++++.|+.++.+...+|..|+.....+..+
T Consensus 103 dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~k 146 (562)
T 3ghg_A 103 NRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVD 146 (562)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33446667777888888888888877777777776655444444
No 111
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=73.12 E-value=6.8 Score=26.85 Aligned_cols=17 Identities=18% Similarity=0.151 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 017286 308 EHEVLEREIGRLRVVYQ 324 (374)
Q Consensus 308 ~~E~L~~Ei~RLr~l~~ 324 (374)
.+..|+.||.|||.++.
T Consensus 16 ~~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 16 XLYHXENEXARIXKLLX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 46778889999998764
No 112
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=72.78 E-value=7.7 Score=26.37 Aligned_cols=32 Identities=25% Similarity=0.397 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHH
Q 017286 267 GTEVSAELEFLNQQNLILSMENKALKQRLESL 298 (374)
Q Consensus 267 ~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL 298 (374)
++.|..++..|.++..+|+-.-++||+++.+|
T Consensus 3 vsalkekvsalkeqflmlmfkvsalkekvsal 34 (36)
T 3tq2_A 3 VSALKEKVSALKEQFLMLMFKVSALKEKVSAL 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56677788888888889999999999998876
No 113
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=72.35 E-value=12 Score=29.91 Aligned_cols=7 Identities=43% Similarity=0.534 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 017286 257 ERNVQSL 263 (374)
Q Consensus 257 ErkVq~L 263 (374)
|.+|..|
T Consensus 5 e~rv~~L 11 (83)
T 2xdj_A 5 EDRVTQL 11 (83)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 114
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=72.28 E-value=51 Score=33.76 Aligned_cols=54 Identities=15% Similarity=0.081 Sum_probs=28.4
Q ss_pred CchhhhHHHH---HHHHHHHHHH-------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHH
Q 017286 230 SDTETKRAKQ---QFAQRSRVRK-------LQYIAELERNVQSLQAEGTEVSAELEFLNQQNLI 283 (374)
Q Consensus 230 ~~~DpKRaKR---qSAqRSR~RK-------lqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~ 283 (374)
..+|.|-.+- .-++..+.|+ +..|.+|..+...|+.+...|.++...+.++-..
T Consensus 39 pmlD~~~ir~n~~~v~~~l~~R~~~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~ 102 (501)
T 1wle_A 39 PLLDMESLCAYPEDAARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEEKEAVTEAVRA 102 (501)
T ss_dssp CCCCHHHHHHSHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHhCHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677776542 2223333333 3555666666666666666666555555554433
No 115
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=72.07 E-value=5.1 Score=31.51 Aligned_cols=28 Identities=18% Similarity=0.108 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 017286 250 LQYIAELERNVQSLQAEGTEVSAELEFL 277 (374)
Q Consensus 250 lqYI~ELErkVq~LQ~E~a~Ls~~i~~L 277 (374)
..||..|+.+++.|+.|...|..++..|
T Consensus 46 ~~yI~~L~~~~~~l~~e~~~L~~e~~~L 73 (80)
T 1nlw_A 46 KLHIKKLEDSDRKAVHQIDQLQREQRHL 73 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788888888887777765554444433
No 116
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=71.62 E-value=5.2 Score=29.45 Aligned_cols=29 Identities=34% Similarity=0.441 Sum_probs=12.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHH
Q 017286 260 VQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRL 295 (374)
Q Consensus 260 Vq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL 295 (374)
|..|+.|+.+|..++.. |..++.+|+.+|
T Consensus 21 ~eaLk~E~~eLk~k~~~-------L~~~~~el~~~l 49 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEA-------IVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 34444444444444433 344444554444
No 117
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=71.58 E-value=60 Score=29.75 Aligned_cols=68 Identities=10% Similarity=0.014 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 017286 251 QYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCL----EHEVLEREIGRLR 320 (374)
Q Consensus 251 qYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda----~~E~L~~Ei~RLr 320 (374)
..|.+||..+..|+.....+..++..+..+...+..+=..++.+++..+.+. ..+ ..++|.+||+-++
T Consensus 32 ~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l--~~v~~~kE~~aL~kEie~~~ 103 (256)
T 3na7_A 32 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKM--SEIKSERELRSLNIEEDIAK 103 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HccCCHHHHHHHHHHHHHHH
Confidence 6677777777777777777777777777777777777777777776665432 111 3455666665554
No 118
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=70.93 E-value=45 Score=27.80 Aligned_cols=27 Identities=11% Similarity=0.252 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQ 279 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~ 279 (374)
|..|+..++.|...++.|-..|..++.
T Consensus 45 iq~L~~el~~l~~~~~~LE~~l~e~e~ 71 (129)
T 3tnu_B 45 IQRLRAEIDNVKKQCANLQNAIADAEQ 71 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 445556666666666666555555543
No 119
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=70.02 E-value=22 Score=26.44 Aligned_cols=44 Identities=34% Similarity=0.385 Sum_probs=29.8
Q ss_pred HHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 275 EFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQ 325 (374)
Q Consensus 275 ~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~q 325 (374)
..|-+|-..|..||+.|+..|+.-..+ --.|+.|.-.||.+.-+
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~dNS~~-------lskLE~ets~mKevlk~ 49 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELEDNSNH-------LTKLETEASNMKEVLKQ 49 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhHHH-------HHHHHhhhhhHHHHHHH
Confidence 356677888999999999999876653 23344555555555443
No 120
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=69.70 E-value=20 Score=28.69 Aligned_cols=30 Identities=27% Similarity=0.269 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHHHhHHHHHhhHHHHHHH
Q 017286 266 EGTEVSAELEFLNQQNLILSMENKALKQRL 295 (374)
Q Consensus 266 E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL 295 (374)
||..|..+|..++.+...|..||..|+.=+
T Consensus 35 EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~ 64 (79)
T 2zxx_A 35 ENEKLHKEIEQKDSEIARLRKENKDLAEVA 64 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777777777888888776533
No 121
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=69.50 E-value=4 Score=30.37 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=17.3
Q ss_pred HHHHHHHHhHHHHHhhHHHHHHHHHHHH
Q 017286 273 ELEFLNQQNLILSMENKALKQRLESLAQ 300 (374)
Q Consensus 273 ~i~~L~~~~~~L~~EN~~LK~rL~aL~q 300 (374)
.+..|+.....|..+|..|+.+|..|..
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~ 50 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLRE 50 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666667777777766655443
No 122
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=69.48 E-value=2.9 Score=30.93 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHH
Q 017286 250 LQYIAELERNVQSLQAEGTEVSA 272 (374)
Q Consensus 250 lqYI~ELErkVq~LQ~E~a~Ls~ 272 (374)
..||.+||.+|..|+..+..|.+
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~~ 70 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLTS 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 48999999999999988777653
No 123
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.43 E-value=6 Score=39.64 Aligned_cols=55 Identities=16% Similarity=0.305 Sum_probs=29.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 260 VQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRV 321 (374)
Q Consensus 260 Vq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~ 321 (374)
...|...+..|..++..|+++...|..|+..|+.++..+..+ .+.+++|+.+|+.
T Consensus 37 ~~~l~~~~~dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e-------~~~~~ee~~~l~~ 91 (428)
T 4b4t_K 37 NSALSNVNSDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRE-------LKRAQEEVKRIQS 91 (428)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHTC
T ss_pred hhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHcC
Confidence 345556667777777777777778888887777766554432 3456667666643
No 124
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=69.09 E-value=22 Score=28.72 Aligned_cols=33 Identities=27% Similarity=0.317 Sum_probs=16.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 286 MENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQ 325 (374)
Q Consensus 286 ~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~q 325 (374)
.||..|..+|..+.. .+..|+.|.+.||.+..+
T Consensus 46 ~EN~~Lh~~ie~l~e-------Ei~~lk~en~eL~elae~ 78 (83)
T 1uii_A 46 KENEKLHKEIEQKDN-------EIARLKKENKELAEVAEH 78 (83)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 455555555555433 344555555555555443
No 125
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=68.15 E-value=24 Score=27.68 Aligned_cols=25 Identities=12% Similarity=0.191 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHH
Q 017286 252 YIAELERNVQSLQAEGTEVSAELEF 276 (374)
Q Consensus 252 YI~ELErkVq~LQ~E~a~Ls~~i~~ 276 (374)
.+..||.+|..|+.+++.|..+|+.
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~lad 47 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVAD 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5789999999999999999999864
No 126
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=67.77 E-value=6.7 Score=28.86 Aligned_cols=20 Identities=20% Similarity=0.396 Sum_probs=12.0
Q ss_pred hHHHHHhhHHHHHHHHHHHH
Q 017286 281 NLILSMENKALKQRLESLAQ 300 (374)
Q Consensus 281 ~~~L~~EN~~LK~rL~aL~q 300 (374)
...|..||.+||.+++.|..
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~ 40 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVE 40 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666665554
No 127
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=67.74 E-value=42 Score=29.64 Aligned_cols=16 Identities=31% Similarity=0.395 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 017286 306 CLEHEVLEREIGRLRV 321 (374)
Q Consensus 306 da~~E~L~~Ei~RLr~ 321 (374)
.+=+-.|..||.||+.
T Consensus 139 ~~~~~~~~~~~~~~~~ 154 (155)
T 2efr_A 139 LSKNYHLENEVARLKK 154 (155)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHhhc
Confidence 3446678899999975
No 128
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=67.57 E-value=4.8 Score=32.10 Aligned_cols=27 Identities=30% Similarity=0.263 Sum_probs=11.2
Q ss_pred hhHHHHHHHHHHHHHhHHHHHhhHHHH
Q 017286 266 EGTEVSAELEFLNQQNLILSMENKALK 292 (374)
Q Consensus 266 E~a~Ls~~i~~L~~~~~~L~~EN~~LK 292 (374)
|+..|+.+|..|...+..|..||+-||
T Consensus 16 EVevLKe~I~EL~e~~~qLE~EN~~Lk 42 (78)
T 1dip_A 16 EVEILKEQIRELVEKNSQLERENTLLK 42 (78)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444333
No 129
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=67.54 E-value=54 Score=27.43 Aligned_cols=64 Identities=19% Similarity=0.298 Sum_probs=42.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHH
Q 017286 261 QSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQ-LIKCLE--HEVLEREIGRLRVVYQ 324 (374)
Q Consensus 261 q~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~-~lkda~--~E~L~~Ei~RLr~l~~ 324 (374)
+++++-...+.+--..|++....|......+++..+.|.+-+ +..+.+ +-.|+.||-|||.|..
T Consensus 41 qaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kkl~~ 107 (114)
T 2xzr_A 41 QSIEKNSKAIAANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIKKLIK 107 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhchHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 334433344444445677778888888888888888887653 333333 3457899999998864
No 130
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=67.23 E-value=62 Score=28.50 Aligned_cols=18 Identities=28% Similarity=0.165 Sum_probs=10.0
Q ss_pred HHhhHHHHHHHHHHHHHh
Q 017286 264 QAEGTEVSAELEFLNQQN 281 (374)
Q Consensus 264 Q~E~a~Ls~~i~~L~~~~ 281 (374)
|.|++.|.+++..+++..
T Consensus 59 QKEi~~Lrae~~~~QRn~ 76 (167)
T 4gkw_A 59 QKEIGKLRAELGTAQRNL 76 (167)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhH
Confidence 345566666666665543
No 131
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=67.22 E-value=21 Score=26.19 Aligned_cols=36 Identities=28% Similarity=0.314 Sum_probs=15.6
Q ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 277 LNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRL 319 (374)
Q Consensus 277 L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RL 319 (374)
|+.+...|+..|..|-.=|....+ ..+.|+.||++|
T Consensus 14 l~~~l~~L~~rN~rL~~~L~~AR~-------el~~Lkeele~L 49 (51)
T 3m91_A 14 LEARIDSLAARNSKLMETLKEARQ-------QLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHh
Confidence 333334444444444443333333 234455555554
No 132
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=66.79 E-value=11 Score=30.05 Aligned_cols=16 Identities=31% Similarity=0.461 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHh
Q 017286 251 QYIAELERNVQSLQAE 266 (374)
Q Consensus 251 qYI~ELErkVq~LQ~E 266 (374)
.||.+|+.+++.|+.+
T Consensus 52 ~YI~~L~~~~~~l~~~ 67 (88)
T 1nkp_A 52 AYILSVQAEEQKLISE 67 (88)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555444443
No 133
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=66.55 E-value=59 Score=27.47 Aligned_cols=50 Identities=18% Similarity=0.216 Sum_probs=36.4
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHH
Q 017286 231 DTETKRAKQQFAQRSRVRKLQYIAELERNVQSLQA---EGTEVSAELEFLNQQ 280 (374)
Q Consensus 231 ~~DpKRaKRqSAqRSR~RKlqYI~ELErkVq~LQ~---E~a~Ls~~i~~L~~~ 280 (374)
..|--.++=.+|...=..|+.-|.+|...+..+.. ++.-|.+++.....+
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~D 77 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKAD 77 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666677688888888899999999988887776 555566666555443
No 134
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=66.46 E-value=27 Score=35.87 Aligned_cols=77 Identities=16% Similarity=0.162 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHH-----hHHHHH-----hh-HHHHHH--------HHHHHHHHHHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQQ-----NLILSM-----EN-KALKQR--------LESLAQEQLIKCLEHEVLE 313 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~~-----~~~L~~-----EN-~~LK~r--------L~aL~q~~~lkda~~E~L~ 313 (374)
|.+||..|+.|.+-.++...-|..|+.. ...-.+ += +.|.+. +...+..-+......+.+.
T Consensus 97 l~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~~~~n~~~~~~s~~mle~~~~~~~~~~~~~~~~~i~~l~~~~~~~~ 176 (461)
T 3ghg_B 97 VDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQVKDNENVVNEYSSELEKHQLYIDETVNSNIPTNLRVLRSILENLR 176 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHTHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHH
Confidence 6778888888877776666666666421 111111 10 122111 1123333333445678899
Q ss_pred HHHHHHHHHHHHhhhc
Q 017286 314 REIGRLRVVYQQQQQQ 329 (374)
Q Consensus 314 ~Ei~RLr~l~~qqq~~ 329 (374)
..|+.|+....+|...
T Consensus 177 ~~i~~l~~~~~~~~~~ 192 (461)
T 3ghg_B 177 SKIQKLESDVSAQMEY 192 (461)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhh
Confidence 9999999999988663
No 135
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=66.44 E-value=13 Score=25.76 Aligned_cols=16 Identities=19% Similarity=0.179 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 017286 309 HEVLEREIGRLRVVYQ 324 (374)
Q Consensus 309 ~E~L~~Ei~RLr~l~~ 324 (374)
+..|+.||.|||.+.-
T Consensus 17 ~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 17 LWHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhc
Confidence 5567788888887754
No 136
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=65.52 E-value=25 Score=27.23 Aligned_cols=61 Identities=18% Similarity=0.341 Sum_probs=37.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHH
Q 017286 232 TETKRAKQQFAQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQE 301 (374)
Q Consensus 232 ~DpKRaKRqSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~ 301 (374)
.++...||..--|.=.|- |=.--|..|..|+.++..|. ..+..|..||..|+..|..|..+
T Consensus 5 ~~~~~~kR~~qNR~AQRa--fReRK~~~i~~LE~~v~~le-------~~~~~l~~en~~Lr~~i~~L~~E 65 (70)
T 1gd2_E 5 DQEPSSKRKAQNRAAQRA--FRKRKEDHLKALETQVVTLK-------ELHSSTTLENDQLRQKVRQLEEE 65 (70)
T ss_dssp CCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHTTHHHHHHHH
T ss_pred ccchHhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445565544444443 44555666666666655554 44555778888888888777654
No 137
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=64.89 E-value=56 Score=32.86 Aligned_cols=51 Identities=10% Similarity=0.017 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHH---hhHHHHHHHHHHHH
Q 017286 250 LQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSM---ENKALKQRLESLAQ 300 (374)
Q Consensus 250 lqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~---EN~~LK~rL~aL~q 300 (374)
+..|.+|..+-..|+.+...|.++...+.++-..+.. +-.+|+.++..|..
T Consensus 30 ~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~ 83 (455)
T 2dq0_A 30 VDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVK 83 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 4556666666666666666666666666555443322 12345555544444
No 138
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=64.04 E-value=55 Score=26.26 Aligned_cols=51 Identities=8% Similarity=0.063 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHH
Q 017286 246 RVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLE 296 (374)
Q Consensus 246 R~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~ 296 (374)
+..-+.-..+||.++..++.+...+-.+|..|++....|..+=-.+..+|.
T Consensus 18 ~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~ 68 (101)
T 3u59_A 18 KENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVK 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555555555554444444444444444444433333333333
No 139
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=63.96 E-value=16 Score=34.57 Aligned_cols=50 Identities=22% Similarity=0.386 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHH
Q 017286 251 QYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQ 300 (374)
Q Consensus 251 qYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q 300 (374)
..|.||..||+.|+.--..+..+|+-|+++-..|..+-..++.||+-++.
T Consensus 177 sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~qE 226 (242)
T 3uux_B 177 SEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLEE 226 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777777777777777777777665554
No 140
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=63.57 E-value=28 Score=35.74 Aligned_cols=46 Identities=20% Similarity=0.303 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH-----------hHHHHHhhHHHHHHHHHHHH
Q 017286 255 ELERNVQSLQAEGTEVSAELEFLNQQ-----------NLILSMENKALKQRLESLAQ 300 (374)
Q Consensus 255 ELErkVq~LQ~E~a~Ls~~i~~L~~~-----------~~~L~~EN~~LK~rL~aL~q 300 (374)
+|..+++.|+++...++.+|..+... ...|..|=++||.+|+.|+.
T Consensus 81 ~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~ 137 (501)
T 1wle_A 81 QLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYP 137 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888888888888876533 23445555555555555443
No 141
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=63.52 E-value=37 Score=33.16 Aligned_cols=19 Identities=16% Similarity=0.202 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHhhHHHH
Q 017286 253 IAELERNVQSLQAEGTEVS 271 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls 271 (374)
-.+||..|..++.+..++.
T Consensus 369 ~~~le~~~~~~~~~~~~~~ 387 (487)
T 3oja_A 369 KKALDEQVSNGRRAHAELD 387 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 3444444444443333333
No 142
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=63.34 E-value=8.2 Score=36.72 Aligned_cols=35 Identities=20% Similarity=0.224 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 017286 290 ALKQRLESLAQEQL-IKCLEHEVLEREIGRLRVVYQQ 325 (374)
Q Consensus 290 ~LK~rL~aL~q~~~-lkda~~E~L~~Ei~RLr~l~~q 325 (374)
+|+.++..|..+.. |+++ ...+++||.+||.-..+
T Consensus 58 eL~~ql~~L~arNe~L~~~-Lk~ar~El~~LkeEler 93 (251)
T 3m9b_A 58 QLEARIDSLAARNSKLMET-LKEARQQLLALREEVDR 93 (251)
T ss_dssp HHHHHHHHHTTTHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 44444444433322 3332 33455555555554433
No 143
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=63.29 E-value=58 Score=26.30 Aligned_cols=61 Identities=15% Similarity=0.089 Sum_probs=25.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 257 ERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIG 317 (374)
Q Consensus 257 ErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~ 317 (374)
|.+...+..|+++|.-+|..|+.+...+...=...+..|..-+....-.++...+|.+=|+
T Consensus 36 e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriq 96 (101)
T 3u1c_A 36 EERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444443333333333344444444444444444555554443
No 144
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=63.25 E-value=33 Score=27.18 Aligned_cols=59 Identities=17% Similarity=0.226 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 266 EGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQ 324 (374)
Q Consensus 266 E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~ 324 (374)
|+..|..+|..+..++..|..|-..++.-++.+...-----..-..++.||..||..+.
T Consensus 1 Ei~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD 59 (86)
T 3swk_A 1 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVD 59 (86)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 34556666666655555555555555544444443333333445667777777776543
No 145
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=63.13 E-value=15 Score=25.07 Aligned_cols=15 Identities=20% Similarity=-0.022 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHH
Q 017286 309 HEVLEREIGRLRVVY 323 (374)
Q Consensus 309 ~E~L~~Ei~RLr~l~ 323 (374)
+..|+.||.|||.++
T Consensus 16 ~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 16 IYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHh
Confidence 567788888888775
No 146
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=62.87 E-value=77 Score=27.91 Aligned_cols=36 Identities=22% Similarity=0.207 Sum_probs=18.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 285 SMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLR 320 (374)
Q Consensus 285 ~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr 320 (374)
..+=+.|+.+|+..+.-+-+-+---..|.++|.+|-
T Consensus 76 EeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lE 111 (155)
T 2efr_A 76 EEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLE 111 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444454444444444444455666666664
No 147
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=62.54 E-value=69 Score=26.90 Aligned_cols=49 Identities=22% Similarity=0.199 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHH
Q 017286 252 YIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQ 300 (374)
Q Consensus 252 YI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q 300 (374)
-|..|++.|..|+.+...|...|-.|.+.+..|.-.....-.=|+.|+.
T Consensus 36 ~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~ 84 (111)
T 2v66_B 36 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQ 84 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHH
Confidence 3677888888888888888888888888888887777776666666654
No 148
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=62.48 E-value=17 Score=31.51 Aligned_cols=42 Identities=19% Similarity=0.267 Sum_probs=26.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 284 LSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQ 325 (374)
Q Consensus 284 L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~q 325 (374)
+...|..|+.++++|+....+-..-...=++=+-.|+..|++
T Consensus 53 ~~~~~d~L~lQ~esmeaalkmEr~~~~eEKrkLAqLQ~AY~~ 94 (130)
T 3cl3_D 53 HSVQVDQLRMQGQSVEAALRMERQAASEEKRKLAQLQVAYHQ 94 (130)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777766655555555555556666666665
No 149
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=62.21 E-value=13 Score=25.54 Aligned_cols=27 Identities=7% Similarity=0.176 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQ 279 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~ 279 (374)
+..||.||+.|-.+...|..+|+.|..
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 568999999999999999888888753
No 150
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=62.17 E-value=56 Score=33.50 Aligned_cols=32 Identities=13% Similarity=0.076 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 017286 250 LQYIAELERNVQSLQAEGTEVSAELEFLNQQN 281 (374)
Q Consensus 250 lqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~ 281 (374)
+..|.+|..+-..|+.+..+|.++...+.++-
T Consensus 32 ~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i 63 (485)
T 3qne_A 32 VDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEI 63 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555565555555555555555555555443
No 151
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=62.04 E-value=11 Score=25.88 Aligned_cols=17 Identities=12% Similarity=0.286 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 017286 308 EHEVLEREIGRLRVVYQ 324 (374)
Q Consensus 308 ~~E~L~~Ei~RLr~l~~ 324 (374)
.+..|..||.|||.++.
T Consensus 16 ~~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 16 KGHHICNELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred ccHHHHHHHHHHHHHhc
Confidence 36678889999998754
No 152
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=61.91 E-value=38 Score=28.00 Aligned_cols=56 Identities=16% Similarity=0.186 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 017286 251 QYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCL 307 (374)
Q Consensus 251 qYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda 307 (374)
.-|..||.++.....|...|..+++.-...+.....+++.|...|+.|.. .+|-+|
T Consensus 12 e~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTa-sLFeEA 67 (97)
T 2eqb_B 12 EDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTA-SLFDEA 67 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 34678888999999999999999999989999999999999999999875 455555
No 153
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=60.79 E-value=17 Score=24.92 Aligned_cols=16 Identities=19% Similarity=0.206 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 017286 308 EHEVLEREIGRLRVVY 323 (374)
Q Consensus 308 ~~E~L~~Ei~RLr~l~ 323 (374)
.+..|..||.|||.++
T Consensus 16 ~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 16 ANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHh
Confidence 3667888888888875
No 154
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=60.61 E-value=1e+02 Score=30.08 Aligned_cols=9 Identities=33% Similarity=0.494 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 017286 255 ELERNVQSL 263 (374)
Q Consensus 255 ELErkVq~L 263 (374)
+++.+++.+
T Consensus 385 ~~~~~~~~~ 393 (487)
T 3oja_A 385 ELDGTLQQA 393 (487)
T ss_dssp HHHHHHHHH
T ss_pred hhhhhHHHh
Confidence 333333333
No 155
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=60.43 E-value=4 Score=34.53 Aligned_cols=22 Identities=18% Similarity=0.385 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAEL 274 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i 274 (374)
++||+.+++.||.||.+|+.+|
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl 31 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKV 31 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555544
No 156
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=60.22 E-value=9.6 Score=28.00 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=14.7
Q ss_pred HHHHHHHhHHHHHhhHHHHHHHHHHHH
Q 017286 274 LEFLNQQNLILSMENKALKQRLESLAQ 300 (374)
Q Consensus 274 i~~L~~~~~~L~~EN~~LK~rL~aL~q 300 (374)
|..|+.+...|..||..|+.++..|.+
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444556666666666655543
No 157
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=60.00 E-value=67 Score=25.90 Aligned_cols=79 Identities=19% Similarity=0.192 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 242 AQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLR 320 (374)
Q Consensus 242 AqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr 320 (374)
...-..+-++.+.+||+.-..|..++..+..+...|.++-...-.+=+.++.++-.+..+..--+........-+.+||
T Consensus 16 l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL~ 94 (96)
T 3q8t_A 16 LALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKLK 94 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344445567777777777777777777777777777766666666667776666666665555555555555555554
No 158
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=59.83 E-value=73 Score=31.61 Aligned_cols=31 Identities=29% Similarity=0.397 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 017286 250 LQYIAELERNVQSLQAEGTEVSAELEFLNQQ 280 (374)
Q Consensus 250 lqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~ 280 (374)
+..|.+|..+-..|+.+...|.++...+.++
T Consensus 27 ~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~ 57 (421)
T 1ses_A 27 LEALLALDREVQELKKRLQEVQTERNQVAKR 57 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777777777777777655
No 159
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=59.82 E-value=29 Score=34.99 Aligned_cols=45 Identities=13% Similarity=0.214 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHH---HhHHHHHhhHHHHHHHHHHHH
Q 017286 256 LERNVQSLQAEGTEVSAELEFLNQ---QNLILSMENKALKQRLESLAQ 300 (374)
Q Consensus 256 LErkVq~LQ~E~a~Ls~~i~~L~~---~~~~L~~EN~~LK~rL~aL~q 300 (374)
|..+++.|+++...++.+|..+.. +...|..|=++||.+|+.|+.
T Consensus 43 ~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 90 (455)
T 2dq0_A 43 KLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELEN 90 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555432 234555666666666665554
No 160
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=59.66 E-value=16 Score=27.01 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcC
Q 017286 306 CLEHEVLEREIGRLRVVYQQQQQQQ 330 (374)
Q Consensus 306 da~~E~L~~Ei~RLr~l~~qqq~~~ 330 (374)
..+..++++||+-||..|+.+.|+.
T Consensus 20 ~~Ld~~Me~Ei~elr~RY~~KRqPI 44 (51)
T 2jo8_A 20 LALDPMMEQEIEEIRQKYQSKRQPI 44 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHHHHHhHhhH
Confidence 3456789999999999999988863
No 161
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=58.43 E-value=32 Score=35.28 Aligned_cols=46 Identities=13% Similarity=0.101 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH---hHHHHHhhHHHHHHHHHHHH
Q 017286 255 ELERNVQSLQAEGTEVSAELEFLNQQ---NLILSMENKALKQRLESLAQ 300 (374)
Q Consensus 255 ELErkVq~LQ~E~a~Ls~~i~~L~~~---~~~L~~EN~~LK~rL~aL~q 300 (374)
+|..+++.|+++...++.+|..+... ...|..|=++||.+|+.|+.
T Consensus 44 ~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~ 92 (485)
T 3qne_A 44 KLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIE 92 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888888888777442 33455555555555555544
No 162
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=58.18 E-value=6.3 Score=37.76 Aligned_cols=12 Identities=8% Similarity=0.260 Sum_probs=6.5
Q ss_pred cCCCcchhhhcC
Q 017286 70 EEQPSWLDDLLN 81 (374)
Q Consensus 70 eeqPsWlDDlL~ 81 (374)
++.|.=.|||++
T Consensus 123 ~~~P~Twdel~~ 134 (449)
T 3iot_A 123 PNPPKTWEEIPA 134 (449)
T ss_dssp SSCCSBGGGHHH
T ss_pred ccCCCCHHHHHH
Confidence 445533467765
No 163
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=57.06 E-value=3 Score=36.89 Aligned_cols=41 Identities=24% Similarity=0.263 Sum_probs=10.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 283 ILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVY 323 (374)
Q Consensus 283 ~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~ 323 (374)
.|..+..+|...++.|+.+.+|.++....|.+++.-.|...
T Consensus 91 ~l~~~~~~LeAE~aKLeEekQIseASRqgLrRDLeASReAK 131 (146)
T 2xnx_M 91 QLSSEKEQLTIEKAKLEEEKQISDASRQSLRRDLDASREAK 131 (146)
T ss_dssp HHHHHHHHHHHHHHHHGGGTTTC------------------
T ss_pred HHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555555555555555555554444443
No 164
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=56.87 E-value=21 Score=24.72 Aligned_cols=16 Identities=38% Similarity=0.304 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 017286 308 EHEVLEREIGRLRVVY 323 (374)
Q Consensus 308 ~~E~L~~Ei~RLr~l~ 323 (374)
.+..|+.||.|||.+.
T Consensus 16 ~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 16 EVWHLENEVARLEKEN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHh
Confidence 3556777888888765
No 165
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=56.86 E-value=73 Score=25.78 Aligned_cols=36 Identities=11% Similarity=0.190 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 290 ALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQ 325 (374)
Q Consensus 290 ~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~q 325 (374)
.|..=|..+-+--+--.+--..|..||++||..|-+
T Consensus 48 ~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~Ke~Yl~ 83 (93)
T 3t98_B 48 DLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLS 83 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444433334445566777888888887755
No 166
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=56.77 E-value=13 Score=32.49 Aligned_cols=33 Identities=15% Similarity=0.141 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 291 LKQRLESLAQEQLIKCLEHEVLEREIGRLRVVY 323 (374)
Q Consensus 291 LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~ 323 (374)
++.|..-|+.+-.=++++.+.|...+..||.++
T Consensus 101 ~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK~v~ 133 (135)
T 2e7s_A 101 IEILNKRLTEQLREKDMLLDTLTLQLKNLKKVM 133 (135)
T ss_dssp HHHHHHHHHHTTTHHHHCC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555555554455555666666666666554
No 167
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=56.50 E-value=10 Score=29.37 Aligned_cols=6 Identities=17% Similarity=0.252 Sum_probs=2.5
Q ss_pred HHHHHH
Q 017286 253 IAELER 258 (374)
Q Consensus 253 I~ELEr 258 (374)
+.+|-.
T Consensus 21 f~~Lr~ 26 (83)
T 1nkp_B 21 FHSLRD 26 (83)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 344433
No 168
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=55.58 E-value=67 Score=32.35 Aligned_cols=12 Identities=17% Similarity=0.080 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHH
Q 017286 308 EHEVLEREIGRL 319 (374)
Q Consensus 308 ~~E~L~~Ei~RL 319 (374)
..+.+..||+||
T Consensus 142 ~l~~q~~kiqRL 153 (390)
T 1deq_A 142 NVRDQLVDMKRL 153 (390)
T ss_pred HHHHHHHHHHHH
Confidence 344555566665
No 169
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=55.01 E-value=95 Score=26.14 Aligned_cols=64 Identities=14% Similarity=0.127 Sum_probs=31.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHhHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 258 RNVQSLQAEGTEVSAELEFLNQQNLILSM----ENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRV 321 (374)
Q Consensus 258 rkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~----EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~ 321 (374)
..|+.||++...|..+|+.+......|.. -+.+-|.+++.|....+--+.+-..|..-...++.
T Consensus 6 ~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~ 73 (112)
T 1x79_B 6 DQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKR 73 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666665555544432 23334455555554444444444444433333333
No 170
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.69 E-value=7.9 Score=38.87 Aligned_cols=9 Identities=22% Similarity=0.176 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 017286 312 LEREIGRLR 320 (374)
Q Consensus 312 L~~Ei~RLr 320 (374)
++.||.+++
T Consensus 65 ~~~~i~~~~ 73 (434)
T 4b4t_M 65 NKEKIKNNR 73 (434)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhcc
Confidence 344444443
No 171
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=54.68 E-value=49 Score=28.13 Aligned_cols=59 Identities=22% Similarity=0.214 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhHHHHHHHH--HHHHHhHHHHHhhHHHHH
Q 017286 235 KRAKQQFAQRSR---VRKLQYIAELERNVQSLQAEGTEVSAELE--FLNQQNLILSMENKALKQ 293 (374)
Q Consensus 235 KRaKRqSAqRSR---~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~--~L~~~~~~L~~EN~~LK~ 293 (374)
-|.++...+-.| .+|+|-+.|+|++|..+..+--.+..++. ++++...+=...|+.++.
T Consensus 42 eRLr~~~d~~~K~HE~kklqLkse~e~E~ae~k~KYD~~lqe~ese~~~kkK~le~~~~kV~mN 105 (115)
T 3vem_A 42 EKLRRESENSKKTFEEKKSILKAELERKMAEVQAEFRRKFHEVEAEHNTRTTKIEKDKNLVIMN 105 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467775554443 68999999999998887777666655554 444444433444444433
No 172
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=54.60 E-value=48 Score=25.96 Aligned_cols=21 Identities=24% Similarity=0.219 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHH
Q 017286 255 ELERNVQSLQAEGTEVSAELE 275 (374)
Q Consensus 255 ELErkVq~LQ~E~a~Ls~~i~ 275 (374)
+||.++..|+..++-+-..|.
T Consensus 11 ~le~Ri~~LE~klAfqE~tIe 31 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALT 31 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555544444433333333
No 173
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=54.30 E-value=24 Score=28.53 Aligned_cols=29 Identities=28% Similarity=0.305 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHHHHhHHHHHhhHHHHHH
Q 017286 266 EGTEVSAELEFLNQQNLILSMENKALKQR 294 (374)
Q Consensus 266 E~a~Ls~~i~~L~~~~~~L~~EN~~LK~r 294 (374)
||..|..+|..|+.+...|..||.+|+.-
T Consensus 47 EN~~Lh~~ie~l~eEi~~lk~en~eL~el 75 (83)
T 1uii_A 47 ENEKLHKEIEQKDNEIARLKKENKELAEV 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78889999999888888888888877753
No 174
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=54.28 E-value=78 Score=24.95 Aligned_cols=45 Identities=20% Similarity=0.232 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHH
Q 017286 254 AELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESL 298 (374)
Q Consensus 254 ~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL 298 (374)
.+||.+...|..|...|..+++-++..+..|.....+|-.+|..|
T Consensus 38 kele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el 82 (89)
T 3bas_A 38 KELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555544444444444443
No 175
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=54.08 E-value=40 Score=28.53 Aligned_cols=48 Identities=15% Similarity=0.134 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHhHHHHHhhHHHHHHHHH
Q 017286 250 LQYIAELERNVQSLQAEG----TEVSAELEFLNQQNLILSMENKALKQRLES 297 (374)
Q Consensus 250 lqYI~ELErkVq~LQ~E~----a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~a 297 (374)
+.|+.+.+..+..+-... ..|..+|..|..+...|..|...|+.++..
T Consensus 6 ~~~~~~~~~~l~~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~ 57 (171)
T 2zvf_A 6 IEAVEEMERLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIAD 57 (171)
T ss_dssp THHHHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666554433 355566666555555555554555444443
No 176
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=54.03 E-value=10 Score=28.36 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHH
Q 017286 246 RVRKLQYIAELERNVQSLQAEGTEVS 271 (374)
Q Consensus 246 R~RKlqYI~ELErkVq~LQ~E~a~Ls 271 (374)
.+.+..||..||.+|..|+..+..|.
T Consensus 53 ~~~~~~~~~~L~~ri~~LE~~l~~l~ 78 (81)
T 1hwt_C 53 ELLKDNELKKLRERVKSLEKTLSKVH 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC----
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHhc
Confidence 34466899999999999998877664
No 177
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=53.93 E-value=1.2e+02 Score=31.78 Aligned_cols=36 Identities=17% Similarity=0.104 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017286 291 LKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQQ 326 (374)
Q Consensus 291 LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~qq 326 (374)
||++|..--+...+-....+.+..||+||=+-...|
T Consensus 122 LKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiq 157 (562)
T 3ghg_A 122 LKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIK 157 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333334566667777776554443
No 178
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=53.56 E-value=1.9e+02 Score=29.06 Aligned_cols=17 Identities=18% Similarity=0.114 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHh
Q 017286 310 EVLEREIGRLRVVYQQQ 326 (374)
Q Consensus 310 E~L~~Ei~RLr~l~~qq 326 (374)
+.+...|+.|+..+.++
T Consensus 115 ~~~~~~i~~l~~~i~~l 131 (409)
T 1m1j_C 115 IMNSNKITQLKQKIAQL 131 (409)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHH
Confidence 34555666666555443
No 179
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=53.38 E-value=23 Score=23.61 Aligned_cols=13 Identities=38% Similarity=0.394 Sum_probs=5.5
Q ss_pred hhHHHHHHHHHHH
Q 017286 287 ENKALKQRLESLA 299 (374)
Q Consensus 287 EN~~LK~rL~aL~ 299 (374)
|-.+||..|.+|.
T Consensus 17 eiaalkfeiaalk 29 (33)
T 4dzn_A 17 EIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444443
No 180
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=53.31 E-value=16 Score=34.10 Aligned_cols=55 Identities=16% Similarity=0.146 Sum_probs=28.1
Q ss_pred hhhHHHH-HHH----HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHH
Q 017286 233 ETKRAKQ-QFA----QRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQE 301 (374)
Q Consensus 233 DpKRaKR-qSA----qRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~ 301 (374)
++||.+| -|| .|-|+=|+. .+..+..+..++..++..|+ .||++|+.+|+.|..+
T Consensus 118 ~~~Rt~~iLSalINF~~FRE~~~~-------~~~e~~~~~e~~~~~i~ql~-------~En~~le~~Ie~Lk~e 177 (250)
T 2ve7_C 118 KAKRTSRFLSGIINFIHFREACRE-------TYMEFLWQYKSSADKMQQLN-------AAHQEALMKLERLEKE 177 (250)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHTTHHHHHHHHHH-------HHHHHHHHSCC-----
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 4899998 233 233333333 23444455666666666654 4466677777776654
No 181
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=53.30 E-value=40 Score=33.56 Aligned_cols=33 Identities=24% Similarity=0.195 Sum_probs=20.0
Q ss_pred HhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHH
Q 017286 265 AEGTEVSAELEFLNQQNLILSMENKALKQRLES 297 (374)
Q Consensus 265 ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~a 297 (374)
+|..+|..++..|.+....|..+++.++..++.
T Consensus 3 ~~~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~ 35 (412)
T 3u06_A 3 SMHAALSTEVVHLRQRTEELLRCNEQQAAELET 35 (412)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777766666666666555544443
No 182
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=53.13 E-value=12 Score=28.79 Aligned_cols=46 Identities=20% Similarity=0.343 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHH
Q 017286 251 QYIAELERNVQSLQ----AEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQ 300 (374)
Q Consensus 251 qYI~ELErkVq~LQ----~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q 300 (374)
..+.+|-.-|=.+. ..++.|..-+.++.. |..++..|+.+++.|.+
T Consensus 29 ~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~----L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 29 DSFHSLRDSVPSLQGEKASRAQILDKATEYIQY----MRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHh
Confidence 34566666555443 356666666666532 45555555555555554
No 183
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=53.11 E-value=52 Score=27.44 Aligned_cols=20 Identities=25% Similarity=0.323 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHhhHHHHHHH
Q 017286 255 ELERNVQSLQAEGTEVSAEL 274 (374)
Q Consensus 255 ELErkVq~LQ~E~a~Ls~~i 274 (374)
..|..|..|+.++.+|..+|
T Consensus 15 ~~e~e~~~l~~~~~el~~~l 34 (125)
T 1joc_A 15 KGEGEIEKLQTKVLELQRKL 34 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHH
Confidence 33334444444444444333
No 184
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=53.06 E-value=96 Score=25.58 Aligned_cols=18 Identities=22% Similarity=0.352 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHhhHHHHH
Q 017286 255 ELERNVQSLQAEGTEVSA 272 (374)
Q Consensus 255 ELErkVq~LQ~E~a~Ls~ 272 (374)
+.|.....++.|+..|++
T Consensus 44 ~aE~~~~~ie~ElEeLTa 61 (97)
T 2eqb_B 44 KAEEEADKLNKEVEDLTA 61 (97)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555566666666665
No 185
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=52.51 E-value=83 Score=27.74 Aligned_cols=46 Identities=15% Similarity=0.076 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHh-----HHHHHhhHHHHHHHHHHHHH
Q 017286 256 LERNVQSLQAEGTEVSAELEFLNQQN-----LILSMENKALKQRLESLAQE 301 (374)
Q Consensus 256 LErkVq~LQ~E~a~Ls~~i~~L~~~~-----~~L~~EN~~LK~rL~aL~q~ 301 (374)
.+.+++.|+.+...|..+...++... ..|..+-..|+..|.+.+..
T Consensus 31 ~~a~~~~le~e~~kl~~e~~i~eas~~~~~~~~le~~~~~l~rdleasr~a 81 (146)
T 2xnx_M 31 HRATALEKELEEKKKALELAIDQASQDYNRANVLEKELEAITREQEINRNL 81 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHTTTTTTHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHH
Confidence 44445555555555544444443322 23333334444444444433
No 186
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=51.92 E-value=1.1e+02 Score=25.84 Aligned_cols=62 Identities=16% Similarity=0.117 Sum_probs=28.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 259 NVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVY 323 (374)
Q Consensus 259 kVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~ 323 (374)
-|..|+.|+..|+.+|..+..+.... =..|+-+|..|+.+......+......|.++||.-.
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~E~q~~---v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~ 77 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKTESQRV---VLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAEL 77 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555553222111 123455555555554444444333444444444433
No 187
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=51.41 E-value=75 Score=23.89 Aligned_cols=9 Identities=11% Similarity=0.449 Sum_probs=3.4
Q ss_pred hhHHHHHHH
Q 017286 287 ENKALKQRL 295 (374)
Q Consensus 287 EN~~LK~rL 295 (374)
|-.+|+.+|
T Consensus 57 Ei~elrr~i 65 (77)
T 3trt_A 57 ESTEYRRQV 65 (77)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 188
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=51.12 E-value=23 Score=28.14 Aligned_cols=13 Identities=23% Similarity=0.427 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHH
Q 017286 308 EHEVLEREIGRLR 320 (374)
Q Consensus 308 ~~E~L~~Ei~RLr 320 (374)
.++.|+.+|+.|+
T Consensus 74 ~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 74 RREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhh
Confidence 4555555555553
No 189
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=51.09 E-value=1.3e+02 Score=30.16 Aligned_cols=20 Identities=15% Similarity=-0.117 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 017286 306 CLEHEVLEREIGRLRVVYQQ 325 (374)
Q Consensus 306 da~~E~L~~Ei~RLr~l~~q 325 (374)
+++.-....+|+.|+.++..
T Consensus 97 e~~~~~~~~~i~~l~~~~~~ 116 (409)
T 1m1j_C 97 ENTILAHENTIQQLTDMHIM 116 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcchHHHHHHHHHHHHh
Confidence 33333444555555554444
No 190
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=51.04 E-value=31 Score=27.11 Aligned_cols=32 Identities=22% Similarity=0.188 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 291 LKQRLESLAQEQLIKCLEHEVLEREIGRLRVV 322 (374)
Q Consensus 291 LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l 322 (374)
...+|..|+.+-.-||.+...|+.|+..+|.+
T Consensus 38 kd~~I~eLEk~L~ekd~eI~~LqseLDKfrSV 69 (72)
T 3nmd_A 38 RDALIDELELELDQKDELIQMLQNELDKYRSV 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34456666666666666666777777666543
No 191
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=50.93 E-value=91 Score=24.69 Aligned_cols=32 Identities=13% Similarity=0.071 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQQNLIL 284 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L 284 (374)
+.+++.++..|+.+...+..++..+......|
T Consensus 12 ~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 12 KTTIEEERNEITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555555555555555444444
No 192
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=50.83 E-value=71 Score=23.47 Aligned_cols=27 Identities=15% Similarity=0.186 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQ 279 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~ 279 (374)
+..||.++..++..++.+..+|..+.-
T Consensus 7 ~~~le~k~~~~e~iv~~l~~~v~~~~~ 33 (66)
T 3m0a_A 7 CESLEKKTATFENIVCVLNREVERVAM 33 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 445677777777766666665555433
No 193
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=50.43 E-value=1.5e+02 Score=30.34 Aligned_cols=71 Identities=14% Similarity=0.153 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHH-----HHHHHHhHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAEL-----EFLNQQNLILSMENKALKQRLESLA-QEQLIKCLEHEVLEREIGRLRVVYQ 324 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i-----~~L~~~~~~L~~EN~~LK~rL~aL~-q~~~lkda~~E~L~~Ei~RLr~l~~ 324 (374)
|.+||.+|+.|.+..++-..-| .+-..+.....+++ .+++-...|+ +++.+++.++..+...|..|+.++.
T Consensus 102 LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n-~~~~~~~~~e~~~~~i~~~~~~~~~~~i~~L~~~~~ 178 (464)
T 1m1j_B 102 LRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDI-ILSEYNTEMELHYNYIKDNLDNNIPSSLRVLRAVID 178 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhh-HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 7788888888865544422222 22223334444454 3444444444 4466777766555555555544443
No 194
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=50.41 E-value=36 Score=33.03 Aligned_cols=76 Identities=13% Similarity=0.079 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 246 RVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQ 324 (374)
Q Consensus 246 R~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~ 324 (374)
+.--+.+|..|-..++..|.++..+...|..+.. .|......|+.....|....--+.+..+.|++||+.|+.-+.
T Consensus 118 ~~~l~~~L~~L~~~i~~~q~~~~~~~~~L~~F~~---~l~~d~~~f~~~~~~l~~~L~~~~~~I~~Lq~eI~~l~~~I~ 193 (346)
T 2nrj_A 118 GETLKEGITDLRGEIQQNQKYAQQLIEELTKLRD---SIGHDVRAFGSNKELLQSILKNQGADVDADQKRLEEVLGSVN 193 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhHhhHHhHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence 3444567778888888888888777777776644 455556667777777766666666778899999999988665
No 195
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=50.19 E-value=30 Score=32.02 Aligned_cols=42 Identities=24% Similarity=0.267 Sum_probs=34.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHH
Q 017286 260 VQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQE 301 (374)
Q Consensus 260 Vq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~ 301 (374)
+|.|+++-.+.-.+-..|+.....|.+||..|+.+|+.|+..
T Consensus 32 ~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLeGn 73 (206)
T 3oa7_A 32 LQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEGN 73 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccCC
Confidence 466777777777788888888888999999999999988864
No 196
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=50.13 E-value=47 Score=32.88 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=12.7
Q ss_pred HHHHHHHHhHHHHHhhHHHHHHHHHHHH
Q 017286 273 ELEFLNQQNLILSMENKALKQRLESLAQ 300 (374)
Q Consensus 273 ~i~~L~~~~~~L~~EN~~LK~rL~aL~q 300 (374)
+|..|.++...|..+..+|...|+.++.
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 31 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTEL 31 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443
No 197
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=50.09 E-value=1.2e+02 Score=25.83 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 017286 254 AELERNVQSLQAEGTEVSAELEFLNQQN 281 (374)
Q Consensus 254 ~ELErkVq~LQ~E~a~Ls~~i~~L~~~~ 281 (374)
.+|+.+++.|..++..|..++.-+.++.
T Consensus 53 ~eL~~~~~~Le~~n~~L~~~lke~~~~~ 80 (155)
T 2oto_A 53 EELEKAKQALEDQRKDLETKLKELQQDY 80 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555554444444
No 198
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=49.88 E-value=1.2e+02 Score=25.81 Aligned_cols=45 Identities=20% Similarity=0.211 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHH
Q 017286 256 LERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQ 300 (374)
Q Consensus 256 LErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q 300 (374)
|......|..+...+.....-|+.....|..+|..|+.++..+..
T Consensus 34 Lk~e~e~l~~~~~~~~~~~~eL~~~~~~Le~~n~~L~~~lke~~~ 78 (155)
T 2oto_A 34 LKARLENAMEVAGRDFKRAEELEKAKQALEDQRKDLETKLKELQQ 78 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333444444445555555555555543
No 199
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=49.77 E-value=22 Score=27.96 Aligned_cols=47 Identities=23% Similarity=0.259 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHH
Q 017286 254 AELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQ 300 (374)
Q Consensus 254 ~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q 300 (374)
++|..+...++..+.-|..-+..-+..+..|+..|+-||..|--|+.
T Consensus 18 eel~~~L~~~~k~~~Hl~~LL~EsEatnarL~eq~~lLK~EIRRlER 64 (71)
T 3bbp_D 18 EELVQKLSSTTKSADHLNGLLRETEATNAILMEQIKLLKSEIRRLER 64 (71)
T ss_dssp -----------CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555555555555555555666666666666655555543
No 200
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=47.89 E-value=17 Score=26.81 Aligned_cols=26 Identities=19% Similarity=0.413 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHH
Q 017286 252 YIAELERNVQSLQAEGTEVSAELEFL 277 (374)
Q Consensus 252 YI~ELErkVq~LQ~E~a~Ls~~i~~L 277 (374)
|+.++...+..|..|+..|..+|..|
T Consensus 28 FLd~v~~~~~~l~~e~~~L~~~~~~l 53 (57)
T 2wuj_A 28 FLAQVRKDYEIVLRKKTELEAKVNEL 53 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555444444443
No 201
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=47.46 E-value=50 Score=24.34 Aligned_cols=28 Identities=4% Similarity=0.049 Sum_probs=18.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHhHHHH
Q 017286 258 RNVQSLQAEGTEVSAELEFLNQQNLILS 285 (374)
Q Consensus 258 rkVq~LQ~E~a~Ls~~i~~L~~~~~~L~ 285 (374)
.+|+.|.+++.+|+.+|..|..+-..|.
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~al~ 31 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANAAR 31 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777777755444443
No 202
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=47.26 E-value=14 Score=32.11 Aligned_cols=48 Identities=15% Similarity=0.164 Sum_probs=31.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 017286 259 NVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCL 307 (374)
Q Consensus 259 kVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda 307 (374)
.+..+..|...|..+++.-...+.....+++.|...|+.|.. .+|-+|
T Consensus 40 ~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTa-sLFeEA 87 (135)
T 2e7s_A 40 ELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTA-SLFDEA 87 (135)
T ss_dssp HTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHH-HHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 333355555555555555555677777788888888888875 445555
No 203
>1m5i_A APC protein; coiled-coil, antitumor protein; 2.00A {Homo sapiens} SCOP: h.4.13.1
Probab=47.20 E-value=1.4e+02 Score=25.70 Aligned_cols=30 Identities=17% Similarity=0.316 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 296 ESLAQEQLIKCLEHEVLEREIGRLRVVYQQ 325 (374)
Q Consensus 296 ~aL~q~~~lkda~~E~L~~Ei~RLr~l~~q 325 (374)
+.|++-++++-+..+.+.+||-+++..+++
T Consensus 83 deM~qRaQiRv~r~qqIe~eil~iq~~~q~ 112 (125)
T 1m5i_A 83 QDMEKRAQRRIARIQQIEKDILRIRQLLQS 112 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhhcc
Confidence 357777888888889999999777755544
No 204
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=47.13 E-value=1.5e+02 Score=30.25 Aligned_cols=35 Identities=9% Similarity=-0.017 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHH
Q 017286 250 LQYIAELERNVQSLQAEGTEVSAELEFLNQQNLIL 284 (374)
Q Consensus 250 lqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L 284 (374)
+..|.+|..+-..|+.+...|.++...+.++-..+
T Consensus 36 ~d~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~ 70 (484)
T 3lss_A 36 VDAIIEADKKWRRTQFLTEASKKLINICSKAVGAK 70 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666665544333
No 205
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=46.88 E-value=46 Score=24.38 Aligned_cols=20 Identities=30% Similarity=0.488 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHhhHHHHHHH
Q 017286 255 ELERNVQSLQAEGTEVSAEL 274 (374)
Q Consensus 255 ELErkVq~LQ~E~a~Ls~~i 274 (374)
+|.+.+..|...|..|...+
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L 32 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETL 32 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333
No 206
>1uur_A Stata protein, STAT protein; transcription activator, SH2, signal transduction, transducer, transcription factor; HET: PTR; 2.7A {Dictyostelium discoideum} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 1uus_A*
Probab=46.26 E-value=1.6e+02 Score=30.29 Aligned_cols=83 Identities=19% Similarity=0.215 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHH---HHHhhHHHHHHHH----HHHHHhHHHHHhhHHHHHHHHHHH
Q 017286 237 AKQQFAQRSRVRKLQYIAEL----------ERNVQS---LQAEGTEVSAELE----FLNQQNLILSMENKALKQRLESLA 299 (374)
Q Consensus 237 aKRqSAqRSR~RKlqYI~EL----------ErkVq~---LQ~E~a~Ls~~i~----~L~~~~~~L~~EN~~LK~rL~aL~ 299 (374)
.|=.++|+--+-|+...... |..++. ||++-++|+.+|. .|++-....-.|=..|+ +|..|.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~l~~~~~~~il~p~~l~-~l~~l~ 96 (473)
T 1uur_A 18 YKLLSEQEQTLVQMIHEQSLLLNRLPPTLDENSLAPLKSLSQKQITLSGQMNTEMSALDATKKGMILEPTDLA-KLFALK 96 (473)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCSSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCChHHHh-HHHHHH
Confidence 44588899988888765432 556666 8888888887553 34443333334444455 666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 017286 300 QEQLIKCLEHEVLEREIGRLR 320 (374)
Q Consensus 300 q~~~lkda~~E~L~~Ei~RLr 320 (374)
|+..+.--+=..|..||++|-
T Consensus 97 q~L~~~~~~l~~l~~el~~~l 117 (473)
T 1uur_A 97 QDLQIQFKQLSLLHNEIQSIL 117 (473)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHhhhhHHHHHHHHHHHHH
Confidence 666655555566777777653
No 207
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=46.09 E-value=45 Score=24.17 Aligned_cols=14 Identities=36% Similarity=0.287 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHH
Q 017286 308 EHEVLEREIGRLRV 321 (374)
Q Consensus 308 ~~E~L~~Ei~RLr~ 321 (374)
+...|+.||-||-.
T Consensus 32 iianlrdeiarlen 45 (52)
T 3he5_B 32 IIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45566677777654
No 208
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=45.28 E-value=1e+02 Score=25.20 Aligned_cols=16 Identities=25% Similarity=0.447 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 017286 309 HEVLEREIGRLRVVYQ 324 (374)
Q Consensus 309 ~E~L~~Ei~RLr~l~~ 324 (374)
-+..++||.|||.-..
T Consensus 70 Kq~YEeEI~rLr~eLe 85 (92)
T 3vp9_A 70 KDAYEEEIKHLKLGLE 85 (92)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3457789999987544
No 209
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=44.97 E-value=7.8 Score=31.85 Aligned_cols=22 Identities=14% Similarity=0.212 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 017286 239 QQFAQRSRVRKLQYIAELERNV 260 (374)
Q Consensus 239 RqSAqRSR~RKlqYI~ELErkV 260 (374)
|..|++.|-||+.-+.+||..|
T Consensus 71 r~AA~~CRkrK~~~~d~l~~~~ 92 (92)
T 1skn_P 71 KVAARTCRQRRTDRHDKMSHYI 92 (92)
T ss_dssp HHHHHHHHHHHHHHTTTC----
T ss_pred HHHHHHHHHHHHHHHHhhhccC
Confidence 5999999999999999998753
No 210
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=44.88 E-value=46 Score=26.17 Aligned_cols=22 Identities=27% Similarity=0.234 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAEL 274 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i 274 (374)
|.+||..++.+..++..|..++
T Consensus 42 I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 42 IDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444
No 211
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=44.65 E-value=2.5e+02 Score=29.38 Aligned_cols=70 Identities=19% Similarity=0.224 Sum_probs=43.0
Q ss_pred chhhhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHH
Q 017286 231 DTETKRAKQQFAQRSRVR-----KLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQ 300 (374)
Q Consensus 231 ~~DpKRaKRqSAqRSR~R-----KlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q 300 (374)
+-|-|+.+-+-|---|+| +...|..+|.-|++||+.++.+..+....+.....+..|...|+-.+..+.+
T Consensus 338 e~~Kki~naevae~~~lrQRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~~ 412 (602)
T 1cii_A 338 EGDKKIYNAEVAEWDKLRQRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQ 412 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 345666676666555555 3445566677777777777777666666666655555566666555555544
No 212
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=44.53 E-value=1.2e+02 Score=24.37 Aligned_cols=56 Identities=13% Similarity=0.138 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 017286 254 AELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHE 310 (374)
Q Consensus 254 ~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E 310 (374)
+.|+.+|..|+.+...|..+|..+..+-... --+..++.-|..|-.=--|||+-+.
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~-~~~~~~~~hI~~Lh~YNeiKD~gq~ 59 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKLKNR-DAKQTVQKHIDLLHTYNEIRDIALG 59 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSS-CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3455555555555555555555543221100 0145677778777776777776443
No 213
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=44.48 E-value=18 Score=23.84 Aligned_cols=17 Identities=47% Similarity=0.593 Sum_probs=11.4
Q ss_pred HHHHHhhHHHHHHHHHH
Q 017286 282 LILSMENKALKQRLESL 298 (374)
Q Consensus 282 ~~L~~EN~~LK~rL~aL 298 (374)
..|.+||+.||-+++.|
T Consensus 9 asleaenkqlkakveel 25 (31)
T 1p9i_A 9 ASLEAENKQLKAKVEEL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34567777777777655
No 214
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=44.19 E-value=1.5e+02 Score=27.91 Aligned_cols=56 Identities=21% Similarity=0.250 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHH
Q 017286 240 QFAQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQ 300 (374)
Q Consensus 240 qSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q 300 (374)
.|-+-+|.||..-..++.+ |.... --+.+|..|+++...+.+||...--+|.++..
T Consensus 104 ~svqp~R~~R~~l~~~I~k----Lk~k~-P~s~kl~~LeqELvraEae~lvaEAqL~n~kR 159 (234)
T 3plt_A 104 ASVQPSRDRKEKITDEIAH----LKYKD-PQSTKIPVLEQELVRAEAESLVAEAQLSNITR 159 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHC-TTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHH----HhccC-CCCchHHHHHHHHHHHHHHhhHHHHHHHHhHH
Confidence 5666666666655555532 22111 12345566666555555555555555555554
No 215
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=44.19 E-value=29 Score=24.14 Aligned_cols=27 Identities=30% Similarity=0.331 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHHHHhHHHHHhhHHHH
Q 017286 266 EGTEVSAELEFLNQQNLILSMENKALK 292 (374)
Q Consensus 266 E~a~Ls~~i~~L~~~~~~L~~EN~~LK 292 (374)
|+..|-..|+.-+.+-..|..||.+|+
T Consensus 8 ENekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 8 ENEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 566677777777777777777777765
No 216
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=44.13 E-value=46 Score=25.13 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=24.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHH
Q 017286 257 ERNVQSLQAEGTEVSAELEFLNQQNLILSMENKAL 291 (374)
Q Consensus 257 ErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~L 291 (374)
|++|..|..-+-.|-.+|..|+.++....-|+--|
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL 44 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERL 44 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777778888888877777777666544
No 217
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=43.88 E-value=74 Score=23.26 Aligned_cols=36 Identities=17% Similarity=0.212 Sum_probs=26.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHH
Q 017286 257 ERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALK 292 (374)
Q Consensus 257 ErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK 292 (374)
|++|..|..-+..|..+|+.|+..+..+.-|+--|+
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~ 38 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLN 38 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 567777777788888888888888888777754443
No 218
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=43.80 E-value=27 Score=27.04 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 292 KQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQ 324 (374)
Q Consensus 292 K~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~ 324 (374)
..+|..|+.....||++...|+.++.+++.++.
T Consensus 24 de~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 24 EERIKELEKRLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 456788999999999999999999999998886
No 219
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=43.58 E-value=39 Score=33.57 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHH
Q 017286 255 ELERNVQSLQAEGTEVSAELEF 276 (374)
Q Consensus 255 ELErkVq~LQ~E~a~Ls~~i~~ 276 (374)
+|..+++.|+++...++.+|..
T Consensus 39 ~~~~~~~~l~~~~n~~sk~i~~ 60 (421)
T 1ses_A 39 ELKKRLQEVQTERNQVAKRVPK 60 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566666666666666654
No 220
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=43.36 E-value=1.4e+02 Score=24.83 Aligned_cols=26 Identities=31% Similarity=0.349 Sum_probs=10.9
Q ss_pred hhHHHHHHHHHHHHHhHHHHHhhHHH
Q 017286 266 EGTEVSAELEFLNQQNLILSMENKAL 291 (374)
Q Consensus 266 E~a~Ls~~i~~L~~~~~~L~~EN~~L 291 (374)
|--.|-..+..|+.++..|...++..
T Consensus 38 EYl~LE~~~s~le~e~~rlr~~~~~~ 63 (104)
T 3s9g_A 38 EYLELEKSLSRMEDENNRLRLESKRL 63 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33344444444444444443333333
No 221
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=42.91 E-value=23 Score=22.91 Aligned_cols=19 Identities=42% Similarity=0.655 Sum_probs=13.1
Q ss_pred HHHHhhHHHHHHHHHHHHH
Q 017286 283 ILSMENKALKQRLESLAQE 301 (374)
Q Consensus 283 ~L~~EN~~LK~rL~aL~q~ 301 (374)
.|.-||.+|.++|++|.|.
T Consensus 4 alefendaleqkiaalkqk 22 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQK 22 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHH
Confidence 4566777777777777664
No 222
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=42.78 E-value=1e+02 Score=24.72 Aligned_cols=40 Identities=23% Similarity=0.205 Sum_probs=18.3
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 281 NLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLR 320 (374)
Q Consensus 281 ~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr 320 (374)
...|.-|=+.||.|+..|+.+..--+---.+-+.||.-|+
T Consensus 21 ~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq 60 (81)
T 3qh9_A 21 AEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQ 60 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3345555555555555555554433333333334443333
No 223
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=42.39 E-value=28 Score=23.23 Aligned_cols=29 Identities=24% Similarity=0.256 Sum_probs=18.9
Q ss_pred HHHHHHHhHHHHHhhHHHHHHHHHHHHHH
Q 017286 274 LEFLNQQNLILSMENKALKQRLESLAQEQ 302 (374)
Q Consensus 274 i~~L~~~~~~L~~EN~~LK~rL~aL~q~~ 302 (374)
++.|+.+.....+||-.|.+.++.|++++
T Consensus 3 vaqlekevaqaeaenyqleqevaqlehec 31 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEHEC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 34444455555778888888877777653
No 224
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=42.26 E-value=1.2e+02 Score=23.78 Aligned_cols=49 Identities=14% Similarity=0.190 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHH
Q 017286 251 QYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLA 299 (374)
Q Consensus 251 qYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~ 299 (374)
.+|..++..+..|............-|......|..|.+.|..++...+
T Consensus 14 eEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaE 62 (89)
T 3bas_A 14 EEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLE 62 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4555666666666666665556666666666666666666655543333
No 225
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=42.25 E-value=96 Score=23.98 Aligned_cols=15 Identities=27% Similarity=0.259 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHH
Q 017286 311 VLEREIGRLRVVYQQ 325 (374)
Q Consensus 311 ~L~~Ei~RLr~l~~q 325 (374)
.|+.|+..|+...++
T Consensus 61 ~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 61 KLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 444455555544443
No 226
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=42.16 E-value=81 Score=32.30 Aligned_cols=24 Identities=4% Similarity=-0.175 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Q 017286 256 LERNVQSLQAEGTEVSAELEFLNQ 279 (374)
Q Consensus 256 LErkVq~LQ~E~a~Ls~~i~~L~~ 279 (374)
|..+++.|+++...++.+|..+..
T Consensus 49 ~~~~~~~l~~~rN~~sk~i~~~~~ 72 (484)
T 3lss_A 49 TQFLTEASKKLINICSKAVGAKKK 72 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344556666666666666655533
No 227
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=42.12 E-value=1.6e+02 Score=26.92 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Q 017286 256 LERNVQSLQAEGTEVSAELEFLNQQ 280 (374)
Q Consensus 256 LErkVq~LQ~E~a~Ls~~i~~L~~~ 280 (374)
|-.++++.+.|+..|..+|..+..+
T Consensus 32 L~~ql~~k~~ei~~L~~ql~sl~~~ 56 (190)
T 4emc_A 32 LSEKLDTKATEIKQLQKQIDSLNAQ 56 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444444444444444444333
No 228
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=41.86 E-value=78 Score=26.43 Aligned_cols=15 Identities=7% Similarity=0.304 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q 017286 310 EVLEREIGRLRVVYQ 324 (374)
Q Consensus 310 E~L~~Ei~RLr~l~~ 324 (374)
..|+.++.-||....
T Consensus 68 ~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 68 SILQFQFAEVKEALK 82 (103)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334445544554333
No 229
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=41.76 E-value=17 Score=27.50 Aligned_cols=58 Identities=28% Similarity=0.400 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhhHHHHH--HHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q 017286 254 AELERNVQSLQAEGTEVSA--ELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLE--HEVLEREIGR 318 (374)
Q Consensus 254 ~ELErkVq~LQ~E~a~Ls~--~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~--~E~L~~Ei~R 318 (374)
..||.+|++|+..+..|-. +|..|.. .=.+||.+|+.|-.---.+.+. -..|+.||..
T Consensus 5 kaleekvkaleekvkalggggrieelkk-------kweelkkkieelggggevkkveeevkkleeeikk 66 (67)
T 1lq7_A 5 KALEEKVKALEEKVKALGGGGRIEELKK-------KWEELKKKIEELGGGGEVKKVEEEVKKLEEEIKK 66 (67)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSSHHHHHH-------HHHHHHHHHHHTTSSSTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCccHHHHHH-------HHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhc
Confidence 4578888888777766643 5555433 3346777777775443333332 2345555543
No 230
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=40.56 E-value=14 Score=31.28 Aligned_cols=23 Identities=39% Similarity=0.465 Sum_probs=16.0
Q ss_pred HHHHHHhHHHHHhhHHHHHHHHH
Q 017286 275 EFLNQQNLILSMENKALKQRLES 297 (374)
Q Consensus 275 ~~L~~~~~~L~~EN~~LK~rL~a 297 (374)
..|..+-..|.+||++||.+|..
T Consensus 11 EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 11 EEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444555679999999999973
No 231
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=40.55 E-value=51 Score=25.96 Aligned_cols=44 Identities=23% Similarity=0.392 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHH
Q 017286 252 YIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRL 295 (374)
Q Consensus 252 YI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL 295 (374)
.|.|+..||.-|+.--..+..+|+-|+++-..|..+=..++.||
T Consensus 22 EI~EID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~i~~rl 65 (72)
T 2xu6_A 22 EIRDIEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQIDDRL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444433333333333
No 232
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=40.46 E-value=2.4e+02 Score=26.64 Aligned_cols=55 Identities=18% Similarity=0.213 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 252 YIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLE 313 (374)
Q Consensus 252 YI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~ 313 (374)
-++-|+-+-.....|+.++-.+|+.|+ .--..+-+||+.|+++-.+-+-.-..++
T Consensus 164 ~LelL~IRK~ma~sEI~EID~KI~~L~-------~mR~~vl~RLA~lEqdEl~LE~eL~~V~ 218 (242)
T 3uux_B 164 SLEFLNIQKNSTLSEIRDIEVEVENLR-------QKKEKLLGKIANIEQNQLLLEDNLKQID 218 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 345566666666677777777776664 4445667899999997655444333333
No 233
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=38.54 E-value=33 Score=32.88 Aligned_cols=40 Identities=23% Similarity=0.344 Sum_probs=18.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHH
Q 017286 259 NVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQE 301 (374)
Q Consensus 259 kVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~ 301 (374)
.++.|+.++..|..+|+.|+++...+.. ..+++++.|+..
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~~e~~~k---~n~~rl~~Lqk~ 225 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQERSTANK---ANAERLKRLQKS 225 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHTTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh---hhHHHHHHHHHH
Confidence 4444445555555555555444333333 234445545444
No 234
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=38.12 E-value=1.1e+02 Score=21.88 Aligned_cols=43 Identities=12% Similarity=0.100 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHH
Q 017286 255 ELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLES 297 (374)
Q Consensus 255 ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~a 297 (374)
.||++|..+..+...+..++..+......+..+=+..+..|..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~ 51 (60)
T 3htk_A 9 TLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIK 51 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443344444444443333333333333333333333
No 235
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=37.95 E-value=1.3e+02 Score=24.47 Aligned_cols=27 Identities=11% Similarity=0.126 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 017286 252 YIAELERNVQSLQAEGTEVSAELEFLN 278 (374)
Q Consensus 252 YI~ELErkVq~LQ~E~a~Ls~~i~~L~ 278 (374)
-|.+|+..++..+..-..|.-.+..+.
T Consensus 23 Ki~el~~ei~ke~~~regl~Km~~vY~ 49 (98)
T 2ke4_A 23 QLEERSRELQKEVDQREALKKMKDVYE 49 (98)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555544444443
No 236
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=37.55 E-value=1.5e+02 Score=23.23 Aligned_cols=30 Identities=23% Similarity=0.211 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhHHHH
Q 017286 256 LERNVQSLQAEGTEVSAELEFLNQQNLILS 285 (374)
Q Consensus 256 LErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~ 285 (374)
|-..|..|..|..+|..++..++++...+.
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~ 31 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLK 31 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777777777777777766655554
No 237
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=37.31 E-value=1.1e+02 Score=24.77 Aligned_cols=12 Identities=33% Similarity=0.481 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHH
Q 017286 311 VLEREIGRLRVV 322 (374)
Q Consensus 311 ~L~~Ei~RLr~l 322 (374)
+|..||---|.|
T Consensus 76 ~Le~EIatYrkL 87 (95)
T 3mov_A 76 ALDMEISAYRKL 87 (95)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 455666555544
No 238
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=37.19 E-value=25 Score=25.85 Aligned_cols=26 Identities=12% Similarity=0.230 Sum_probs=15.2
Q ss_pred HHHHHHhHHHHHhhHHHHHHHHHHHH
Q 017286 275 EFLNQQNLILSMENKALKQRLESLAQ 300 (374)
Q Consensus 275 ~~L~~~~~~L~~EN~~LK~rL~aL~q 300 (374)
..+..+...|..||.+|+.+|+.|+.
T Consensus 30 d~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 30 AQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445556677777777777776654
No 239
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=37.10 E-value=1.6e+02 Score=23.50 Aligned_cols=64 Identities=19% Similarity=0.152 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREI 316 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei 316 (374)
+.++|.+...+..|+.+|.-+|..|+.+...+...=..++..|..-+..+.-.++...+|.+=|
T Consensus 32 ~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRri 95 (101)
T 3u59_A 32 KKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455555555544444444433333344444444443333344444444433
No 240
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=36.77 E-value=36 Score=25.03 Aligned_cols=30 Identities=20% Similarity=0.324 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 017286 251 QYIAELERNVQSLQAEGTEVSAELEFLNQQ 280 (374)
Q Consensus 251 qYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~ 280 (374)
..-..||.-|.-|++.++.|...|+-|+.+
T Consensus 17 kenaklenivarlendnanlekdianlekd 46 (56)
T 3he4_A 17 KENAKLENIVARLENDNANLEKDIANLEKD 46 (56)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcchHHHHHHHHhcccchHHHHHHHHHHH
Confidence 344455555555555555555555544443
No 241
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=36.73 E-value=3.8e+02 Score=28.01 Aligned_cols=47 Identities=15% Similarity=0.153 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHH
Q 017286 256 LERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQ 302 (374)
Q Consensus 256 LErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~ 302 (374)
|-.+|..-++|++.+-.-|..++.+...++.|.+.....+.++.+++
T Consensus 354 lrQRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek 400 (602)
T 1cii_A 354 LRQRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEK 400 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44668888888888888888888888888888888888887776653
No 242
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=36.43 E-value=29 Score=34.55 Aligned_cols=32 Identities=13% Similarity=0.199 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 017286 250 LQYIAELERNVQSLQAEGTEVSAELEFLNQQN 281 (374)
Q Consensus 250 lqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~ 281 (374)
+..|.+|..+-..|+.+...|.++...+.++-
T Consensus 29 ~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i 60 (425)
T 2dq3_A 29 VDKVLELDKRRREIIKRLEALRSERNKLSKEI 60 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666665553
No 243
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=36.30 E-value=48 Score=30.78 Aligned_cols=33 Identities=27% Similarity=0.317 Sum_probs=21.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 286 MENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQ 325 (374)
Q Consensus 286 ~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~q 325 (374)
.||..|..+|..+.. +...|+.|.+.||.|..+
T Consensus 115 eEN~~Lh~~ie~l~e-------Ei~~LkeEn~eLkeLae~ 147 (209)
T 2wvr_A 115 KENEKLHKEIEQKDN-------EIARLKKENKELAEVAEH 147 (209)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 688888888887665 344555555555555444
No 244
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=36.29 E-value=74 Score=26.63 Aligned_cols=18 Identities=28% Similarity=0.296 Sum_probs=9.1
Q ss_pred HHHhhHHHHHHHHHHHHH
Q 017286 284 LSMENKALKQRLESLAQE 301 (374)
Q Consensus 284 L~~EN~~LK~rL~aL~q~ 301 (374)
|+.+..+||..++.|+.+
T Consensus 23 L~~ei~eLk~~ve~lEkE 40 (106)
T 4e61_A 23 LNEEIEQYKGTVSTLEIE 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555555555544
No 245
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.97 E-value=34 Score=34.13 Aligned_cols=44 Identities=23% Similarity=0.257 Sum_probs=20.9
Q ss_pred HhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 280 QNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVY 323 (374)
Q Consensus 280 ~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~ 323 (374)
....|...|..|..+|+.|+.+..+-..+.|.++.|+..|+.-+
T Consensus 36 ~~~~l~~~~~dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~ 79 (428)
T 4b4t_K 36 NNSALSNVNSDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKREL 79 (428)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666677777777777776666666666666666665433
No 246
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=35.39 E-value=70 Score=31.74 Aligned_cols=46 Identities=22% Similarity=0.395 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH---HhHHHHHhhHHHHHHHHHHHH
Q 017286 255 ELERNVQSLQAEGTEVSAELEFLNQ---QNLILSMENKALKQRLESLAQ 300 (374)
Q Consensus 255 ELErkVq~LQ~E~a~Ls~~i~~L~~---~~~~L~~EN~~LK~rL~aL~q 300 (374)
+|..+++.|+++...++.+|..+.. +...|..|=++||.+|+.|+.
T Consensus 41 ~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 89 (425)
T 2dq3_A 41 EIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEE 89 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666677766665422 233444555555555555543
No 247
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=35.27 E-value=25 Score=22.70 Aligned_cols=21 Identities=14% Similarity=0.173 Sum_probs=8.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHH
Q 017286 256 LERNVQSLQAEGTEVSAELEF 276 (374)
Q Consensus 256 LErkVq~LQ~E~a~Ls~~i~~ 276 (374)
||-.-..|+..++.|+.+|+.
T Consensus 5 lefendaleqkiaalkqkias 25 (28)
T 3ra3_A 5 LEFENDALEQKIAALKQKIAS 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHH
Confidence 343334444444444444433
No 248
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=35.09 E-value=1.6e+02 Score=22.98 Aligned_cols=31 Identities=13% Similarity=0.293 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhHHHH
Q 017286 255 ELERNVQSLQAEGTEVSAELEFLNQQNLILS 285 (374)
Q Consensus 255 ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~ 285 (374)
+|-..|..|..|..+|..++..++++...+.
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~ 33 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEK 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777777777766655544
No 249
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=34.97 E-value=1.3e+02 Score=27.75 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Q 017286 254 AELERNVQSLQAEGTEVSAELEFL 277 (374)
Q Consensus 254 ~ELErkVq~LQ~E~a~Ls~~i~~L 277 (374)
..|+.++..|+.++..|..++-.+
T Consensus 62 ~~l~~~l~~l~~e~~el~d~~lR~ 85 (213)
T 4ani_A 62 AAAKAQIAELEAKLSEMEHRYLRL 85 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555444443
No 250
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.70 E-value=2e+02 Score=23.91 Aligned_cols=46 Identities=22% Similarity=0.322 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHh--hHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAE--GTEVSAELEFLNQQNLILSMENKALKQRLESL 298 (374)
Q Consensus 253 I~ELErkVq~LQ~E--~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL 298 (374)
|..|++-|..|-+. ..+|..+|..+.+....|-.+-++.-.+|..+
T Consensus 30 vs~l~r~v~~LGT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~ 77 (130)
T 2dnx_A 30 TAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSL 77 (130)
T ss_dssp HHHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66666666666553 45566667666666666666655555555554
No 251
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=34.49 E-value=1.4e+02 Score=28.97 Aligned_cols=42 Identities=26% Similarity=0.376 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHH
Q 017286 252 YIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQE 301 (374)
Q Consensus 252 YI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~ 301 (374)
|+.+|+.+++.|+.+...+..+++ -..+++..+.++..++++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~k~~~~~~~~~~~ 289 (426)
T 1lrz_A 248 YIKELNEERDILNKDLNKALKDIE--------KRPENKKAHNKRDNLQQQ 289 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh--------hCcccHHHHHHHHHHHHH
Confidence 444444444444444444444331 112234445555555543
No 252
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=34.37 E-value=83 Score=29.13 Aligned_cols=48 Identities=25% Similarity=0.326 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHH
Q 017286 252 YIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQL 303 (374)
Q Consensus 252 YI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~ 303 (374)
=|+=.|+.+..|+.++..|..+|+.|-. .-.+|-.+-.++..+.-.-+
T Consensus 66 aVSL~erQ~~~LR~r~~~Le~~L~~Li~----~A~~Ne~l~~~~~~l~l~LL 113 (252)
T 3e98_A 66 AVSLVERQVRLLRERNIEMRHRLSQLMD----VARENDRLFDKTRRLVLDLL 113 (252)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHh
Confidence 3566788888888888888888877632 45677777777777665443
No 253
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=33.91 E-value=67 Score=23.38 Aligned_cols=20 Identities=30% Similarity=0.336 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhhHHHHHHHH
Q 017286 256 LERNVQSLQAEGTEVSAELE 275 (374)
Q Consensus 256 LErkVq~LQ~E~a~Ls~~i~ 275 (374)
=||.|+.||.++-.|-.++.
T Consensus 10 AERsV~KLek~ID~LEdeL~ 29 (52)
T 2z5i_A 10 LENEVARLKKLVDDLEDELY 29 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666655444
No 254
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=33.73 E-value=95 Score=32.08 Aligned_cols=21 Identities=19% Similarity=0.102 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 017286 308 EHEVLEREIGRLRVVYQQQQQ 328 (374)
Q Consensus 308 ~~E~L~~Ei~RLr~l~~qqq~ 328 (374)
..+.+..||+||=.....|--
T Consensus 140 ~l~~q~skIQRLE~dI~~q~~ 160 (491)
T 1m1j_A 140 SIQEQVVEMKRLEVDIDIKIR 160 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 467777888888888777765
No 255
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=33.61 E-value=25 Score=24.02 Aligned_cols=29 Identities=21% Similarity=0.361 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 017286 252 YIAELERNVQSLQAEGTEVSAELEFLNQQ 280 (374)
Q Consensus 252 YI~ELErkVq~LQ~E~a~Ls~~i~~L~~~ 280 (374)
.|..|-+|++.|+.+.-.+..++..++++
T Consensus 5 ~i~avKkKiq~lq~q~d~aee~~~~~~~~ 33 (37)
T 3azd_A 5 SLEAVRRKIRSLQEQNYHLENEVARLKKL 33 (37)
T ss_dssp -CHHHHHHHHHHHHHTTTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888888888877654
No 256
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=33.34 E-value=98 Score=24.10 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Q 017286 254 AELERNVQSLQAEGTEVSAELEFL 277 (374)
Q Consensus 254 ~ELErkVq~LQ~E~a~Ls~~i~~L 277 (374)
..|+.++..|..++..|..++..+
T Consensus 68 ~~L~~~~e~i~~~i~~le~~~~~~ 91 (107)
T 1fxk_A 68 EELQEKLETLQLREKTIERQEERV 91 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 257
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=33.31 E-value=60 Score=26.19 Aligned_cols=33 Identities=27% Similarity=0.296 Sum_probs=23.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 286 MENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQ 325 (374)
Q Consensus 286 ~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~q 325 (374)
.||..|..+|..+.. ....|+.|.++|+.+-.+
T Consensus 38 ~EN~~Lh~~ie~~~e-------Ei~~Lk~en~~L~elA~~ 70 (83)
T 1wlq_A 38 KENEKLHKEIEQKDS-------EIARLRKENKDLAEVAEH 70 (83)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 678888877776644 466777777777777665
No 258
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=33.11 E-value=47 Score=22.20 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Q 017286 254 AELERNVQSLQAEGTEVSAELEFLNQ 279 (374)
Q Consensus 254 ~ELErkVq~LQ~E~a~Ls~~i~~L~~ 279 (374)
+.||..|..|++-+..|..++..|+.
T Consensus 2 srlee~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 2 SRLEEDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777777777777777766644
No 259
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=32.95 E-value=20 Score=29.12 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHH
Q 017286 245 SRVRKLQYIAELERNVQSLQAEGTE 269 (374)
Q Consensus 245 SR~RKlqYI~ELErkVq~LQ~E~a~ 269 (374)
|=+|=++-|.|||.++..||+|...
T Consensus 59 SViRLQKKImdLE~~~~~l~~el~~ 83 (88)
T 1uuj_A 59 SVIRLQKKVMELESKLNEAKEEFTS 83 (88)
T ss_dssp CHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3355566688888888888888764
No 260
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=32.92 E-value=1.2e+02 Score=23.82 Aligned_cols=43 Identities=19% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHH
Q 017286 249 KLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKAL 291 (374)
Q Consensus 249 KlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~L 291 (374)
+-..+..|+.++..|..++..|..++..++.+...|..+=.++
T Consensus 68 ~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 68 KDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 261
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=32.83 E-value=27 Score=24.88 Aligned_cols=19 Identities=11% Similarity=0.317 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHhhHHHHHH
Q 017286 255 ELERNVQSLQAEGTEVSAE 273 (374)
Q Consensus 255 ELErkVq~LQ~E~a~Ls~~ 273 (374)
+||.+|.+|+....+|...
T Consensus 20 ~LE~Ri~~LE~KLd~L~~~ 38 (43)
T 2pnv_A 20 DFEKRIVTLETKLETLIGS 38 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555544444444443
No 262
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=32.74 E-value=1.3e+02 Score=21.37 Aligned_cols=49 Identities=12% Similarity=-0.000 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHH
Q 017286 248 RKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLE 296 (374)
Q Consensus 248 RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~ 296 (374)
+...++.+++.+|..+..+...+...+..+.......+.+=..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~ 57 (60)
T 3htk_A 9 TLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNE 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566665666666666666666666665555555555555555544
No 263
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=32.68 E-value=1.8e+02 Score=22.74 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=10.8
Q ss_pred hHHHHHhhHHHHHHHHHHHHH
Q 017286 281 NLILSMENKALKQRLESLAQE 301 (374)
Q Consensus 281 ~~~L~~EN~~LK~rL~aL~q~ 301 (374)
...|..|+.+|..+|..++++
T Consensus 8 i~~l~~E~eel~~klk~~~ee 28 (71)
T 1s1c_X 8 IEILRRENEELTEKMKKAEEE 28 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555544
No 264
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=32.51 E-value=2.4e+02 Score=26.42 Aligned_cols=43 Identities=16% Similarity=0.137 Sum_probs=32.7
Q ss_pred hHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 017286 281 NLILSMENKALKQRLESLAQE-QLIKCLEHEVLEREIGRLRVVY 323 (374)
Q Consensus 281 ~~~L~~EN~~LK~rL~aL~q~-~~lkda~~E~L~~Ei~RLr~l~ 323 (374)
...|..-+..|.++++++.+. ...-+.++.+|..+++-||.-+
T Consensus 204 ~~~l~~~~~~~~qq~e~f~~~~~p~~e~~~~~l~~~~e~l~~~l 247 (273)
T 3s84_A 204 QKSLAELGGHLDQQVEEFRRRVEPYGENFNKALVQQMEQLRQKL 247 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHh
Confidence 445556668899999999876 4556777889999998888744
No 265
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=32.34 E-value=19 Score=33.54 Aligned_cols=23 Identities=22% Similarity=0.115 Sum_probs=10.9
Q ss_pred HHHhHHHHHhhHHHHHHHHHHHH
Q 017286 278 NQQNLILSMENKALKQRLESLAQ 300 (374)
Q Consensus 278 ~~~~~~L~~EN~~LK~rL~aL~q 300 (374)
.+++..|..||.+|+.++..+++
T Consensus 25 ~~eN~~Lk~e~~~l~~~~~~~~~ 47 (255)
T 2j5u_A 25 YTENQHLKERLEELAQLESEVAD 47 (255)
T ss_dssp -CTTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555554444443
No 266
>2wpq_A Trimeric autotransporter adhesin fragment; hydrophobic core, ION coordination, protein export, TAA, membrane protein, polar core; 1.85A {Salmonella enterica subsp}
Probab=32.31 E-value=2.2e+02 Score=23.64 Aligned_cols=71 Identities=13% Similarity=0.117 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh---------------------HHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 017286 252 YIAELERNVQSLQAEGTEVSAELEFLNQQN---------------------LILSMENKALKQRLESLAQEQLIKCLEHE 310 (374)
Q Consensus 252 YI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~---------------------~~L~~EN~~LK~rL~aL~q~~~lkda~~E 310 (374)
.|+|+=.|+-.++.+.+..-+||.-..... ..-+..=.-|-..+..|.+++++=+.-.-
T Consensus 7 ~~~~~~~~~~~~~~~~aVNGSQL~~Tnd~vA~NTtdIatnTtNIa~nT~nIATNTTnItNL~dsv~~L~DDALLWn~~~~ 86 (99)
T 2wpq_A 7 KIEEILSKIYHIENEIARIKKLIFDTNEKVDQNTADITTNTNSINQNTTDIATNTTNINNLSDSMKQIEDKIEEILSKIY 86 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcchhhhcchhhhcccchhhhhhhhhhhhhhhhhccchhhhccccccchHHHHHHHHhHHHHHHcchhh
Confidence 356666677777777777777766654221 01111223577889999999999999999
Q ss_pred HHHHHHHHHHHH
Q 017286 311 VLEREIGRLRVV 322 (374)
Q Consensus 311 ~L~~Ei~RLr~l 322 (374)
.|+.||-|||.|
T Consensus 87 ~~~~~~~~~~~~ 98 (99)
T 2wpq_A 87 HIENEIARIKKL 98 (99)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHhc
Confidence 999999999986
No 267
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=31.98 E-value=98 Score=28.42 Aligned_cols=33 Identities=21% Similarity=0.286 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 292 KQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQ 324 (374)
Q Consensus 292 K~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~ 324 (374)
+..++..+.+.....+..+.++.++..++.-+.
T Consensus 113 ~~~~~~a~~~~~~~~a~l~~~~a~l~~a~a~l~ 145 (341)
T 3fpp_A 113 QQDLDNAATEMAVKQAQIGTIDAQIKRNQASLD 145 (341)
T ss_dssp THHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555554444445555566666666655443
No 268
>1c94_A Retro-GCN4 leucine zipper; retro-coiled coil, 4-alpha-helix-bundle, peptide synthesis, gene regulation; 2.08A {Synthetic} SCOP: k.11.1.1
Probab=31.89 E-value=17 Score=24.95 Aligned_cols=29 Identities=17% Similarity=0.247 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 293 QRLESLAQEQLIKCLEHEVLEREIGRLRV 321 (374)
Q Consensus 293 ~rL~aL~q~~~lkda~~E~L~~Ei~RLr~ 321 (374)
.+|.+.+.+......+-|+.+.|++.+|+
T Consensus 9 kklravenelhynkslleevkdelqkmrq 37 (38)
T 1c94_A 9 KKLRAVENELHYNKSLLEEVKDELQKMRQ 37 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHhc
Confidence 35677888888888888889999887765
No 269
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=31.80 E-value=67 Score=21.41 Aligned_cols=20 Identities=30% Similarity=0.376 Sum_probs=12.4
Q ss_pred HHHHhhHHHHHHHHHHHHHH
Q 017286 283 ILSMENKALKQRLESLAQEQ 302 (374)
Q Consensus 283 ~L~~EN~~LK~rL~aL~q~~ 302 (374)
.|.+.|-+-|+++++|.+.+
T Consensus 12 alkarnyaakqkvqalrhkc 31 (33)
T 1fmh_B 12 ALKARNYAAKQKVQALRHKC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHhc
Confidence 34566666777777766543
No 270
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=31.75 E-value=23 Score=23.47 Aligned_cols=25 Identities=24% Similarity=0.419 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFL 277 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L 277 (374)
|..||.|+..|+..-+.-..+|+.|
T Consensus 2 iaaleqkiaaleqkcaaceqkiaal 26 (32)
T 4g1a_A 2 IAALEQKIAALEQKCAACEQKIAAL 26 (32)
T ss_dssp CHHHHHHHHHHHHHTSSHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666655555544444444
No 271
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=31.68 E-value=1.7e+02 Score=27.26 Aligned_cols=55 Identities=20% Similarity=0.104 Sum_probs=41.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHh
Q 017286 232 TETKRAKQQFAQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSME 287 (374)
Q Consensus 232 ~DpKRaKRqSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~E 287 (374)
.+...+|+.-|.|-+.-|. -+..|+.+++.++.|..++.++|+...++...|+..
T Consensus 160 asde~Ik~yLa~R~~~lK~-kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~ 214 (228)
T 3q0x_A 160 GNDSVVKQFLAFRLSEVKG-TCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQ 214 (228)
T ss_dssp CCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556688888877776664 456789999999999999988888877766665443
No 272
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=31.53 E-value=1e+02 Score=22.61 Aligned_cols=41 Identities=22% Similarity=0.183 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHH
Q 017286 255 ELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRL 295 (374)
Q Consensus 255 ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL 295 (374)
++..+|..|+.+...+..+++...++...|..=.-.|-..|
T Consensus 4 ~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EI 44 (59)
T 1gk6_A 4 QLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEI 44 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 45556666666666666666666555555544433443333
No 273
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil, hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Probab=31.48 E-value=3.4e+02 Score=25.66 Aligned_cols=65 Identities=11% Similarity=0.023 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-----HHHHHhHHHHHhhHHHHHHHHHHHHHHH
Q 017286 239 QQFAQRSRVRKLQYIAELERNVQSLQAEGTEVSAELE-----FLNQQNLILSMENKALKQRLESLAQEQL 303 (374)
Q Consensus 239 RqSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~-----~L~~~~~~L~~EN~~LK~rL~aL~q~~~ 303 (374)
++..+-+.++.-+|-+|.+.+-+.|...+.-|..-+. .|..-......|+++||.+++....+.+
T Consensus 82 ~q~~el~~l~~~q~~eE~~~k~~Hl~eq~~~Lk~l~~e~Q~~QmK~Lk~~~ErE~KELkk~q~kks~e~i 151 (251)
T 1jad_A 82 RLEMELIHLGEEYHDGIRRRKEQHATEQTAKITELAREKQIAELKALKESSESNIKDIKKKLEAKRLDRI 151 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777888899999999999999988888777765333 3333344556789999888876655533
No 274
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=31.38 E-value=1.3e+02 Score=24.62 Aligned_cols=23 Identities=9% Similarity=0.222 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHH
Q 017286 255 ELERNVQSLQAEGTEVSAELEFL 277 (374)
Q Consensus 255 ELErkVq~LQ~E~a~Ls~~i~~L 277 (374)
-|++|++.|+.....|...+..+
T Consensus 92 ~l~~r~~~l~~~~~~l~~~l~~l 114 (133)
T 1fxk_C 92 SIKSQKNELESTLQKMGENLRAI 114 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 275
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=31.32 E-value=4.6e+02 Score=27.16 Aligned_cols=48 Identities=27% Similarity=0.278 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHH
Q 017286 250 LQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLES 297 (374)
Q Consensus 250 lqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~a 297 (374)
.+|-.||+|=-+.=+.--++....|+.++.++..+..||.++|+|=+.
T Consensus 12 a~yq~elarvqkana~aka~Ye~~~ae~~a~n~~i~aeNeaikkrNa~ 59 (497)
T 3iox_A 12 TAYQTELARVQKANADAKAAYEAAVAANNAANAALTAENTAIKKRNAD 59 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 345555554332222222333334555555566666666666655444
No 276
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=31.24 E-value=4e+02 Score=27.57 Aligned_cols=29 Identities=17% Similarity=0.261 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 017286 251 QYIAELERNVQSLQAEGTEVSAELEFLNQ 279 (374)
Q Consensus 251 qYI~ELErkVq~LQ~E~a~Ls~~i~~L~~ 279 (374)
+|.+|||+++..|+..+..--..|..|+.
T Consensus 111 e~S~eLe~ri~yIK~kVd~qi~~IrvLq~ 139 (491)
T 1m1j_A 111 HVSTELRRRIVTLKQRVATQVNRIKALQN 139 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555444444444443
No 277
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=30.56 E-value=39 Score=25.40 Aligned_cols=22 Identities=14% Similarity=0.114 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHH
Q 017286 251 QYIAELERNVQSLQAEGTEVSA 272 (374)
Q Consensus 251 qYI~ELErkVq~LQ~E~a~Ls~ 272 (374)
.|+.+||.+|..|+..+..|.+
T Consensus 45 ~~~~~L~~r~~~le~~l~~l~~ 66 (89)
T 3coq_A 45 AHLTEVESRLERLEQLFLLIFP 66 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHcC
Confidence 5899999999999988777655
No 278
>2h7o_A Protein kinase YPKA; YOPO, GDI, signaling protein; 2.00A {Yersinia pseudotuberculosis} PDB: 2h7v_C*
Probab=30.54 E-value=2.5e+02 Score=27.15 Aligned_cols=55 Identities=25% Similarity=0.160 Sum_probs=35.8
Q ss_pred HHHHHHHHH-------------HHHHHHHHHHHhhHHHHHHHHHHHH----------HhHHHHHhhHHHHHHHHHHHHHH
Q 017286 246 RVRKLQYIA-------------ELERNVQSLQAEGTEVSAELEFLNQ----------QNLILSMENKALKQRLESLAQEQ 302 (374)
Q Consensus 246 R~RKlqYI~-------------ELErkVq~LQ~E~a~Ls~~i~~L~~----------~~~~L~~EN~~LK~rL~aL~q~~ 302 (374)
-+=||+||. +|||..+.|++-.+.|.+ .-++ ....|..-..+|..+|..|.+++
T Consensus 110 aEP~Lk~i~~~l~~~~~~~di~tl~r~~q~lET~lsvl~~---ss~q~~~~s~evy~~L~~lae~k~~l~~~l~~Lk~~Q 186 (303)
T 2h7o_A 110 VEPSLQRIQKHLDQTHSFSDIGSLVRAHKHLETLLEVLVT---LSQQGQPVSSETYGFLNRLAEAKITLSQQLNTLQQQQ 186 (303)
T ss_dssp HHHHHHHHHGGGGSCCCGGGHHHHHHHHHHHHHHHHHHHH---HHC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHhhc---cCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888 999999999998777732 2111 12234555667777777776544
Q ss_pred H
Q 017286 303 L 303 (374)
Q Consensus 303 ~ 303 (374)
.
T Consensus 187 ~ 187 (303)
T 2h7o_A 187 E 187 (303)
T ss_dssp H
T ss_pred H
Confidence 3
No 279
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=30.30 E-value=3.9e+02 Score=33.72 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=16.8
Q ss_pred hhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhHH
Q 017286 233 ETKRAKQQFAQRSRV-------RKLQYIAELERNVQSLQAEGTE 269 (374)
Q Consensus 233 DpKRaKRqSAqRSR~-------RKlqYI~ELErkVq~LQ~E~a~ 269 (374)
-|||.+=..|+..-. .|.+-+.+||.+|+.|+.+-..
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~ 2053 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYAT 2053 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577765322222222 2344455555555555554433
No 280
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=30.13 E-value=44 Score=26.63 Aligned_cols=34 Identities=26% Similarity=0.413 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 017286 290 ALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQQQQQQ 330 (374)
Q Consensus 290 ~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~qqq~~~ 330 (374)
.||.+|..|+. -+..|+.|-.-||.+.-..|..|
T Consensus 19 vLKe~I~EL~e-------~~~qLE~EN~~Lk~~aspEql~q 52 (78)
T 1dip_A 19 ILKEQIRELVE-------KNSQLERENTLLKTLASPEQLEK 52 (78)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHTSSSCSCC
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHhCCHHHHHH
Confidence 46667766655 35567777777888766544444
No 281
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=30.12 E-value=1.6e+02 Score=21.34 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Q 017286 254 AELERNVQSLQAEGTEVSAELEFLNQ 279 (374)
Q Consensus 254 ~ELErkVq~LQ~E~a~Ls~~i~~L~~ 279 (374)
-.|||.-|-|+.-++.|..+|+.|+.
T Consensus 20 lqlerdeqnlekiianlrdeiarlen 45 (52)
T 3he5_B 20 LQLERDEQNLEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHhhHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777766644
No 282
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=30.05 E-value=1.9e+02 Score=22.20 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHH
Q 017286 269 EVSAELEFLNQQNLILSMENKALKQRLESLAQE 301 (374)
Q Consensus 269 ~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~ 301 (374)
.+..++.........+..|-..|+.+|+.|+.+
T Consensus 24 ~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~e 56 (81)
T 1ic2_A 24 QAEADKKAAEERSKQLEDELVALQKKLKGTEDE 56 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 333333333444444445555555555555543
No 283
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=29.21 E-value=1.9e+02 Score=26.90 Aligned_cols=37 Identities=14% Similarity=0.050 Sum_probs=24.2
Q ss_pred HhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHH
Q 017286 265 AEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQE 301 (374)
Q Consensus 265 ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~ 301 (374)
.....+++++..|++.-..+.+|++.+...|+...++
T Consensus 171 ~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~ 207 (228)
T 3q0x_A 171 FRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQ 207 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666677777777777777765
No 284
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=29.08 E-value=66 Score=20.61 Aligned_cols=20 Identities=25% Similarity=0.388 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHhhHHHHHHH
Q 017286 255 ELERNVQSLQAEGTEVSAEL 274 (374)
Q Consensus 255 ELErkVq~LQ~E~a~Ls~~i 274 (374)
.|...|-.|..|+..|+.++
T Consensus 4 qlkdevgelkgevralkdev 23 (27)
T 3v86_A 4 QLKDEVGELKGEVRALKDEV 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhHHHHHHHHH
Confidence 34444444444444444443
No 285
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=28.58 E-value=3.5e+02 Score=24.89 Aligned_cols=19 Identities=16% Similarity=0.289 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 017286 307 LEHEVLEREIGRLRVVYQQ 325 (374)
Q Consensus 307 a~~E~L~~Ei~RLr~l~~q 325 (374)
+.-+.++.++..++.-+.+
T Consensus 129 a~~~~~~~~l~~~~~~l~~ 147 (369)
T 4dk0_A 129 AEMDVVQENIKQAEIEVNT 147 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344455555555544433
No 286
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=28.54 E-value=57 Score=30.35 Aligned_cols=33 Identities=15% Similarity=0.193 Sum_probs=16.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 283 ILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVV 322 (374)
Q Consensus 283 ~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l 322 (374)
.+..+..+++.+++.+..+ +.+++.+|++|+.-
T Consensus 145 e~~~~~e~~~~~i~ql~~E-------n~~le~~Ie~Lk~e 177 (250)
T 2ve7_C 145 EFLWQYKSSADKMQQLNAA-------HQEALMKLERLEKE 177 (250)
T ss_dssp HHHHHTTHHHHHHHHHHHH-------HHHHHHSCC-----
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 3445555666666655554 55567777777664
No 287
>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A
Probab=28.04 E-value=1e+02 Score=30.53 Aligned_cols=40 Identities=23% Similarity=0.088 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017286 289 KALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQQQQ 328 (374)
Q Consensus 289 ~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~qqq~ 328 (374)
.+.+.||.+|..-+.=-+.+++...+||.+|+.-|...-+
T Consensus 49 ~~v~~rI~aLk~lQ~E~~~le~ef~eEv~~LE~KY~kl~q 88 (359)
T 3fs3_A 49 EEQKETLKKLKLYQKEYYDYESKFEYELFLLRQKYHDLYG 88 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678888888876555566778888888888887766444
No 288
>2jmh_A BLO T 5, mite allergen BLO T 5; DUST mites, group 5; NMR {Blomia tropicalis} PDB: 2jrk_A
Probab=28.03 E-value=2.8e+02 Score=23.62 Aligned_cols=60 Identities=20% Similarity=0.232 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLE-SLAQEQLIKCLEHEVLEREIGR 318 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~-aL~q~~~lkda~~E~L~~Ei~R 318 (374)
+..++.++..++.-...|+.||+-|++ .-++++|.+|= .|.--.-+-++-...|.+|+.|
T Consensus 21 v~~~~~~~~k~E~~Ll~Ls~Qi~~LE~------tKsKe~K~~IlrEi~~~~~~i~Ga~~~lerElkR 81 (119)
T 2jmh_A 21 IEQANHAIEKGEHQLLYLQHQLDELNE------NKSKELQEKIIRELDVVCAMIEGAQGALERELKR 81 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH------HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666666666666777777777754 45666666642 2222233334445566666544
No 289
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=27.92 E-value=95 Score=30.22 Aligned_cols=13 Identities=23% Similarity=0.189 Sum_probs=5.4
Q ss_pred HHHHHHHhhHHHH
Q 017286 259 NVQSLQAEGTEVS 271 (374)
Q Consensus 259 kVq~LQ~E~a~Ls 271 (374)
++..|..|+..|.
T Consensus 6 ~~~~~~~~~~~~e 18 (323)
T 1lwu_C 6 TVQKILEEVRILE 18 (323)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 290
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=27.75 E-value=1.1e+02 Score=29.55 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 290 ALKQRLESLAQEQLIKCLEHEVLE 313 (374)
Q Consensus 290 ~LK~rL~aL~q~~~lkda~~E~L~ 313 (374)
+|.-+|..|.++.+-..|+.+.++
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 447 ELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444444444444444555544
No 291
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=27.03 E-value=2.7e+02 Score=23.42 Aligned_cols=17 Identities=6% Similarity=0.122 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 017286 305 KCLEHEVLEREIGRLRV 321 (374)
Q Consensus 305 kda~~E~L~~Ei~RLr~ 321 (374)
+.....+++.||..||.
T Consensus 110 Rr~fV~~~r~~I~~mk~ 126 (130)
T 4dnd_A 110 RKVFVERMREAVQEMKD 126 (130)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34456677778877775
No 292
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=27.01 E-value=1.3e+02 Score=27.83 Aligned_cols=38 Identities=16% Similarity=0.175 Sum_probs=21.7
Q ss_pred HHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 274 LEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEV 311 (374)
Q Consensus 274 i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~ 311 (374)
|++.+.|-..|+.+|..|+.+|..|...+.-.+.+.+.
T Consensus 67 VSL~erQ~~~LR~r~~~Le~~L~~Li~~A~~Ne~l~~~ 104 (252)
T 3e98_A 67 VSLVERQVRLLRERNIEMRHRLSQLMDVARENDRLFDK 104 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555666666666666666666655544444333
No 293
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=26.74 E-value=80 Score=30.19 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=11.8
Q ss_pred HhHHHHHhhHHHHHHHHHHHHH
Q 017286 280 QNLILSMENKALKQRLESLAQE 301 (374)
Q Consensus 280 ~~~~L~~EN~~LK~rL~aL~q~ 301 (374)
+...|..+|.+|..+|+.|+++
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~ 207 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQE 207 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555544
No 294
>3mq1_A Mite allergen DER P 5; DUST mite; HET: MRD MPD; 2.80A {Dermatophagoides pteronyssinus}
Probab=26.62 E-value=2.7e+02 Score=23.20 Aligned_cols=60 Identities=10% Similarity=0.161 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLE-SLAQEQLIKCLEHEVLEREIGR 318 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~-aL~q~~~lkda~~E~L~~Ei~R 318 (374)
+..++.++..++.-...|+.||+-|++ .-++++|.+|= .+.--.-+-++-...|.+|+.|
T Consensus 6 v~~~~~~~~k~E~~Ll~Ls~Qi~~LEk------tKsKe~K~~IlrEi~~~~~~i~Ga~~~lerElkR 66 (103)
T 3mq1_A 6 MERIHEQIKKGELALFYLQEQINHFEE------KPTKEMKDKIVAEMDTIIAMIDGVRGVLDRLMQR 66 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH------SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666666666677777777777764 45667776652 2333333344446666666654
No 295
>2p0t_A UPF0307 protein pspto_4464; APC85033, conserved putative protein, pseudomonas syringae P STR. DC3000, structural genomics, PSI-2; 2.19A {Pseudomonas syringae PV} SCOP: a.290.1.1
Probab=26.46 E-value=80 Score=28.37 Aligned_cols=72 Identities=19% Similarity=0.290 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHH---HHHHHHH----HHHHH
Q 017286 245 SRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIK---CLEHEVL----EREIG 317 (374)
Q Consensus 245 SR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lk---da~~E~L----~~Ei~ 317 (374)
.|-|.+|||..|=|.+ +...+...|..+...+. ...+.-.+|+.+... +|. +++++.+ ..+++
T Consensus 67 arRRQlqyIGKLmR~~-----D~e~I~~al~~~~~~~~----~~~~~~h~lE~wRdr-Li~~gd~al~e~~~~~P~~DrQ 136 (176)
T 2p0t_A 67 ARKRHILFIGKLMRDQ-----DQEAILVLLDQLDASTR----QYNERFHNLERWRDR-LIAGDDADLEKFVIEYPDADRQ 136 (176)
T ss_dssp HHHHHHHHHHHHGGGS-----CHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH-HHHSCHHHHHHHHHHSTTSCHH
T ss_pred HHHHHHHHHHHHHhcC-----CHHHHHHHHHHhhcccH----HHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHCchhhHH
Confidence 5679999999987763 23344455554443322 223334445544433 332 2445444 34789
Q ss_pred HHHHHHHHh
Q 017286 318 RLRVVYQQQ 326 (374)
Q Consensus 318 RLr~l~~qq 326 (374)
.||+|+-+=
T Consensus 137 ~LRqLiR~A 145 (176)
T 2p0t_A 137 QLRSLIRQA 145 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999773
No 296
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=26.42 E-value=3.8e+02 Score=24.60 Aligned_cols=66 Identities=12% Similarity=0.217 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 017286 247 VRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLA-QEQLIKCLEHEVLEREI 316 (374)
Q Consensus 247 ~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~-q~~~lkda~~E~L~~Ei 316 (374)
+.+++++.+.-.-+-....|+..|..+..++++.... -.+.|.||.... -+.+.+..+++.|-..|
T Consensus 111 ~k~~q~~~~~~~~Lf~~~kEn~al~lEa~yre~~~~v----~~EvK~rLDy~v~~e~~~r~~eQ~~mv~wV 177 (214)
T 2cly_A 111 EKSQQALVQKRHYLFDVQRNNIAMALEVTYRERLHRV----YREVKNRLDYHISVQNMMRQKEQEHMINWV 177 (214)
T ss_dssp HHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444333434456666666666666554333 255666666544 23445555555555444
No 297
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=26.28 E-value=85 Score=24.64 Aligned_cols=15 Identities=33% Similarity=0.410 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHH
Q 017286 307 LEHEVLEREIGRLRV 321 (374)
Q Consensus 307 a~~E~L~~Ei~RLr~ 321 (374)
-++..||.||.||-.
T Consensus 50 eq~~lLK~EIRRlER 64 (71)
T 3bbp_D 50 EQIKLLKSEIRRLER 64 (71)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 357888999988843
No 298
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=26.26 E-value=58 Score=24.95 Aligned_cols=20 Identities=30% Similarity=0.526 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHhhHHHH
Q 017286 252 YIAELERNVQSLQAEGTEVS 271 (374)
Q Consensus 252 YI~ELErkVq~LQ~E~a~Ls 271 (374)
.+.-|.++++.||.|++.|.
T Consensus 42 Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 42 ELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhc
Confidence 44446678888888887775
No 299
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=26.26 E-value=3.4e+02 Score=23.94 Aligned_cols=63 Identities=10% Similarity=0.022 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 255 ELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVY 323 (374)
Q Consensus 255 ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~ 323 (374)
+++..|..|......|..++..+.+....|..-...+..++..+.+ -..|.+++||+|+..-+
T Consensus 119 e~~~~~~~l~~~L~~l~~~l~~le~~~~~l~~~~~~~~~~~~~~~~------~~~~~~e~~~~~~~~~~ 181 (202)
T 2p4w_A 119 PINVKMRELAEFLHELNERIREIIEEKRELEEARILIETYIENTMR------RLAEENRQIIEEIFRDI 181 (202)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHCHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH------HHHHHHHHHHHHHHHHh
Confidence 4555555555555555566665544443343333333334333332 34677888888876533
No 300
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=26.00 E-value=3.2e+02 Score=23.65 Aligned_cols=48 Identities=21% Similarity=0.261 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--HHHHHhh-HHHHHHHHH
Q 017286 250 LQYIAELERNVQSLQAEGTEVSAELEFLNQQN--LILSMEN-KALKQRLES 297 (374)
Q Consensus 250 lqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~--~~L~~EN-~~LK~rL~a 297 (374)
+.-+.++|..|+.+......+..+|+.+++-. ..|..|. +.|..|+..
T Consensus 20 lKkL~dveksv~~~~k~l~~l~~el~~iekGFL~k~l~~ea~~kl~Krik~ 70 (135)
T 1i6z_A 20 LKKLKDLEVSAEKIANHLQELNKELSGIQQGFLAKELQAEALCKLDRKVKA 70 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhHHHHHHHHHHH
Confidence 33456777778877778888888877777654 3344443 344444433
No 301
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=25.91 E-value=6.1e+02 Score=26.78 Aligned_cols=59 Identities=27% Similarity=0.280 Sum_probs=33.9
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHhhHH---------------HHHHHHHHHHHhHHHHHhhHHHHHHHHHH
Q 017286 240 QFAQRSRVR---KLQYIAELERNVQSLQAEGTE---------------VSAELEFLNQQNLILSMENKALKQRLESL 298 (374)
Q Consensus 240 qSAqRSR~R---KlqYI~ELErkVq~LQ~E~a~---------------Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL 298 (374)
+.+++.|++ +-..+.+||+++..|+.|... |..++..+.++...|...+..-+.+++.+
T Consensus 387 ea~a~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (854)
T 1qvr_A 387 EAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKL 463 (854)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555554 456688888888887776544 44455555555555554444444444443
No 302
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=25.59 E-value=1.1e+02 Score=21.93 Aligned_cols=10 Identities=50% Similarity=0.763 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 017286 289 KALKQRLESL 298 (374)
Q Consensus 289 ~~LK~rL~aL 298 (374)
.+||.+|++|
T Consensus 37 aalksklqal 46 (48)
T 1g6u_A 37 AALKSKLQAL 46 (48)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 3444444443
No 303
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=25.07 E-value=3.9 Score=34.34 Aligned_cols=23 Identities=26% Similarity=0.203 Sum_probs=9.4
Q ss_pred HHHHHHHHHhHHHHHhhHHHHHH
Q 017286 272 AELEFLNQQNLILSMENKALKQR 294 (374)
Q Consensus 272 ~~i~~L~~~~~~L~~EN~~LK~r 294 (374)
.++..|+++...|..||..|+..
T Consensus 65 ~e~~~L~~e~e~L~~En~~l~~E 87 (107)
T 3a5t_A 65 KQKAELQQEVEKLASENASMKLE 87 (107)
T ss_dssp HHHTTTSSTTTTTTSTTSHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444433
No 304
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=25.03 E-value=2.5e+02 Score=22.02 Aligned_cols=46 Identities=22% Similarity=0.076 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHH
Q 017286 254 AELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLA 299 (374)
Q Consensus 254 ~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~ 299 (374)
.||-.+|..-|.|+-.|..-|..|.-....-+.-|+.|..++..++
T Consensus 6 KeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q 51 (74)
T 2q6q_A 6 KELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQ 51 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3566666666666666666666665555555555555555554443
No 305
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=24.92 E-value=1.4e+02 Score=23.55 Aligned_cols=15 Identities=13% Similarity=0.406 Sum_probs=6.1
Q ss_pred HHHHHHhhHHHHHHH
Q 017286 260 VQSLQAEGTEVSAEL 274 (374)
Q Consensus 260 Vq~LQ~E~a~Ls~~i 274 (374)
|+.|++-++.+..++
T Consensus 10 Vk~~eT~iaa~~~ev 24 (74)
T 1avy_A 10 IKAIETDIASVRQEV 24 (74)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hcccccchhhhheee
Confidence 444444444433333
No 306
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=24.71 E-value=2.4e+02 Score=21.76 Aligned_cols=27 Identities=19% Similarity=0.116 Sum_probs=10.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHhHHH
Q 017286 258 RNVQSLQAEGTEVSAELEFLNQQNLIL 284 (374)
Q Consensus 258 rkVq~LQ~E~a~Ls~~i~~L~~~~~~L 284 (374)
..|..|+.+...+..+++...++...|
T Consensus 12 ~~i~~lE~eL~~~r~e~~~ql~EYq~L 38 (74)
T 2xv5_A 12 RLLAEKEREMAEMRARMQQQLDEYQEL 38 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444433333333
No 307
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=24.70 E-value=3.1e+02 Score=23.03 Aligned_cols=13 Identities=23% Similarity=0.133 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHH
Q 017286 309 HEVLEREIGRLRV 321 (374)
Q Consensus 309 ~E~L~~Ei~RLr~ 321 (374)
-|.+..|+++|..
T Consensus 85 REkl~~eKe~L~~ 97 (110)
T 2v4h_A 85 REKLVEKKEYLQE 97 (110)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHH
Confidence 4445555555544
No 308
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=24.70 E-value=2.5e+02 Score=21.80 Aligned_cols=18 Identities=28% Similarity=0.499 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHhhH
Q 017286 251 QYIAELERNVQSLQAEGT 268 (374)
Q Consensus 251 qYI~ELErkVq~LQ~E~a 268 (374)
.-|+.||.++..|+.+.+
T Consensus 29 ~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 29 QLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 346666666666666655
No 309
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=24.44 E-value=1.7e+02 Score=24.56 Aligned_cols=42 Identities=12% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHH
Q 017286 250 LQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKAL 291 (374)
Q Consensus 250 lqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~L 291 (374)
.+.+.+|+.++..|+.....|...|..++........+...+
T Consensus 87 ~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~~~~~~~~ 128 (142)
T 3gp4_A 87 KKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQEELKDF 128 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
No 310
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=24.32 E-value=50 Score=25.23 Aligned_cols=20 Identities=20% Similarity=0.178 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHhhHHH
Q 017286 251 QYIAELERNVQSLQAEGTEV 270 (374)
Q Consensus 251 qYI~ELErkVq~LQ~E~a~L 270 (374)
.|+..||.+|..|+.....+
T Consensus 48 ~~~~~Le~rl~~le~~l~~~ 67 (96)
T 1pyi_A 48 SYVFFLEDRLAVMMRVLKEY 67 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 48999999998887655443
No 311
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=24.21 E-value=81 Score=26.24 Aligned_cols=16 Identities=13% Similarity=0.329 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHh
Q 017286 311 VLEREIGRLRVVYQQQ 326 (374)
Q Consensus 311 ~L~~Ei~RLr~l~~qq 326 (374)
.|+.++++|+.++.+|
T Consensus 27 ~l~~~l~~~~~~l~~~ 42 (182)
T 3kqg_A 27 ALQGSLENMSKLLKRQ 42 (182)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555555444
No 312
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=24.05 E-value=1.5e+02 Score=19.73 Aligned_cols=28 Identities=21% Similarity=0.412 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQQ 280 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~~ 280 (374)
+..|..+|+.|.+.+-.-..++..|.+.
T Consensus 3 vqalkkrvqalkarnyaakqkvqalrhk 30 (33)
T 1fmh_B 3 VQALKKRVQALKARNYAAKQKVQALRHK 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 4467778888888777777777766554
No 313
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=23.98 E-value=2.4e+02 Score=25.80 Aligned_cols=32 Identities=22% Similarity=0.261 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 017286 246 RVRKLQYIAELERNVQSLQAEGTEVSAELEFL 277 (374)
Q Consensus 246 R~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L 277 (374)
+.+|..-|.-|.+++..|+.|-..|..++...
T Consensus 14 ~~Kk~ELi~~L~~kL~~L~~eqe~l~ee~~~N 45 (190)
T 3thf_A 14 KQKMDELIKHLNQKIVSLKREQQTISEECSAN 45 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999998888877654
No 314
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=23.79 E-value=54 Score=21.17 Aligned_cols=10 Identities=40% Similarity=0.567 Sum_probs=3.9
Q ss_pred hHHHHHHHHH
Q 017286 288 NKALKQRLES 297 (374)
Q Consensus 288 N~~LK~rL~a 297 (374)
|..||+.|++
T Consensus 9 narlkqeiaa 18 (28)
T 3ra3_B 9 NARLKQEIAA 18 (28)
T ss_dssp HHHHHHHHHH
T ss_pred hhHHHHHHHH
Confidence 3333443333
No 315
>1tu3_F RAB GTPase binding effector protein 1; rabaptin5, effector-binding, protein transport; HET: GNP; 2.31A {Homo sapiens} SCOP: h.1.27.2
Probab=23.72 E-value=79 Score=25.22 Aligned_cols=62 Identities=26% Similarity=0.290 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 017286 251 QYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQ---EQLIKCLEHEVLEREIGRL 319 (374)
Q Consensus 251 qYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q---~~~lkda~~E~L~~Ei~RL 319 (374)
+.+.||-.+|++||+|..+- ...+++...|.- .|..+|+.+.| +-+++..++|.--..|..|
T Consensus 12 ~~~~e~k~kv~~LQ~eLdts----E~VQrDFVkLSQ---sLQvqLE~IRqadt~~qvr~Il~e~~l~di~~~ 76 (79)
T 1tu3_F 12 QLMFEEKNKAQRLQTELDVS----EQVQRDFVKLSQ---TLQVQLERIRQADSLERIRAILNDTKLTDINQL 76 (79)
T ss_dssp ---------CHHHHHHHHHH----HHHHHHHHHHHH---HHHHHHHHHHTCCSHHHHHHHTC----------
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH---HHHHHHHHHHhhhhHHHHHHHHccCccchHhhC
Confidence 34566667777777766543 334566666653 67777777765 3466666666555444433
No 316
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=23.64 E-value=1.1e+02 Score=24.67 Aligned_cols=30 Identities=3% Similarity=0.169 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 017286 251 QYIAELERNVQSLQAEGTEVSAELEFLNQQ 280 (374)
Q Consensus 251 qYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~ 280 (374)
.+..||+.-++.|+..+..|..-|...+..
T Consensus 36 ~~~~El~~~l~el~e~l~DL~~SI~i~e~~ 65 (95)
T 2c5k_T 36 DQEEEIQDILKDVEETIVDLDRSIIVMKRD 65 (95)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 566899999999999999998888887654
No 317
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=23.46 E-value=2.9e+02 Score=22.17 Aligned_cols=14 Identities=14% Similarity=0.228 Sum_probs=5.1
Q ss_pred HHHhhHHHHHHHHH
Q 017286 263 LQAEGTEVSAELEF 276 (374)
Q Consensus 263 LQ~E~a~Ls~~i~~ 276 (374)
|+.+...+...++.
T Consensus 49 lE~eL~~~r~e~~~ 62 (95)
T 3mov_A 49 KEREMAEIRDQMQQ 62 (95)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 318
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=23.01 E-value=4.1e+02 Score=23.74 Aligned_cols=58 Identities=21% Similarity=0.174 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHH---H--------hHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 017286 251 QYIAELERNVQSLQAEGTEVSAELEFLNQ---Q--------NLILSMENKALKQRLESLAQEQLIKCLE 308 (374)
Q Consensus 251 qYI~ELErkVq~LQ~E~a~Ls~~i~~L~~---~--------~~~L~~EN~~LK~rL~aL~q~~~lkda~ 308 (374)
.-+..||+..+.|+.++..|..++..+++ . -..+.......++=++..+.+.-|.|++
T Consensus 63 ~~~~~Le~~~~~L~~~i~~l~~~~~k~~e~~~~~~~~~~diD~~v~~~~~l~~Qll~l~Aed~AieDaI 131 (174)
T 2p22_A 63 AVEQAIEQTMHSLNAQIDVLTANRAKVQQFSSTSHVDDEDVNSIAVAKTDGLNQLYNLVAQDYALTDTI 131 (174)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTSSCCCSSCGGGTEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888886555543 0 1113333455677888888888888874
No 319
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=22.90 E-value=2.2e+02 Score=23.13 Aligned_cols=10 Identities=20% Similarity=0.331 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 017286 314 REIGRLRVVY 323 (374)
Q Consensus 314 ~Ei~RLr~l~ 323 (374)
.+.++++..|
T Consensus 78 ~~fQ~~qr~y 87 (97)
T 1hs7_A 78 TKYQSLQQSY 87 (97)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 320
>1tu3_F RAB GTPase binding effector protein 1; rabaptin5, effector-binding, protein transport; HET: GNP; 2.31A {Homo sapiens} SCOP: h.1.27.2
Probab=22.69 E-value=69 Score=25.53 Aligned_cols=25 Identities=12% Similarity=-0.029 Sum_probs=5.7
Q ss_pred HHhHHHHHhhHHHHHHHHHHHHHHH
Q 017286 279 QQNLILSMENKALKQRLESLAQEQL 303 (374)
Q Consensus 279 ~~~~~L~~EN~~LK~rL~aL~q~~~ 303 (374)
+.+..|...|.+||.++..|..+.-
T Consensus 5 ~~k~~Le~~~~e~k~kv~~LQ~eLd 29 (79)
T 1tu3_F 5 SAKATVEQLMFEEKNKAQRLQTELD 29 (79)
T ss_dssp ----------------CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666667777777777766544
No 321
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=22.67 E-value=2.9e+02 Score=21.87 Aligned_cols=51 Identities=24% Similarity=0.212 Sum_probs=34.4
Q ss_pred HHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 263 LQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLE 313 (374)
Q Consensus 263 LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~ 313 (374)
|+.++..-.++|..|.+....|..-...|+.-|.-|+++..--+...+.|+
T Consensus 16 l~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk 66 (78)
T 3iv1_A 16 MKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLK 66 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666677778888888888888888888888888875443333333333
No 322
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=22.60 E-value=2.9e+02 Score=21.92 Aligned_cols=17 Identities=24% Similarity=0.382 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 017286 308 EHEVLEREIGRLRVVYQ 324 (374)
Q Consensus 308 ~~E~L~~Ei~RLr~l~~ 324 (374)
.++.|+.|+..+++...
T Consensus 45 E~e~l~~El~s~~~~~~ 61 (77)
T 2w83_C 45 EKDVLQGELEAVKQAKL 61 (77)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45556666655555443
No 323
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=22.51 E-value=2.7e+02 Score=21.51 Aligned_cols=45 Identities=18% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLES 297 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~a 297 (374)
+.++..+|..|+.+...+...++..-++...|..=.-.|-..|+.
T Consensus 28 ~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIat 72 (84)
T 1gk4_A 28 AANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIAT 72 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
No 324
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=22.46 E-value=1.6e+02 Score=26.24 Aligned_cols=10 Identities=20% Similarity=0.192 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 017286 316 IGRLRVVYQQ 325 (374)
Q Consensus 316 i~RLr~l~~q 325 (374)
+...|.-++.
T Consensus 129 L~~~R~k~~~ 138 (175)
T 3lay_A 129 LDEQRVKRDV 138 (175)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 325
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=22.21 E-value=2.8e+02 Score=24.50 Aligned_cols=13 Identities=8% Similarity=0.158 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q 017286 309 HEVLEREIGRLRV 321 (374)
Q Consensus 309 ~E~L~~Ei~RLr~ 321 (374)
-+.++.+++.++.
T Consensus 114 l~~a~a~l~~a~~ 126 (277)
T 2f1m_A 114 VTAAKAAVETARI 126 (277)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444555555444
No 326
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=22.18 E-value=2.7e+02 Score=21.31 Aligned_cols=42 Identities=17% Similarity=0.193 Sum_probs=17.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHH
Q 017286 258 RNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLA 299 (374)
Q Consensus 258 rkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~ 299 (374)
.|++.|+.+.-....++..++.+.......+..+-..|.+|.
T Consensus 6 kKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~ 47 (81)
T 1ic2_A 6 KKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQ 47 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 344444444444444444444443333333333333333333
No 327
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=22.14 E-value=1.2e+02 Score=26.34 Aligned_cols=23 Identities=13% Similarity=0.018 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELE 275 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~ 275 (374)
+..||.+|..|...++.+..+|.
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~ 24 (192)
T 2gkw_A 2 TGLLESQLSRHDQMLSVHDIRLA 24 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666655555444444333
No 328
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=22.07 E-value=2.8e+02 Score=21.57 Aligned_cols=12 Identities=33% Similarity=0.432 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHH
Q 017286 311 VLEREIGRLRVV 322 (374)
Q Consensus 311 ~L~~Ei~RLr~l 322 (374)
+|..||.--|.|
T Consensus 67 ~Le~EIatYRkL 78 (86)
T 1x8y_A 67 ALDMEIHAYRKL 78 (86)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 445555544444
No 329
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=22.01 E-value=2.8e+02 Score=21.57 Aligned_cols=41 Identities=17% Similarity=0.063 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHH
Q 017286 255 ELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRL 295 (374)
Q Consensus 255 ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL 295 (374)
.+...|..|+.+...+...++..-++...|..=.-.|-..|
T Consensus 32 ~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EI 72 (86)
T 1x8y_A 32 TSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEI 72 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 33444445555555555555555445444443333333333
No 330
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=21.92 E-value=2.2e+02 Score=21.91 Aligned_cols=30 Identities=10% Similarity=0.162 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEFLNQQNL 282 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~ 282 (374)
++.+.+|++.|+.|...+..++..|++++.
T Consensus 4 m~aiKkkmqaLk~Ekdna~e~~e~lE~ERd 33 (75)
T 3mtu_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADKD 33 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677788888888777777777766544
No 331
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=21.91 E-value=49 Score=24.28 Aligned_cols=28 Identities=18% Similarity=0.329 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHH
Q 017286 266 EGTEVSAELEFLNQQNLILSMENKALKQRLESLAQ 300 (374)
Q Consensus 266 E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q 300 (374)
|++.|..-++.|+ ..|.-|...|+.|+.
T Consensus 18 enaklenivarle-------ndnanlekdianlek 45 (56)
T 3he4_A 18 ENAKLENIVARLE-------NDNANLEKDIANLEK 45 (56)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHh-------cccchHHHHHHHHHH
Confidence 5555555555554 444444444544443
No 332
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=21.42 E-value=3.6e+02 Score=23.60 Aligned_cols=61 Identities=13% Similarity=0.159 Sum_probs=31.0
Q ss_pred HhhHHHHHHHHHHHH--HhHHHHHhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017286 265 AEGTEVSAELEFLNQ--QNLILSMENKALKQRLESLAQE--QLIKCLEHEVLEREIGRLRVVYQQQQQ 328 (374)
Q Consensus 265 ~E~a~Ls~~i~~L~~--~~~~L~~EN~~LK~rL~aL~q~--~~lkda~~E~L~~Ei~RLr~l~~qqq~ 328 (374)
.|..++..+|..++. +...|.. +++.+++.+.++ ..|...-.+.....|.+||-+...|+.
T Consensus 105 me~me~rE~leea~~~~~l~~l~~---~~~~~~~~~~~~l~~~~~~~d~~~A~~~~~kL~y~~kl~~~ 169 (181)
T 3uo3_A 105 LKVLDIHDELSQMDDEAGVKLLEK---QNKERIQDIEAQLGQCYNDKDYAAAVKLTVELKYWYNLAKA 169 (181)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHH---HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHH---HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555422 1222322 333334333322 223333456778889999988877653
No 333
>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1
Probab=21.28 E-value=1.7e+02 Score=26.78 Aligned_cols=45 Identities=18% Similarity=0.123 Sum_probs=30.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017286 284 LSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRLRVVYQQQQQ 328 (374)
Q Consensus 284 L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RLr~l~~qqq~ 328 (374)
+...-.+++.+|..|..-+.--+.+++...+||-+|..-|....+
T Consensus 21 ~~~~~~~~~~~l~~L~~iQ~e~~~l~~e~~~ev~~lE~ky~~~~~ 65 (225)
T 2e50_A 21 DETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQ 65 (225)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 344455677777777766666677777777777777776666444
No 334
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=21.13 E-value=1.9e+02 Score=19.58 Aligned_cols=31 Identities=23% Similarity=0.434 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 289 KALKQRLESLAQEQLIKCLEHEVLEREIGRL 319 (374)
Q Consensus 289 ~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RL 319 (374)
++||+++.+|..+-++--.--.+|++.+..|
T Consensus 4 salkekvsalkeqflmlmfkvsalkekvsal 34 (36)
T 3tq2_A 4 SALKEKVSALKEQFLMLMFKVSALKEKVSAL 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555666655555443333334444444333
No 335
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=20.97 E-value=1.5e+02 Score=21.33 Aligned_cols=28 Identities=18% Similarity=0.204 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 017286 252 YIAELERNVQSLQAEGTEVSAELEFLNQ 279 (374)
Q Consensus 252 YI~ELErkVq~LQ~E~a~Ls~~i~~L~~ 279 (374)
.+..||..|+.||+..+-|-++.+..+.
T Consensus 6 kv~~Le~~ld~LqTr~ArLlae~~ssq~ 33 (46)
T 3swy_A 6 KVEQLGSSLDTLQTRFARLLAEYNATQM 33 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888888887777776654
No 336
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=20.64 E-value=4.3e+02 Score=23.60 Aligned_cols=43 Identities=12% Similarity=0.205 Sum_probs=26.9
Q ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 277 LNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRL 319 (374)
Q Consensus 277 L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RL 319 (374)
|.+-...|..+-..|+.-++.|+++...-+...+.|+..+..+
T Consensus 47 l~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~ 89 (174)
T 2p22_A 47 IARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKV 89 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666667777777777776665555556666544443
No 337
>3f1i_S STAM-1, signal transducing adapter molecule 1; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=20.63 E-value=3.2e+02 Score=21.61 Aligned_cols=42 Identities=21% Similarity=0.266 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHH
Q 017286 252 YIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLE 296 (374)
Q Consensus 252 YI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~ 296 (374)
.+.+||..+..+ +.-+-++|..+.+++..|+..|..+.+-|+
T Consensus 28 el~~LE~~c~~M---gplId~kLE~iDrkh~~Lteln~~~leaL~ 69 (77)
T 3f1i_S 28 ELLHLEAMCHQM---GPLIDEKLEDIDRKHSELSELNVKVMEALS 69 (77)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777654 445557888888899999888888776664
No 338
>3pbf_A Pulmonary surfactant-associated protein A; collectin, carbohydrate binding, lectin, mannose, sugar BIND protein; 1.80A {Rattus norvegicus} PDB: 1r14_A* 1r13_A* 3paq_A* 3par_A 3pak_A
Probab=20.50 E-value=69 Score=25.64 Aligned_cols=24 Identities=13% Similarity=0.155 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHH
Q 017286 253 IAELERNVQSLQAEGTEVSAELEF 276 (374)
Q Consensus 253 I~ELErkVq~LQ~E~a~Ls~~i~~ 276 (374)
+++|+++++.|+.+++.|...|.+
T Consensus 4 ~e~l~~~~~~l~~~l~~~~~~~~~ 27 (148)
T 3pbf_A 4 DEELQTELYEIKHQILQTMGVLSL 27 (148)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888988888888888843
No 339
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=20.08 E-value=3.4e+02 Score=21.70 Aligned_cols=80 Identities=13% Similarity=0.153 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017286 240 QFAQRSRVRKLQYIAELERNVQSLQAEGTEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKCLEHEVLEREIGRL 319 (374)
Q Consensus 240 qSAqRSR~RKlqYI~ELErkVq~LQ~E~a~Ls~~i~~L~~~~~~L~~EN~~LK~rL~aL~q~~~lkda~~E~L~~Ei~RL 319 (374)
+.-+--+..-+.-..++|.+++.++.+...+-.+|..|++....|..|=-.+..+|....+..-..+-.-...+.||.-|
T Consensus 12 ~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L 91 (101)
T 3u1c_A 12 QMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASL 91 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444555666666666666666666666666666666655555555555544444333333334444566555
Done!