Query 017287
Match_columns 374
No_of_seqs 186 out of 1387
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 12:00:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017287.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017287hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f3j_A RNA and export factor b 11.5 80 0.0027 26.6 1.3 13 1-13 21-33 (177)
2 1p4q_A CBP/P300-interacting tr 9.9 91 0.0031 21.0 0.8 17 50-66 29-46 (52)
3 2v0f_A Chromodomain-helicase-D 9.6 60 0.002 24.7 -0.2 13 54-66 38-50 (87)
4 3h3g_B Parathyroid hormone-rel 8.2 1.3E+02 0.0044 17.2 0.9 8 2-9 3-10 (24)
5 2yvc_D Neprilysin; protein-pep 8.0 71 0.0024 18.2 -0.2 7 1-7 7-13 (26)
6 2jp3_A FXYD domain-containing 7.3 3.9E+02 0.013 19.1 3.3 29 237-265 13-41 (67)
7 2ckc_A Chromodomain-helicase-D 7.2 51 0.0018 24.5 -1.4 11 55-65 47-57 (80)
8 2zxe_G FXYD10, phospholemman-l 6.8 3.6E+02 0.012 19.7 2.9 29 237-265 15-43 (74)
9 2jo1_A Phospholemman; FXYD1, N 6.5 4.2E+02 0.014 19.2 3.1 28 237-264 12-39 (72)
10 1r8u_A CBP/P300-interacting tr 5.1 1.8E+02 0.0062 19.4 0.4 16 51-66 18-34 (50)
No 1
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=11.51 E-value=80 Score=26.59 Aligned_cols=13 Identities=46% Similarity=0.575 Sum_probs=10.0
Q ss_pred CchhHHHhhhcCC
Q 017287 1 MSLREITRRKMNQ 13 (374)
Q Consensus 1 ~~~~~~~~~~~~~ 13 (374)
|||.||+|+++++
T Consensus 21 ~sLDdii~~~r~~ 33 (177)
T 2f3j_A 21 MSLDDIIKLNRNQ 33 (177)
T ss_dssp CCHHHHHHHHHTC
T ss_pred cCHHHHHhhcccC
Confidence 8999999765543
No 2
>1p4q_A CBP/P300-interacting transactivator 2; helix, protein-protein complex, transcription/transferase complex; NMR {Homo sapiens} SCOP: j.96.1.1
Probab=9.86 E-value=91 Score=21.01 Aligned_cols=17 Identities=47% Similarity=0.843 Sum_probs=12.4
Q ss_pred cceecccCCc-hhhcCCc
Q 017287 50 GLVSFWELPE-YMKDNEY 66 (374)
Q Consensus 50 ~L~~~~elP~-~l~dN~y 66 (374)
.|=+.+|+|+ |+-.|+|
T Consensus 29 GLdRv~ELPEL~LgqnEf 46 (52)
T 1p4q_A 29 GLDRIKELPELWLGQNEF 46 (52)
T ss_dssp TSSSCSSCCCCCSCCSTT
T ss_pred hhHHHHHhHHHHhCcchh
Confidence 3446789999 6777876
No 3
>2v0f_A Chromodomain-helicase-DNA-binding protein 7; nucleotide-binding, chromatin regulator, charge syndrome, phosphorylation, disease mutation; NMR {Homo sapiens} SCOP: d.76.2.1
Probab=9.55 E-value=60 Score=24.73 Aligned_cols=13 Identities=23% Similarity=0.621 Sum_probs=10.8
Q ss_pred cccCCchhhcCCc
Q 017287 54 FWELPEYMKDNEY 66 (374)
Q Consensus 54 ~~elP~~l~dN~y 66 (374)
..+++.|+++||-
T Consensus 38 l~~L~~WL~~nP~ 50 (87)
T 2v0f_A 38 MKDLPRWLEENPE 50 (87)
T ss_dssp GGGHHHHHHHCTT
T ss_pred hHHHHHHHHHCCC
Confidence 4688899999984
No 4
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=8.17 E-value=1.3e+02 Score=17.22 Aligned_cols=8 Identities=38% Similarity=0.883 Sum_probs=3.6
Q ss_pred chhHHHhh
Q 017287 2 SLREITRR 9 (374)
Q Consensus 2 ~~~~~~~~ 9 (374)
|+||++||
T Consensus 3 s~Q~~rRr 10 (24)
T 3h3g_B 3 SIQDLRRR 10 (26)
T ss_dssp CHHHHHHH
T ss_pred cHHHHHHH
Confidence 44444443
No 5
>2yvc_D Neprilysin; protein-peptide complex, cell adhesion; 3.20A {Mus musculus}
Probab=8.03 E-value=71 Score=18.21 Aligned_cols=7 Identities=29% Similarity=0.695 Sum_probs=3.1
Q ss_pred CchhHHH
Q 017287 1 MSLREIT 7 (374)
Q Consensus 1 ~~~~~~~ 7 (374)
|.|.||+
T Consensus 7 mditdin 13 (26)
T 2yvc_D 7 MDITDIN 13 (26)
T ss_pred ccccccc
Confidence 3444444
No 6
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=7.30 E-value=3.9e+02 Score=19.12 Aligned_cols=29 Identities=21% Similarity=-0.211 Sum_probs=17.6
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHhcccc
Q 017287 237 CEPRWHFIYLGGVTALGIFTIVTLLSPAL 265 (374)
Q Consensus 237 c~~~~~~~y~~~i~~l~l~~i~~~l~~~~ 265 (374)
++..++..=+++..++.++|++..++.++
T Consensus 13 DY~tLRigGLifA~vLfi~GI~iilS~kc 41 (67)
T 2jp3_A 13 DWESLQLGGLIFGGLLCIAGIALALSGKC 41 (67)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred chHHheecchhhHHHHHHHHHHHHHcCcc
Confidence 45566665555555666677776665443
No 7
>2ckc_A Chromodomain-helicase-DNA-binding protein 7; protein-protein interaction, phosphorylation, disease mutation, nucleotide-binding; NMR {Homo sapiens} SCOP: d.76.2.1 PDB: 2v0e_A
Probab=7.15 E-value=51 Score=24.51 Aligned_cols=11 Identities=27% Similarity=0.359 Sum_probs=9.3
Q ss_pred ccCCchhhcCC
Q 017287 55 WELPEYMKDNE 65 (374)
Q Consensus 55 ~elP~~l~dN~ 65 (374)
+++++|||+||
T Consensus 47 KdL~dWLrqhP 57 (80)
T 2ckc_A 47 KDLVEWLKLHP 57 (80)
T ss_dssp HHHHHHHHHCT
T ss_pred cCHHHHHHHCC
Confidence 57889999987
No 8
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=6.81 E-value=3.6e+02 Score=19.73 Aligned_cols=29 Identities=21% Similarity=0.104 Sum_probs=18.1
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHhcccc
Q 017287 237 CEPRWHFIYLGGVTALGIFTIVTLLSPAL 265 (374)
Q Consensus 237 c~~~~~~~y~~~i~~l~l~~i~~~l~~~~ 265 (374)
++..++..=+++..++.++|++..++.++
T Consensus 15 DY~tLRigGLifA~vLfi~GI~iilS~kc 43 (74)
T 2zxe_G 15 DYYRLRVVGLIVAAVLCVIGIIILLAGKC 43 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred chHHheeccchhHHHHHHHHHHHHHcCcc
Confidence 44566665555556677777777776554
No 9
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=6.45 E-value=4.2e+02 Score=19.19 Aligned_cols=28 Identities=21% Similarity=-0.039 Sum_probs=16.2
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHhccc
Q 017287 237 CEPRWHFIYLGGVTALGIFTIVTLLSPA 264 (374)
Q Consensus 237 c~~~~~~~y~~~i~~l~l~~i~~~l~~~ 264 (374)
++..++..=+++..++.++|++..++.+
T Consensus 12 DY~tLRiGGLifA~vLfi~GI~iilS~K 39 (72)
T 2jo1_A 12 DYQSLQIGGLVIAGILFILGILIVLSRR 39 (72)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHhhccchHHHHHHHHHHHHHHHcCc
Confidence 4556666555555556666666665543
No 10
>1r8u_A CBP/P300-interacting transactivator 2; zinc-binding motifs, protein-protein complex, TAZ zinc finger, transcription/transcription activator complex; NMR {Homo sapiens} SCOP: j.96.1.1
Probab=5.06 E-value=1.8e+02 Score=19.41 Aligned_cols=16 Identities=44% Similarity=0.758 Sum_probs=11.2
Q ss_pred ceecccCCc-hhhcCCc
Q 017287 51 LVSFWELPE-YMKDNEY 66 (374)
Q Consensus 51 L~~~~elP~-~l~dN~y 66 (374)
|=+..|+|+ |+-.|+|
T Consensus 18 LdRv~ELPEL~LgqnEf 34 (50)
T 1r8u_A 18 LDRIKELPELWLGQNEF 34 (50)
T ss_dssp GGGCCSCCCCCTTSGGG
T ss_pred hHHHHHhHHHHhccchH
Confidence 446789998 5666765
Done!