Query 017287
Match_columns 374
No_of_seqs 186 out of 1387
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 12:00:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017287.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017287hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tdja2 d.58.18.2 (A:336-423) 17.3 14 0.001 26.4 0.1 13 322-336 5-17 (88)
2 d1ik7a_ a.77.1.2 (A:) Pelle de 16.8 40 0.0029 21.4 2.3 32 337-368 11-44 (52)
3 d2tpta1 a.46.2.1 (A:1-70) Thym 16.0 26 0.0019 23.3 1.4 17 1-17 2-18 (70)
4 d2e74g1 f.23.26.1 (G:9-35) Pet 10.9 88 0.0064 16.6 2.3 15 311-325 3-17 (27)
5 d1bu2a2 a.74.1.1 (A:149-250) V 10.7 15 0.0011 25.8 -1.3 13 321-333 11-23 (102)
6 d1tdja3 d.58.18.2 (A:424-514) 10.4 22 0.0016 25.5 -0.6 13 322-336 12-24 (91)
7 d2ckca1 d.76.2.1 (A:2563-2622) 9.6 15 0.0011 24.3 -1.5 13 54-66 26-38 (60)
8 d2v0fa1 d.76.2.1 (A:2629-2715) 9.4 29 0.0021 24.7 -0.2 26 54-83 38-63 (87)
9 d1brwa1 a.46.2.1 (A:1-70) Pyri 7.9 69 0.0051 20.9 1.4 17 1-17 1-17 (70)
10 d2ckaa1 d.76.2.1 (A:2028-2085) 7.6 21 0.0015 23.5 -1.5 12 54-65 28-39 (58)
No 1
>d1tdja2 d.58.18.2 (A:336-423) Allosteric threonine deaminase C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=17.29 E-value=14 Score=26.42 Aligned_cols=13 Identities=38% Similarity=0.697 Sum_probs=10.5
Q ss_pred hhhccCCccCCCCcc
Q 017287 322 FYVTRIPERWKPGWF 336 (374)
Q Consensus 322 fY~~r~PEr~~PG~F 336 (374)
+|+..+||| ||.|
T Consensus 5 l~~v~iPEr--pGaf 17 (88)
T d1tdja2 5 LLAVTIPEE--KGSF 17 (88)
T ss_dssp EEEEECCBS--SSCS
T ss_pred EEEEEcCCC--ccHH
Confidence 467789998 9975
No 2
>d1ik7a_ a.77.1.2 (A:) Pelle death domain {Drosophila melanogaster [TaxId: 7227]}
Probab=16.77 E-value=40 Score=21.41 Aligned_cols=32 Identities=19% Similarity=0.370 Sum_probs=26.1
Q ss_pred cCCCC--chhHHHHHHHHHHHHHHHHHHHHHHHH
Q 017287 337 DLAGH--SHQIFHVFVVFGALAHYSATLVFLEWR 368 (374)
Q Consensus 337 D~~G~--SHqiwHi~Vv~g~~~h~~a~~~~~~~r 368 (374)
++||+ .|.|--+|+++.-.-|+.|+...-++.
T Consensus 11 ~~Wg~q~NHTi~eLF~ll~~mk~~~aM~iiK~~V 44 (52)
T d1ik7a_ 11 NIWGGQYNHTVQTLFALFKKLKLHNAMRLIKDYV 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCcccccHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 56776 899999999999999999987554443
No 3
>d2tpta1 a.46.2.1 (A:1-70) Thymidine phosphorylase {Escherichia coli [TaxId: 562]}
Probab=15.96 E-value=26 Score=23.29 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=13.2
Q ss_pred CchhHHHhhhcCCcccc
Q 017287 1 MSLREITRRKMNQETTT 17 (374)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (374)
|.+|||.+||.+++.-+
T Consensus 2 ~~~qeiI~k~~~g~~Ls 18 (70)
T d2tpta1 2 FLAQEIIRKKRDGHALS 18 (70)
T ss_dssp CCHHHHHHHHHTTCCCC
T ss_pred CCHHHHHHHHHCCCCcC
Confidence 46789998888887663
No 4
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=10.85 E-value=88 Score=16.60 Aligned_cols=15 Identities=27% Similarity=0.487 Sum_probs=9.6
Q ss_pred HHHHHHHHhHhhhhc
Q 017287 311 AMALFYLTGTMFYVT 325 (374)
Q Consensus 311 ~~~~~y~~G~~fY~~ 325 (374)
++.++..+|..||+.
T Consensus 3 lgli~~tl~glf~aa 17 (27)
T d2e74g1 3 LGLVFATLGGLFYAA 17 (27)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHH
Confidence 345556677777765
No 5
>d1bu2a2 a.74.1.1 (A:149-250) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]}
Probab=10.69 E-value=15 Score=25.81 Aligned_cols=13 Identities=31% Similarity=0.524 Sum_probs=10.9
Q ss_pred hhhhccCCccCCC
Q 017287 321 MFYVTRIPERWKP 333 (374)
Q Consensus 321 ~fY~~r~PEr~~P 333 (374)
+..+.|+||.+||
T Consensus 11 ~c~alkipe~~wp 23 (102)
T d1bu2a2 11 LCNALKIPEDLWP 23 (102)
T ss_dssp HHHHTTCCTTSHH
T ss_pred hhhhccCcHHHhH
Confidence 3567899999998
No 6
>d1tdja3 d.58.18.2 (A:424-514) Allosteric threonine deaminase C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=10.42 E-value=22 Score=25.50 Aligned_cols=13 Identities=38% Similarity=0.810 Sum_probs=9.9
Q ss_pred hhhccCCccCCCCcc
Q 017287 322 FYVTRIPERWKPGWF 336 (374)
Q Consensus 322 fY~~r~PEr~~PG~F 336 (374)
+|...+||| ||.|
T Consensus 12 l~~v~iPEr--pGal 24 (91)
T d1tdja3 12 LYSFEFPES--PGAL 24 (91)
T ss_dssp EEEEECCCC--TTHH
T ss_pred EEEEECCCC--ccHH
Confidence 567789998 8843
No 7
>d2ckca1 d.76.2.1 (A:2563-2622) Chromodomain-helicase-DNA-binding protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.61 E-value=15 Score=24.32 Aligned_cols=13 Identities=23% Similarity=0.176 Sum_probs=10.7
Q ss_pred cccCCchhhcCCc
Q 017287 54 FWELPEYMKDNEY 66 (374)
Q Consensus 54 ~~elP~~l~dN~y 66 (374)
.+|+.+||++||=
T Consensus 26 ~~~L~~WL~~hP~ 38 (60)
T d2ckca1 26 NKDLVEWLKLHPT 38 (60)
T ss_dssp HHHHHHHHHHCTT
T ss_pred HHHHHHHHHHCCC
Confidence 4688899999983
No 8
>d2v0fa1 d.76.2.1 (A:2629-2715) Chromodomain-helicase-DNA-binding protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.36 E-value=29 Score=24.65 Aligned_cols=26 Identities=12% Similarity=0.280 Sum_probs=17.4
Q ss_pred cccCCchhhcCCcccCCccCCCCHHHHHHH
Q 017287 54 FWELPEYMKDNEYVLHYYRANWPIKEALFS 83 (374)
Q Consensus 54 ~~elP~~l~dN~yI~~GYR~~~s~~~cl~S 83 (374)
.++|.+||++|| +|=..-.+.+|+++
T Consensus 38 ~~~L~~WL~~nP----~y~V~P~w~~~vk~ 63 (87)
T d2v0fa1 38 MKDLPRWLEENP----EFAVAPDWTDIVKQ 63 (87)
T ss_dssp GGGHHHHHHHCT----TEEECHHHHHHHHH
T ss_pred HHHHHHHHHHCC----CceeCccHHHHHhh
Confidence 568889999998 55443345555553
No 9
>d1brwa1 a.46.2.1 (A:1-70) Pyrimidine nucleoside phosphorylase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=7.95 E-value=69 Score=20.92 Aligned_cols=17 Identities=18% Similarity=0.347 Sum_probs=12.5
Q ss_pred CchhHHHhhhcCCcccc
Q 017287 1 MSLREITRRKMNQETTT 17 (374)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (374)
|...||.++|.+++.-+
T Consensus 1 M~~~eii~k~~~g~~Ls 17 (70)
T d1brwa1 1 MRMVDLIAKKRDGKALT 17 (70)
T ss_dssp CCHHHHHHHHHTTCCCC
T ss_pred CCHHHHHHHHHcCCCCC
Confidence 67788888888776653
No 10
>d2ckaa1 d.76.2.1 (A:2028-2085) Chromodomain-helicase-dna-binding protein 8, CHD8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.59 E-value=21 Score=23.46 Aligned_cols=12 Identities=17% Similarity=0.210 Sum_probs=9.9
Q ss_pred cccCCchhhcCC
Q 017287 54 FWELPEYMKDNE 65 (374)
Q Consensus 54 ~~elP~~l~dN~ 65 (374)
.+++..||++||
T Consensus 28 ~~~L~~WL~~nP 39 (58)
T d2ckaa1 28 RAELEMWLQGHP 39 (58)
T ss_dssp HHHHHHHHHHCT
T ss_pred HHHHHHHHHHCC
Confidence 467888999987
Done!