BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017289
(374 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WUA|A Chain A, Structure Of The Peroxisomal 3-Ketoacyl-Coa Thiolase From
Sunflower
pdb|2WUA|B Chain B, Structure Of The Peroxisomal 3-Ketoacyl-Coa Thiolase From
Sunflower
Length = 440
Score = 517 bits (1332), Expect = e-147, Method: Compositional matrix adjust.
Identities = 253/345 (73%), Positives = 287/345 (83%)
Query: 19 SSQTSDSPAISASICSAGEAAGYHRKPAFDDDVVIVAAYRTAICKAKRGGFKDTLADDLL 78
SS +S +S S+C+AG++A Y R F DDVVIVAAYR+ +CKAKRGG KDT DD+L
Sbjct: 3 SSTSSSLENLSVSVCAAGDSAAYQRNSVFGDDVVIVAAYRSPLCKAKRGGLKDTYPDDIL 62
Query: 79 APVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCS 138
APVLKA+IEKT +NP+EVGDIVVG+VL GS RA ECRMAAFYAGFPETVP+RTVNRQCS
Sbjct: 63 APVLKALIEKTNINPAEVGDIVVGSVLGAGSQRASECRMAAFYAGFPETVPVRTVNRQCS 122
Query: 139 SGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGIT 198
SGLQAVADVA AIKAG YDIGI AGLESMT N ++ G VNPKV+ QA+DCLLPMGIT
Sbjct: 123 SGLQAVADVAAAIKAGFYDIGIGAGLESMTANPMAWEGSVNPKVKTMAQAQDCLLPMGIT 182
Query: 199 SENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTIS 258
SENVAQ+F +TRQEQD G+FKDEIIP+ TKIVDPKTG EK VTIS
Sbjct: 183 SENVAQKFSITRQEQDQAAVGSHRKTAAATAAGRFKDEIIPIKTKIVDPKTGDEKPVTIS 242
Query: 259 VDDGIRPNTTIADLAKLKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGV 318
VDDGIRP T++ADLAKLKP F+KDG+TTAG +SQVSDGAGAVLLMKRS+A+QKGLPILGV
Sbjct: 243 VDDGIRPGTSLADLAKLKPVFRKDGSTTAGTSSQVSDGAGAVLLMKRSIALQKGLPILGV 302
Query: 319 FRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEVL 363
FR+F+AVGV PS+MGIGPAVAIPAAVK+AGLQIDDI+LFEINE
Sbjct: 303 FRTFAAVGVPPSIMGIGPAVAIPAAVKAAGLQIDDIDLFEINEAF 347
>pdb|2WU9|A Chain A, Crystal Structure Of Peroxisomal Kat2 From Arabidopsis
Thaliana
pdb|2WU9|B Chain B, Crystal Structure Of Peroxisomal Kat2 From Arabidopsis
Thaliana
Length = 442
Score = 506 bits (1303), Expect = e-144, Method: Compositional matrix adjust.
Identities = 247/329 (75%), Positives = 279/329 (84%)
Query: 35 AGEAAGYHRKPAFDDDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPS 94
AG++A Y R + DDVVIVAA+RT +CK+KRG FKDT DDLLAPVL+A+IEKT LNPS
Sbjct: 16 AGDSAAYQRTSLYGDDVVIVAAHRTPLCKSKRGNFKDTYPDDLLAPVLRALIEKTNLNPS 75
Query: 95 EVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAG 154
EVGDIVVGTVLAPGS RA ECRMAAFYAGFPETV +RTVNRQCSSGLQAVADVA AIKAG
Sbjct: 76 EVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVAVRTVNRQCSSGLQAVADVAAAIKAG 135
Query: 155 LYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQD 214
YDIGI AGLESMT N ++ G VNP V+ F QA++CLLPMG+TSENVAQRFGV+RQEQD
Sbjct: 136 FYDIGIGAGLESMTTNPMAWEGSVNPAVKKFAQAQNCLLPMGVTSENVAQRFGVSRQEQD 195
Query: 215 LXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAK 274
GKFKDEIIPV TK+VDPKTG EK +T+SVDDGIRP TT+A L K
Sbjct: 196 QAAVDSHRKAAAATAAGKFKDEIIPVKTKLVDPKTGDEKPITVSVDDGIRPTTTLASLGK 255
Query: 275 LKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGI 334
LKP FKKDGTTTAGN+SQVSDGAGAVLLMKRS+A+QKGLP+LGVFR+F+AVGVDP++MGI
Sbjct: 256 LKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMQKGLPVLGVFRTFAAVGVDPAIMGI 315
Query: 335 GPAVAIPAAVKSAGLQIDDINLFEINEVL 363
GPAVAIPAAVK+AGL++DDI+LFEINE
Sbjct: 316 GPAVAIPAAVKAAGLELDDIDLFEINEAF 344
>pdb|2C7Y|A Chain A, Plant Enzyme
pdb|2C7Y|B Chain B, Plant Enzyme
pdb|2C7Z|A Chain A, Plant Enzyme Crystal Form Ii
Length = 404
Score = 502 bits (1293), Expect = e-142, Method: Compositional matrix adjust.
Identities = 245/327 (74%), Positives = 277/327 (84%)
Query: 37 EAAGYHRKPAFDDDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEV 96
++A Y R + DDVVIVAA+RT +CK+KRG FKDT DDLLAPVL+A+IEKT LNPSEV
Sbjct: 1 DSAAYQRTSLYGDDVVIVAAHRTPLCKSKRGNFKDTYPDDLLAPVLRALIEKTNLNPSEV 60
Query: 97 GDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLY 156
GDIVVGTVLAPGS RA ECRMAAFYAGFPETV +RTVNRQCSSGLQAVADVA AIKAG Y
Sbjct: 61 GDIVVGTVLAPGSQRASECRMAAFYAGFPETVAVRTVNRQCSSGLQAVADVAAAIKAGFY 120
Query: 157 DIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLX 216
DIGI AGLESMT N ++ G VNP V+ F QA++CLLPMG+TSENVAQRFGV+RQEQD
Sbjct: 121 DIGIGAGLESMTTNPMAWEGSVNPAVKKFAQAQNCLLPMGVTSENVAQRFGVSRQEQDQA 180
Query: 217 XXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLK 276
GKFKDEIIPV TK+VDPKTG EK +T+SVDDGIRP TT+A L KLK
Sbjct: 181 AVDSHRKAAAATAAGKFKDEIIPVKTKLVDPKTGDEKPITVSVDDGIRPTTTLASLGKLK 240
Query: 277 PAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGP 336
P FKKDGTTTAGN+SQVSDGAGAVLLMKRS+A+QKGLP+LGVFR+F+AVGVDP++MGIGP
Sbjct: 241 PVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMQKGLPVLGVFRTFAAVGVDPAIMGIGP 300
Query: 337 AVAIPAAVKSAGLQIDDINLFEINEVL 363
AVAIPAAVK+AGL++DDI+LFEINE
Sbjct: 301 AVAIPAAVKAAGLELDDIDLFEINEAF 327
>pdb|2IIK|A Chain A, Crystal Structure Of Human Peroxisomal Acetyl-Coa Acyl
Transferase 1 (Acaa1)
pdb|2IIK|B Chain B, Crystal Structure Of Human Peroxisomal Acetyl-Coa Acyl
Transferase 1 (Acaa1)
Length = 418
Score = 345 bits (884), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 172/314 (54%), Positives = 226/314 (71%), Gaps = 2/314 (0%)
Query: 50 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGS 109
DVV+V RTAIC+A RGGFKDT D+LL+ V+ AV++ L P ++GDI VG VL PG+
Sbjct: 31 DVVVVHGRRTAICRAGRGGFKDTTPDELLSAVMTAVLKDVNLRPEQLGDICVGNVLQPGA 90
Query: 110 TRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTV 169
A+ R+A F + PETVPL TVNRQCSSGLQAVA +A I+ G YDIG+A G+ESM++
Sbjct: 91 G-AIMARIAQFLSDIPETVPLSTVNRQCSSGLQAVASIAGGIRNGSYDIGMACGVESMSL 149
Query: 170 NSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXX 229
G + ++ +ARDCL+PMGITSENVA+RFG++R++QD
Sbjct: 150 ADRGNPGNITSRLMEKEKARDCLIPMGITSENVAERFGISREKQDTFALASQQKAARAQS 209
Query: 230 XGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKKDGTTTAGN 289
G F+ EI+PV T + D K G ++ +T++ D+GIRP+TT+ LAKLKPAFKKDG+TTAGN
Sbjct: 210 KGCFQAEIVPVTTTVHDDK-GTKRSITVTQDEGIRPSTTMEGLAKLKPAFKKDGSTTAGN 268
Query: 290 ASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGL 349
+SQVSDGA A+LL +RS A + GLPILGV RS++ VGV P +MGIGPA AIP A++ AGL
Sbjct: 269 SSQVSDGAAAILLARRSKAEELGLPILGVLRSYAVVGVPPDIMGIGPAYAIPVALQKAGL 328
Query: 350 QIDDINLFEINEVL 363
+ D+++FEINE
Sbjct: 329 TVSDVDIFEINEAF 342
>pdb|1AFW|A Chain A, The 1.8 Angstrom Crystal Structure Of The Dimeric
Peroxisomal Thiolase Of Saccharomyces Cerevisiae
pdb|1AFW|B Chain B, The 1.8 Angstrom Crystal Structure Of The Dimeric
Peroxisomal Thiolase Of Saccharomyces Cerevisiae
Length = 393
Score = 243 bits (621), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 143/323 (44%), Positives = 195/323 (60%), Gaps = 18/323 (5%)
Query: 49 DDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVI----EKTRLNPSEVGDIVVGTV 104
+DVVIVAA R+AI K +G FKD D LL L I E R + + + ++ G V
Sbjct: 10 EDVVIVAANRSAIGKGFKGAFKDVNTDYLLYNFLNEFIGRFPEPLRADLNLIEEVACGNV 69
Query: 105 LAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGL 164
L G+ A E R A +G P + P +NRQCSSGL AV D+A IK G DIG+A G+
Sbjct: 70 LNVGAG-ATEHRAACLASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALGV 128
Query: 165 ESMTVN--SISVVGQVN-PKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXX 221
ESMT N +++ +G ++ +++ +A+ CL+PMGIT+ENVA F ++R++QD
Sbjct: 129 ESMTNNYKNVNPLGMISSEELQKNREAKKCLIPMGITNENVAANFKISRKDQDEFAANSY 188
Query: 222 XXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKK 281
G F+DEI+P+ K+ D D+G RPN T L+ ++PAF K
Sbjct: 189 QKAYKAKNEGLFEDEILPI--KLPDGSI-------CQSDEGPRPNVTAESLSSIRPAFIK 239
Query: 282 D-GTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAI 340
D GTTTAGNASQVSDG VLL +RS+A Q LP+LG + F VGV P +MG+GPA AI
Sbjct: 240 DRGTTTAGNASQVSDGVAGVLLARRSVANQLNLPVLGRYIDFQTVGVPPEIMGVGPAYAI 299
Query: 341 PAAVKSAGLQIDDINLFEINEVL 363
P +++ GLQ+ DI++FEINE
Sbjct: 300 PKVLEATGLQVQDIDIFEINEAF 322
>pdb|1PXT|A Chain A, The 2.8 Angstroms Structure Of Peroxisomal 3-Ketoacyl-Coa
Thiolase Of Saccharomyces Cerevisiae: A Five Layered
A-B-A- B-A Structure, Constructed From Two Core Domains
Of Identical Topology
pdb|1PXT|B Chain B, The 2.8 Angstroms Structure Of Peroxisomal 3-Ketoacyl-Coa
Thiolase Of Saccharomyces Cerevisiae: A Five Layered
A-B-A- B-A Structure, Constructed From Two Core Domains
Of Identical Topology
Length = 390
Score = 243 bits (621), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 143/323 (44%), Positives = 195/323 (60%), Gaps = 18/323 (5%)
Query: 49 DDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVI----EKTRLNPSEVGDIVVGTV 104
+DVVIVAA R+AI K +G FKD D LL L I E R + + + ++ G V
Sbjct: 7 EDVVIVAANRSAIGKGFKGAFKDVNTDYLLYNFLNEFIGRFPEPLRADLNLIEEVACGNV 66
Query: 105 LAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGL 164
L G+ A E R A +G P + P +NRQCSSGL AV D+A IK G DIG+A G+
Sbjct: 67 LNVGAG-ATEHRAACLASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALGV 125
Query: 165 ESMTVN--SISVVGQVN-PKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXX 221
ESMT N +++ +G ++ +++ +A+ CL+PMGIT+ENVA F ++R++QD
Sbjct: 126 ESMTNNYKNVNPLGMISSEELQKNREAKKCLIPMGITNENVAANFKISRKDQDEFAANSY 185
Query: 222 XXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKK 281
G F+DEI+P+ K+ D D+G RPN T L+ ++PAF K
Sbjct: 186 QKAYKAKNEGLFEDEILPI--KLPDGSI-------CQSDEGPRPNVTAESLSSIRPAFIK 236
Query: 282 D-GTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAI 340
D GTTTAGNASQVSDG VLL +RS+A Q LP+LG + F VGV P +MG+GPA AI
Sbjct: 237 DRGTTTAGNASQVSDGVAGVLLARRSVANQLNLPVLGRYIDFQTVGVPPEIMGVGPAYAI 296
Query: 341 PAAVKSAGLQIDDINLFEINEVL 363
P +++ GLQ+ DI++FEINE
Sbjct: 297 PKVLEATGLQVQDIDIFEINEAF 319
>pdb|1M1T|A Chain A, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|B Chain B, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|C Chain C, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|D Chain D, Biosynthetic Thiolase, Q64a Mutant
Length = 392
Score = 184 bits (468), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 122/323 (37%), Positives = 176/323 (54%), Gaps = 18/323 (5%)
Query: 51 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGST 110
+VI +A RTA+ + G F +T A +L A V+ AV+E+ + EV ++++G VL P
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 62
Query: 111 RAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVN 170
A R AA AG P+ +N+ C SGL+AVA I G I +A G+ESM++
Sbjct: 63 GANPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 171 SISVVGQVNPKVEIF----TQARDCL------LPMGITSENVAQRFGVTRQEQDLXXXXX 220
+ K+ F T +D L MG T+ENVA+++ ++R EQD
Sbjct: 123 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 182
Query: 221 XXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFK 280
G+FKDEI+P K G + +T+ D+ IR T+ +AKL+PAF
Sbjct: 183 QNKAEAAQKDGRFKDEIVPFIVK------GRKGDITVDADEYIRHGATLDSMAKLRPAFD 236
Query: 281 KDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAI 340
K+GT TAGNAS ++DGA A LLM + A ++G+ LG S++ VGVDP VMG GP A
Sbjct: 237 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 296
Query: 341 PAAVKSAGLQIDDINLFEINEVL 363
A++ AG +I D++L E NE
Sbjct: 297 RKALERAGWKIGDLDLVEANEAF 319
>pdb|4E1L|A Chain A, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|B Chain B, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|C Chain C, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|D Chain D, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
Length = 395
Score = 184 bits (467), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 127/331 (38%), Positives = 182/331 (54%), Gaps = 30/331 (9%)
Query: 50 DVVIVAAYRTAICKAKRGG-FKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPG 108
DVVIV+A RT I GG FK+T A L +K I + LN SE+ ++++G VL G
Sbjct: 6 DVVIVSAVRTPI--GSFGGVFKNTSAVQLGTIAVKEAISRVGLNLSEIDEVIIGNVLQTG 63
Query: 109 STRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT 168
+ + R A AG P +VP TVN+ C SGL++V A +I +G D+ IA G E+M+
Sbjct: 64 LGQNV-ARQIAINAGIPNSVPSYTVNKLCGSGLKSVQLAAQSITSGENDVVIAGGTENMS 122
Query: 169 --------------VNSISVVGQV--NPKVEIFTQARDCLLPMGITSENVAQRFGVTRQE 212
+ +I++V + + ++ F Q MGIT+EN+A +F TR+
Sbjct: 123 QAPYIVPTARFGSKMGNITMVDSMLTDGLIDAFNQYH-----MGITAENIATKFEFTREM 177
Query: 213 QDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADL 272
QD +FK+EI+PV+ I K +E TI D+ + T L
Sbjct: 178 QDKLALESQNKAENAIKNNRFKEEIVPVDVLIRRGK--IE---TIDKDEYPKLGMTFEGL 232
Query: 273 AKLKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVM 332
+KLKPAFKKDGT TAGNAS ++DGA ++LM + A + G+ L +S+++ GV+P VM
Sbjct: 233 SKLKPAFKKDGTVTAGNASGINDGAAMLILMSQQKADELGIRPLAKIKSYASAGVEPEVM 292
Query: 333 GIGPAVAIPAAVKSAGLQIDDINLFEINEVL 363
G GP A A+K AGL I+DI+L E NE
Sbjct: 293 GTGPIPATRKALKKAGLSINDIDLIEANEAF 323
>pdb|1DLU|A Chain A, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|B Chain B, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|C Chain C, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|D Chain D, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLV|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
Length = 389
Score = 182 bits (463), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 121/323 (37%), Positives = 176/323 (54%), Gaps = 18/323 (5%)
Query: 51 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGST 110
+VI +A RTA+ + G F +T A +L A V+ AV+E+ + EV ++++G VL G
Sbjct: 2 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEG 60
Query: 111 RAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVN 170
+ R AA AG P+ +N+ C SGL+AVA I G I +A G+ESM++
Sbjct: 61 QN-PARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 119
Query: 171 SISVVGQVNPKVEIF----TQARDCL------LPMGITSENVAQRFGVTRQEQDLXXXXX 220
+ K+ F T +D L MG T+ENVA+++ ++R EQD
Sbjct: 120 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 179
Query: 221 XXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFK 280
G+FKDEI+P K G + +T+ D+ IR T+ +AKL+PAF
Sbjct: 180 QNKAEAAQKDGRFKDEIVPFIVK------GRKGDITVDADEYIRHGATLDSMAKLRPAFD 233
Query: 281 KDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAI 340
K+GT TAGNAS ++DGA A LLM + A ++G+ LG S++ VGVDP VMG GP A
Sbjct: 234 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 293
Query: 341 PAAVKSAGLQIDDINLFEINEVL 363
A++ AG +I D++L E NE
Sbjct: 294 RKALERAGWKIGDLDLVEANEAF 316
>pdb|1WDK|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDK|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDL|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDL|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDM|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|1WDM|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|2D3T|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
pdb|2D3T|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
Length = 390
Score = 182 bits (463), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 117/319 (36%), Positives = 173/319 (54%), Gaps = 15/319 (4%)
Query: 50 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEK-TRLNPSEVGDIVVGTV---L 105
DVVIV RT + ++K G ++T A+D+ A ++ V+E+ ++++P EV D++ G V L
Sbjct: 6 DVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKVLERNSKVDPGEVEDVIWGCVNQTL 65
Query: 106 APGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLE 165
G A RMA+ P T +TV+R C S + A+ A AI G D+ + G+E
Sbjct: 66 EQGWNIA---RMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVE 122
Query: 166 SMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXX 225
M +S++ V+P + A MG+T+E + + G++R++QD
Sbjct: 123 HM--GHVSMMHGVDPNPHMSLYAAKASGMMGLTAEMLGKMHGISREQQDAFAVRSHQLAH 180
Query: 226 XXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFK-KDGT 284
GKFKDEIIP+ + G K D+ IRP+TT+ LA LKPAF K GT
Sbjct: 181 KATVEGKFKDEIIPMQGY---DENGFLK--IFDYDETIRPDTTLESLAALKPAFNPKGGT 235
Query: 285 TTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAV 344
TAG +SQ++DGA +++M A GL L V RS + GVDP++MG GP A A+
Sbjct: 236 VTAGTSSQITDGASCMIVMSAQRAKDLGLEPLAVIRSMAVAGVDPAIMGYGPVPATQKAL 295
Query: 345 KSAGLQIDDINLFEINEVL 363
K AGL + DI+ E+NE
Sbjct: 296 KRAGLNMADIDFIELNEAF 314
>pdb|2WL5|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A.
pdb|2WL5|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A
Length = 392
Score = 182 bits (463), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 121/323 (37%), Positives = 176/323 (54%), Gaps = 18/323 (5%)
Query: 51 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGST 110
+VI +A RTA+ + G F +T A +L A V+ AV+E+ + EV ++++G VL G
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEG 63
Query: 111 RAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVN 170
+ R AA AG P+ +N+ C SGL+AVA I G I +A G+ESM++
Sbjct: 64 QN-PARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 171 SISVVGQVNPKVEIF----TQARDCL------LPMGITSENVAQRFGVTRQEQDLXXXXX 220
+ K+ F T +D L MG T+ENVA+++ ++R EQD
Sbjct: 123 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 182
Query: 221 XXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFK 280
G+FKDEI+P K G + +T+ D+ IR T+ +AKL+PAF
Sbjct: 183 QNKAEAAQKDGRFKDEIVPFIVK------GRKGDITVDADEYIRHGATLDSMAKLRPAFD 236
Query: 281 KDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAI 340
K+GT TAGNAS ++DGA A LLM + A ++G+ LG S++ VGVDP VMG GP A
Sbjct: 237 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 296
Query: 341 PAAVKSAGLQIDDINLFEINEVL 363
A++ AG +I D++L E NE
Sbjct: 297 RKALERAGWKIGDLDLVEANEAF 319
>pdb|2VU2|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate
Length = 392
Score = 182 bits (463), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 121/323 (37%), Positives = 176/323 (54%), Gaps = 18/323 (5%)
Query: 51 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGST 110
+VI +A RTA+ + G F +T A +L A V+ AV+E+ + EV ++++G VL G
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEG 63
Query: 111 RAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVN 170
+ R AA AG P+ +N+ C SGL+AVA I G I +A G+ESM++
Sbjct: 64 QN-PARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 171 SISVVGQVNPKVEIF----TQARDCL------LPMGITSENVAQRFGVTRQEQDLXXXXX 220
+ K+ F T +D L MG T+ENVA+++ ++R EQD
Sbjct: 123 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 182
Query: 221 XXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFK 280
G+FKDEI+P K G + +T+ D+ IR T+ +AKL+PAF
Sbjct: 183 QNKAEAAQKDGRFKDEIVPFIVK------GRKGDITVDADEYIRHGATLDSMAKLRPAFD 236
Query: 281 KDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAI 340
K+GT TAGNAS ++DGA A LLM + A ++G+ LG S++ VGVDP VMG GP A
Sbjct: 237 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 296
Query: 341 PAAVKSAGLQIDDINLFEINEVL 363
A++ AG +I D++L E NE
Sbjct: 297 RKALERAGWKIGDLDLVEANEAF 319
>pdb|2WL4|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 182 bits (463), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 121/323 (37%), Positives = 175/323 (54%), Gaps = 18/323 (5%)
Query: 51 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGST 110
+VI +A RTA+ + G F +T A +L A V+ AV+E+ + EV ++++G VL P
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 62
Query: 111 RAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVN 170
R AA AG P+ +N+ C SGL+AVA I G I +A G+ESM++
Sbjct: 63 GQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 171 SISVVGQVNPKVEIF----TQARDCL------LPMGITSENVAQRFGVTRQEQDLXXXXX 220
+ K+ F T +D L MG T+ENVA+++ ++R EQD
Sbjct: 123 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 182
Query: 221 XXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFK 280
G+FKDEI+P K G + +T+ D+ IR T+ +AKL+PAF
Sbjct: 183 QNKAEAAQKDGRFKDEIVPFIVK------GRKGDITVDADEYIRHGATLDSMAKLRPAFD 236
Query: 281 KDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAI 340
K+GT TAGNAS ++DGA A LLM + A ++G+ LG S++ VGVDP VMG GP A
Sbjct: 237 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 296
Query: 341 PAAVKSAGLQIDDINLFEINEVL 363
A++ AG +I D++L E NE
Sbjct: 297 RKALERAGWKIGDLDLVEANEAF 319
>pdb|2WL4|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 182 bits (462), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 121/323 (37%), Positives = 175/323 (54%), Gaps = 18/323 (5%)
Query: 51 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGST 110
+VI +A RTA+ + G F +T A +L A V+ AV+E+ + EV ++++G VL P
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 62
Query: 111 RAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVN 170
R AA AG P+ +N+ C SGL+AVA I G I +A G+ESM++
Sbjct: 63 GQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 171 SISVVGQVNPKVEIF----TQARDCL------LPMGITSENVAQRFGVTRQEQDLXXXXX 220
+ K+ F T +D L MG T+ENVA+++ ++R EQD
Sbjct: 123 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 182
Query: 221 XXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFK 280
G+FKDEI+P K G + +T+ D+ IR T+ +AKL+PAF
Sbjct: 183 QNKAEAAQKDGRFKDEIVPFIVK------GRKGDITVDADEYIRHGATLDSMAKLRPAFD 236
Query: 281 KDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAI 340
K+GT TAGNAS ++DGA A LLM + A ++G+ LG S++ VGVDP VMG GP A
Sbjct: 237 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 296
Query: 341 PAAVKSAGLQIDDINLFEINEVL 363
A++ AG +I D++L E NE
Sbjct: 297 RKALERAGWKIGDLDLVEANEAF 319
>pdb|2WKU|A Chain A, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|B Chain B, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|C Chain C, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|D Chain D, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant
Length = 392
Score = 181 bits (459), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 120/323 (37%), Positives = 176/323 (54%), Gaps = 18/323 (5%)
Query: 51 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGST 110
+VI +A RTA+ + G F +T A +L A V+ AV+E+ + EV ++++G VL G
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEG 63
Query: 111 RAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVN 170
+ R AA AG P+ +N+ C SGL+AVA I G I +A G+ESM++
Sbjct: 64 QN-PARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 171 SISVVGQVNPKVEIF----TQARDCL------LPMGITSENVAQRFGVTRQEQDLXXXXX 220
+ K+ F T +D L MG T+ENVA+++ ++R EQD
Sbjct: 123 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 182
Query: 221 XXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFK 280
G+FKDEI+P K G + +T+ D+ IR T+ +AKL+PAF
Sbjct: 183 QNKAEAAQKDGRFKDEIVPFIVK------GRKGDITVDADEYIRHGATLDSMAKLRPAFD 236
Query: 281 KDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAI 340
K+GT TAGNAS ++DGA A LLM + A ++G+ LG S++ VGVDP VMG GP A
Sbjct: 237 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 296
Query: 341 PAAVKSAGLQIDDINLFEINEVL 363
A++ AG +I D++L E +E
Sbjct: 297 RKALERAGWKIGDLDLVEAHEAF 319
>pdb|2WL6|A Chain A, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|B Chain B, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|C Chain C, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|D Chain D, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant
Length = 392
Score = 181 bits (458), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 120/323 (37%), Positives = 176/323 (54%), Gaps = 18/323 (5%)
Query: 51 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGST 110
+VI +A RTA+ + G F +T A +L A V+ AV+E+ + EV ++++G VL G
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEG 63
Query: 111 RAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVN 170
+ R AA AG P+ +N+ C SGL+AVA I G I +A G+ESM++
Sbjct: 64 QN-PARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 171 SISVVGQVNPKVEIF----TQARDCL------LPMGITSENVAQRFGVTRQEQDLXXXXX 220
+ K+ F T +D L MG T+ENVA+++ ++R EQD
Sbjct: 123 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 182
Query: 221 XXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFK 280
G+FKDEI+P K G + +T+ D+ IR T+ +AKL+PAF
Sbjct: 183 QNKAEAAQKDGRFKDEIVPFIVK------GRKGDITVDADEYIRHGATLDSMAKLRPAFD 236
Query: 281 KDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAI 340
K+GT TAGNAS ++DGA A LLM + A ++G+ LG S++ VGVDP VMG GP A
Sbjct: 237 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 296
Query: 341 PAAVKSAGLQIDDINLFEINEVL 363
A++ AG +I D++L E +E
Sbjct: 297 RKALERAGWKIGDLDLVEAHEAF 319
>pdb|2WKV|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A
Length = 392
Score = 181 bits (458), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 120/323 (37%), Positives = 176/323 (54%), Gaps = 18/323 (5%)
Query: 51 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGST 110
+VI +A RTA+ + G F +T A +L A V+ AV+E+ + EV ++++G VL G
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEG 63
Query: 111 RAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVN 170
+ R AA AG P+ +N+ C SGL+AVA I G I +A G+ESM++
Sbjct: 64 QN-PARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 171 SISVVGQVNPKVEIF----TQARDCL------LPMGITSENVAQRFGVTRQEQDLXXXXX 220
+ K+ F T +D L MG T+ENVA+++ ++R EQD
Sbjct: 123 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 182
Query: 221 XXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFK 280
G+FKDEI+P K G + +T+ D+ IR T+ +AKL+PAF
Sbjct: 183 QNKAEAAQKDGRFKDEIVPFIVK------GRKGDITVDADEYIRHGATLDSMAKLRPAFD 236
Query: 281 KDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAI 340
K+GT TAGNAS ++DGA A LLM + A ++G+ LG S++ VGVDP VMG GP A
Sbjct: 237 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 296
Query: 341 PAAVKSAGLQIDDINLFEINEVL 363
A++ AG +I D++L E +E
Sbjct: 297 RKALERAGWKIGDLDLVEADEAF 319
>pdb|3SS6|A Chain A, Crystal Structure Of The Bacillus Anthracis Acetyl-Coa
Acetyltransferase
pdb|3SS6|B Chain B, Crystal Structure Of The Bacillus Anthracis Acetyl-Coa
Acetyltransferase
Length = 394
Score = 179 bits (453), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 113/325 (34%), Positives = 172/325 (52%), Gaps = 18/325 (5%)
Query: 49 DDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPG 108
+VVI AA R+ I G K+ +L PVL+ +++ + P EV ++++G +
Sbjct: 5 HNVVITAAVRSPIGTFG-GALKNVTPVELAVPVLQEAVKRGGVEPHEVDEVILGHCIQR- 62
Query: 109 STRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT 168
+ A R AA AGFP+TV T+ RQ SSG+QA+ A I+ G+ ++ +A G+E+M+
Sbjct: 63 TDEANTARTAALAAGFPDTVTGYTIQRQXSSGMQAIMSAAMQIQLGVSEVVVAGGVEAMS 122
Query: 169 VNSISV----VGQVNPKVEIFTQARDCL------LPMGITSENVAQRFGVTRQEQDLXXX 218
+ ++ GQ EI + L + MG T+EN+ +++ +TR+EQD
Sbjct: 123 SSPYALKQHRWGQRLQHGEIRDTVWEVLEDPIHHIMMGETAENLVEQYEITREEQDEVAL 182
Query: 219 XXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPA 278
G F D+I+P+ K K V S D+ R + T LA LKPA
Sbjct: 183 RSHTLALKAIESGYFDDQIVPITIK------ERRKEVVFSKDEHPRADITAEKLAGLKPA 236
Query: 279 FKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAV 338
F+KDG+ TAGNAS ++DG+ ++LM A +KGL L +S GVDP +MGIGPA
Sbjct: 237 FRKDGSVTAGNASGLNDGSAVLVLMSEEKAKEKGLQPLARIVGYSVAGVDPKIMGIGPAP 296
Query: 339 AIPAAVKSAGLQIDDINLFEINEVL 363
AI ++ ++D +L EINE
Sbjct: 297 AIRKGLEKVDWSLEDADLLEINEAF 321
>pdb|1ULQ|A Chain A, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|B Chain B, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|C Chain C, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|D Chain D, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|E Chain E, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|F Chain F, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|G Chain G, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|H Chain H, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
Length = 401
Score = 178 bits (452), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 120/334 (35%), Positives = 168/334 (50%), Gaps = 31/334 (9%)
Query: 50 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGS 109
+ IV A RT I K G DDLLA L +++++ + EV D+ G G
Sbjct: 3 EAWIVEAVRTPIGKHG-GALASVRPDDLLAHALSVLVDRSGVPKEEVEDVYAGCANQAGE 61
Query: 110 TRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTV 169
RMA AGFP V TVNR C SGL+AVA A AI AG + I +G+ESM+
Sbjct: 62 DNRNVARMALLLAGFPVEVAGCTVNRLCGSGLEAVAQAARAIWAGEGKVYIGSGVESMSR 121
Query: 170 NSISV------------------VGQ--VNPKVEIFTQARDCLLPMGITSENVAQRFGVT 209
+V +G VNPK++ MG T+EN+A+ +G+
Sbjct: 122 APYAVPKPERGFPTGNLVMYDTTLGWRFVNPKMQALYGTES----MGETAENLAEMYGIR 177
Query: 210 RQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTI 269
R+EQD G+F+DE++PV K G E+ + + D+G R +T++
Sbjct: 178 REEQDRFALLSHQKAVRAWEEGRFQDEVVPVPVK-----RGKEE-ILVEQDEGPRRDTSL 231
Query: 270 ADLAKLKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDP 329
LA L+P F++ GT TAGN+S ++DGA AVLL+ A GL L R+ + GV P
Sbjct: 232 EKLAALRPVFREGGTVTAGNSSPLNDGAAAVLLVSDDYAKAHGLRPLARVRAIAVAGVPP 291
Query: 330 SVMGIGPAVAIPAAVKSAGLQIDDINLFEINEVL 363
+MGIGP A A++ AGL D+ L E+NE
Sbjct: 292 RIMGIGPVPATRKALERAGLSFSDLGLIELNEAF 325
>pdb|1M1O|A Chain A, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M1O|B Chain B, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M1O|C Chain C, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M1O|D Chain D, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M3K|A Chain A, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3K|B Chain B, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3K|C Chain C, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3K|D Chain D, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3Z|A Chain A, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|1M3Z|B Chain B, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|1M3Z|C Chain C, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|1M3Z|D Chain D, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|2VTZ|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A.
pdb|2VTZ|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A.
pdb|2VTZ|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A.
pdb|2VTZ|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A
Length = 392
Score = 178 bits (452), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 120/323 (37%), Positives = 174/323 (53%), Gaps = 18/323 (5%)
Query: 51 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGST 110
+VI +A RTA+ + G F +T A +L A V+ AV+E+ + EV ++++G VL P
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 62
Query: 111 RAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVN 170
R AA AG P+ +N+ SGL+AVA I G I +A G+ESM++
Sbjct: 63 GQNPARQAAMKAGVPQEATAWGMNQLAGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 171 SISVVGQVNPKVEIF----TQARDCL------LPMGITSENVAQRFGVTRQEQDLXXXXX 220
+ K+ F T +D L MG T+ENVA+++ ++R EQD
Sbjct: 123 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 182
Query: 221 XXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFK 280
G+FKDEI+P K G + +T+ D+ IR T+ +AKL+PAF
Sbjct: 183 QNKAEAAQKDGRFKDEIVPFIVK------GRKGDITVDADEYIRHGATLDSMAKLRPAFD 236
Query: 281 KDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAI 340
K+GT TAGNAS ++DGA A LLM + A ++G+ LG S++ VGVDP VMG GP A
Sbjct: 237 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 296
Query: 341 PAAVKSAGLQIDDINLFEINEVL 363
A++ AG +I D++L E NE
Sbjct: 297 RKALERAGWKIGDLDLVEANEAF 319
>pdb|1QFL|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1QFL|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1QFL|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1QFL|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1DM3|A Chain A, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
pdb|1DM3|B Chain B, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
pdb|1DM3|C Chain C, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
pdb|1DM3|D Chain D, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
Length = 389
Score = 178 bits (452), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 120/323 (37%), Positives = 174/323 (53%), Gaps = 18/323 (5%)
Query: 51 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGST 110
+VI +A RTA+ + G F +T A +L A V+ AV+E+ + EV ++++G VL P
Sbjct: 2 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 59
Query: 111 RAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVN 170
R AA AG P+ +N+ SGL+AVA I G I +A G+ESM++
Sbjct: 60 GQNPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 119
Query: 171 SISVVGQVNPKVEIF----TQARDCL------LPMGITSENVAQRFGVTRQEQDLXXXXX 220
+ K+ F T +D L MG T+ENVA+++ ++R EQD
Sbjct: 120 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 179
Query: 221 XXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFK 280
G+FKDEI+P K G + +T+ D+ IR T+ +AKL+PAF
Sbjct: 180 QNKAEAAQKDGRFKDEIVPFIVK------GRKGDITVDADEYIRHGATLDSMAKLRPAFD 233
Query: 281 KDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAI 340
K+GT TAGNAS ++DGA A LLM + A ++G+ LG S++ VGVDP VMG GP A
Sbjct: 234 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 293
Query: 341 PAAVKSAGLQIDDINLFEINEVL 363
A++ AG +I D++L E NE
Sbjct: 294 RKALERAGWKIGDLDLVEANEAF 316
>pdb|1M4S|A Chain A, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4S|B Chain B, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4S|C Chain C, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4S|D Chain D, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4T|A Chain A, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1M4T|B Chain B, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1M4T|C Chain C, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1M4T|D Chain D, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1NL7|A Chain A, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1NL7|B Chain B, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1NL7|C Chain C, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1NL7|D Chain D, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1OU6|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|1OU6|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|1OU6|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|1OU6|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|2VU0|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU0|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU0|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU0|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU1|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate.
pdb|2VU1|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate.
pdb|2VU1|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate.
pdb|2VU1|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate
Length = 392
Score = 178 bits (451), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 120/323 (37%), Positives = 174/323 (53%), Gaps = 18/323 (5%)
Query: 51 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGST 110
+VI +A RTA+ + G F +T A +L A V+ AV+E+ + EV ++++G VL P
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 62
Query: 111 RAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVN 170
R AA AG P+ +N+ SGL+AVA I G I +A G+ESM++
Sbjct: 63 GQNPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 171 SISVVGQVNPKVEIF----TQARDCL------LPMGITSENVAQRFGVTRQEQDLXXXXX 220
+ K+ F T +D L MG T+ENVA+++ ++R EQD
Sbjct: 123 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 182
Query: 221 XXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFK 280
G+FKDEI+P K G + +T+ D+ IR T+ +AKL+PAF
Sbjct: 183 QNKAEAAQKDGRFKDEIVPFIVK------GRKGDITVDADEYIRHGATLDSMAKLRPAFD 236
Query: 281 KDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAI 340
K+GT TAGNAS ++DGA A LLM + A ++G+ LG S++ VGVDP VMG GP A
Sbjct: 237 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 296
Query: 341 PAAVKSAGLQIDDINLFEINEVL 363
A++ AG +I D++L E NE
Sbjct: 297 RKALERAGWKIGDLDLVEANEAF 319
>pdb|2WL4|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 178 bits (451), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 120/323 (37%), Positives = 174/323 (53%), Gaps = 18/323 (5%)
Query: 51 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGST 110
+VI +A RTA+ + G F +T A +L A V+ AV+E+ + EV ++++G VL P
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 62
Query: 111 RAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVN 170
R AA AG P+ +N+ SGL+AVA I G I +A G+ESM++
Sbjct: 63 GQNPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 171 SISVVGQVNPKVEIF----TQARDCL------LPMGITSENVAQRFGVTRQEQDLXXXXX 220
+ K+ F T +D L MG T+ENVA+++ ++R EQD
Sbjct: 123 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 182
Query: 221 XXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFK 280
G+FKDEI+P K G + +T+ D+ IR T+ +AKL+PAF
Sbjct: 183 QNKAEAAQKDGRFKDEIVPFIVK------GRKGDITVDADEYIRHGATLDSMAKLRPAFD 236
Query: 281 KDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAI 340
K+GT TAGNAS ++DGA A LLM + A ++G+ LG S++ VGVDP VMG GP A
Sbjct: 237 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 296
Query: 341 PAAVKSAGLQIDDINLFEINEVL 363
A++ AG +I D++L E NE
Sbjct: 297 RKALERAGWKIGDLDLVEANEAF 319
>pdb|2WL5|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A.
pdb|2WL5|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A
Length = 392
Score = 178 bits (451), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 120/323 (37%), Positives = 174/323 (53%), Gaps = 18/323 (5%)
Query: 51 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGST 110
+VI +A RTA+ + G F +T A +L A V+ AV+E+ + EV ++++G VL P
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 62
Query: 111 RAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVN 170
R AA AG P+ +N+ SGL+AVA I G I +A G+ESM++
Sbjct: 63 GQNPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 171 SISVVGQVNPKVEIF----TQARDCL------LPMGITSENVAQRFGVTRQEQDLXXXXX 220
+ K+ F T +D L MG T+ENVA+++ ++R EQD
Sbjct: 123 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 182
Query: 221 XXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFK 280
G+FKDEI+P K G + +T+ D+ IR T+ +AKL+PAF
Sbjct: 183 QNKAEAAQKDGRFKDEIVPFIVK------GRKGDITVDADEYIRHGATLDSMAKLRPAFD 236
Query: 281 KDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAI 340
K+GT TAGNAS ++DGA A LLM + A ++G+ LG S++ VGVDP VMG GP A
Sbjct: 237 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 296
Query: 341 PAAVKSAGLQIDDINLFEINEVL 363
A++ AG +I D++L E NE
Sbjct: 297 RKALERAGWKIGDLDLVEANEAF 319
>pdb|2WL4|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 178 bits (451), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 120/323 (37%), Positives = 174/323 (53%), Gaps = 18/323 (5%)
Query: 51 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGST 110
+VI +A RTA+ + G F +T A +L A V+ AV+E+ + EV ++++G VL P
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVL-PAGE 62
Query: 111 RAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVN 170
R AA AG P+ +N+ SGL+AVA I G I +A G+ESM++
Sbjct: 63 GQNPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 171 SISVVGQVNPKVEIF----TQARDCL------LPMGITSENVAQRFGVTRQEQDLXXXXX 220
+ K+ F T +D L MG T+ENVA+++ ++R EQD
Sbjct: 123 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 182
Query: 221 XXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFK 280
G+FKDEI+P K G + +T+ D+ IR T+ +AKL+PAF
Sbjct: 183 QNKAEAAQKDGRFKDEIVPFIVK------GRKGDITVDADEYIRHGATLDSMAKLRPAFD 236
Query: 281 KDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAI 340
K+GT TAGNAS ++DGA A LLM + A ++G+ LG S++ VGVDP VMG GP A
Sbjct: 237 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 296
Query: 341 PAAVKSAGLQIDDINLFEINEVL 363
A++ AG +I D++L E NE
Sbjct: 297 RKALERAGWKIGDLDLVEANEAF 319
>pdb|2WKT|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A
Length = 392
Score = 178 bits (451), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 119/318 (37%), Positives = 174/318 (54%), Gaps = 18/318 (5%)
Query: 51 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGST 110
+VI +A RTA+ + G F +T A +L A V+ AV+E+ + EV ++++G VL G
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEG 63
Query: 111 RAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVN 170
+ R AA AG P+ +N+ C SGL+AVA I G I +A G+ESM++
Sbjct: 64 QN-PARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 171 SISVVGQVNPKVEIF----TQARDCL------LPMGITSENVAQRFGVTRQEQDLXXXXX 220
+ K+ F T +D L MG T+ENVA+++ ++R EQD
Sbjct: 123 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 182
Query: 221 XXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFK 280
G+FKDEI+P K G + +T+ D+ IR T+ +AKL+PAF
Sbjct: 183 QNKAEAAQKDGRFKDEIVPFIVK------GRKGDITVDADEYIRHGATLDSMAKLRPAFD 236
Query: 281 KDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAI 340
K+GT TAGNAS ++DGA A LLM + A ++G+ LG S++ VGVDP VMG GP A
Sbjct: 237 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 296
Query: 341 PAAVKSAGLQIDDINLFE 358
A++ AG +I D++L E
Sbjct: 297 RKALERAGWKIGDLDLVE 314
>pdb|2WKT|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A.
pdb|2WKT|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A.
pdb|2WKT|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A
Length = 392
Score = 174 bits (440), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 118/318 (37%), Positives = 173/318 (54%), Gaps = 18/318 (5%)
Query: 51 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGST 110
+VI +A RTA+ + G F +T A +L A V+ AV+E+ + EV ++++G VL G
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEG 63
Query: 111 RAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVN 170
+ R AA AG P+ +N+ SGL+AVA I G I +A G+ESM++
Sbjct: 64 QN-PARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 171 SISVVGQVNPKVEIF----TQARDCL------LPMGITSENVAQRFGVTRQEQDLXXXXX 220
+ K+ F T +D L MG T+ENVA+++ ++R EQD
Sbjct: 123 PHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVAS 182
Query: 221 XXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFK 280
G+FKDEI+P K G + +T+ D+ IR T+ +AKL+PAF
Sbjct: 183 QNKAEAAQKDGRFKDEIVPFIVK------GRKGDITVDADEYIRHGATLDSMAKLRPAFD 236
Query: 281 KDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAI 340
K+GT TAGNAS ++DGA A LLM + A ++G+ LG S++ VGVDP VMG GP A
Sbjct: 237 KEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPAS 296
Query: 341 PAAVKSAGLQIDDINLFE 358
A++ AG +I D++L E
Sbjct: 297 RKALERAGWKIGDLDLVE 314
>pdb|4DD5|A Chain A, Biosynthetic Thiolase (Thla1) From Clostridium Difficile
Length = 396
Score = 170 bits (431), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 114/325 (35%), Positives = 172/325 (52%), Gaps = 19/325 (5%)
Query: 50 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGS 109
+VVI +A RTA+ G FK A +L K I++ + P + + ++G VL G
Sbjct: 8 EVVIASAARTAVGSFG-GAFKSVSAVELGVTAAKEAIKRANITPDMIDESLLGGVLTAGL 66
Query: 110 TRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTV 169
+ + R A AG P P T+N C SGL++V+ + I G DI + G E+M++
Sbjct: 67 GQNI-ARQIALGAGIPVEKPAMTINIVCGSGLRSVSMASQLIALGDADIMLVGGAENMSM 125
Query: 170 N-----SISVVGQVNPKVEIFTQARDCL------LPMGITSENVAQRFGVTRQEQDLXXX 218
+ S ++ + + +D L MGIT+EN+A+++ +TR+EQD
Sbjct: 126 SPYLVPSARYGARMGDAAFVDSMIKDGLSDIFNNYHMGITAENIAEQWNITREEQDELAL 185
Query: 219 XXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPA 278
GKF +EI+PV K T V+K D+ I+P TT+ LAKL+PA
Sbjct: 186 ASQNKAEKAQAEGKFDEEIVPVVIKGRKGDTVVDK------DEYIKPGTTMEKLAKLRPA 239
Query: 279 FKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAV 338
FKKDGT TAGNAS ++DGA +++M + A + G+ L S+ GVDP +MG GP
Sbjct: 240 FKKDGTVTAGNASGINDGAAMLVVMAKEKAEELGIEPLATIVSYGTAGVDPKIMGYGPVP 299
Query: 339 AIPAAVKSAGLQIDDINLFEINEVL 363
A A+++A + I+DI+L E NE
Sbjct: 300 ATKKALEAANMTIEDIDLVEANEAF 324
>pdb|1WL4|A Chain A, Human Cytosolic Acetoacetyl-Coa Thiolase Complexed With
Coa
pdb|1WL5|A Chain A, Human Cytosolic Acetoacetyl-Coa Thiolase
Length = 397
Score = 168 bits (425), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 122/342 (35%), Positives = 181/342 (52%), Gaps = 32/342 (9%)
Query: 46 AFDDDVVIVAAYRTAICKAKRGGFKDTLA----DDLLAPVLKAVIEKTRLNPSEVGDIVV 101
A D VVIV+A RT I G F LA DL + V+K V+++ + P +V +++
Sbjct: 3 AGSDPVVIVSAARTII-----GSFNGALAAVPVQDLGSTVIKEVLKRATVAPEDVSEVIF 57
Query: 102 GTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIA 161
G VLA G + R A+ AG P +VP + SGL+AV +I G I +A
Sbjct: 58 GHVLAAGCGQN-PVRQASVGAGIPYSVPAWSCQMIXGSGLKAVCLAVQSIGIGDSSIVVA 116
Query: 162 AGLESMT-------VNSISVVGQVNPKVEIFTQA-----RDCLLPMGITSENVAQRFGVT 209
G+E+M+ + + +G++ I +C MGIT+ENVA+++ V+
Sbjct: 117 GGMENMSKAPHLAYLRTGVKIGEMPLTDSILCDGLTDAFHNC--HMGITAENVAKKWQVS 174
Query: 210 RQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTI 269
R++QD G F EI+PV +V + G+ + + D+ R + I
Sbjct: 175 REDQDKVAVLSQNRTENAQKAGHFDKEIVPV---LVSTRKGL---IEVKTDEFPRHGSNI 228
Query: 270 ADLAKLKPAFKKDGT--TTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGV 327
++KLKP F DGT T NAS ++DGA AV+LMK+S A ++GL L S+S VGV
Sbjct: 229 EAMSKLKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEADKRGLTPLARIVSWSQVGV 288
Query: 328 DPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEVLVPIIAA 369
+PS+MGIGP AI AV AG ++D+++FEINE + AA
Sbjct: 289 EPSIMGIGPIPAIKQAVTKAGWSLEDVDIFEINEAFAAVSAA 330
>pdb|3GOA|A Chain A, Crystal Structure Of The Salmonella Typhimurium Fada 3-
Ketoacyl-Coa Thiolase
pdb|3GOA|B Chain B, Crystal Structure Of The Salmonella Typhimurium Fada 3-
Ketoacyl-Coa Thiolase
Length = 387
Score = 149 bits (377), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 110/321 (34%), Positives = 154/321 (47%), Gaps = 9/321 (2%)
Query: 49 DDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAP 107
+ VVIV A RT ++K G F++ A+DL A + ++++ + L + + DI G V
Sbjct: 2 EQVVIVDAIRTPXGRSKGGAFRNVRAEDLSAHLXRSLLARNPSLTAATLDDIYWGCVQQT 61
Query: 108 GSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESM 167
R AA A P +VP TVNR C S QA+ D A I G + + G+E
Sbjct: 62 LEQGFNIARNAALLAEIPHSVPAVTVNRLCGSSXQALHDAARXIXTGDAQVCLVGGVEHX 121
Query: 168 TVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXX 227
S +P + G+T+E +++ G++R+ QD
Sbjct: 122 GHVPXSHGVDFHPGLS--RNVAKAAGXXGLTAEXLSRLHGISREXQDQFAARSHARAWAA 179
Query: 228 XXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKK-DGTTT 286
G FK EIIP D GV K+ + D+ IRP TT+ L+ L+PAF GT T
Sbjct: 180 TQSGAFKTEIIPTGGHDAD---GVLKQ--FNYDEVIRPETTVEALSTLRPAFDPVSGTVT 234
Query: 287 AGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKS 346
AG +S +SDGA A L+ S A + GL RS + VG DPS+ G GP A A+K
Sbjct: 235 AGTSSALSDGAAAXLVXSESRARELGLKPRARIRSXAVVGCDPSIXGYGPVPASKLALKK 294
Query: 347 AGLQIDDINLFEINEVLVPII 367
AGL DI++FE NE I
Sbjct: 295 AGLSASDIDVFEXNEAFAAQI 315
>pdb|2IB7|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
Length = 395
Score = 125 bits (315), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 107/345 (31%), Positives = 167/345 (48%), Gaps = 33/345 (9%)
Query: 44 KPAFDDDVVIVAAYRTAICKAKRGGFKDTL----ADDLLAPVLKAVIEKTRLNPSEVGDI 99
KP + VVIV+A RT I G F +L A L + ++ IEK + EV +
Sbjct: 4 KPTLKE-VVIVSATRTPI-----GSFLGSLSLLPATKLGSIAIQGAIEKAGIPKEEVKEA 57
Query: 100 VVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIG 159
+G VL G +A R A AG P + P T+N+ C+SG++A+ + ++ G D+
Sbjct: 58 YMGNVLQGGEGQA-PTRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQSLMCGHQDVM 116
Query: 160 IAAGLESMT-----VNSISV-VGQVNPKVEIFTQARDCL------LPMGITSENVAQRFG 207
+A G+ESM+ +N S G V K+E +D L + MG +EN A++
Sbjct: 117 VAGGMESMSNVPYVMNRGSTPYGGV--KLEDLI-VKDGLTDVYNKIHMGSCAENTAKKLN 173
Query: 208 VTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNT 267
+ R EQD GKF +E+IPV + + V + D+ +
Sbjct: 174 IARNEQDAYAINSYTRSKAAWEAGKFGNEVIPVTVTVKG-----QPDVVVKEDEEYK-RV 227
Query: 268 TIADLAKLKPAFKKD-GTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVG 326
+ + KLK F+K+ GT TA NAS ++DGA A++LM A + + L +F+
Sbjct: 228 DFSKVPKLKTVFQKENGTVTAANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAA 287
Query: 327 VDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEVLVPIIAANI 371
V+P I P A +K GL+ +DI ++E+NE ++ ANI
Sbjct: 288 VEPIDFPIAPVYAASMVLKDVGLKKEDIAMWEVNEAFSLVVLANI 332
>pdb|2IBU|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
Length = 395
Score = 121 bits (303), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 106/345 (30%), Positives = 166/345 (48%), Gaps = 33/345 (9%)
Query: 44 KPAFDDDVVIVAAYRTAICKAKRGGFKDTL----ADDLLAPVLKAVIEKTRLNPSEVGDI 99
KP + VVIV+A RT I G F +L A L + ++ IEK + EV +
Sbjct: 4 KPTLKE-VVIVSATRTPI-----GSFLGSLSLLPATKLGSIAIQGAIEKAGIPKEEVKEA 57
Query: 100 VVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIG 159
+G VL G +A R A AG P + P T+N+ +SG++A+ + ++ G D+
Sbjct: 58 YMGNVLQGGEGQA-PTRQAVLGAGLPISTPCTTINKVXASGMKAIMMASQSLMCGHQDVM 116
Query: 160 IAAGLESMT-----VNSISV-VGQVNPKVEIFTQARDCL------LPMGITSENVAQRFG 207
+A G+ESM+ +N S G V K+E +D L + MG +EN A++
Sbjct: 117 VAGGMESMSNVPYVMNRGSTPYGGV--KLEDLI-VKDGLTDVYNKIHMGSCAENTAKKLN 173
Query: 208 VTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNT 267
+ R EQD GKF +E+IPV + + V + D+ +
Sbjct: 174 IARNEQDAYAINSYTRSKAAWEAGKFGNEVIPVTVTVKG-----QPDVVVKEDEEYK-RV 227
Query: 268 TIADLAKLKPAFKKD-GTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVG 326
+ + KLK F+K+ GT TA NAS ++DGA A++LM A + + L +F+
Sbjct: 228 DFSKVPKLKTVFQKENGTVTAANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAA 287
Query: 327 VDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEVLVPIIAANI 371
V+P I P A +K GL+ +DI ++E+NE ++ ANI
Sbjct: 288 VEPIDFPIAPVYAASMVLKDVGLKKEDIAMWEVNEAFSLVVLANI 332
>pdb|2F2S|A Chain A, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|B Chain B, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|C Chain C, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|D Chain D, Human Mitochondrial Acetoacetyl-Coa Thiolase
Length = 406
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 104/339 (30%), Positives = 164/339 (48%), Gaps = 32/339 (9%)
Query: 50 DVVIVAAYRTAICKAKRGGFKDTL----ADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVL 105
+VVIV+A RT I G F +L A L + ++ IEK + EV + +G VL
Sbjct: 20 EVVIVSATRTPI-----GSFLGSLSLLPATKLGSIAIQGAIEKAGIPKEEVKEAYMGNVL 74
Query: 106 APGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLE 165
G +A R A AG P + P T+N+ +SG++A+ + ++ G D+ +A G+E
Sbjct: 75 QGGEGQA-PTRQAVLGAGLPISTPCTTINKVXASGMKAIMMASQSLMCGHQDVMVAGGME 133
Query: 166 SMT-----VNSISV-VGQVNPKVEIFTQARDCL------LPMGITSENVAQRFGVTRQEQ 213
SM+ +N S G V K+E +D L + MG +EN A++ + R EQ
Sbjct: 134 SMSNVPYVMNRGSTPYGGV--KLEDLI-VKDGLTDVYNKIHMGSCAENTAKKLNIARNEQ 190
Query: 214 DLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLA 273
D GKF +E+IPV + + V + D+ + + +
Sbjct: 191 DAYAINSYTRSKAAWEAGKFGNEVIPVTVTVKG-----QPDVVVKEDEEYK-RVDFSKVP 244
Query: 274 KLKPAFKKD-GTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVM 332
KLK F+K+ GT TA NAS ++DGA A++LM A + + L +F+ V+P
Sbjct: 245 KLKTVFQKENGTVTAANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAAVEPIDF 304
Query: 333 GIGPAVAIPAAVKSAGLQIDDINLFEINEVLVPIIAANI 371
I P A +K GL+ +DI ++E+NE ++ ANI
Sbjct: 305 PIAPVYAASMVLKDVGLKKEDIAMWEVNEAFSLVVLANI 343
>pdb|3SVK|A Chain A, Crystal Structure Of Acetyl-Coa Acetyltransferase From
Mycobacterium Avium
pdb|3SVK|B Chain B, Crystal Structure Of Acetyl-Coa Acetyltransferase From
Mycobacterium Avium
Length = 407
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 95/347 (27%), Positives = 152/347 (43%), Gaps = 37/347 (10%)
Query: 46 AFDDDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTV 104
+ ++ I A RT K K G + +L+ ++ + + L+ + + D+++G V
Sbjct: 4 SMSEEAFIYEAIRTPRGKQKNGSLTEVKPLNLVVGLVDELRRRYPDLDETLISDMILGVV 63
Query: 105 LAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGL 164
G R A AG PET +NR C+SGL+AV A +++G D+ +A G+
Sbjct: 64 SPVGDQGGDIARTAVLAAGLPETTGGVQLNRFCASGLEAVNTAAQKVRSGWDDLVLAGGV 123
Query: 165 ESMT---VNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXX 221
ESM+ + S +P+ T R +P GI ++ +A G +R++ D
Sbjct: 124 ESMSRVPMGSDGGAWATDPE----TNYRIGFVPQGIGADLIATLEGFSREDVDAYALRSQ 179
Query: 222 XXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAF-- 279
G F ++PV + V + D+ +RP+TT+ LAKLK AF
Sbjct: 180 QKAAAAWSGGYFAKSVVPVRDQ--------NGLVILDHDEHMRPDTTMEGLAKLKTAFDG 231
Query: 280 -------------------KKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFR 320
K + T GN+S + DGA VL+ +GL
Sbjct: 232 VGEMGGFDDVALQKYHWVEKINHVHTGGNSSGIVDGAALVLVGSEKAGKSQGLTPRARIV 291
Query: 321 SFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEVLVPII 367
+ + G DP +M GP A + AGL IDDI+LFE+NE ++
Sbjct: 292 ATATSGSDPVIMLTGPTPATRKVLDRAGLTIDDIDLFELNEAFASVV 338
>pdb|2HG4|A Chain A, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|B Chain B, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|C Chain C, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|D Chain D, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|E Chain E, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|F Chain F, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs
Length = 917
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 13/104 (12%)
Query: 263 IRPNTTIADLAKLKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSF 322
R +A + KP F K A + +++GAG ++L + S A ++G P+L V R
Sbjct: 238 FRSQGGLAADGRCKP-FSK-----AADGFGLAEGAGVLVLQRLSAARREGRPVLAVLRG- 290
Query: 323 SAVGVDPSVMGI----GPAVA--IPAAVKSAGLQIDDINLFEIN 360
SAV D + G+ GPA I A+++AG++ D++ E +
Sbjct: 291 SAVNQDGASNGLTAPSGPAQQRVIRRALENAGVRAGDVDYVEAH 334
>pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|B Chain B, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|C Chain C, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|D Chain D, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design
Length = 965
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 263 IRPNTTIA--DLAKLKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLA 308
++PNT++ L L P TAGN S+G AVLL K+SLA
Sbjct: 194 LKPNTSVQFLRLGMLSPEGTCKAFDTAGNGYCRSEGVVAVLLTKKSLA 241
>pdb|2UV8|A Chain A, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|B Chain B, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|C Chain C, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 1887
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 285 TTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGV 318
TT N + GAG ++M+ LA++ G+PI G+
Sbjct: 1370 TTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGI 1403
>pdb|2VKZ|A Chain A, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|B Chain B, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|C Chain C, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|A Chain A, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|B Chain B, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|C Chain C, Saccharomyces Cerevisiae Fas Type I
Length = 1887
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 285 TTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGV 318
TT N + GAG ++M+ LA++ G+PI G+
Sbjct: 1370 TTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGI 1403
>pdb|2PFF|A Chain A, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|D Chain D, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|G Chain G, Structural Insights Of Yeast Fatty Acid Synthase
Length = 1688
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 285 TTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGV 318
TT N + GAG ++M+ LA++ G+PI G+
Sbjct: 1171 TTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGI 1204
>pdb|2UV9|A Chain A, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|B Chain B, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|C Chain C, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|D Chain D, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|E Chain E, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|F Chain F, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVB|A Chain A, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|B Chain B, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|C Chain C, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|D Chain D, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|E Chain E, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|F Chain F, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
Length = 1878
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 284 TTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGV 318
T+T N S G G ++M LA++ G+PI G+
Sbjct: 1344 TSTTRNGFMESQGCGVQVIMTAQLALEMGVPIYGI 1378
>pdb|2D0O|A Chain A, Strcuture Of Diol Dehydratase-Reactivating Factor
Complexed With Adp And Mg2+
pdb|2D0O|C Chain C, Strcuture Of Diol Dehydratase-Reactivating Factor
Complexed With Adp And Mg2+
pdb|2D0P|A Chain A, Strcuture Of Diol Dehydratase-Reactivating Factor In
Nucleotide Free Form
pdb|2D0P|C Chain C, Strcuture Of Diol Dehydratase-Reactivating Factor In
Nucleotide Free Form
Length = 610
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 14/73 (19%)
Query: 295 DGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDI 354
D AGA+ + +LA G I G R+ V GI A+A+ A + AG+ + DI
Sbjct: 22 DEAGALTITHSALAETTG--IKGTLRN---------VFGIQEALALVA--RGAGIAVSDI 68
Query: 355 NLFEINEVLVPII 367
+L INE P+I
Sbjct: 69 SLIRINEA-TPVI 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,345,276
Number of Sequences: 62578
Number of extensions: 357335
Number of successful extensions: 1114
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 928
Number of HSP's gapped (non-prelim): 80
length of query: 374
length of database: 14,973,337
effective HSP length: 100
effective length of query: 274
effective length of database: 8,715,537
effective search space: 2388057138
effective search space used: 2388057138
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)