BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017290
(374 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site.
pdb|2C59|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site
Length = 379
Score = 719 bits (1855), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/377 (90%), Positives = 363/377 (96%), Gaps = 3/377 (0%)
Query: 1 MGSTEGT-YGAYTYEELEREPYWPSEKLRISVTGAGGFIASHIARRLKSEGHYIIASDWK 59
MG+T GT YGAYTY+ELERE YWPSE L+IS+TGAGGFIASHIARRLK EGHY+IASDWK
Sbjct: 3 MGTTNGTDYGAYTYKELEREQYWPSENLKISITGAGGFIASHIARRLKHEGHYVIASDWK 62
Query: 60 KNEHMTEDMFCHEFHLVDLRVMDNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNT 119
KNEHMTEDMFC EFHLVDLRVM+NCLKVT+GVDHVFNLAADMGGMGFIQSNHSVIMYNNT
Sbjct: 63 KNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNT 122
Query: 120 MISFNMLEASRISGVKRFFYASSACIYPEFKQLET-NVSLKESDAWPAEPQDAYGLEKLA 178
MISFNM+EA+RI+G+KRFFYASSACIYPEFKQLET NVSLKESDAWPAEPQDAYGLEKLA
Sbjct: 123 MISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKLA 182
Query: 179 SEELCKHYTKDFGIECRVGRFHNIYGPFGTWKG-MEKAPAAFCRKALTSTDKFEMWGDGL 237
+EELCKHY KDFGIECR+GRFHNIYGPFGTWKG EKAPAAFCRKA TSTD+FEMWGDGL
Sbjct: 183 TEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGL 242
Query: 238 QTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFEDKKLPIHHIPGP 297
QTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAE+VLSFE+KKLPIHHIPGP
Sbjct: 243 QTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGP 302
Query: 298 EGVRGRNSDNTLIKEKLGWAPSMKLKDGLRITYFWIKEQIEKEKTQGIDLSVYGSSKVVG 357
EGVRGRNSDN LIKEKLGWAP+M+LK+GLRITYFWIKEQIEKEK +G D+S+YGSSKVVG
Sbjct: 303 EGVRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFWIKEQIEKEKAKGSDVSLYGSSKVVG 362
Query: 358 TQAPVQLGSLRAADGKE 374
TQAPVQLGSLRAADGKE
Sbjct: 363 TQAPVQLGSLRAADGKE 379
>pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site.
pdb|2C54|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site
Length = 379
Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/377 (90%), Positives = 363/377 (96%), Gaps = 3/377 (0%)
Query: 1 MGSTEGT-YGAYTYEELEREPYWPSEKLRISVTGAGGFIASHIARRLKSEGHYIIASDWK 59
MG+T GT YGAYTY+ELERE YWPSE L+IS+TGAGGFIASHIARRLK EGHY+IASDWK
Sbjct: 3 MGTTNGTDYGAYTYKELEREQYWPSENLKISITGAGGFIASHIARRLKHEGHYVIASDWK 62
Query: 60 KNEHMTEDMFCHEFHLVDLRVMDNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNT 119
KNEHMTEDMFC EFHLVDLRVM+NCLKVT+GVDHVFNLAADMGGMGFIQSNHSVIMYNNT
Sbjct: 63 KNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNT 122
Query: 120 MISFNMLEASRISGVKRFFYASSACIYPEFKQLET-NVSLKESDAWPAEPQDAYGLEKLA 178
MISFNM+EA+RI+G+KRFFYASSACIYPEFKQLET NVSLKESDAWPAEPQDAYGLE+LA
Sbjct: 123 MISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLERLA 182
Query: 179 SEELCKHYTKDFGIECRVGRFHNIYGPFGTWKG-MEKAPAAFCRKALTSTDKFEMWGDGL 237
+EELCKHY KDFGIECR+GRFHNIYGPFGTWKG EKAPAAFCRKA TSTD+FEMWGDGL
Sbjct: 183 TEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGL 242
Query: 238 QTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFEDKKLPIHHIPGP 297
QTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAE+VLSFE+KKLPIHHIPGP
Sbjct: 243 QTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGP 302
Query: 298 EGVRGRNSDNTLIKEKLGWAPSMKLKDGLRITYFWIKEQIEKEKTQGIDLSVYGSSKVVG 357
EGVRGRNSDN LIKEKLGWAP+M+LK+GLRITYFWIKEQIEKEK +G D+S+YGSSKVVG
Sbjct: 303 EGVRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFWIKEQIEKEKAKGSDVSLYGSSKVVG 362
Query: 358 TQAPVQLGSLRAADGKE 374
TQAPVQLGSLRAADGKE
Sbjct: 363 TQAPVQLGSLRAADGKE 379
>pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
pdb|2C5A|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
Length = 379
Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/377 (90%), Positives = 363/377 (96%), Gaps = 3/377 (0%)
Query: 1 MGSTEGT-YGAYTYEELEREPYWPSEKLRISVTGAGGFIASHIARRLKSEGHYIIASDWK 59
MG+T GT YGAYTY+ELERE YWPSE L+IS+TGAGGFIASHIARRLK EGHY+IASDWK
Sbjct: 3 MGTTNGTDYGAYTYKELEREQYWPSENLKISITGAGGFIASHIARRLKHEGHYVIASDWK 62
Query: 60 KNEHMTEDMFCHEFHLVDLRVMDNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNT 119
KNEHMTEDMFC EFHLVDLRVM+NCLKVT+GVDHVFNLAADMGGMGFIQSNHSVIMYNNT
Sbjct: 63 KNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNT 122
Query: 120 MISFNMLEASRISGVKRFFYASSACIYPEFKQLET-NVSLKESDAWPAEPQDAYGLEKLA 178
MISFNM+EA+RI+G+KRFFYASSACIYPEFKQLET NVSLKESDAWPAEPQDA+GLEKLA
Sbjct: 123 MISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLA 182
Query: 179 SEELCKHYTKDFGIECRVGRFHNIYGPFGTWKG-MEKAPAAFCRKALTSTDKFEMWGDGL 237
+EELCKHY KDFGIECR+GRFHNIYGPFGTWKG EKAPAAFCRKA TSTD+FEMWGDGL
Sbjct: 183 TEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGL 242
Query: 238 QTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFEDKKLPIHHIPGP 297
QTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAE+VLSFE+KKLPIHHIPGP
Sbjct: 243 QTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGP 302
Query: 298 EGVRGRNSDNTLIKEKLGWAPSMKLKDGLRITYFWIKEQIEKEKTQGIDLSVYGSSKVVG 357
EGVRGRNSDN LIKEKLGWAP+M+LK+GLRITYFWIKEQIEKEK +G D+S+YGSSKVVG
Sbjct: 303 EGVRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFWIKEQIEKEKAKGSDVSLYGSSKVVG 362
Query: 358 TQAPVQLGSLRAADGKE 374
TQAPVQLGSLRAADGKE
Sbjct: 363 TQAPVQLGSLRAADGKE 379
>pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site.
pdb|2C5E|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site
Length = 379
Score = 717 bits (1850), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/377 (90%), Positives = 362/377 (96%), Gaps = 3/377 (0%)
Query: 1 MGSTEGT-YGAYTYEELEREPYWPSEKLRISVTGAGGFIASHIARRLKSEGHYIIASDWK 59
MG+T GT YGAYTY+ELERE YWPSE L+IS+TGAGGFIASHIARRLK EGHY+IASDWK
Sbjct: 3 MGTTNGTDYGAYTYKELEREQYWPSENLKISITGAGGFIASHIARRLKHEGHYVIASDWK 62
Query: 60 KNEHMTEDMFCHEFHLVDLRVMDNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNT 119
KNEHMTEDMFC EFHLVDLRVM+NCLKVT+GVDHVFNLAADMGGMGFIQSNHSVIMYNNT
Sbjct: 63 KNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNT 122
Query: 120 MISFNMLEASRISGVKRFFYASSACIYPEFKQLET-NVSLKESDAWPAEPQDAYGLEKLA 178
MISFNM+EA+RI+G+KRFFYASSACIYPEFKQLET NVSLKESDAWPAEPQDAYGLEKLA
Sbjct: 123 MISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKLA 182
Query: 179 SEELCKHYTKDFGIECRVGRFHNIYGPFGTWKG-MEKAPAAFCRKALTSTDKFEMWGDGL 237
+EELCKHY KDFGIECR+GRFHNIYGPFGTWKG E APAAFCRKA TSTD+FEMWGDGL
Sbjct: 183 TEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREAAPAAFCRKAQTSTDRFEMWGDGL 242
Query: 238 QTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFEDKKLPIHHIPGP 297
QTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAE+VLSFE+KKLPIHHIPGP
Sbjct: 243 QTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGP 302
Query: 298 EGVRGRNSDNTLIKEKLGWAPSMKLKDGLRITYFWIKEQIEKEKTQGIDLSVYGSSKVVG 357
EGVRGRNSDN LIKEKLGWAP+M+LK+GLRITYFWIKEQIEKEK +G D+S+YGSSKVVG
Sbjct: 303 EGVRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFWIKEQIEKEKAKGSDVSLYGSSKVVG 362
Query: 358 TQAPVQLGSLRAADGKE 374
TQAPVQLGSLRAADGKE
Sbjct: 363 TQAPVQLGSLRAADGKE 379
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 111 bits (277), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 86/324 (26%), Positives = 153/324 (47%), Gaps = 24/324 (7%)
Query: 25 EKLRISVTGAGGFIASHIARRLKSEGHYIIASD--WKKNEHMTEDMFCHE-FHLVDLRVM 81
++ RI +TG GF+ SH+ +L +GH + D + + E HE F L++ V+
Sbjct: 4 DRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVV 63
Query: 82 DNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYAS 141
+ + VD +++LA+ ++ N + NT+ + NML ++ G R AS
Sbjct: 64 E---PLYIEVDQIYHLASPASPPNYMY-NPIKTLKTNTIGTLNMLGLAKRVGA-RLLLAS 118
Query: 142 SACIY--PEFKQLETNVSLKESDAW----PAEPQDAYGLEKLASEELCKHYTKDFGIECR 195
++ +Y PE V + D W P P+ Y K +E +C Y K G+E R
Sbjct: 119 TSEVYGDPE-------VHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVR 171
Query: 196 VGRFHNIYGPFGTWKGMEKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECVEGVLRL 255
V R N +GP + + F +AL + ++G G QTR+F ++ + V G++ L
Sbjct: 172 VARIFNTFGPRMHMND-GRVVSNFILQALQG-EPLTVYGSGSQTRAFQYVSDLVNGLVAL 229
Query: 256 TKSDFREPVNIGSDEMVSMNEMAEIVLSFEDKKLPIHHIP-GPEGVRGRNSDNTLIKEKL 314
S+ PVN+G+ E ++ E A+++ + I + + + R D K L
Sbjct: 230 MNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLML 289
Query: 315 GWAPSMKLKDGLRITYFWIKEQIE 338
GW P + L++GL + ++++E
Sbjct: 290 GWEPVVPLEEGLNKAIHYFRKELE 313
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
Length = 313
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 93/319 (29%), Positives = 150/319 (47%), Gaps = 23/319 (7%)
Query: 29 ISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEF-HLV--DLRVMDNCL 85
I VTG GFI SH+ +L SE + I+ D N + F +E LV DL D+
Sbjct: 4 IVVTGGAGFIGSHVVDKL-SESNEIVVID---NLSSGNEEFVNEAARLVKADL-AADDIK 58
Query: 86 KVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACI 145
KG + V+++AA+ + N I NN + ++ +LEA R +GV R + S++ +
Sbjct: 59 DYLKGAEEVWHIAAN-PDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTSTSTV 117
Query: 146 YPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGP 205
Y E K + T + +P P YG KLA E L + Y F ++ + RF N+ G
Sbjct: 118 YGEAKVIPT------PEDYPTHPISLYGASKLACEALIESYCHTFDMQAWIYRFANVIGR 171
Query: 206 FGTWKGMEKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPV- 264
T F K + ++ E+ G+G Q +S+ +I +CV+ +L + D R +
Sbjct: 172 RST----HGVIYDFIMKLKRNPEELEILGNGEQNKSYIYISDCVDAMLFGLRGDERVNIF 227
Query: 265 NIGSDEMVSMNEMAEIVLSFEDKKLPIHHIPGPEGVRGRNSDNTLIKEK---LGWAPSMK 321
NIGS++ + + +AEIV G G +G L EK LGW P
Sbjct: 228 NIGSEDQIKVKRIAEIVCEELGLSPRFRFTGGDRGWKGDVPVMLLSIEKLKRLGWKPRYN 287
Query: 322 LKDGLRITYFWIKEQIEKE 340
++ +R+ + E +++E
Sbjct: 288 SEEAVRMAVRDLVEDLDEE 306
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 108 bits (271), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 85/324 (26%), Positives = 150/324 (46%), Gaps = 24/324 (7%)
Query: 25 EKLRISVTGAGGFIASHIARRLKSEGHYIIASD--WKKNEHMTEDMFCHE-FHLVDLRVM 81
++ RI +TG GF+ SH+ +L +GH + D + + E HE F L++ V+
Sbjct: 26 DRKRILITGGAGFVGSHLTDKLXXDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVV 85
Query: 82 DNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYAS 141
+ + VD +++LA+ + N + NT+ + N L ++ G R AS
Sbjct: 86 E---PLYIEVDQIYHLASPASPPNY-XYNPIKTLKTNTIGTLNXLGLAKRVGA-RLLLAS 140
Query: 142 SACIY--PEFKQLETNVSLKESDAW----PAEPQDAYGLEKLASEELCKHYTKDFGIECR 195
++ +Y PE V + D W P P+ Y K +E C Y K G+E R
Sbjct: 141 TSEVYGDPE-------VHPQSEDYWGHVNPIGPRACYDEGKRVAETXCYAYXKQEGVEVR 193
Query: 196 VGRFHNIYGPFGTWKGMEKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECVEGVLRL 255
V R N +GP + + F +AL + ++G G QTR+F ++ + V G++ L
Sbjct: 194 VARIFNTFGPR-XHXNDGRVVSNFILQALQG-EPLTVYGSGSQTRAFQYVSDLVNGLVAL 251
Query: 256 TKSDFREPVNIGSDEMVSMNEMAEIVLSFEDKKLPIHHIP-GPEGVRGRNSDNTLIKEKL 314
S+ PVN+G+ E ++ E A+++ + I + + + R D K L
Sbjct: 252 XNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLXL 311
Query: 315 GWAPSMKLKDGLRITYFWIKEQIE 338
GW P + L++GL + ++++E
Sbjct: 312 GWEPVVPLEEGLNKAIHYFRKELE 335
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 107 bits (268), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 87/317 (27%), Positives = 145/317 (45%), Gaps = 33/317 (10%)
Query: 27 LRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLK 86
+RI VTG GFI SH+ +L G+ ++ D + + E H+ DL+ D
Sbjct: 1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDIVQRDTGG----SAELHVRDLK--DYSWG 54
Query: 87 VTKGVDHVFNLAADMGGMGFIQSNHSVIMYN-NTMISFNMLEASRISGVKRFFYASSACI 145
D VF+ AA+ + + ++ +N N + +FN+LE +R +GV+ +ASS+ +
Sbjct: 55 AGIKGDVVFHFAANPEVR--LSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSSTV 112
Query: 146 YPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGP 205
Y + + T + P +P YG K A E +C Y + FG+ C R+ N+ GP
Sbjct: 113 YGDADVIPT------PEEEPYKPISVYGAAKAAGEVMCATYARLFGVRCLAVRYANVVGP 166
Query: 206 FGTWKGMEKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFRE--- 262
+ F K + + E+ GDG Q +S+ ++ + VE L K F E
Sbjct: 167 ----RLRHGVIYDFIMKLRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWKK-FEEMDA 221
Query: 263 ---PVNIGSDEMVSMNEMAEIVLSFEDKKLPIHHIPGPEGVRGRNSD---NTLIKEKL-- 314
+N+G+ + V + ++A+IV + I +P RG D TL KL
Sbjct: 222 PFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDGRGWPGDVKYMTLAVTKLMK 281
Query: 315 --GWAPSMKLKDGLRIT 329
GW P+M + ++ T
Sbjct: 282 LTGWRPTMTSAEAVKKT 298
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 107 bits (268), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 87/317 (27%), Positives = 144/317 (45%), Gaps = 29/317 (9%)
Query: 27 LRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLK 86
+RI VTG GFI SH+ +L G+ ++ D + E H+ DL+ D
Sbjct: 1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFVNPSAELHVRDLK--DYSWG 58
Query: 87 VTKGVDHVFNLAADMGGMGFIQSNHSVIMYN-NTMISFNMLEASRISGVKRFFYASSACI 145
D VF+ AA+ + + ++ +N N + +FN+LE +R +GV+ +ASS+ +
Sbjct: 59 AGIKGDVVFHFAANPEVR--LSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSSTV 116
Query: 146 YPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGP 205
Y + + T + P +P YG K A E +C Y + FG+ C R+ N+ GP
Sbjct: 117 YGDADVIPT------PEEEPYKPISVYGAAKAAGEVMCATYARLFGVRCLAVRYANVVGP 170
Query: 206 FGTWKGMEKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFRE--- 262
+ F K + + E+ GDG Q +S+ ++ + VE L K F E
Sbjct: 171 ----RLRHGVIYDFIMKLRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWKK-FEEMDA 225
Query: 263 ---PVNIGSDEMVSMNEMAEIVLSFEDKKLPIHHIPGPEGVRGRNSD---NTLIKEKL-- 314
+N+G+ + V + ++A+IV + I +P RG D TL KL
Sbjct: 226 PFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDGRGWPGDVKYMTLAVTKLMK 285
Query: 315 --GWAPSMKLKDGLRIT 329
GW P+M + ++ T
Sbjct: 286 LTGWRPTMTSAEAVKKT 302
>pdb|1E6U|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase
Length = 321
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 77/331 (23%), Positives = 139/331 (41%), Gaps = 32/331 (9%)
Query: 26 KLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCL 85
K R+ + G G + S I R+L+ G + + ++ + H+F
Sbjct: 3 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFF----------- 51
Query: 86 KVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACI 145
++ +D V+ AA +GG+ + + +Y N MI N++ A+ + V + + S+CI
Sbjct: 52 -ASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCI 110
Query: 146 YPEF-KQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYG 204
YP+ KQ L + P + Y + K+A +LC+ Y + +G + R N+YG
Sbjct: 111 YPKLAKQPMAESELLQGTLEPT--NEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYG 168
Query: 205 PFGTW--KGMEKAPAAFCRKALTSTDK---FEMWGDGLQTRSFTFIDECVEG---VLRLT 256
P + PA R + K +WG G R F +D+ V+ L
Sbjct: 169 PHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAAASIHVMELA 228
Query: 257 KSDFREP-------VNIGSDEMVSMNEMAEIVLSFED-KKLPIHHIPGPEGVRGRNSDNT 308
+ E +N+G+ ++ E+A+ + K + P+G + D T
Sbjct: 229 HEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVT 288
Query: 309 LIKEKLGWAPSMKLKDGLRITYFWIKEQIEK 339
+ +LGW + L+ GL TY W E ++
Sbjct: 289 RL-HQLGWYHEISLEAGLASTYQWFLENQDR 318
>pdb|1E7S|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase K140r
Length = 321
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 76/331 (22%), Positives = 138/331 (41%), Gaps = 32/331 (9%)
Query: 26 KLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCL 85
K R+ + G G + S I R+L+ G + + ++ + H+F
Sbjct: 3 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFF----------- 51
Query: 86 KVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACI 145
++ +D V+ AA +GG+ + + +Y N MI N++ A+ + V + + S+CI
Sbjct: 52 -ASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCI 110
Query: 146 YPEF-KQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYG 204
YP+ KQ L + P + Y + ++A +LC+ Y + +G + R N+YG
Sbjct: 111 YPKLAKQPMAESELLQGTLEPT--NEPYAIARIAGIKLCESYNRQYGRDYRSVMPTNLYG 168
Query: 205 PFGTW--KGMEKAPAAFCR---KALTSTDKFEMWGDGLQTRSFTFIDECVEG---VLRLT 256
P + PA R S +WG G R F +D+ V+ L
Sbjct: 169 PHDNFHPSNSHVIPALLRRFHEATAQSAPDVVVWGSGTPMREFLHVDDMAAASIHVMELA 228
Query: 257 KSDFREP-------VNIGSDEMVSMNEMAEIVLSFED-KKLPIHHIPGPEGVRGRNSDNT 308
+ E +N+G+ ++ E+A+ + K + P+G + D T
Sbjct: 229 HEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVT 288
Query: 309 LIKEKLGWAPSMKLKDGLRITYFWIKEQIEK 339
+ +LGW + L+ GL TY W E ++
Sbjct: 289 RL-HQLGWYHEISLEAGLASTYQWFLENQDR 318
>pdb|1E7Q|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase S107a
Length = 321
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 76/331 (22%), Positives = 138/331 (41%), Gaps = 32/331 (9%)
Query: 26 KLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCL 85
K R+ + G G + S I R+L+ G + + ++ + H+F
Sbjct: 3 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFF----------- 51
Query: 86 KVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACI 145
++ +D V+ AA +GG+ + + +Y N MI N++ A+ + V + + ++CI
Sbjct: 52 -ASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGASCI 110
Query: 146 YPEF-KQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYG 204
YP+ KQ L + P + Y + K+A +LC+ Y + +G + R N+YG
Sbjct: 111 YPKLAKQPMAESELLQGTLEPT--NEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYG 168
Query: 205 PFGTW--KGMEKAPAAFCR---KALTSTDKFEMWGDGLQTRSFTFIDECVEG---VLRLT 256
P + PA R S +WG G R F +D+ V+ L
Sbjct: 169 PHDNFHPSNSHVIPALLRRFHEATAQSAPDVVVWGSGTPMREFLHVDDMAAASIHVMELA 228
Query: 257 KSDFREP-------VNIGSDEMVSMNEMAEIVLSFED-KKLPIHHIPGPEGVRGRNSDNT 308
+ E +N+G+ ++ E+A+ + K + P+G + D T
Sbjct: 229 HEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVT 288
Query: 309 LIKEKLGWAPSMKLKDGLRITYFWIKEQIEK 339
+ +LGW + L+ GL TY W E ++
Sbjct: 289 RL-HQLGWYHEISLEAGLASTYQWFLENQDR 318
>pdb|1BSV|A Chain A, Gdp-Fucose Synthetase From Escherichia Coli Complex With
Nadph
pdb|1FXS|A Chain A, Gdp-fucose Synthetase From Escherichia Coli Complex With
Nadp
pdb|1GFS|A Chain A, Gdp-Fucose Synthetase From E. Coli
Length = 321
Score = 88.2 bits (217), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 76/331 (22%), Positives = 138/331 (41%), Gaps = 32/331 (9%)
Query: 26 KLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCL 85
K R+ + G G + S I R+L+ G + + ++ + H+F
Sbjct: 3 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFF----------- 51
Query: 86 KVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACI 145
++ +D V+ AA +GG+ + + +Y N MI N++ A+ + V + + S+CI
Sbjct: 52 -ASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCI 110
Query: 146 YPEF-KQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYG 204
YP+ KQ L + P + Y + K+A +LC+ Y + +G + R N+YG
Sbjct: 111 YPKLAKQPMAESELLQGTLEPT--NEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYG 168
Query: 205 PFGTW--KGMEKAPAAFCR---KALTSTDKFEMWGDGLQTRSFTFIDECVEG---VLRLT 256
P + PA R + +WG G R F +D+ V+ L
Sbjct: 169 PHDNFHPSNSHVIPALLRRFHEATAQNAPDVVVWGSGTPMREFLHVDDMAAASIHVMELA 228
Query: 257 KSDFREP-------VNIGSDEMVSMNEMAEIVLSFED-KKLPIHHIPGPEGVRGRNSDNT 308
+ E +N+G+ ++ E+A+ + K + P+G + D T
Sbjct: 229 HEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVT 288
Query: 309 LIKEKLGWAPSMKLKDGLRITYFWIKEQIEK 339
+ +LGW + L+ GL TY W E ++
Sbjct: 289 RL-HQLGWYHEISLEAGLASTYQWFLENQDR 318
>pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 92/347 (26%), Positives = 156/347 (44%), Gaps = 43/347 (12%)
Query: 13 YEELEREPYWPSEKLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHM-------- 64
YEE+ ++ + + I TG GFI S++ +L +I D H
Sbjct: 14 YEEITQQLIFSPKTWLI--TGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKT 71
Query: 65 ---TED--MFCHEFHLVDLRVMDNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNT 119
TE FC F D+R + C +V KGVDHV + AA +G + +S I N T
Sbjct: 72 LVSTEQWSRFC--FIEGDIRDLTTCEQVMKGVDHVLHQAA-LGSVP--RSIVDPITTNAT 126
Query: 120 MIS--FNMLEASRISGVKRFFYASSACIY---PEFKQLETNVSLKESDAWPAEPQDAYGL 174
I+ N+L A++ + V+ F YA+S+ Y P ++E N+ P Y +
Sbjct: 127 NITGFLNILHAAKNAQVQSFTYAASSSTYGDHPALPKVEENI---------GNPLSPYAV 177
Query: 175 EKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGMEKAPAAFCRKALTSTDKFEMWG 234
K +E + Y + +G + R+ N++G G A A+ D + G
Sbjct: 178 TKYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYING 237
Query: 235 DGLQTRSFTFIDECVE-GVLR-LTKSDFREPV-NIGSDEMVSMNEMA-----EIVLSFED 286
DG +R F +ID ++ +L L K ++ + N+ + ++NE++ E+ L
Sbjct: 238 DGETSRDFCYIDNVIQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHI 297
Query: 287 KKLPIHHIPGPEG-VRGRNSDNTLIKEKLGWAPSMKLKDGLRITYFW 332
KL I + G VR +D T + L + P++K+++GLR++ W
Sbjct: 298 DKLSIKYREFRSGDVRASQADVTKAIDLLKYRPNIKIREGLRLSMPW 344
>pdb|1E7R|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase Y136e
Length = 321
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/331 (23%), Positives = 138/331 (41%), Gaps = 32/331 (9%)
Query: 26 KLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCL 85
K R+ + G G + S I R+L+ G + + ++ + H+F
Sbjct: 3 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFF----------- 51
Query: 86 KVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACI 145
++ +D V+ AA +GG+ + + +Y N MI N++ A+ + V + + S+CI
Sbjct: 52 -ASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCI 110
Query: 146 YPEF-KQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYG 204
YP+ KQ L + P +A + K+A +LC+ Y + +G + R N+YG
Sbjct: 111 YPKLAKQPMAESELLQGTLEPTNEPEA--IAKIAGIKLCESYNRQYGRDYRSVMPTNLYG 168
Query: 205 PFGTW--KGMEKAPAAFCR---KALTSTDKFEMWGDGLQTRSFTFIDECVEG---VLRLT 256
P + PA R S +WG G R F +D+ V+ L
Sbjct: 169 PHDNFHPSNSHVIPALLRRFHEATAQSAPDVVVWGSGTPMREFLHVDDMAAASIHVMELA 228
Query: 257 KSDFREP-------VNIGSDEMVSMNEMAEIVLSFED-KKLPIHHIPGPEGVRGRNSDNT 308
+ E +N+G+ ++ E+A+ + K + P+G + D T
Sbjct: 229 HEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVT 288
Query: 309 LIKEKLGWAPSMKLKDGLRITYFWIKEQIEK 339
+ +LGW + L+ GL TY W E ++
Sbjct: 289 RL-HQLGWYHEISLEAGLASTYQWFLENQDR 318
>pdb|1BWS|A Chain A, Crystal Structure Of Gdp-4-Keto-6-Deoxy-D-Mannose
EpimeraseREDUCTASE From Escherichia Coli A Key Enzyme In
The Biosynthesis Of Gdp-L- Fucose
Length = 321
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/331 (22%), Positives = 138/331 (41%), Gaps = 32/331 (9%)
Query: 26 KLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCL 85
K R+ + G G + S I R+L+ G + + ++ + H+F
Sbjct: 3 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFF----------- 51
Query: 86 KVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACI 145
++ +D V+ AA +GG+ + + +Y N MI N++ A+ + V + + S+CI
Sbjct: 52 -ASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCI 110
Query: 146 YPEF-KQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYG 204
YP+ KQ L + P + Y + K+A +LC+ Y + +G + R N+YG
Sbjct: 111 YPKLAKQPMAESELLQGTLEPT--NEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYG 168
Query: 205 PFGTW--KGMEKAPAAFCR---KALTSTDKFEMWGDGLQTRSFTFIDECVEG---VLRLT 256
P + PA R + +WG G R F +D+ V+ L
Sbjct: 169 PHDNFHPSNSHVIPALLRRFHEATAQNAPDVVVWGSGTPMREFLHVDDMAAASIHVMELA 228
Query: 257 KSDFREP-------VNIGSDEMVSMNEMAEIVLSFED-KKLPIHHIPGPEGVRGRNSDNT 308
+ E +N+G+ ++ ++A+ + K + P+G + D T
Sbjct: 229 HEVWLENTQPMLSHINVGTGVDCTIRDLAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVT 288
Query: 309 LIKEKLGWAPSMKLKDGLRITYFWIKEQIEK 339
+ +LGW + L+ GL TY W E ++
Sbjct: 289 RL-HQLGWYHEISLEAGLASTYQWFLENQDR 318
>pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|B Chain B, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|C Chain C, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|D Chain D, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
Length = 364
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 92/347 (26%), Positives = 156/347 (44%), Gaps = 43/347 (12%)
Query: 13 YEELEREPYWPSEKLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHM-------- 64
YEE+ ++ + + I TG GFI S++ +L +I D H
Sbjct: 27 YEEITQQLIFSPKTWLI--TGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKT 84
Query: 65 ---TED--MFCHEFHLVDLRVMDNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNT 119
TE FC F D+R + C +V KGVDHV + AA +G + +S I N T
Sbjct: 85 LVSTEQWSRFC--FIEGDIRDLTTCEQVMKGVDHVLHQAA-LGSVP--RSIVDPITTNAT 139
Query: 120 MIS--FNMLEASRISGVKRFFYASSACIY---PEFKQLETNVSLKESDAWPAEPQDAYGL 174
I+ N+L A++ + V+ F YA+S+ Y P ++E N+ P Y +
Sbjct: 140 NITGFLNILHAAKNAQVQSFTYAASSSTYGDHPALPKVEENI---------GNPLSPYAV 190
Query: 175 EKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGMEKAPAAFCRKALTSTDKFEMWG 234
K +E + Y + +G + R+ N++G G A A+ D + G
Sbjct: 191 TKYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYING 250
Query: 235 DGLQTRSFTFIDECVE-GVLR-LTKSDFREPV-NIGSDEMVSMNEMA-----EIVLSFED 286
DG +R F +ID ++ +L L K ++ + N+ + ++NE++ E+ L
Sbjct: 251 DGETSRDFCYIDNVIQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHI 310
Query: 287 KKLPIHHIPGPEG-VRGRNSDNTLIKEKLGWAPSMKLKDGLRITYFW 332
KL I + G VR +D T + L + P++K+++GLR++ W
Sbjct: 311 DKLSIKYREFRSGDVRHSQADVTKAIDLLKYRPNIKIREGLRLSMPW 357
>pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUD|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
Length = 351
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 92/347 (26%), Positives = 156/347 (44%), Gaps = 43/347 (12%)
Query: 13 YEELEREPYWPSEKLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHM-------- 64
YEE+ ++ + + I TG GFI S++ +L +I D H
Sbjct: 14 YEEITQQLIFSPKTWLI--TGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKT 71
Query: 65 ---TED--MFCHEFHLVDLRVMDNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNT 119
TE FC F D+R + C +V KGVDHV + AA +G + +S I N T
Sbjct: 72 LVSTEQWSRFC--FIEGDIRDLTTCEQVMKGVDHVLHQAA-LGSVP--RSIVDPITTNAT 126
Query: 120 MIS--FNMLEASRISGVKRFFYASSACIY---PEFKQLETNVSLKESDAWPAEPQDAYGL 174
I+ N+L A++ + V+ F YA+S+ Y P ++E N+ P Y +
Sbjct: 127 NITGFLNILHAAKNAQVQSFTYAASSSTYGDHPALPKVEENI---------GNPLSPYAV 177
Query: 175 EKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGMEKAPAAFCRKALTSTDKFEMWG 234
K +E + Y + +G + R+ N++G G A A+ D + G
Sbjct: 178 TKYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYING 237
Query: 235 DGLQTRSFTFIDECVE-GVLR-LTKSDFREPV-NIGSDEMVSMNEMA-----EIVLSFED 286
DG +R F +ID ++ +L L K ++ + N+ + ++NE++ E+ L
Sbjct: 238 DGETSRDFCYIDNVIQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHI 297
Query: 287 KKLPIHHIPGPEG-VRGRNSDNTLIKEKLGWAPSMKLKDGLRITYFW 332
KL I + G VR +D T + L + P++K+++GLR++ W
Sbjct: 298 DKLSIKYREFRSGDVRHSQADVTKAIDLLKYRPNIKIREGLRLSMPW 344
>pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 92/347 (26%), Positives = 156/347 (44%), Gaps = 43/347 (12%)
Query: 13 YEELEREPYWPSEKLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHM-------- 64
YEE+ ++ + + I TG GFI S++ +L +I D H
Sbjct: 8 YEEITQQLIFSPKTWLI--TGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKT 65
Query: 65 ---TED--MFCHEFHLVDLRVMDNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNT 119
TE FC F D+R + C +V KGVDHV + AA +G + +S I N T
Sbjct: 66 LVSTEQWSRFC--FIEGDIRDLTTCEQVMKGVDHVLHQAA-LGSVP--RSIVDPITTNAT 120
Query: 120 MIS--FNMLEASRISGVKRFFYASSACIY---PEFKQLETNVSLKESDAWPAEPQDAYGL 174
I+ N+L A++ + V+ F YA+S+ Y P ++E N+ P Y +
Sbjct: 121 NITGFLNILHAAKNAQVQSFTYAASSSTYGDHPALPKVEENI---------GNPLSPYAV 171
Query: 175 EKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGMEKAPAAFCRKALTSTDKFEMWG 234
K +E + Y + +G + R+ N++G G A A+ D + G
Sbjct: 172 TKYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYING 231
Query: 235 DGLQTRSFTFIDECVE-GVLR-LTKSDFREPV-NIGSDEMVSMNEMA-----EIVLSFED 286
DG +R F +ID ++ +L L K ++ + N+ + ++NE++ E+ L
Sbjct: 232 DGETSRDFCYIDNVIQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHI 291
Query: 287 KKLPIHHIPGPEG-VRGRNSDNTLIKEKLGWAPSMKLKDGLRITYFW 332
KL I + G VR +D T + L + P++K+++GLR++ W
Sbjct: 292 DKLSIKYREFRSGDVRHSQADVTKAIDLLKYRPNIKIREGLRLSMPW 338
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 81/329 (24%), Positives = 137/329 (41%), Gaps = 34/329 (10%)
Query: 27 LRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLK 86
+R+ VTG GFI SH R+L + G Y D +E + D + + +L +D +
Sbjct: 1 MRLLVTGGAGFIGSHFVRQLLA-GAY---PDVPADEVIVLDSLTYAGNRANLAPVDADPR 56
Query: 87 V----------------TKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASR 130
+ +GVD + + AA+ I + SV N + +L+ +
Sbjct: 57 LRFVHGDIRDAGLLARELRGVDAIVHFAAESHVDRSI-AGASVFTETNVQGTQTLLQCAV 115
Query: 131 ISGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDF 190
+GV R + S+ +Y S +++ P EP Y K S+ + + Y + +
Sbjct: 116 DAGVGRVVHVSTNQVYGSID------SGSWTESSPLEPNSPYAASKAGSDLVARAYHRTY 169
Query: 191 GIECRVGRFHNIYGPFGTWKGMEKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECVE 250
G++ R+ R N YGP+ + EK F L ++GDG R + D+
Sbjct: 170 GLDVRITRCCNNYGPY---QHPEKLIPLFVTN-LLDGGTLPLYGDGANVREWVHTDDHCR 225
Query: 251 GV-LRLTKSDFREPVNIGSDEMVSMNEMAEIVL-SFEDKKLPIHHIPGPEGVRGRNS-DN 307
G+ L L E +IG ++ E+ I+L S + + +G R S D
Sbjct: 226 GIALVLAGGRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYSLDG 285
Query: 308 TLIKEKLGWAPSMKLKDGLRITYFWIKEQ 336
I+ +LG+ P + DGL T W +E
Sbjct: 286 GKIERELGYRPQVSFADGLARTVRWYREN 314
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
From Streptomyces Venezuelae With Nad And Tyd Bound
Length = 337
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 81/329 (24%), Positives = 137/329 (41%), Gaps = 34/329 (10%)
Query: 27 LRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLK 86
+R+ VTG GFI SH R+L + G Y D +E + D + + +L +D +
Sbjct: 1 MRLLVTGGAGFIGSHFVRQLLA-GAY---PDVPADEVIVLDSLTYAGNRANLAPVDADPR 56
Query: 87 V----------------TKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASR 130
+ +GVD + + AA+ I + SV N + +L+ +
Sbjct: 57 LRFVHGDIRDAGLLARELRGVDAIVHFAAESHVDRSI-AGASVFTETNVQGTQTLLQCAV 115
Query: 131 ISGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDF 190
+GV R + S+ +Y S +++ P EP Y K S+ + + Y + +
Sbjct: 116 DAGVGRVVHVSTDEVYGSID------SGSWTESSPLEPNSPYAASKAGSDLVARAYHRTY 169
Query: 191 GIECRVGRFHNIYGPFGTWKGMEKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECVE 250
G++ R+ R N YGP+ + EK F L ++GDG R + D+
Sbjct: 170 GLDVRITRCCNNYGPY---QHPEKLIPLFVTN-LLDGGTLPLYGDGANVREWVHTDDHCR 225
Query: 251 GV-LRLTKSDFREPVNIGSDEMVSMNEMAEIVL-SFEDKKLPIHHIPGPEGVRGRNS-DN 307
G+ L L E +IG ++ E+ I+L S + + +G R S D
Sbjct: 226 GIALVLAGGRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYSLDG 285
Query: 308 TLIKEKLGWAPSMKLKDGLRITYFWIKEQ 336
I+ +LG+ P + DGL T W +E
Sbjct: 286 GKIERELGYRPQVSFADGLARTVRWYREN 314
>pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-N-Acetylgalactosamine
pdb|1SB9|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-Glucose
Length = 352
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 85/347 (24%), Positives = 148/347 (42%), Gaps = 43/347 (12%)
Query: 13 YEELEREPYWPSEKLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEH--------- 63
YEEL +E P++ +TG GFI S++ L ++ D H
Sbjct: 16 YEELRKE--LPAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRS 73
Query: 64 -MTEDMFCH-EFHLVDLRVMDNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMI 121
++E + + +F D+R +D+C GVD+V + AA +G + +S + I N T I
Sbjct: 74 LVSEKQWSNFKFIQGDIRNLDDCNNACAGVDYVLHQAA-LGSVP--RSINDPITSNATNI 130
Query: 122 S--FNMLEASRISGVKRFFYASSACIY---PEFKQLETNVSLKESDAWPAEPQDAYGLEK 176
NML A+R + V+ F YA+S+ Y P ++E + +P Y + K
Sbjct: 131 DGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKVEDTI---------GKPLSPYAVTK 181
Query: 177 LASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGMEKAPAAFCRKALTSTDKFEMWGDG 236
+E +++ +G R+ N++G G A ++ D + GDG
Sbjct: 182 YVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDG 241
Query: 237 LQTRSFTFIDECVEGVLRLTKS--DFREPV-NIGSDEMVSMNE--------MAEIVLSFE 285
+R F +I+ V+ L + D R V NI S+N+ +AE +S+
Sbjct: 242 ETSRDFCYIENTVQANLLAATAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYH 301
Query: 286 DKKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPSMKLKDGLRITYFW 332
+ P++ VR +D + + LG+AP + G+ + W
Sbjct: 302 --REPVYRDFREGDVRHSLADISKAAKLLGYAPKYDVSAGVALAMPW 346
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 73/310 (23%), Positives = 129/310 (41%), Gaps = 18/310 (5%)
Query: 26 KLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCL 85
K RI +TG GFI H+AR L + G + D + M +F ++ V++
Sbjct: 7 KHRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKF--LEKPVLELEE 64
Query: 86 KVTKGVDHVFNLAADMGGMGFIQSNHSVIMY-NNTMISFNMLEASRISGVKRFFYASSAC 144
+ V V++LA+ +S + Y +N ++L GV + S+
Sbjct: 65 RDLSDVRLVYHLASHKS---VPRSFKQPLDYLDNVDSGRHLLALCTSVGVPKVVVGSTCE 121
Query: 145 IYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELC-KHYTKDFGIECRVGRFHNIY 203
+Y + L T + P P+ Y K+ E + H E + RF N+Y
Sbjct: 122 VYGQADTLPT------PEDSPLSPRSPYAASKVGLEMVAGAHQRASVAPEVGIVRFFNVY 175
Query: 204 GPFGTWKGMEKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREP 263
GP + C LT ++ + GDG Q R FT+I + V+ ++ L
Sbjct: 176 GPGERPDALVPR---LCANLLTR-NELPVEGDGEQRRDFTYITDVVDKLVALANRPLPSV 231
Query: 264 VNIGSDEMVSMNEMAEIVLSFEDKKLPIHHIPGPEGVRGRNSDNTLIKEKLG-WAPSMKL 322
VN GS + +S+N++ I+ + P P + +D L ++G + + +
Sbjct: 232 VNFGSGQSLSVNDVIRILQATSPAAEVARKQPRPNEITEFRADTALQTRQIGERSGGIGI 291
Query: 323 KDGLRITYFW 332
++G+R+T W
Sbjct: 292 EEGIRLTLEW 301
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-glucose
4- Epimerase Complex With Nad
Length = 311
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 77/321 (23%), Positives = 129/321 (40%), Gaps = 36/321 (11%)
Query: 27 LRISVTGAGGFIASHIARRLKSEGHYIIASD---WKKNEHMTEDMFCHEFHLVDLRVMDN 83
+R+ VTG GFI SHI L + G + D K E++ + + F VDLR +
Sbjct: 1 MRVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRENVPKGV---PFFRVDLRDKEG 57
Query: 84 CLKVTKGV--DHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNML--------EASRISG 133
+ + HV + AA Q++ V + + ++ F + EA R G
Sbjct: 58 VERAFREFRPTHVSHQAA--------QASVKVSV-EDPVLDFEVNLLGGLNLLEACRQYG 108
Query: 134 VKRFFYASSA-CIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGI 192
V++ +AS+ IY E + E + + WP P+ Y K A E Y + +G+
Sbjct: 109 VEKLVFASTGGAIYGEVPEGE-----RAEETWPPRPKSPYAASKAAFEHYLSVYGQSYGL 163
Query: 193 ECRVGRFHNIYGPFGTWKGMEKAPAAFCRKAL----TSTDKFEMWGDGLQTRSFTFIDEC 248
+ R+ N+YGP G A F + L + + GD R + ++ +
Sbjct: 164 KWVSLRYGNVYGPRQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDYVYVGDV 223
Query: 249 VEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFEDKKLPIHHIPGPEGVRGRNSDNT 308
E L N+G+ E + E+ V K + P G R+ +
Sbjct: 224 AE-AHALALFSLEGIYNVGTGEGHTTREVLMAVAEAAGKAPEVQPAPPRPGDLERSVLSP 282
Query: 309 LIKEKLGWAPSMKLKDGLRIT 329
L GW P + ++G+R+T
Sbjct: 283 LKLMAHGWRPKVGFQEGIRLT 303
>pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+
pdb|2Q1S|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nadh
pdb|2Q1T|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
Length = 377
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 81/358 (22%), Positives = 141/358 (39%), Gaps = 51/358 (14%)
Query: 29 ISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHE---------FHLVDLR 79
+ V G GF+ S++ +RL G H+ +++ E +
Sbjct: 35 VMVVGGAGFVGSNLVKRLLELG--------VNQVHVVDNLLSAEKINVPDHPAVRFSETS 86
Query: 80 VMDNCL--KVTKGVDHVFNLAADMGGMGFIQ---SNHSVIMYNNTMISFNMLEASR-ISG 133
+ D+ L + D+VF+LA G I ++H NNT+ + + E +
Sbjct: 87 ITDDALLASLQDEYDYVFHLATYHGNQSSIHDPLADHE----NNTLTTLKLYERLKHFKR 142
Query: 134 VKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDA-YGLEKLASEELCKHYTKDFGI 192
+K+ Y+++ C E K + + +E+D D+ Y + K+ E +Y K +
Sbjct: 143 LKKVVYSAAGCSIAE-KTFDDAKATEETDIVSLHNNDSPYSMSKIFGEFYSVYYHKQHQL 201
Query: 193 ECRVGRFHNIYGP-----FGTWKGM-----EKAPAAFCRKALTSTDKFEMWGDGLQTRSF 242
RF N+YGP G W+G F KAL + G+ TR F
Sbjct: 202 PTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGM-PLPLENGGVATRDF 260
Query: 243 TFIDECVEGVLRLTKSDFREPV-NIGSDEMVSMNEMAEIVLSFEDKKLPIHHIPG-PEGV 300
F+++ G++ V NI S + S+ ++A + + +P P
Sbjct: 261 IFVEDVANGLIACAADGTPGGVYNIASGKETSIADLATKINEITGNNTELDRLPKRPWDN 320
Query: 301 RG-RNSDNTLIKEKLGWAPSMKLKDGLRITYFWIK------EQIEKEKTQGIDLSVYG 351
G R + +LG++ + + DGLR T W K EQI ++ L+ YG
Sbjct: 321 SGKRFGSPEKARRELGFSADVSIDDGLRKTIEWTKANLAVIEQIMRKHDSA--LATYG 376
>pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|B Chain B, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|C Chain C, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|D Chain D, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|E Chain E, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|F Chain F, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
Length = 311
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/295 (24%), Positives = 137/295 (46%), Gaps = 24/295 (8%)
Query: 27 LRISVTGAGGFIASHIARRLKSEGHY-IIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCL 85
L+I+VTG GF+ ++ +K++G+ II + N+ + + +E+ + D + D +
Sbjct: 3 LKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKAIND----YEYRVSDYTLED-LI 57
Query: 86 KVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACI 145
VD V +LAA G G I H +N +++ N+ +A + + YAS+
Sbjct: 58 NQLNDVDAVVHLAATRGSQGKISEFH-----DNEILTQNLYDACYENNISNIVYASTISA 112
Query: 146 YPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGP 205
Y + ET++ E + P P YG+ KLA E + Y++ G+ + RF ++YG
Sbjct: 113 YSD----ETSLPWNEKE-LPL-PDLXYGVSKLACEHIGNIYSRKKGLCIKNLRFAHLYG- 165
Query: 206 FGTWKGMEKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECVEGVL-RLTKSDFREPV 264
F F R+A ++ + + + R F + + + V+ L +
Sbjct: 166 FNEKNNY--XINRFFRQAFHG-EQLTLHANSVAKREFLYAKDAAKSVIYALKQEKVSGTF 222
Query: 265 NIGSDEMVSMNEMAEIV-LSFEDK-KLPIHHIPGPEGVRGRNSDNTLIKEKLGWA 317
NIGS + ++ E+A + +F +K L + + EG+ D++ KE L ++
Sbjct: 223 NIGSGDALTNYEVANTINNAFGNKDNLLVKNPNANEGIHSSYXDSSKAKELLDFS 277
>pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|B Chain B, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|C Chain C, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|D Chain D, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|E Chain E, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|F Chain F, Crystal Structure Of Udp-Glucose 4-Epimerase
Length = 330
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 77/330 (23%), Positives = 142/330 (43%), Gaps = 31/330 (9%)
Query: 29 ISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKV- 87
I + G G+I SH ++L EG ++ D + H +F+ DLR V
Sbjct: 4 ILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAITEGAKFYNGDLRDKAFLRDVF 63
Query: 88 -TKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMI-SFNMLEASRISGVKRFFYASSACI 145
+ ++ V + AAD + + + YNN + + +LE V +F ++S+A
Sbjct: 64 TQENIEAVMHFAAD--SLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFIFSSTAAT 121
Query: 146 YPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYG- 204
Y E ++ ++ +E+ P + YG KLA E++ Y++ + ++ R+ N+ G
Sbjct: 122 YGE---VDVDLITEET---MTNPTNTYGETKLAIEKMLHWYSQASNLRYKIFRYFNVAGA 175
Query: 205 -PFGTWKGMEKAPAA-----FCRKALTSTDKFEMWGDGLQT------RSFTFIDECVE-- 250
P G G + P + AL +K M+GD T R + +++ V
Sbjct: 176 TPNGII-GEDHRPETHLIPLVLQVALGQREKIMMFGDDYNTPDGTCIRDYIHVEDLVAAH 234
Query: 251 --GVLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFEDKKLPIHHIPGPEGVRGR-NSDN 307
G+ L + N+G+ S+ E+ + V + ++P P G R + +
Sbjct: 235 FLGLKDLQNGGESDFYNLGNGNGFSVKEIVDAVREVTNHEIPAEVAPRRAGDPARLVASS 294
Query: 308 TLIKEKLGWAPS-MKLKDGLRITYFWIKEQ 336
KEKLGW P + +K + + W ++Q
Sbjct: 295 QKAKEKLGWDPRYVNVKTIIEHAWNWHQKQ 324
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 80/323 (24%), Positives = 141/323 (43%), Gaps = 33/323 (10%)
Query: 27 LRISVTGAGGFIASHIARRLKSEGHYIIASDWK-------------KNEHMTEDMFCHEF 73
+++ VTG GFI S+ R + E H DW+ N ED + F
Sbjct: 4 MKLLVTGGMGFIGSNFIRYI-LEKH----PDWEVINIDKLGYGSNPANLKDLEDDPRYTF 58
Query: 74 HLVDLRVMDNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISG 133
D+ + ++ + VD V +LAA+ I S+ + +++N + ++ +LE+ R
Sbjct: 59 VKGDVADYELVKELVRKVDGVVHLAAESHVDRSI-SSPEIFLHSNVIGTYTLLESIRREN 117
Query: 134 VK-RFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGI 192
+ RF + S+ +Y + + S E+D P Y K AS+ L +T+ + +
Sbjct: 118 PEVRFVHVSTDEVYGDILK----GSFTENDR--LMPSSPYSATKAASDMLVLGWTRTYNL 171
Query: 193 ECRVGRFHNIYGPFGTWKGMEKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECVEGV 252
+ R N YGP+ + + P R +L K ++G G R + ++++ V +
Sbjct: 172 NASITRCTNNYGPYQFPEKL--IPKTIIRASLGL--KIPIYGTGKNVRDWLYVEDHVRAI 227
Query: 253 -LRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFEDK-KLPIHHIPGPEGVRGRNS-DNTL 309
L L K + RE NI + E + E+ +I+L K + I + G R S D+
Sbjct: 228 ELVLLKGESREIYNISAGEEKTNLEVVKIILRLMGKGEELIELVEDRPGHDLRYSLDSWK 287
Query: 310 IKEKLGWAPSMKLKDGLRITYFW 332
I L W P +G++ T W
Sbjct: 288 ITRDLKWRPKYTFDEGIKKTIDW 310
>pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|B Chain B, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|C Chain C, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|D Chain D, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|E Chain E, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
Length = 362
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 121/277 (43%), Gaps = 37/277 (13%)
Query: 25 EKLRISVTGAGGFIASHIARRLKSEGH----YIIASDWKKNEHMTEDMFCHEFHLVDL-- 78
E I +TG GF+ S++A + E H ++ ++ N + + H +L
Sbjct: 9 ENQTILITGGAGFVGSNLAFHFQ-ENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIG 67
Query: 79 -------RVMDNCLKVTK----GVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLE 127
++N L + + D++F+ AA N ++M N N+LE
Sbjct: 68 FKGEVIAADINNPLDLRRLEKLHFDYLFHQAAVSDTTML---NQELVMKTNYQAFLNLLE 124
Query: 128 ASRISGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYT 187
+R S + YASSA +Y K NV K P++ YG KL +E ++
Sbjct: 125 IAR-SKKAKVIYASSAGVYGNTK--APNVVGKNE-----SPENVYGFSKLCMDEFVLSHS 176
Query: 188 KDFGIECRVG-RFHNIYGPFGTWKGMEKAPAAFCRKALTST--DKFEMWGDGLQTRSFTF 244
D +VG R+ N+YGP +K EK + + AL + + +++ G Q R F +
Sbjct: 177 ND---NVQVGLRYFNVYGPREFYK--EKTASMVLQLALGAMAFKEVKLFEFGEQLRDFVY 231
Query: 245 IDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIV 281
I++ ++ ++ K+ N+G + S NE+ I+
Sbjct: 232 IEDVIQANVKAMKAQKSGVYNVGYSQARSYNEIVSIL 268
>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
Length = 348
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 79/328 (24%), Positives = 137/328 (41%), Gaps = 35/328 (10%)
Query: 28 RISVTGAGGFIAS---HIARRLKSEGHYIIASD--WKKNEHMTEDMFCHEFHLVDLRVMD 82
I VTG GFI S H + H + + N+ E + LV + D
Sbjct: 6 NIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIAD 65
Query: 83 NCL--KVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYA 140
L K+ D + + AA+ + ++ S ++ N + ++ +LEA+R + RF +
Sbjct: 66 AELVDKLAAKADAIVHYAAESHNDNSL-NDPSPFIHTNFIGTYTLLEAARKYDI-RFHHV 123
Query: 141 SSACIYPEFKQLETNVSLKESDAWPAE---------PQDAYGLEKLASEELCKHYTKDFG 191
S+ +Y + E L P E P Y K AS+ + K + + FG
Sbjct: 124 STDEVYGDLPLRE---DLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVRSFG 180
Query: 192 IECRVGRFHNIYGPFGTWKGMEKAPAAFCRKALTST---DKFEMWGDGLQTRSFTFIDEC 248
++ + N YGP+ + +EK F + +T+ K +++G+G R + ++
Sbjct: 181 VKATISNCSNNYGPY---QHIEK----FIPRQITNILAGIKPKLYGEGKNVRDWIHTNDH 233
Query: 249 VEGVLR-LTKSDFREPVNIGSDEMVSMNEMAEIVL-SFEDKKLPIHHIPGPEGVRGRNS- 305
GV LTK E IG+D + E+ E++L K H+ G R +
Sbjct: 234 STGVWAILTKGRMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVTDRAGHDLRYAI 293
Query: 306 DNTLIKEKLGWAPSM-KLKDGLRITYFW 332
D + ++++LGW P +GL T W
Sbjct: 294 DASKLRDELGWTPQFTDFSEGLEETIQW 321
>pdb|4ID9|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4ID9|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4IDG|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
pdb|4IDG|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
Length = 347
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 80/171 (46%), Gaps = 13/171 (7%)
Query: 29 ISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVT 88
I VTG+ G + + L+++G + D + + E++ L D + + + +
Sbjct: 22 ILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSGTGGEEVVGS---LEDGQALSDAIM-- 76
Query: 89 KGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACIYPE 148
GV V +L A M + ++ + N + +L+A+ +GV+RF +ASS +YPE
Sbjct: 77 -GVSAVLHLGAFMS---WAPADRDRMFAVNVEGTRRLLDAASAAGVRRFVFASSGEVYPE 132
Query: 149 FKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRF 199
+ L ++ P P YGL KL EEL + + + +E + RF
Sbjct: 133 NRP----EFLPVTEDHPLCPNSPYGLTKLLGEELVRFHQRSGAMETVILRF 179
>pdb|3RFT|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFV|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
Length = 267
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 77/191 (40%), Gaps = 25/191 (13%)
Query: 28 RISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKV 87
R+ VTGA G + + RL + +D + + C + L D ++ +
Sbjct: 5 RLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPAGPNEECVQCDLADANAVNAMVAG 64
Query: 88 TKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASS---AC 144
G+ H +GG+ ++ I+ N + +N+ EA+R G R +ASS
Sbjct: 65 CDGIVH-------LGGIS-VEKPFEQILQGNIIGLYNLYEAARAHGQPRIVFASSNHTIG 116
Query: 145 IYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRF----- 199
YP+ ++L +V PA P YG+ K E L + Y FG E + R
Sbjct: 117 YYPQTERLGPDV--------PARPDGLYGVSKCFGENLARMYFDKFGQETALVRIGSCTP 168
Query: 200 -HNIYGPFGTW 209
N Y TW
Sbjct: 169 EPNNYRMLSTW 179
>pdb|3AY3|A Chain A, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|B Chain B, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|C Chain C, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|D Chain D, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
Length = 267
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 75/172 (43%), Gaps = 25/172 (14%)
Query: 28 RISVTGAGGFIASHIARRLKSEGHYIIASD---WKKNEHMTEDMFCHEFHLVDLRVMDNC 84
R+ VTGA G + S I L + H + SD E E + C L D + + +
Sbjct: 4 RLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAAEAHEEIVACD---LADAQAVHDL 60
Query: 85 LKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASS-- 142
+K G+ H +GG+ ++ + I+ N + ++N+ EA+R G R +ASS
Sbjct: 61 VKDCDGIIH-------LGGVS-VERPWNDILQANIIGAYNLYEAARNLGKPRIVFASSNH 112
Query: 143 -ACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIE 193
YP +++T V P P YGL K E+L Y F IE
Sbjct: 113 TIGYYPRTTRIDTEV--------PRRPDSLYGLSKCFGEDLASLYYHKFDIE 156
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 76/336 (22%), Positives = 136/336 (40%), Gaps = 38/336 (11%)
Query: 27 LRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEH-----MTEDMFCHEFHLVDLRVM 81
+R+ VTG G+I SH +L GH +I D N + E + V+ +
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 82 DNCLKVTKGVDHVFNLAADMGGMGFI-QSNHSVIMY--NNTMISFNMLEASRISGVKRFF 138
+ L DH + G+ + +S + Y NN + ++ A R + VK F
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 139 YASSACIYPEFKQLETNVSLKESDAWP-AEPQDAYGLEKLASEELCKHYTK---DFGIEC 194
++SSA +Y + N + +++P PQ YG KL E++ K D+ I
Sbjct: 121 FSSSATVYGD------NPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIAL 174
Query: 195 RVGRFHNIYG--PFGTW----KGMEKAPAAFCRK-ALTSTDKFEMWG------DGLQTRS 241
R+ N G P G +G+ + + A+ D ++G DG R
Sbjct: 175 L--RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRD 232
Query: 242 FTFIDECVEG-VLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFED---KKLPIHHIPGP 297
+ + + +G V+ + K + V+I + N + ++V +F K + H P
Sbjct: 233 YIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRR 292
Query: 298 EG-VRGRNSDNTLIKEKLGWAPSMKLKDGLRITYFW 332
EG + +D + +L W + L + + T+ W
Sbjct: 293 EGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 76/336 (22%), Positives = 136/336 (40%), Gaps = 38/336 (11%)
Query: 27 LRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEH-----MTEDMFCHEFHLVDLRVM 81
+R+ VTG G+I SH +L GH +I D N + E + V+ +
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 82 DNCLKVTKGVDHVFNLAADMGGMGFI-QSNHSVIMY--NNTMISFNMLEASRISGVKRFF 138
+ L DH + G+ + +S + Y NN + ++ A R + VK F
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 139 YASSACIYPEFKQLETNVSLKESDAWP-AEPQDAYGLEKLASEELCKHYTK---DFGIEC 194
++SSA +Y + N + +++P PQ YG KL E++ K D+ I
Sbjct: 121 FSSSATVYGD------NPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIAL 174
Query: 195 RVGRFHNIYG--PFGTW----KGMEKAPAAFCRK-ALTSTDKFEMWG------DGLQTRS 241
R+ N G P G +G+ + + A+ D ++G DG R
Sbjct: 175 L--RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRD 232
Query: 242 FTFIDECVEG-VLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFED---KKLPIHHIPGP 297
+ + + +G V+ + K + V+I + N + ++V +F K + H P
Sbjct: 233 YIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRR 292
Query: 298 EG-VRGRNSDNTLIKEKLGWAPSMKLKDGLRITYFW 332
EG + +D + +L W + L + + T+ W
Sbjct: 293 EGDLPACWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 75/336 (22%), Positives = 136/336 (40%), Gaps = 38/336 (11%)
Query: 27 LRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEH-----MTEDMFCHEFHLVDLRVM 81
+R+ VTG G+I SH +L GH +I D N + E + V+ +
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 82 DNCLKVTKGVDHVFNLAADMGGMGFI-QSNHSVIMY--NNTMISFNMLEASRISGVKRFF 138
+ L DH + G+ + +S + Y NN + ++ A R + VK F
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 139 YASSACIYPEFKQLETNVSLKESDAWP-AEPQDAYGLEKLASEELCKHYTK---DFGIEC 194
++S+A +Y + N + +++P PQ YG KL E++ K D+ I
Sbjct: 121 FSSTATVYGD------NPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIAL 174
Query: 195 RVGRFHNIYG--PFGTW----KGMEKAPAAFCRK-ALTSTDKFEMWG------DGLQTRS 241
R+ N G P G +G+ + + A+ D ++G DG R
Sbjct: 175 L--RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRD 232
Query: 242 FTFIDECVEG-VLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFED---KKLPIHHIPGP 297
+ + + +G V+ + K + V+I + N + ++V +F K + H P
Sbjct: 233 YIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRR 292
Query: 298 EG-VRGRNSDNTLIKEKLGWAPSMKLKDGLRITYFW 332
EG + +D + +L W + L + + T+ W
Sbjct: 293 EGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 75/336 (22%), Positives = 136/336 (40%), Gaps = 38/336 (11%)
Query: 27 LRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEH-----MTEDMFCHEFHLVDLRVM 81
+R+ VTG G+I SH +L GH +I D N + E + V+ +
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 82 DNCLKVTKGVDHVFNLAADMGGMGFI-QSNHSVIMY--NNTMISFNMLEASRISGVKRFF 138
+ L DH + G+ + +S + Y NN + ++ A R + VK F
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 139 YASSACIYPEFKQLETNVSLKESDAWP-AEPQDAYGLEKLASEELCKHYTK---DFGIEC 194
++S+A +Y + N + +++P PQ YG KL E++ K D+ I
Sbjct: 121 FSSAATVYGD------NPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIAL 174
Query: 195 RVGRFHNIYG--PFGTW----KGMEKAPAAFCRK-ALTSTDKFEMWG------DGLQTRS 241
R+ N G P G +G+ + + A+ D ++G DG R
Sbjct: 175 L--RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRD 232
Query: 242 FTFIDECVEG-VLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFED---KKLPIHHIPGP 297
+ + + +G V+ + K + V+I + N + ++V +F K + H P
Sbjct: 233 YIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRR 292
Query: 298 EG-VRGRNSDNTLIKEKLGWAPSMKLKDGLRITYFW 332
EG + +D + +L W + L + + T+ W
Sbjct: 293 EGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|1EQ2|A Chain A, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|B Chain B, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|C Chain C, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|D Chain D, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|E Chain E, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|F Chain F, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|G Chain G, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|H Chain H, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|I Chain I, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|J Chain J, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
Length = 310
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 118/289 (40%), Gaps = 33/289 (11%)
Query: 29 ISVTGAGGFIASHIARRLKSEG--HYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDN--- 83
I VTG GFI S+I + L +G ++ + K +LVDL + D
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFV--------NLVDLNIADYMDK 53
Query: 84 ---CLKVTKG-----VDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVK 135
+++ G V+ +F+ A + + +M NN S +L +
Sbjct: 54 EDFLIQIMAGEEFGDVEAIFHEGAXSSTT---EWDGKYMMDNNYQYSKELLHYCLEREIP 110
Query: 136 RFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECR 195
F YASSA Y + + +E + +P + YG K +E + + +
Sbjct: 111 -FLYASSAATYG--GRTSDFIESREYE----KPLNVYGYSKFLFDEYVRQILPEANSQIV 163
Query: 196 VGRFHNIYGPFGTWKGMEKAPAAFCRKALTSTDKFEMW-GDGLQTRSFTFIDECVEGVLR 254
R+ N+YGP KG + A L + + +++ G R F ++ + + L
Sbjct: 164 GFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLW 223
Query: 255 LTKSDFREPVNIGSDEMVSMNEMAEIVLSFEDKKLPIHHIPGPEGVRGR 303
++ N+G+ S +A+ L++ KK I +IP P+ ++GR
Sbjct: 224 FLENGVSGIFNLGTGRAESFQAVADATLAYH-KKGQIEYIPFPDKLKGR 271
>pdb|3RFX|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
pdb|3RFX|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
pdb|3RFX|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
Length = 267
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 76/191 (39%), Gaps = 25/191 (13%)
Query: 28 RISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKV 87
R+ VTGA G + + RL + +D + + C + L D ++ +
Sbjct: 5 RLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPAGPNEECVQCDLADANAVNAMVAG 64
Query: 88 TKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASS---AC 144
G+ H +GG+ ++ I+ N + +N+ EA+R G R +ASS
Sbjct: 65 CDGIVH-------LGGIS-VEKPFEQILQGNIIGLYNLYEAARAHGQPRIVFASSNHTIG 116
Query: 145 IYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRF----- 199
YP+ ++L +V PA P G+ K E L + Y FG E + R
Sbjct: 117 YYPQTERLGPDV--------PARPDGLAGVSKCFGENLARMYFDKFGQETALVRIGSCTP 168
Query: 200 -HNIYGPFGTW 209
N Y TW
Sbjct: 169 EPNNYRMLSTW 179
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 75/335 (22%), Positives = 133/335 (39%), Gaps = 36/335 (10%)
Query: 27 LRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEH-----MTEDMFCHEFHLVDLRVM 81
+R+ VTG G+I SH +L GH +I D N + E + V+ +
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 82 DNCLKVTKGVDHVFNLAADMGGMGFI-QSNHSVIMY--NNTMISFNMLEASRISGVKRFF 138
+ L DH + G+ + +S + Y NN + ++ A R + VK F
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 139 YASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTK---DFGIECR 195
++SSA +Y + ++ S PQ YG KL E++ K D+ I
Sbjct: 121 FSSSATVYGDQPKIPYVESFPT-----GTPQSPYGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 196 VGRFHNIYG--PFGTW----KGMEKAPAAFCRK-ALTSTDKFEMWG------DGLQTRSF 242
R+ N G P G +G+ + + A+ D ++G DG R +
Sbjct: 176 --RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDY 233
Query: 243 TFIDECVEG-VLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFED---KKLPIHHIPGPE 298
+ + +G V+ + K + V+I + N + ++V +F K + H P E
Sbjct: 234 IHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRRE 293
Query: 299 G-VRGRNSDNTLIKEKLGWAPSMKLKDGLRITYFW 332
G + +D + +L W + L + + T+ W
Sbjct: 294 GDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|B Chain B, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|C Chain C, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|D Chain D, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|E Chain E, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|F Chain F, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|G Chain G, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|H Chain H, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
Length = 346
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 77/333 (23%), Positives = 139/333 (41%), Gaps = 27/333 (8%)
Query: 21 YWPSEKLRISVTGAGGFIASHIAR-RLKS-EGHYIIASD---WKKNEHMTEDMFCH-EFH 74
Y+ S I VTG GFI S+ L+S E + II D + N + + + H ++
Sbjct: 19 YFQSNAXNILVTGGAGFIGSNFVHYXLQSYETYKIINFDALTYSGNLNNVKSIQDHPNYY 78
Query: 75 LV-----DLRVMDNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMI-SFNMLEA 128
V + ++++ +K + V + N AA+ I++ + Y+ +I + +LE
Sbjct: 79 FVKGEIQNGELLEHVIK-ERDVQVIVNFAAESHVDRSIEN--PIPFYDTNVIGTVTLLEL 135
Query: 129 SRISGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTK 188
+ + S+ +Y + + + ++ P P Y K +++ + Y K
Sbjct: 136 VKKYPHIKLVQVSTDEVYGSLGK-----TGRFTEETPLAPNSPYSSSKASADXIALAYYK 190
Query: 189 DFGIECRVGRFHNIYGPFGTWKGMEKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFI-DE 247
+ + V R N YGP+ + EK AL K ++GDGL R + + D
Sbjct: 191 TYQLPVIVTRCSNNYGPY---QYPEKLIPLXVTNALEG-KKLPLYGDGLNVRDWLHVTDH 246
Query: 248 CVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFEDK-KLPIHHIPGPEGVRGRNSD 306
C + L K E NIG + + E+ E +++ K K I ++ G R +
Sbjct: 247 CSAIDVVLHKGRVGEVYNIGGNNEKTNVEVVEQIITLLGKTKKDIEYVTDRLGHDRRYAI 306
Query: 307 NT-LIKEKLGWAPSMKLKDGLRITYFWIKEQIE 338
N K + W P + GL+ T W ++ E
Sbjct: 307 NAEKXKNEFDWEPKYTFEQGLQETVQWYEKNEE 339
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 75/336 (22%), Positives = 135/336 (40%), Gaps = 38/336 (11%)
Query: 27 LRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEH-----MTEDMFCHEFHLVDLRVM 81
+R+ VTG G+I SH +L GH +I D N + E + V+ +
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 82 DNCLKVTKGVDHVFNLAADMGGMGFI-QSNHSVIMY--NNTMISFNMLEASRISGVKRFF 138
+ L DH + G+ + +S + Y NN + ++ A R + VK F
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 139 YASSACIYPEFKQLETNVSLKESDAWP-AEPQDAYGLEKLASEELCKHYTK---DFGIEC 194
++S A +Y + N + +++P PQ YG KL E++ K D+ I
Sbjct: 121 FSSVATVYGD------NPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIAL 174
Query: 195 RVGRFHNIYG--PFGTW----KGMEKAPAAFCRK-ALTSTDKFEMWG------DGLQTRS 241
R+ N G P G +G+ + + A+ D ++G DG R
Sbjct: 175 L--RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRD 232
Query: 242 FTFIDECVEG-VLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFED---KKLPIHHIPGP 297
+ + + +G V+ + K + V+I + N + ++V +F K + H P
Sbjct: 233 YIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRR 292
Query: 298 EG-VRGRNSDNTLIKEKLGWAPSMKLKDGLRITYFW 332
EG + +D + +L W + L + + T+ W
Sbjct: 293 EGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 74/335 (22%), Positives = 133/335 (39%), Gaps = 36/335 (10%)
Query: 27 LRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEH-----MTEDMFCHEFHLVDLRVM 81
+R+ VTG G+I SH +L GH +I D N + E + V+ +
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 82 DNCLKVTKGVDHVFNLAADMGGMGFI-QSNHSVIMY--NNTMISFNMLEASRISGVKRFF 138
+ L DH + G+ + +S + Y NN + ++ A R + VK F
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 139 YASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTK---DFGIECR 195
++S+A +Y + ++ S PQ YG KL E++ K D+ I
Sbjct: 121 FSSAATVYGDQPKIPYVESFPT-----GTPQSPYGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 196 VGRFHNIYG--PFGTW----KGMEKAPAAFCRK-ALTSTDKFEMWG------DGLQTRSF 242
R+ N G P G +G+ + + A+ D ++G DG R +
Sbjct: 176 --RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDY 233
Query: 243 TFIDECVEG-VLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFED---KKLPIHHIPGPE 298
+ + +G V+ + K + V+I + N + ++V +F K + H P E
Sbjct: 234 IHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRRE 293
Query: 299 G-VRGRNSDNTLIKEKLGWAPSMKLKDGLRITYFW 332
G + +D + +L W + L + + T+ W
Sbjct: 294 GDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Galactose
Length = 338
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 74/336 (22%), Positives = 136/336 (40%), Gaps = 38/336 (11%)
Query: 27 LRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEH-----MTEDMFCHEFHLVDLRVM 81
+R+ VTG G+I SH +L GH +I D N + E + V+ +
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 82 DNCLKVTKGVDHVFNLAADMGGMGFI-QSNHSVIMY--NNTMISFNMLEASRISGVKRFF 138
+ L DH + G+ + +S + Y NN + ++ A R + VK F
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 139 YASSACIYPEFKQLETNVSLKESDAWP-AEPQDAYGLEKLASEELCKHYTK---DFGIEC 194
++S+A +Y + N + +++P PQ +G KL E++ K D+ I
Sbjct: 121 FSSAATVYGD------NPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQPDWSIAL 174
Query: 195 RVGRFHNIYG--PFGTW----KGMEKAPAAFCRK-ALTSTDKFEMWG------DGLQTRS 241
R+ N G P G +G+ + + A+ D ++G DG R
Sbjct: 175 L--RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRD 232
Query: 242 FTFIDECVEG-VLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFED---KKLPIHHIPGP 297
+ + + +G V+ + K + V+I + N + ++V +F K + H P
Sbjct: 233 YIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRR 292
Query: 298 EG-VRGRNSDNTLIKEKLGWAPSMKLKDGLRITYFW 332
EG + +D + +L W + L + + T+ W
Sbjct: 293 EGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 74/335 (22%), Positives = 133/335 (39%), Gaps = 36/335 (10%)
Query: 27 LRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEH-----MTEDMFCHEFHLVDLRVM 81
+R+ VTG G+I SH +L GH +I D N + E + V+ +
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 82 DNCLKVTKGVDHVFNLAADMGGMGFI-QSNHSVIMY--NNTMISFNMLEASRISGVKRFF 138
+ L DH + G+ + +S + Y NN + ++ A R + VK F
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 139 YASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTK---DFGIECR 195
++SSA +Y + ++ S PQ +G KL E++ K D+ I
Sbjct: 121 FSSSATVYGDQPKIPYVESFPT-----GTPQSPFGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 196 VGRFHNIYG--PFGTW----KGMEKAPAAFCRK-ALTSTDKFEMWG------DGLQTRSF 242
R+ N G P G +G+ + + A+ D ++G DG R +
Sbjct: 176 --RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDY 233
Query: 243 TFIDECVEG-VLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFED---KKLPIHHIPGPE 298
+ + +G V+ + K + V+I + N + ++V +F K + H P E
Sbjct: 234 IHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRRE 293
Query: 299 G-VRGRNSDNTLIKEKLGWAPSMKLKDGLRITYFW 332
G + +D + +L W + L + + T+ W
Sbjct: 294 GDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|2X6T|A Chain A, Agme Bound To Adp-B-Mannose
pdb|2X6T|B Chain B, Agme Bound To Adp-B-Mannose
pdb|2X6T|C Chain C, Agme Bound To Adp-B-Mannose
pdb|2X6T|D Chain D, Agme Bound To Adp-B-Mannose
pdb|2X6T|E Chain E, Agme Bound To Adp-B-Mannose
pdb|2X6T|F Chain F, Agme Bound To Adp-B-Mannose
pdb|2X6T|G Chain G, Agme Bound To Adp-B-Mannose
pdb|2X6T|H Chain H, Agme Bound To Adp-B-Mannose
pdb|2X6T|I Chain I, Agme Bound To Adp-B-Mannose
pdb|2X6T|J Chain J, Agme Bound To Adp-B-Mannose
pdb|2X86|A Chain A, Agme Bound To Adp-b-mannose
pdb|2X86|B Chain B, Agme Bound To Adp-b-mannose
pdb|2X86|C Chain C, Agme Bound To Adp-b-mannose
pdb|2X86|D Chain D, Agme Bound To Adp-b-mannose
pdb|2X86|E Chain E, Agme Bound To Adp-b-mannose
pdb|2X86|F Chain F, Agme Bound To Adp-b-mannose
pdb|2X86|G Chain G, Agme Bound To Adp-b-mannose
pdb|2X86|H Chain H, Agme Bound To Adp-b-mannose
pdb|2X86|I Chain I, Agme Bound To Adp-b-mannose
pdb|2X86|J Chain J, Agme Bound To Adp-b-mannose
pdb|2X86|K Chain K, Agme Bound To Adp-b-mannose
pdb|2X86|L Chain L, Agme Bound To Adp-b-mannose
pdb|2X86|M Chain M, Agme Bound To Adp-b-mannose
pdb|2X86|N Chain N, Agme Bound To Adp-b-mannose
pdb|2X86|O Chain O, Agme Bound To Adp-b-mannose
pdb|2X86|P Chain P, Agme Bound To Adp-b-mannose
pdb|2X86|Q Chain Q, Agme Bound To Adp-b-mannose
pdb|2X86|R Chain R, Agme Bound To Adp-b-mannose
pdb|2X86|S Chain S, Agme Bound To Adp-b-mannose
pdb|2X86|T Chain T, Agme Bound To Adp-b-mannose
Length = 357
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 64/289 (22%), Positives = 118/289 (40%), Gaps = 33/289 (11%)
Query: 29 ISVTGAGGFIASHIARRLKSEG--HYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDN--- 83
I VTG GFI S+I + L +G ++ + K +LVDL + D
Sbjct: 49 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFV--------NLVDLNIADYMDK 100
Query: 84 ---CLKVTKG-----VDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVK 135
+++ G V+ +F+ A + + +M NN S +L +
Sbjct: 101 EDFLIQIMAGEEFGDVEAIFHEGA---CSSTTEWDGKYMMDNNYQYSKELLHYCLEREIP 157
Query: 136 RFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECR 195
F YASSA Y + + +E + +P + +G K +E + + +
Sbjct: 158 -FLYASSAATYG--GRTSDFIESREYE----KPLNVFGYSKFLFDEYVRQILPEANSQIV 210
Query: 196 VGRFHNIYGPFGTWKGMEKAPAAFCRKALTSTDKFEMW-GDGLQTRSFTFIDECVEGVLR 254
R+ N+YGP KG + A L + + +++ G R F ++ + + L
Sbjct: 211 GFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLW 270
Query: 255 LTKSDFREPVNIGSDEMVSMNEMAEIVLSFEDKKLPIHHIPGPEGVRGR 303
++ N+G+ S +A+ L++ KK I +IP P+ ++GR
Sbjct: 271 FLENGVSGIFNLGTGRAESFQAVADATLAYH-KKGQIEYIPFPDKLKGR 318
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Glucose
Length = 338
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 73/335 (21%), Positives = 133/335 (39%), Gaps = 36/335 (10%)
Query: 27 LRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEH-----MTEDMFCHEFHLVDLRVM 81
+R+ VTG G+I SH +L GH +I D N + E + V+ +
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 82 DNCLKVTKGVDHVFNLAADMGGMGFI-QSNHSVIMY--NNTMISFNMLEASRISGVKRFF 138
+ L DH + G+ + +S + Y NN + ++ A R + VK F
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 139 YASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTK---DFGIECR 195
++S+A +Y + ++ S PQ +G KL E++ K D+ I
Sbjct: 121 FSSAATVYGDQPKIPYVESFPT-----GTPQSPFGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 196 VGRFHNIYG--PFGTW----KGMEKAPAAFCRK-ALTSTDKFEMWG------DGLQTRSF 242
R+ N G P G +G+ + + A+ D ++G DG R +
Sbjct: 176 --RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDY 233
Query: 243 TFIDECVEG-VLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFED---KKLPIHHIPGPE 298
+ + +G V+ + K + V+I + N + ++V +F K + H P E
Sbjct: 234 IHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRRE 293
Query: 299 G-VRGRNSDNTLIKEKLGWAPSMKLKDGLRITYFW 332
G + +D + +L W + L + + T+ W
Sbjct: 294 GDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
>pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|C Chain C, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|D Chain D, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1KEU|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEU|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEW|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
pdb|1KEW|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
Length = 361
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 76/350 (21%), Positives = 146/350 (41%), Gaps = 61/350 (17%)
Query: 27 LRISVTGAGGFIASHIARRL-KSEGHYIIASD---WKKN-EHMTEDMFCHEFHLVDLRVM 81
++I +TG GFI S + R + K+ ++ D + N E +++ + ++ +
Sbjct: 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADIC 60
Query: 82 DNCLKVTK-----GVDHVFNLAAD-------MGGMGFIQSNHSVIMYNNTMISFNMLEAS 129
D+ ++T+ D V +LAA+ G FI++N + ++ +LE +
Sbjct: 61 DSA-EITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETN--------IVGTYALLEVA 111
Query: 130 RI---------SGVKRFFYASSACIY---PEFKQLETNVSL---KESDAWPAEPQDAYGL 174
R RF + S+ +Y P ++E +V+L E+ A+ P Y
Sbjct: 112 RKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAY--APSSPYSA 169
Query: 175 EKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGMEKAPAAFCRKALTSTDKFEMWG 234
K +S+ L + + + +G+ V N YGP+ EK AL ++G
Sbjct: 170 SKASSDHLVRAWRRTYGLPTIVTNCSNNYGPY---HFPEKLIPLVILNALEG-KPLPIYG 225
Query: 235 DGLQTRSFTFIDECVEGV-LRLTKSDFREPVNIGS-------DEMVS----MNEMAEIVL 282
G Q R + ++++ + + +T+ E NIG D + + ++E+
Sbjct: 226 KGDQIRDWLYVEDHARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKAT 285
Query: 283 SFEDKKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPSMKLKDGLRITYFW 332
S+ ++ + PG + R D I +LGW P + G+R T W
Sbjct: 286 SYREQITYVADRPGHD--RRYAIDAGKISRELGWKPLETFESGIRKTVEW 333
>pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|B Chain B, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|C Chain C, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|D Chain D, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
Length = 347
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 80/344 (23%), Positives = 146/344 (42%), Gaps = 38/344 (11%)
Query: 28 RISVTGAGGFIASHIARRLKSEGHYIIASD------WKKNEHMTEDMFCHEFHLVDLRVM 81
++ +TG GF+ S++A S+G +I D N H + EF D+R
Sbjct: 3 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNK 62
Query: 82 DNCLK-VTKGV-DHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASR-ISGVKRFF 138
++ + +TK + D F+LA + I N + N + N+LEA R +
Sbjct: 63 NDVTRLITKYMPDSCFHLAGQVAMTTSID-NPCMDFEINVGGTLNLLEAVRQYNSNCNII 121
Query: 139 YASSACIYPEFKQLETN------VSLKESDAWPAEPQ----DAYGLEKLASEELCKHYTK 188
Y+S+ +Y + +Q + N + + + + Q YG K A+++ Y +
Sbjct: 122 YSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYAR 181
Query: 189 DFGIECRVGRFHNIYG--PFGTWKGMEKAPAAFCRKALTSTD----KFEMWGDGLQTRSF 242
FG+ V R ++YG F T+ + FC+KA+ + F + G+G Q R
Sbjct: 182 IFGLNTVVFRHSSMYGGRQFATYD--QGWVGWFCQKAVEIKNGINKPFTISGNGKQVRDV 239
Query: 243 TFIDECVEGVLRLTK----SDFR-EPVNIGSD--EMVSMNEMAEIVLSFEDKKLPIHHIP 295
++ + L T S R NIG +S+ E+ +++ + + + ++P
Sbjct: 240 LHAEDMIS--LYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLP 297
Query: 296 GPEG-VRGRNSDNTLIKEKLGWAPSMKLKDGLRITYFWIKEQIE 338
E R +D I + W+P + KDG++ Y W +E
Sbjct: 298 VRESDQRVFVADIKKITNAIDWSPKVSAKDGVQKMYDWTSSILE 341
>pdb|3A1N|A Chain A, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A1N|B Chain B, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A4V|A Chain A, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A4V|B Chain B, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
Length = 317
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 86/180 (47%), Gaps = 20/180 (11%)
Query: 29 ISVTGAGGFIASHIARRL--KSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLK 86
I VTG+ G I + + L K +IASD + D +F +D+ D +
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVIASDI-----VQRDTGGIKFITLDVSNRDEIDR 56
Query: 87 VTK--GVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSAC 144
+ +D +F+LA + G + + ++ N ++N+LEA++ V++ S+
Sbjct: 57 AVEKYSIDAIFHLAGILSAKG--EKDPALAYKVNMNGTYNILEAAKQHRVEKVVIPSTIG 114
Query: 145 IY-PEF-KQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNI 202
++ PE K ++++ P+ YG+ K+A+E L ++Y + FG++ R R+ I
Sbjct: 115 VFGPETPKNKVPSITI-------TRPRTMYGVTKIAAELLGQYYYEKFGLDVRSLRYPGI 167
>pdb|4B8W|A Chain A, Crystal Structure Of Human Gdp-L-Fucose Synthase With
Bound Nadp And Gdp, Tetragonal Crystal Form
pdb|4B8W|B Chain B, Crystal Structure Of Human Gdp-L-Fucose Synthase With
Bound Nadp And Gdp, Tetragonal Crystal Form
Length = 319
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/277 (21%), Positives = 119/277 (42%), Gaps = 33/277 (11%)
Query: 25 EKLRISVTGAGGFIASHIARRLKSEGHYIIASDW----KKNEHMTEDMFCHEFHLVDLRV 80
+ +RI VTG G + I +++ ++G + DW K+ +T+ R
Sbjct: 5 QSMRILVTGGSGLVGKAI-QKVVADGAGLPGEDWVFVSSKDADLTD--------TAQTRA 55
Query: 81 MDNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMY-NNTMISFNMLEASRISGVKRFFY 139
+ ++ T HV +LAA +GG+ F +++ + N ++ N+L ++ G ++
Sbjct: 56 LFEKVQPT----HVIHLAAMVGGL-FRNIKYNLDFWRKNVHMNDNVLHSAFEVGARKVVS 110
Query: 140 ASSACIYPEFKQLETNVSLKESDAWPAEPQDA---YGLEKLASEELCKHYTKDFGIECRV 196
S CI+P+ +T + E+ P ++ Y K + + Y + +G
Sbjct: 111 CLSTCIFPD----KTTYPIDETMIHNGPPHNSNFGYSYAKRMIDVQNRAYFQQYGCTFTA 166
Query: 197 GRFHNIYGPFGTW--KGMEKAPAAFCRKAL--TSTDKFEMWGDGLQTRSFTF-IDECVEG 251
N++GP + + P + L +S +WG G R F + +D
Sbjct: 167 VIPTNVFGPHDNFNIEDGHVLPGLIHKVHLAKSSGSALTVWGTGNPRRQFIYSLDLAQLF 226
Query: 252 VLRLTKSDFREPV--NIGSDEMVSMNEMAEIVLSFED 286
+ L + + EP+ ++G ++ VS+ E AE V+ D
Sbjct: 227 IWVLREYNEVEPIILSVGEEDEVSIKEAAEAVVEAMD 263
>pdb|4B8Z|A Chain A, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|B Chain B, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|C Chain C, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|D Chain D, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
Length = 320
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/277 (21%), Positives = 119/277 (42%), Gaps = 33/277 (11%)
Query: 25 EKLRISVTGAGGFIASHIARRLKSEGHYIIASDW----KKNEHMTEDMFCHEFHLVDLRV 80
+ +RI VTG G + I +++ ++G + DW K+ +T+ R
Sbjct: 6 QSMRILVTGGSGLVGKAI-QKVVADGAGLPGEDWVFVSSKDADLTD--------TAQTRA 56
Query: 81 MDNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMY-NNTMISFNMLEASRISGVKRFFY 139
+ ++ T HV +LAA +GG+ F +++ + N ++ N+L ++ G ++
Sbjct: 57 LFEKVQPT----HVIHLAAMVGGL-FRNIKYNLDFWRKNVHMNDNVLHSAFEVGARKVVS 111
Query: 140 ASSACIYPEFKQLETNVSLKESDAWPAEPQDA---YGLEKLASEELCKHYTKDFGIECRV 196
S CI+P+ +T + E+ P ++ Y K + + Y + +G
Sbjct: 112 CLSTCIFPD----KTTYPIDETMIHNGPPHNSNFGYSYAKRMIDVQNRAYFQQYGCTFTA 167
Query: 197 GRFHNIYGPFGTW--KGMEKAPAAFCRKAL--TSTDKFEMWGDGLQTRSFTF-IDECVEG 251
N++GP + + P + L +S +WG G R F + +D
Sbjct: 168 VIPTNVFGPHDNFNIEDGHVLPGLIHKVHLAKSSGSALTVWGTGNPRRQFIYSLDLAQLF 227
Query: 252 VLRLTKSDFREPV--NIGSDEMVSMNEMAEIVLSFED 286
+ L + + EP+ ++G ++ VS+ E AE V+ D
Sbjct: 228 IWVLREYNEVEPIILSVGEEDEVSIKEAAEAVVEAMD 264
>pdb|2PK3|A Chain A, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
pdb|2PK3|B Chain B, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
Length = 321
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/310 (21%), Positives = 127/310 (40%), Gaps = 21/310 (6%)
Query: 27 LRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDN--C 84
+R +TG GF+ ++A L + + + + NE ++ ++ L +MD+
Sbjct: 13 MRALITGVAGFVGKYLANHLTEQNVEVFGTS-RNNEAKLPNV-----EMISLDIMDSQRV 66
Query: 85 LKVTKGV--DHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVK-RFFYAS 141
KV + D++F+LAA + N N + ++L+A R S + R
Sbjct: 67 KKVISDIKPDYIFHLAAK-SSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIG 125
Query: 142 SACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHN 201
S+ Y E+ VS +E+ P P YG+ K + L + Y K +G++ R N
Sbjct: 126 SSEEYGMILPEESPVS-EENQLRPMSP---YGVSKASVGMLARQYVKAYGMDIIHTRTFN 181
Query: 202 IYGPFGTWKGMEKAPA-AFCRKALTSTDKFEMWGDGLQTRSFTFIDECVEGVLRLTKSDF 260
GP + + + A + + G+ R FT + + V+ L++
Sbjct: 182 HIGPGQSLGFVTQDFAKQIVDIEMEKQEPIIKVGNLEAVRDFTDVRDIVQAYWLLSQYGK 241
Query: 261 REPV-NIGSDEMVSMNEMAEIVLSFEDKKLPIHHIP---GPEGVRGRNSDNTLIKEKLGW 316
V N+ S + ++ +++L+ + K+ P P V N +K+ GW
Sbjct: 242 TGDVYNVCSGIGTRIQDVLDLLLAMANVKIDTELNPLQLRPSEVPTLIGSNKRLKDSTGW 301
Query: 317 APSMKLKDGL 326
P + L+ L
Sbjct: 302 KPRIPLEKSL 311
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 73/166 (43%), Gaps = 18/166 (10%)
Query: 29 ISVTGAGGFIASHIARRLKSEGHYIIASDWKKN---------EHMTEDMF-CHEFHLVDL 78
+ VTG G+I SH L G+ + +D N E +T+ +E L D
Sbjct: 14 VLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDR 73
Query: 79 RVMDNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMY--NNTMISFNMLEASRISGVKR 136
+ ++ K K +D V + A + +G +S + Y NN + + +LE + V +
Sbjct: 74 KGLEKVFKEYK-IDSVIHFAG-LKAVG--ESTQIPLRYYHNNILGTVVLLELMQQYNVSK 129
Query: 137 FFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEEL 182
F ++SSA +Y + + + + E P P + YG K A E +
Sbjct: 130 FVFSSSATVYGDATRFPNMIPIPEE--CPLGPTNPYGHTKYAIENI 173
>pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase
(decarboxylase) Domain, S433a Mutant
Length = 358
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 66/300 (22%), Positives = 120/300 (40%), Gaps = 37/300 (12%)
Query: 26 KLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLV--DLRVMDN 83
+ R+ + G GFI +H+ RL E HY + ++ ++ + FH V D+ +
Sbjct: 13 RTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSE 72
Query: 84 CLKV-TKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGV-----KRF 137
++ K D V L A + + ++ V + E RI KR
Sbjct: 73 WIEYHVKKCDVVLPLVAIATPIEYTRNPLRV-------FELDFEENLRIIRYCVKYRKRI 125
Query: 138 FYASSACIY-----PEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGI 192
+ S+A +Y F + +N+ + + +P+ Y + K + + Y + G+
Sbjct: 126 IFPSTAEVYGMCSDKYFDEDHSNLIVGPVN----KPRWIYSVSKQLLDRVIWAYGEKEGL 181
Query: 193 ECRVGRFHNIYGPFGTWKGMEKAPAAFCRKA------LTSTDKFEMWGDGLQTRSFTFID 246
+ + R N GP + A R L ++ G Q R FT I
Sbjct: 182 QFTLFRPFNWMGP--RLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIR 239
Query: 247 ECVEGVLRLTKSDFR----EPVNIGSDEM-VSMNEMAEIVLSFEDKKLPIHHIPGPEGVR 301
+ +E + R+ ++ E +NIG+ E S+ E+ E++L+ +K HH P G R
Sbjct: 240 DGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFR 299
>pdb|3A9W|A Chain A, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A9W|B Chain B, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3AJR|A Chain A, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
pdb|3AJR|B Chain B, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
Length = 317
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 86/180 (47%), Gaps = 20/180 (11%)
Query: 29 ISVTGAGGFIASHIARRL--KSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLK 86
I VTG+ G I + + L K +IASD + D +F +D+ D +
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVIASDI-----VQRDTGGIKFITLDVSNRDEIDR 56
Query: 87 VTK--GVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSAC 144
+ +D +F+LA + G + + ++ N ++N+LEA++ V++ S+
Sbjct: 57 AVEKYSIDAIFHLAGILSAKG--EKDPALAYKVNMNGTYNILEAAKQHRVEKVVIPSTIG 114
Query: 145 IY-PEF-KQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNI 202
++ PE K ++++ P+ +G+ K+A+E L ++Y + FG++ R R+ I
Sbjct: 115 VFGPETPKNKVPSITI-------TRPRTMFGVTKIAAELLGQYYYEKFGLDVRSLRYPGI 167
>pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|C Chain C, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
Length = 333
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 71/326 (21%), Positives = 130/326 (39%), Gaps = 56/326 (17%)
Query: 28 RISVTGAGGFIASHIARRLKSEGHYIIASD---WKKNEHMTEDMFCHEFHLVDLRVMDNC 84
++ +TG G I SHIA L G ++ D + EH+ + V+ + D+
Sbjct: 23 KVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDHP---NLTFVEGSIADHA 79
Query: 85 LKVTKGVDHVFNLAADMGGMGFIQSNHSVI----MYNNTMISF----NMLEASRISGVKR 136
L V L D+ + + S YN+T+ + N+++A++ + V R
Sbjct: 80 L--------VNQLIGDLQPDAVVHTAASYKDPDDWYNDTLTNCVGGSNVVQAAKKNNVGR 131
Query: 137 FFYASSACIYPEFKQLETNVSLKESDAWPAEPQD-AYGLEKLASEELCKHYTKDFGIECR 195
F Y +A Y K ++ V L P P + +Y + K A+E+ ++ DF + R
Sbjct: 132 FVYFQTALCY-GVKPIQQPVRLDH----PRNPANSSYAISKSANEDYLEYSGLDF-VTFR 185
Query: 196 VGRF---HNIYGPFGT-WKGMEKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECVEG 251
+ N+ GP ++ + + F KA R F F+ +
Sbjct: 186 LANVVGPRNVSGPLPIFFQRLSEGKKCFVTKA---------------RRDFVFVKDLARA 230
Query: 252 VLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFEDKKLPIHHIPGPEGVRGRNSDNTLIK 311
+R + S V++ E+ + V+ E LP + P PE +R D+
Sbjct: 231 TVRAVDGVGHGAYHFSSGTDVAIKELYDAVV--EAMALPSY--PEPE-IRELGPDDA--- 282
Query: 312 EKLGWAPSMKLKDGLRITYFWIKEQI 337
+ PS ++D +I + +KE +
Sbjct: 283 PSILLDPSRTIQDFGKIEFTPLKETV 308
>pdb|2BLL|A Chain A, Apo-Structure Of The C-Terminal Decarboxylase Domain Of
Arna
Length = 345
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 65/299 (21%), Positives = 120/299 (40%), Gaps = 37/299 (12%)
Query: 27 LRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLV--DLRVMDNC 84
+R+ + G GFI +H+ RL E HY + ++ ++ + FH V D+ +
Sbjct: 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEW 60
Query: 85 LKV-TKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGV-----KRFF 138
++ K D V L A + + ++ V + E RI KR
Sbjct: 61 IEYHVKKCDVVLPLVAIATPIEYTRNPLRV-------FELDFEENLRIIRYCVKYRKRII 113
Query: 139 YASSACIY-----PEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIE 193
+ S++ +Y F + +N+ + + +P+ Y + K + + Y + G++
Sbjct: 114 FPSTSEVYGMCSDKYFDEDHSNLIVGPVN----KPRWIYSVSKQLLDRVIWAYGEKEGLQ 169
Query: 194 CRVGRFHNIYGPFGTWKGMEKAPAAFCRKA------LTSTDKFEMWGDGLQTRSFTFIDE 247
+ R N GP + A R L ++ G Q R FT I +
Sbjct: 170 FTLFRPFNWMGP--RLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRD 227
Query: 248 CVEGVLRLTKSDFR----EPVNIGSDEM-VSMNEMAEIVLSFEDKKLPIHHIPGPEGVR 301
+E + R+ ++ E +NIG+ E S+ E+ E++L+ +K HH P G R
Sbjct: 228 GIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFR 286
>pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619y Mutant
Length = 358
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 65/300 (21%), Positives = 120/300 (40%), Gaps = 37/300 (12%)
Query: 26 KLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLV--DLRVMDN 83
+ R+ + G GFI +H+ RL E HY + ++ ++ + FH V D+ +
Sbjct: 13 RTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSE 72
Query: 84 CLKV-TKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGV-----KRF 137
++ K D V L A + + ++ V + E RI KR
Sbjct: 73 WIEYHVKKCDVVLPLVAIATPIEYTRNPLRV-------FELDFEENLRIIRYCVKYRKRI 125
Query: 138 FYASSACIY-----PEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGI 192
+ S++ +Y F + +N+ + + +P+ Y + K + + Y + G+
Sbjct: 126 IFPSTSEVYGMCSDKYFDEDHSNLIVGPVN----KPRWIYSVSKQLLDRVIWAYGEKEGL 181
Query: 193 ECRVGRFHNIYGPFGTWKGMEKAPAAFCRKA------LTSTDKFEMWGDGLQTRSFTFID 246
+ + R N GP + A R L ++ G Q R FT I
Sbjct: 182 QFTLFRPFNWMGP--RLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIR 239
Query: 247 ECVEGVLRLTKSDFR----EPVNIGSDEM-VSMNEMAEIVLSFEDKKLPIHHIPGPEGVR 301
+ +E + R+ ++ E +NIG+ E S+ E+ E++L+ +K HH P G R
Sbjct: 240 DGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFR 299
>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna
pdb|1Z7E|B Chain B, Crystal Structure Of Full Length Arna
pdb|1Z7E|C Chain C, Crystal Structure Of Full Length Arna
pdb|1Z7E|D Chain D, Crystal Structure Of Full Length Arna
pdb|1Z7E|E Chain E, Crystal Structure Of Full Length Arna
pdb|1Z7E|F Chain F, Crystal Structure Of Full Length Arna
Length = 660
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 65/300 (21%), Positives = 120/300 (40%), Gaps = 37/300 (12%)
Query: 26 KLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLV--DLRVMDN 83
+ R+ + G GFI +H+ RL E HY + ++ ++ + FH V D+ +
Sbjct: 315 RTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSE 374
Query: 84 CLKV-TKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGV-----KRF 137
++ K D V L A + + ++ V + E RI KR
Sbjct: 375 WIEYHVKKCDVVLPLVAIATPIEYTRNPLRV-------FELDFEENLRIIRYCVKYRKRI 427
Query: 138 FYASSACIY-----PEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGI 192
+ S++ +Y F + +N+ + + +P+ Y + K + + Y + G+
Sbjct: 428 IFPSTSEVYGMCSDKYFDEDHSNLIVGPVN----KPRWIYSVSKQLLDRVIWAYGEKEGL 483
Query: 193 ECRVGRFHNIYGPFGTWKGMEKAPAAFCRKA------LTSTDKFEMWGDGLQTRSFTFID 246
+ + R N GP + A R L ++ G Q R FT I
Sbjct: 484 QFTLFRPFNWMGP--RLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIR 541
Query: 247 ECVEGVLRLTKSDFR----EPVNIGSDEM-VSMNEMAEIVLSFEDKKLPIHHIPGPEGVR 301
+ +E + R+ ++ E +NIG+ E S+ E+ E++L+ +K HH P G R
Sbjct: 542 DGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFR 601
>pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619e Mutant
Length = 358
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 65/300 (21%), Positives = 120/300 (40%), Gaps = 37/300 (12%)
Query: 26 KLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLV--DLRVMDN 83
+ R+ + G GFI +H+ RL E HY + ++ ++ + FH V D+ +
Sbjct: 13 RTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSE 72
Query: 84 CLKV-TKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGV-----KRF 137
++ K D V L A + + ++ V + E RI KR
Sbjct: 73 WIEYHVKKCDVVLPLVAIATPIEYTRNPLRV-------FELDFEENLRIIRYCVKYRKRI 125
Query: 138 FYASSACIY-----PEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGI 192
+ S++ +Y F + +N+ + + +P+ Y + K + + Y + G+
Sbjct: 126 IFPSTSEVYGMCSDKYFDEDHSNLIVGPVN----KPRWIYSVSKQLLDRVIWAYGEKEGL 181
Query: 193 ECRVGRFHNIYGPFGTWKGMEKAPAAFCRKA------LTSTDKFEMWGDGLQTRSFTFID 246
+ + R N GP + A R L ++ G Q R FT I
Sbjct: 182 QFTLFRPFNWMGP--RLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIR 239
Query: 247 ECVEGVLRLTKSDFR----EPVNIGSDEM-VSMNEMAEIVLSFEDKKLPIHHIPGPEGVR 301
+ +E + R+ ++ E +NIG+ E S+ E+ E++L+ +K HH P G R
Sbjct: 240 DGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFR 299
>pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase)
Domain, R619m Mutant
Length = 358
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 65/300 (21%), Positives = 120/300 (40%), Gaps = 37/300 (12%)
Query: 26 KLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLV--DLRVMDN 83
+ R+ + G GFI +H+ RL E HY + ++ ++ + FH V D+ +
Sbjct: 13 RTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSE 72
Query: 84 CLKV-TKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGV-----KRF 137
++ K D V L A + + ++ V + E RI KR
Sbjct: 73 WIEYHVKKCDVVLPLVAIATPIEYTRNPLRV-------FELDFEENLRIIRYCVKYRKRI 125
Query: 138 FYASSACIY-----PEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGI 192
+ S++ +Y F + +N+ + + +P+ Y + K + + Y + G+
Sbjct: 126 IFPSTSEVYGMCSDKYFDEDHSNLIVGPVN----KPRWIYSVSKQLLDRVIWAYGEKEGL 181
Query: 193 ECRVGRFHNIYGPFGTWKGMEKAPAAFCRKA------LTSTDKFEMWGDGLQTRSFTFID 246
+ + R N GP + A R L ++ G Q R FT I
Sbjct: 182 QFTLFRPFNWMGP--RLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIR 239
Query: 247 ECVEGVLRLTKSDFR----EPVNIGSDEM-VSMNEMAEIVLSFEDKKLPIHHIPGPEGVR 301
+ +E + R+ ++ E +NIG+ E S+ E+ E++L+ +K HH P G R
Sbjct: 240 DGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFR 299
>pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase
Domain
Length = 358
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 65/300 (21%), Positives = 120/300 (40%), Gaps = 37/300 (12%)
Query: 26 KLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLV--DLRVMDN 83
+ R+ + G GFI +H+ RL E HY + ++ ++ + FH V D+ +
Sbjct: 13 RTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSE 72
Query: 84 CLKV-TKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGV-----KRF 137
++ K D V L A + + ++ V + E RI KR
Sbjct: 73 WIEYHVKKCDVVLPLVAIATPIEYTRNPLRV-------FELDFEENLRIIRYCVKYRKRI 125
Query: 138 FYASSACIY-----PEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGI 192
+ S++ +Y F + +N+ + + +P+ Y + K + + Y + G+
Sbjct: 126 IFPSTSEVYGMCSDKYFDEDHSNLIVGPVN----KPRWIYSVSKQLLDRVIWAYGEKEGL 181
Query: 193 ECRVGRFHNIYGPFGTWKGMEKAPAAFCRKA------LTSTDKFEMWGDGLQTRSFTFID 246
+ + R N GP + A R L ++ G Q R FT I
Sbjct: 182 QFTLFRPFNWMGP--RLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIR 239
Query: 247 ECVEGVLRLTKSDFR----EPVNIGSDEM-VSMNEMAEIVLSFEDKKLPIHHIPGPEGVR 301
+ +E + R+ ++ E +NIG+ E S+ E+ E++L+ +K HH P G R
Sbjct: 240 DGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFR 299
>pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli
pdb|1BXK|B Chain B, Dtdp-Glucose 4,6-Dehydratase From E. Coli
Length = 355
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 76/369 (20%), Positives = 137/369 (37%), Gaps = 61/369 (16%)
Query: 28 RISVTGAGGFIASHIARRLKSE-GHYIIASD---WKKNEHMTEDMFCHE---FHLVDLRV 80
+I +TG GFI S + R + +E ++ D + N + E F VD+
Sbjct: 3 KILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICD 62
Query: 81 MDNCLKV--TKGVDHVFNLAADM-------GGMGFIQSNHSVIMYNNTMISFNMLEASRI 131
+V D V +LAA+ G FI++N + ++ +LEA+R
Sbjct: 63 RAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETN--------IVGTYTLLEAARA 114
Query: 132 ---------SGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEEL 182
RF + S+ +Y + + + + P P Y K +S+ L
Sbjct: 115 YWNALTEDKKSAFRFHHISTDEVYGDLHSTDDFFT----ETTPYAPSSPYSASKASSDHL 170
Query: 183 CKHYTKDFGIECRVGRFHNIYGPFGTWKGMEKAPAAFCRKALTSTDKFEMWGDGLQTRSF 242
+ + + +G+ + N YGP+ EK AL ++G+G Q R +
Sbjct: 171 VRAWLRTYGLPTLITNCSNNYGPY---HFPEKLIPLMILNALAG-KSLPVYGNGQQIRDW 226
Query: 243 TFIDECVEGVLRL-TKSDFREPVNIGSDEMVSMNEMAEIVLSFEDKKLP----------- 290
++++ + + T E NIG ++ E + ++ P
Sbjct: 227 LYVEDHARALYCVATTGKVGETYNIGGHNERKNLDVVETICELLEELAPNKPHGVAHYRD 286
Query: 291 -IHHIPGPEGVRGRNS-DNTLIKEKLGWAPSMKLKDGLRITYFWIK------EQIEKEKT 342
I + G R + D + I +LG P + G+R T W +Q++
Sbjct: 287 LITFVADRPGHDLRYAIDASKIARELGCVPQETFESGMRKTVQWYLANESWWKQVQDGSY 346
Query: 343 QGIDLSVYG 351
QG L + G
Sbjct: 347 QGERLGLKG 355
>pdb|2YY7|A Chain A, Crystal Structure Of Thermolabile L-Threonine
Dehydrogenase From Flavobacterium Frigidimaris Kuc-1
pdb|2YY7|B Chain B, Crystal Structure Of Thermolabile L-Threonine
Dehydrogenase From Flavobacterium Frigidimaris Kuc-1
Length = 312
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/274 (20%), Positives = 114/274 (41%), Gaps = 22/274 (8%)
Query: 28 RISVTGAGGFIASHIARRLKSE--GHYIIASDWKK-NEHMTEDMFCHEFHLVDLRVMDNC 84
+I + GA G I + + ++L+ +IASD +K N + + +D +++
Sbjct: 4 KILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTDVVNSGPFEVVNALDFNQIEHL 63
Query: 85 LKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSAC 144
++V K D ++ +AA + + N + N F++L ++ +K+ F+ SS
Sbjct: 64 VEVHKITD-IYLMAALLSATA--EKNPAFAWDLNMNSLFHVLNLAKAKKIKKIFWPSSIA 120
Query: 145 IYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYG 204
++ E EP YG+ K A E C++Y +G++ R R+ +
Sbjct: 121 VFGPTTPKENTPQYTI-----MEPSTVYGISKQAGERWCEYYHNIYGVDVRSIRYPGLIS 175
Query: 205 ---PFGTWKGMEKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFR 261
P G G KA+ + K+E + ++D+ ++ + + K+
Sbjct: 176 WSTPPG--GGTTDYAVDIFYKAI-ADKKYECFLSSETKMPMMYMDDAIDATINIMKAPV- 231
Query: 262 EPVNIGSDEMVSMNEMAEIVLSFEDKKLPIHHIP 295
E + I S ++ ++ E KK HIP
Sbjct: 232 EKIKIHSSYNLAAMSFTPTEIANEIKK----HIP 261
>pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|B Chain B, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|C Chain C, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|D Chain D, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|2CNB|A Chain A, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|B Chain B, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|C Chain C, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|D Chain D, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
Length = 397
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 87/212 (41%), Gaps = 41/212 (19%)
Query: 27 LRISVTGAGGFIASHIARRL-KSEGHYIIASD-----WKKNEHM-TEDMFCHEFHLVD-- 77
+R+ V G G+I SH R L + H ++ D K++H+ T + + D
Sbjct: 3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGP 62
Query: 78 ----------LRVMD-------NCLKVTKG-VDHVFNLAADMGGMGFIQSNHSV---IMY 116
L V D N + G +D V ++ A F+ SV + Y
Sbjct: 63 KPPWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCA------FLAVGESVRDPLKY 116
Query: 117 --NNTMISFNMLEASRISGVKRFFYASSACIY--PEFKQLETNVSLKESDAWPAEPQDAY 172
NN + +L+A + + ++SSA I+ P + TN + +A + P+ Y
Sbjct: 117 YDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKS-PESPY 175
Query: 173 GLEKLASEELCKHYTKDFGIECRVGRFHNIYG 204
G KL +E + + + +GI+ R+ N G
Sbjct: 176 GESKLIAERMIRDCAEAYGIKGICLRYFNACG 207
>pdb|1RPN|A Chain A, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|B Chain B, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|C Chain C, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|D Chain D, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
Length = 335
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 73/324 (22%), Positives = 132/324 (40%), Gaps = 45/324 (13%)
Query: 31 VTGAGGFIASHIARRLKSEG---HYIIA-----SDWKKNEHMTEDMFCHEFHLVDLRVMD 82
VTG G +++A+ L +G H ++A + W+ E E +E D + D
Sbjct: 19 VTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEGDIQYE----DGDMAD 74
Query: 83 NCLKVTKGV-----DHVFNLAAD-MGGMGFIQSNHSVIMYNNTMISFNMLEASR-ISGVK 135
C V + V V+NLAA G + Q + ++ + + ++LEA R S
Sbjct: 75 AC-SVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVV--DGLGVTHLLEAIRQFSPET 131
Query: 136 RFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECR 195
RF+ AS++ ++ + + ++ + P P+ YG+ KL + +Y + FG+
Sbjct: 132 RFYQASTSEMFGLIQ------AERQDENTPFYPRSPYGVAKLYGHWITVNYRESFGLHAS 185
Query: 196 VGRFHNIYGPFGTWKGME----KAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECVEG 251
G N P +G+E K A R L + + G+ R + F + VE
Sbjct: 186 SGILFNHESPL---RGIEFVTRKVTDAVARIKLGKQQELRL-GNVDAKRDWGFAGDYVEA 241
Query: 252 VLRLTKSDFREPVNIGSDEMVSMNEMAEIV-----LSFED--KKLPIHHIPGPEGVRGRN 304
+ + + D + + + ++ +M +I L + D K P P V N
Sbjct: 242 MWLMLQQDKADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGN 301
Query: 305 SDNTLIKEKLGWAPSMKLKDGLRI 328
+ LGW P L + +R+
Sbjct: 302 PAKA--QRVLGWKPRTSLDELIRM 323
>pdb|1C8U|A Chain A, Crystal Structure Of The E.Coli Thioesterase Ii, A
Homologue Of The Human Nef-Binding Enzyme
pdb|1C8U|B Chain B, Crystal Structure Of The E.Coli Thioesterase Ii, A
Homologue Of The Human Nef-Binding Enzyme
Length = 285
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 55/157 (35%), Gaps = 31/157 (19%)
Query: 50 GHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTKGVDHVFNLAADMGGMGFIQS 109
G + + + E + E+ H FH LR D S
Sbjct: 36 GQVVGQALYAAKETVPEERLVHSFHSYFLRPGD--------------------------S 69
Query: 110 NHSVIMYNNTMISFNMLEASRISGV---KRFFYASSACIYPE--FKQLETNVSLKESDAW 164
+I T+ N A R++ + K FY +++ PE F+ +T S D
Sbjct: 70 KKPIIYDVETLRDGNSFSARRVAAIQNGKPIFYMTASFQAPEAGFEHQKTMPSAPAPDGL 129
Query: 165 PAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHN 201
P+E Q A L L L + D +E R FHN
Sbjct: 130 PSETQIAQSLAHLLPPVLKDKFICDRPLEVRPVEFHN 166
>pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
pdb|3ENK|B Chain B, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
Length = 341
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 69/298 (23%), Positives = 114/298 (38%), Gaps = 55/298 (18%)
Query: 24 SEKLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKN---------EHMTEDMFC-HEF 73
S K I VTG G+I SH A L + G+ ++ +D N E +T HE
Sbjct: 3 STKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHET 62
Query: 74 HLVDLRVMDNCLKVTKGVDHVFNLAADMGGMGFI-QSNHSVIMY--NNTMISFNMLEASR 130
+ D R + H A + + +S I Y NN ++L R
Sbjct: 63 DVSDERALARIFDA-----HPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMR 117
Query: 131 ISGVKRFFYASSACIY--PEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHY-T 187
VKR ++SSA +Y PE ++ + +P + YG KL +E++ +
Sbjct: 118 ERAVKRIVFSSSATVYGVPERSPID--------ETFPLSATNPYGQTKLMAEQILRDVEA 169
Query: 188 KDFGIECRVGRFHNIYGPFGTWKG--MEKAPAAF--------CRKALTSTDKFEMWG--- 234
D R+ N P G + + + PA + A+ +K ++G
Sbjct: 170 ADPSWRVATLRYFN---PVGAHESGLIGEDPAGIPNNLMPYVAQVAVGKLEKLRVFGSDY 226
Query: 235 ---DGLQTRSFTFIDECVEGVL----RLTKSDFREPVNIGSDEMVSMNEMAEIVLSFE 285
DG R + + + G + L + D VN+G+ S + E+V +FE
Sbjct: 227 PTPDGTGVRDYIHVVDLARGHIAALDALERRDASLTVNLGTGRGYS---VLEVVRAFE 281
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 55/129 (42%), Gaps = 11/129 (8%)
Query: 24 SEKLRISVTGAGGFIASHIARRLKSEGHYIIA-----SDWKKNEHMTEDMFCHEFHLV-- 76
S+ + VTGA GFI S + RL G+ + A ++ KK +H+ D+ E HL
Sbjct: 3 SQSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLL-DLPKAETHLTLW 61
Query: 77 --DLRVMDNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGV 134
DL + + KG VF++A M N + M+ M + V
Sbjct: 62 KADLADEGSFDEAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGI-MKSCAAAKTV 120
Query: 135 KRFFYASSA 143
+R + SSA
Sbjct: 121 RRLVFTSSA 129
>pdb|2ZKL|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling
Protein Capf From Staphylococcus Aureus
Length = 369
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 161 SDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTW--KGMEKAPAA 218
S + A + YG KL E+L + Y +++G + R+ N+ FG W A
Sbjct: 92 SSSIQATQDNPYGESKLQGEQLLREYAEEYGNTVYIYRWPNL---FGKWCKPNYNSVIAT 148
Query: 219 FCRKALTSTDKFEMWGDGLQTRSFTFIDECVEGVLR 254
FC K + ++ ++ ++ + ++D+ V + R
Sbjct: 149 FCYK-IARNEEIQVNDRNVEL-TLNYVDDIVAEIKR 182
>pdb|3ST7|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling
Protein Capf From Staphylococcus Aureus
pdb|3VHR|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling
Protein Capf From Staphylococcus Aureus In Space Group
C2221
Length = 369
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 161 SDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTW--KGMEKAPAA 218
S + A + YG KL E+L + Y +++G + R+ N+ FG W A
Sbjct: 92 SSSIQATQDNPYGESKLQGEQLLREYAEEYGNTVYIYRWPNL---FGKWCKPNYNSVIAT 148
Query: 219 FCRKALTSTDKFEMWGDGLQTRSFTFIDECVEGVLR 254
FC K + ++ ++ ++ + ++D+ V + R
Sbjct: 149 FCYK-IARNEEIQVNDRNVEL-TLNYVDDIVAEIKR 182
>pdb|2F6R|A Chain A, Crystal Structure Of Bifunctional Coenzyme A Synthase (coa
Synthase): (18044849) From Mus Musculus At 1.70 A
Resolution
Length = 281
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 20 PYWPSEKLRISVTGAGGFIASHIARRLKSEGHYIIASD 57
P PS + +TG G S +A+RLK+ G YII SD
Sbjct: 69 PELPSGLYVLGLTGISGSGKSSVAQRLKNLGAYIIDSD 106
>pdb|3SLG|A Chain A, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|B Chain B, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|C Chain C, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|D Chain D, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|E Chain E, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|F Chain F, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
Length = 372
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 51/114 (44%), Gaps = 23/114 (20%)
Query: 236 GLQTRSFTFIDECVEGVLRLTKS----------DFREPVNIGSDEMVSMNEMAEIVLSFE 285
G Q R+FT++D+ + ++++ ++ + P N S ++ N+M E+ F
Sbjct: 239 GSQKRAFTYVDDGISALMKIIENSNGVATGKIYNIGNPNNNFSVRELA-NKMLELAAEFP 297
Query: 286 D-----KKLPI-------HHIPGPEGVRGRNSDNTLIKEKLGWAPSMKLKDGLR 327
+ K++ + ++ G + V+ R ++LGWAP D LR
Sbjct: 298 EYADSAKRVKLVETTSGAYYGNGYQDVQNRVPKIENTMQELGWAPQFTFDDALR 351
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase
From Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase
From Sporobolomyces Salmonicolor
Length = 342
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 29 ISVTGAGGFIASHIARRLKSEGHYI 53
+ VTGA GF+ASH+ +L G+ +
Sbjct: 14 VLVTGANGFVASHVVEQLLEHGYKV 38
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 29 ISVTGAGGFIASHIARRLKSEGHYI 53
+ VTGA GF+ASH+ +L G+ +
Sbjct: 14 VLVTGANGFVASHVVEQLLEHGYKV 38
>pdb|1N7G|A Chain A, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|B Chain B, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|C Chain C, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|D Chain D, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7H|A Chain A, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
pdb|1N7H|B Chain B, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
Length = 381
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 56/292 (19%), Positives = 112/292 (38%), Gaps = 30/292 (10%)
Query: 68 MFCHEFHLVDLRVMDNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMIS---FN 124
M H L D + + V K D V+NLAA + + + Y +++
Sbjct: 85 MKLHYADLTDASSLRRWIDVIKP-DEVYNLAA----QSHVAVSFEIPDYTADVVATGALR 139
Query: 125 MLEASRISGVK-----RFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLAS 179
+LEA R + +++ A S+ ++ + +S+ P P+ Y K A+
Sbjct: 140 LLEAVRSHTIDSGRTVKYYQAGSSEMF-------GSTPPPQSETTPFHPRSPYAASKCAA 192
Query: 180 EELCKHYTKDFGIECRVGRFHNIYGPF-GTWKGMEKAPAAFCRKALTSTDKFEMWGDGLQ 238
+Y + +G+ G N P G K A R + K + G+
Sbjct: 193 HWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFL-GNLQA 251
Query: 239 TRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIV-----LSFEDKKLPIHH 293
+R + F + VE + + + + + + ++E ++ E ++ L+++D
Sbjct: 252 SRDWGFAGDYVEAMWLMLQQEKPDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQR 311
Query: 294 IPGPEGVRGRNSDNTLIKEKLGWAPSMKLKDGLRITYFWIKEQIEKEKTQGI 345
P V D + KE LGW P + + ++ + E +E K + +
Sbjct: 312 YFRPAEVDNLQGDASKAKEVLGWKPQVGFE---KLVKMMVDEDLELAKREKV 360
>pdb|2D40|A Chain A, Crystal Structure Of Z3393 From Escherichia Coli O157:h7
pdb|2D40|B Chain B, Crystal Structure Of Z3393 From Escherichia Coli O157:h7
pdb|2D40|C Chain C, Crystal Structure Of Z3393 From Escherichia Coli O157:h7
pdb|2D40|D Chain D, Crystal Structure Of Z3393 From Escherichia Coli O157:h7
Length = 354
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 27 LRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEH 63
LR V G G F A R +EG +I+ W+ ++H
Sbjct: 123 LRFIVEGKGAFTAVDGERTPXNEGDFILTPQWRWHDH 159
>pdb|1VEU|A Chain A, Crystal Structure Of The P14MP1 COMPLEX AT 2.15 A
Resolution
Length = 124
Score = 28.5 bits (62), Expect = 6.3, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 90 GVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSA 143
G F LA D G + N S+I Y NT + +++ +R+ V F +SSA
Sbjct: 48 GFLSTFALATDQGSKLGLSKNKSIICYYNT---YQVVQFNRLPLVVSFIASSSA 98
>pdb|1VET|A Chain A, Crystal Structure Of P14MP1 AT 1.9 A RESOLUTION
Length = 124
Score = 28.5 bits (62), Expect = 6.3, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 90 GVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSA 143
G F LA D G + N S+I Y NT + +++ +R+ V F +SSA
Sbjct: 48 GFLSTFALATDQGSKLGLSKNKSIICYYNT---YQVVQFNRLPLVVSFIASSSA 98
>pdb|2ZL1|A Chain A, Mp1-P14 Scaffolding Complex
Length = 143
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 90 GVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSA 143
G F LA D G N S+I Y NT + +++ +R+ V F +SSA
Sbjct: 67 GFLSTFALATDQGSKAGASKNKSIICYYNT---YQVVQFNRLPLVVSFIASSSA 117
>pdb|1SKO|A Chain A, Mp1-P14 Complex
pdb|3CPT|A Chain A, Mp1-P14 Scaffolding Complex
Length = 143
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 90 GVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSA 143
G F LA D G + N S+I Y NT + +++ +R+ V F +SSA
Sbjct: 67 GFLSTFALATDQGSKLGLSKNKSIICYYNT---YQVVQFNRLPLVVSFIASSSA 117
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,830,719
Number of Sequences: 62578
Number of extensions: 501271
Number of successful extensions: 1307
Number of sequences better than 100.0: 85
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 1150
Number of HSP's gapped (non-prelim): 98
length of query: 374
length of database: 14,973,337
effective HSP length: 100
effective length of query: 274
effective length of database: 8,715,537
effective search space: 2388057138
effective search space used: 2388057138
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)