BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017290
(374 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A3C4S4|GME1_ORYSJ GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. japonica
GN=GME-1 PE=1 SV=1
Length = 378
Score = 734 bits (1895), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/378 (92%), Positives = 364/378 (96%), Gaps = 4/378 (1%)
Query: 1 MGSTE--GT-YGAYTYEELEREPYWPSEKLRISVTGAGGFIASHIARRLKSEGHYIIASD 57
MGS+E GT YG YTY ELERE YWPSEKLRIS+TGAGGFI SHIARRLKSEGHYIIASD
Sbjct: 1 MGSSEKNGTAYGEYTYAELEREQYWPSEKLRISITGAGGFIGSHIARRLKSEGHYIIASD 60
Query: 58 WKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYN 117
WKKNEHMTEDMFCHEFHLVDLRVMDNCLKVT GVDHVFNLAADMGGMGFIQSNHSVIMYN
Sbjct: 61 WKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTNGVDHVFNLAADMGGMGFIQSNHSVIMYN 120
Query: 118 NTMISFNMLEASRISGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKL 177
NTMISFNMLEA+RI+GVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKL
Sbjct: 121 NTMISFNMLEAARINGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKL 180
Query: 178 ASEELCKHYTKDFGIECRVGRFHNIYGPFGTWK-GMEKAPAAFCRKALTSTDKFEMWGDG 236
A+EELCKHYTKDFGIECRVGRFHNIYGPFGTWK G EKAPAAFCRKA TSTD+FEMWGDG
Sbjct: 181 ATEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDG 240
Query: 237 LQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFEDKKLPIHHIPG 296
LQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEI+LSFED++LPIHHIPG
Sbjct: 241 LQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIILSFEDRELPIHHIPG 300
Query: 297 PEGVRGRNSDNTLIKEKLGWAPSMKLKDGLRITYFWIKEQIEKEKTQGIDLSVYGSSKVV 356
PEGVRGRNSDNTLIKEKLGWAP+MKLKDGLR TYFWIKEQIEKEKTQG+D++ YGSSKVV
Sbjct: 301 PEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRFTYFWIKEQIEKEKTQGVDIAGYGSSKVV 360
Query: 357 GTQAPVQLGSLRAADGKE 374
TQAPVQLGSLRAADGKE
Sbjct: 361 STQAPVQLGSLRAADGKE 378
>sp|A2Z7B3|GME1_ORYSI GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. indica
GN=OsI_032456 PE=2 SV=1
Length = 378
Score = 732 bits (1890), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/378 (92%), Positives = 363/378 (96%), Gaps = 4/378 (1%)
Query: 1 MGSTE--GT-YGAYTYEELEREPYWPSEKLRISVTGAGGFIASHIARRLKSEGHYIIASD 57
MGS+E GT YG YTY ELERE YWPSEKLRIS+TGAGGFI SHIARRLKSEGHYIIASD
Sbjct: 1 MGSSEKNGTAYGEYTYAELEREQYWPSEKLRISITGAGGFIGSHIARRLKSEGHYIIASD 60
Query: 58 WKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYN 117
WKKNEHMTEDMFCHEFHLVDLRVMDNCLKVT VDHVFNLAADMGGMGFIQSNHSVIMYN
Sbjct: 61 WKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTNSVDHVFNLAADMGGMGFIQSNHSVIMYN 120
Query: 118 NTMISFNMLEASRISGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKL 177
NTMISFNMLEA+RI+GVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKL
Sbjct: 121 NTMISFNMLEAARINGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKL 180
Query: 178 ASEELCKHYTKDFGIECRVGRFHNIYGPFGTWK-GMEKAPAAFCRKALTSTDKFEMWGDG 236
A+EELCKHYTKDFGIECRVGRFHNIYGPFGTWK G EKAPAAFCRKA TSTD+FEMWGDG
Sbjct: 181 ATEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDG 240
Query: 237 LQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFEDKKLPIHHIPG 296
LQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEI+LSFED++LPIHHIPG
Sbjct: 241 LQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIILSFEDRELPIHHIPG 300
Query: 297 PEGVRGRNSDNTLIKEKLGWAPSMKLKDGLRITYFWIKEQIEKEKTQGIDLSVYGSSKVV 356
PEGVRGRNSDNTLIKEKLGWAP+MKLKDGLR TYFWIKEQIEKEKTQG+D++ YGSSKVV
Sbjct: 301 PEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRFTYFWIKEQIEKEKTQGVDIAGYGSSKVV 360
Query: 357 GTQAPVQLGSLRAADGKE 374
TQAPVQLGSLRAADGKE
Sbjct: 361 STQAPVQLGSLRAADGKE 378
>sp|Q2R1V8|GME2_ORYSJ GDP-mannose 3,5-epimerase 2 OS=Oryza sativa subsp. japonica
GN=GME-2 PE=2 SV=2
Length = 371
Score = 725 bits (1871), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/365 (93%), Positives = 356/365 (97%), Gaps = 1/365 (0%)
Query: 11 YTYEELEREPYWPSEKLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFC 70
YTY ELE+EPYWP EKLRIS+TGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFC
Sbjct: 7 YTYVELEKEPYWPFEKLRISITGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFC 66
Query: 71 HEFHLVDLRVMDNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASR 130
HEFHLVDLRVMDNCLKVT GVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEA+R
Sbjct: 67 HEFHLVDLRVMDNCLKVTTGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAAR 126
Query: 131 ISGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDF 190
I+GVKRFFYASSACIYPEFKQL+T VSLKESDAWPAEPQDAYGLEKLA+EELCKHYTKDF
Sbjct: 127 INGVKRFFYASSACIYPEFKQLDTVVSLKESDAWPAEPQDAYGLEKLATEELCKHYTKDF 186
Query: 191 GIECRVGRFHNIYGPFGTWK-GMEKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECV 249
GIECRVGRFHNIYGPFGTWK G EKAPAAFCRKALTSTD+FEMWGDGLQTRSFTFIDECV
Sbjct: 187 GIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDRFEMWGDGLQTRSFTFIDECV 246
Query: 250 EGVLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFEDKKLPIHHIPGPEGVRGRNSDNTL 309
EGVLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFE+K+LPIHHIPGPEGVRGRNSDNTL
Sbjct: 247 EGVLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFENKQLPIHHIPGPEGVRGRNSDNTL 306
Query: 310 IKEKLGWAPSMKLKDGLRITYFWIKEQIEKEKTQGIDLSVYGSSKVVGTQAPVQLGSLRA 369
IKEKLGWAP+M+LKDGLRITYFWIKEQ+EKEK +G+DLS YGSSKVV TQAPVQLGSLRA
Sbjct: 307 IKEKLGWAPTMRLKDGLRITYFWIKEQLEKEKAEGVDLSAYGSSKVVQTQAPVQLGSLRA 366
Query: 370 ADGKE 374
ADGKE
Sbjct: 367 ADGKE 371
>sp|Q93VR3|GME_ARATH GDP-mannose 3,5-epimerase OS=Arabidopsis thaliana GN=At5g28840 PE=1
SV=1
Length = 377
Score = 719 bits (1856), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/377 (90%), Positives = 363/377 (96%), Gaps = 3/377 (0%)
Query: 1 MGSTEGT-YGAYTYEELEREPYWPSEKLRISVTGAGGFIASHIARRLKSEGHYIIASDWK 59
MG+T GT YGAYTY+ELERE YWPSE L+IS+TGAGGFIASHIARRLK EGHY+IASDWK
Sbjct: 1 MGTTNGTDYGAYTYKELEREQYWPSENLKISITGAGGFIASHIARRLKHEGHYVIASDWK 60
Query: 60 KNEHMTEDMFCHEFHLVDLRVMDNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNT 119
KNEHMTEDMFC EFHLVDLRVM+NCLKVT+GVDHVFNLAADMGGMGFIQSNHSVIMYNNT
Sbjct: 61 KNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNT 120
Query: 120 MISFNMLEASRISGVKRFFYASSACIYPEFKQLET-NVSLKESDAWPAEPQDAYGLEKLA 178
MISFNM+EA+RI+G+KRFFYASSACIYPEFKQLET NVSLKESDAWPAEPQDAYGLEKLA
Sbjct: 121 MISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKLA 180
Query: 179 SEELCKHYTKDFGIECRVGRFHNIYGPFGTWKG-MEKAPAAFCRKALTSTDKFEMWGDGL 237
+EELCKHY KDFGIECR+GRFHNIYGPFGTWKG EKAPAAFCRKA TSTD+FEMWGDGL
Sbjct: 181 TEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGL 240
Query: 238 QTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFEDKKLPIHHIPGP 297
QTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAE+VLSFE+KKLPIHHIPGP
Sbjct: 241 QTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGP 300
Query: 298 EGVRGRNSDNTLIKEKLGWAPSMKLKDGLRITYFWIKEQIEKEKTQGIDLSVYGSSKVVG 357
EGVRGRNSDN LIKEKLGWAP+M+LK+GLRITYFWIKEQIEKEK +G D+S+YGSSKVVG
Sbjct: 301 EGVRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFWIKEQIEKEKAKGSDVSLYGSSKVVG 360
Query: 358 TQAPVQLGSLRAADGKE 374
TQAPVQLGSLRAADGKE
Sbjct: 361 TQAPVQLGSLRAADGKE 377
>sp|Q6GMI9|UXS1_DANRE UDP-glucuronic acid decarboxylase 1 OS=Danio rerio GN=uxs1 PE=2
SV=2
Length = 418
Score = 115 bits (288), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 90/328 (27%), Positives = 157/328 (47%), Gaps = 28/328 (8%)
Query: 25 EKLRISVTGAGGFIASHIARRLKSEGHYIIASD--WKKNEHMTEDMFCHE-FHLVDLRVM 81
++ RI +TG GF+ SH+ +L +GH + D + + E HE F L++ V+
Sbjct: 85 DRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVV 144
Query: 82 DNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYAS 141
+ + VD +++LA+ ++ N + NT+ + NML ++ G R AS
Sbjct: 145 E---PLYIEVDQIYHLASPASPPNYMY-NPIKTLKTNTIGTLNMLGLAKRVGA-RLLLAS 199
Query: 142 SACIY--PEFKQLETNVSLKESDAW----PAEPQDAYGLEKLASEELCKHYTKDFGIECR 195
++ +Y PE V + D W P P+ Y K +E +C Y K G+E R
Sbjct: 200 TSEVYGDPE-------VHPQNEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVR 252
Query: 196 VGRFHNIYGPFGTWKGME--KAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECVEGVL 253
V R I+ FG+ M + + F +AL + ++G G QTR+F ++ + V G++
Sbjct: 253 VAR---IFNTFGSRMHMNDGRVVSNFILQALQG-EALTVYGSGSQTRAFQYVSDLVNGLV 308
Query: 254 RLTKSDFREPVNIGSDEMVSMNEMAEIVLSFEDKKLPIHHIP-GPEGVRGRNSDNTLIKE 312
L S+ PVN+G+ E ++ E A+++ S + I +P + + R D K
Sbjct: 309 SLMNSNISSPVNLGNPEEHTILEFAQLIKSLVASRSHIQFLPEAQDDPQRRRPDIRKAKL 368
Query: 313 KLGWAPSMKLKDGLRITYFWIKEQIEKE 340
LGW P + L++GL T + ++E +
Sbjct: 369 LLGWEPVVPLEEGLNKTIQYFSRELEHQ 396
>sp|Q5PQX0|UXS1_RAT UDP-glucuronic acid decarboxylase 1 OS=Rattus norvegicus GN=Uxs1
PE=1 SV=1
Length = 420
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 86/324 (26%), Positives = 153/324 (47%), Gaps = 24/324 (7%)
Query: 25 EKLRISVTGAGGFIASHIARRLKSEGHYIIASD--WKKNEHMTEDMFCHE-FHLVDLRVM 81
++ RI +TG GF+ SH+ +L +GH + D + + E HE F L++ V+
Sbjct: 87 DRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVV 146
Query: 82 DNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYAS 141
+ + VD +++LA+ ++ N + NT+ + NML ++ G R AS
Sbjct: 147 E---PLYIEVDQIYHLASPASPPNYMY-NPIKTLKTNTIGTLNMLGLAKRVGA-RLLLAS 201
Query: 142 SACIY--PEFKQLETNVSLKESDAW----PAEPQDAYGLEKLASEELCKHYTKDFGIECR 195
++ +Y PE V + D W P P+ Y K +E +C Y K G+E R
Sbjct: 202 TSEVYGDPE-------VHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVR 254
Query: 196 VGRFHNIYGPFGTWKGMEKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECVEGVLRL 255
V R N +GP + + F +AL + ++G G QTR+F ++ + V G++ L
Sbjct: 255 VARIFNTFGPRMHMND-GRVVSNFILQALQG-EPLTVYGSGSQTRAFQYVSDLVNGLVAL 312
Query: 256 TKSDFREPVNIGSDEMVSMNEMAEIVLSFEDKKLPIHHIP-GPEGVRGRNSDNTLIKEKL 314
S+ PVN+G+ E ++ E A+++ + I + + + R D K L
Sbjct: 313 MNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLML 372
Query: 315 GWAPSMKLKDGLRITYFWIKEQIE 338
GW P + L++GL + ++++E
Sbjct: 373 GWEPVVPLEEGLNKAIHYFRKELE 396
>sp|Q91XL3|UXS1_MOUSE UDP-glucuronic acid decarboxylase 1 OS=Mus musculus GN=Uxs1 PE=2
SV=1
Length = 420
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 86/324 (26%), Positives = 153/324 (47%), Gaps = 24/324 (7%)
Query: 25 EKLRISVTGAGGFIASHIARRLKSEGHYIIASD--WKKNEHMTEDMFCHE-FHLVDLRVM 81
++ RI +TG GF+ SH+ +L +GH + D + + E HE F L++ V+
Sbjct: 87 DRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVV 146
Query: 82 DNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYAS 141
+ + VD +++LA+ ++ N + NT+ + NML ++ G R AS
Sbjct: 147 E---PLYIEVDQIYHLASPASPPNYMY-NPIKTLKTNTIGTLNMLGLAKRVGA-RLLLAS 201
Query: 142 SACIY--PEFKQLETNVSLKESDAW----PAEPQDAYGLEKLASEELCKHYTKDFGIECR 195
++ +Y PE V + D W P P+ Y K +E +C Y K G+E R
Sbjct: 202 TSEVYGDPE-------VHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVR 254
Query: 196 VGRFHNIYGPFGTWKGMEKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECVEGVLRL 255
V R N +GP + + F +AL + ++G G QTR+F ++ + V G++ L
Sbjct: 255 VARIFNTFGPRMHMND-GRVVSNFILQALQG-EPLTVYGSGSQTRAFQYVSDLVNGLVAL 312
Query: 256 TKSDFREPVNIGSDEMVSMNEMAEIVLSFEDKKLPIHHIP-GPEGVRGRNSDNTLIKEKL 314
S+ PVN+G+ E ++ E A+++ + I + + + R D K L
Sbjct: 313 MNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLML 372
Query: 315 GWAPSMKLKDGLRITYFWIKEQIE 338
GW P + L++GL + ++++E
Sbjct: 373 GWEPVVPLEEGLNKAIHYFRKELE 396
>sp|Q8NBZ7|UXS1_HUMAN UDP-glucuronic acid decarboxylase 1 OS=Homo sapiens GN=UXS1 PE=1
SV=1
Length = 420
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 86/324 (26%), Positives = 153/324 (47%), Gaps = 24/324 (7%)
Query: 25 EKLRISVTGAGGFIASHIARRLKSEGHYIIASD--WKKNEHMTEDMFCHE-FHLVDLRVM 81
++ RI +TG GF+ SH+ +L +GH + D + + E HE F L++ V+
Sbjct: 87 DRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVV 146
Query: 82 DNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYAS 141
+ + VD +++LA+ ++ N + NT+ + NML ++ G R AS
Sbjct: 147 E---PLYIEVDQIYHLASPASPPNYMY-NPIKTLKTNTIGTLNMLGLAKRVGA-RLLLAS 201
Query: 142 SACIY--PEFKQLETNVSLKESDAW----PAEPQDAYGLEKLASEELCKHYTKDFGIECR 195
++ +Y PE V + D W P P+ Y K +E +C Y K G+E R
Sbjct: 202 TSEVYGDPE-------VHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVR 254
Query: 196 VGRFHNIYGPFGTWKGMEKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECVEGVLRL 255
V R N +GP + + F +AL + ++G G QTR+F ++ + V G++ L
Sbjct: 255 VARIFNTFGPRMHMND-GRVVSNFILQALQG-EPLTVYGSGSQTRAFQYVSDLVNGLVAL 312
Query: 256 TKSDFREPVNIGSDEMVSMNEMAEIVLSFEDKKLPIHHIP-GPEGVRGRNSDNTLIKEKL 314
S+ PVN+G+ E ++ E A+++ + I + + + R D K L
Sbjct: 313 MNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLML 372
Query: 315 GWAPSMKLKDGLRITYFWIKEQIE 338
GW P + L++GL + ++++E
Sbjct: 373 GWEPVVPLEEGLNKAIHYFRKELE 396
>sp|Q5R885|UXS1_PONAB UDP-glucuronic acid decarboxylase 1 OS=Pongo abelii GN=UXS1 PE=2
SV=1
Length = 420
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 86/324 (26%), Positives = 153/324 (47%), Gaps = 24/324 (7%)
Query: 25 EKLRISVTGAGGFIASHIARRLKSEGHYIIASD--WKKNEHMTEDMFCHE-FHLVDLRVM 81
++ RI +TG GF+ SH+ +L +GH + D + + E HE F L++ V+
Sbjct: 87 DRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVV 146
Query: 82 DNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYAS 141
+ + VD +++LA+ ++ N + NT+ + NML ++ G R AS
Sbjct: 147 E---PLYIEVDQIYHLASPASPPNYMY-NPIKTLKTNTIGTLNMLGLAKRVGA-RLLLAS 201
Query: 142 SACIY--PEFKQLETNVSLKESDAW----PAEPQDAYGLEKLASEELCKHYTKDFGIECR 195
++ +Y PE V + D W P P+ Y K +E +C Y K G+E R
Sbjct: 202 TSEVYGDPE-------VHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVR 254
Query: 196 VGRFHNIYGPFGTWKGMEKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECVEGVLRL 255
V R N +GP + + F +AL + ++G G QTR+F ++ + V G++ L
Sbjct: 255 VARIFNTFGPRMHMND-GRVVSNFILQALQG-EPLTVYGSGSQTRAFQYVSDLVNGLVAL 312
Query: 256 TKSDFREPVNIGSDEMVSMNEMAEIVLSFEDKKLPIHHIP-GPEGVRGRNSDNTLIKEKL 314
S+ PVN+G+ E ++ E A+++ + I + + + R D K L
Sbjct: 313 MNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLML 372
Query: 315 GWAPSMKLKDGLRITYFWIKEQIE 338
GW P + L++GL + ++++E
Sbjct: 373 GWEPVVPLEEGLNKAIHYFRKELE 396
>sp|Q6DF08|UXS1_XENTR UDP-glucuronic acid decarboxylase 1 OS=Xenopus tropicalis GN=uxs1
PE=2 SV=1
Length = 421
Score = 108 bits (269), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 85/326 (26%), Positives = 154/326 (47%), Gaps = 24/326 (7%)
Query: 25 EKLRISVTGAGGFIASHIARRLKSEGHYIIASD--WKKNEHMTEDMFCHE-FHLVDLRVM 81
++ RI +TG GF+ SH+ +L +GH + D + + E HE F L++ V+
Sbjct: 88 DRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVV 147
Query: 82 DNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYAS 141
+ + VD +++LA+ ++ N + NT+ + NML ++ G R AS
Sbjct: 148 E---PLYIEVDQIYHLASPASPPNYM-YNPIKTLKTNTIGTLNMLGLAKRVGA-RLLLAS 202
Query: 142 SACIY--PEFKQLETNVSLKESDAW----PAEPQDAYGLEKLASEELCKHYTKDFGIECR 195
++ +Y PE V + + W P P+ Y K +E +C Y K G+E R
Sbjct: 203 TSEVYGDPE-------VHPQSEEYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVR 255
Query: 196 VGRFHNIYGPFGTWKGMEKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECVEGVLRL 255
V R N +GP + + F +AL ++ ++G G QTR+F ++ + V G++ L
Sbjct: 256 VARIFNTFGPRMHMND-GRVVSNFILQALQG-EQLTVYGSGEQTRAFQYVSDLVNGLVAL 313
Query: 256 TKSDFREPVNIGSDEMVSMNEMAEIVLSFEDKKLPIHHIP-GPEGVRGRNSDNTLIKEKL 314
S+ PVN+G+ + S+ + A ++ I + + + R D K L
Sbjct: 314 MNSNVSSPVNLGNPQEHSIVQFARLIKQLVGSGGEISFLSEAQDDPQRRKPDIRKAKLLL 373
Query: 315 GWAPSMKLKDGLRITYFWIKEQIEKE 340
GW P + L++GL T + ++++E +
Sbjct: 374 GWEPVVPLEEGLNKTIHYFRKELEHQ 399
>sp|O34886|YTCB_BACSU Uncharacterized UDP-glucose epimerase YtcB OS=Bacillus subtilis
(strain 168) GN=ytcB PE=3 SV=1
Length = 316
Score = 105 bits (261), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 92/319 (28%), Positives = 143/319 (44%), Gaps = 36/319 (11%)
Query: 27 LRISVTGAGGFIASHIARRL-KSEGHYIIASD------------WKKNEHMTEDMFCHEF 73
++I VTGA GFI SH+ L K + H +I D + E F F
Sbjct: 1 MKILVTGAAGFIGSHLCEELLKDKKHNVIGIDDFIGPTPFSLKLKNLKNLLPEKRFT--F 58
Query: 74 HLVDLRVMDNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISG 133
+L D + +GVD +F+LAA G ++ +N +LEA R
Sbjct: 59 IKENLLTAD-LASLLEGVDVIFHLAAIPGVRSSWGNHFHPYAAHNIQALQRLLEACREHS 117
Query: 134 VKRFFYASSACIYPEFK-QLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGI 192
++ F +AS++ +Y E + ++ N SL P YG+ KL E+LC Y + FGI
Sbjct: 118 IQTFVFASTSSVYGEKQGKVSENTSL--------SPLSPYGVTKLTGEKLCHVYKQSFGI 169
Query: 193 ECRVGRFHNIYGPFGTWKGMEKAPAAFCR--KALTSTDKFEMWGDGLQTRSFTFIDECVE 250
+ RF +YGP ++ AF R K ++GDG Q+R FT+I +CV+
Sbjct: 170 PIVILRFFTVYGP------RQRPDMAFHRLIKQHLQQKPLTIFGDGQQSRDFTYISDCVK 223
Query: 251 GVLRLTKSD--FREPVNIGSDEMVSMNEMAEIVLSFEDKKLPIHHIPGPEGVRGRN-SDN 307
G+ + E VNIG E S+ ++ ++ +K +H G +D
Sbjct: 224 GITAVLGKPHLIGETVNIGGAERASVLKVVSLIEDISGRKATLHFSDKIAGEPSNTWADI 283
Query: 308 TLIKEKLGWAPSMKLKDGL 326
+ K+ L + P+ LKDGL
Sbjct: 284 SKAKQLLHYDPATSLKDGL 302
>sp|Q57664|GALE_METJA Putative UDP-glucose 4-epimerase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0211 PE=3 SV=1
Length = 305
Score = 100 bits (248), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 91/316 (28%), Positives = 144/316 (45%), Gaps = 23/316 (7%)
Query: 29 ISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVT 88
I VTG GFI SHI +L + +I D + EF D+R D K+
Sbjct: 2 ILVTGGAGFIGSHIVDKLIENNYDVIILDNLTTGNKNNINPKAEFVNADIRDKDLDEKIN 61
Query: 89 -KGVDHVFNLAADMGGMGFIQSNHSVIMYN---NTMISFNMLEASRISGVKRFFYASSA- 143
K V+ V + AA + +++ +Y+ N + + N+LE R + + +ASS
Sbjct: 62 FKDVEVVIHQAAQINVRNSVENP----VYDGDINVLGTINILEMMRKYDIDKIVFASSGG 117
Query: 144 CIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIY 203
+Y E L + + P P YGL K EE K Y + +GIE + R+ N+Y
Sbjct: 118 AVYGEPNYLPVD------ENHPINPLSPYGLSKYVGEEYIKLYNRLYGIEYAILRYSNVY 171
Query: 204 GPFGTWKGMEKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREP 263
G KG + F K L + ++GDG QTR F ++ + + L + + E
Sbjct: 172 GERQDPKGEAGVISIFIDKMLKNQSPI-IFGDGNQTRDFVYVGDVAKANL-MALNWKNEI 229
Query: 264 VNIGSDEMVSMNEMAEIV---LSFEDKKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPSM 320
VNIG+ + S+NE+ +I+ + F + I+ P EG R + E LGW P +
Sbjct: 230 VNIGTGKETSVNELFDIIKHEIGFRGE--AIYDKP-REGEVYRIYLDIKKAESLGWKPEI 286
Query: 321 KLKDGLRITYFWIKEQ 336
LK+G++ W+K
Sbjct: 287 DLKEGIKRVVNWMKNN 302
>sp|Q67WR5|FCL2_ORYSJ Putative GDP-L-fucose synthase 2 OS=Oryza sativa subsp. japonica
GN=Os06g0652300 PE=3 SV=1
Length = 347
Score = 95.5 bits (236), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 124/253 (49%), Gaps = 11/253 (4%)
Query: 93 HVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISG-VKRFFYASSACIYPEFKQ 151
+V AA +GG+ + + + N I+ N+++A+R G V++ +S+ IYP
Sbjct: 89 YVILAAAKVGGVHASSAAPAEYLTENLRITVNVVDAARRCGSVRKLLVLASSTIYPADAP 148
Query: 152 LETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKG 211
T S + PAE + Y + K+A ++C+ ++G++ +N+YGP +
Sbjct: 149 QPTPESALLTGP-PAEGSEWYAIPKIAGIKMCQAVRAEYGLDAIAAAPNNLYGPRHPFPP 207
Query: 212 MEK--APAA---FCRKALTSTDKFEMWGDGLQTRSFTFIDECVEGVLRLT-KSDFREPVN 265
PA F R L + +WG G R FT +D+ E V+ L + E VN
Sbjct: 208 EHSHVIPALIRRFHRAKLEGAGEVAVWGSGAAAREFTHVDDLAEAVVVLMERYSGEEHVN 267
Query: 266 IGSDEMVSMNEMAEIVLSFEDKKLPIH-HIPGPEGVRGRNSDNTLIKEKLGWAPSMKLKD 324
+GS E V++ E+AE V + + PEGV R D+ ++ KLGW P + L+D
Sbjct: 268 VGSGEEVTVRELAEAVRGVVGYEGVVAWDAARPEGVARRVVDSGRMR-KLGWEPRVALRD 326
Query: 325 GLRITY-FWIKEQ 336
G++ Y F+++ +
Sbjct: 327 GIQDLYRFYLRHE 339
>sp|P55353|Y4AF_RHISN Uncharacterized protein y4aF OS=Rhizobium sp. (strain NGR234)
GN=NGR_a00420 PE=3 SV=1
Length = 314
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 91/321 (28%), Positives = 142/321 (44%), Gaps = 28/321 (8%)
Query: 20 PYWPSEKLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLR 79
P + + RI V G G + S I R L SE +I +D +K + +T +F L
Sbjct: 2 PMYLLDGKRIWVAGHKGMVGSAIIRSLASEDCEVIVADRQKLD-LTRQEEVEKFLL---- 56
Query: 80 VMDNCLKVTKGVDH-VFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFF 138
K H V AA +GG+ + + +Y N ++ N++E S SGV++
Sbjct: 57 ---------KEKPHAVIMAAAKVGGILANDTMPADFIYQNLIMEANVIEGSFRSGVEKLL 107
Query: 139 YASSACIYPEFKQLETNVSLKESDAWPAEPQDA-YGLEKLASEELCKHYTKDFGIECRVG 197
+ S+CIYP++ + + P EP + Y + K+A +LC+ Y K +G
Sbjct: 108 FLGSSCIYPKYAA--QPIREEALLTGPLEPTNEWYAIAKIAGIKLCQAYRKQYGANFISA 165
Query: 198 RFHNIYGPFGTWK-GMEKAPAAFCRKALTSTDK----FEMWGDGLQTRSFTFIDECVEGV 252
N+YGP + A RKA + K +WG G TR F + ++C + +
Sbjct: 166 MPTNLYGPRDKFDLNSSHVVPALIRKAHEAKIKDLGCLSIWGSGTPTRDFLYSEDCSDAL 225
Query: 253 LRLTKS-DFREPVNIGSDEMVSMNEMAEIVLSFEDKKLPI-HHIPGPEGV-RGRNSDNTL 309
+ L K E +NIGS +S+ E+A IV K I P+G R S L
Sbjct: 226 VFLLKHYSETEHINIGSGGEISIIELAHIVCRVVGFKGDIVFDTSKPDGTPRKLLSSERL 285
Query: 310 IKEKLGWAPSMKLKDGLRITY 330
+ +GW P L+ GL +Y
Sbjct: 286 V--SMGWRPKTSLELGLAKSY 304
>sp|Q9LMU0|FCL2_ARATH Putative GDP-L-fucose synthase 2 OS=Arabidopsis thaliana GN=GER2
PE=2 SV=1
Length = 328
Score = 92.4 bits (228), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 84/340 (24%), Positives = 146/340 (42%), Gaps = 27/340 (7%)
Query: 12 TYEELEREPYWPSEKLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCH 71
T E++ + + +I V G G + S I R+L+ +G + +T
Sbjct: 5 TGSEMKSGSFMLEKSAKIFVAGHRGLVGSAIVRKLQDQGFTNLVLRTHSELDLTSQSDVE 64
Query: 72 EFHLVDLRVMDNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRI 131
F + V +V AA +GG+ + + + N I N++ ++
Sbjct: 65 SFFATEKPV------------YVILAAAKVGGIHANNTYPADFIGVNLQIQTNVIHSAYT 112
Query: 132 SGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDA-YGLEKLASEELCKHYTKDF 190
GVK+ + S+CIYP+F S + P EP + Y + K+A ++C+ Y
Sbjct: 113 HGVKKLLFLGSSCIYPKFAPQPIPESALLTG--PLEPTNEWYAIAKIAGIKMCQAYRLQH 170
Query: 191 GIECRVGRFHNIYGPFGTW--KGMEKAPAA---FCRKALTSTDKFEMWGDGLQTRSFTFI 245
+ G N+YG + + PA F + D+ +WG G R F +
Sbjct: 171 QWDAISGMPTNLYGQNDNFHPENSHVLPALMRRFHEAKANNADEVVVWGSGSPLREFLHV 230
Query: 246 DECVEG-VLRLTKSDFREPVNIGSDEMVSMNEMAEIV---LSFEDKKLPIHHIPGPEGVR 301
D+ + V + + E VN+GS V++ E+AE+V + F+ K + P+G
Sbjct: 231 DDLADACVFLMDQYSGFEHVNVGSGVEVTIKELAELVKEVVGFKGKL--VWDTTKPDGTP 288
Query: 302 GRNSDNTLIKEKLGWAPSMKLKDGLRITYFWIKEQIEKEK 341
+ D++ + LGW P + LKDGL TY W E + ++K
Sbjct: 289 RKLMDSSKLAS-LGWTPKISLKDGLSQTYEWYLENVVQKK 327
>sp|O49213|FCL1_ARATH GDP-L-fucose synthase 1 OS=Arabidopsis thaliana GN=GER1 PE=1 SV=3
Length = 323
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 82/325 (25%), Positives = 139/325 (42%), Gaps = 37/325 (11%)
Query: 28 RISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKV 87
+I V G G + S I R+L+ +G + +T F + V
Sbjct: 18 KIFVAGHRGLVGSAIVRKLQEQGFTNLVLKTHAELDLTRQADVESFFSQEKPV------- 70
Query: 88 TKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACIYP 147
+V AA +GG+ + + + N I N++ ++ GVK+ + S+CIYP
Sbjct: 71 -----YVILAAAKVGGIHANNTYPADFIGVNLQIQTNVIHSAYEHGVKKLLFLGSSCIYP 125
Query: 148 EF------KQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHN 201
+F + SL+ ++ W Y + K+A + C+ Y G + G N
Sbjct: 126 KFAPQPIPESALLTASLEPTNEW-------YAIAKIAGIKTCQAYRIQHGWDAISGMPTN 178
Query: 202 IYGPFGTW--KGMEKAPAA---FCRKALTSTDKFEMWGDGLQTRSFTFIDECVEG-VLRL 255
+YGP + + PA F + ++ +WG G R F +D+ + V L
Sbjct: 179 LYGPNDNFHPENSHVLPALMRRFHEAKVNGAEEVVVWGTGSPLREFLHVDDLADACVFLL 238
Query: 256 TKSDFREPVNIGSDEMVSMNEMAEI---VLSFEDKKLPIHHIPGPEGVRGRNSDNTLIKE 312
+ E VNIGS + V++ E+AE+ V+ FE K P+G + D++ +
Sbjct: 239 DRYSGLEHVNIGSGQEVTIRELAELVKEVVGFEGKLG--WDCTKPDGTPRKLMDSSKLA- 295
Query: 313 KLGWAPSMKLKDGLRITYFWIKEQI 337
LGW P + L+DGL TY W + +
Sbjct: 296 SLGWTPKVSLRDGLSQTYDWYLKNV 320
>sp|Q331Q7|GERKI_STRSQ dTDP-4-dehydro-6-deoxyglucose reductase OS=Streptomyces sp.
GN=gerKI PE=1 SV=1
Length = 326
Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 86/320 (26%), Positives = 139/320 (43%), Gaps = 22/320 (6%)
Query: 29 ISVTGAGGFIASHIARRLKSEGHYIIA-SDWKKNEHMTEDMFCHEFHLVDLRVMDNC--- 84
+ VTGA GFI SH R+L + G ++A ++ E E + LV + D
Sbjct: 11 VLVTGALGFIGSHFVRQLDARGAEVLALYRTERPEIQAELAALNRVRLVRTELRDESDVR 70
Query: 85 ---LKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYAS 141
+ +D V + AA G F + I+ +N N+L R GV S
Sbjct: 71 GAFKYLAPSIDTVVHCAAMDGNAQFKLERSAEILDSNQRTISNLLNCVRDFGVGEVVVMS 130
Query: 142 SACIYPEFKQLETNVSLKESDAWPAEPQ---DAYGLEKLASEELCKHYTKDFGIECRVGR 198
S+ +Y V+ +E D + + + Y L K E L + + + FG + R
Sbjct: 131 SSELY----SASPTVAAREEDDFRRSMRYTDNGYVLSKTYGEILARLHREQFGTNVFLVR 186
Query: 199 FHNIYGP---FGTWKGMEKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECVEGVLRL 255
N+YGP F +G P+ + + ++ E+WGDG QTRSF + + V LRL
Sbjct: 187 PGNVYGPGDGFDCSRG-RVIPSMLAKA--DAGEEIEIWGDGSQTRSFVHVADLVRASLRL 243
Query: 256 TKSDFREPVNIGSDEMVSMNEMAEIVLSFEDKKLPIHHIPG-PEGVRGRNSDNTLIKEKL 314
++ +N+ E VS+ E+A +V++ + I P P G R D + + E +
Sbjct: 244 LETGKYPEMNVAGAEQVSILELAGMVMAVLGRPERIRLDPSRPVGAPSRLLDLSRMSEVI 303
Query: 315 GWAPSMKLKDGLRITYFWIK 334
+ P L+ GL T W +
Sbjct: 304 DFDPQ-PLRAGLEETARWYR 322
>sp|P39858|CAPI_STAAU Protein CapI OS=Staphylococcus aureus GN=capI PE=3 SV=1
Length = 334
Score = 88.6 bits (218), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 115/243 (47%), Gaps = 23/243 (9%)
Query: 27 LRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEH---MTEDMF------CHEFHLVD 77
++I +TG GFI SH+A++L +GHY+I D + + + ED F+ V
Sbjct: 1 MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK 60
Query: 78 LRVMDNCLK--VTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISF-NMLEASRISGV 134
L D+ K V + + V NLAA G I++ + I ++ ++ F N+LE SR +
Sbjct: 61 LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYI--DSNIVGFMNILECSRHFNI 118
Query: 135 KRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIEC 194
+ YASS+ +Y T+ SD P Y K ++E + Y+ + +
Sbjct: 119 QNLIYASSSSVY----GANTSKPFSTSDNI-DHPLSLYAATKKSNELMAHTYSHLYNLPT 173
Query: 195 RVGRFHNIYGPFGTWKGMEKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECVEGVLR 254
RF +YGP W + A F KA+ + +++ G R FT++D+ VE + R
Sbjct: 174 TGLRFFTVYGP---WGRPDMALFKFT-KAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISR 229
Query: 255 LTK 257
L K
Sbjct: 230 LVK 232
>sp|Q67WR2|FCL1_ORYSJ Probable GDP-L-fucose synthase 1 OS=Oryza sativa subsp. japonica
GN=Os06g0652400 PE=2 SV=1
Length = 328
Score = 88.2 bits (217), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 84/327 (25%), Positives = 143/327 (43%), Gaps = 32/327 (9%)
Query: 28 RISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKV 87
++ V G G + S I R L S G + +T F +L
Sbjct: 20 KVFVAGHRGLVGSAILRHLVSLGFTNVVVRTHAELDLTRQSDVEAFFAAELP-------- 71
Query: 88 TKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISG-VKRFFYASSACIY 146
+V AA +GG+ + + + N I N+++A+ G V++ + S+CIY
Sbjct: 72 ----RYVVLAAAKVGGIHANSTFPADFIAANLQIQTNVVDAALKCGSVRKLLFLGSSCIY 127
Query: 147 PEF--KQLETNVSLKESDAWPAEPQDA-YGLEKLASEELCKHYTKDFGIECRVGRFHNIY 203
P+F + + N L + P EP + Y + K+A ++C+ Y G + N+Y
Sbjct: 128 PKFAPQPIPENSLL----SGPLEPTNEWYAVAKIAGIKMCQAYRIQHGFDAISAMPTNLY 183
Query: 204 GPFGTW--KGMEKAPAA---FCRKALTSTDKFEMWGDGLQTRSFTFIDECVEGVLRLTKS 258
GP + + PA F ++ + +WG G R F +D+ + V+ L
Sbjct: 184 GPQDNFHPENSHVLPALIRRFHEAKASNAAEVVVWGTGSPLREFLHVDDLADAVIFLMDH 243
Query: 259 -DFREPVNIGSDEMVSMNEMAEIV---LSFEDKKLPIHHIPGPEGVRGRNSDNTLIKEKL 314
E VN+GS V++ E+AE+V + F+ K + P+G + D++ I+E +
Sbjct: 244 YSGLEHVNVGSGSEVTIKELAELVKEVVGFQGKL--VWDSSKPDGTPRKLMDSSKIQE-M 300
Query: 315 GWAPSMKLKDGLRITYFWIKEQIEKEK 341
GW P + LK+GL TY W E + K
Sbjct: 301 GWKPKVPLKEGLVETYKWYVENVISAK 327
>sp|P32055|FCL_ECOLI GDP-L-fucose synthase OS=Escherichia coli (strain K12) GN=fcl PE=1
SV=2
Length = 321
Score = 88.2 bits (217), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 76/331 (22%), Positives = 138/331 (41%), Gaps = 32/331 (9%)
Query: 26 KLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCL 85
K R+ + G G + S I R+L+ G + + ++ + H+F
Sbjct: 3 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFF----------- 51
Query: 86 KVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACI 145
++ +D V+ AA +GG+ + + +Y N MI N++ A+ + V + + S+CI
Sbjct: 52 -ASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCI 110
Query: 146 YPEF-KQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYG 204
YP+ KQ L + P + Y + K+A +LC+ Y + +G + R N+YG
Sbjct: 111 YPKLAKQPMAESELLQGTLEPT--NEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYG 168
Query: 205 PFGTW--KGMEKAPAAFCR---KALTSTDKFEMWGDGLQTRSFTFIDECVEG---VLRLT 256
P + PA R + +WG G R F +D+ V+ L
Sbjct: 169 PHDNFHPSNSHVIPALLRRFHEATAQNAPDVVVWGSGTPMREFLHVDDMAAASIHVMELA 228
Query: 257 KSDFREP-------VNIGSDEMVSMNEMAEIVLSFED-KKLPIHHIPGPEGVRGRNSDNT 308
+ E +N+G+ ++ E+A+ + K + P+G + D T
Sbjct: 229 HEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVT 288
Query: 309 LIKEKLGWAPSMKLKDGLRITYFWIKEQIEK 339
+ +LGW + L+ GL TY W E ++
Sbjct: 289 RL-HQLGWYHEISLEAGLASTYQWFLENQDR 318
>sp|O22141|GAE4_ARATH UDP-glucuronate 4-epimerase 4 OS=Arabidopsis thaliana GN=GAE4 PE=1
SV=1
Length = 437
Score = 85.1 bits (209), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 95/366 (25%), Positives = 155/366 (42%), Gaps = 55/366 (15%)
Query: 7 TYGAYTYEELEREPYWPSEKLRIS--------VTGAGGFIASHIARRLKSEGHYIIASD- 57
TYG +E+ R S ++R S VTGA GF+ +H++ LK G +I D
Sbjct: 73 TYGGPAWEKRLRS----SARIRTSTNNGITVLVTGAAGFVGTHVSAALKRRGDGVIGLDN 128
Query: 58 ---------WKKNEHMTE--DMFCHEFHLVDLRVMDNCLKVTKGVDHVFNLAADMGGMGF 106
+ + E +F E + D+ ++ K+ HV +LAA G+ +
Sbjct: 129 FNDYYDPSLKRARRALLERSGIFIVEGDINDVELLRKLFKIV-SFTHVMHLAAQ-AGVRY 186
Query: 107 IQSNHSVIMYNNTMISFNMLEASR-ISGVKRFFYASSACIYPEFKQLETNVSLKESDAWP 165
N S +++N N+LE + ++ +ASS+ +Y L T V E D
Sbjct: 187 AMENPSSYVHSNIAGFVNLLEICKSVNPQPAIVWASSSSVY----GLNTKVPFSEKDK-T 241
Query: 166 AEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGMEKAPAAFCRKAL- 224
+P Y K A EE+ Y +G+ RF +YGP W + A F + L
Sbjct: 242 DQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGP---WGRPDMAYFFFTKDILK 298
Query: 225 -TSTDKFEMWGDGLQTRSFTFIDECVEGVLRLTKS---------DFREPV-----NIGSD 269
S FE G R FT+ID+ V+G L + R P N+G+
Sbjct: 299 GKSISIFESANHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGPAQLRVFNLGNT 358
Query: 270 EMVSMNEMAEIV---LSFEDKKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPSMKLKDGL 326
V ++++ I+ L + KK I +P V +++ +L + +LG+ P+ L+ GL
Sbjct: 359 SPVPVSDLVRILERQLKVKAKKNLI-KMPRNGDVPFTHANISLAQRELGYKPTTDLQTGL 417
Query: 327 RITYFW 332
+ W
Sbjct: 418 KKFVRW 423
>sp|Q04871|YCL2_ECO11 Uncharacterized 37.6 kDa protein in cld 5'region OS=Escherichia
coli O111:H- PE=3 SV=1
Length = 334
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 85/346 (24%), Positives = 146/346 (42%), Gaps = 53/346 (15%)
Query: 27 LRISVTGAGGFIASHIARRLKSEGHYIIASD-----------WKKNEHMTEDMFCHEFHL 75
++ VTGA GFI H+++RL GH ++ D + E + + F +FH
Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGF--QFHK 58
Query: 76 VDL--RVMDNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISG 133
+DL R L + + VF + +++ H+ N T N+LE R +
Sbjct: 59 IDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGF-LNILEGCRHNK 117
Query: 134 VKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIE 193
++ YASS+ +Y +++ + +D P Y K A+E + Y+ +G+
Sbjct: 118 IQHLLYASSSSVYGLNRKMPFS-----TDDSVDHPVSLYAATKKANELMAHTYSHLYGLP 172
Query: 194 CRVGRFHNIYGPFGTWKGMEKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECVEGVL 253
RF +YGP W + A F KA+ +++ G R FT+ID+ E ++
Sbjct: 173 ATGLRFFTVYGP---WGRPDMALFKFT-KAMLEGKSIDVYNYGKMKRDFTYIDDIAEAII 228
Query: 254 RL----------------TKSDFREP---VNIGSD---EMVSMNEMAEIVLSFEDKK--L 289
RL T + P NIG+ E++ + E L E KK L
Sbjct: 229 RLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNML 288
Query: 290 PIHHIPGPEGVRGRNSDNTLIKEKLGWAPSMKLKDGLRITYFWIKE 335
P+ P V ++D + E +G+ P +KDG++ W ++
Sbjct: 289 PLQ----PGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRD 330
>sp|O54067|LPSL_RHIME UDP-glucuronate 5'-epimerase OS=Rhizobium meliloti (strain 1021)
GN=lspL PE=3 SV=2
Length = 341
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 81/351 (23%), Positives = 144/351 (41%), Gaps = 47/351 (13%)
Query: 27 LRISVTGAGGFIASHIARRLKSEGHYIIASD---------WKKNEHM----TEDMFCHEF 73
+R +TG GFI H+A+RL EGH+++ D K+ H +
Sbjct: 1 MRYLITGTAGFIGFHVAKRLIDEGHFVVGFDGMTPYYDVTLKERRHAILQRSNGFKAVTA 60
Query: 74 HLVDLRVMDNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISG 133
L D +D ++ + + + +LAA G+ + N + N + S+NMLE ++
Sbjct: 61 MLEDRAALDRAAELAEP-EVIIHLAAQ-AGVRYSLENPKAYVDANLVGSWNMLELAKAIA 118
Query: 134 VKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIE 193
K AS++ IY + E+D EP Y K + E + Y + +
Sbjct: 119 PKHLMLASTSSIY----GANEKIPFAEADR-ADEPMTLYAATKKSMELMAHSYAHLYKVP 173
Query: 194 CRVGRFHNIYGPFGTWKGMEKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECVEGVL 253
RF +YGP W + A F A+ + +++G+G +R FT+ID+ VE ++
Sbjct: 174 TTSFRFFTVYGP---WGRPDMALFKFV-DAIHNGRPIDIYGEGRMSRDFTYIDDLVESIV 229
Query: 254 RLT---------------------KSDFREPVNIGSDEMVSMNEMAEIVLSFEDKKLPIH 292
RL+ + FR VN G + V + E V + +
Sbjct: 230 RLSHVPPSEENRVAPEKATDTLSRHAPFRV-VNTGGGQPVELMTFVETVEKAVGRPAIHN 288
Query: 293 HIPGPEGVRGRN-SDNTLIKEKLGWAPSMKLKDGLRITYFWIKEQIEKEKT 342
+P +G R + L++ G+ PS+ +++G+ W + + T
Sbjct: 289 MLPMQQGDVPRTFASPDLLEALTGFKPSVSVEEGVARFVEWYDQNYRRAHT 339
>sp|A0R5C5|GALE_MYCS2 UDP-glucose 4-epimerase OS=Mycobacterium smegmatis (strain ATCC
700084 / mc(2)155) GN=MSMEG_6142 PE=1 SV=2
Length = 313
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 86/321 (26%), Positives = 140/321 (43%), Gaps = 19/321 (5%)
Query: 27 LRISVTGAGGFIASHIARRLKSEGHYIIASD-----WKKNEHMTEDMFCHEFHLVDLRVM 81
+R VTGA GFI S + RL ++GH ++ D +N H E+ EF D+
Sbjct: 1 MRTLVTGAAGFIGSTLVDRLLADGHGVVGLDDLSSGRAENLHSAENSDKFEFVKADIVDA 60
Query: 82 D-NCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYA 140
D L + +F+LAA + + + N + + + EA+R++GV++ +
Sbjct: 61 DLTGLLAEFKPEVIFHLAAQISVKRSVD-DPPFDATVNVVGTVRLAEAARLAGVRKVVHT 119
Query: 141 SS-ACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRF 199
SS +Y T + S+ P P Y K+A E Y + ++C
Sbjct: 120 SSGGSVY------GTPPAYPTSEDMPVNPASPYAAGKVAGEVYLNMYRNLYDLDCSHIAP 173
Query: 200 HNIYGPFGTWKGMEKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECVEGVLRL-TKS 258
N+YGP G E A +AL + +++GDG TR + F+D+ V+ +R +
Sbjct: 174 ANVYGPRQDPHG-EAGVVAIFSEALLAGRTTKIFGDGSDTRDYVFVDDVVDAFVRAGGPA 232
Query: 259 DFREPVNIGSDEMVSMNEM-AEIVLSFEDKKLPIHHIPGPEGVRGRNSDNTLIKEKLGWA 317
+ N+G+ S E+ I + P H P +R DNT +E LGW
Sbjct: 233 GGGQRFNVGTGVETSTRELHTAIAGAVGAPDEPEFHPPRLGDLRRSRLDNTRAREVLGWQ 292
Query: 318 PSMKLKDGLRIT--YFWIKEQ 336
P + L +G+ T +F K Q
Sbjct: 293 PQVALAEGIAKTVEFFRNKSQ 313
>sp|Q58455|Y1055_METJA Uncharacterized protein MJ1055 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1055 PE=3 SV=1
Length = 326
Score = 79.3 bits (194), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 82/325 (25%), Positives = 148/325 (45%), Gaps = 28/325 (8%)
Query: 29 ISVTGAGGFIASHIARRLKSE-------------GHYIIASDWKKNEHMTEDMFCHEFHL 75
I VTG+ GFI H+++ L +Y K+NE + ++ + F
Sbjct: 6 ILVTGSAGFIGFHLSKYLMDNYEDLKVIGIDNLNNYYNPVLKEKRNE-ILKNYENYTFIK 64
Query: 76 VDLRVMDNCLKVTKG--VDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISG 133
+D D+ ++ K +D + +L A G +Q+ + I +N M + N+ E +R
Sbjct: 65 LDFSDWDDLVENLKDKEIDLIVHLGAQAGVRYSLQNPWAYIK-SNEMGTLNIFEFARRFD 123
Query: 134 VKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIE 193
+++ YASS+ +Y ++ + E D +P Y K ++E + Y +GI+
Sbjct: 124 IEKVVYASSSSVYGGNRK----IPFSEDDR-VDKPISLYASTKRSNELMAHVYHHLYGIK 178
Query: 194 CRVGRFHNIYGPFGTWKGMEKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECVEGVL 253
RF +YG +G + A F + L + E++ G R FT+I + V+G+L
Sbjct: 179 MIGLRFFTVYGEYGR---PDMAYFKFAKNILLGKE-IEVYNYGNMERDFTYISDVVDGIL 234
Query: 254 RLTKSDF-REPVNIGSDEMVSMNEMAEIVLSFEDKKLPIHHIPGPEGVRGRNSDNTLIKE 312
R K DF E N+G+ + V + E++ + +KK +P +G R + E
Sbjct: 235 RAIKKDFDYEIFNLGNSKPVKLMYFIELIEKYLNKKAKKKFLPMQDGDVLRTYADLSKSE 294
Query: 313 K-LGWAPSMKLKDGLRITYFWIKEQ 336
K LG+ P + +++GL+ W E
Sbjct: 295 KLLGYKPKVTIEEGLKRFCNWFLEN 319
>sp|O81312|GAE3_ARATH UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thaliana GN=GAE3 PE=2
SV=1
Length = 430
Score = 78.6 bits (192), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 84/335 (25%), Positives = 143/335 (42%), Gaps = 41/335 (12%)
Query: 29 ISVTGAGGFIASHIARRLKSEGHYIIASD----------WKKNEHMTE--DMFCHEFHLV 76
+ VTGA GF+ +H++ LK G ++ D + + + E +F E +
Sbjct: 93 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKRARQALLERSGVFVVEGDIN 152
Query: 77 DLRVMDNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVK- 135
D ++ +V HV +LAA G+ + N S +++N N+LE + + +
Sbjct: 153 DAALLKKLFEVVP-FTHVMHLAAQ-AGVRYAMENPSSYVHSNIAGFVNLLEVCKSANPQP 210
Query: 136 RFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECR 195
+ASS+ +Y L T V E D +P Y K A EE+ Y +G+
Sbjct: 211 AIVWASSSSVY----GLNTKVPFSEKDR-TDQPASLYAATKKAGEEIAHTYNHIYGLSLT 265
Query: 196 VGRFHNIYGPFGTWKGMEKAPAAFCRKAL--TSTDKFEMWGDGLQTRSFTFIDECVEGVL 253
RF +YGP W + A F R L + FE G R FT+ID+ V+G L
Sbjct: 266 GLRFFTVYGP---WGRPDMAYFFFTRDILKGKAISIFEGVNHGTVARDFTYIDDIVKGCL 322
Query: 254 -------RLTKSDFREP-------VNIGSDEMVSMNEMAEIV--LSFEDKKLPIHHIPGP 297
+ T S ++ N+G+ V + ++ I+ L K I +P
Sbjct: 323 GALDTAEKSTGSGGKKRGAAQLRVFNLGNTSPVPVTDLVTILERLLKVKAKRNIMKLPRN 382
Query: 298 EGVRGRNSDNTLIKEKLGWAPSMKLKDGLRITYFW 332
V+ +++ + + +LG+ P+ L+ GL+ W
Sbjct: 383 GDVQFTHANISSAQRELGYKPTTDLQTGLKKFARW 417
>sp|Q9LPC1|GAE2_ARATH UDP-glucuronate 4-epimerase 2 OS=Arabidopsis thaliana GN=GAE2 PE=2
SV=1
Length = 434
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 83/335 (24%), Positives = 140/335 (41%), Gaps = 41/335 (12%)
Query: 29 ISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTE------------DMFCHEFHLV 76
+ VTGA GF+ +H++ LK G ++ D + + T +F E +
Sbjct: 94 VLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDTSLKRSRQALLERSGVFIVEGDIN 153
Query: 77 DLRVMDNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVK- 135
DL ++ +V HV +LAA G+ + N +++N N+LE + + +
Sbjct: 154 DLSLLKKLFEVVP-FTHVMHLAAQ-AGVRYAMENPGSYVHSNIAGFVNLLEVCKSANPQP 211
Query: 136 RFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECR 195
+ASS+ +Y L T V E D +P Y K A EE+ Y +G+
Sbjct: 212 AIVWASSSSVY----GLNTKVPFSEKDR-TDQPASLYAATKKAGEEIAHTYNHIYGLSLT 266
Query: 196 VGRFHNIYGPFGTWKGMEKAPAAFCRKAL--TSTDKFEMWGDGLQTRSFTFIDECVEGVL 253
RF +YGP W + A F R L + FE G R FT+ID+ V+G L
Sbjct: 267 GLRFFTVYGP---WGRPDMAYFFFTRDILKGKAISIFEGANHGTVARDFTYIDDIVKGCL 323
Query: 254 -------RLTKSDFREP-------VNIGSDEMVSMNEMAEIV--LSFEDKKLPIHHIPGP 297
+ T S ++ N+G+ V + ++ I+ L K + +P
Sbjct: 324 GALDTAEKSTGSGGKKRGAAQLRVFNLGNTSPVPVTDLVSILERLLKVKAKRNMMKLPRN 383
Query: 298 EGVRGRNSDNTLIKEKLGWAPSMKLKDGLRITYFW 332
V +++ + + + G+ PS L+ GL+ W
Sbjct: 384 GDVPFTHANISSAQREFGYKPSTDLQTGLKKFVRW 418
>sp|Q6MWV3|GALE_MYCTU UDP-glucose 4-epimerase OS=Mycobacterium tuberculosis GN=galE1 PE=3
SV=1
Length = 314
Score = 76.3 bits (186), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 88/334 (26%), Positives = 142/334 (42%), Gaps = 47/334 (14%)
Query: 27 LRISVTGAGGFIASHIARRLKSEGHYII-----ASDWKKNEHMTEDMFCHEFHLVDLRVM 81
+R VTGA GFI S + RL ++GH ++ A+ N D H F D+
Sbjct: 1 MRALVTGAAGFIGSTLVDRLLADGHSVVGLDNFATGRATNLEHLADNSAHVFVEADIVTA 60
Query: 82 D-NCLKVTKGVDHVFNLAADMG---GMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRF 137
D + + + VF+LAA + + Q + +V N + + + EA+R +GV++
Sbjct: 61 DLHAILEQHRPEVVFHLAAQIDVRRSVADPQFDAAV----NVIGTVRLAEAARQTGVRKI 116
Query: 138 FYASS-ACIY---PEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIE 193
+ SS IY PE+ ET P +P Y K+A E + +G++
Sbjct: 117 VHTSSGGSIYGTPPEYPTPET---------APTDPASPYAAGKVAGEIYLNTFRHLYGLD 167
Query: 194 CRVGRFHNIYGPFGTWKGMEKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDEC----- 248
C N+YGP G A F +AL S ++GDG TR + F+D+
Sbjct: 168 CSHIAPANVYGPRQDPHGEAGVVAIFA-QALLSGKPTRVFGDGTNTRDYVFVDDVVDAFV 226
Query: 249 -----VEGVLRLTKSDFREPVNIGSDEMVSMNEM-AEIVLSFEDKKLPIHHIPGPEGVRG 302
V G LR NIG+ + S ++ + + + P H P ++
Sbjct: 227 RVSADVGGGLRF---------NIGTGKETSDRQLHSAVAAAVGGPDDPEFHPPRLGDLKR 277
Query: 303 RNSDNTLIKEKLGWAPSMKLKDGLRITYFWIKEQ 336
D L + LGW P ++L DG+R T + + +
Sbjct: 278 SCLDIGLAERVLGWRPQIELADGVRRTVEYFRHK 311
>sp|Q9SYM5|RHM1_ARATH Probable rhamnose biosynthetic enzyme 1 OS=Arabidopsis thaliana
GN=RHM1 PE=1 SV=1
Length = 669
Score = 75.5 bits (184), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 85/325 (26%), Positives = 145/325 (44%), Gaps = 24/325 (7%)
Query: 29 ISVTGAGGFIASHIARRL-KSEGHYIIAS----DWKKN-EHMTEDMFCHEFHLV--DLRV 80
I +TGA GFIASH+A RL +S Y I D+ N +++ F V D+
Sbjct: 9 ILITGAAGFIASHVANRLIRSYPDYKIVVLDKLDYCSNLKNLNPSKHSPNFKFVKGDIAS 68
Query: 81 MD--NCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISG-VKRF 137
D N L +T+G+D + + AA N NN + +LEA +++G ++RF
Sbjct: 69 ADLVNHLLITEGIDTIMHFAAQTHVDNSF-GNSFEFTKNNIYGTHVLLEACKVTGQIRRF 127
Query: 138 FYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRVG 197
+ S+ +Y E + + + +A P + Y K +E L Y + +G+
Sbjct: 128 IHVSTDEVYGE---TDEDALVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITT 184
Query: 198 RFHNIYGPFGTWKGMEKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECVEGV-LRLT 256
R +N+YGP + EK F A+ + GDG RS+ + ++ E + L
Sbjct: 185 RGNNVYGPN---QFPEKLIPKFILLAMRG-QVLPIHGDGSNVRSYLYCEDVAEAFEVVLH 240
Query: 257 KSDFREPVNIGSDEMVSMNEMAEIVLSF--EDKKLPIHHIPG-PEGVRGRNSDNTLIKEK 313
K + NIG+ + +N++A+ + D + I + P + D+ +K K
Sbjct: 241 KGEVGHVYNIGTKKERRVNDVAKDICKLFNMDPEANIKFVDNRPFNDQRYFLDDQKLK-K 299
Query: 314 LGWAPSMKLKDGLRITYFWIKEQIE 338
LGW+ ++GL+ T W + E
Sbjct: 300 LGWSERTTWEEGLKKTMDWYTQNPE 324
>sp|Q9LH76|RHM3_ARATH Probable rhamnose biosynthetic enzyme 3 OS=Arabidopsis thaliana
GN=RHM3 PE=1 SV=1
Length = 664
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 87/325 (26%), Positives = 142/325 (43%), Gaps = 24/325 (7%)
Query: 29 ISVTGAGGFIASHIARRL-KSEGHYIIAS----DWKKN-EHMTEDMFCHEFHLV--DLRV 80
I +TGA GFIASH+A RL +S Y I D+ N +++ F V D+
Sbjct: 9 ILITGAAGFIASHVANRLVRSYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIAS 68
Query: 81 MD--NCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISG-VKRF 137
D N L +T+ +D + + AA N NN + +LEA +++G ++RF
Sbjct: 69 ADLVNYLLITEEIDTIMHFAAQTHVDNSF-GNSFEFTKNNIYGTHVLLEACKVTGQIRRF 127
Query: 138 FYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRVG 197
+ S+ +Y E + + S+ +A P + Y K +E L Y + +G+
Sbjct: 128 IHVSTDEVYGE---TDEDASVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITT 184
Query: 198 RFHNIYGPFGTWKGMEKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECVEGV-LRLT 256
R +N+YGP + EK F A+ + GDG RS+ + ++ E + L
Sbjct: 185 RGNNVYGPN---QFPEKLIPKFILLAMNGK-PLPIHGDGSNVRSYLYCEDVAEAFEVVLH 240
Query: 257 KSDFREPVNIGSDEMVSMNEMAEIV--LSFEDKKLPIHHIPG-PEGVRGRNSDNTLIKEK 313
K + NIG+ + ++A + L D I ++ P + D+ +K K
Sbjct: 241 KGEVNHVYNIGTTRERRVIDVANDISKLFGIDPDSTIQYVENRPFNDQRYFLDDQKLK-K 299
Query: 314 LGWAPSMKLKDGLRITYFWIKEQIE 338
LGW ++GLR T W E E
Sbjct: 300 LGWCERTNWEEGLRKTMEWYTENPE 324
>sp|Q9STI6|GAE5_ARATH UDP-glucuronate 4-epimerase 5 OS=Arabidopsis thaliana GN=GAE5 PE=2
SV=1
Length = 436
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 89/359 (24%), Positives = 152/359 (42%), Gaps = 45/359 (12%)
Query: 8 YGAYTYEELEREPYWPSEK--LRISVTGAGGFIASHIARRLKSEGHYIIASD-------- 57
YG +E+ R+ P L + VTGA GF+ +H++ L+ G ++ D
Sbjct: 75 YGGSHWEKQVRKSARPRSHGGLTVLVTGASGFVGTHVSIALRRRGDGVLGLDNFNRYYDP 134
Query: 58 --WKKNEHMTE--DMFCHEFHLVDLRVMDNCLKVTKGVDHVFNLAADMGGMGFIQSNHSV 113
+ + + E +F E + D ++ V HV +LAA G +Q+ S
Sbjct: 135 KLKRARQGLLERSGVFVVEGDINDAVLLRKLFDVVL-FTHVMHLAAQAGVRYAMQNPGSY 193
Query: 114 IMYNNTMISF-NMLEASRISGVK-RFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDA 171
+ N+ + F N+LE S+ + + +ASS+ +Y L + V E D +P
Sbjct: 194 V--NSNIAGFVNLLEVSKSANPQPAIVWASSSSVY----GLNSKVPFSEKDR-TDQPASL 246
Query: 172 YGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGMEKAPAAFCRKAL--TSTDK 229
Y K A E + Y +G+ RF +YGP W + A F + L +
Sbjct: 247 YAATKKAGEGIAHTYNHIYGLSLTGLRFFTVYGP---WGRPDMAYFFFTKDILKGKTITV 303
Query: 230 FEMWGDGLQTRSFTFIDECVEGVL-------RLTKSDFREP-------VNIGSDEMVSMN 275
FE G R FT+ID+ V+G L + T S ++ N+G+ V +
Sbjct: 304 FESPDKGSVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKGPAMFRIYNLGNTSPVPVT 363
Query: 276 EMAEIVLSFEDKKLPIHHIPGPEG--VRGRNSDNTLIKEKLGWAPSMKLKDGLRITYFW 332
++ I+ K +P P V +++ TL + +LG+ P++ L+ GL+ W
Sbjct: 364 KLVTILEKLLKMKAKKKIMPLPRNGDVEFTHANITLAQAELGYKPAVDLETGLKKFVKW 422
>sp|Q9LIS3|GAE6_ARATH UDP-glucuronate 4-epimerase 6 OS=Arabidopsis thaliana GN=GAE6 PE=1
SV=1
Length = 460
Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 83/358 (23%), Positives = 145/358 (40%), Gaps = 49/358 (13%)
Query: 27 LRISVTGAGGFIASHIARRLKSEGHYIIASD----------WKKNEHMTE--DMFCHEFH 74
L + VTGA GF+ SH + L+ G ++ D + + + E +F E
Sbjct: 112 LSVLVTGAAGFVGSHCSLALRKRGDGVLGFDNFNDYYDPSLKRARQELLEKQQVFIVEGD 171
Query: 75 LVDLRVMDNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGV 134
L D ++ V H+ +LAA G+ + N + +N N+LE ++ +
Sbjct: 172 LNDGPLLRKLFDVVP-FTHILHLAA-QAGVRYAMKNPQSYIASNIAGFVNLLEVAKAANP 229
Query: 135 K-RFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIE 193
+ +ASS+ +Y L T E + +P Y K A EE+ Y +G+
Sbjct: 230 QPAIVWASSSSVY----GLNTENPFSE-EHRTDQPASLYAATKKAGEEIAHTYNHIYGLS 284
Query: 194 CRVGRFHNIYGPFGTWKGMEKAPAAFCRKAL--TSTDKFEMWGDGLQTRSFTFIDECVEG 251
RF +YGP W + A F + L S D + + R FT+ID+ V+G
Sbjct: 285 LTGLRFFTVYGP---WGRPDMAYFFFTKDILHGKSIDIYRTQDNQEVARDFTYIDDIVKG 341
Query: 252 VL---------------RLTKSDFREPVNIGSDEMVSMNEMAEIVLSFEDKKLPIHHIPG 296
+ + ++ R N+G+ V + + I+ K H I
Sbjct: 342 CVGALDTAEKSTGSGGKKRGQAQLRV-YNLGNTSPVPVGRLVSILEGLLGTKAKKHLIKM 400
Query: 297 PEG--VRGRNSDNTLIKEKLGWAPSMKLKDGLR------ITYFWIKEQIEKEKTQGID 346
P V +++ +L + G+ P+ L GLR + Y+ I+ +++KE + D
Sbjct: 401 PRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVGYYGIQPRVKKETSHAED 458
>sp|Q04973|VIPB_SALTI Vi polysaccharide biosynthesis protein VipB/TviC OS=Salmonella
typhi GN=vipB PE=3 SV=1
Length = 348
Score = 72.0 bits (175), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 83/347 (23%), Positives = 143/347 (41%), Gaps = 41/347 (11%)
Query: 13 YEELEREPYWPSEKLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKN--EHMTEDMFC 70
YEEL + + R +TG GFI S + L +I D +H +D+
Sbjct: 4 YEELRTKLVLAPK--RWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRT 61
Query: 71 H-------EFHLV--DLRVMDNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMI 121
F + D+R +C K K VD+V + AA +G + +S I N+ I
Sbjct: 62 SVSEEQWSRFIFIQGDIRKFTDCQKACKNVDYVLHQAA-LGSVP--RSLKDPIATNSANI 118
Query: 122 S--FNMLEASRISGVKRFFYASSACIY---PEFKQLETNVSLKESDAWPAEPQDAYGLEK 176
NML A+R + V F YA+S+ Y P+ ++E + P Y + K
Sbjct: 119 DGFLNMLTAARDAHVSSFTYAASSSTYGDHPDLPKIEERI---------GRPLSPYAVTK 169
Query: 177 LASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGMEKAPAAFCRKALTSTDKFEMWGDG 236
+E + + + R+ N++G G A +L + + GDG
Sbjct: 170 YVNELYADVFARSYEFNAIGLRYFNVFGRRQNPNGAYSAVIPRWILSLLKDEPIYINGDG 229
Query: 237 LQTRSFTFIDECVEG-VLRLTKSDF---REPVNIGSDEMVSMNEMAEIV---LSF----E 285
+R F +I+ ++ +L T +D + N+ + S+NE+ ++ L+ +
Sbjct: 230 STSRDFCYIENVIQANLLSATTNDLASKNKVYNVAVGDRTSLNELYYLIRDGLNLWRNEQ 289
Query: 286 DKKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPSMKLKDGLRITYFW 332
+ PI+ V+ +D T IK L + P +K+GL+ T W
Sbjct: 290 SRAEPIYKDFRDGDVKHSQADITKIKTFLSYEPEFDIKEGLKQTLKW 336
>sp|Q9LPG6|RHM2_ARATH Probable rhamnose biosynthetic enzyme 2 OS=Arabidopsis thaliana
GN=RHM2 PE=1 SV=1
Length = 667
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 84/328 (25%), Positives = 142/328 (43%), Gaps = 30/328 (9%)
Query: 29 ISVTGAGGFIASHIARRL-KSEGHYIIA--------SDWKKNEHMTEDMFCHEFHLV--D 77
I +TGA GFIASH+A RL ++ Y I SD K ++ F V D
Sbjct: 11 ILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSDLK---NLDPSFSSPNFKFVKGD 67
Query: 78 LRVMD--NCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISG-V 134
+ D N L +T+ +D + + AA N NN + +LEA +++G +
Sbjct: 68 IASDDLVNYLLITENIDTIMHFAAQTHVDNSF-GNSFEFTKNNIYGTHVLLEACKVTGQI 126
Query: 135 KRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIEC 194
+RF + S+ +Y E + + ++ +A P + Y K +E L Y + +G+
Sbjct: 127 RRFIHVSTDEVYGE---TDEDAAVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPV 183
Query: 195 RVGRFHNIYGPFGTWKGMEKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECVEGV-L 253
R +N+YGP + EK F A+ S + GDG RS+ + ++ E +
Sbjct: 184 ITTRGNNVYGPN---QFPEKMIPKFILLAM-SGKPLPIHGDGSNVRSYLYCEDVAEAFEV 239
Query: 254 RLTKSDFREPVNIGSDEMVSMNEMAEIVLSF--EDKKLPIHHIPG-PEGVRGRNSDNTLI 310
L K + N+G+ + ++A + +D + I + P + D+ +
Sbjct: 240 VLHKGEIGHVYNVGTKRERRVIDVARDICKLFGKDPESSIQFVENRPFNDQRYFLDDQKL 299
Query: 311 KEKLGWAPSMKLKDGLRITYFWIKEQIE 338
K KLGW +DGL+ T W + E
Sbjct: 300 K-KLGWQERTNWEDGLKKTMDWYTQNPE 326
>sp|P29782|RMLB_STRGR dTDP-glucose 4,6-dehydratase OS=Streptomyces griseus GN=strE PE=1
SV=1
Length = 328
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 82/318 (25%), Positives = 129/318 (40%), Gaps = 31/318 (9%)
Query: 31 VTGAGGFIASHIARRLKSEGH----YIIASDWKKNEHMTEDMFCHEFH-LVDLRVMDNC- 84
VTGA GFI S R L G + A D +++ H D C
Sbjct: 7 VTGAAGFIGSQYVRTLLGPGGPPDVVVTALDALTYAGNPDNLAAVRGHPRYRFERGDICD 66
Query: 85 ---LKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYAS 141
+V G D V +LAA+ + + SV + N + +L+A+ GV F S
Sbjct: 67 APGRRVMAGQDQVVHLAAE-SHVDRSLLDASVFVRTNVHGTQTLLDAATRHGVASFVQVS 125
Query: 142 SACIYPEFKQLETNVSLKESDAW----PAEPQDAYGLEKLASEELCKHYTKDFGIECRVG 197
+ +Y E +W P P Y K + + L + G++ RV
Sbjct: 126 TDEVYGSL----------EHGSWTEDEPLRPNSPYSASKASGDLLALAHHVSHGLDVRVT 175
Query: 198 RFHNIYGPFGTWKGMEKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECVEGVLRL-T 256
R N YGP + EK F L + ++GDGL R + +D+ V G+ + T
Sbjct: 176 RCSNNYGPR---QFPEKLIPRFI-TLLMDGHRVPLYGDGLNVREWLHVDDHVRGIEAVRT 231
Query: 257 KSDFREPVNIGSDEMVSMNEMAEIVLSFEDKKL-PIHHIPGPEGVRGRNS-DNTLIKEKL 314
+ NIG +S E+ ++L + ++ +G R + D+T I+ +L
Sbjct: 232 RGRAGRVYNIGGGATLSNKELVGLLLEAAGADWGSVEYVEDRKGHDRRYAVDSTRIQREL 291
Query: 315 GWAPSMKLKDGLRITYFW 332
G+AP++ L DGL T W
Sbjct: 292 GFAPAVDLADGLAATVAW 309
>sp|O95455|TGDS_HUMAN dTDP-D-glucose 4,6-dehydratase OS=Homo sapiens GN=TGDS PE=2 SV=1
Length = 350
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 84/341 (24%), Positives = 147/341 (43%), Gaps = 45/341 (13%)
Query: 28 RISVTGAGGFIASH-IARRLKSEGHYIIAS----DW------------KKNEHMTEDMFC 70
R+ VTG GFIASH I ++ +Y+I + D+ K+N + C
Sbjct: 19 RVLVTGGAGFIASHMIVSLVEDYPNYMIINLDKLDYCASLKNLETISNKQNYKFIQGDIC 78
Query: 71 HEFHLVDLRVMDNCLKVTKGVDHVFNLAADMG-GMGFIQSNHSVIMYNNTMISFNMLEAS 129
+ H V L L T+ +D V + AA + F+++ Y N + ++ A+
Sbjct: 79 -DSHFVKL------LFETEKIDIVLHFAAQTHVDLSFVRAFE--FTYVNVYGTHVLVSAA 129
Query: 130 RISGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKD 189
+ V++F Y S+ +Y ++ + ++ P +P + Y K A+E + Y +
Sbjct: 130 HEARVEKFIYVSTDEVY------GGSLDKEFDESSPKQPTNPYASSKAAAECFVQSYWEQ 183
Query: 190 FGIECRVGRFHNIYGPFGTWKGMEKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECV 249
+ + R N+YGP + EK F L K + G GLQTR+F + + V
Sbjct: 184 YKFPVVITRSSNVYGPH---QYPEKVIPKFI-SLLQHNRKCCIHGSGLQTRNFLYATDVV 239
Query: 250 EGVLR-LTKSDFREPVNIGSDEMVSMNEMA-EIVLSFEDKKLPIHHIPGPEGVRGRNSDN 307
E L L K E NIG++ +S+ ++A E++ ++ + V R +++
Sbjct: 240 EAFLTVLKKGKPGEIYNIGTNFEMSVVQLAKELIQLIKETNSESEMENWVDYVNDRPTND 299
Query: 308 TLIKEK------LGWAPSMKLKDGLRITYFWIKEQIEKEKT 342
K LGW P + K+G++ T W +E K
Sbjct: 300 MRYPMKSEKIHGLGWRPKVPWKEGIKKTIEWYRENFHNWKN 340
>sp|P95780|RMLB_STRMU dTDP-glucose 4,6-dehydratase OS=Streptococcus mutans serotype c
(strain ATCC 700610 / UA159) GN=rmlB PE=1 SV=2
Length = 348
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 85/333 (25%), Positives = 145/333 (43%), Gaps = 29/333 (8%)
Query: 24 SEKLRISVTGAGGFIAS---HIARRLKSEGHYIIASD--WKKNEHMTEDMFCHEFHLVDL 78
+E I VTG GFI S H + H + + N E++ LV
Sbjct: 2 TEYKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNRANLEEILGDRVELVVG 61
Query: 79 RVMDNCL--KVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKR 136
+ D+ L K+ D + + AA+ ++ + S +Y N + ++ +LEA+R + R
Sbjct: 62 DIADSELVDKLAAKADAIVHYAAESHNDNSLK-DPSPFIYTNFVGTYILLEAARKYDI-R 119
Query: 137 FFYASSACIYPEFKQLETNVSLKES--DAWPAE----PQDAYGLEKLASEELCKHYTKDF 190
F + S+ +Y + E E + + AE P Y K AS+ + K + + F
Sbjct: 120 FHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETKYNPSSPYSSTKAASDLIVKAWVRSF 179
Query: 191 GIECRVGRFHNIYGPFGTWKGMEKAPAAFCRKALT---STDKFEMWGDGLQTRSFTFIDE 247
G++ + N YGP+ + +EK F + +T S K +++G+G R + ++
Sbjct: 180 GVKATISNCSNNYGPY---QHIEK----FIPRQITNILSGIKPKLYGEGKNVRDWIHTND 232
Query: 248 CVEGVLR-LTKSDFREPVNIGSDEMVSMNEMAEIVL-SFEDKKLPIHHIPGPEGVRGRNS 305
GV LTK E IG+D + E+ E++L K H+ G R +
Sbjct: 233 HSTGVWAILTKGRIGETYLIGADGEKNNKEVLELILEKMSQPKNAYDHVTDRAGHDLRYA 292
Query: 306 -DNTLIKEKLGWAPSM-KLKDGLRITYFWIKEQ 336
D+T ++E+LGW P ++GL T W E
Sbjct: 293 IDSTKLREELGWKPQFTNFEEGLEDTIKWYTEH 325
>sp|Q9M0B6|GAE1_ARATH UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thaliana GN=GAE1 PE=1
SV=1
Length = 429
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 81/342 (23%), Positives = 142/342 (41%), Gaps = 45/342 (13%)
Query: 24 SEKLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEH------------MTEDMFCH 71
S + + VTGA GF+ SH++ L+ G ++ D N + + +F
Sbjct: 85 SGGISVLVTGATGFVGSHVSLALRKRGDGVVGLDNFNNYYDPSLKRARRSLLSSRGIFVV 144
Query: 72 EFHLVDLRVMDNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRI 131
E L D +++ V HV +LAA G+ + N +++N N+LE +
Sbjct: 145 EGDLNDAKLLAKLFDVV-AFTHVMHLAAQ-AGVRYALENPQSYVHSNIAGLVNLLEICKA 202
Query: 132 SGVK-RFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDF 190
+ + +ASS+ +Y L V ESD +P Y K A EE+ Y +
Sbjct: 203 ANPQPAIVWASSSSVY----GLNEKVPFSESDR-TDQPASLYAATKKAGEEITHTYNHIY 257
Query: 191 GIECRVGRFHNIYGPFGTWKGMEKAPAAFCRKALTSTDKFEMWGDGL--QTRSFTFIDEC 248
G+ RF +YGP W + A +F R L G R FT+ID+
Sbjct: 258 GLAITGLRFFTVYGP---WGRPDMAYFSFTRNILQGKPITIYRGKNRVDLARDFTYIDDI 314
Query: 249 VEGVL---------------RLTKSDFREPVNIGSDEMVSMNEMAEIV---LSFEDKKLP 290
V+G L + + +R N+G+ V++ + +I+ L + K+
Sbjct: 315 VKGCLGSLDSSGKSTGSGGKKRGAAPYRI-FNLGNTSPVTVPILVDILEKHLKVKAKRNF 373
Query: 291 IHHIPGPEGVRGRNSDNTLIKEKLGWAPSMKLKDGLRITYFW 332
+ +PG V +++ + + + G+ P+ L+ GL+ W
Sbjct: 374 V-EMPGNGDVPFTHANISSARNEFGYKPTTDLETGLKKFVRW 414
>sp|Q59083|EXOB_AZOBR UDP-glucose 4-epimerase OS=Azospirillum brasilense GN=exoB PE=3
SV=1
Length = 348
Score = 68.9 bits (167), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 81/347 (23%), Positives = 141/347 (40%), Gaps = 50/347 (14%)
Query: 28 RISVTGAGGFIASHIARRLKSEGHYIIASD---WKKNEHMTEDMFCHEFHLVDLRVMDNC 84
R+ VTG G+I SH+ L G + D + E + + E + ++D
Sbjct: 10 RVLVTGGAGYIGSHVLHALTDAGIPAVTIDDLSAGRREAIPAAVPLVEGDIGSAELLDRV 69
Query: 85 LKVTKGVDHVFNLAADMGGMGFIQSNHSVI-----MYNNTMISFNMLEASRISGVKRFFY 139
++ + VD V + A G I SV+ NNT S +L A +G+ + +
Sbjct: 70 MRDHR-VDAVMHFA------GSIVVPESVVKPLDYYRNNTANSLTLLGACLRAGIDKVVF 122
Query: 140 ASSACIY--PEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRVG 197
+S+A +Y PE +V ++E DA P P + YG KL +E++ + G+ +
Sbjct: 123 SSTAAVYGAPE------SVPIRE-DA-PTVPINPYGASKLMTEQMLRDAGAAHGLRSVIL 174
Query: 198 RFHNIYGPFGTWKGMEKAPAA------FCRKALTSTDKFEMWG------DGLQTRSFTFI 245
R+ N+ G + + P A C+ L ++G DG R + +
Sbjct: 175 RYFNVAGADPAGRTGQATPVATHLIKVACQALLGRRPPLAIFGTDYDTPDGTCIRDYIHV 234
Query: 246 ----DECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFEDKKLP---IHHIPG-- 296
D V +L L + +N G S+ E+ + +++P PG
Sbjct: 235 SDLADAHVLALLHLRRGGGSLLMNCGYGRGASVREVVRTLEEVSGEQVPATFADRRPGDP 294
Query: 297 PEGVRGRNSDNTLIKEKLGWAPSMKLKDGLRITYFWIKEQIEKEKTQ 343
P+ V G + I+E+LGW P DG+ + + +E+ Q
Sbjct: 295 PQLVAGADR----IREQLGWVPKHDRLDGIVRSALSWERSLEQSVGQ 337
>sp|Q3J7X9|HLDD_NITOC ADP-L-glycero-D-manno-heptose-6-epimerase OS=Nitrosococcus oceani
(strain ATCC 19707 / NCIMB 11848) GN=hldD PE=3 SV=1
Length = 317
Score = 68.9 bits (167), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 75/320 (23%), Positives = 129/320 (40%), Gaps = 24/320 (7%)
Query: 29 ISVTGAGGFIASHIARRLKSEGH--YIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLK 86
I VTG GFI S+I + L G ++ D + E + + C + D + +K
Sbjct: 2 IIVTGGAGFIGSNIIKALNQGGREDILVVDDLTQGEKFSNLIDCEIWDYWDKQPFLQAIK 61
Query: 87 VTKGVDHVFNLAADMGGM-GFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACI 145
+ H + G + N +M NN S +L + F YASSA +
Sbjct: 62 AGEEFPHPVDAFIHQGACSATTEWNGRYMMENNFYYSKRLLHYCLERRIP-FLYASSAAV 120
Query: 146 YPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGP 205
Y ++ +E + A P++ YG K ++ + Y + R+ NIYGP
Sbjct: 121 YG------CGLTFQEHREFEA-PRNVYGYSKWLFDQYVRRYLPTASSQIVGLRYFNIYGP 173
Query: 206 FGTWKGMEKAPAAFCRKALTSTDKFEM------WGDGLQTRSFTFI-DECVEGVLRLTKS 258
KG + A L T + ++ + G Q R F + D + L
Sbjct: 174 REAHKGAMASVAYHAHCQLKETGRIKLFEGCDGYEHGEQRRDFVSVADAAAVNLWFLEHP 233
Query: 259 DFREPVNIGSDEMVSMNEMAEIVLSFEDKKLPIHHIPGPEGVRGR-----NSDNTLIKEK 313
+ N+G+ + + NE+A+ VL+F I +IP P+ +RGR +D ++E
Sbjct: 234 NQSGIFNVGTGQAQTFNEVAQAVLAFHGHG-EIEYIPFPDHLRGRYQSFTQADIHALREA 292
Query: 314 LGWAPSMKLKDGLRITYFWI 333
P ++ G++ W+
Sbjct: 293 GYAEPFALVEKGVKTYLDWL 312
>sp|A6QLW2|TGDS_BOVIN dTDP-D-glucose 4,6-dehydratase OS=Bos taurus GN=TGDS PE=2 SV=1
Length = 355
Score = 68.6 bits (166), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 84/341 (24%), Positives = 147/341 (43%), Gaps = 45/341 (13%)
Query: 28 RISVTGAGGFIASH-IARRLKSEGHYIIAS----DW------------KKNEHMTEDMFC 70
R+ VTG GFIASH I ++ +Y+I + D+ K+N + C
Sbjct: 19 RVLVTGGAGFIASHMIVSLVEDYPNYMIINLDKLDYCASLKNLETISNKQNYKFIQGDIC 78
Query: 71 HEFHLVDLRVMDNCLKVTKGVDHVFNLAADMG-GMGFIQSNHSVIMYNNTMISFNMLEAS 129
+ H V L L T+ +D V + AA + F+++ Y N + ++ A+
Sbjct: 79 -DSHFVKL------LFETEKIDIVLHFAAQTHVDLSFVRAFE--FTYVNVYGTHVLVSAA 129
Query: 130 RISGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKD 189
+ V++F Y S+ +Y ++ + ++ P +P + Y K A+E + Y +
Sbjct: 130 HEARVEKFIYVSTDEVY------GGSLDKEFDESSPKQPTNPYASSKAAAECFVQSYWEQ 183
Query: 190 FGIECRVGRFHNIYGPFGTWKGMEKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECV 249
+ + R N+YGP + EK F L K + G GLQTR+F + + V
Sbjct: 184 YKFPVVITRSSNVYGPH---QYPEKVIPKFI-SLLQHNRKCCIHGTGLQTRNFLYATDVV 239
Query: 250 EGVLR-LTKSDFREPVNIGSDEMVSMNEMA-EIVLSFEDKKLPIHHIPGPEGVRGRNSDN 307
E L L K E NIG++ +S+ ++A E++ ++ + V R +++
Sbjct: 240 EAFLTVLKKGKPGEIYNIGTNFEMSVLQLAKELIQLIKETNSESEMENWVDYVDDRPTND 299
Query: 308 TLIKEK------LGWAPSMKLKDGLRITYFWIKEQIEKEKT 342
K LGW P + K+G++ T W +E K
Sbjct: 300 MRYPMKSEKIHGLGWRPKVPWKEGIKKTIEWYRENFHNWKN 340
>sp|Q8VDR7|TGDS_MOUSE dTDP-D-glucose 4,6-dehydratase OS=Mus musculus GN=Tgds PE=2 SV=2
Length = 355
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 82/341 (24%), Positives = 146/341 (42%), Gaps = 45/341 (13%)
Query: 28 RISVTGAGGFIASHIARRLKSE-GHYIIAS----DW------------KKNEHMTEDMFC 70
R+ VTG GFIASH+ L + Y+I + D+ K+N + C
Sbjct: 19 RVLVTGGAGFIASHVIVSLVEDYPDYMIVNLDKLDYCASLKNLEPVSNKQNYKFIQGDIC 78
Query: 71 HEFHLVDLRVMDNCLKVTKGVDHVFNLAADMG-GMGFIQSNHSVIMYNNTMISFNMLEAS 129
+ H V L L + +D V + AA + F+++ Y N + ++ A+
Sbjct: 79 -DSHFVKL------LFEVEKIDIVLHFAAQTHVDLSFVRAFE--FTYVNVYGTHVLVNAA 129
Query: 130 RISGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKD 189
+GV++F Y S+ +Y ++ + ++ P +P + Y K A+E + Y +
Sbjct: 130 YEAGVEKFIYVSTDEVY------GGSLDQEFDESSPKQPTNPYASSKAAAECFVQSYWER 183
Query: 190 FGIECRVGRFHNIYGPFGTWKGMEKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECV 249
+ + R N+YGP + EK F L K + G GLQ R+F + + V
Sbjct: 184 YKFPVVITRSSNVYGPH---QYPEKVIPKFI-SLLQHNRKCCIHGSGLQRRNFLYAADVV 239
Query: 250 EGVLR-LTKSDFREPVNIGSDEMVSMNEMA-EIVLSFEDKKLPIHHIPGPEGVRGRNSDN 307
E L LTK + E NIG++ +S+ ++A E++ ++ + V R ++
Sbjct: 240 EAFLTVLTKGEPGEIYNIGTNFEMSVVQLAKELIQLIKETNSESETESWVDYVSDRPHND 299
Query: 308 TLIKEK------LGWAPSMKLKDGLRITYFWIKEQIEKEKT 342
K LGW P + ++G++ T W ++ K
Sbjct: 300 MRYPMKSEKIHSLGWKPKVPWEEGIKKTVEWYRKNFHNWKN 340
>sp|Q46Y59|HLDD_CUPPJ ADP-L-glycero-D-manno-heptose-6-epimerase OS=Cupriavidus
pinatubonensis (strain JMP134 / LMG 1197) GN=hldD PE=3
SV=1
Length = 331
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 90/351 (25%), Positives = 157/351 (44%), Gaps = 63/351 (17%)
Query: 27 LRISVTGAGGFIASHIARRLKSEG-HYIIASDWKKNEHMTEDMFCHEFH-LVDLRVMDNC 84
+ I VTGA GFI S++ + L + G ++I+A D N H + +FH LVD + D
Sbjct: 1 MTIIVTGAAGFIGSNLVKGLNARGENHIVAVD---NLHRAD-----KFHNLVDCEIRDYL 52
Query: 85 LK------VTKG----VDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGV 134
K +G V VF+L A M + + +M NN S ++E ++
Sbjct: 53 DKDDFLSRFERGEFGRVRAVFHLGACTDTM---EQDGRYLMENNYRYSKTLMELC-LAQD 108
Query: 135 KRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIEC 194
+F YASSA +Y E + S +E+ + P YG K ++ ++ D +
Sbjct: 109 TQFIYASSAAVYGE------SHSFREAREYE-RPLSVYGYSKFLFDQAVRNRL-DGALSQ 160
Query: 195 RVG-RFHNIYGPFGTWKGMEKAPAAFCRK--ALTSTDKFEMWGD------GLQTRSFTFI 245
VG R+ N+YGP K + + C++ + +++G+ G Q+ F I
Sbjct: 161 VVGLRYFNVYGPGEAHKA--RMASIVCQQFEQFRAEGTVKLFGEHGGHGPGCQSHDFVSI 218
Query: 246 DECVEGVLRLTKSDFREPV-NIGSDEMVSMNEMAEIV---LSFEDKKLP----------- 290
D+ V+ L R + N+GS S N++A +V L + K P
Sbjct: 219 DDVVKVNLFFLDHPRRSGIFNVGSGHARSFNDVACVVVNTLRAAEDKPPLALEELVQEGL 278
Query: 291 IHHIPGPEGVRGR-----NSDNTLIKEKLGWAPSMKLKDGLRITYFWIKEQ 336
+ ++ P+ +RGR SD++ ++E AP + +++G+ W+ E+
Sbjct: 279 LEYLRFPDALRGRYQSFTQSDSSRLREAGYTAPFVAMEEGVARYCQWLLER 329
>sp|B4EB34|HLDD_BURCJ ADP-L-glycero-D-manno-heptose-6-epimerase OS=Burkholderia cepacia
(strain J2315 / LMG 16656) GN=hldD PE=3 SV=1
Length = 330
Score = 65.5 bits (158), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 89/354 (25%), Positives = 149/354 (42%), Gaps = 67/354 (18%)
Query: 27 LRISVTGAGGFIASHIARRLKSEGHY-IIASDWKKNEHMTE-DMFCHEFHLVDLRVMDNC 84
+ + VTGA GFI ++I + L G IIA D ++T D F + LVD + D+
Sbjct: 1 MTLIVTGAAGFIGANIVKALNERGETRIIAVD-----NLTRADKFRN---LVDCEI-DDY 51
Query: 85 LKVTKGVDH-----------VFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISG 133
L T+ V+ VF+ A M +++ +M NN S +L+ + G
Sbjct: 52 LDKTEFVERFARGDFGKVRAVFHEGACSDTM---ETDGRYMMDNNFRYSRAVLDTCLMQG 108
Query: 134 VKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIE 193
+ F YASSA IY + ++E D P + YG K +++ + +
Sbjct: 109 TQ-FLYASSAAIYGGSTRF-----VEERDV--EAPLNVYGYSKFLFDQVIRRVLPSAKSQ 160
Query: 194 CRVGRFHNIYGPFGTWKGMEKAPAAFCRKALTSTDKFEMWGD------GLQTRSFTFIDE 247
R+ N+YGP T KG + A + K +++G+ G QTR F
Sbjct: 161 IAGFRYFNVYGPRETHKGRMASVAFHNFNQFRAEGKVKLFGEYNGYAPGEQTRDFV---- 216
Query: 248 CVEGVLRLTKSDFREP-----VNIGSDEMVSMNEMAEIV---LSFEDKKLP--------- 290
VE V ++ F P N+G+ N++A V L D + P
Sbjct: 217 SVEDVTKVNLFFFDHPEKSGIFNLGTGRAQPFNDIASTVVNTLRALDNQPPLTLAQQVEQ 276
Query: 291 --IHHIPGPEGVRGR-----NSDNTLIKEKLGWAPSMKLKDGLRITYFWIKEQI 337
I ++P P+ +RG+ +D T ++ AP + +++G+ W+ Q+
Sbjct: 277 GLIEYVPFPDALRGKYQCFTQADQTKLRAAGYDAPFLTVQEGVDRYVRWLSGQV 330
>sp|A0K5M9|HLDD_BURCH ADP-L-glycero-D-manno-heptose-6-epimerase OS=Burkholderia
cenocepacia (strain HI2424) GN=hldD PE=3 SV=1
Length = 330
Score = 65.1 bits (157), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 89/354 (25%), Positives = 148/354 (41%), Gaps = 67/354 (18%)
Query: 27 LRISVTGAGGFIASHIARRLKSEGHY-IIASDWKKNEHMTE-DMFCHEFHLVDLRVMDNC 84
+ + VTGA GFI ++I + L G IIA D ++T D F + LVD + D+
Sbjct: 1 MTLIVTGAAGFIGANIVKALNERGETRIIAVD-----NLTRADKFRN---LVDCEI-DDY 51
Query: 85 LKVTKGVDH-----------VFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISG 133
L T+ V+ VF+ A M +++ +M NN S +L+ G
Sbjct: 52 LDKTEFVERFARGDFGKVRAVFHEGACSDTM---ETDGRYMMDNNFRYSRAVLDTCLAQG 108
Query: 134 VKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIE 193
+ F YASSA IY + ++E D P + YG K +++ + +
Sbjct: 109 TQ-FLYASSAAIYGGSTRF-----VEERDV--EAPLNVYGYSKFLFDQVIRRVLPSAKSQ 160
Query: 194 CRVGRFHNIYGPFGTWKGMEKAPAAFCRKALTSTDKFEMWGD------GLQTRSFTFIDE 247
R+ N+YGP T KG + A + K +++G+ G QTR F
Sbjct: 161 IAGFRYFNVYGPRETHKGRMASVAFHNFNQFRAEGKVKLFGEYNGYAPGEQTRDFV---- 216
Query: 248 CVEGVLRLTKSDFREP-----VNIGSDEMVSMNEMAEIV---LSFEDKKLP--------- 290
VE V ++ F P N+G+ N++A V L D + P
Sbjct: 217 SVEDVTKVNLFFFDHPEKSGIFNLGTGRAQPFNDIASTVVNTLRALDNQAPLTLAQQVEQ 276
Query: 291 --IHHIPGPEGVRGR-----NSDNTLIKEKLGWAPSMKLKDGLRITYFWIKEQI 337
I ++P P+ +RG+ +D T ++ AP + +++G+ W+ Q+
Sbjct: 277 GLIEYVPFPDALRGKYQCFTQADQTKLRAAGYDAPFLTVQEGVDRYVRWLSGQV 330
>sp|B1JXS7|HLDD_BURCC ADP-L-glycero-D-manno-heptose-6-epimerase OS=Burkholderia
cenocepacia (strain MC0-3) GN=hldD PE=3 SV=1
Length = 330
Score = 65.1 bits (157), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 89/354 (25%), Positives = 148/354 (41%), Gaps = 67/354 (18%)
Query: 27 LRISVTGAGGFIASHIARRLKSEGHY-IIASDWKKNEHMTE-DMFCHEFHLVDLRVMDNC 84
+ + VTGA GFI ++I + L G IIA D ++T D F + LVD + D+
Sbjct: 1 MTLIVTGAAGFIGANIVKALNERGETRIIAVD-----NLTRADKFRN---LVDCEI-DDY 51
Query: 85 LKVTKGVDH-----------VFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISG 133
L T+ V+ VF+ A M +++ +M NN S +L+ G
Sbjct: 52 LDKTEFVERFARGDFGKVRAVFHEGACSDTM---ETDGRYMMDNNFRYSRAVLDTCLAQG 108
Query: 134 VKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIE 193
+ F YASSA IY + ++E D P + YG K +++ + +
Sbjct: 109 TQ-FLYASSAAIYGGSTRF-----VEERDV--EAPLNVYGYSKFLFDQVIRRVLPSAKSQ 160
Query: 194 CRVGRFHNIYGPFGTWKGMEKAPAAFCRKALTSTDKFEMWGD------GLQTRSFTFIDE 247
R+ N+YGP T KG + A + K +++G+ G QTR F
Sbjct: 161 IAGFRYFNVYGPRETHKGRMASVAFHNFNQFRAEGKVKLFGEYNGYAPGEQTRDFV---- 216
Query: 248 CVEGVLRLTKSDFREP-----VNIGSDEMVSMNEMAEIV---LSFEDKKLP--------- 290
VE V ++ F P N+G+ N++A V L D + P
Sbjct: 217 SVEDVTKVNLFFFDHPEKSGIFNLGTGRAQPFNDIASTVVNTLRALDNQAPLTLAQQVEQ 276
Query: 291 --IHHIPGPEGVRGR-----NSDNTLIKEKLGWAPSMKLKDGLRITYFWIKEQI 337
I ++P P+ +RG+ +D T ++ AP + +++G+ W+ Q+
Sbjct: 277 GLIEYVPFPDALRGKYQCFTQADQTKLRAAGYDAPFLTVQEGVDRYVRWLSGQV 330
>sp|Q1BY20|HLDD_BURCA ADP-L-glycero-D-manno-heptose-6-epimerase OS=Burkholderia
cenocepacia (strain AU 1054) GN=hldD PE=3 SV=1
Length = 330
Score = 65.1 bits (157), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 89/354 (25%), Positives = 148/354 (41%), Gaps = 67/354 (18%)
Query: 27 LRISVTGAGGFIASHIARRLKSEGHY-IIASDWKKNEHMTE-DMFCHEFHLVDLRVMDNC 84
+ + VTGA GFI ++I + L G IIA D ++T D F + LVD + D+
Sbjct: 1 MTLIVTGAAGFIGANIVKALNERGETRIIAVD-----NLTRADKFRN---LVDCEI-DDY 51
Query: 85 LKVTKGVDH-----------VFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISG 133
L T+ V+ VF+ A M +++ +M NN S +L+ G
Sbjct: 52 LDKTEFVERFARGDFGKVRAVFHEGACSDTM---ETDGRYMMDNNFRYSRAVLDTCLAQG 108
Query: 134 VKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIE 193
+ F YASSA IY + ++E D P + YG K +++ + +
Sbjct: 109 TQ-FLYASSAAIYGGSTRF-----VEERDV--EAPLNVYGYSKFLFDQVIRRVLPSAKSQ 160
Query: 194 CRVGRFHNIYGPFGTWKGMEKAPAAFCRKALTSTDKFEMWGD------GLQTRSFTFIDE 247
R+ N+YGP T KG + A + K +++G+ G QTR F
Sbjct: 161 IAGFRYFNVYGPRETHKGRMASVAFHNFNQFRAEGKVKLFGEYNGYAPGEQTRDFV---- 216
Query: 248 CVEGVLRLTKSDFREP-----VNIGSDEMVSMNEMAEIV---LSFEDKKLP--------- 290
VE V ++ F P N+G+ N++A V L D + P
Sbjct: 217 SVEDVTKVNLFFFDHPEKSGIFNLGTGRAQPFNDIASTVVNTLRALDNQAPLTLAQQVEQ 276
Query: 291 --IHHIPGPEGVRGR-----NSDNTLIKEKLGWAPSMKLKDGLRITYFWIKEQI 337
I ++P P+ +RG+ +D T ++ AP + +++G+ W+ Q+
Sbjct: 277 GLIEYVPFPDALRGKYQCFTQADQTKLRAAGYDAPFLTVQEGVDRYVRWLSGQV 330
>sp|A9ADU8|HLDD_BURM1 ADP-L-glycero-D-manno-heptose-6-epimerase OS=Burkholderia
multivorans (strain ATCC 17616 / 249) GN=hldD PE=3 SV=1
Length = 330
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 89/354 (25%), Positives = 148/354 (41%), Gaps = 67/354 (18%)
Query: 27 LRISVTGAGGFIASHIARRLKSEGHY-IIASDWKKNEHMTE-DMFCHEFHLVDLRVMDNC 84
+ + VTGA GFI ++I + L G IIA D ++T D F + LVD + D+
Sbjct: 1 MTLIVTGAAGFIGANIVKALNERGETRIIAVD-----NLTRADKFKN---LVDCEI-DDY 51
Query: 85 LKVTKGVDH-----------VFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISG 133
L T+ V+ VF+ A M +++ +M NN S +L+A G
Sbjct: 52 LDKTEFVERFARGDFGKVRAVFHEGACSDTM---ETDGRYMMDNNFRYSRAVLDACLAQG 108
Query: 134 VKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIE 193
+ F YASSA IY + S++ P + YG K +++ + + +
Sbjct: 109 AQ-FLYASSAAIYGGSTRFVEERSVEA-------PLNVYGYSKFLFDQVVRRVLPNAKSQ 160
Query: 194 CRVGRFHNIYGPFGTWKGMEKAPAAFCRKALTSTDKFEMWGD------GLQTRSFTFIDE 247
R+ N+YGP T KG + A + K +++G+ G QTR F
Sbjct: 161 IAGFRYFNVYGPRETHKGRMASVAFHNFNQFRAEGKVKLFGEYNGYAAGEQTRDFV---- 216
Query: 248 CVEGVLRLTKSDFREP-----VNIGSDEMVSMNEMAEIV---LSFEDKKLP--------- 290
VE V ++ F P N+G+ N++A V L D P
Sbjct: 217 SVEDVAKVNLFFFDHPEKSGIFNLGTGRAQPFNDIASTVVNTLRALDNLPPLTLAQQVEQ 276
Query: 291 --IHHIPGPEGVRGR-----NSDNTLIKEKLGWAPSMKLKDGLRITYFWIKEQI 337
I ++P P+ +RG+ +D T ++ AP + +++G+ W+ Q+
Sbjct: 277 GLIEYVPFPDALRGKYQCFTQADQTKLRAAGYDAPFLTVQEGVDRYVRWLSGQV 330
>sp|Q21Y60|HLDD_RHOFD ADP-L-glycero-D-manno-heptose-6-epimerase OS=Rhodoferax
ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118)
GN=hldD PE=3 SV=1
Length = 340
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 92/356 (25%), Positives = 145/356 (40%), Gaps = 67/356 (18%)
Query: 28 RISVTGAGGFIASHIARRLKSEG-HYIIASDWKKNEHMTEDMFCHEFHL-----VDLRVM 81
RI VTGA GFI S+I + L + G + IIA D + D F + HL VD V
Sbjct: 3 RIVVTGAAGFIGSNIIQGLNARGLNDIIAID----DLTQGDKFRNLAHLKISDYVDASVF 58
Query: 82 DNCLK--VTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFY 139
+ ++ VF+ A M +SN +M NN S N+ +A + G R Y
Sbjct: 59 YDLFANGAYGQIEAVFHEGACSDTM---ESNGKYMMDNNYATSVNLFQACQKRGA-RLLY 114
Query: 140 ASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLA-SEELCKHYTKDF--GIECRV 196
ASSA Y + + +E A+ P + YG KL + + + DF + +
Sbjct: 115 ASSAATYG------GSDTFREDPAFE-RPLNVYGYSKLLFDQRMRRECGNDFRRSVAGKT 167
Query: 197 G-----RFHNIYGPFGTWKGMEKAPAAFCRKALTSTDKFEMWGD------GLQTRSFTFI 245
G R+ N+YGP KG + A + K +++ D G Q R F FI
Sbjct: 168 GQVVGFRYFNVYGPHEQHKGRMASVAFHQFHQFQAEGKVKLFADYGGYAAGAQMRDFIFI 227
Query: 246 DECVEGVLRLTKSDFREP-----VNIGSDEMVSMNEMAEIVL---------------SFE 285
D+ V L F P N+G+ N++A V+ +
Sbjct: 228 DDVVAVNLWF----FDHPGVSGIFNLGTGRAQPFNDVASSVVNALRGLSGQTALGLEALT 283
Query: 286 DKKLPIHHIPGPEGVRGR-----NSDNTLIKEKLGWAPSMKLKDGLRITYFWIKEQ 336
+ L I +IP P+ +RG+ +D + ++ P ++ G+ W+ +Q
Sbjct: 284 EAGL-IEYIPFPDALRGKYQSYTQADLSALRATGCDHPFADVQTGVSNYVQWLAQQ 338
>sp|Q39IF3|HLDD_BURS3 ADP-L-glycero-D-manno-heptose-6-epimerase OS=Burkholderia sp.
(strain 383) GN=hldD PE=3 SV=1
Length = 330
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 89/354 (25%), Positives = 148/354 (41%), Gaps = 67/354 (18%)
Query: 27 LRISVTGAGGFIASHIARRLKSEGH-YIIASDWKKNEHMTE-DMFCHEFHLVDLRVMDNC 84
+ + VTGA GFI ++I + L G IIA D ++T D F +LVD + D+
Sbjct: 1 MTLIVTGAAGFIGANIVKALNERGETRIIAVD-----NLTRADKFR---NLVDCEI-DDY 51
Query: 85 LKVTKGVDH-----------VFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISG 133
L T+ V+ VF+ A M +++ +M NN S +L+ G
Sbjct: 52 LDKTEFVERFARGDFGKVRAVFHEGACSDTM---ETDGRYMMDNNFRYSRAVLDTCLAQG 108
Query: 134 VKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIE 193
+ F YASSA IY + ++E D P + YG K +++ + +
Sbjct: 109 TQ-FLYASSAAIYGGSTRF-----VEERDV--EAPLNVYGYSKFLFDQVIRRVLPTAKSQ 160
Query: 194 CRVGRFHNIYGPFGTWKGMEKAPAAFCRKALTSTDKFEMWGD------GLQTRSFTFIDE 247
R+ N+YGP T KG + A + K +++G+ G QTR F
Sbjct: 161 IAGFRYFNVYGPRETHKGRMASVAFHNFNQFRAEGKVKLFGEYNGYAPGEQTRDFV---- 216
Query: 248 CVEGVLRLTKSDFREP-----VNIGSDEMVSMNEMAEIV---LSFEDKKLP--------- 290
VE V ++ F P N+G+ N++A V L D + P
Sbjct: 217 SVEDVTKVNLFFFDHPEKSGIFNLGTGRAQPFNDIASTVVNTLRALDNQPPLTLAQQVEQ 276
Query: 291 --IHHIPGPEGVRGR-----NSDNTLIKEKLGWAPSMKLKDGLRITYFWIKEQI 337
I ++P P+ +RG+ +D T ++ AP + +++G+ W+ Q+
Sbjct: 277 GLIEYVPFPDALRGKYQCFTQADQTKLRAAGYDAPFLTVQEGVDRYVRWLSGQV 330
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 144,670,939
Number of Sequences: 539616
Number of extensions: 6205826
Number of successful extensions: 14658
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 271
Number of HSP's that attempted gapping in prelim test: 14266
Number of HSP's gapped (non-prelim): 389
length of query: 374
length of database: 191,569,459
effective HSP length: 119
effective length of query: 255
effective length of database: 127,355,155
effective search space: 32475564525
effective search space used: 32475564525
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)