Query 017291
Match_columns 374
No_of_seqs 88 out of 119
Neff 2.4
Searched_HMMs 46136
Date Fri Mar 29 07:16:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017291.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017291hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02508 magnesium-protoporphy 100.0 8E-169 2E-173 1204.5 19.3 281 60-340 1-281 (357)
2 PRK13654 magnesium-protoporphy 100.0 2E-167 4E-172 1196.1 19.4 278 58-340 8-285 (355)
3 CHL00185 ycf59 magnesium-proto 100.0 1E-166 2E-171 1188.6 18.5 274 62-340 8-281 (351)
4 TIGR02029 AcsF magnesium-proto 100.0 1E-166 2E-171 1184.1 18.0 275 61-340 1-275 (337)
5 cd01047 ACSF Aerobic Cyclase S 100.0 8E-164 2E-168 1159.7 19.0 265 71-340 1-265 (323)
6 PF02915 Rubrerythrin: Rubrery 99.7 1E-17 2.3E-22 130.7 -0.4 128 141-274 1-137 (137)
7 cd00657 Ferritin_like Ferritin 98.7 5.2E-09 1.1E-13 76.9 1.6 123 143-273 3-129 (130)
8 cd01044 Ferritin_CCC1_N Ferrit 96.7 0.00076 1.6E-08 55.6 1.9 117 145-275 5-124 (125)
9 cd07911 RNRR2_Rv0233_like Ribo 95.7 0.061 1.3E-06 50.1 8.6 201 126-336 34-263 (280)
10 cd01046 Rubrerythrin_like rubr 95.6 0.011 2.3E-07 49.4 3.1 119 139-276 2-121 (123)
11 cd00657 Ferritin_like Ferritin 95.4 0.013 2.9E-07 43.0 2.8 55 137-193 76-130 (130)
12 PF13668 Ferritin_2: Ferritin- 95.2 0.014 3E-07 48.1 2.6 54 139-194 83-136 (137)
13 cd01045 Ferritin_like_AB Uncha 95.2 0.011 2.4E-07 46.2 1.7 53 143-197 3-55 (139)
14 cd01041 Rubrerythrin Rubreryth 95.0 0.02 4.3E-07 47.5 3.0 127 140-275 3-131 (134)
15 cd07908 Mn_catalase_like Manga 94.0 0.047 1E-06 46.1 3.0 127 140-274 18-154 (154)
16 PF02915 Rubrerythrin: Rubrery 93.9 0.069 1.5E-06 41.9 3.6 56 135-192 81-136 (137)
17 cd01049 RNRR2 Ribonucleotide R 93.3 0.13 2.8E-06 47.2 4.8 58 135-194 141-202 (288)
18 PF11583 AurF: P-aminobenzoate 93.2 0.052 1.1E-06 50.4 2.1 217 101-327 34-277 (304)
19 cd00907 Bacterioferritin Bacte 92.3 0.13 2.7E-06 42.6 3.0 133 137-276 4-139 (153)
20 cd07911 RNRR2_Rv0233_like Ribo 91.4 0.093 2E-06 48.9 1.5 43 151-195 160-203 (280)
21 PRK08326 ribonucleotide-diphos 90.6 1.8 3.9E-05 41.7 9.3 199 126-337 51-284 (311)
22 PRK08326 ribonucleotide-diphos 90.2 0.15 3.2E-06 49.0 1.5 43 150-194 178-221 (311)
23 cd01050 Acyl_ACP_Desat Acyl AC 89.7 0.16 3.5E-06 49.5 1.4 49 144-192 153-201 (297)
24 COG1633 Uncharacterized conser 89.6 0.25 5.5E-06 44.6 2.4 57 139-197 25-81 (176)
25 cd01045 Ferritin_like_AB Uncha 89.3 0.3 6.5E-06 38.1 2.4 51 139-191 87-137 (139)
26 PRK10635 bacterioferritin; Pro 88.7 0.49 1.1E-05 41.8 3.6 135 137-276 5-140 (158)
27 PRK07209 ribonucleotide-diphos 88.4 0.36 7.7E-06 47.5 2.8 54 134-189 197-255 (369)
28 PF00268 Ribonuc_red_sm: Ribon 88.4 1.4 3E-05 41.0 6.5 199 125-337 42-265 (281)
29 cd01049 RNRR2 Ribonucleotide R 87.0 2.1 4.5E-05 39.5 6.7 195 125-336 34-265 (288)
30 cd07908 Mn_catalase_like Manga 86.1 0.62 1.3E-05 39.4 2.6 52 139-192 102-153 (154)
31 PF00210 Ferritin: Ferritin-li 85.7 0.39 8.4E-06 37.9 1.1 131 140-275 1-137 (142)
32 PF00268 Ribonuc_red_sm: Ribon 84.6 0.46 1E-05 44.1 1.3 43 151-195 165-207 (281)
33 cd01052 DPSL DPS-like protein, 84.2 0.6 1.3E-05 38.5 1.6 134 136-273 4-147 (148)
34 COG0208 NrdF Ribonucleotide re 83.5 1.1 2.3E-05 44.9 3.3 55 134-190 171-229 (348)
35 PRK09614 nrdF ribonucleotide-d 83.0 5.1 0.00011 38.3 7.6 196 125-336 45-270 (324)
36 PRK09614 nrdF ribonucleotide-d 81.5 0.8 1.7E-05 43.6 1.6 53 137-191 151-207 (324)
37 PRK12775 putative trifunctiona 79.7 0.94 2E-05 50.1 1.6 52 141-194 863-914 (1006)
38 PLN02492 ribonucleoside-diphos 79.7 1.2 2.5E-05 42.9 2.1 37 151-189 167-203 (324)
39 PF03405 FA_desaturase_2: Fatt 79.5 0.97 2.1E-05 45.1 1.5 46 149-194 163-209 (330)
40 PTZ00211 ribonucleoside-diphos 79.0 1.2 2.6E-05 43.1 1.9 37 151-189 178-214 (330)
41 cd01055 Nonheme_Ferritin nonhe 76.1 4.1 9E-05 34.1 4.1 133 139-275 4-137 (156)
42 PRK12759 bifunctional gluaredo 75.2 2.6 5.7E-05 42.0 3.2 53 136-190 234-290 (410)
43 PRK07209 ribonucleotide-diphos 75.2 6.7 0.00015 38.8 5.9 198 126-336 83-323 (369)
44 PLN02492 ribonucleoside-diphos 73.4 4 8.6E-05 39.4 3.8 83 126-210 45-139 (324)
45 PRK13967 nrdF1 ribonucleotide- 72.7 1.9 4.1E-05 41.8 1.4 44 151-196 166-210 (322)
46 cd01048 Ferritin_like_AB2 Unch 71.6 1.6 3.4E-05 37.2 0.6 46 150-200 12-57 (135)
47 PF13668 Ferritin_2: Ferritin- 71.2 4.1 8.9E-05 33.6 2.9 116 146-274 9-135 (137)
48 COG1592 Rubrerythrin [Energy p 70.2 1.8 3.9E-05 39.6 0.7 111 140-276 6-128 (166)
49 PRK13965 ribonucleotide-diphos 69.1 2.7 5.8E-05 41.1 1.6 51 135-188 164-214 (335)
50 PRK12759 bifunctional gluaredo 68.2 17 0.00037 36.4 7.0 199 126-337 132-359 (410)
51 cd01050 Acyl_ACP_Desat Acyl AC 67.9 3.8 8.2E-05 40.3 2.3 52 230-284 76-131 (297)
52 PTZ00211 ribonucleoside-diphos 62.9 5.9 0.00013 38.4 2.6 196 126-337 56-276 (330)
53 cd07910 MiaE MiaE tRNA-modifyi 59.8 28 0.00062 32.6 6.3 112 78-197 44-160 (180)
54 PTZ00183 centrin; Provisional 59.8 27 0.00059 28.1 5.5 87 101-190 15-108 (158)
55 PF11583 AurF: P-aminobenzoate 59.3 6.7 0.00015 36.6 2.2 50 146-196 178-227 (304)
56 TIGR02156 PA_CoA_Oxy1 phenylac 58.2 6.1 0.00013 38.8 1.8 151 128-292 14-185 (289)
57 PRK13456 DNA protection protei 57.6 13 0.00029 34.8 3.8 143 133-279 15-167 (186)
58 PRK09101 nrdB ribonucleotide-d 57.5 10 0.00022 37.7 3.3 53 135-189 190-246 (376)
59 PF08969 USP8_dimer: USP8 dime 52.6 5.9 0.00013 32.7 0.6 23 229-251 59-81 (115)
60 TIGR00754 bfr bacterioferritin 52.3 17 0.00036 31.1 3.3 136 136-276 4-140 (157)
61 PF03405 FA_desaturase_2: Fatt 51.2 5.9 0.00013 39.7 0.5 44 231-274 79-122 (330)
62 PF05138 PaaA_PaaC: Phenylacet 50.1 13 0.00028 35.5 2.6 154 127-292 6-181 (263)
63 cd09012 Glo_EDI_BRP_like_24 Th 49.4 6 0.00013 30.9 0.2 24 297-320 2-26 (124)
64 PF06175 MiaE: tRNA-(MS[2]IO[6 49.3 26 0.00057 34.2 4.5 119 72-198 89-212 (240)
65 PF09537 DUF2383: Domain of un 47.4 18 0.00038 29.1 2.6 58 141-200 4-61 (111)
66 cd01051 Mn_catalase Manganese 44.8 16 0.00034 32.4 2.1 55 140-196 101-155 (156)
67 cd01051 Mn_catalase Manganese 44.6 20 0.00044 31.8 2.7 115 145-275 30-153 (156)
68 COG1633 Uncharacterized conser 41.7 46 0.001 30.3 4.6 55 137-193 112-166 (176)
69 KOG0036 Predicted mitochondria 40.2 41 0.00088 35.6 4.5 142 100-260 14-163 (463)
70 PRK13778 paaA phenylacetate-Co 40.1 25 0.00053 35.2 2.8 155 127-292 31-203 (314)
71 PF13438 DUF4113: Domain of un 37.0 19 0.00042 26.8 1.2 20 66-86 31-50 (52)
72 PF14337 DUF4393: Domain of un 36.9 32 0.0007 30.1 2.8 47 132-190 32-78 (186)
73 PRK13966 nrdF2 ribonucleotide- 36.5 20 0.00043 35.0 1.5 36 151-188 168-203 (324)
74 COG1592 Rubrerythrin [Energy p 35.6 24 0.00052 32.5 1.8 29 168-196 101-129 (166)
75 cd01048 Ferritin_like_AB2 Unch 34.7 29 0.00063 29.6 2.1 45 139-185 83-127 (135)
76 PRK12775 putative trifunctiona 34.5 47 0.001 37.3 4.1 55 140-196 943-998 (1006)
77 PLN00179 acyl- [acyl-carrier p 33.2 28 0.00061 36.1 2.1 41 231-271 136-176 (390)
78 PF10934 DUF2634: Protein of u 32.9 40 0.00086 28.5 2.6 63 61-124 24-92 (112)
79 cd07235 MRD Mitomycin C resist 31.3 21 0.00045 27.5 0.6 23 298-320 3-26 (122)
80 smart00441 FF Contains two con 29.9 59 0.0013 23.1 2.7 45 98-144 3-54 (55)
81 cd01042 DMQH Demethoxyubiquino 29.4 33 0.00072 31.2 1.7 110 148-271 10-135 (165)
82 PF14098 SSPI: Small, acid-sol 29.0 60 0.0013 26.2 2.9 50 97-146 14-64 (65)
83 cd01046 Rubrerythrin_like rubr 29.0 61 0.0013 27.1 3.1 65 128-196 57-122 (123)
84 PLN00179 acyl- [acyl-carrier p 27.9 39 0.00085 35.0 2.1 61 132-192 186-264 (390)
85 PF08281 Sigma70_r4_2: Sigma-7 27.5 96 0.0021 21.8 3.4 35 123-165 3-37 (54)
86 PF07651 ANTH: ANTH domain; I 27.2 31 0.00068 31.6 1.2 104 129-234 13-125 (280)
87 PTZ00184 calmodulin; Provision 26.6 1.5E+02 0.0032 23.3 4.8 69 112-180 21-95 (149)
88 cd01041 Rubrerythrin Rubreryth 26.3 62 0.0014 26.9 2.7 56 141-196 76-133 (134)
89 cd06432 GT8_HUGT1_C_like The C 24.6 33 0.00072 32.0 0.8 19 249-267 213-231 (248)
90 smart00400 ZnF_CHCC zinc finge 24.0 36 0.00078 24.9 0.8 34 240-277 8-43 (55)
91 cd08536 SAM_PNT-Mae Sterile al 23.6 60 0.0013 25.6 2.0 55 98-164 10-65 (66)
92 cd08350 BLMT_like BLMT, a bleo 23.1 35 0.00076 26.5 0.6 27 296-322 3-30 (120)
93 PF05974 DUF892: Domain of unk 21.5 1E+02 0.0022 27.1 3.2 65 135-201 2-66 (159)
94 PF03980 Nnf1: Nnf1 ; InterPr 21.1 71 0.0015 26.1 2.0 30 135-164 7-36 (109)
95 PRK10236 hypothetical protein; 20.6 1.1E+02 0.0023 30.1 3.3 48 100-147 91-145 (237)
96 TIGR03092 SASP_sspI small, aci 20.5 1.1E+02 0.0023 25.0 2.8 49 98-146 14-63 (65)
97 PLN02964 phosphatidylserine de 20.4 1.7E+02 0.0037 32.0 5.2 64 96-166 172-243 (644)
98 cd00907 Bacterioferritin Bacte 20.2 77 0.0017 26.3 2.0 59 140-198 83-142 (153)
No 1
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=100.00 E-value=7.8e-169 Score=1204.55 Aligned_cols=281 Identities=86% Similarity=1.376 Sum_probs=278.8
Q ss_pred CccchhhhhhhccCCCCccccChHHHhhcccccccccccHHHHHHHHHHHhhccCCCCcccChhHHHHhhcCChHHHHHH
Q 017291 60 SKKSNKTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIF 139 (374)
Q Consensus 60 ~~~~~k~a~~etlLTPRFYTTDFd~m~~lf~~~id~~~~r~E~~Aml~Efr~DyNr~HFvR~~eF~~~~d~l~~e~R~~F 139 (374)
+++++|.|++||||||||||||||+|++|||++||++++|+||+||++|||+||||+|||||+||+++|++|||++|++|
T Consensus 1 ~~~~~k~~~~etlLTPRFYTTDF~~m~~l~~~~id~s~~~~e~~A~l~Efr~DyNr~HF~R~~eF~~~~~~l~~~~r~~F 80 (357)
T PLN02508 1 MRKGIKEAIKETLLTPRFYTTDFDEMEQLFNTEINKNLDMAEFEALLQEFKTDYNQTHFVRNEEFKAAADKIQGPLRQIF 80 (357)
T ss_pred CCccccchhhhcccCCccccccHHHHHhhccccCCCchhHHHHHHHHHHHHhCccccccccChhhccchhhCCHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhccccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhcccccccccccccccCcccccCceee
Q 017291 140 VEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFI 219 (374)
Q Consensus 140 idFLerScTaEFSGflLYKEl~rrlk~~NP~lae~F~lMaRDEARHAGFLNkal~Df~l~lDLgfLtk~kkYTfF~PkfI 219 (374)
|||||||||||||||||||||+||+|++||+|+|+|++||||||||||||||||+||||+||||||||+|+||||+||||
T Consensus 81 idFLerSctaEFSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~Df~l~lDLgfLtk~rkYTfF~PkfI 160 (357)
T PLN02508 81 IEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFTLMSRDEARHAGFLNKALSDFNLALDLGFLTKNRKYTFFKPKFI 160 (357)
T ss_pred HHHHHhhhhhhcccchHHHHHHHhcccCChHHHHHHHHhCchhHHHHhHHHHHHHHcCccccchhhcccCceeeeCccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeehhcccccchhhhHHHHhHhhhCCCCcccchhhhhhhhhcccccchhHHHHHHhhCccchhhhhhHHHHHHHHHHhhh
Q 017291 220 FYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVYV 299 (374)
Q Consensus 220 fYAtYLSEKIGYwRYItIyRHLe~~Pe~rf~PIFk~FE~WCqDEnRHGDfFaalmraqP~ll~g~~~kLW~RFFLLsVfa 299 (374)
|||||||||||||||||||||||+|||+||||||+|||+||||||||||||+|||||||+||+||+||||||||||||||
T Consensus 161 fYAtYLSEKIGYwRYItIyRHLe~~Pe~r~~PIFk~Fe~WCqDEnRHGd~Fa~lmraqP~ll~g~~~kLW~RFFLLsVfa 240 (357)
T PLN02508 161 FYATYLSEKIGYWRYITIYRHLQANPDYQLYPIFKYFENWCQDENRHGDFFSALLKAQPQFLNDWKAKLWSRFFCLSVYV 240 (357)
T ss_pred ehhhHhhhhhhhhhHhHHHHHHHhCcccccchHHHHHHHHhcccchhHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred heeeccccchhhHHhcCCChhhhhHHHHHHhhHHHHHHHHH
Q 017291 300 TMYLNDCQRTAFYEGIGLDTKEFDMHVIIEVSLWLSLLVCF 340 (374)
Q Consensus 300 TMyl~D~~R~~FY~alGLD~~eyD~~Vi~~TN~ta~r~f~~ 340 (374)
|||||||||++||++|||||++||++||++||++|+|+||.
T Consensus 241 TMyl~d~~R~~Fy~alGld~~~yD~~Vi~~Tne~s~rvFP~ 281 (357)
T PLN02508 241 TMYLNDHQRTAFYEGIGLNTKQFNMHVIIETNRTTARIFPA 281 (357)
T ss_pred HheeeccchHHHHHHhCCCHHHhhHHHHHHhhHHHHhhCCe
Confidence 99999999999999999999999999999999999999995
No 2
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=100.00 E-value=1.8e-167 Score=1196.06 Aligned_cols=278 Identities=61% Similarity=1.096 Sum_probs=275.1
Q ss_pred CCCccchhhhhhhccCCCCccccChHHHhhcccccccccccHHHHHHHHHHHhhccCCCCcccChhHHHHhhcCChHHHH
Q 017291 58 KPSKKSNKTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQ 137 (374)
Q Consensus 58 ~~~~~~~k~a~~etlLTPRFYTTDFd~m~~lf~~~id~~~~r~E~~Aml~Efr~DyNr~HFvR~~eF~~~~d~l~~e~R~ 137 (374)
.+.++++|.|++||||||||||||||+|+++ |++++|+||+||++|||+||||+|||||+||+++||+||||+|+
T Consensus 8 ~~~~~~~k~~~~etlLTPRFYTTDF~~m~~~-----d~s~~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~d~l~~e~r~ 82 (355)
T PRK13654 8 SELRPGTKAALKETILTPRFYTTDFDAMAKL-----DLSPNREELDAILEEMRADYNRHHFVRDEEFDQDWDHLDPETRK 82 (355)
T ss_pred ccccccccchhhhcccCCccccccHHHHHhc-----CCchhHHHHHHHHHHHHhCcccccccCChhhhhchhhCCHHHHH
Confidence 4558999999999999999999999999997 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhccccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhcccccccccccccccCcccccCce
Q 017291 138 IFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPK 217 (374)
Q Consensus 138 ~FidFLerScTaEFSGflLYKEl~rrlk~~NP~lae~F~lMaRDEARHAGFLNkal~Df~l~lDLgfLtk~kkYTfF~Pk 217 (374)
+||||||||||||||||||||||+||+|++||+|+|+|++||||||||||||||||+||||+||||||||+|+||||+||
T Consensus 83 ~FidFLerSctaEFSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df~l~lDLgfLtk~k~YTfF~Pk 162 (355)
T PRK13654 83 EFIDFLERSCTAEFSGFLLYKELSRRLKDRNPLLAELFQLMARDEARHAGFLNKAMKDFGLSLDLGFLTKKKKYTFFPPK 162 (355)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHhccccCcHHHHHHHHHhhhHHHHhhhHHHHHHHcCccccchhhccCCceeeeCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeehhcccccchhhhHHHHhHhhhCCCCcccchhhhhhhhhcccccchhHHHHHHhhCccchhhhhhHHHHHHHHHHh
Q 017291 218 FIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSV 297 (374)
Q Consensus 218 fIfYAtYLSEKIGYwRYItIyRHLe~~Pe~rf~PIFk~FE~WCqDEnRHGDfFaalmraqP~ll~g~~~kLW~RFFLLsV 297 (374)
|||||||||||||||||||||||||+|||+||||||+|||+||||||||||||+|||||||+||+||+||||||||||||
T Consensus 163 fIfYatYLSEKIGYwRYItIyRHLe~~Pe~r~~PIF~~Fe~WCqDEnRHGd~F~~lmraqP~ll~g~~~kLW~RFFLlsV 242 (355)
T PRK13654 163 FIFYATYLSEKIGYWRYITIYRHLEKHPEHRFHPIFKFFENWCQDENRHGDFFALLMRAQPKLLKGWVNRLWIRFFLLAV 242 (355)
T ss_pred eeeehhHhHhhhhHHHHHHHHHHHHhCcccccCchHHHHHHHhcccchhHHHHHHHHhcCchhhcchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhheeeccccchhhHHhcCCChhhhhHHHHHHhhHHHHHHHHH
Q 017291 298 YVTMYLNDCQRTAFYEGIGLDTKEFDMHVIIEVSLWLSLLVCF 340 (374)
Q Consensus 298 faTMyl~D~~R~~FY~alGLD~~eyD~~Vi~~TN~ta~r~f~~ 340 (374)
|+|||||||||++||++|||||++||++||++||+||+|+||.
T Consensus 243 faTmyl~d~~R~~Fy~alGlD~~~yD~~Vi~~Tne~s~rvFP~ 285 (355)
T PRK13654 243 FATMYLRDHERPDFYEALGLDAREYDQEVIRKTNETSARVFPV 285 (355)
T ss_pred HhheeeecccchHHHHHhCCCHHHhhHHHHHHhhHHHHhhCCe
Confidence 9999999999999999999999999999999999999999995
No 3
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=100.00 E-value=1.1e-166 Score=1188.64 Aligned_cols=274 Identities=68% Similarity=1.168 Sum_probs=271.6
Q ss_pred cchhhhhhhccCCCCccccChHHHhhcccccccccccHHHHHHHHHHHhhccCCCCcccChhHHHHhhcCChHHHHHHHH
Q 017291 62 KSNKTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVE 141 (374)
Q Consensus 62 ~~~k~a~~etlLTPRFYTTDFd~m~~lf~~~id~~~~r~E~~Aml~Efr~DyNr~HFvR~~eF~~~~d~l~~e~R~~Fid 141 (374)
-++|.|++||||||||||||||+|+++ |++++|+||+||++|||+||||+|||||+||+++||+||||+|++|||
T Consensus 8 ~~~k~~~~etlLTPRFYTTDF~~m~~~-----dis~~~~e~~A~l~E~r~DyNr~HF~R~~eF~~~~d~l~~e~r~~Fid 82 (351)
T CHL00185 8 LQTKTPAKETLLTPRFYTTDFDEMANY-----DISSNIEEIEAILEEFRADYNQQHFIRDNEFNQSWSNLDEKTKSLFVE 82 (351)
T ss_pred hcccchhhhcccCCccccccHHHHHhc-----CCchhHHHHHHHHHHHHhCccccccccChhhhhchhhCCHHHHHHHHH
Confidence 468899999999999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhccccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhcccccccccccccccCcccccCceeeee
Q 017291 142 FLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFY 221 (374)
Q Consensus 142 FLerScTaEFSGflLYKEl~rrlk~~NP~lae~F~lMaRDEARHAGFLNkal~Df~l~lDLgfLtk~kkYTfF~PkfIfY 221 (374)
|||||||||||||||||||+||+|++||+|+|+|++||||||||||||||||+||||+||||||||+|+||||+||||||
T Consensus 83 FLerScTaEFSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df~l~lDLgfLtk~rkYTfF~PkfI~Y 162 (351)
T CHL00185 83 FLERSCTAEFSGFLLYKELSRKLKDKNPLLAEGFLLMSRDEARHAGFLNKAMSDFNLSLDLGFLTKSRKYTFFSPKFIFY 162 (351)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHhccCCcHHHHHHHHHhhhhHHHhhhHHHHHHHcCccccchhhccCCceeeecccceeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ehhcccccchhhhHHHHhHhhhCCCCcccchhhhhhhhhcccccchhHHHHHHhhCccchhhhhhHHHHHHHHHHhhhhe
Q 017291 222 ATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVYVTM 301 (374)
Q Consensus 222 AtYLSEKIGYwRYItIyRHLe~~Pe~rf~PIFk~FE~WCqDEnRHGDfFaalmraqP~ll~g~~~kLW~RFFLLsVfaTM 301 (374)
|||||||||||||||||||||+|||+||||||+|||+||||||||||||+|||||||+||+||+|||||||||||||+||
T Consensus 163 AtYLSEKIGYwRYItIyRHLe~~Pe~r~~PIF~~FE~WCqDEnRHGdfF~almraqP~ll~g~~~kLW~RFFLlsVfaTm 242 (351)
T CHL00185 163 ATYLSEKIGYWRYITIYRHLEKNPEYRIYPIFKFFESWCQDENRHGDFFAALLKSQPHLLNGWKARLWCRFFLLSVFATM 242 (351)
T ss_pred hhHHHhhhhhhHHhHHHHHHHhCcccccchHHHHHHHHhcccchhHHHHHHHHhcChhhhhhHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccchhhHHhcCCChhhhhHHHHHHhhHHHHHHHHH
Q 017291 302 YLNDCQRTAFYEGIGLDTKEFDMHVIIEVSLWLSLLVCF 340 (374)
Q Consensus 302 yl~D~~R~~FY~alGLD~~eyD~~Vi~~TN~ta~r~f~~ 340 (374)
|||||||++||++|||||++||++||++||+||+|+||.
T Consensus 243 yl~d~~R~~Fy~alGld~~~yD~~Vi~~Tn~~a~rvFP~ 281 (351)
T CHL00185 243 YLNDLQRSDFYAAIGLDARQFDMHVIRKTNESAARLFPV 281 (351)
T ss_pred eehhcchHHHHHHhCCCHHHhhHHHHHHhhHHHHhhCCe
Confidence 999999999999999999999999999999999999995
No 4
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=100.00 E-value=1.1e-166 Score=1184.12 Aligned_cols=275 Identities=68% Similarity=1.171 Sum_probs=272.6
Q ss_pred ccchhhhhhhccCCCCccccChHHHhhcccccccccccHHHHHHHHHHHhhccCCCCcccChhHHHHhhcCChHHHHHHH
Q 017291 61 KKSNKTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFV 140 (374)
Q Consensus 61 ~~~~k~a~~etlLTPRFYTTDFd~m~~lf~~~id~~~~r~E~~Aml~Efr~DyNr~HFvR~~eF~~~~d~l~~e~R~~Fi 140 (374)
++++|.|++||||||||||||||+|++| |++++|+||+||++|||+||||+|||||+||+++|++|||++|++||
T Consensus 1 ~~~~k~~~~etlLtPRFYTTDF~~m~~~-----d~s~~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~~~l~~e~r~~Fi 75 (337)
T TIGR02029 1 KKGTKTASQETLLTPRFYTTDFEEMANL-----DVSPVENEWDAMLAEMKADYNRHHFVRNEEFDQSWEHIDGELRQAFI 75 (337)
T ss_pred CCccccchhhcccCCccccccHHHHHhc-----CCchhHHHHHHHHHHHHhCccccccccChhhhcchhhCCHHHHHHHH
Confidence 4689999999999999999999999997 99999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhccccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhcccccccccccccccCcccccCceeee
Q 017291 141 EFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIF 220 (374)
Q Consensus 141 dFLerScTaEFSGflLYKEl~rrlk~~NP~lae~F~lMaRDEARHAGFLNkal~Df~l~lDLgfLtk~kkYTfF~PkfIf 220 (374)
||||||||||||||||||||+||+|++||+|+|+|++||||||||||||||||+||||+||||||||+|+||||+|||||
T Consensus 76 dFLerScTaEFSGflLYKEl~rrlk~~~P~lae~F~~MaRDEARHAGFlNkam~df~l~lDLgfLtk~r~YTfF~PkfI~ 155 (337)
T TIGR02029 76 EFLERSCTSEFSGFLLYKELSRRLKNRDPVVAELFQLMARDEARHAGFLNKALGDFGLALDLGFLTKTRKYTFFRPKFIY 155 (337)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHhcCCCChHHHHHHHHHhhhhHHHhhhHHHHHHHcCcccchhhhccCCceeeeccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eehhcccccchhhhHHHHhHhhhCCCCcccchhhhhhhhhcccccchhHHHHHHhhCccchhhhhhHHHHHHHHHHhhhh
Q 017291 221 YATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVYVT 300 (374)
Q Consensus 221 YAtYLSEKIGYwRYItIyRHLe~~Pe~rf~PIFk~FE~WCqDEnRHGDfFaalmraqP~ll~g~~~kLW~RFFLLsVfaT 300 (374)
||||||||||||||||||||||+|||+||||||+|||+||||||||||||+|||||||+||+||+|||||||||||||+|
T Consensus 156 YAtYLSEKIGYwRYItIyRHLe~~Pe~r~~PIF~~Fe~WCqDEnRHGd~F~~lmrsqP~ll~g~~~kLW~RFFLLsVfaT 235 (337)
T TIGR02029 156 YATYLSEKIGYWRYITIYRHLEENPENQFYPIFKYFESWCQDENRHGDAFAALMRSQPQLLNNWKAKLWSRFFLLSVYST 235 (337)
T ss_pred hhhHhHhhhhhHHHHHHHHHHHhCcccccchHHHHHHHHhcccchhHHHHHHHHhcChhhhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccchhhHHhcCCChhhhhHHHHHHhhHHHHHHHHH
Q 017291 301 MYLNDCQRTAFYEGIGLDTKEFDMHVIIEVSLWLSLLVCF 340 (374)
Q Consensus 301 Myl~D~~R~~FY~alGLD~~eyD~~Vi~~TN~ta~r~f~~ 340 (374)
||||||+|++||++|||||++||++||++||+||+|+||.
T Consensus 236 myl~d~~R~~Fy~alGld~~~yD~~Vi~~Tne~s~rvFP~ 275 (337)
T TIGR02029 236 MYLRDHQRPGFYEALGLDATDFDLQVFRNTNETSGRIFPM 275 (337)
T ss_pred HhhhhcccHHHHHHhCCCHHHhhHHHHHHhhHHHHhhCCe
Confidence 9999999999999999999999999999999999999995
No 5
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=100.00 E-value=7.9e-164 Score=1159.67 Aligned_cols=265 Identities=77% Similarity=1.238 Sum_probs=263.5
Q ss_pred ccCCCCccccChHHHhhcccccccccccHHHHHHHHHHHhhccCCCCcccChhHHHHhhcCChHHHHHHHHHHHhhhhcc
Q 017291 71 TLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAE 150 (374)
Q Consensus 71 tlLTPRFYTTDFd~m~~lf~~~id~~~~r~E~~Aml~Efr~DyNr~HFvR~~eF~~~~d~l~~e~R~~FidFLerScTaE 150 (374)
|||||||||||||+|+++ ||+++|+||+||++|||+||||+|||||++|+++|++|||++|++||||||||||||
T Consensus 1 tlLtPRFYTTDF~~m~~~-----dis~~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~~~~~~e~r~~FidFLerSctaE 75 (323)
T cd01047 1 TLLTPRFYTTDFDEMAAL-----DISKNREEFEAMLAEFKADYNRHHFVRNDEFDQAADKIDPELRQIFLEFLERSCTSE 75 (323)
T ss_pred CCCCCccccccHHHHHhc-----CCchhHHHHHHHHHHHHhCcccccccCCchhhhhhhhCCHHHHHHHHHHHHHHhhhh
Confidence 799999999999999997 999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhcccccccccccccccCcccccCceeeeeehhcccccc
Q 017291 151 FSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIG 230 (374)
Q Consensus 151 FSGflLYKEl~rrlk~~NP~lae~F~lMaRDEARHAGFLNkal~Df~l~lDLgfLtk~kkYTfF~PkfIfYAtYLSEKIG 230 (374)
||||||||||+||+|++||+|+|+|++||||||||||||||||+||||+||||||||+|+||||+|||||||||||||||
T Consensus 76 FSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df~l~lDLgfLtk~r~YTfF~PkfI~YatYLSEKIG 155 (323)
T cd01047 76 FSGFLLYKELGRRLKNTNPVVAELFRLMARDEARHAGFLNKALSDFNLALDLGFLTKTRKYTFFKPKFIFYATYLSEKIG 155 (323)
T ss_pred hhhHHHHHHHHHHcccCCcHHHHHHHHHhhhHHHHhhhHHHHHHHcCcccchhhhccCCceeeeCccceeehhHhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHhHhhhCCCCcccchhhhhhhhhcccccchhHHHHHHhhCccchhhhhhHHHHHHHHHHhhhheeeccccchh
Q 017291 231 YWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVYVTMYLNDCQRTA 310 (374)
Q Consensus 231 YwRYItIyRHLe~~Pe~rf~PIFk~FE~WCqDEnRHGDfFaalmraqP~ll~g~~~kLW~RFFLLsVfaTMyl~D~~R~~ 310 (374)
||||||||||||+|||+||||||+|||+||||||||||||+|||||||+||+||+|||||||||||||+|||||||||++
T Consensus 156 YwRYItIyRHLe~~Pe~r~~PIF~~Fe~WCqDEnRHGd~F~~lmrsqP~ll~~~~~kLW~RFFLlsVfaTmyl~d~~R~~ 235 (323)
T cd01047 156 YWRYITIYRHLERNPENQFHPIFKYFENWCQDENRHGDFFAALLRAQPHLLNDGKNKLWIRFFLLSVYATMYLNDHQRPD 235 (323)
T ss_pred hHHHHHHHHHHHhCcccccchHHHHHHHHhcccchhhHHHHHHHhcChhhhhhHHHHHHHHHHHHHHHHhheeeccchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhcCCChhhhhHHHHHHhhHHHHHHHHH
Q 017291 311 FYEGIGLDTKEFDMHVIIEVSLWLSLLVCF 340 (374)
Q Consensus 311 FY~alGLD~~eyD~~Vi~~TN~ta~r~f~~ 340 (374)
||++|||||++||++||++||+||+|+||.
T Consensus 236 Fy~alGld~~~yD~~Vi~~Tn~~s~rvFP~ 265 (323)
T cd01047 236 FYEALGLDTTEFDMHVIRETNETAARVFPA 265 (323)
T ss_pred HHHHhCCCHHHhhHHHHHHhhHHHHhhCCe
Confidence 999999999999999999999999999995
No 6
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=99.65 E-value=1e-17 Score=130.67 Aligned_cols=128 Identities=29% Similarity=0.452 Sum_probs=117.8
Q ss_pred HHHHhhhhccccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhcccccccccccccccCcccccC-----
Q 017291 141 EFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFK----- 215 (374)
Q Consensus 141 dFLerScTaEFSGflLYKEl~rrlk~~NP~lae~F~lMaRDEARHAGFLNkal~Df~l~lDLgfLtk~kkYTfF~----- 215 (374)
|.|..+|..|.+|..+|++++++.++.+|.++++|..||+||.+|++++.+.+.+.+.+.+.+++.....+++++
T Consensus 1 e~L~~A~~~E~~~~~~Y~~~a~~~~~~~p~~~~~f~~lA~~E~~H~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (137)
T PF02915_consen 1 EILEMAIKMELEAAKFYRELAEKAKDEGPELKELFRRLAEEEQEHAKFLEKLLRKLGPGEEPPFLEEKVEYSFFPKLEEE 80 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCHCSTTHHTHCHCCCCCHCCCCTCCSS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchhhhhhhhhhcchhhhh
Confidence 578999999999999999999999877799999999999999999999999999999999999999999999998
Q ss_pred ----ceeeeeehhcccccchhhhHHHHhHhhhCCCCcccchhhhhhhhhcccccchhHHHHHH
Q 017291 216 ----PKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALM 274 (374)
Q Consensus 216 ----PkfIfYAtYLSEKIGYwRYItIyRHLe~~Pe~rf~PIFk~FE~WCqDEnRHGDfFaalm 274 (374)
+..++...+..|+.+|..|..+.+.+.. | ++-+.|+.+++||.+|++.|..|+
T Consensus 81 ~~~~~~~~l~~a~~~E~~~~~~Y~~~a~~~~~-~-----~~~~~~~~l~~~E~~H~~~l~~ly 137 (137)
T PF02915_consen 81 TDENLEEALEMAIKEEKDAYEFYAELARKAPD-P-----EIRKLFEELAKEEKEHEDLLEKLY 137 (137)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTS-H-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-H-----HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 8899999999999999999999998753 2 355779999999999999998764
No 7
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=98.70 E-value=5.2e-09 Score=76.90 Aligned_cols=123 Identities=22% Similarity=0.296 Sum_probs=100.0
Q ss_pred HHhhhhccccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhcccccccccccc----cccCcccccCcee
Q 017291 143 LERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFL----TKARKYTFFKPKF 218 (374)
Q Consensus 143 LerScTaEFSGflLYKEl~rrlk~~NP~lae~F~lMaRDEARHAGFLNkal~Df~l~lDLgfL----tk~kkYTfF~Pkf 218 (374)
|...+..|..+...|..+..+++ ||.++++|.-++.||.+|+..+++.+...|........ ...-......|.-
T Consensus 3 L~~~~~~E~~a~~~y~~~~~~~~--~~~~~~~~~~~a~~E~~H~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (130)
T cd00657 3 LNDALAGEYAAIIAYGQLAARAP--DPDLKDELLEIADEERRHADALAERLRELGGTPPLPPAHLLAAYALPKTSDDPAE 80 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHhcccCCCccCHHH
Confidence 55667899999999999999994 99999999999999999999999999998876665431 1222244567777
Q ss_pred eeeehhcccccchhhhHHHHhHhhhCCCCcccchhhhhhhhhcccccchhHHHHH
Q 017291 219 IFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSAL 273 (374)
Q Consensus 219 IfYAtYLSEKIGYwRYItIyRHLe~~Pe~rf~PIFk~FE~WCqDEnRHGDfFaal 273 (374)
++...+..|+.|...|-.+.+.++ .| .+-+.|....+||.+|.+.+..+
T Consensus 81 ~l~~~~~~E~~~~~~y~~~~~~~~-d~-----~~~~~~~~~~~~E~~H~~~~~~~ 129 (130)
T cd00657 81 ALRAALEVEARAIAAYRELIEQAD-DP-----ELRRLLERILADEQRHAAWFRKL 129 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-Ch-----HHHHHHHHHHHHHHHHHHHHHhh
Confidence 888889999999888888887765 33 36778999999999999988754
No 8
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=96.74 E-value=0.00076 Score=55.63 Aligned_cols=117 Identities=21% Similarity=0.287 Sum_probs=79.9
Q ss_pred hhhhccccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhcccccccccccccccCcccccCceeeeeehh
Q 017291 145 RSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATY 224 (374)
Q Consensus 145 rScTaEFSGflLYKEl~rrlk~~NP~lae~F~lMaRDEARHAGFLNkal~Df~l~lDLgfLtk~kkYTfF~PkfIfYAtY 224 (374)
..+.-|-.|..+|..+++.. ++|.++++|..||.+|.+|+-++-+-+++.|...- ..+ ++. ++...
T Consensus 5 ~~~~~E~~~~~~Y~~la~~~--~~~~~k~~f~~lA~~E~~H~~~~~~~~~~~~~~~~-----~~~----~~~---~~~~~ 70 (125)
T cd01044 5 KFQKDEITEAAIYRKLAKRE--KDPENREILLKLAEDERRHAEFWKKFLGKRGVPPP-----RPK----LKI---FFYKL 70 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-----Ccc----HHH---HHHHH
Confidence 45567999999999999998 79999999999999999999999999988776553 111 111 12234
Q ss_pred cccccchhhhHHHHhHhhhCCCCcccchh---hhhhhhhcccccchhHHHHHHh
Q 017291 225 LSEKIGYWRYITIYRHLKANPEFQCYPIF---KYFENWCQDENRHGDFFSALMK 275 (374)
Q Consensus 225 LSEKIGYwRYItIyRHLe~~Pe~rf~PIF---k~FE~WCqDEnRHGDfFaalmr 275 (374)
|+.-.|+.--+-+--..|++--..+.-+. .-++.=-+||-.|...+..+++
T Consensus 71 l~~~~g~~~~l~~~~~~E~~ai~~Y~~~~~~~~~~~~Ii~dE~~H~~~L~~~~~ 124 (125)
T cd01044 71 LARIFGPTFVLKLLERGEERAIEKYDRLLEERPELKEIIADELEHEEVLIALLD 124 (125)
T ss_pred HHHHHhHHHHHHHHHHhHHhhHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 55545554332222233444333333333 2567778999999998887764
No 9
>cd07911 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like protein, Mn/Fe-binding domain. Rv0233 is a Mycobacterium tuberculosis ribonucleotide reductase R2 protein with a heterodinuclear manganese/iron-carboxylate cofactor located in its metal center. The Rv0233-like family may represent a structural/functional counterpart of the evolutionary ancestor of the RNRR2's (Ribonucleotide Reductase, R2/beta subunit) and the bacterial multicomponent monooxygenases. RNRR2s belong to a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in prokaryotes and archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites.
Probab=95.66 E-value=0.061 Score=50.13 Aligned_cols=201 Identities=14% Similarity=0.102 Sum_probs=108.1
Q ss_pred HHhhcCChHHHHHHHHHHHhhhhccc-cchhhHHHHhhhhc-ccCccHHHHhhccccchhhhhhhhhhhhcccccccccc
Q 017291 126 EAADKMQGPLRQIFVEFLERSCTAEF-SGFLLYKELGRRLK-KTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLG 203 (374)
Q Consensus 126 ~~~d~l~~e~R~~FidFLerScTaEF-SGflLYKEl~rrlk-~~NP~lae~F~lMaRDEARHAGFLNkal~Df~l~lDLg 203 (374)
.+|+.|+++.|..+..-|--=..+|- -|.-|. .+.+.+. ..+|+..-.+..++=+||+|+-+-..-+.-+|..-|..
T Consensus 34 ~~w~~L~~~Er~~~~~~l~~f~~~D~~v~~~l~-~~~~~~~~~~~~e~~~~l~~q~~~EaiH~esYs~~l~tl~~~~~~~ 112 (280)
T cd07911 34 EDWEQLSEEERDLALRLCAGFIAGEEAVTLDLL-PLMMAMAAEGRLEEEMYLTQFLFEEAKHTDFFRRWLDAVGVSDDLS 112 (280)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchh
Confidence 47888999888876543322222231 111122 2222111 23688889999999999999998888887777653211
Q ss_pred cccc----c-----------Ccc------cccCceeeeeehhcccccc-hhhhHHHHhHhhhCCCCcccc-hhhhhhhhh
Q 017291 204 FLTK----A-----------RKY------TFFKPKFIFYATYLSEKIG-YWRYITIYRHLKANPEFQCYP-IFKYFENWC 260 (374)
Q Consensus 204 fLtk----~-----------kkY------TfF~PkfIfYAtYLSEKIG-YwRYItIyRHLe~~Pe~rf~P-IFk~FE~WC 260 (374)
.... . +.| ++.+= .+.| .++-|.|= |-=|-.|+--|++.. .-| +=+=++-=.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~-~~~lEGilf~sgF~~~~~~l~~~g---~m~g~~~~i~~I~ 187 (280)
T cd07911 113 DLHTAVYREPFYEALPYAELRLYLDASPAAQVRA-SVTY-NMIVEGVLAETGYYAWRTICEKRG---ILPGMQEGIRRLG 187 (280)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhcCCCChHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHhhcC---CCcCHHHHHHHHH
Confidence 0000 0 000 00000 1111 23455533 333334343343322 112 112223335
Q ss_pred cccccchhHHHHHHh----hCccchhhhhhHHHHHHHHHHhhhheeeccccchhhHHhcCCChhhhhHHHHHHhhHHHHH
Q 017291 261 QDENRHGDFFSALMK----AQPQFLNDWKAKLWARFFCLSVYVTMYLNDCQRTAFYEGIGLDTKEFDMHVIIEVSLWLSL 336 (374)
Q Consensus 261 qDEnRHGDfFaalmr----aqP~ll~g~~~kLW~RFFLLsVfaTMyl~D~~R~~FY~alGLD~~eyD~~Vi~~TN~ta~r 336 (374)
.||.+|+.|+..+++ .+|++.+ +.-.+--..+-++|=.+-++.+.... ..+|+++.++...+-.+.|.-...
T Consensus 188 RDE~~H~~fg~~l~~~l~~e~p~~~~-~~~e~~~~l~~~av~~~~~~~~~~~~---~~~g~~~~~~~~Y~~~~a~~rL~~ 263 (280)
T cd07911 188 DDESRHIAWGTFTCRRLVAADDANWD-VFEERMNELVPHALGLIDEIFELYDE---MPFGLDPDELMQYAVDQFQRRLGY 263 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHChhHHH-HHHHHHHHHHHHHHHHHHHHHHhCCC---cCCCCCHHHHHHHHHHHHHHHHHH
Confidence 799999999987776 5665544 22333334455555555555544332 379999999999998888876544
No 10
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=95.60 E-value=0.011 Score=49.37 Aligned_cols=119 Identities=22% Similarity=0.215 Sum_probs=93.9
Q ss_pred HHHHHHhhhhccccchhhHHHHhhhhccc-CccHHHHhhccccchhhhhhhhhhhhcccccccccccccccCcccccCce
Q 017291 139 FVEFLERSCTAEFSGFLLYKELGRRLKKT-NPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPK 217 (374)
Q Consensus 139 FidFLerScTaEFSGflLYKEl~rrlk~~-NP~lae~F~lMaRDEARHAGFLNkal~Df~l~lDLgfLtk~kkYTfF~Pk 217 (374)
..+.|......|......|..+++..+.. .|.++..|...|.+|..||+-+-+.+.... =.++
T Consensus 2 ~~~~L~~a~~~E~~a~~~Y~~~a~~a~~eG~~~~A~~f~~~a~eE~~HA~~~~~~l~~i~----------------~~~~ 65 (123)
T cd01046 2 LEEDLEANFKGETTEVGMYLAMARVAQREGYPEVAEELKRIAMEEAEHAARFAELLGKVS----------------EDTK 65 (123)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCc----------------ccHH
Confidence 35778888899999999999999988766 799999999999999999999998764311 2234
Q ss_pred eeeeehhcccccchhhhHHHHhHhhhCCCCcccchhhhhhhhhcccccchhHHHHHHhh
Q 017291 218 FIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKA 276 (374)
Q Consensus 218 fIfYAtYLSEKIGYwRYItIyRHLe~~Pe~rf~PIFk~FE~WCqDEnRHGDfFaalmra 276 (374)
=++=+.+-.|+..+-.|--+++.-++-- .+=...||+.=|.+|-+|++.+..+|..
T Consensus 66 ~~le~a~~~E~~~~~~~~~~~~~A~~eg---d~~~~~~~~~~~~~E~~H~~~~~~~l~~ 121 (123)
T cd01046 66 ENLEMMLEGEAGANEGKKDAATEAKAEG---LDEAHDFFHEAAKDEARHGKMLKGLLER 121 (123)
T ss_pred HHHHHHHHhHHHHHHhHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555666677777777766776665544 5567788999999999999999988753
No 11
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=95.43 E-value=0.013 Score=42.99 Aligned_cols=55 Identities=25% Similarity=0.335 Sum_probs=48.5
Q ss_pred HHHHHHHHhhhhccccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhh
Q 017291 137 QIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGL 193 (374)
Q Consensus 137 ~~FidFLerScTaEFSGflLYKEl~rrlk~~NP~lae~F~lMaRDEARHAGFLNkal 193 (374)
....+-|..+...|=.|.-.|+++.+.+ .+|++++++.-+..||++|..++++.+
T Consensus 76 ~~~~~~l~~~~~~E~~~~~~y~~~~~~~--~d~~~~~~~~~~~~~E~~H~~~~~~~~ 130 (130)
T cd00657 76 DDPAEALRAALEVEARAIAAYRELIEQA--DDPELRRLLERILADEQRHAAWFRKLL 130 (130)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3456778888899999999999999988 499999999999999999999998764
No 12
>PF13668 Ferritin_2: Ferritin-like domain
Probab=95.24 E-value=0.014 Score=48.13 Aligned_cols=54 Identities=26% Similarity=0.352 Sum_probs=49.9
Q ss_pred HHHHHHhhhhccccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhc
Q 017291 139 FVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLS 194 (374)
Q Consensus 139 FidFLerScTaEFSGflLYKEl~rrlk~~NP~lae~F~lMaRDEARHAGFLNkal~ 194 (374)
-.+||.-+.+-|-.|.-.|+.+..++ +||.+..++.-++-.||||++.||..|.
T Consensus 83 ~~~~L~~A~~~E~~~~~~Y~g~~~~~--~~~~~~~~~~~i~~~Ea~H~~~ir~ll~ 136 (137)
T PF13668_consen 83 DASFLRLAYTLEDVGVSAYKGAAPQI--EDPELKALAASIAGVEARHAAWIRNLLG 136 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46788888899999999999999999 7999999999999999999999998875
No 13
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=95.17 E-value=0.011 Score=46.16 Aligned_cols=53 Identities=21% Similarity=0.305 Sum_probs=47.3
Q ss_pred HHhhhhccccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhcccc
Q 017291 143 LERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFN 197 (374)
Q Consensus 143 LerScTaEFSGflLYKEl~rrlk~~NP~lae~F~lMaRDEARHAGFLNkal~Df~ 197 (374)
|.....-|-.|--+|..++++. .||.++++|.-+|+||.+|+..|...+...|
T Consensus 3 l~~a~~~E~~~~~~Y~~~a~~~--~~~~~~~~~~~la~eE~~H~~~l~~~~~~~~ 55 (139)
T cd01045 3 LALAIKMEEEAAEFYLELAEKA--KDPELKKLFEELAEEEKEHAERLEELYEKLF 55 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHhHC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455567888899999999998 7889999999999999999999999999875
No 14
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=95.03 E-value=0.02 Score=47.55 Aligned_cols=127 Identities=16% Similarity=0.101 Sum_probs=96.0
Q ss_pred HHHHHhhhhccccchhhHHHHhhhhccc-CccHHHHhhccccchhhhhhhhhhhhcccccccccccccccCcccccCcee
Q 017291 140 VEFLERSCTAEFSGFLLYKELGRRLKKT-NPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKF 218 (374)
Q Consensus 140 idFLerScTaEFSGflLYKEl~rrlk~~-NP~lae~F~lMaRDEARHAGFLNkal~Df~l~lDLgfLtk~kkYTfF~Pkf 218 (374)
++-|.+....|+...-.|..+++-.++. -|.++..|..-|-+|..||.=+-+.|.+.|...+ + -...+. ...=
T Consensus 3 ~~~L~~a~~~E~~a~~~Y~~~a~~a~~~g~~~~a~~f~~~a~eE~~HA~~~~~~l~~l~g~~~-~---~~~~~~--~~~~ 76 (134)
T cd01041 3 EKNLLAAFAGESQARNRYTYFAEKARKEGYEQIARLFRATAENEKEHAKGHFKLLKGLGGGDT-G---PPIGIG--DTLE 76 (134)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-C---CCCCcc--hHHH
Confidence 3567788899999999999999988766 6999999999999999999988899999887766 1 111111 2233
Q ss_pred eeeehhcccccch-hhhHHHHhHhhhCCCCcccchhhhhhhhhcccccchhHHHHHHh
Q 017291 219 IFYATYLSEKIGY-WRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMK 275 (374)
Q Consensus 219 IfYAtYLSEKIGY-wRYItIyRHLe~~Pe~rf~PIFk~FE~WCqDEnRHGDfFaalmr 275 (374)
++=..+=.|+..+ .+|=.++++-+++-+.. .-++|+.=+.||-+|++.|..+|.
T Consensus 77 ~l~~~~~~E~~e~~~~y~~~~~~A~~e~d~~---~~~~f~~i~~~E~~H~~~l~~~l~ 131 (134)
T cd01041 77 NLKAAIAGETYEYTEMYPEFAEVAEEEGFKE---AARSFEAIAEAEKVHAERYKKALE 131 (134)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455555666544 67777777777665554 557788899999999999998774
No 15
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=94.02 E-value=0.047 Score=46.11 Aligned_cols=127 Identities=17% Similarity=0.152 Sum_probs=77.3
Q ss_pred HHHHHhhhhccccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhcccccccccccccccCcccccCcee-
Q 017291 140 VEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKF- 218 (374)
Q Consensus 140 idFLerScTaEFSGflLYKEl~rrlk~~NP~lae~F~lMaRDEARHAGFLNkal~Df~l~lDLgfLtk~kkYTfF~Pkf- 218 (374)
+.=+.--|..|.+..+.|---+.-.+.++|.++++|..+|++|-+|+++|-+.+...|-.-...-..+. .+.+|.++.
T Consensus 18 ~~~~~~g~~~E~~ai~~Y~y~~~~~~~~~~~~k~~f~~lA~eE~~H~~~l~~~i~~lgg~p~~~~~~~~-~~~~~~~~~~ 96 (154)
T cd07908 18 LLDDYAGTNSELTAISQYIYQHLISEEKYPEIAETFLGIAIVEMHHLEILGQLIVLLGGDPRYRSSSSD-KFTYWTGKYV 96 (154)
T ss_pred HHHHhCCcchHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhccc-cCCcCCcccc
Confidence 333445667777777776655555555799999999999999999999999999998754443222221 122233332
Q ss_pred --------eeeehhcccccchhhhHHHHhHhhhC-CCCcccchhhhhhhhhcccccchhHHHHHH
Q 017291 219 --------IFYATYLSEKIGYWRYITIYRHLKAN-PEFQCYPIFKYFENWCQDENRHGDFFSALM 274 (374)
Q Consensus 219 --------IfYAtYLSEKIGYwRYItIyRHLe~~-Pe~rf~PIFk~FE~WCqDEnRHGDfFaalm 274 (374)
++....-.|+-+ |..|+.+.+. ++-... +-|+.=-.||-+|-+.|..++
T Consensus 97 ~~~~~~~~~L~~~~~~E~~a----i~~Y~~~~~~~~d~~~r---~ll~~I~~eE~~H~~~L~~~l 154 (154)
T cd07908 97 NYGESIKEMLKLDIASEKAA----IAKYKRQAETIKDPYIR---ALLNRIILDEKLHIKILEELL 154 (154)
T ss_pred CCccCHHHHHHHHHHHHHHH----HHHHHHHHHHcCCHHHH---HHHHHHHHHHHHHHHHHHhhC
Confidence 222223334444 3444444332 232223 345666778889988887653
No 16
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=93.92 E-value=0.069 Score=41.88 Aligned_cols=56 Identities=25% Similarity=0.451 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhhhhccccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhh
Q 017291 135 LRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKG 192 (374)
Q Consensus 135 ~R~~FidFLerScTaEFSGflLYKEl~rrlk~~NP~lae~F~lMaRDEARHAGFLNka 192 (374)
...-..+-|+-.-..|-.+...|.++.+.+ .+|.++++|.-|+.||.+|.-.|-+.
T Consensus 81 ~~~~~~~~l~~a~~~E~~~~~~Y~~~a~~~--~~~~~~~~~~~l~~~E~~H~~~l~~l 136 (137)
T PF02915_consen 81 TDENLEEALEMAIKEEKDAYEFYAELARKA--PDPEIRKLFEELAKEEKEHEDLLEKL 136 (137)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHT--TSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344577778888888999999999999998 78999999999999999999887654
No 17
>cd01049 RNRR2 Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain. Ribonucleotide Reductase, R2/beta subunit (RNRR2) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in all eukaryotes, many prokaryotes, several viruses, and few archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites. The beta subunit (R2) contains a diiron cluster that, in its reduced state, reacts with dioxygen to form a stable tyrosyl radical and a diiron(III) cluster. This essential tyrosyl radical is proposed to generate a thiyl radical, located on a cysteine residue in the R1 active site that initiates ribonucleotide reduction. The beta subunit is composed of 10-13 helices, the 8 longest helices form an alpha-
Probab=93.31 E-value=0.13 Score=47.24 Aligned_cols=58 Identities=36% Similarity=0.415 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhhhhcc----ccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhc
Q 017291 135 LRQIFVEFLERSCTAE----FSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLS 194 (374)
Q Consensus 135 ~R~~FidFLerScTaE----FSGflLYKEl~rrlk~~NP~lae~F~lMaRDEARHAGFLNkal~ 194 (374)
+.+.|.+.|+-+..-| +|||...--++||. .=|-+++++.+.+|||++|..|-=..++
T Consensus 141 ~~~~~~~~lv~~~~lEgi~f~s~F~~~~~l~~~g--~m~g~~~~i~~I~RDE~~H~~~~~~~~~ 202 (288)
T cd01049 141 TKESFAERLVAFAILEGIFFYSGFAAIFWLARRG--KMPGLAEIIELISRDESLHGDFACLLIR 202 (288)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CccchHHHhHHHHccHHHHHHHHHHHHH
Confidence 4456666666665555 58998888888875 7899999999999999999988644433
No 18
>PF11583 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_B 3CHT_A 3CHH_A 2JCD_B 3CHU_A.
Probab=93.20 E-value=0.052 Score=50.43 Aligned_cols=217 Identities=14% Similarity=0.129 Sum_probs=108.9
Q ss_pred HHHHHHHHHhhccCCCCccc-ChhH--HHHhhcCChHHHHH-----HHHHHHhhhhccccchh--hHHHHhhhhc-cc-C
Q 017291 101 EFEALLQEFKTDYNQTHFVR-NKEF--KEAADKMQGPLRQI-----FVEFLERSCTAEFSGFL--LYKELGRRLK-KT-N 168 (374)
Q Consensus 101 E~~Aml~Efr~DyNr~HFvR-~~eF--~~~~d~l~~e~R~~-----FidFLerScTaEFSGfl--LYKEl~rrlk-~~-N 168 (374)
+|++-. -.--|.++..|-- --.| ...|+.|+++.|.+ ++-|+..-.-.|- +.+ .+.-|.+..- .. .
T Consensus 34 dWd~~~-~~~~~~~~~~~p~~~~pl~gtp~~~~l~~~~r~~l~~~~~~~~~~~~i~~E~-~l~~~~~~~l~~~~~~~~~~ 111 (304)
T PF11583_consen 34 DWDAPD-DEDFDPDRPWLPPELLPLYGTPLWERLSEEQRIELLRHEWANYLSQGIWFEQ-GLVNPAFRMLARDRFPSDPD 111 (304)
T ss_dssp -----G-GTT--TTS-SS-GGGSTTTT-HHHHTS-HHHHHHHHHHHHHHHHHHHHHHHH-HTHHHHHHHHHTT-STTTT-
T ss_pred hhhhhh-cccCCCcccCCCcccCccCCCHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccCCC
Confidence 455554 3344666666521 1122 57899999998765 4556655555553 111 1133333332 12 2
Q ss_pred ccHHHHhhccccchhhhhhhhhhhhcccc----cccccccccccC----cccccCc----eeeeeehhcccccchhhhHH
Q 017291 169 PVVAEIFSLMSRDEARHAGFLNKGLSDFN----YALDLGFLTKAR----KYTFFKP----KFIFYATYLSEKIGYWRYIT 236 (374)
Q Consensus 169 P~lae~F~lMaRDEARHAGFLNkal~Df~----l~lDLgfLtk~k----kYTfF~P----kfIfYAtYLSEKIGYwRYIt 236 (374)
+...+-..--..||+||+=.-.+.+...| +....+...-.+ --..+.| -..|=.+.++|-+-. .
T Consensus 112 ~~~~~~~~~~i~DE~rH~~mf~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lv~Ee~i~----~ 187 (304)
T PF11583_consen 112 DDAKRYALTEIADEARHSLMFARAINRTGRRRGLAPLPPPYPPRRLLRRLARLLPPWERGLLFFAFALVAEEIID----A 187 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----S--HHHHHHHHHHHTS-SHHHHHHHHHHHHHHHHHSBH----H
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccCCCCCchHHHHHHHHHhcccccchHHHHHHHHHHHHHHH----H
Confidence 33444444557999999988888887777 322111111111 1112222 223344556666543 2
Q ss_pred HHhHhhhCCCCcccchhhhhhhhh-cccccchhHHHHHHhhCccchhhhhhHHHHHHHHHHhhhheeeccccchhhHHhc
Q 017291 237 IYRHLKANPEFQCYPIFKYFENWC-QDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVYVTMYLNDCQRTAFYEGI 315 (374)
Q Consensus 237 IyRHLe~~Pe~rf~PIFk~FE~WC-qDEnRHGDfFaalmraqP~ll~g~~~kLW~RFFLLsVfaTMyl~D~~R~~FY~al 315 (374)
..|.+.+.|. +.|+.+-.-.=. +||.||--|+..+++..=.-++. ..|.+.+-++ .+++-+++...-.+..|...
T Consensus 188 ~~~~~~~D~~--iqP~~r~v~~iH~~DEaRHi~f~~~~l~~~~~~l~~-~~r~~~~~~l-~~~~~~~~~~~~~~~~~~~~ 263 (304)
T PF11583_consen 188 YQREIARDET--IQPLVRQVMRIHVRDEARHIAFAREELRRVWPRLSP-AERRALAELL-PEAIRAFVASLINPWVYILA 263 (304)
T ss_dssp HHHHHHT-SS--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-H-HHHHHHHHHH-HHHHHHHHB--THHHHHHHH
T ss_pred HHHHhhcCCC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-HHHHHHHHHH-HHHHHHHHHHhcChHHHHHh
Confidence 3456666666 789977655544 79999999999888764333333 3555555554 34444555566667788877
Q ss_pred --CCChhhhhHHHH
Q 017291 316 --GLDTKEFDMHVI 327 (374)
Q Consensus 316 --GLD~~eyD~~Vi 327 (374)
|+|+.+=-....
T Consensus 264 ~~g~~~~~~~~~~~ 277 (304)
T PF11583_consen 264 GLGLDPRRAIRAAL 277 (304)
T ss_dssp HCT-TTHHHHHHHH
T ss_pred hcCCChHHHHHHHH
Confidence 998775443333
No 19
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=92.34 E-value=0.13 Score=42.62 Aligned_cols=133 Identities=22% Similarity=0.153 Sum_probs=95.1
Q ss_pred HHHHHHHHhhhhccccchhhHHHHhhhhccc-CccHHHHhhccccchhhhhhhhhhhhcccccccccccccccCcccccC
Q 017291 137 QIFVEFLERSCTAEFSGFLLYKELGRRLKKT-NPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFK 215 (374)
Q Consensus 137 ~~FidFLerScTaEFSGflLYKEl~rrlk~~-NP~lae~F~lMaRDEARHAGFLNkal~Df~l~lDLgfLtk~kkYTfF~ 215 (374)
...++.|..-...|+...+.|+-++..+++. -|.+++.|.-.|.||-+||.-|-+-+.+.|-...++-+.+-+.. ..
T Consensus 4 ~~~~~~Ln~~l~~E~~a~~~Y~~~a~~~~~~~~~~~~~~f~~~a~ee~~Ha~~lae~i~~lGg~p~~~~~~~~~~~--~~ 81 (153)
T cd00907 4 PKVIEALNKALTGELTAINQYFLHARMLEDWGLEKLAERFRKESIEEMKHADKLIERILFLEGLPNLQRLGKLRIG--ED 81 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcCCCCCcC--CC
Confidence 4578899999999999999999999999664 56899999999999999999999999999987776544322111 01
Q ss_pred ceeeeeehhccccc-chhhhHHHHhHhhhCCC-CcccchhhhhhhhhcccccchhHHHHHHhh
Q 017291 216 PKFIFYATYLSEKI-GYWRYITIYRHLKANPE-FQCYPIFKYFENWCQDENRHGDFFSALMKA 276 (374)
Q Consensus 216 PkfIfYAtYLSEKI-GYwRYItIyRHLe~~Pe-~rf~PIFk~FE~WCqDEnRHGDfFaalmra 276 (374)
+. .-|..=+ .+.=.+..|+++-+.-+ ..-...-++|+..-+||-+|..+|..++.-
T Consensus 82 ~~-----~~l~~~l~~E~~~~~~y~~~~~~A~~~~D~~t~~~l~~~~~~e~~h~~~l~~~l~~ 139 (153)
T cd00907 82 VP-----EMLENDLALEYEAIAALNEAIALCEEVGDYVSRDLLEEILEDEEEHIDWLETQLDL 139 (153)
T ss_pred HH-----HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 0011111 12345677888744222 234456667777889999999999987764
No 20
>cd07911 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like protein, Mn/Fe-binding domain. Rv0233 is a Mycobacterium tuberculosis ribonucleotide reductase R2 protein with a heterodinuclear manganese/iron-carboxylate cofactor located in its metal center. The Rv0233-like family may represent a structural/functional counterpart of the evolutionary ancestor of the RNRR2's (Ribonucleotide Reductase, R2/beta subunit) and the bacterial multicomponent monooxygenases. RNRR2s belong to a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in prokaryotes and archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites.
Probab=91.45 E-value=0.093 Score=48.90 Aligned_cols=43 Identities=19% Similarity=0.159 Sum_probs=33.9
Q ss_pred ccchhh-HHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhcc
Q 017291 151 FSGFLL-YKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSD 195 (374)
Q Consensus 151 FSGflL-YKEl~rrlk~~NP~lae~F~lMaRDEARHAGFLNkal~D 195 (374)
+|||.. +.-+++|. +-|-+++++.+.+|||+||-.|.=..++.
T Consensus 160 ~sgF~~~~~~l~~~g--~m~g~~~~i~~I~RDE~~H~~fg~~l~~~ 203 (280)
T cd07911 160 ETGYYAWRTICEKRG--ILPGMQEGIRRLGDDESRHIAWGTFTCRR 203 (280)
T ss_pred HHHHHHHHHHHhhcC--CCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678765 33576665 78999999999999999999887655554
No 21
>PRK08326 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=90.64 E-value=1.8 Score=41.67 Aligned_cols=199 Identities=13% Similarity=0.084 Sum_probs=104.8
Q ss_pred HHhhcCChHHHHHHHHHHHhhhhccccchhhHHHHhhhhcc--c--CccHHHHhhccccchhhhhhhhhhhhcccccccc
Q 017291 126 EAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKK--T--NPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALD 201 (374)
Q Consensus 126 ~~~d~l~~e~R~~FidFLerScTaEFSGflLYKEl~rrlk~--~--NP~lae~F~lMaRDEARHAGFLNkal~Df~l~lD 201 (374)
.+|..|++..|..+.--|--=..+|-. | -..|.+-+.. . .|.++-.....+-+||+|+-+-..-+..+|..=+
T Consensus 51 ~dw~~Lt~~Er~~~~~ila~f~~~d~~--V-~~nl~~~i~~~~~~~~~e~~~~l~~q~~~EaiH~e~Y~~~le~l~~~~~ 127 (311)
T PRK08326 51 EDWEKLSDEERDYATRLCAQFIAGEEA--V-TLDIQPLISAMAAEGRLEDEMYLTQFAFEEAKHTEAFRRWFDAVGVTED 127 (311)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHhhhHH--H-HHHHHHHHhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 577889998888765322221222310 1 1222221210 1 3788888888999999999998888876666543
Q ss_pred cccccc-cCccc--cc---------------Cceee---eeehhcccccc-hhhhHHHHhHhhhCCCCcccc-hhhhhhh
Q 017291 202 LGFLTK-ARKYT--FF---------------KPKFI---FYATYLSEKIG-YWRYITIYRHLKANPEFQCYP-IFKYFEN 258 (374)
Q Consensus 202 LgfLtk-~kkYT--fF---------------~PkfI---fYAtYLSEKIG-YwRYItIyRHLe~~Pe~rf~P-IFk~FE~ 258 (374)
+..+.+ ...|. ++ +.+++ .-..++-|.|= |-=|..|+-.|.+.+- -| +=+=++-
T Consensus 128 ~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~a~v~~~~~iEGi~f~sgF~~~~~~l~~~~~---mpgl~~~i~~ 204 (311)
T PRK08326 128 LSVYTDDNPSYRQIFYEELPAALNRLSTDPSPENQVRASVTYNHVVEGVLAETGYYAWRKICVTRGI---LPGLQELVRR 204 (311)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCcHHHHHHH
Confidence 322111 00000 00 00111 00023455543 3333333334444221 22 2223344
Q ss_pred hhcccccchhHHHHHHh----hCccchh---hhhhHHHHHHHHHHhhhheeeccccchhhHHh-cCCChhhhhHHHHHHh
Q 017291 259 WCQDENRHGDFFSALMK----AQPQFLN---DWKAKLWARFFCLSVYVTMYLNDCQRTAFYEG-IGLDTKEFDMHVIIEV 330 (374)
Q Consensus 259 WCqDEnRHGDfFaalmr----aqP~ll~---g~~~kLW~RFFLLsVfaTMyl~D~~R~~FY~a-lGLD~~eyD~~Vi~~T 330 (374)
=..||.+|+.|...+++ .+|.+.. .+...++....=+-=+ ..+.... .- +||++.+....|-..+
T Consensus 205 I~RDE~~H~~fg~~l~~~l~~e~p~~~~~~~~~i~el~~~av~~~~~----~~~~~~~---~i~~Gl~~~~~~~Yi~y~a 277 (311)
T PRK08326 205 IGDDERRHIAWGTYTCRRLVAADDSNWDVFEERMNELLPLALGLIDE----IFALYGD---QIPFELSNDEFVDYAADRG 277 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHHHH----HHHhccC---cccCCCCHHHHHHHHHHHH
Confidence 46899999999988776 4676543 3445555544433111 1111100 13 5999999999999999
Q ss_pred hHHHHHH
Q 017291 331 SLWLSLL 337 (374)
Q Consensus 331 N~ta~r~ 337 (374)
|.-...|
T Consensus 278 n~RL~~i 284 (311)
T PRK08326 278 QRRLGAI 284 (311)
T ss_pred HHHHHHh
Confidence 8766554
No 22
>PRK08326 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=90.16 E-value=0.15 Score=48.98 Aligned_cols=43 Identities=21% Similarity=0.233 Sum_probs=33.5
Q ss_pred cccchhhH-HHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhc
Q 017291 150 EFSGFLLY-KELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLS 194 (374)
Q Consensus 150 EFSGflLY-KEl~rrlk~~NP~lae~F~lMaRDEARHAGFLNkal~ 194 (374)
=+|||..+ .=++||- +=|-+++++.+.+|||+||..|.=..++
T Consensus 178 f~sgF~~~~~~l~~~~--~mpgl~~~i~~I~RDE~~H~~fg~~l~~ 221 (311)
T PRK08326 178 AETGYYAWRKICVTRG--ILPGLQELVRRIGDDERRHIAWGTYTCR 221 (311)
T ss_pred HHHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888875 4676654 6799999999999999999988644333
No 23
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1
Probab=89.72 E-value=0.16 Score=49.54 Aligned_cols=49 Identities=22% Similarity=0.326 Sum_probs=41.0
Q ss_pred HhhhhccccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhh
Q 017291 144 ERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKG 192 (374)
Q Consensus 144 erScTaEFSGflLYKEl~rrlk~~NP~lae~F~lMaRDEARHAGFLNka 192 (374)
+=-|.-|-...+-|..+++..+...|.|+++-+..|+||+||..|--+-
T Consensus 153 ~y~~fqE~aT~v~y~nl~~~a~~gdPvL~~i~~~IA~DE~rH~~fy~~~ 201 (297)
T cd01050 153 VYTSFQELATRISHRNTARLAGAGDPVLAKLLGRIAADEARHEAFYRDI 201 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345667777899999999887669999999999999999999886544
No 24
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=89.55 E-value=0.25 Score=44.59 Aligned_cols=57 Identities=23% Similarity=0.419 Sum_probs=50.4
Q ss_pred HHHHHHhhhhccccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhcccc
Q 017291 139 FVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFN 197 (374)
Q Consensus 139 FidFLerScTaEFSGflLYKEl~rrlk~~NP~lae~F~lMaRDEARHAGFLNkal~Df~ 197 (374)
-.|-|.-+.-+|..+.--|.++..|+ .|+.++++|.-||+||.||.|-+-+-+...+
T Consensus 25 ~~e~L~~Ai~~E~eA~~fY~~lae~~--~~~~~rk~~~~la~eE~~H~~~f~~l~~~~~ 81 (176)
T COG1633 25 IEELLAIAIRGELEAIKFYEELAERI--EDEEIRKLFEDLADEEMRHLRKFEKLLEKLT 81 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc--CCHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56777888899999999999999999 8899999999999999999998877665544
No 25
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=89.35 E-value=0.3 Score=38.12 Aligned_cols=51 Identities=24% Similarity=0.401 Sum_probs=45.0
Q ss_pred HHHHHHhhhhccccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhh
Q 017291 139 FVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNK 191 (374)
Q Consensus 139 FidFLerScTaEFSGflLYKEl~rrlk~~NP~lae~F~lMaRDEARHAGFLNk 191 (374)
..+-|+.+...|=.+.-.|.++.... .+|.++++|.-|+.||.+|..-|-+
T Consensus 87 ~~~~l~~a~~~E~~~~~~Y~~~~~~~--~d~~~~~~~~~l~~~E~~H~~~l~~ 137 (139)
T cd01045 87 PLEALRLAIEIEKDAIEFYEELAEKA--EDPEVKKLFEELAEEERGHLRLLEE 137 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888889999999999999987 7899999999999999999987654
No 26
>PRK10635 bacterioferritin; Provisional
Probab=88.73 E-value=0.49 Score=41.79 Aligned_cols=135 Identities=14% Similarity=0.042 Sum_probs=114.4
Q ss_pred HHHHHHHHhhhhccccchhhHHHHhhhhccc-CccHHHHhhccccchhhhhhhhhhhhcccccccccccccccCcccccC
Q 017291 137 QIFVEFLERSCTAEFSGFLLYKELGRRLKKT-NPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFK 215 (374)
Q Consensus 137 ~~FidFLerScTaEFSGflLYKEl~rrlk~~-NP~lae~F~lMaRDEARHAGFLNkal~Df~l~lDLgfLtk~kkYTfF~ 215 (374)
...++.|-+-.+.|+.....|-=.++-+++- -+.+++-|..=|.+|-+||.-|-+-+-+.|...++.-+.+-+.-+ .
T Consensus 5 ~~vi~~LN~~L~~El~Ai~QY~~ha~~~~~~G~~~la~~~~~ea~eEm~HA~~l~eRIl~LgG~P~~~~~~~~~~g~--~ 82 (158)
T PRK10635 5 VKIINYLNKLLGNELVAINQYFLHARMFKNWGLMRLNDVEYHESIDEMKHADKYIERILFLEGIPNLQDLGKLNIGE--D 82 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCC--C
Confidence 3578999999999999999999888877654 466787777779999999999999999999999999886665543 6
Q ss_pred ceeeeeehhcccccchhhhHHHHhHhhhCCCCcccchhhhhhhhhcccccchhHHHHHHhh
Q 017291 216 PKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKA 276 (374)
Q Consensus 216 PkfIfYAtYLSEKIGYwRYItIyRHLe~~Pe~rf~PIFk~FE~WCqDEnRHGDfFaalmra 276 (374)
++=++-+.+=.|+.+=.+|=.+.++-++.-++.-+-+|.| -..||-.|-|.+...+.-
T Consensus 83 v~eml~~dl~~E~~ai~~y~e~i~~a~~~~D~~s~~ll~~---iL~dEe~H~~~le~~l~~ 140 (158)
T PRK10635 83 VEEMLRSDLRLELEGAKDLREAIAYADSVHDYVSRDMMIE---ILADEEGHIDWLETELDL 140 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 7777888899999999999999999998888887777666 578999999999877653
No 27
>PRK07209 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=88.41 E-value=0.36 Score=47.51 Aligned_cols=54 Identities=30% Similarity=0.398 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHh-hhhcc----ccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhh
Q 017291 134 PLRQIFVEFLER-SCTAE----FSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFL 189 (374)
Q Consensus 134 e~R~~FidFLer-ScTaE----FSGflLYKEl~rrlk~~NP~lae~F~lMaRDEARHAGFL 189 (374)
+.++.|+.-|+- +|.-| +|||...--++||- +=|-+++++.+.+|||..|..|.
T Consensus 197 ~~~~~~~~~lva~~~ilEGi~FysgFa~~~~l~r~g--~M~G~~~~i~~I~RDE~~H~~f~ 255 (369)
T PRK07209 197 ENDQKLLRNLIAFYCIMEGIFFYVGFTQILSLGRQN--KMTGIAEQYQYILRDESMHLNFG 255 (369)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--CcccHHHHHHHHHHHHHHHHHHH
Confidence 455566666664 56545 78888877888865 78999999999999999999773
No 28
>PF00268 Ribonuc_red_sm: Ribonucleotide reductase, small chain; InterPro: IPR000358 Ribonucleotide reductase (1.17.4.1 from EC) [, ] catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides: 2'-deoxyribonucleoside diphosphate + oxidized thioredoxin + H2O = ribonucleoside diphosphate + reduced thioredoxin It provides the precursors necessary for DNA synthesis. RNRs divide into three classes on the basis of their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, bacteriophage and viruses, use a diiron-tyrosyl radical, Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria and bacteriophage, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. Ribonucleotide reductase is an oligomeric enzyme composed of a large subunit (700 to 1000 residues) and a small subunit (300 to 400 residues) - class II RNRs are less complex, using the small molecule B12 in place of the small chain []. The small chain binds two iron atoms [] (three Glu, one Asp, and two His are involved in metal binding) and contains an active site tyrosine radical. The regions of the sequence that contain the metal-binding residues and the active site tyrosine are conserved in ribonucleotide reductase small chain from prokaryotes, eukaryotes and viruses. We have selected one of these regions as a signature pattern. It contains the active site residue as well as a glutamate and a histidine involved in the binding of iron.; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0009186 deoxyribonucleoside diphosphate metabolic process, 0055114 oxidation-reduction process; PDB: 1JK0_B 1SMS_B 2VUX_B 4DJN_B 3HF1_B 2RCC_B 2BQ1_I 1R2F_A 2R2F_A 2O1Z_A ....
Probab=88.39 E-value=1.4 Score=40.96 Aligned_cols=199 Identities=17% Similarity=0.126 Sum_probs=111.5
Q ss_pred HHHhhcCChHHHHHHHHHHHhhhhcc-ccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhccccccc---
Q 017291 125 KEAADKMQGPLRQIFVEFLERSCTAE-FSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYAL--- 200 (374)
Q Consensus 125 ~~~~d~l~~e~R~~FidFLerScTaE-FSGflLYKEl~rrlk~~NP~lae~F~lMaRDEARHAGFLNkal~Df~l~l--- 200 (374)
..+|..|+++.|..+..-|--=+.+| --|--+--.|.+.+ ++|.+.-++...+-.|+.|+-+-+..+.-++-+.
T Consensus 42 ~~~~~~Ls~~e~~~~~~~l~~~~~~D~~v~~~l~~~i~~~~--~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~~~ 119 (281)
T PF00268_consen 42 IKDWKKLSEEEREAYKRILAFFAQLDSLVSENLLPNIMPEI--TSPEIRAFLTFQAFMEAIHAESYSYILDSLGNDPKER 119 (281)
T ss_dssp HHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHH
Confidence 45788899999887765443222222 11122235666667 6899999999999999999988888777666111
Q ss_pred --------ccccccccC-----ccc---ccCceeeeeehhcccccc-hhhhHHHHhHhhhCCCCcccchhhhhhhhhccc
Q 017291 201 --------DLGFLTKAR-----KYT---FFKPKFIFYATYLSEKIG-YWRYITIYRHLKANPEFQCYPIFKYFENWCQDE 263 (374)
Q Consensus 201 --------DLgfLtk~k-----kYT---fF~PkfIfYAtYLSEKIG-YwRYItIyRHLe~~Pe~rf~PIFk~FE~WCqDE 263 (374)
+...|.+.- .|. =+.-+.|++ ++-|.|- |.=|..|+ +|.+. ..+--+-+=++-=+.||
T Consensus 120 ~~~~~~~~~~~~l~~k~~~i~~~~~~~~~~~~~lv~~--~~lEgi~f~s~F~~~~-~l~~~--g~m~g~~~~i~~I~RDE 194 (281)
T PF00268_consen 120 DEIFDWVEEDPELQKKLDWIEKWYEDNDSLAEKLVAS--VILEGILFYSGFAYIL-YLARQ--GKMPGLAEIIKLIMRDE 194 (281)
T ss_dssp HHHHHHHHHSHHHHHHHHHHHHHHCSSSHHHHHHHHH--HHHHHTTTHHHHHHHH-HHHHT--TSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHhhHHHHHHhhchhhhhHHHHHHHH--HHHHHHHHHHHHHHHH-HHHHc--CcchhHHHHHHHHHHHH
Confidence 111221110 111 011232322 3446662 33344454 56653 34555556666678999
Q ss_pred ccchhHHHHHHhhCc---cchhhhhhHHHHHHHHHHhhh-heeeccccchhhHHhcCCChhhhhHHHHHHhhHHHHHH
Q 017291 264 NRHGDFFSALMKAQP---QFLNDWKAKLWARFFCLSVYV-TMYLNDCQRTAFYEGIGLDTKEFDMHVIIEVSLWLSLL 337 (374)
Q Consensus 264 nRHGDfFaalmraqP---~ll~g~~~kLW~RFFLLsVfa-TMyl~D~~R~~FY~alGLD~~eyD~~Vi~~TN~ta~r~ 337 (374)
.+|++|...+++.=. +....+...+ |-=+|=. .-|+.+.-..+ .+||++.+....|=-.+|.....+
T Consensus 195 ~~H~~~~~~l~~~l~~e~~~~~~~i~~l----~~eav~~E~~~~~~~~~~~---~~gl~~~~~~~yi~y~an~~L~~l 265 (281)
T PF00268_consen 195 SLHVEFGIYLFRTLVEENKPEEEEIYEL----FDEAVELEIEFIDDILPGD---IIGLNKEDIKQYIKYNANRRLRNL 265 (281)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHH----HHHHHHHHHHHHHTTSTGG---GTTBSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHH----HHHHHHHHHHHHHHHhcCC---cCCCcHHHHHHHHHHHHHHHHHHC
Confidence 999999988875411 2222222111 1111111 11222222211 489999999999988888876653
No 29
>cd01049 RNRR2 Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain. Ribonucleotide Reductase, R2/beta subunit (RNRR2) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in all eukaryotes, many prokaryotes, several viruses, and few archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites. The beta subunit (R2) contains a diiron cluster that, in its reduced state, reacts with dioxygen to form a stable tyrosyl radical and a diiron(III) cluster. This essential tyrosyl radical is proposed to generate a thiyl radical, located on a cysteine residue in the R1 active site that initiates ribonucleotide reduction. The beta subunit is composed of 10-13 helices, the 8 longest helices form an alpha-
Probab=86.99 E-value=2.1 Score=39.47 Aligned_cols=195 Identities=17% Similarity=0.177 Sum_probs=106.2
Q ss_pred HHHhhcCChHHHHHHHHHHHh-----hhhccccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhcccccc
Q 017291 125 KEAADKMQGPLRQIFVEFLER-----SCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYA 199 (374)
Q Consensus 125 ~~~~d~l~~e~R~~FidFLer-----ScTaEFSGflLYKEl~rrlk~~NP~lae~F~lMaRDEARHAGFLNkal~Df~l~ 199 (374)
.++|..|+++.|..+..-|-- |+.++. + .++..+.- .+|..+-.+..-+-+|++|+-+-+..+..++..
T Consensus 34 ~~~~~~l~~~er~~~~~~la~~~~~d~~v~~~----~-~~~~~~~~-~~~e~~~~~~~q~~~E~iH~e~Ys~il~~l~~~ 107 (288)
T cd01049 34 LKDWEKLTEAERHFIKRVLAFLAALDSIVGEN----L-VELFSRHV-QIPEARAFYGFQAFMENIHSESYSYILDTLGKD 107 (288)
T ss_pred HHHHhHCCHHHHHHHHHHHHHHHHHHHHHHHh----H-HHHHHHHc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 468889999998877654322 222222 1 22222221 589999999999999999999999888888764
Q ss_pred ----------cccccccccCcc--------------cccCceeeeeehhcccccchhhhHHHHhHhhhCCCCcccchhhh
Q 017291 200 ----------LDLGFLTKARKY--------------TFFKPKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKY 255 (374)
Q Consensus 200 ----------lDLgfLtk~kkY--------------TfF~PkfIfYAtYLSEKIGYwRYItIyRHLe~~Pe~rf~PIFk~ 255 (374)
.+...|.+.-++ ++. -+.|.| ++-|.|=+-==..+...|.++. ..-=+-+-
T Consensus 108 ~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~~~~-~~lv~~--~~lEgi~f~s~F~~~~~l~~~g--~m~g~~~~ 182 (288)
T cd01049 108 EERDELFEAIETDPALKKKADWILRWYDNLDDNTKESFA-ERLVAF--AILEGIFFYSGFAAIFWLARRG--KMPGLAEI 182 (288)
T ss_pred ccHHHHHHHHhcCHHHHHHHHHHHHHHHhhhhchHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHHHHCC--CccchHHH
Confidence 122223221111 111 112222 4555553321122234566653 22223334
Q ss_pred hhhhhcccccchhHHHHHHhh----Cccch----hhhhhHHHHHHHHHHhhhheeeccccchhhHHhcCCChhhhhHHHH
Q 017291 256 FENWCQDENRHGDFFSALMKA----QPQFL----NDWKAKLWARFFCLSVYVTMYLNDCQRTAFYEGIGLDTKEFDMHVI 327 (374)
Q Consensus 256 FE~WCqDEnRHGDfFaalmra----qP~ll----~g~~~kLW~RFFLLsVfaTMyl~D~~R~~FY~alGLD~~eyD~~Vi 327 (374)
++.=..||.+|+.|...+++. .|++. ..|...+...-.-+= .=|+.+.-.. ..+|++..+....|-
T Consensus 183 i~~I~RDE~~H~~~~~~~~~~l~~~~~~~~~~~~~~~v~~l~~~av~~E---~~~~~~~~~~---~~~g~~~~~~~~yi~ 256 (288)
T cd01049 183 IELISRDESLHGDFACLLIRELLNENPELFTEEFKEEVYELIKEAVELE---KEFARDLLPD---GILGLNKEDMKQYIE 256 (288)
T ss_pred hHHHHccHHHHHHHHHHHHHHHHHhCccccchhHHHHHHHHHHHHHHHH---HHHHHHhcCC---CCCCcCHHHHHHHHH
Confidence 455578999999998776654 45432 333333333222110 0111211111 168999998888888
Q ss_pred HHhhHHHHH
Q 017291 328 IEVSLWLSL 336 (374)
Q Consensus 328 ~~TN~ta~r 336 (374)
-..|.....
T Consensus 257 y~an~~l~~ 265 (288)
T cd01049 257 YVANRRLEN 265 (288)
T ss_pred HHHHHHHHH
Confidence 777776554
No 30
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=86.05 E-value=0.62 Score=39.39 Aligned_cols=52 Identities=19% Similarity=0.305 Sum_probs=46.0
Q ss_pred HHHHHHhhhhccccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhh
Q 017291 139 FVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKG 192 (374)
Q Consensus 139 FidFLerScTaEFSGflLYKEl~rrlk~~NP~lae~F~lMaRDEARHAGFLNka 192 (374)
..+-|......|-.+.-.|+++.+++ .+|.+++++..++.||.+|.-.|-+.
T Consensus 102 ~~~~L~~~~~~E~~ai~~Y~~~~~~~--~d~~~r~ll~~I~~eE~~H~~~L~~~ 153 (154)
T cd07908 102 IKEMLKLDIASEKAAIAKYKRQAETI--KDPYIRALLNRIILDEKLHIKILEEL 153 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56678888899999999999999987 78999999999999999999877543
No 31
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=85.69 E-value=0.39 Score=37.89 Aligned_cols=131 Identities=16% Similarity=0.217 Sum_probs=100.4
Q ss_pred HHHHHhhhhccccchhhHHHHhhhhcccC-ccHHHHhhccccchhhhhhhhhhhhccccc-----ccccccccccCcccc
Q 017291 140 VEFLERSCTAEFSGFLLYKELGRRLKKTN-PVVAEIFSLMSRDEARHAGFLNKGLSDFNY-----ALDLGFLTKARKYTF 213 (374)
Q Consensus 140 idFLerScTaEFSGflLYKEl~rrlk~~N-P~lae~F~lMaRDEARHAGFLNkal~Df~l-----~lDLgfLtk~kkYTf 213 (374)
|+=|.+-...|+.+...|+-++-.+++.| |.+++.|.-+|-+|-.|+.-+.+-+.+.|. ..++.-+++... +
T Consensus 1 i~~Ln~~l~~e~~~~~~y~~~~~~~~~~~~~~l~~~~~~~a~e~~~h~~~l~e~i~~lgg~p~~~~~~~~~~~~~~~--~ 78 (142)
T PF00210_consen 1 IEALNEQLALELQASQQYLNMHWNFDGPNFPGLAKFFQDQAEEEREHADELAERILMLGGKPSGSPVEIPEIPKPPE--W 78 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-SSTSHHHHHHHHSSSS--S
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHhHHHHHHHHHHHHHHHHHHhcCCCCCCCcHHHhhhhhcccc--C
Confidence 34566777889999999999998887664 889999999999999999999999999999 555555555555 3
Q ss_pred cCceeeeeehhcccccchhhhHHHHhHhhhCCCCcccchhhhhhhhhcccccchhHHHHHHh
Q 017291 214 FKPKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMK 275 (374)
Q Consensus 214 F~PkfIfYAtYLSEKIGYwRYItIyRHLe~~Pe~rf~PIFk~FE~WCqDEnRHGDfFaalmr 275 (374)
-.|+-++=..-=.||-....|--+...-++.-+.....+ ++..=.+|.+|-..+...+.
T Consensus 79 ~~~~~~l~~~l~~e~~~~~~~~~l~~~a~~~~D~~t~~~---~~~~l~~~~~~~~~l~~~l~ 137 (142)
T PF00210_consen 79 TDPREALEAALEDEKEIIEEYRELIKLAEKEGDPETADF---LDEFLEEEEKHIWMLQAHLT 137 (142)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 378878877777888888888888888887766555544 43334567777777776654
No 32
>PF00268 Ribonuc_red_sm: Ribonucleotide reductase, small chain; InterPro: IPR000358 Ribonucleotide reductase (1.17.4.1 from EC) [, ] catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides: 2'-deoxyribonucleoside diphosphate + oxidized thioredoxin + H2O = ribonucleoside diphosphate + reduced thioredoxin It provides the precursors necessary for DNA synthesis. RNRs divide into three classes on the basis of their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, bacteriophage and viruses, use a diiron-tyrosyl radical, Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria and bacteriophage, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. Ribonucleotide reductase is an oligomeric enzyme composed of a large subunit (700 to 1000 residues) and a small subunit (300 to 400 residues) - class II RNRs are less complex, using the small molecule B12 in place of the small chain []. The small chain binds two iron atoms [] (three Glu, one Asp, and two His are involved in metal binding) and contains an active site tyrosine radical. The regions of the sequence that contain the metal-binding residues and the active site tyrosine are conserved in ribonucleotide reductase small chain from prokaryotes, eukaryotes and viruses. We have selected one of these regions as a signature pattern. It contains the active site residue as well as a glutamate and a histidine involved in the binding of iron.; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0009186 deoxyribonucleoside diphosphate metabolic process, 0055114 oxidation-reduction process; PDB: 1JK0_B 1SMS_B 2VUX_B 4DJN_B 3HF1_B 2RCC_B 2BQ1_I 1R2F_A 2R2F_A 2O1Z_A ....
Probab=84.55 E-value=0.46 Score=44.07 Aligned_cols=43 Identities=35% Similarity=0.412 Sum_probs=35.4
Q ss_pred ccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhcc
Q 017291 151 FSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSD 195 (374)
Q Consensus 151 FSGflLYKEl~rrlk~~NP~lae~F~lMaRDEARHAGFLNkal~D 195 (374)
+|||....-++++. .=|-+++++.+..|||++|..|.-..++.
T Consensus 165 ~s~F~~~~~l~~~g--~m~g~~~~i~~I~RDE~~H~~~~~~l~~~ 207 (281)
T PF00268_consen 165 YSGFAYILYLARQG--KMPGLAEIIKLIMRDESLHVEFGIYLFRT 207 (281)
T ss_dssp HHHHHHHHHHHHTT--SSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC--cchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888777788764 57999999999999999999987665543
No 33
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=84.18 E-value=0.6 Score=38.45 Aligned_cols=134 Identities=13% Similarity=0.131 Sum_probs=97.0
Q ss_pred HHHHHHHHHhhhhccccchhhHHHHhhhhccc-CccHHHHhhccccchhhhhhhhhhhhccccccccccccc---cc---
Q 017291 136 RQIFVEFLERSCTAEFSGFLLYKELGRRLKKT-NPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLT---KA--- 208 (374)
Q Consensus 136 R~~FidFLerScTaEFSGflLYKEl~rrlk~~-NP~lae~F~lMaRDEARHAGFLNkal~Df~l~lDLgfLt---k~--- 208 (374)
++..++.|-.-.+.|+.....|+-+...++.. -+.+++.|.-++.+|.+||--|-+-+.+.|-....+.-. .+
T Consensus 4 ~~~~~~~Ln~~la~e~~~~~~y~~~~~~~~g~~f~~l~~~~~~~~~ee~~Had~laEri~~lGg~p~~~~~~~~~~~~~~ 83 (148)
T cd01052 4 VDELIELLNKAFADEWLAYYYYTILAKHVKGPEGEGIKEELEEAAEEELNHAELLAERIYELGGTPPRDPKDWYEISGCK 83 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHhccc
Confidence 67789999999999999999999999999766 467999999999999999999999999999888775421 11
Q ss_pred -Ccc--cccCceeeeeehhcccccchhhhHHHHhHhhhCCCCcccchhhhhhhhhcccccchhHHHHH
Q 017291 209 -RKY--TFFKPKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSAL 273 (374)
Q Consensus 209 -kkY--TfF~PkfIfYAtYLSEKIGYwRYItIyRHLe~~Pe~rf~PIFk~FE~WCqDEnRHGDfFaal 273 (374)
..+ ....++=++-+.+=.|+..-..|--+.+.-+. .=+..-++++..-.||-.|=+.|.-|
T Consensus 84 ~~~~~~~~~~~~~~l~~~~~~e~~~i~~~~~~~~~a~~----~D~~t~~ll~~~l~de~~h~~~~~~~ 147 (148)
T cd01052 84 CGYLPPDPPDVKGILKVNLKAERCAIKVYKELCDMTHG----KDPVTYDLALAILNEEIEHEEDLEEL 147 (148)
T ss_pred ccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHcC----CChHHHHHHHHHHHHHHHHHHHHHhh
Confidence 111 22233334555555566555555555554322 33445556676778898888777654
No 34
>COG0208 NrdF Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism]
Probab=83.51 E-value=1.1 Score=44.88 Aligned_cols=55 Identities=38% Similarity=0.535 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhhhhcc----ccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhh
Q 017291 134 PLRQIFVEFLERSCTAE----FSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLN 190 (374)
Q Consensus 134 e~R~~FidFLerScTaE----FSGflLYKEl~rrlk~~NP~lae~F~lMaRDEARHAGFLN 190 (374)
++.+-+..=++-||.=| +|||-+.--++||- +-|-.++++++..|||+.|--|+-
T Consensus 171 ~~~~~~~~~~v~~~~lEgi~FYsGFa~~~~l~~r~--kM~g~a~iirlI~RDE~~H~~~~~ 229 (348)
T COG0208 171 PLEEFLLKLVVASVILEGILFYSGFAYPLYLARRG--KMPGTAEIIRLIIRDEALHLYFIG 229 (348)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666 79999999999998 789999999999999999976653
No 35
>PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=82.96 E-value=5.1 Score=38.27 Aligned_cols=196 Identities=14% Similarity=0.158 Sum_probs=106.3
Q ss_pred HHHhhcCChHHHHHHHHHHHh-hhhccccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhccccccc---
Q 017291 125 KEAADKMQGPLRQIFVEFLER-SCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYAL--- 200 (374)
Q Consensus 125 ~~~~d~l~~e~R~~FidFLer-ScTaEFSGflLYKEl~rrlk~~NP~lae~F~lMaRDEARHAGFLNkal~Df~l~l--- 200 (374)
..+|.+|+++.|..+..-|-- +..-..-|.-+-..+++.+ .+|.++-.+..++-.|+.|+-.-...+.-++..-
T Consensus 45 ~~dw~~Lt~~Er~~~~~~l~~~~~~D~~v~~~~~~~~~~~~--~~~E~~~~~~~q~~~E~iH~~sYs~il~tl~~~~~~~ 122 (324)
T PRK09614 45 LKDWKKLSDEEKNLYTRVFGGLTLLDTLQNNNGMPNLMPDI--TTPEEEAVLANIAFMEAVHAKSYSYIFSTLCSPEEID 122 (324)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHH
Confidence 458889999999876654432 1111222223345666667 5799999999999999999977666666555432
Q ss_pred -------ccccccccCc--ccccCc---e----eeeeehhcccccch-hhhHHHHhHhhhCCCCcccchhhhhhhhhccc
Q 017291 201 -------DLGFLTKARK--YTFFKP---K----FIFYATYLSEKIGY-WRYITIYRHLKANPEFQCYPIFKYFENWCQDE 263 (374)
Q Consensus 201 -------DLgfLtk~kk--YTfF~P---k----fIfYAtYLSEKIGY-wRYItIyRHLe~~Pe~rf~PIFk~FE~WCqDE 263 (374)
+...|.++-+ .+++.+ + -+. +.++-|.|=+ .=|..|| .|.++. ..--+-+-++-=..||
T Consensus 123 ~~f~~~~~~p~l~~K~~~i~~~~~~~~~~~~~~~~~-~~~~lEgi~f~sgF~~~~-~l~~~g--~m~g~~~~i~~I~RDE 198 (324)
T PRK09614 123 EAFEWAEENPYLQKKADIIQDFYEPLKKKILRKAAV-ASVFLEGFLFYSGFYYPL-YLARQG--KMTGTAQIIRLIIRDE 198 (324)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHH-HHHhCC--CcccHHHHHHHHHhhh
Confidence 2233333211 111111 1 001 1233444432 2333344 777743 3334444445556899
Q ss_pred ccchhHHHHHHh----hCccchhh----hhhHHHHHHHHHH-hhhheeeccccchhhHHhcCCChhhhhHHHHHHhhHHH
Q 017291 264 NRHGDFFSALMK----AQPQFLND----WKAKLWARFFCLS-VYVTMYLNDCQRTAFYEGIGLDTKEFDMHVIIEVSLWL 334 (374)
Q Consensus 264 nRHGDfFaalmr----aqP~ll~g----~~~kLW~RFFLLs-VfaTMyl~D~~R~~FY~alGLD~~eyD~~Vi~~TN~ta 334 (374)
..||.|+..+++ ..|++... |...+...-.=+= -|+..- |.-+| ++.+....|=-.+|...
T Consensus 199 ~~H~~f~~~l~~~l~~e~~~~~~~~~~~~v~~l~~~ave~E~~~~~~~---------~~~~G-~~~~~~~yi~y~an~~L 268 (324)
T PRK09614 199 SLHGYYIGYLFQEGLEELPELEQEELKDEIYDLLYELYENEEAYTELL---------YDIVG-LAEDVKKYIRYNANKRL 268 (324)
T ss_pred HHHHHHHHHHHHHHHHhCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHH---------HCcCC-CHHHHHHHHHHHHHHHH
Confidence 999999986555 66765442 3333322211110 011111 11677 77777766666666655
Q ss_pred HH
Q 017291 335 SL 336 (374)
Q Consensus 335 ~r 336 (374)
..
T Consensus 269 ~~ 270 (324)
T PRK09614 269 MN 270 (324)
T ss_pred HH
Confidence 44
No 36
>PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=81.50 E-value=0.8 Score=43.65 Aligned_cols=53 Identities=28% Similarity=0.324 Sum_probs=40.5
Q ss_pred HHHHHHHHhhhhcc----ccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhh
Q 017291 137 QIFVEFLERSCTAE----FSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNK 191 (374)
Q Consensus 137 ~~FidFLerScTaE----FSGflLYKEl~rrlk~~NP~lae~F~lMaRDEARHAGFLNk 191 (374)
+.+...|+-+..-| +|||...--+.+|. +=|-++++..+.+|||+.|..|.=.
T Consensus 151 ~~~~~~~~~~~~lEgi~f~sgF~~~~~l~~~g--~m~g~~~~i~~I~RDE~~H~~f~~~ 207 (324)
T PRK09614 151 KILRKAAVASVFLEGFLFYSGFYYPLYLARQG--KMTGTAQIIRLIIRDESLHGYYIGY 207 (324)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CcccHHHHHHHHHhhhHHHHHHHHH
Confidence 34555555555555 68888777888865 7899999999999999999988643
No 37
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=79.70 E-value=0.94 Score=50.06 Aligned_cols=52 Identities=21% Similarity=0.413 Sum_probs=44.4
Q ss_pred HHHHhhhhccccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhc
Q 017291 141 EFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLS 194 (374)
Q Consensus 141 dFLerScTaEFSGflLYKEl~rrlk~~NP~lae~F~lMaRDEARHAGFLNkal~ 194 (374)
|=|....-=|=.|.-.|++++.+. .||.++++|..||+.|.+|+-.|.+-++
T Consensus 863 eil~~Ai~mE~~g~~FY~~~A~~a--~~~~~K~lF~~LA~eE~~H~~~l~~~~~ 914 (1006)
T PRK12775 863 EAIRTAFEIELGGMAFYARAAKET--SDPVLKELFLKFAGMEQEHMATLARRYH 914 (1006)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555566888999999999997 7999999999999999999999877664
No 38
>PLN02492 ribonucleoside-diphosphate reductase
Probab=79.69 E-value=1.2 Score=42.91 Aligned_cols=37 Identities=30% Similarity=0.244 Sum_probs=32.2
Q ss_pred ccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhh
Q 017291 151 FSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFL 189 (374)
Q Consensus 151 FSGflLYKEl~rrlk~~NP~lae~F~lMaRDEARHAGFL 189 (374)
+|||...--+++|- +=|-++++..+.+|||+.|..|.
T Consensus 167 ~sgF~~~~~l~~~g--~m~g~~~~i~~I~RDE~~H~~~~ 203 (324)
T PLN02492 167 SGSFCAIFWLKKRG--LMPGLTFSNELISRDEGLHCDFA 203 (324)
T ss_pred hhhHHHHHHHHHcC--CCcchHHHHHHHHhhHHHHHHHH
Confidence 68887777888865 78999999999999999999776
No 39
>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: - Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: - Bacterial fatty acid desaturases. - Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. - Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 2. ; GO: 0045300 acyl-[acyl-carrier-protein] desaturase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 1OQ7_B 1AFR_A 2XZ0_B 1OQB_A 2J2F_E 1OQ4_B 1OQ9_A 2XZ1_A 1ZA0_A.
Probab=79.53 E-value=0.97 Score=45.09 Aligned_cols=46 Identities=30% Similarity=0.455 Sum_probs=35.4
Q ss_pred ccccchhhHHHHhhhhcc-cCccHHHHhhccccchhhhhhhhhhhhc
Q 017291 149 AEFSGFLLYKELGRRLKK-TNPVVAEIFSLMSRDEARHAGFLNKGLS 194 (374)
Q Consensus 149 aEFSGflLYKEl~rrlk~-~NP~lae~F~lMaRDEARHAGFLNkal~ 194 (374)
-|-.-++.|..++|..+. ..|.|+++-+.+|+||+||..|--+.++
T Consensus 163 QE~AT~vsh~n~~~~a~~~~DpvL~~il~~IA~DE~rH~~fy~~iv~ 209 (330)
T PF03405_consen 163 QERATQVSHRNTGRLAKQAGDPVLAQILGRIAADEARHEAFYRNIVE 209 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 344556777777777643 5899999999999999999988655443
No 40
>PTZ00211 ribonucleoside-diphosphate reductase small subunit; Provisional
Probab=78.99 E-value=1.2 Score=43.08 Aligned_cols=37 Identities=30% Similarity=0.245 Sum_probs=31.8
Q ss_pred ccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhh
Q 017291 151 FSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFL 189 (374)
Q Consensus 151 FSGflLYKEl~rrlk~~NP~lae~F~lMaRDEARHAGFL 189 (374)
+|||...-=++||. +=|-+++++.+.+|||+.|..|.
T Consensus 178 ~sgF~~~~~l~~~g--~m~g~~~~i~~I~RDE~~H~~f~ 214 (330)
T PTZ00211 178 SGSFCAIFWLKKRG--LMPGLTFSNELISRDEGLHTDFA 214 (330)
T ss_pred hhhHHHHHHHHhcC--CCcchHHHHHHHHhhHHHHHHHH
Confidence 67877776787765 78999999999999999999886
No 41
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=76.12 E-value=4.1 Score=34.13 Aligned_cols=133 Identities=14% Similarity=0.156 Sum_probs=85.1
Q ss_pred HHHHHHhhhhccccchhhHHHHhhhhccc-CccHHHHhhccccchhhhhhhhhhhhcccccccccccccccCcccccCce
Q 017291 139 FVEFLERSCTAEFSGFLLYKELGRRLKKT-NPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPK 217 (374)
Q Consensus 139 FidFLerScTaEFSGflLYKEl~rrlk~~-NP~lae~F~lMaRDEARHAGFLNkal~Df~l~lDLgfLtk~kkYTfF~Pk 217 (374)
.++-|.+=...|+.....|--++...++. -|.+++.|.-.|.+|..||.-+-+-|.+.|..+++.-+.+.+. ++=.|.
T Consensus 4 ~~~~Ln~~~~~El~A~~~Yl~~a~~~~~~~~~~~a~~f~~~a~eE~~HA~~l~~~i~~~gg~~~~~~~~~~~~-~~~~~~ 82 (156)
T cd01055 4 LEKALNEQINLELYSSYLYLAMAAWFDSKGLDGFANFFRVQAQEEREHAMKFFDYLNDRGGRVELPAIEAPPS-EFESLL 82 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeeCCCCCCCCc-ccCCHH
Confidence 45666666778888888888777666544 6899999999999999999999999999999998877665332 222232
Q ss_pred eeeeehhcccccchhhhHHHHhHhhhCCCCcccchhhhhhhhhcccccchhHHHHHHh
Q 017291 218 FIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMK 275 (374)
Q Consensus 218 fIfYAtYLSEKIGYwRYItIyRHLe~~Pe~rf~PIFk~FE~WCqDEnRHGDfFaalmr 275 (374)
=++=+..=.||----.|-.+.+.-+++-+ .-..++|+.--.||-.|.+-++.++.
T Consensus 83 ~~l~~al~~E~~~~~~~~~l~~~A~~~~D---~~~~~~l~~~l~~q~e~~~~~~~~l~ 137 (156)
T cd01055 83 EVFEAALEHEQKVTESINNLVDLALEEKD---YATFNFLQWFVKEQVEEEALARDILD 137 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC---HhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22211122233222234444444444433 33445565445677777777766654
No 42
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=75.20 E-value=2.6 Score=42.03 Aligned_cols=53 Identities=19% Similarity=0.166 Sum_probs=39.5
Q ss_pred HHHHHHHHHhhhhcc----ccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhh
Q 017291 136 RQIFVEFLERSCTAE----FSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLN 190 (374)
Q Consensus 136 R~~FidFLerScTaE----FSGflLYKEl~rrlk~~NP~lae~F~lMaRDEARHAGFLN 190 (374)
++.+.+-|+-|..-| +|||...--+++|- +=|-++++..+.+|||+.|..|.=
T Consensus 234 ~~~~~~~lv~~~~lEgi~Fys~Fa~~~~l~~~g--~m~g~~~~i~~I~RDE~lH~~~~~ 290 (410)
T PRK12759 234 RRGLGLCLAKTVFNEGVALFASFAMLLNFQRFG--KMKGMGKVVEWSIRDESMHVEGNA 290 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCeeHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444334 68888888888875 689999999999999999998853
No 43
>PRK07209 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=75.19 E-value=6.7 Score=38.79 Aligned_cols=198 Identities=18% Similarity=0.146 Sum_probs=105.0
Q ss_pred HHhh---cCChHHHHHHHHHHHhhhhccc-cchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhccccccc-
Q 017291 126 EAAD---KMQGPLRQIFVEFLERSCTAEF-SGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYAL- 200 (374)
Q Consensus 126 ~~~d---~l~~e~R~~FidFLerScTaEF-SGflLYKEl~rrlk~~NP~lae~F~lMaRDEARHAGFLNkal~Df~l~l- 200 (374)
++|. +|+++.|..+.--|---..+|- -|--+...+.+.+ ++|+++-.+...+-.|+.|+-.-...+.-+|..=
T Consensus 83 ~dw~~~~~Lt~~Er~~~~~il~ff~~~Ds~v~~nl~~~l~~~i--~~pE~r~~l~~q~~~E~iHs~sYs~ildtl~~~~~ 160 (369)
T PRK07209 83 ALWKSPNGLTEDERRIVKRNLGFFSTADSLVANNIVLAIYRHI--TNPECRQYLLRQAFEEAIHTHAYQYIVESLGLDEG 160 (369)
T ss_pred HHHccccCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 4675 4999999877654433223332 2333445666777 6899999999999999999976655555444422
Q ss_pred -------ccccccccCccc--cc----Cc-----------e----eeeeehhcccccc-hhhhHHHHhHhhhCCCCcccc
Q 017291 201 -------DLGFLTKARKYT--FF----KP-----------K----FIFYATYLSEKIG-YWRYITIYRHLKANPEFQCYP 251 (374)
Q Consensus 201 -------DLgfLtk~kkYT--fF----~P-----------k----fIfYAtYLSEKIG-YwRYItIyRHLe~~Pe~rf~P 251 (374)
+...|.|+-.|- ++ .| + .|-|+ ++-|.|= |.=|..|| .|.++ ...--
T Consensus 161 e~f~~~~~~p~l~~K~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lva~~-~ilEGi~FysgFa~~~-~l~r~--g~M~G 236 (369)
T PRK07209 161 EIFNMYHEVPSIRAKDEFLIPFTRSLTDPNFKTGTPENDQKLLRNLIAFY-CIMEGIFFYVGFTQIL-SLGRQ--NKMTG 236 (369)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHH-HHHHHHHHHHHHHHHH-Hhhhc--CCccc
Confidence 333344432220 00 00 0 00000 0112221 22233344 55553 23333
Q ss_pred hhhhhhhhhcccccchhHHHHH----HhhCccchhh----hhhHHHHHHHHH-HhhhheeeccccchhhHHhcCCChhhh
Q 017291 252 IFKYFENWCQDENRHGDFFSAL----MKAQPQFLND----WKAKLWARFFCL-SVYVTMYLNDCQRTAFYEGIGLDTKEF 322 (374)
Q Consensus 252 IFk~FE~WCqDEnRHGDfFaal----mraqP~ll~g----~~~kLW~RFFLL-sVfaTMyl~D~~R~~FY~alGLD~~ey 322 (374)
+-+-++-=..||..|+.|+..| ....|++++. +...+...-.=+ .-|+...+. -+-+||++.+.
T Consensus 237 ~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~p~~~~~~~~~~v~~l~~eav~~E~~~~~~~~~-------~~i~Gl~~~~~ 309 (369)
T PRK07209 237 IAEQYQYILRDESMHLNFGIDLINQIKLENPHLWTAEFQAEIRELIKEAVELEYRYARDTMP-------RGVLGLNASMF 309 (369)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHHHHcC-------CCCCCcCHHHH
Confidence 3333334457999999998554 4467776553 222222221111 112222221 13789999998
Q ss_pred hHHHHHHhhHHHHH
Q 017291 323 DMHVIIEVSLWLSL 336 (374)
Q Consensus 323 D~~Vi~~TN~ta~r 336 (374)
...|=-..|.....
T Consensus 310 ~~Yi~y~AnrrL~~ 323 (369)
T PRK07209 310 KDYLRFIANRRLQQ 323 (369)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888776554
No 44
>PLN02492 ribonucleoside-diphosphate reductase
Probab=73.35 E-value=4 Score=39.35 Aligned_cols=83 Identities=13% Similarity=0.096 Sum_probs=53.3
Q ss_pred HHhhcCChHHHHHHHHHHHhhhhccc-cchhhHHHHhhhhcccCccHHHHhhccccchhhhhhh---hhhhhcc------
Q 017291 126 EAADKMQGPLRQIFVEFLERSCTAEF-SGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGF---LNKGLSD------ 195 (374)
Q Consensus 126 ~~~d~l~~e~R~~FidFLerScTaEF-SGflLYKEl~rrlk~~NP~lae~F~lMaRDEARHAGF---LNkal~D------ 195 (374)
++|..|+++.|..+..-|--=..+|- -|.-+...+...+ ++|+++..+..++--|+.|+-- |..++..
T Consensus 45 ~dw~~Lt~~Er~~~~~il~~~~~~D~~v~~~~~~~~~~~~--~~~E~~~~~~~q~~~E~iH~~sYs~i~~tl~~d~~~~~ 122 (324)
T PLN02492 45 KDWEKLTDDERHFISHVLAFFAASDGIVLENLAARFMKEV--QVPEARAFYGFQIAIENIHSEMYSLLLDTYIKDPKEKD 122 (324)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 46888999999877654433222222 2333445666666 6899999999999999999854 4555421
Q ss_pred --cccccccccccccCc
Q 017291 196 --FNYALDLGFLTKARK 210 (374)
Q Consensus 196 --f~l~lDLgfLtk~kk 210 (374)
|+.-.++..|.|+-.
T Consensus 123 ~~f~~~~~~p~l~~K~~ 139 (324)
T PLN02492 123 RLFNAIETIPCVAKKAD 139 (324)
T ss_pred HHHHHHHhCHHHHHHHH
Confidence 344455666665533
No 45
>PRK13967 nrdF1 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=72.71 E-value=1.9 Score=41.84 Aligned_cols=44 Identities=30% Similarity=0.392 Sum_probs=32.7
Q ss_pred ccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhh-hhhccc
Q 017291 151 FSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLN-KGLSDF 196 (374)
Q Consensus 151 FSGflLYKEl~rrlk~~NP~lae~F~lMaRDEARHAGFLN-kal~Df 196 (374)
+|||-..-=+.+|- +=|-++++..+.+|||+.|.-|.= +..+.+
T Consensus 166 ysgF~~~~~l~~~g--~m~g~~~~i~~I~RDE~~H~~~~~~~~~~~~ 210 (322)
T PRK13967 166 YSGFYLPMYWSSRG--KLTNTADLIRLIIRDEAVHGYYIGYKCQRGL 210 (322)
T ss_pred HHHHHHHHHHhhCC--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57776666666644 789999999999999999987543 343443
No 46
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=71.64 E-value=1.6 Score=37.24 Aligned_cols=46 Identities=22% Similarity=0.179 Sum_probs=39.4
Q ss_pred cccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhccccccc
Q 017291 150 EFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYAL 200 (374)
Q Consensus 150 EFSGflLYKEl~rrlk~~NP~lae~F~lMaRDEARHAGFLNkal~Df~l~l 200 (374)
|--|.=.|..+..+.+ ..++|..++++|.+|...|.+-+...|+..
T Consensus 12 Ek~a~~~Y~~~~~k~~-----~~~~F~~la~~E~~H~~~l~~L~~~~~~~~ 57 (135)
T cd01048 12 EKLARDVYLALYEKFG-----GLRPFSNIAESEQRHMDALKTLLERYGLPD 57 (135)
T ss_pred HHHHHHHHHHHHHHhc-----CcchHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4456667888888873 688999999999999999999999999875
No 47
>PF13668 Ferritin_2: Ferritin-like domain
Probab=71.23 E-value=4.1 Score=33.63 Aligned_cols=116 Identities=20% Similarity=0.333 Sum_probs=81.9
Q ss_pred hhhccccchhhHHHHhhhh------cccCccHHHHhhccccchhhhhhhhhhhhcccccccccccccccCcccccCcee-
Q 017291 146 SCTAEFSGFLLYKELGRRL------KKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKF- 218 (374)
Q Consensus 146 ScTaEFSGflLYKEl~rrl------k~~NP~lae~F~lMaRDEARHAGFLNkal~Df~l~lDLgfLtk~kkYTfF~Pkf- 218 (374)
-.+.|.-+.=.|+....+. ...+|.+.++|.-|+.+|..|+-+|.++++ |-.. .....|.|.-+.|
T Consensus 9 Al~lE~l~~~fY~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~E~~H~~~l~~~l~--g~~~-----~~~~~~~~~~~~~~ 81 (137)
T PF13668_consen 9 ALNLEYLEADFYQQAAEGFTLQDNKAALDPEVRDLFQEIADQEQGHVDFLQAALE--GGRP-----VPPPAYDFPFDPFT 81 (137)
T ss_pred HHHHHHHHHHHHHHHHhcCChhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCC-----CCCCccccccCCCC
Confidence 3455666666777777654 346899999999999999999999999996 2111 1344555522222
Q ss_pred ----eeeehhcccccchhhhHHHHhHhhhCCCCcccchhhhhhhhhcccccchhHHHHHH
Q 017291 219 ----IFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALM 274 (374)
Q Consensus 219 ----IfYAtYLSEKIGYwRYItIyRHLe~~Pe~rf~PIFk~FE~WCqDEnRHGDfFaalm 274 (374)
+.=+-+.-|+.|.-=|..+-.+++ +|+ +-+-+..=...|.||--.+..++
T Consensus 82 ~~~~~L~~A~~~E~~~~~~Y~g~~~~~~-~~~-----~~~~~~~i~~~Ea~H~~~ir~ll 135 (137)
T PF13668_consen 82 DDASFLRLAYTLEDVGVSAYKGAAPQIE-DPE-----LKALAASIAGVEARHAAWIRNLL 135 (137)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHH-----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 223445669999999999999887 555 34556677778889988877665
No 48
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=70.22 E-value=1.8 Score=39.59 Aligned_cols=111 Identities=23% Similarity=0.284 Sum_probs=76.5
Q ss_pred HHHHHhhhhccccc---hhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhccccccccccccccc--------
Q 017291 140 VEFLERSCTAEFSG---FLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKA-------- 208 (374)
Q Consensus 140 idFLerScTaEFSG---flLYKEl~rrlk~~NP~lae~F~lMaRDEARHAGFLNkal~Df~l~lDLgfLtk~-------- 208 (374)
.++|+.--+.|..- .+.|.++.++- --|.|+++|.-.|.+|+.||.=.=+.|++.+ +=+|-+.++
T Consensus 6 ~~~L~~aF~GEs~a~~rY~~~A~~A~~e--G~~~va~lfr~iA~~E~~HA~~~~~~l~~~~--~~~~~~~eNl~~aieGE 81 (166)
T COG1592 6 EENLRKAFAGESMAVMRYLIFAKVAEEE--GYPEIARLFRAIAEAEAVHAKNHLKLLGKLL--LVLGDTRENLEEAIEGE 81 (166)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHhcccc--cccccHHHHHHHHHccc
Confidence 34454444444333 56666776655 5899999999999999999998888888755 222222222
Q ss_pred -CcccccCceeeeeehhcccccchhhhHHHHhHhhhCCCCcccchhhhhhhhhcccccchhHHHHHHhh
Q 017291 209 -RKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKA 276 (374)
Q Consensus 209 -kkYTfF~PkfIfYAtYLSEKIGYwRYItIyRHLe~~Pe~rf~PIFk~FE~WCqDEnRHGDfFaalmra 276 (374)
-.++-..|.|.=+|-... +-.+=.+|+.=+-||.+|.+-|..+|..
T Consensus 82 ~~e~~emyp~~ae~A~~~g----------------------~~~~a~~f~~~~~~Ek~H~~~~~~~Le~ 128 (166)
T COG1592 82 TYEITEMYPVFAEVAEEEG----------------------FKEAARSFRAAAKAEKRHAEMFRGLLER 128 (166)
T ss_pred hHHHHHhChHHHHHHHHcC----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 235566677665554444 4466678888899999999999988865
No 49
>PRK13965 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=69.09 E-value=2.7 Score=41.09 Aligned_cols=51 Identities=24% Similarity=0.318 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhhhhccccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhh
Q 017291 135 LRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGF 188 (374)
Q Consensus 135 ~R~~FidFLerScTaEFSGflLYKEl~rrlk~~NP~lae~F~lMaRDEARHAGF 188 (374)
.++.....+..++-- +|||...--|+||. +=|-+++++.+.+|||+.|.-|
T Consensus 164 ~~~~va~~~lEGi~F-ysgFa~~~~L~~~g--kM~g~~~~i~~I~RDE~lH~~~ 214 (335)
T PRK13965 164 LKSKVAAAMMPGFLL-YGGFYLPFYLSARG--KLPNTSDIIRLILRDKVIHNYY 214 (335)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHhhcC--CCccHHHHHHHHHHhHHHHHHH
Confidence 344444444333332 47776666688865 7899999999999999999875
No 50
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=68.24 E-value=17 Score=36.42 Aligned_cols=199 Identities=15% Similarity=0.164 Sum_probs=102.6
Q ss_pred HHhh--cCChHHHHHHHHHHHhhhhccc-cchhhHHHHhhhhcccCccHHHHhhccccchhhhhh---hhhhhh----cc
Q 017291 126 EAAD--KMQGPLRQIFVEFLERSCTAEF-SGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAG---FLNKGL----SD 195 (374)
Q Consensus 126 ~~~d--~l~~e~R~~FidFLerScTaEF-SGflLYKEl~rrlk~~NP~lae~F~lMaRDEARHAG---FLNkal----~D 195 (374)
++|. +|+++.|..+..-|---..++- -|-.+...+.+.+ ++|.++-.++.++--|+.|+- .|+.++ ..
T Consensus 132 ~dw~~~~Lt~~Er~~~~~il~~~~~lD~~v~~~~~~~~~~~~--~~pE~~~~~~~q~~~E~iHsesYs~il~tl~~~~~~ 209 (410)
T PRK12759 132 TDWKNGKITKVEKEYITNILRLFTQSDVAVGQNYYDQFIPLF--KNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE 209 (410)
T ss_pred HHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 5784 7999999877654433222222 2333444566666 579999999999999999995 455554 12
Q ss_pred cccccccccccccCccc--ccCc-e------eeeeehhcccccchhhhHHHHhHhhhCCCCcccchhhhhhhhhcccccc
Q 017291 196 FNYALDLGFLTKARKYT--FFKP-K------FIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRH 266 (374)
Q Consensus 196 f~l~lDLgfLtk~kkYT--fF~P-k------fIfYAtYLSEKIGYwRYItIyRHLe~~Pe~rf~PIFk~FE~WCqDEnRH 266 (374)
++.-++...+.+.-.|- ..++ + .+ +.++-|-|=.---.++.-.|.++. ..-=+=+-.+-=+.||.-|
T Consensus 210 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~lv--~~~~lEgi~Fys~Fa~~~~l~~~g--~m~g~~~~i~~I~RDE~lH 285 (410)
T PRK12759 210 YHAFLEYKAMTDKIDFMMDADPTTRRGLGLCLA--KTVFNEGVALFASFAMLLNFQRFG--KMKGMGKVVEWSIRDESMH 285 (410)
T ss_pred HHHHHhhHHHHHHHHHHHhcCcchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcC--CCeeHHHHHHHHHHHHHHH
Confidence 33334444444322221 0000 0 11 122234443333333334666652 2222223333346899999
Q ss_pred hhHHHHHHh----hCccchhhhhhHHHHH-HHHHHh-----hhheeeccccchhhHHhcCCChhhhhHHHHHHhhHHHHH
Q 017291 267 GDFFSALMK----AQPQFLNDWKAKLWAR-FFCLSV-----YVTMYLNDCQRTAFYEGIGLDTKEFDMHVIIEVSLWLSL 336 (374)
Q Consensus 267 GDfFaalmr----aqP~ll~g~~~kLW~R-FFLLsV-----faTMyl~D~~R~~FY~alGLD~~eyD~~Vi~~TN~ta~r 336 (374)
|+|+..|.+ -.|++.+. ..+=|++ .+-=+| |+..-+.+ . .-+||++.+....|=-.+|.....
T Consensus 286 ~~~~~~l~~~l~~e~p~~~~~-~~~~~v~~~~~eave~E~~~~~~~~~~---~---~i~Gl~~~~~~~Yiky~an~~L~~ 358 (410)
T PRK12759 286 VEGNAALFRIYCQENPYIVDN-EFKKEIYLMASKAVELEDRFIELAYEL---G---TIEGLKADEVKQYIRHITDRRLNQ 358 (410)
T ss_pred HHHHHHHHHHHHHhChhhcCh-HHHHHHHHHHHHHHHHHHHHHHHHcCC---C---CcCCCCHHHHHHHHHHHHHHHHHH
Confidence 999988865 34665332 1111221 111111 11111110 0 156888887777777777766554
Q ss_pred H
Q 017291 337 L 337 (374)
Q Consensus 337 ~ 337 (374)
+
T Consensus 359 L 359 (410)
T PRK12759 359 L 359 (410)
T ss_pred c
Confidence 3
No 51
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1
Probab=67.90 E-value=3.8 Score=40.26 Aligned_cols=52 Identities=21% Similarity=0.422 Sum_probs=35.8
Q ss_pred chhhhHHHHhHhhhCCCCcccchhhhhhhhhcccccchhHHHHHHh----hCccchhhh
Q 017291 230 GYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMK----AQPQFLNDW 284 (374)
Q Consensus 230 GYwRYItIyRHLe~~Pe~rf~PIFk~FE~WCqDEnRHGDfFaalmr----aqP~ll~g~ 284 (374)
+|-|+|.-+-.+... .=.|..+|...|=..|||||+....-+- .+|..+...
T Consensus 76 ~Y~~~L~~~f~~~~~---~~~~w~~w~~~WtaEE~rHg~aL~~YL~~sg~vdp~~le~~ 131 (297)
T cd01050 76 TYHSMLNRLFGLDDE---SPTAWARWVRRWTAEENRHGDLLNKYLYLTGRVDPRALERT 131 (297)
T ss_pred HHHHHHHHHcCcccc---cccHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 456666655444321 2246899999999999999999886653 466666654
No 52
>PTZ00211 ribonucleoside-diphosphate reductase small subunit; Provisional
Probab=62.88 E-value=5.9 Score=38.39 Aligned_cols=196 Identities=15% Similarity=0.109 Sum_probs=101.9
Q ss_pred HHhhcCChHHHHHHHHHHHhhhhccc-cchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhcc---------
Q 017291 126 EAADKMQGPLRQIFVEFLERSCTAEF-SGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSD--------- 195 (374)
Q Consensus 126 ~~~d~l~~e~R~~FidFLerScTaEF-SGflLYKEl~rrlk~~NP~lae~F~lMaRDEARHAGFLNkal~D--------- 195 (374)
++|.+|+++.|..+..-|---..+|- -|..+...+...+ ..|+++..+..++=-|+.|+---.-.+.-
T Consensus 56 ~dw~~Lt~~Er~~~~~~l~~~~~~D~~v~~~~~~~~~~~~--~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~~~~~~~ 133 (330)
T PTZ00211 56 KDWEKLNDGERHFIKHVLAFFAASDGIVLENLAQRFMREV--QVPEARCFYGFQIAMENIHSETYSLLIDTYITDEEEKD 133 (330)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 57889999999988765433222221 2333444555656 67999999999999999998644333332
Q ss_pred --cccccccccccccCcccc--c--Cce----eeeeehhcccccc-hhhhHHHHhHhhhCCCCcccchhhhhhhhhcccc
Q 017291 196 --FNYALDLGFLTKARKYTF--F--KPK----FIFYATYLSEKIG-YWRYITIYRHLKANPEFQCYPIFKYFENWCQDEN 264 (374)
Q Consensus 196 --f~l~lDLgfLtk~kkYTf--F--~Pk----fIfYAtYLSEKIG-YwRYItIyRHLe~~Pe~rf~PIFk~FE~WCqDEn 264 (374)
|+--.+...|.++-.|.- + .+. .| +-++-|.|= |.=|..+| .|.++ ...--+=+-++-=..||.
T Consensus 134 ~~f~~~~~~p~i~~K~~~~~~~~~~~~~~~~~lv--~~~~lEgi~F~sgF~~~~-~l~~~--g~m~g~~~~i~~I~RDE~ 208 (330)
T PTZ00211 134 RLFHAIETIPAIKKKAEWAAKWINSSNSFAERLV--AFAAVEGIFFSGSFCAIF-WLKKR--GLMPGLTFSNELISRDEG 208 (330)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHhcchHHHHHHH--HHHHhhhHHhhhhHHHHH-HHHhc--CCCcchHHHHHHHHhhHH
Confidence 333344555544433210 0 000 11 111233332 12222333 55442 233333333444468999
Q ss_pred cchhHHHHHHhh---CccchhhhhhHHHHHHHHHHhhh-heeeccccchhhHHhcCCChhhhhHHHHHHhhHHHHHH
Q 017291 265 RHGDFFSALMKA---QPQFLNDWKAKLWARFFCLSVYV-TMYLNDCQRTAFYEGIGLDTKEFDMHVIIEVSLWLSLL 337 (374)
Q Consensus 265 RHGDfFaalmra---qP~ll~g~~~kLW~RFFLLsVfa-TMyl~D~~R~~FY~alGLD~~eyD~~Vi~~TN~ta~r~ 337 (374)
.||.|...|.+. .|. ..+...+ +.-+|=. .=|..+.-. ++-+||+..+....|=-.+|....++
T Consensus 209 ~H~~f~~~l~~~l~~~~~--~~~i~~l----~~~ave~E~~~~~~~~~---~~~~Gl~~~~~~~yi~y~an~~l~~l 276 (330)
T PTZ00211 209 LHTDFACLLYSHLKNKLP--RERVQEI----IKEAVEIEREFICDALP---VDLIGMNSRLMAQYIEFVADRLLVAL 276 (330)
T ss_pred HHHHHHHHHHHHHhcCCC--HHHHHHH----HHHHHHHHHHHHHHHcC---CCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 999999766553 221 2333333 2112210 001111111 56788888877777777777766554
No 53
>cd07910 MiaE MiaE tRNA-modifying nonheme diiron monooxygenase, ferritin-like diiron-binding domain. MiaE is a nonheme diiron monooxygenase that catalyzes the posttranscriptional allylic hydroxylation of a modified nucleoside in tRNA called 2-methylthio-N-6-isopentenyl adenosine (ms2i6A). ms2i6A is found at position 37, next to the anticodon at the 3' position in almost all eukaryotic and bacterial tRNA's that read codons beginning with uridine. The miaE gene is absent in Escherichia coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species.
Probab=59.79 E-value=28 Score=32.61 Aligned_cols=112 Identities=16% Similarity=0.199 Sum_probs=73.6
Q ss_pred cccChHHHhhcccccccccccHHHHH---HHHHHHhhccCCCCcccChhH-HHHhhcCChHHHHHHHHHHHhhhhccccc
Q 017291 78 YTTDFDEMETLFNTEINKKLNQAEFE---ALLQEFKTDYNQTHFVRNKEF-KEAADKMQGPLRQIFVEFLERSCTAEFSG 153 (374)
Q Consensus 78 YTTDFd~m~~lf~~~id~~~~r~E~~---Aml~Efr~DyNr~HFvR~~eF-~~~~d~l~~e~R~~FidFLerScTaEFSG 153 (374)
|..+-+=+++| ....+||+. .+++-|++-.-.--=.+.+.+ .+...++....-..++|=|.=+-.=|--|
T Consensus 44 Y~~~~~Lv~~m------~~LarEEL~HFeqV~~im~~Rgi~l~~~~~~~Ya~~L~k~vR~~~p~~llD~Llv~alIEARS 117 (180)
T cd07910 44 YPEKPELVEAM------SDLAREELQHFEQVLKIMKKRGIPLGPDSKDPYASGLRKLVRKGEPERLLDRLLVAALIEARS 117 (180)
T ss_pred cCCcHhHHHHH------HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcccCChHHHHHHHHHHHHHHHHh
Confidence 55556666666 235788887 777777764432222233345 33334444445566788776555556677
Q ss_pred hhhHHHHhhhhcccCccHHHHhhccccchhhhhh-hhhhhhcccc
Q 017291 154 FLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAG-FLNKGLSDFN 197 (374)
Q Consensus 154 flLYKEl~rrlk~~NP~lae~F~lMaRDEARHAG-FLNkal~Df~ 197 (374)
|==|+=|+..+ ..+.|++.+.-+-+.||||-+ |+.-|-.-++
T Consensus 118 cERF~lLa~~l--~D~eL~~FY~~Ll~SEarHy~~yl~LA~~y~~ 160 (180)
T cd07910 118 CERFALLAPAL--PDPELKKFYRGLLESEARHYELFLDLARKYFD 160 (180)
T ss_pred HHHHHHHhccC--CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHcC
Confidence 77788888887 568999999999999999965 6666655544
No 54
>PTZ00183 centrin; Provisional
Probab=59.77 E-value=27 Score=28.07 Aligned_cols=87 Identities=16% Similarity=0.210 Sum_probs=49.4
Q ss_pred HHHHHHHHHh-hccCCCCcccChhHHHHhhcCChHHHHHHHHHHHhhhhccccchhhHHHHhhhhcc------cCccHHH
Q 017291 101 EFEALLQEFK-TDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKK------TNPVVAE 173 (374)
Q Consensus 101 E~~Aml~Efr-~DyNr~HFvR~~eF~~~~d~l~~e~R~~FidFLerScTaEFSGflLYKEl~rrlk~------~NP~lae 173 (374)
+.+++...|. -|.|+...+-.++|...+..+....-..-++=+-+.+-.+-.|.+-|.|...=+.. ....+.+
T Consensus 15 ~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~ 94 (158)
T PTZ00183 15 QKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILK 94 (158)
T ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHH
Confidence 3344444443 37777888888888766664321111223444444455667777777766442221 1246888
Q ss_pred Hhhccccchhhhhhhhh
Q 017291 174 IFSLMSRDEARHAGFLN 190 (374)
Q Consensus 174 ~F~lMaRDEARHAGFLN 190 (374)
+|..+..|. .|.|+
T Consensus 95 ~F~~~D~~~---~G~i~ 108 (158)
T PTZ00183 95 AFRLFDDDK---TGKIS 108 (158)
T ss_pred HHHHhCCCC---CCcCc
Confidence 899887764 55544
No 55
>PF11583 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_B 3CHT_A 3CHH_A 2JCD_B 3CHU_A.
Probab=59.31 E-value=6.7 Score=36.64 Aligned_cols=50 Identities=28% Similarity=0.363 Sum_probs=35.3
Q ss_pred hhhccccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhccc
Q 017291 146 SCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDF 196 (374)
Q Consensus 146 ScTaEFSGflLYKEl~rrlk~~NP~lae~F~lMaRDEARHAGFLNkal~Df 196 (374)
-|.+|-+-=-+.+++.+-= .-.|.+.+++..=.+|||||.+|--..|.+.
T Consensus 178 ~lv~Ee~i~~~~~~~~~D~-~iqP~~r~v~~iH~~DEaRHi~f~~~~l~~~ 227 (304)
T PF11583_consen 178 ALVAEEIIDAYQREIARDE-TIQPLVRQVMRIHVRDEARHIAFAREELRRV 227 (304)
T ss_dssp HHHHHHSBHHHHHHHHT-S-SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556655555556665521 1379999999999999999999988777653
No 56
>TIGR02156 PA_CoA_Oxy1 phenylacetate-CoA oxygenase, PaaG subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=58.22 E-value=6.1 Score=38.83 Aligned_cols=151 Identities=22% Similarity=0.300 Sum_probs=102.5
Q ss_pred hhcCChHHHHHHHHHHHhhhhccccchhhHHHHhhhhcccCccHHHHhhc--cccchhhhhhhhhhhhccccccc--cc-
Q 017291 128 ADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSL--MSRDEARHAGFLNKGLSDFNYAL--DL- 202 (374)
Q Consensus 128 ~d~l~~e~R~~FidFLerScTaEFSGflLYKEl~rrlk~~NP~lae~F~l--MaRDEARHAGFLNkal~Df~l~l--DL- 202 (374)
-|.||++-|+..+.+|.+---+|+-|-.-+.|--.|- |.|.|=..+ ++=||..||=.+-..+.++|.+- |+
T Consensus 14 ~d~mp~~yr~~L~r~l~~~AdsEli~a~r~~eW~~~A----P~LeediAl~niaqDelGHar~ly~~a~~LG~~r~ed~~ 89 (289)
T TIGR02156 14 KDWMPAAYRKTLIRQISQHAHSEIVGMLPEGNWITRA----PTLKRKLILMAKVQDEAGHGLYLYAAAETLGVSREELLD 89 (289)
T ss_pred cccCCHHHHHHHHHHHHHHhhHHHHhccccccHHHhC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHH
Confidence 3679999999999999999999999999999977767 888885554 57799999999999999998843 23
Q ss_pred ccccccCcccccCceeeeeehhcccccchhhhHHH-------Hh--HhhhCCCCcccchhhhhhhhhcccccc---h-hH
Q 017291 203 GFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITI-------YR--HLKANPEFQCYPIFKYFENWCQDENRH---G-DF 269 (374)
Q Consensus 203 gfLtk~kkYTfF~PkfIfYAtYLSEKIGYwRYItI-------yR--HLe~~Pe~rf~PIFk~FE~WCqDEnRH---G-Df 269 (374)
.++...++|.- |+ ---.|-|=+..+ |. .++.--.-.+-|+=.-...=|..|--| | +.
T Consensus 90 a~~r~~~~f~n-----l~-----e~P~~dwA~tivr~~l~D~~~~~~~~~L~~SSy~plA~ia~Ki~KEe~yH~rh~~~w 159 (289)
T TIGR02156 90 ALLTGKAKYSS-----IF-----NYPTLTWADIGVIGWLVDGAAIMNQTPLCRCSYGPYSRAMVRICKEESFHQRQGYEI 159 (289)
T ss_pred HHhcChHhhcc-----ch-----hCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37778777753 11 001222222111 00 123333445557777778888888755 4 33
Q ss_pred HHHHHhh---CccchhhhhhHHHHHH
Q 017291 270 FSALMKA---QPQFLNDWKAKLWARF 292 (374)
Q Consensus 270 Faalmra---qP~ll~g~~~kLW~RF 292 (374)
.-.|+.. +-+.+..-.+++|-..
T Consensus 160 l~rL~~GT~esr~r~Q~Ald~~Wp~~ 185 (289)
T TIGR02156 160 MLTLARGTQEQRQMAQDALNRWWWPS 185 (289)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 4445432 4455666788889753
No 57
>PRK13456 DNA protection protein DPS; Provisional
Probab=57.57 E-value=13 Score=34.78 Aligned_cols=143 Identities=20% Similarity=0.224 Sum_probs=112.1
Q ss_pred hHHHHHHHHHHHhhhhccccchhhHHHHhhhhccc-CccHHHHhhccccchhhhhhhhhhhhccccccccccccc----c
Q 017291 133 GPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKT-NPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLT----K 207 (374)
Q Consensus 133 ~e~R~~FidFLerScTaEFSGflLYKEl~rrlk~~-NP~lae~F~lMaRDEARHAGFLNkal~Df~l~lDLgfLt----k 207 (374)
+..++..|+-|.+....|+.-++-|.-.+.-++.- .+.|+|.+.--+=||-+||-.|-.-+.++|-..+...-. .
T Consensus 15 g~d~~~li~lLn~AlA~E~~a~~~Y~~~a~~~~G~~~e~V~e~le~a~~EEl~HA~~lAeRI~qLGG~P~~~p~~~~~ls 94 (186)
T PRK13456 15 GVDVDKLVELLVKNAAAEFTTYYYYTILRAHLIGLEGEGLKEIAEDARLEDRNHFEALVPRIYELGGKLPRDIREFHDIS 94 (186)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHhhhh
Confidence 44688899999999999999999999988888765 689998888866699999999999999999888766542 2
Q ss_pred cCcccccCcee-----eeeehhcccccchhhhHHHHhHhhhCCCCcccchhhhhhhhhcccccchhHHHHHHhhCcc
Q 017291 208 ARKYTFFKPKF-----IFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQ 279 (374)
Q Consensus 208 ~kkYTfF~Pkf-----IfYAtYLSEKIGYwRYItIyRHLe~~Pe~rf~PIFk~FE~WCqDEnRHGDfFaalmraqP~ 279 (374)
++.|...+... |+=..--.|++-=.+|=-|.+..+-. +-.=+ +-.+.=-+||-.|-+-|..||+..|.
T Consensus 95 ~~~~~~~p~d~tdv~~mL~~~L~AEr~AI~~Y~eii~~~~~k-Dp~T~---~l~~~IL~dE~eH~~dl~~lL~~~~~ 167 (186)
T PRK13456 95 ACPDAYLPENPTDPKEILKVLLEAERCAIRTYTEICDMTAGK-DPRTY---DLALAILQEEIEHEAWFSELLGGGPS 167 (186)
T ss_pred cCccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CccHH---HHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 57887775543 33444557888777888887777733 33332 33466789999999999999999884
No 58
>PRK09101 nrdB ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=57.53 E-value=10 Score=37.66 Aligned_cols=53 Identities=25% Similarity=0.195 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhhhhcc----ccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhh
Q 017291 135 LRQIFVEFLERSCTAE----FSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFL 189 (374)
Q Consensus 135 ~R~~FidFLerScTaE----FSGflLYKEl~rrlk~~NP~lae~F~lMaRDEARHAGFL 189 (374)
.++.++.-|+.|..-| +|||...=-++||. +=|-++++..+.+|||+-|..|.
T Consensus 190 ~~~~l~~~lva~~~lEgi~FyssFa~~~~l~~~g--~m~g~~~~i~~I~RDE~lH~~~~ 246 (376)
T PRK09101 190 LKKKLYLCLMSVNALEAIRFYVSFACSFAFAERE--LMEGNAKIIRLIARDEALHLTGT 246 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC--CCccHHHHHHHHHHHHHHHHHHH
Confidence 3555655555555444 67777666788764 78999999999999999998776
No 59
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=52.57 E-value=5.9 Score=32.67 Aligned_cols=23 Identities=22% Similarity=0.576 Sum_probs=19.6
Q ss_pred cchhhhHHHHhHhhhCCCCcccc
Q 017291 229 IGYWRYITIYRHLKANPEFQCYP 251 (374)
Q Consensus 229 IGYwRYItIyRHLe~~Pe~rf~P 251 (374)
|-|.||++++-.|.+|||++=.+
T Consensus 59 vl~~R~~~L~~ki~~Hpdy~~~~ 81 (115)
T PF08969_consen 59 VLYMRYLTLVEKIPKHPDYKKDK 81 (115)
T ss_dssp HHHHHHHHHHCCHCCSCCCCCTH
T ss_pred HHHHHHHHHHHHhhcCccccccc
Confidence 45799999999999999987543
No 60
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=52.33 E-value=17 Score=31.11 Aligned_cols=136 Identities=18% Similarity=0.080 Sum_probs=92.4
Q ss_pred HHHHHHHHHhhhhccccchhhHHHHhhhhccc-CccHHHHhhccccchhhhhhhhhhhhcccccccccccccccCccccc
Q 017291 136 RQIFVEFLERSCTAEFSGFLLYKELGRRLKKT-NPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFF 214 (374)
Q Consensus 136 R~~FidFLerScTaEFSGflLYKEl~rrlk~~-NP~lae~F~lMaRDEARHAGFLNkal~Df~l~lDLgfLtk~kkYTfF 214 (374)
+...++.|-.-...|++-...|.=.+.=.+.. -+.++..|..-+-||-.||+-|-+-+.+.|-..+++-+..-+. . .
T Consensus 4 ~~~~~~~LN~~l~~E~~a~~~Y~~~~~~~~~~~~~g~a~~~~~~a~EE~~Ha~~laeri~~lGg~p~~~~i~~~~~-~-~ 81 (157)
T TIGR00754 4 DPDVIQHLNKQLTNELTAINQYFLHARMQKNWGLKELADHEYHESIDEMKHADEIIERILFLEGLPNLQDLGKLRI-G-E 81 (157)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCcCCCCCC-C-C
Confidence 45678899999999999988888776655332 4677778888899999999999999999999999875543221 1 2
Q ss_pred CceeeeeehhcccccchhhhHHHHhHhhhCCCCcccchhhhhhhhhcccccchhHHHHHHhh
Q 017291 215 KPKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKA 276 (374)
Q Consensus 215 ~PkfIfYAtYLSEKIGYwRYItIyRHLe~~Pe~rf~PIFk~FE~WCqDEnRHGDfFaalmra 276 (374)
.+.=++=..+=.|+-.-.+|=-+.+--++..+..-. .+|+...+||-+|-+++.+.+.-
T Consensus 82 ~~~e~l~~~l~~E~~~~~~~~e~i~~A~~~~D~~t~---~ll~~~i~eee~h~~~l~~~l~~ 140 (157)
T TIGR00754 82 TVREMLEADLALELDVLNRLKEAIAYAEEVRDYVSR---DLLEEILEDEEEHIDWLETQLEL 140 (157)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 233223333333443333333333333445555444 44566689999999999988874
No 61
>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: - Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: - Bacterial fatty acid desaturases. - Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. - Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 2. ; GO: 0045300 acyl-[acyl-carrier-protein] desaturase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 1OQ7_B 1AFR_A 2XZ0_B 1OQB_A 2J2F_E 1OQ4_B 1OQ9_A 2XZ1_A 1ZA0_A.
Probab=51.16 E-value=5.9 Score=39.67 Aligned_cols=44 Identities=23% Similarity=0.442 Sum_probs=28.0
Q ss_pred hhhhHHHHhHhhhCCCCcccchhhhhhhhhcccccchhHHHHHH
Q 017291 231 YWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALM 274 (374)
Q Consensus 231 YwRYItIyRHLe~~Pe~rf~PIFk~FE~WCqDEnRHGDfFaalm 274 (374)
|-|.|+-+=-++..-.....|..+|...|--.|||||+...--|
T Consensus 79 Y~~~l~~~~~~~~~~ga~~~~W~~wv~~WTAEEnRHg~~L~~YL 122 (330)
T PF03405_consen 79 YHRELATLFGVRDEDGASDSPWGRWVGRWTAEENRHGDALRDYL 122 (330)
T ss_dssp HHHHHTTSTTT--SSSS--SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCccccCCCCCCcHHHHcccccccccccHHHHHHHH
Confidence 34444433333222233477999999999999999999887554
No 62
>PF05138 PaaA_PaaC: Phenylacetic acid catabolic protein; InterPro: IPR007814 This family includes proteins such as PaaA and PaaC that are part of a catabolic pathway of phenylacetic acid []. These proteins may form part of a dioxygenase complex.; PDB: 3PWQ_K 3PVT_B 1OTK_B 3PW1_B 3PW8_B 3PVR_B 3PVY_B 3Q1G_A 3PF7_B 3PM5_C ....
Probab=50.11 E-value=13 Score=35.53 Aligned_cols=154 Identities=20% Similarity=0.252 Sum_probs=98.9
Q ss_pred HhhcCChHHHHHHHHHHHhhhhccccchhhHHHHhhhhcccCccHHHHhhc--cccchhhhhhhhhhhhccc-ccc---c
Q 017291 127 AADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSL--MSRDEARHAGFLNKGLSDF-NYA---L 200 (374)
Q Consensus 127 ~~d~l~~e~R~~FidFLerScTaEFSGflLYKEl~rrlk~~NP~lae~F~l--MaRDEARHAGFLNkal~Df-~l~---l 200 (374)
+.+.||++.|+..+++|.+-=-+|+.|---+.|.--+- |.|.|-..+ |+=||-+||-.+...+.++ |-+ =
T Consensus 6 ~~~~~~~~~~~~L~~~l~~laD~elil~~r~~ew~~~A----P~LeediAl~~ia~DelGHAr~ly~ll~el~g~G~~~d 81 (263)
T PF05138_consen 6 DPDEMPEEYREALIRYLLRLADDELILGQRLSEWCGHA----PSLEEDIALANIAQDELGHARLLYRLLEELEGEGRDED 81 (263)
T ss_dssp TTSS--HHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGS----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCCHHHH
T ss_pred cchhhhhhhHHHHHHHHHHHhChHHHhhhHHhHHHhhC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChh
Confidence 45789999999999999999999999888888876665 999887664 5779999999999999999 433 3
Q ss_pred ccccccccCcccccCceeeeeehhcccccchhhhHHH---------HhHhhhCCCCcccchhhhhhhhhcccccchhHHH
Q 017291 201 DLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITI---------YRHLKANPEFQCYPIFKYFENWCQDENRHGDFFS 271 (374)
Q Consensus 201 DLgfLtk~kkYTfF~PkfIfYAtYLSEKIGYwRYItI---------yRHLe~~Pe~rf~PIFk~FE~WCqDEnRHGDfFa 271 (374)
+|.++...++|.. +..+--.+|-|=...+ +-.|+.--+-.+-|+=.-...=|.+|.-|=.+-.
T Consensus 82 ~la~~R~~~~~rn--------~~l~e~p~~dwa~~v~r~~l~d~~~~~~l~~l~~ssy~pla~~a~k~~kEe~yH~~h~~ 153 (263)
T PF05138_consen 82 DLAFLRDAREFRN--------LLLFEQPNGDWADTVARQFLFDRAGKVLLEALADSSYEPLAAIAAKILKEEAYHLRHGE 153 (263)
T ss_dssp HHHHHHHTTCS-S--------SGGGGS---SHHHHHHHHHHHHHHHHHHHHHHTT-SBHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcccchhhh--------hhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666632 1222223333322111 1133444455566777777777777776655544
Q ss_pred HHHhh----Cc---cchhhhhhHHHHHH
Q 017291 272 ALMKA----QP---QFLNDWKAKLWARF 292 (374)
Q Consensus 272 almra----qP---~ll~g~~~kLW~RF 292 (374)
-.|+. .+ +.+..-.+++|-+.
T Consensus 154 ~w~~rL~~gt~es~~r~q~Al~~~wp~~ 181 (263)
T PF05138_consen 154 DWLRRLGDGTEESRERMQAALDRLWPYT 181 (263)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 44433 22 33444568888764
No 63
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=49.40 E-value=6 Score=30.91 Aligned_cols=24 Identities=21% Similarity=0.743 Sum_probs=20.4
Q ss_pred hhhheeeccccch-hhHHhcCCChh
Q 017291 297 VYVTMYLNDCQRT-AFYEGIGLDTK 320 (374)
Q Consensus 297 VfaTMyl~D~~R~-~FY~alGLD~~ 320 (374)
+|++.+++|.+|+ +||+.||+...
T Consensus 2 ~~v~l~V~Dl~~s~~FY~~lGf~~~ 26 (124)
T cd09012 2 IFINLPVKDLEKSTAFYTALGFEFN 26 (124)
T ss_pred EEEEeecCCHHHHHHHHHHCCCEEc
Confidence 5789999999975 79999999754
No 64
>PF06175 MiaE: tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE); InterPro: IPR010386 This family consists of several bacterial tRNA-(MSIO[6]A)-hydroxylase (MiaE) proteins. The modified nucleoside 2-methylthio-N-6-isopentenyl adenosine (ms2i6A) is present at position 37 (3' of the anticodon) of tRNAs that read codons beginning with U except tRNA(I,V Ser) in Escherichia coli. Salmonella typhimurium 2-methylthio-cis-ribozeatin (ms2io6A) is found in tRNA, probably in the corresponding species that have ms2i6A in E. coli. The miaE gene is absent in E. coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species [].; PDB: 2ITB_B.
Probab=49.29 E-value=26 Score=34.17 Aligned_cols=119 Identities=18% Similarity=0.203 Sum_probs=67.4
Q ss_pred cCCCCccccChHHHhhcccccccccccHHHH---HHHHHHHhhccCCCCcccChhHH-HHhhcCChHHHHHHHHHHHhhh
Q 017291 72 LLTPRFYTTDFDEMETLFNTEINKKLNQAEF---EALLQEFKTDYNQTHFVRNKEFK-EAADKMQGPLRQIFVEFLERSC 147 (374)
Q Consensus 72 lLTPRFYTTDFd~m~~lf~~~id~~~~r~E~---~Aml~Efr~DyNr~HFvR~~eF~-~~~d~l~~e~R~~FidFLerSc 147 (374)
-+.|+..-.+-.++-.- =+...+||| +.+++.|++-.-.---.+.+.+. +...++....-..++|=|.=+-
T Consensus 89 ~~~~~~~~P~~~eLv~~-----Ms~LarEEL~HFeqVl~im~~RGi~l~~~~~d~Ya~~L~k~vR~~ep~~lvDrLLv~A 163 (240)
T PF06175_consen 89 SLQPKSHYPEKEELVDK-----MSRLAREELHHFEQVLEIMKKRGIPLGPDRKDRYAKGLRKHVRKGEPERLVDRLLVGA 163 (240)
T ss_dssp -----------HHHHHH-----HHHHHHHHHHHHHHHHHHHHHTT---------SHHHHHHTTS-SSTTHHHHHHHHHHH
T ss_pred cccccccccccHHHHHH-----HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcCHHHHHHHHhccCCchHhHHHHHHHHH
Confidence 35566666665554431 123467775 56788887766555556666773 3444454444467888776555
Q ss_pred hccccchhhHHHHhhhhcccCccHHHHhhccccchhhhhh-hhhhhhccccc
Q 017291 148 TAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAG-FLNKGLSDFNY 198 (374)
Q Consensus 148 TaEFSGflLYKEl~rrlk~~NP~lae~F~lMaRDEARHAG-FLNkal~Df~l 198 (374)
.=|--||==|+=|+-.+ .|.|++.+.-+-+.||||-+ ||+-|-.-++-
T Consensus 164 lIEARSCERF~lLa~~l---D~eL~~FY~~Ll~SEArHy~~yl~LA~~y~~~ 212 (240)
T PF06175_consen 164 LIEARSCERFALLAEHL---DEELAKFYRSLLRSEARHYQDYLKLARQYFDE 212 (240)
T ss_dssp HHHHHHHHHHHHHGGGS----HHHHHHHHHHHHHHHHHHHHHHHHHCCCS-H
T ss_pred hHhhhhHHHHHHHHHhh---CHHHHHHHHHHHHHHhhHHHHHHHHHHHHCCc
Confidence 56777777888899888 69999999999999999964 77777665553
No 65
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=47.40 E-value=18 Score=29.07 Aligned_cols=58 Identities=16% Similarity=0.269 Sum_probs=46.7
Q ss_pred HHHHhhhhccccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhccccccc
Q 017291 141 EFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYAL 200 (374)
Q Consensus 141 dFLerScTaEFSGflLYKEl~rrlk~~NP~lae~F~lMaRDEARHAGFLNkal~Df~l~l 200 (374)
+=|..=+..+..|.--|+....++ +||.|+.+|.-|+.+-.+|+.=|..-+.++|-..
T Consensus 4 ~~Ln~Ll~~~~d~~~~Y~~a~~~~--~~~~lk~~f~~~~~~~~~~~~~L~~~i~~~Gg~p 61 (111)
T PF09537_consen 4 EALNDLLKGLHDGIEGYEKAAEKA--EDPELKSLFQEFAQERQQHAEELQAEIQELGGEP 61 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----SHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 334444567778889999999999 5899999999999999999999999999998654
No 66
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=44.81 E-value=16 Score=32.43 Aligned_cols=55 Identities=25% Similarity=0.286 Sum_probs=46.7
Q ss_pred HHHHHhhhhccccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhccc
Q 017291 140 VEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDF 196 (374)
Q Consensus 140 idFLerScTaEFSGflLYKEl~rrlk~~NP~lae~F~lMaRDEARHAGFLNkal~Df 196 (374)
++=|..-..||-.+...|+++.+-+ ++|.+.++...+..||-.|.-=+-++|...
T Consensus 101 ~~~L~~ni~aE~~Ai~~Y~~l~~~~--~Dp~v~~~l~~I~~rE~~H~~~f~~~l~~~ 155 (156)
T cd01051 101 VADLRSNIAAESRARLTYERLYEMT--DDPGVKDTLSFLLVREIVHQNAFGKALESL 155 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445567789999999999999988 589999999999999999998877777643
No 67
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=44.59 E-value=20 Score=31.76 Aligned_cols=115 Identities=11% Similarity=0.140 Sum_probs=75.4
Q ss_pred hhhhccccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhcccccccccccccccCcccccCceeeeeehh
Q 017291 145 RSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATY 224 (374)
Q Consensus 145 rScTaEFSGflLYKEl~rrlk~~NP~lae~F~lMaRDEARHAGFLNkal~Df~l~lDLgfLtk~kkYTfF~PkfIfYAtY 224 (374)
-++.+|.|-.+-|-==+-.++ .+|.+++++.-.|.+|-+|++.|-..+..+|- +..-..+.+.+|-|..-
T Consensus 30 gG~~gEl~ai~qYl~q~~~~~-~~~~~~d~l~~ia~eEm~H~e~la~~I~~Lg~---------~~~g~pw~~~yv~~~~d 99 (156)
T cd01051 30 GGAFGELSAAMQYLFQSFNFR-EDPKYRDLLLDIGTEELSHLEMVATLIAMLLK---------DSQGVPWTAAYIQSSGN 99 (156)
T ss_pred CCccHHHHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---------CCCCCcCCCcccCCCCC
Confidence 345556665555543333342 68999999999999999999999998887775 22223446666666443
Q ss_pred ---------cccccchhhhHHHHhHhhhCCCCcccchhhhhhhhhcccccchhHHHHHHh
Q 017291 225 ---------LSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMK 275 (374)
Q Consensus 225 ---------LSEKIGYwRYItIyRHLe~~Pe~rf~PIFk~FE~WCqDEnRHGDfFaalmr 275 (374)
=+|+-+-..|--+++-.+ +--..-++++ --+||-.|=+.|..++.
T Consensus 100 ~~~~L~~ni~aE~~Ai~~Y~~l~~~~~---Dp~v~~~l~~---I~~rE~~H~~~f~~~l~ 153 (156)
T cd01051 100 LVADLRSNIAAESRARLTYERLYEMTD---DPGVKDTLSF---LLVREIVHQNAFGKALE 153 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC---CHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 345555556655555543 3333444444 45899999999988776
No 68
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=41.70 E-value=46 Score=30.25 Aligned_cols=55 Identities=27% Similarity=0.309 Sum_probs=48.0
Q ss_pred HHHHHHHHhhhhccccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhh
Q 017291 137 QIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGL 193 (374)
Q Consensus 137 ~~FidFLerScTaEFSGflLYKEl~rrlk~~NP~lae~F~lMaRDEARHAGFLNkal 193 (374)
.-.++=|..+.-+|.-..-.|.++...+ .|+.++.+|...+.||-.|+-++..-.
T Consensus 112 ~~~~~~I~~a~~~E~~t~~~Y~~~~~~~--~~~~~~~~~~~~a~~E~~H~~~l~~~~ 166 (176)
T COG1633 112 VSYLEAIEAAMEAEKDTIEFYEELLDEL--VNEEAKKLFKTIADDEKGHASGLLSLY 166 (176)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777778888999999999999999 899999999999999999998886543
No 69
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=40.18 E-value=41 Score=35.60 Aligned_cols=142 Identities=20% Similarity=0.262 Sum_probs=99.4
Q ss_pred HHHHHHHHHHhhccCCCCcccChhHHHHhhcCChH-HHHHHHHHHHhhhhccccchhhHHHHhhhhcccCccHHHHhhcc
Q 017291 100 AEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGP-LRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLM 178 (374)
Q Consensus 100 ~E~~Aml~Efr~DyNr~HFvR~~eF~~~~d~l~~e-~R~~FidFLerScTaEFSGflLYKEl~rrlk~~NP~lae~F~lM 178 (374)
-+|.-+.+||-.|.| -++--.+..+.+..++-+ .-....-=|.+-|.++-.|-|=|.|-+|-+.++--.|.++|.-+
T Consensus 14 ~r~~~lf~~lD~~~~--g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E~~l~~~F~~i 91 (463)
T KOG0036|consen 14 IRIRCLFKELDSKND--GQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKELELYRIFQSI 91 (463)
T ss_pred HHHHHHHHHhccCCC--CceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhHHHHHHHHhhh
Confidence 467778888866554 445555555444444333 34445566778999999999999999999988888999999998
Q ss_pred ccchhhhhhh--hhhhhcccccccccccccccCcccccCceeeeeehhcccccchhhhHHH-----HhHhhhCCCCcccc
Q 017291 179 SRDEARHAGF--LNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITI-----YRHLKANPEFQCYP 251 (374)
Q Consensus 179 aRDEARHAGF--LNkal~Df~l~lDLgfLtk~kkYTfF~PkfIfYAtYLSEKIGYwRYItI-----yRHLe~~Pe~rf~P 251 (374)
-++---|-+- |+.+|+|.|+.+|...+.| ||. + -+|=|+| +| --|+--||+--++-
T Consensus 92 D~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k-----~~e--~-------~d~~g~~---~I~~~e~rd~~ll~p~s~i~d 154 (463)
T KOG0036|consen 92 DLEHDGKIDPNEIWRYLKDLGIQLSDEKAAK-----FFE--H-------MDKDGKA---TIDLEEWRDHLLLYPESDLED 154 (463)
T ss_pred ccccCCccCHHHHHHHHHHhCCccCHHHHHH-----HHH--H-------hccCCCe---eeccHHHHhhhhcCChhHHHH
Confidence 8863333322 4899999999998877666 331 1 1233332 12 14777889888998
Q ss_pred hhhhhhhhh
Q 017291 252 IFKYFENWC 260 (374)
Q Consensus 252 IFk~FE~WC 260 (374)
|..+.+.-|
T Consensus 155 i~~~W~h~~ 163 (463)
T KOG0036|consen 155 IYDFWRHVL 163 (463)
T ss_pred HHHhhhhhe
Confidence 988888888
No 70
>PRK13778 paaA phenylacetate-CoA oxygenase subunit PaaA; Provisional
Probab=40.05 E-value=25 Score=35.22 Aligned_cols=155 Identities=19% Similarity=0.243 Sum_probs=101.3
Q ss_pred HhhcCChHHHHHHHHHHHhhhhccccchhhHHHHhhhhcccCccHHHHhh--ccccchhhhhhhhhhhhccccccc--cc
Q 017291 127 AADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFS--LMSRDEARHAGFLNKGLSDFNYAL--DL 202 (374)
Q Consensus 127 ~~d~l~~e~R~~FidFLerScTaEFSGflLYKEl~rrlk~~NP~lae~F~--lMaRDEARHAGFLNkal~Df~l~l--DL 202 (374)
.-|.||++-|+..+.+|.+---+|+-|-.-..|--.|- |.|.|=.. -++=||..||=.+-..+.++|.+- |+
T Consensus 31 ~~d~mp~~yr~~L~~~l~~laDseLi~a~r~~eWi~~A----P~LeediAl~niaqDelGHa~~ly~~aeeLG~~r~e~~ 106 (314)
T PRK13778 31 PKDWMPDAYRKTLIRQISQHAHSEIVGMLPEGNWITRA----PSLKRKAILLAKVQDEAGHGLYLYSAAETLGVSREELI 106 (314)
T ss_pred CccccCHHHHHHHHHHHHHHhhHHHHhcchhccHHHhC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHH
Confidence 34679999999999999999999999998888876666 88887555 457899999999999999998854 23
Q ss_pred -ccccccCccccc--Cce--e--eeeehhcccccchhhhHHHHhHhhhCCCCcccchhhhhhhhhcccccchhH----HH
Q 017291 203 -GFLTKARKYTFF--KPK--F--IFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDF----FS 271 (374)
Q Consensus 203 -gfLtk~kkYTfF--~Pk--f--IfYAtYLSEKIGYwRYItIyRHLe~~Pe~rf~PIFk~FE~WCqDEnRHGDf----Fa 271 (374)
.++...++|.-. .|. | ..--.||-+ ||. |..+.-|. .-.+-|+=.-...=|..|--|-.. .-
T Consensus 107 ~a~~r~~~~f~n~fe~P~~dwAdtvvr~~L~D--~a~--~~~~~~L~---~sSy~plA~~a~Ki~KEe~yH~rhg~~wl~ 179 (314)
T PRK13778 107 DDLLSGKAKYSSIFNYPTLTWADVGVIGWLVD--GAA--IMNQVPLC---RCSYGPYARAMVRICKEESFHQRQGEEILL 179 (314)
T ss_pred HHHhcchHHhcccccCCCCCHHHHHHHHHHHH--HHH--HHHHHHHh---cCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377777776533 111 0 001112222 111 11122333 455567777788888888665433 33
Q ss_pred HHHhhC---ccchhhhhhHHHHHH
Q 017291 272 ALMKAQ---PQFLNDWKAKLWARF 292 (374)
Q Consensus 272 almraq---P~ll~g~~~kLW~RF 292 (374)
.|+..- -+.+.+-.+++|-..
T Consensus 180 rL~~GT~esr~r~Q~Ald~~Wp~~ 203 (314)
T PRK13778 180 ALARGTPAQKQMAQDALNRWWWPA 203 (314)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHH
Confidence 344322 235566678888754
No 71
>PF13438 DUF4113: Domain of unknown function (DUF4113)
Probab=36.97 E-value=19 Score=26.78 Aligned_cols=20 Identities=40% Similarity=0.815 Sum_probs=16.0
Q ss_pred hhhhhccCCCCccccChHHHh
Q 017291 66 TAIKETLLTPRFYTTDFDEME 86 (374)
Q Consensus 66 ~a~~etlLTPRFYTTDFd~m~ 86 (374)
=.++-..+||+ |||+.+++-
T Consensus 31 W~mr~~~~Sp~-yTT~w~el~ 50 (52)
T PF13438_consen 31 WKMRREMLSPR-YTTRWDELP 50 (52)
T ss_pred hHHHHHhcCCC-CcCCHHHcc
Confidence 45667789998 799999874
No 72
>PF14337 DUF4393: Domain of unknown function (DUF4393)
Probab=36.94 E-value=32 Score=30.09 Aligned_cols=47 Identities=30% Similarity=0.455 Sum_probs=38.4
Q ss_pred ChHHHHHHHHHHHhhhhccccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhh
Q 017291 132 QGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLN 190 (374)
Q Consensus 132 ~~e~R~~FidFLerScTaEFSGflLYKEl~rrlk~~NP~lae~F~lMaRDEARHAGFLN 190 (374)
++++|+.|..-|.+|+..... .+.+|...++-.-|+.||||=--+|.
T Consensus 32 ~e~Lremfa~LLass~d~~~~------------~~~hp~fv~Ii~qLsp~EA~iL~~l~ 78 (186)
T PF14337_consen 32 DEELREMFANLLASSMDKRKN------------DDVHPSFVEIIKQLSPDEARILKYLY 78 (186)
T ss_pred cHHHHHHHHHHHHHHhCcCcc------------ccccHHHHHHHHhCCHHHHHHHHHHH
Confidence 688999999999999987543 34578889999999999988666665
No 73
>PRK13966 nrdF2 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=36.52 E-value=20 Score=35.04 Aligned_cols=36 Identities=33% Similarity=0.462 Sum_probs=28.7
Q ss_pred ccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhh
Q 017291 151 FSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGF 188 (374)
Q Consensus 151 FSGflLYKEl~rrlk~~NP~lae~F~lMaRDEARHAGF 188 (374)
+|||...--+.||- +=|-+++++.+.+|||+-|.-|
T Consensus 168 ysgF~~~~~l~~~~--km~g~~~~i~~I~RDE~lH~~f 203 (324)
T PRK13966 168 YSGFYLPMYWSSRA--KLTNTADMIRLIIRDEAVHGYY 203 (324)
T ss_pred HHHHHHHHHHhhcC--CCCcHHHHHHHHHHhHHHHHHH
Confidence 56666555666643 5689999999999999999877
No 74
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=35.63 E-value=24 Score=32.51 Aligned_cols=29 Identities=24% Similarity=0.274 Sum_probs=25.4
Q ss_pred CccHHHHhhccccchhhhhhhhhhhhccc
Q 017291 168 NPVVAEIFSLMSRDEARHAGFLNKGLSDF 196 (374)
Q Consensus 168 NP~lae~F~lMaRDEARHAGFLNkal~Df 196 (374)
+..++.-|..++|||.+|++-+.++|.-.
T Consensus 101 ~~~~a~~f~~~~~~Ek~H~~~~~~~Le~~ 129 (166)
T COG1592 101 FKEAARSFRAAAKAEKRHAEMFRGLLERL 129 (166)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 47788889999999999999999988654
No 75
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=34.73 E-value=29 Score=29.63 Aligned_cols=45 Identities=22% Similarity=0.293 Sum_probs=40.3
Q ss_pred HHHHHHhhhhccccchhhHHHHhhhhcccCccHHHHhhccccchhhh
Q 017291 139 FVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARH 185 (374)
Q Consensus 139 FidFLerScTaEFSGflLYKEl~rrlk~~NP~lae~F~lMaRDEARH 185 (374)
-+|=|+-.+..|=...-.|.++..+. .||+++.+|.-++..|.+|
T Consensus 83 ~~~al~~g~~~E~~~i~~ye~~~~~~--~d~d~k~v~~~L~~~e~~H 127 (135)
T cd01048 83 LQDALEVGVLIEELDIADYDRLLERT--QNPDIRDVFENLQAASRNH 127 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHH
Confidence 56677778888999999999999999 7899999999999999888
No 76
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=34.48 E-value=47 Score=37.28 Aligned_cols=55 Identities=11% Similarity=0.209 Sum_probs=48.2
Q ss_pred HHHHHhhhhccccchhhHHHHhhhhcccCcc-HHHHhhccccchhhhhhhhhhhhccc
Q 017291 140 VEFLERSCTAEFSGFLLYKELGRRLKKTNPV-VAEIFSLMSRDEARHAGFLNKGLSDF 196 (374)
Q Consensus 140 idFLerScTaEFSGflLYKEl~rrlk~~NP~-lae~F~lMaRDEARHAGFLNkal~Df 196 (374)
.+-|+-.+-.|-.+..+|+|++.+. .+|. .+++|.-||..|..|.-.|-+-|...
T Consensus 943 ~~al~lAm~~Ekdai~fY~~la~~~--~d~e~~k~l~~~LA~EEk~Hl~~L~~~~d~~ 998 (1006)
T PRK12775 943 GNLFRIAIEFERRAVKFFKERVAET--PDGSVERQLYKELAAEEREHVALLTTEFERW 998 (1006)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888899999999999999998 6775 69999999999999998888777654
No 77
>PLN00179 acyl- [acyl-carrier protein] desaturase
Probab=33.20 E-value=28 Score=36.06 Aligned_cols=41 Identities=22% Similarity=0.532 Sum_probs=27.5
Q ss_pred hhhhHHHHhHhhhCCCCcccchhhhhhhhhcccccchhHHH
Q 017291 231 YWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFS 271 (374)
Q Consensus 231 YwRYItIyRHLe~~Pe~rf~PIFk~FE~WCqDEnRHGDfFa 271 (374)
|=|.|.-+--........-.|.=+|-..|--.||||||...
T Consensus 136 Y~~~Ln~~~gv~d~tg~~~~~W~~Wvr~WTAEENRHgdlL~ 176 (390)
T PLN00179 136 YQTMLNTLDGVRDETGASATPWARWTRAWTAEENRHGDLLN 176 (390)
T ss_pred HHHHHHHhcccccccCCCCCchhhhccccccccchHHHHHH
Confidence 34444433333333333456888999999999999999765
No 78
>PF10934 DUF2634: Protein of unknown function (DUF2634); InterPro: IPR020288 This entry is represented by the Bacteriophage EJ-1, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Bacteriophage EJ-1, Orf60 function has not been characterised. It has been shown to be simialr to XkdS (P54331 from SWISSPROT), which is encoded on a phage-like element (prophage) of PSBX found in Bacillus subtilis.
Probab=32.93 E-value=40 Score=28.49 Aligned_cols=63 Identities=27% Similarity=0.360 Sum_probs=44.6
Q ss_pred ccchhhhhhhccCCCCc----cccChH-HHhhcccccccccccHHHHHHHHHHH-hhccCCCCcccChhH
Q 017291 61 KKSNKTAIKETLLTPRF----YTTDFD-EMETLFNTEINKKLNQAEFEALLQEF-KTDYNQTHFVRNKEF 124 (374)
Q Consensus 61 ~~~~k~a~~etlLTPRF----YTTDFd-~m~~lf~~~id~~~~r~E~~Aml~Ef-r~DyNr~HFvR~~eF 124 (374)
.++.++...-+|.|+|| |.+||- +++.+++...+.+..+.|++.++.|= ..|+ |---|.|-+|
T Consensus 24 ~EAl~qwi~k~L~TeR~~~~iYs~~yG~ele~lig~~~~~~~~~sEi~r~I~EaL~~d~-rI~~V~~f~f 92 (112)
T PF10934_consen 24 LEALKQWIYKALNTERYRYLIYSWDYGSELEDLIGKNYPREYVESEIEREIEEALLQDP-RITSVENFSF 92 (112)
T ss_pred HHHHHHHHHHHhCCcccceeccccccchhHHHHhcCCCChHHHHHHHHHHHHHHHhcCC-CcceEEEEEE
Confidence 36678889999999996 888884 66777666667788889999999883 3333 4333444333
No 79
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=31.27 E-value=21 Score=27.49 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=18.7
Q ss_pred hhheeeccccch-hhHHhcCCChh
Q 017291 298 YVTMYLNDCQRT-AFYEGIGLDTK 320 (374)
Q Consensus 298 faTMyl~D~~R~-~FY~alGLD~~ 320 (374)
.++++++|.+|+ +||+.||+...
T Consensus 3 ~i~l~V~D~~~a~~FY~~LGf~~~ 26 (122)
T cd07235 3 AVGIVVADMAKSLDFYRRLGFDFP 26 (122)
T ss_pred eEEEEeccHHHHHHHHHHhCceec
Confidence 367899999976 79999998653
No 80
>smart00441 FF Contains two conserved F residues. A novel motif that often accompanies WW domains. Often contains two conserved Phe (F) residues.
Probab=29.91 E-value=59 Score=23.07 Aligned_cols=45 Identities=18% Similarity=0.357 Sum_probs=30.7
Q ss_pred cHHHHHHHHHHHhhc-cCC------CCcccChhHHHHhhcCChHHHHHHHHHHH
Q 017291 98 NQAEFEALLQEFKTD-YNQ------THFVRNKEFKEAADKMQGPLRQIFVEFLE 144 (374)
Q Consensus 98 ~r~E~~Aml~Efr~D-yNr------~HFvR~~eF~~~~d~l~~e~R~~FidFLe 144 (374)
.+++|.+||.|...+ ++- ..+..|+.|....+ +.+-+++|-+|+.
T Consensus 3 ~~~~F~~LL~e~~~~~~~~~W~~~~~~~~~d~ry~~l~~--~~~r~~lF~~~i~ 54 (55)
T smart00441 3 AKEAFKELLKEHEVITPDTTWSEARKKLKNDPRYKALLS--ESEREQLFEDHIE 54 (55)
T ss_pred HHHHHHHHHHhCCCCCCCCcHHHHHHHHhcChHHHHhcC--hHHHHHHHHHHHh
Confidence 357788888887766 553 35777788874333 4556688888875
No 81
>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain. Demethoxyubiquinone hydroxylases (DMQH) are members of the ferritin-like, diiron-carboxylate family which are present in eukaryotes (the CLK-1/CAT5 family) and prokaryotes (the Coq7 family). DMQH participates in one of the last steps of ubiquinone biosysnthesis and is responsible for DMQ hydroxylation, resulting in the formation of hydroxyubiquinone, a precursor of ubiquinone. CLK-1 is a mitochondrial inner membrane protein and Coq7 is a proposed interfacial integral membrane protein. Mutations in the Caenorhabditis elegans gene clk-1 affect biological timing and extend longevity. The conserved residues of a diiron center are present in this domain.
Probab=29.38 E-value=33 Score=31.22 Aligned_cols=110 Identities=20% Similarity=0.271 Sum_probs=74.5
Q ss_pred hccccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhcccccc------------cccccccccCcccccC
Q 017291 148 TAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYA------------LDLGFLTKARKYTFFK 215 (374)
Q Consensus 148 TaEFSGflLYKEl~rrlk~~NP~lae~F~lMaRDEARHAGFLNkal~Df~l~------------lDLgfLtk~kkYTfF~ 215 (374)
+.|+.-.-+|+--..-+ ++|.+++...-|+++|.+|--..|+.|.+.|.- .=||.+|. .--
T Consensus 10 AGE~gA~~IY~gQ~~~~--~~~~~~~~l~~~~~~E~~Hl~~f~~~i~~~~~rps~l~PlW~~~gf~lG~~ta-----l~G 82 (165)
T cd01042 10 AGEVGAVRIYRGQLAVA--RDPAVRPLIKEMLDEEKDHLAWFEELLPELGVRPSLLLPLWYVAGFALGALTA-----LLG 82 (165)
T ss_pred cchHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHH-----hhC
Confidence 45666677888666666 679999999999999999999999999998652 23333332 123
Q ss_pred ceeeeeehhcccccchhhhHHHHhHhh----hCCCCcccchhhhhhhhhcccccchhHHH
Q 017291 216 PKFIFYATYLSEKIGYWRYITIYRHLK----ANPEFQCYPIFKYFENWCQDENRHGDFFS 271 (374)
Q Consensus 216 PkfIfYAtYLSEKIGYwRYItIyRHLe----~~Pe~rf~PIFk~FE~WCqDEnRHGDfFa 271 (374)
+++.+..|.=-|+ .|-+|++ +=|+..-..+.+-++.-++||-+|.|.=.
T Consensus 83 ~~~a~~~~~avE~-------~V~~Hy~~ql~~L~~~~d~~l~~~l~~~r~DE~~H~d~A~ 135 (165)
T cd01042 83 KKAAMACTAAVET-------VVEEHYNDQLRELPAQPDKELRAIIEQFRDDELEHADIAE 135 (165)
T ss_pred hHHHHHHHHHHHH-------HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444 2444443 33533234677778999999999999633
No 82
>PF14098 SSPI: Small, acid-soluble spore protein I
Probab=28.98 E-value=60 Score=26.23 Aligned_cols=50 Identities=12% Similarity=0.117 Sum_probs=32.5
Q ss_pred ccHHHHHHHHHHHhhccCCCCccc-ChhHHHHhhcCChHHHHHHHHHHHhh
Q 017291 97 LNQAEFEALLQEFKTDYNQTHFVR-NKEFKEAADKMQGPLRQIFVEFLERS 146 (374)
Q Consensus 97 ~~r~E~~Aml~Efr~DyNr~HFvR-~~eF~~~~d~l~~e~R~~FidFLerS 146 (374)
...+|++.++.+=-.-..-+---- .==|+..|.++++..|+.+++.|++.
T Consensus 14 ~s~~el~~~I~daI~sgEE~~LPGLGVlFE~~W~~~~~~ek~~m~~~l~~~ 64 (65)
T PF14098_consen 14 SSKEELKDTIEDAIQSGEEKALPGLGVLFEVIWKNSDESEKQEMVNTLEQG 64 (65)
T ss_pred CCHHHHHHHHHHHHhccchhcCCchHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 345788877776543221111000 01389999999999999999999763
No 83
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=28.97 E-value=61 Score=27.12 Aligned_cols=65 Identities=20% Similarity=0.195 Sum_probs=46.1
Q ss_pred hhcCChHHHHHHHHHHHhhhhccccchhhHHHHhhhhcc-cCccHHHHhhccccchhhhhhhhhhhhccc
Q 017291 128 ADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKK-TNPVVAEIFSLMSRDEARHAGFLNKGLSDF 196 (374)
Q Consensus 128 ~d~l~~e~R~~FidFLerScTaEFSGflLYKEl~rrlk~-~NP~lae~F~lMaRDEARHAGFLNkal~Df 196 (374)
+..+|+.++..|..=+ ..|-..-=.|+++.+.-.+ .....+..|..++.+|.+|+-.+-++|..+
T Consensus 57 l~~i~~~~~~~le~a~----~~E~~~~~~~~~~~~~A~~egd~~~~~~~~~~~~~E~~H~~~~~~~l~~~ 122 (123)
T cd01046 57 LGKVSEDTKENLEMML----EGEAGANEGKKDAATEAKAEGLDEAHDFFHEAAKDEARHGKMLKGLLERY 122 (123)
T ss_pred HhcCcccHHHHHHHHH----HhHHHHHHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445555565555444 4444444457877776533 489999999999999999999999988754
No 84
>PLN00179 acyl- [acyl-carrier protein] desaturase
Probab=27.93 E-value=39 Score=35.04 Aligned_cols=61 Identities=18% Similarity=0.254 Sum_probs=39.2
Q ss_pred ChHHHHHHHHHHHhhh------hccccch--hhHHHHhhhhccc----------CccHHHHhhccccchhhhhhhhhhh
Q 017291 132 QGPLRQIFVEFLERSC------TAEFSGF--LLYKELGRRLKKT----------NPVVAEIFSLMSRDEARHAGFLNKG 192 (374)
Q Consensus 132 ~~e~R~~FidFLerSc------TaEFSGf--lLYKEl~rrlk~~----------NP~lae~F~lMaRDEARHAGFLNka 192 (374)
|+..=+.-+.+|..|= ..-+-|| ..|+|+.-++-.. +|.++.+-.-.|.||.||.-|--+.
T Consensus 186 Dm~~iE~t~q~li~~G~d~~~~~~py~~~vYtSFQErAT~VSH~NTarlA~~~gDp~la~icg~IAaDE~rHe~fY~~i 264 (390)
T PLN00179 186 DMRQIEKTIQYLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNTARLAKEHGDAKLAKICGTIAADEKRHETAYTRI 264 (390)
T ss_pred CHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCChHHHHHHHHHhccHHHHHHHHHHH
Confidence 4444444566666332 1223344 3577887666444 5999999999999999998765443
No 85
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=27.50 E-value=96 Score=21.76 Aligned_cols=35 Identities=20% Similarity=0.325 Sum_probs=24.2
Q ss_pred hHHHHhhcCChHHHHHHHHHHHhhhhccccchhhHHHHhhhhc
Q 017291 123 EFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLK 165 (374)
Q Consensus 123 eF~~~~d~l~~e~R~~FidFLerScTaEFSGflLYKEl~rrlk 165 (374)
.+.+.++.|||+.|+.|......- .-|+||++.+.
T Consensus 3 ~l~~~l~~L~~~~r~i~~l~~~~g--------~s~~eIa~~l~ 37 (54)
T PF08281_consen 3 ALQQALAQLPERQREIFLLRYFQG--------MSYAEIAEILG 37 (54)
T ss_dssp HHHHHHHCS-HHHHHHHHHHHTS-----------HHHHHHHCT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHC--------cCHHHHHHHHC
Confidence 467889999999999999754322 35788888773
No 86
>PF07651 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an endocytotic accessory protein that has been implicated in the formation of clathrin-coated pits. The domain is involved in phosphatidylinositol 4,5-bisphosphate binding and is a universal adaptor for nucleation of clathrin coats [, ].; GO: 0005543 phospholipid binding; PDB: 1HX8_A 3ZYM_A 1HFA_A 1HG2_A 3ZYL_B 3ZYK_A 1HG5_A 1HF8_A.
Probab=27.17 E-value=31 Score=31.63 Aligned_cols=104 Identities=27% Similarity=0.334 Sum_probs=59.4
Q ss_pred hcCChHHHHHHHHHHHhhhhccccchhhHHHHhhhhccc-CccHH----HHhhccccchhhhhhhhhhhhcccccccccc
Q 017291 129 DKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKT-NPVVA----EIFSLMSRDEARHAGFLNKGLSDFNYALDLG 203 (374)
Q Consensus 129 d~l~~e~R~~FidFLerScTaEFSGflLYKEl~rrlk~~-NP~la----e~F~lMaRDEARHAGFLNkal~Df~l~lDLg 203 (374)
.+-+.+-++..|+.+....-.+-++.-++..|.+|+... |+.++ =+++-|-||- |..|....++--+-..+++
T Consensus 13 ~~~~~ppk~Khv~~il~~t~~~~~~~~~~~~l~~Rl~~~~~w~V~~K~Lil~H~llr~G--~~~~~~~~~~~~~~~~~~~ 90 (280)
T PF07651_consen 13 SHDEAPPKEKHVREILSATSSPESVAFLFWALSRRLPLTRNWIVALKALILLHRLLRDG--HPSFLQELLRYNRRLFDLS 90 (280)
T ss_dssp -SSS---HHHHHHHHHHHCSTTS-HHHHHHHHHHHCTSS-SHHHHHHHHHHHHHHHHHS---CHHHHHHHHTT-----TT
T ss_pred CCCCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcC--chHHHHHHHHcccchhhhc
Confidence 333444556677877776544578888999999999887 77665 2455667774 4567777666555566777
Q ss_pred ccccc---CcccccCceeee-eehhcccccchhhh
Q 017291 204 FLTKA---RKYTFFKPKFIF-YATYLSEKIGYWRY 234 (374)
Q Consensus 204 fLtk~---kkYTfF~PkfIf-YAtYLSEKIGYwRY 234 (374)
.+.+. +.=+.=-..||= |+.||-||+...|=
T Consensus 91 ~~~~~~~~~~~~~~~~~~ir~Y~~yL~~rl~~~~~ 125 (280)
T PF07651_consen 91 NIWDFDDSSSKSWDYSAFIRAYAKYLDERLSFHRK 125 (280)
T ss_dssp ---T---SSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccCCccccchhHHHHHHHHHHHHHHHHHHH
Confidence 77661 111111135666 99999999766543
No 87
>PTZ00184 calmodulin; Provisional
Probab=26.64 E-value=1.5e+02 Score=23.32 Aligned_cols=69 Identities=13% Similarity=0.179 Sum_probs=35.3
Q ss_pred ccCCCCcccChhHHHHhhcCChHHHHHHHHHHHhhhhccccchhhHHHHhhhhccc------CccHHHHhhcccc
Q 017291 112 DYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKT------NPVVAEIFSLMSR 180 (374)
Q Consensus 112 DyNr~HFvR~~eF~~~~d~l~~e~R~~FidFLerScTaEFSGflLYKEl~rrlk~~------NP~lae~F~lMaR 180 (374)
|.|+.-.+-..+|...+..+.......-+.-+.+.+-..-+|.|-|+|..+-+... -..+..+|...-.
T Consensus 21 D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~ 95 (149)
T PTZ00184 21 DKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDR 95 (149)
T ss_pred cCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCC
Confidence 56666666667776555433221222334444444445556777777766543211 1245566665543
No 88
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=26.30 E-value=62 Score=26.92 Aligned_cols=56 Identities=21% Similarity=0.216 Sum_probs=42.0
Q ss_pred HHHHhhhhcccc-chhhHHHHhhhhccc-CccHHHHhhccccchhhhhhhhhhhhccc
Q 017291 141 EFLERSCTAEFS-GFLLYKELGRRLKKT-NPVVAEIFSLMSRDEARHAGFLNKGLSDF 196 (374)
Q Consensus 141 dFLerScTaEFS-GflLYKEl~rrlk~~-NP~lae~F~lMaRDEARHAGFLNkal~Df 196 (374)
+=|+..-..|.. ..-.|+++.+.-.+. +...+.+|.-++.||.+|+-.+=+.|.+.
T Consensus 76 ~~l~~~~~~E~~e~~~~y~~~~~~A~~e~d~~~~~~f~~i~~~E~~H~~~l~~~l~~l 133 (134)
T cd01041 76 ENLKAAIAGETYEYTEMYPEFAEVAEEEGFKEAARSFEAIAEAEKVHAERYKKALENL 133 (134)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 445555566653 446788777765443 78899999999999999999988887753
No 89
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=24.64 E-value=33 Score=32.02 Aligned_cols=19 Identities=26% Similarity=0.679 Sum_probs=15.6
Q ss_pred ccchhhhhhhhhcccccch
Q 017291 249 CYPIFKYFENWCQDENRHG 267 (374)
Q Consensus 249 f~PIFk~FE~WCqDEnRHG 267 (374)
..|-+.|++.||.||..-|
T Consensus 213 Lp~~w~~~~~~~~~~~~~~ 231 (248)
T cd06432 213 LPQEWLWCETWCSDESKKK 231 (248)
T ss_pred CChHHHHHHHHhcccccCc
Confidence 4567899999999998644
No 90
>smart00400 ZnF_CHCC zinc finger.
Probab=23.99 E-value=36 Score=24.88 Aligned_cols=34 Identities=29% Similarity=0.445 Sum_probs=26.1
Q ss_pred HhhhCCCCcccchhhhhhh--hhcccccchhHHHHHHhhC
Q 017291 240 HLKANPEFQCYPIFKYFEN--WCQDENRHGDFFSALMKAQ 277 (374)
Q Consensus 240 HLe~~Pe~rf~PIFk~FE~--WCqDEnRHGDfFaalmraq 277 (374)
|=+++|-..+.|- .| +|-.-..+||.++.+|+-.
T Consensus 8 h~d~~pSf~v~~~----kn~~~Cf~cg~gGd~i~fv~~~~ 43 (55)
T smart00400 8 HGEKTPSFSVSPD----KQFFHCFGCGAGGNVISFLMKYD 43 (55)
T ss_pred CCCCCCCEEEECC----CCEEEEeCCCCCCCHHHHHHHHH
Confidence 5578888888775 33 5666789999999999864
No 91
>cd08536 SAM_PNT-Mae Sterile alpha motif (SAM)/Pointed domain of Mae protein homolog. Mae (Modulator of the Activity of ETS) subfamily represents a group of SAM Pointed monodomain proteins. SAM Pointed domain is a protein-protein interaction domain. It can interact with other SAM pointed domains forming head-to-tail heterodimers and also provides a kinase docking site. For example, in Drosophila Mae is required for facilitating phosphorylation of the Yan factor and for blocking phosphorylation of the ETS-2 regulator. Mae interacts with the SAM Pointed domains of Yan and ETS-2. Binding enhances access of the kinase to the Yan phosphorylation site by providing a kinase docking site, or inhibits phosphorylation of ETS-2 by blocking its docking site. This type of factors participates in regulation of kinase signaling particularly during embryogenesis.
Probab=23.61 E-value=60 Score=25.57 Aligned_cols=55 Identities=24% Similarity=0.329 Sum_probs=35.9
Q ss_pred cHHHHHHHHHHHhhcc-CCCCcccChhHHHHhhcCChHHHHHHHHHHHhhhhccccchhhHHHHhhhh
Q 017291 98 NQAEFEALLQEFKTDY-NQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRL 164 (374)
Q Consensus 98 ~r~E~~Aml~Efr~Dy-Nr~HFvR~~eF~~~~d~l~~e~R~~FidFLerScTaEFSGflLYKEl~rrl 164 (374)
|..=++.++.||.=+. |-.+|.=| -+.+=.|+. -||+.| ++. .|=+||+.+.+||
T Consensus 10 V~~WL~w~~~ef~L~~~~~~~F~m~---Gk~LC~ls~------edF~~r--~P~-~GdiL~~~lq~~l 65 (66)
T cd08536 10 VRTWLRWVSARYQLEVVDLDKFLMN---GKGLCLMSL------EGFLYR--VPV-GGKLLYEDFQRRL 65 (66)
T ss_pred HHHHHHHHHHHhCCCCCCccccCCC---HHHHHcCCH------HHHHhh--cCC-ccHHHHHHHHHHh
Confidence 4444567777877766 66666322 234445553 366666 344 9999999999998
No 92
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=23.08 E-value=35 Score=26.54 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=21.4
Q ss_pred Hhhhheeeccccch-hhHHhcCCChhhh
Q 017291 296 SVYVTMYLNDCQRT-AFYEGIGLDTKEF 322 (374)
Q Consensus 296 sVfaTMyl~D~~R~-~FY~alGLD~~ey 322 (374)
+|+.+..++|.+++ +||+.||+....-
T Consensus 3 ~~~~~l~v~Dl~~s~~FY~~lG~~~~~~ 30 (120)
T cd08350 3 TTIPNLPSRDLDATEAFYARLGFSVGYR 30 (120)
T ss_pred cccceeEcCCHHHHHHHHHHcCCEEEec
Confidence 46788889999975 7998899976543
No 93
>PF05974 DUF892: Domain of unknown function (DUF892); InterPro: IPR010287 This domain is found in several hypothetical bacterial proteins of unknown function.; PDB: 4ERU_B 3OGH_A 2GS4_B 2GYQ_B 3HIU_A.
Probab=21.50 E-value=1e+02 Score=27.09 Aligned_cols=65 Identities=14% Similarity=0.170 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhhhhccccchhhHHHHhhhhcccCccHHHHhhccccchhhhhhhhhhhhcccccccc
Q 017291 135 LRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALD 201 (374)
Q Consensus 135 ~R~~FidFLerScTaEFSGflLYKEl~rrlk~~NP~lae~F~lMaRDEARHAGFLNkal~Df~l~lD 201 (374)
+|..|++-|..=-.+|-.+-=.+..+.++. .||.|+..|.--...-.+|..=|-+.+...|....
T Consensus 2 l~~~~~~~L~d~y~aE~q~~~~l~~~~~~a--~~~~L~~~l~~h~~eT~~q~~rLe~~~~~lg~~p~ 66 (159)
T PF05974_consen 2 LRDLFIDELRDLYSAEKQLLKALPKLAEAA--SSPELKAALEEHLEETEQQIERLEQIFEALGADPS 66 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---SSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCc
Confidence 578899999999999999999999999999 67999999998777777888888888888876543
No 94
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=21.06 E-value=71 Score=26.11 Aligned_cols=30 Identities=33% Similarity=0.657 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhhhhccccchhhHHHHhhhh
Q 017291 135 LRQIFVEFLERSCTAEFSGFLLYKELGRRL 164 (374)
Q Consensus 135 ~R~~FidFLerScTaEFSGflLYKEl~rrl 164 (374)
.++-|++||..+|..||.-.+-=..|..+|
T Consensus 7 ~~~Q~~~~l~~~~~~Ef~~I~~Er~v~~kL 36 (109)
T PF03980_consen 7 VHQQMIEFLEENCKKEFEEILEERDVVEKL 36 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 467799999999999999877655566665
No 95
>PRK10236 hypothetical protein; Provisional
Probab=20.59 E-value=1.1e+02 Score=30.06 Aligned_cols=48 Identities=13% Similarity=0.108 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhhccCCCCcccCh-------hHHHHhhcCChHHHHHHHHHHHhhh
Q 017291 100 AEFEALLQEFKTDYNQTHFVRNK-------EFKEAADKMQGPLRQIFVEFLERSC 147 (374)
Q Consensus 100 ~E~~Aml~Efr~DyNr~HFvR~~-------eF~~~~d~l~~e~R~~FidFLerSc 147 (374)
+=+.-..+.++..||++-=+-+- =++++|++||++.|++|.+=|..|.
T Consensus 91 eIL~DVc~~LKV~y~~~~st~~iE~~il~kll~~a~~kms~eE~~~L~~~l~~~l 145 (237)
T PRK10236 91 AILLDVSKRLKLKADKEMSTFEIEQQLLEQFLRNTWKKMDEEHKQEFLHAVDARV 145 (237)
T ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHhhhc
Confidence 33344445566666664332221 2478999999999999999998884
No 96
>TIGR03092 SASP_sspI small, acid-soluble spore protein I. This protein family is restricted to a subset of endospore-forming bacteria such as Bacillus subtilis, all of which are in the Firmicutes (low-GC Gram-positive) lineage. It is a minor SASP (small, acid-soluble spore protein) designated SspI. The gene in Bacillus subtilis previously was designated ysfA.
Probab=20.50 E-value=1.1e+02 Score=24.97 Aligned_cols=49 Identities=12% Similarity=0.133 Sum_probs=32.1
Q ss_pred cHHHHHHHHHHHhhccCCCCccc-ChhHHHHhhcCChHHHHHHHHHHHhh
Q 017291 98 NQAEFEALLQEFKTDYNQTHFVR-NKEFKEAADKMQGPLRQIFVEFLERS 146 (374)
Q Consensus 98 ~r~E~~Aml~Efr~DyNr~HFvR-~~eF~~~~d~l~~e~R~~FidFLerS 146 (374)
..+|++.++..--.-..-+.--- .==|+..|.+++++.+.++++-|++.
T Consensus 14 s~~elk~~I~daI~sgEEk~LPGLGVlFE~~W~~~~~~ek~~m~~~l~~~ 63 (65)
T TIGR03092 14 TKEQLEATIVDAIQSGEEKMLPGLGVLFEAIWKHANEQEKDEMLETLEQG 63 (65)
T ss_pred CHHHHHHHHHHHHhccchhcCCccHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 45677777766433221111100 01389999999999999999999874
No 97
>PLN02964 phosphatidylserine decarboxylase
Probab=20.40 E-value=1.7e+02 Score=32.03 Aligned_cols=64 Identities=17% Similarity=0.235 Sum_probs=42.6
Q ss_pred cccHHH---HHHHHHHHhhccCCCCcccChhHHHHhhcCC-----hHHHHHHHHHHHhhhhccccchhhHHHHhhhhcc
Q 017291 96 KLNQAE---FEALLQEFKTDYNQTHFVRNKEFKEAADKMQ-----GPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKK 166 (374)
Q Consensus 96 ~~~r~E---~~Aml~Efr~DyNr~HFvR~~eF~~~~d~l~-----~e~R~~FidFLerScTaEFSGflLYKEl~rrlk~ 166 (374)
.+.++| |+.|++++ |.|..-.+--+||....+.+. ++.++.|- ..-.+=+|++-+.||.+=++.
T Consensus 172 ~pte~e~~fi~~mf~~~--D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk-----~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 172 DPVETERSFARRILAIV--DYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFK-----AADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred CCCHHHHHHHHHHHHHh--CCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHH-----HhCCCCCCcCCHHHHHHHHHh
Confidence 344455 88899886 677777777788876655542 22444444 335566899999999876654
No 98
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=20.18 E-value=77 Score=26.25 Aligned_cols=59 Identities=19% Similarity=0.246 Sum_probs=46.9
Q ss_pred HHHHHhhhhccccchhhHHHHhhhhcc-cCccHHHHhhccccchhhhhhhhhhhhccccc
Q 017291 140 VEFLERSCTAEFSGFLLYKELGRRLKK-TNPVVAEIFSLMSRDEARHAGFLNKGLSDFNY 198 (374)
Q Consensus 140 idFLerScTaEFSGflLYKEl~rrlk~-~NP~lae~F~lMaRDEARHAGFLNkal~Df~l 198 (374)
.+-|+.....|-.-.-.|+++.+...+ ..+..+.+|.-...||-+|.-++++.|...-.
T Consensus 83 ~~~l~~~l~~E~~~~~~y~~~~~~A~~~~D~~t~~~l~~~~~~e~~h~~~l~~~l~~~~~ 142 (153)
T cd00907 83 PEMLENDLALEYEAIAALNEAIALCEEVGDYVSRDLLEEILEDEEEHIDWLETQLDLIDK 142 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666677777777788888765532 58999999999999999999999998876543
Done!