BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017292
(374 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6PKG0|LARP1_HUMAN La-related protein 1 OS=Homo sapiens GN=LARP1 PE=1 SV=2
Length = 1096
Score = 213 bits (543), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 113/216 (52%), Positives = 147/216 (68%), Gaps = 16/216 (7%)
Query: 151 SESPPSNS-VGYFFGSTPPENHGPRPSKLSVSPHGTLSSGSPPVGS---MPKSFPPFQHP 206
S +PP S VG+ S H PR + +S SP S G+P VGS P+S P FQHP
Sbjct: 823 SSNPPLESHVGWVMDS---REHRPRTASISSSP----SEGTPTVGSYGCTPQSLPKFQHP 875
Query: 207 SHQLLEENGFRQQKYLKFRKRCLNERKKLGIGCSEEMNTLYRFWSYFLREMFIPSMYNEF 266
SH+LL+ENGF Q Y K+R+RCLNERK+LGIG S+EMNTL+RFWS+FLR+ F MY EF
Sbjct: 876 SHELLKENGFTQHVYHKYRRRCLNERKRLGIGQSQEMNTLFRFWSFFLRDHFNKKMYEEF 935
Query: 267 QKFALEDAAASYNYGIECLFRFYSYGLEKECREDLYKDFEQLTLDFYHKGNLYGLEKYWA 326
++ ALEDA Y YG+ECLFR+YSYGLEK+ R D++KDF++ T+ Y G LYGLEK+WA
Sbjct: 936 KQLALEDAKEGYRYGLECLFRYYSYGLEKKFRLDIFKDFQEETVKDYEAGQLYGLEKFWA 995
Query: 327 FHHYRGLRDQKNPLKKHPELERLLREEYRSIDDFRA 362
F Y ++ L P+L+ L ++R ++DFR
Sbjct: 996 FLKYSKAKN----LDIDPKLQEYLG-KFRRLEDFRV 1026
Score = 33.9 bits (76), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 32 GSKTGGKGLKS-ISNELASAINDGLYFFEQEL 62
G +TG ++ +S ELA INDGL+++EQ+L
Sbjct: 659 GDRTGNHTSRAKMSAELAKVINDGLFYYEQDL 690
>sp|Q6ZQ58|LARP1_MOUSE La-related protein 1 OS=Mus musculus GN=Larp1 PE=1 SV=2
Length = 1072
Score = 213 bits (543), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 113/216 (52%), Positives = 147/216 (68%), Gaps = 16/216 (7%)
Query: 151 SESPPSNS-VGYFFGSTPPENHGPRPSKLSVSPHGTLSSGSPPVGS---MPKSFPPFQHP 206
S +PP S VG+ S H PR + +S SP S G+P VGS P+S P FQHP
Sbjct: 800 SSNPPLESHVGWVMDS---REHRPRTASISSSP----SEGTPAVGSYGCTPQSLPKFQHP 852
Query: 207 SHQLLEENGFRQQKYLKFRKRCLNERKKLGIGCSEEMNTLYRFWSYFLREMFIPSMYNEF 266
SH+LL+ENGF Q Y K+R+RCLNERK+LGIG S+EMNTL+RFWS+FLR+ F MY EF
Sbjct: 853 SHELLKENGFTQHVYHKYRRRCLNERKRLGIGQSQEMNTLFRFWSFFLRDHFNKKMYEEF 912
Query: 267 QKFALEDAAASYNYGIECLFRFYSYGLEKECREDLYKDFEQLTLDFYHKGNLYGLEKYWA 326
++ ALEDA Y YG+ECLFR+YSYGLEK+ R D++KDF++ T+ Y G LYGLEK+WA
Sbjct: 913 KQLALEDAKEGYRYGLECLFRYYSYGLEKKFRLDIFKDFQEETVKDYEAGQLYGLEKFWA 972
Query: 327 FHHYRGLRDQKNPLKKHPELERLLREEYRSIDDFRA 362
F Y ++ L P+L+ L ++R ++DFR
Sbjct: 973 FLKYSKAKN----LDIDPKLQEYLG-KFRRLEDFRV 1003
Score = 35.4 bits (80), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Query: 32 GSKTGGKGLKS-ISNELASAINDGLYFFEQELKTKR 66
G +TG ++ +S ELA INDGL+++EQ+L T++
Sbjct: 636 GDRTGNHTSRAKMSAELAKVINDGLFYYEQDLWTEK 671
>sp|Q9VAW5|LARP_DROME La-related protein OS=Drosophila melanogaster GN=larp PE=1 SV=5
Length = 1673
Score = 201 bits (511), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 127/337 (37%), Positives = 184/337 (54%), Gaps = 28/337 (8%)
Query: 43 ISNELASAINDGLYFFEQEL--KTKRSSRRKNSSSFENKDGNLRSSG-STSGVSNSKAVD 99
I+ +L + INDGL +E++L T + K + D + G + S +
Sbjct: 1163 ITQDLENIINDGLVNYEEDLWTTTNVVADYKTVNVISQADFEKLAGGRNKSVLPPQVVPP 1222
Query: 100 NSAFSINHEESGTSRRKQNKNIPRQQTSLKQRFFS---SNFRNHGTGRNSHGFISESPPS 156
F + +E+ N + S + RF++ S+ + T R + +PP
Sbjct: 1223 PPPFEEDLDETLVGDTTLNSTLNNTLKSRRARFYAAPNSHSIDPRTPRKRKLRHTANPPV 1282
Query: 157 NS-VGYFFGSTPPENHGPRPSKLSVSPHGTLSSGSPPVGS--------MPKSFPPFQHPS 207
+ VG+ + H PR + + S +G+ P S +P+S P FQHPS
Sbjct: 1283 EAHVGWLLDTV---EHRPRTTSMGSS------AGTSPTASSYGSFGSSVPQSLPVFQHPS 1333
Query: 208 HQLLEENGFRQQKYLKFRKRCLNERKKLGIGCSEEMNTLYRFWSYFLREMFIPSMYNEFQ 267
H LL+EN F QQ Y K+ RCL ER++LG G S+EMNTLYRFWS+FLRE F SMYNEF+
Sbjct: 1334 HALLKENNFTQQAYHKYHSRCLKERRRLGYGQSQEMNTLYRFWSFFLRENFNKSMYNEFR 1393
Query: 268 KFALEDAAASYNYGIECLFRFYSYGLEKECREDLYKDFEQLTLDFYHKGNLYGLEKYWAF 327
ALEDA + YG+ECLFRF+SYGLEK+ R ++Y+DF+ T+ Y G LYGLEK+WAF
Sbjct: 1394 SLALEDAGNGFRYGLECLFRFFSYGLEKKFRPNIYQDFQDETIADYETGQLYGLEKFWAF 1453
Query: 328 HHYRGLRDQKNPLKKHPELERLLREEYRSIDDFRAKE 364
Y ++ L+ P+L L+ +++I+DFR E
Sbjct: 1454 LKYYKNGEK---LEVQPKLAEYLK-SFKNIEDFRVVE 1486
>sp|Q659C4|LAR1B_HUMAN La-related protein 1B OS=Homo sapiens GN=LARP1B PE=1 SV=2
Length = 914
Score = 199 bits (507), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 104/207 (50%), Positives = 140/207 (67%), Gaps = 12/207 (5%)
Query: 159 VGYFFGSTPPENHGPRPSKLSVSPHGTLSSGSPPVGS---MPKSFPPFQHPSHQLLEENG 215
VG+ S + GP S +S S + + S G+P GS P SFP FQHPSH+LL+ENG
Sbjct: 651 VGWVMDS---RDRGPGTSSVSTS-NASPSEGAPLAGSYGCTPHSFPKFQHPSHELLKENG 706
Query: 216 FRQQKYLKFRKRCLNERKKLGIGCSEEMNTLYRFWSYFLREMFIPSMYNEFQKFALEDAA 275
F QQ Y K+R+RCL+ERK+LGIG S+EMNTL+RFWS+FLR+ F MY EF++ A EDA
Sbjct: 707 FTQQVYHKYRRRCLSERKRLGIGQSQEMNTLFRFWSFFLRDHFNKKMYEEFRQLAWEDAK 766
Query: 276 ASYNYGIECLFRFYSYGLEKECREDLYKDFEQLTLDFYHKGNLYGLEKYWAFHHYRGLRD 335
+Y YG+ECLFRFYSYGLEK+ R ++++DF++ T Y G LYGLEK+WA+ Y +
Sbjct: 767 ENYRYGLECLFRFYSYGLEKKFRREIFQDFQEETKKDYESGQLYGLEKFWAYLKYSQSKT 826
Query: 336 QKNPLKKHPELERLLREEYRSIDDFRA 362
Q P+L+ L ++ ++DFR
Sbjct: 827 Q----SIDPKLQEYLC-SFKRLEDFRV 848
Score = 36.2 bits (82), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Query: 32 GSKTGGKGLKS-ISNELASAINDGLYFFEQEL 62
G +TG ++ I++ELA INDGLY++EQ+L
Sbjct: 464 GDRTGTHMSRAKITSELAKVINDGLYYYEQDL 495
>sp|A7MGW6|HSCA_CROS8 Chaperone protein HscA OS=Cronobacter sakazakii (strain ATCC
BAA-894) GN=hscA PE=3 SV=1
Length = 616
Score = 38.1 bits (87), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 5/100 (5%)
Query: 45 NELASAINDGLYFFEQELKTKRSSRRKNSSS--FENKDGNLRSSGSTSGVSNSKAVDNSA 102
E+AS I D + F EQ+++ + + +K ++ E+ DG L+S G+ + A+D++
Sbjct: 507 GEIASMIQDSMSFAEQDVQARMLAEQKVEAARVLESLDGALKSDGALLSAAERAAIDDAM 566
Query: 103 FSINHEESG---TSRRKQNKNIPRQQTSLKQRFFSSNFRN 139
+ G ++ KN +Q R + R
Sbjct: 567 AQLRAAAEGNDASAIEDAIKNTDKQTQEFAARRMDESIRQ 606
>sp|A9MHJ8|HSCA_SALAR Chaperone protein HscA OS=Salmonella arizonae (strain ATCC BAA-731
/ CDC346-86 / RSK2980) GN=hscA PE=3 SV=1
Length = 616
Score = 35.8 bits (81), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
Query: 45 NELASAINDGLYFFEQELKTKRSSRRKNSSS--FENKDGNLRSSGSTSGVSNSKAVDNSA 102
+E+AS I D + F EQ++K + + +K ++ E+ G L + + + + +D++A
Sbjct: 507 SEIASMIKDSMSFAEQDVKARMLAEQKVEAARVLESLTGALTADAALLSAAERQCIDDAA 566
Query: 103 FSINHEESG---TSRRKQNKNIPRQQTSLKQRFFSSNFR 138
+N G + + KN+ +Q R + R
Sbjct: 567 AHLNAVAQGDDVDAIEQAIKNVDKQTQEFAARRMDQSVR 605
>sp|Q2RVF0|TOLB_RHORT Protein TolB OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB
8255) GN=tolB PE=3 SV=1
Length = 443
Score = 33.1 bits (74), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 73/180 (40%), Gaps = 25/180 (13%)
Query: 4 CFVLNLKSSRVCFLGNVLNDLQNSWAVEGSKTGGKGLKSISNELASAINDGLYFFEQELK 63
++ N+++ R LG+ ++A S G K + S+ A++ +E +L+
Sbjct: 238 VYLFNIETGRRELLGDFPG---MTFAPRFSPDGNKVIMSM------ALDGNTEIYEMDLR 288
Query: 64 TKRSSRRKNSSSFENK-----DGNLRSSGSTSGVSNSKAVDNSAFS-INHEESGTSRRKQ 117
T+RSSR N S + DG + S G + V N+ S + G R
Sbjct: 289 TRRSSRLTNHPSIDTSPSYAPDGRQITFNSDRGGAQQIYVMNADGSGVQRISFGDGRYAT 348
Query: 118 NKNIPRQQ----TSLK-QRFFSSNFRNHGTGRN--SHGFISESP---PSNSVGYFFGSTP 167
PR T LK RFF R G+G + GF+ E P P+ V FF P
Sbjct: 349 PVWSPRGDLIAFTKLKGGRFFIGAMRPDGSGEKILTEGFLVEGPTWAPNGRVLMFFRQDP 408
>sp|E1BE02|E2F7_BOVIN Transcription factor E2F7 OS=Bos taurus GN=E2F7 PE=3 SV=1
Length = 911
Score = 32.0 bits (71), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 136 NFRNHGTGRNSHGFISESPPSNSVGYFFGSTPPENHGPRPSKLSVSP-----HGTLSSGS 190
NF G G +H I + N ST P+ GP L +SP HG++ GS
Sbjct: 783 NFGLPGLGSTAHLLIGPAAMVNPKSSTLPSTDPQLQGP--CSLHLSPVMSRSHGSVQPGS 840
Query: 191 PPVGSMPKS 199
P GS+P +
Sbjct: 841 PAYGSLPAA 849
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 146,481,181
Number of Sequences: 539616
Number of extensions: 6674259
Number of successful extensions: 23640
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 197
Number of HSP's that attempted gapping in prelim test: 22229
Number of HSP's gapped (non-prelim): 1282
length of query: 374
length of database: 191,569,459
effective HSP length: 119
effective length of query: 255
effective length of database: 127,355,155
effective search space: 32475564525
effective search space used: 32475564525
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)