Query 017292
Match_columns 374
No_of_seqs 116 out of 132
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 12:04:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017292.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017292hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qf8_A Casein kinase II; casei 11.5 40 0.0014 30.4 -0.7 17 279-295 36-52 (182)
2 4dgl_A Casein kinase II subuni 11.2 77 0.0026 29.4 1.1 17 279-295 36-52 (215)
3 2ld7_B Paired amphipathic heli 10.4 1.7E+02 0.0059 22.5 2.7 25 250-275 12-39 (75)
4 1rw2_A ATP-dependent DNA helic 9.5 7.2E+02 0.025 21.4 6.6 47 280-330 76-122 (152)
5 3d85_C IL-23 subunit, interleu 9.0 1.8E+02 0.006 26.0 2.5 23 42-64 65-87 (178)
6 3qvn_A Manganese-containing su 8.9 1.4E+02 0.0048 27.1 1.9 27 343-369 101-127 (206)
7 2es4_D Lipase chaperone; prote 8.8 1.2E+02 0.0042 29.3 1.6 17 157-173 15-31 (332)
8 2cuj_A Transcriptional adaptor 8.4 8.3E+02 0.028 20.0 7.4 51 208-258 46-104 (108)
9 1q2z_A ATP-dependent DNA helic 7.1 8.6E+02 0.029 19.8 5.8 49 278-330 43-91 (120)
10 3ajb_B Peroxisomal biogenesis 6.8 94 0.0032 23.0 -0.2 20 343-365 20-39 (49)
No 1
>1qf8_A Casein kinase II; casein kinase beta subunit (1-182), Ser/Thr protein kinase, Zn finger, transferase; HET: MSE; 1.74A {Homo sapiens} SCOP: g.41.4.1 PDB: 3eed_A 1rqf_A
Probab=11.51 E-value=40 Score=30.44 Aligned_cols=17 Identities=18% Similarity=0.229 Sum_probs=14.6
Q ss_pred hhhhhHHHHHhhhhhhh
Q 017292 279 NYGIECLFRFYSYGLEK 295 (374)
Q Consensus 279 ~yGLEcLfRFYsygLe~ 295 (374)
.|||+..+-+|...|+-
T Consensus 36 L~GL~~~vp~y~~aLd~ 52 (182)
T 1qf8_A 36 LTGLNEQVPHYRQALDM 52 (182)
T ss_dssp GTTGGGTSTTHHHHHHH
T ss_pred hhCccccccCHHHHHHH
Confidence 48999999999998863
No 2
>4dgl_A Casein kinase II subunit beta; protein kinase, transferase; 3.00A {Homo sapiens} PDB: 2r6m_A 1jwh_C 1ds5_E*
Probab=11.15 E-value=77 Score=29.42 Aligned_cols=17 Identities=18% Similarity=0.229 Sum_probs=14.8
Q ss_pred hhhhhHHHHHhhhhhhh
Q 017292 279 NYGIECLFRFYSYGLEK 295 (374)
Q Consensus 279 ~yGLEcLfRFYsygLe~ 295 (374)
.|||+..+-+|.+.|+-
T Consensus 36 L~GL~~~Vp~y~~aLd~ 52 (215)
T 4dgl_A 36 LTGLNEQVPHYRQALDM 52 (215)
T ss_dssp TTTGGGTSSSHHHHHHH
T ss_pred ccCchhccccHHHHHHH
Confidence 48999999999999874
No 3
>2ld7_B Paired amphipathic helix protein SIN3A; transcription; NMR {Mus musculus}
Probab=10.38 E-value=1.7e+02 Score=22.53 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=16.5
Q ss_pred HhHH--HHhhc-CHHHHHHHHHHHHHHHh
Q 017292 250 WSYF--LREMF-IPSMYNEFQKFALEDAA 275 (374)
Q Consensus 250 WS~F--Lr~nF-N~~MY~EFR~lALEDa~ 275 (374)
.+|| .++.| |+.+|+||-++ |....
T Consensus 12 ~~Ff~kVK~~l~~~~~Y~eFLk~-lnlf~ 39 (75)
T 2ld7_B 12 SLFFDKVRKALRSAEAYENFLRC-LVIFN 39 (75)
T ss_dssp HHHHHHHHHHHCSHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH-HHHhh
Confidence 3455 56677 88999999764 33433
No 4
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=9.45 E-value=7.2e+02 Score=21.37 Aligned_cols=47 Identities=15% Similarity=0.339 Sum_probs=29.7
Q ss_pred hhhhHHHHHhhhhhhhhchHHHHHHHHHHHHhhhccCcccchhhHHHHHHh
Q 017292 280 YGIECLFRFYSYGLEKECREDLYKDFEQLTLDFYHKGNLYGLEKYWAFHHY 330 (374)
Q Consensus 280 yGLEcLfRFYsygLe~~fr~~ly~DF~~ltl~d~~~g~lYGLEK~wAFlkY 330 (374)
--+|||-.|=.-.+. .-.+..|.||.......+..+++ .-||..+.-
T Consensus 76 KA~ecL~~lR~~~i~-~~ep~~yN~Fl~~LK~~l~~~~l---~~FW~~Iv~ 122 (152)
T 1rw2_A 76 KSIDCIRAFREEAIK-FSEEQRFNNFLKALQEKVEIKQL---NHFWEIVVQ 122 (152)
T ss_dssp HHHHHHHHHHHHHHH-HTCSHHHHHHHHHHHHHHHHSCC---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-ccChHHHHHHHHHHHHHHHhhhH---HHHHHHHHH
Confidence 345555443332222 12577899998888777766665 778997664
No 5
>3d85_C IL-23 subunit, interleukin-23 subunit P19; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} PDB: 3d87_A* 3qwr_B* 3duh_C*
Probab=8.98 E-value=1.8e+02 Score=26.04 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=18.9
Q ss_pred cccHHHHHHHhhhhhhhHHhhhh
Q 017292 42 SISNELASAINDGLYFFEQELKT 64 (374)
Q Consensus 42 kis~eLas~INDGLy~YEqdL~~ 64 (374)
.-++--.++|-.||.|||+.|..
T Consensus 65 dnsq~CLqRi~qgLvFY~~LLgS 87 (178)
T 3d85_C 65 DNSQFCLQRIHQGLIFYEKLLGS 87 (178)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHTS
T ss_pred cchHHHHHHHHHHHHHHHHHccc
Confidence 34566789999999999998864
No 6
>3qvn_A Manganese-containing superoxide dismutase; Mn superoxide dismutase, oxidoreductase; 2.60A {Candida albicans}
Probab=8.90 E-value=1.4e+02 Score=27.06 Aligned_cols=27 Identities=11% Similarity=0.196 Sum_probs=22.4
Q ss_pred chHHHHHHHhhcCCchhhcchhhhhhh
Q 017292 343 HPELERLLREEYRSIDDFRAKERVNSL 369 (374)
Q Consensus 343 ~p~L~~~L~e~~ktleDFr~~~~~~~~ 369 (374)
.|+|.+.|.+.|.|+|.|+......+.
T Consensus 101 ~~~L~~aI~~~FGS~d~fk~~F~~aa~ 127 (206)
T 3qvn_A 101 SSALGKQIVAQYGSVSNLIDITNSKLA 127 (206)
T ss_dssp TSHHHHHHHHHTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 459999999999999999987765543
No 7
>2es4_D Lipase chaperone; protein-protein complex, steric chaperone, triacylglycerol hydrolase, all alpha helix protein, A/B hydrolase fold; 1.85A {Burkholderia glumae} SCOP: a.137.15.1
Probab=8.78 E-value=1.2e+02 Score=29.32 Aligned_cols=17 Identities=12% Similarity=0.176 Sum_probs=0.0
Q ss_pred CccceeecCCCCCCCCC
Q 017292 157 NSVGYFFGSTPPENHGP 173 (374)
Q Consensus 157 ~~vGw~~~~~~~e~h~~ 173 (374)
+-+||-|...|....-+
T Consensus 15 ~~~~~~~~~~~~~~~~~ 31 (332)
T 2es4_D 15 HIEGRHMPAAPSPAPAG 31 (332)
T ss_dssp -----------------
T ss_pred ceeeeecCCCCccCCCC
Confidence 45899998887665533
No 8
>2cuj_A Transcriptional adaptor 2-like; transcriptional regulation, nuclear protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.18
Probab=8.42 E-value=8.3e+02 Score=19.97 Aligned_cols=51 Identities=22% Similarity=0.372 Sum_probs=35.2
Q ss_pred HHhhhhcCCchhhhHHHHHHHHHHHhhcCCCCcccchhhh--------HHHhHHHHhhc
Q 017292 208 HQLLEENGFRQQKYLKFRKRCLNERKKLGIGCSEEMNTLY--------RFWSYFLREMF 258 (374)
Q Consensus 208 h~lL~engF~qq~Y~kfr~~cL~qRk~~g~G~s~eMntLy--------RFWS~FLr~nF 258 (374)
.+|-.........|...+...+.|..+.|.=.-.+...|+ |.|-||+...+
T Consensus 46 ~~LCs~lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~kID~~K~~rIydff~~~GW 104 (108)
T 2cuj_A 46 KELCQVVRLVPGAYLEYKSALLNECHKQGGLRLAQARALIKIDVNKTRKIYDFLIREGY 104 (108)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCcHHHHHHHhcccHHHHHHHHHHHHHcCC
Confidence 4666778999999999999999998766542223444444 45666655443
No 9
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=7.06 E-value=8.6e+02 Score=19.77 Aligned_cols=49 Identities=14% Similarity=0.345 Sum_probs=30.9
Q ss_pred hhhhhhHHHHHhhhhhhhhchHHHHHHHHHHHHhhhccCcccchhhHHHHHHh
Q 017292 278 YNYGIECLFRFYSYGLEKECREDLYKDFEQLTLDFYHKGNLYGLEKYWAFHHY 330 (374)
Q Consensus 278 ~~yGLEcLfRFYsygLe~~fr~~ly~DF~~ltl~d~~~g~lYGLEK~wAFlkY 330 (374)
|.--+|||-.|=...+. .-.+..|.+|.......+..+++ --||..+.-
T Consensus 43 y~ka~ecl~~~R~~~i~-~~ep~~yN~Fl~~Lk~~~~~~~l---~~FW~~iv~ 91 (120)
T 1q2z_A 43 FMKSIDCIRAFREEAIK-FSEEQRFNNFLKALQEKVEIKQL---NHFWEIVVQ 91 (120)
T ss_dssp HHHHHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHHHTTST---THHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-ccChHHHHHHHHHHHHHHHhhhH---HHHHHHHHH
Confidence 33356666444333222 23578899998888777777765 678986654
No 10
>3ajb_B Peroxisomal biogenesis factor 19; all alpha, protein-protein complex, protein transport; 2.50A {Homo sapiens}
Probab=6.78 E-value=94 Score=23.02 Aligned_cols=20 Identities=40% Similarity=0.647 Sum_probs=15.6
Q ss_pred chHHHHHHHhhcCCchhhcchhh
Q 017292 343 HPELERLLREEYRSIDDFRAKER 365 (374)
Q Consensus 343 ~p~L~~~L~e~~ktleDFr~~~~ 365 (374)
++||+++|. ..|+||-....
T Consensus 20 d~ELdeLLD---SALeDFdKak~ 39 (49)
T 3ajb_B 20 DRELEELLE---SALDDFDKAKP 39 (49)
T ss_dssp CCHHHHHHH---HHHTHHHHTSC
T ss_pred cHHHHHHHH---HHHHhhccccC
Confidence 569999998 47999966543
Done!