Query 017292
Match_columns 374
No_of_seqs 116 out of 132
Neff 3.3
Searched_HMMs 13730
Date Mon Mar 25 12:04:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017292.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017292hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qf8a_ g.41.4.1 (A:) Casein k 35.2 3 0.00022 35.3 -0.7 15 280-294 31-45 (173)
2 d1kkca2 d.44.1.1 (A:98-213) Mn 20.7 20 0.0015 27.8 1.9 28 341-368 9-36 (116)
3 d1my6a2 d.44.1.1 (A:89-198) Fe 16.5 30 0.0022 26.3 2.0 26 343-368 7-32 (110)
4 d1ma1a2 d.44.1.1 (A:92-204) Fe 15.0 34 0.0024 26.3 1.9 27 343-369 7-33 (113)
5 d1idsa2 d.44.1.1 (A:86-199) Fe 12.9 41 0.003 25.8 1.9 26 343-368 7-32 (114)
6 d1gv3a2 d.44.1.1 (A:127-237) M 12.7 43 0.0031 25.5 1.9 27 343-369 7-33 (111)
7 d1mnga2 d.44.1.1 (A:93-203) Mn 12.2 45 0.0033 25.3 1.9 27 343-369 7-33 (111)
8 d1eysh2 f.23.10.1 (H:7-43) Pho 11.4 45 0.0032 21.8 1.4 11 244-254 8-18 (37)
9 d1uera2 d.44.1.1 (A:85-191) Ca 10.8 56 0.0041 24.6 2.0 27 343-369 6-32 (107)
10 d1wb8a2 d.44.1.1 (A:93-208) Fe 10.5 55 0.004 25.1 1.9 25 343-367 10-34 (116)
No 1
>d1qf8a_ g.41.4.1 (A:) Casein kinase II beta subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.20 E-value=3 Score=35.35 Aligned_cols=15 Identities=20% Similarity=0.357 Sum_probs=14.1
Q ss_pred hhhhHHHHHhhhhhh
Q 017292 280 YGIECLFRFYSYGLE 294 (374)
Q Consensus 280 yGLEcLfRFYsygLe 294 (374)
|||+..+.+|+..|+
T Consensus 31 ~GL~~~v~~y~~al~ 45 (173)
T d1qf8a_ 31 TGLNEQVPHYRQALD 45 (173)
T ss_dssp TTGGGTSTTHHHHHH
T ss_pred cCchhccccHHHHHH
Confidence 999999999999887
No 2
>d1kkca2 d.44.1.1 (A:98-213) Mn superoxide dismutase (MnSOD) {Aspergillus fumigatus [TaxId: 5085]}
Probab=20.69 E-value=20 Score=27.80 Aligned_cols=28 Identities=18% Similarity=0.369 Sum_probs=23.0
Q ss_pred CCchHHHHHHHhhcCCchhhcchhhhhh
Q 017292 341 KKHPELERLLREEYRSIDDFRAKERVNS 368 (374)
Q Consensus 341 ~~~p~L~~~L~e~~ktleDFr~~~~~~~ 368 (374)
.-.|+|++.|.+.|.|+|.|+.+....+
T Consensus 9 ~p~~~L~~~I~~~FGS~d~fk~~f~~~a 36 (116)
T d1kkca2 9 DQAPVLKAAIEQRWGSFDKFKDAFNTTL 36 (116)
T ss_dssp GGCHHHHHHHHHHHSSHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3468899999999999999998765544
No 3
>d1my6a2 d.44.1.1 (A:89-198) Fe superoxide dismutase (FeSOD) {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=16.46 E-value=30 Score=26.26 Aligned_cols=26 Identities=15% Similarity=0.349 Sum_probs=22.3
Q ss_pred chHHHHHHHhhcCCchhhcchhhhhh
Q 017292 343 HPELERLLREEYRSIDDFRAKERVNS 368 (374)
Q Consensus 343 ~p~L~~~L~e~~ktleDFr~~~~~~~ 368 (374)
.++|.+.|.+.|.|+|.|+.+....+
T Consensus 7 ~g~L~~~I~~~FGS~e~fk~~f~~~a 32 (110)
T d1my6a2 7 TGDVAARINSAFGSYDEFKAQFKNAA 32 (110)
T ss_dssp CHHHHHHHHHHHSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 58899999999999999998865444
No 4
>d1ma1a2 d.44.1.1 (A:92-204) Fe superoxide dismutase (FeSOD) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=14.95 E-value=34 Score=26.28 Aligned_cols=27 Identities=15% Similarity=0.385 Sum_probs=22.5
Q ss_pred chHHHHHHHhhcCCchhhcchhhhhhh
Q 017292 343 HPELERLLREEYRSIDDFRAKERVNSL 369 (374)
Q Consensus 343 ~p~L~~~L~e~~ktleDFr~~~~~~~~ 369 (374)
..+|.+.|.+.|.|+|.|+......+.
T Consensus 7 ~g~L~~~I~~~FGS~d~fk~~f~~~a~ 33 (113)
T d1ma1a2 7 SGKLAEYIEKDFGSFERFRKEFSQAAI 33 (113)
T ss_dssp CHHHHHHHHHHHSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 388999999999999999988655443
No 5
>d1idsa2 d.44.1.1 (A:86-199) Fe superoxide dismutase (FeSOD) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=12.90 E-value=41 Score=25.76 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=22.3
Q ss_pred chHHHHHHHhhcCCchhhcchhhhhh
Q 017292 343 HPELERLLREEYRSIDDFRAKERVNS 368 (374)
Q Consensus 343 ~p~L~~~L~e~~ktleDFr~~~~~~~ 368 (374)
.++|+++|.+.|.|+|.|+......+
T Consensus 7 ~g~L~~~I~~~FGS~d~fk~~f~~~a 32 (114)
T d1idsa2 7 TGELAAAIADAFGSFDKFRAQFHAAA 32 (114)
T ss_dssp CHHHHHHHHHHHSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCHHHHHHHHHHhh
Confidence 58999999999999999998865544
No 6
>d1gv3a2 d.44.1.1 (A:127-237) Mn superoxide dismutase (MnSOD) {Anabaena sp. [TaxId: 1167]}
Probab=12.71 E-value=43 Score=25.50 Aligned_cols=27 Identities=7% Similarity=0.262 Sum_probs=22.7
Q ss_pred chHHHHHHHhhcCCchhhcchhhhhhh
Q 017292 343 HPELERLLREEYRSIDDFRAKERVNSL 369 (374)
Q Consensus 343 ~p~L~~~L~e~~ktleDFr~~~~~~~~ 369 (374)
.++|.+.|.+.|.|+|.|+......+.
T Consensus 7 ~g~L~~~I~~~FGS~d~fk~~f~~~a~ 33 (111)
T d1gv3a2 7 TGDIAQEINQTFGSFEEFKKQFNQAGG 33 (111)
T ss_dssp CHHHHHHHHHHHSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 489999999999999999988655443
No 7
>d1mnga2 d.44.1.1 (A:93-203) Mn superoxide dismutase (MnSOD) {Thermus thermophilus [TaxId: 274]}
Probab=12.24 E-value=45 Score=25.29 Aligned_cols=27 Identities=15% Similarity=0.342 Sum_probs=22.8
Q ss_pred chHHHHHHHhhcCCchhhcchhhhhhh
Q 017292 343 HPELERLLREEYRSIDDFRAKERVNSL 369 (374)
Q Consensus 343 ~p~L~~~L~e~~ktleDFr~~~~~~~~ 369 (374)
..+|.+.|.+.|.|+|.|+......+.
T Consensus 7 ~g~L~~~Ie~~FGS~d~fk~~f~~~a~ 33 (111)
T d1mnga2 7 VGELKKAIDEQFGGFQALKEKLTQAAM 33 (111)
T ss_dssp CHHHHHHHHHHHSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCHHHHHHHHHHhhc
Confidence 488999999999999999987765544
No 8
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=11.35 E-value=45 Score=21.82 Aligned_cols=11 Identities=36% Similarity=1.186 Sum_probs=8.7
Q ss_pred hhhhHHHhHHH
Q 017292 244 NTLYRFWSYFL 254 (374)
Q Consensus 244 ntLyRFWS~FL 254 (374)
-+||-||-||.
T Consensus 8 l~ly~Fw~FFa 18 (37)
T d1eysh2 8 ITIWAFWLFFF 18 (37)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 36899999884
No 9
>d1uera2 d.44.1.1 (A:85-191) Cambialistic superoxide dismutase {Porphyromonas gingivalis [TaxId: 837]}
Probab=10.81 E-value=56 Score=24.55 Aligned_cols=27 Identities=11% Similarity=0.305 Sum_probs=22.4
Q ss_pred chHHHHHHHhhcCCchhhcchhhhhhh
Q 017292 343 HPELERLLREEYRSIDDFRAKERVNSL 369 (374)
Q Consensus 343 ~p~L~~~L~e~~ktleDFr~~~~~~~~ 369 (374)
..+|.+.|.+.|.|+|.|+......+.
T Consensus 6 ~g~L~~~I~~~FGS~d~fk~~f~~~a~ 32 (107)
T d1uera2 6 KGKLGEAIDKQFGSFEKFKEEFNTAGT 32 (107)
T ss_dssp CHHHHHHHHHHHSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 478999999999999999987665443
No 10
>d1wb8a2 d.44.1.1 (A:93-208) Fe superoxide dismutase (FeSOD) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=10.48 E-value=55 Score=25.12 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=21.4
Q ss_pred chHHHHHHHhhcCCchhhcchhhhh
Q 017292 343 HPELERLLREEYRSIDDFRAKERVN 367 (374)
Q Consensus 343 ~p~L~~~L~e~~ktleDFr~~~~~~ 367 (374)
.++|.+.|.+.|.|+|.|+......
T Consensus 10 ~g~l~~~I~~~FGS~d~fk~~f~~~ 34 (116)
T d1wb8a2 10 GGALADLINKQYGSFDRFKQVFTET 34 (116)
T ss_dssp CHHHHHHHHHHHSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4889999999999999999876543
Done!