Query 017293
Match_columns 374
No_of_seqs 207 out of 1439
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 07:17:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017293.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017293hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0182 Predicted translation 100.0 7E-102 2E-106 732.6 33.6 333 12-358 2-335 (346)
2 PRK05720 mtnA methylthioribose 100.0 5.8E-95 1.3E-99 710.2 35.6 341 13-372 3-343 (344)
3 PRK08334 translation initiatio 100.0 1.6E-94 3.5E-99 704.8 36.2 342 13-372 14-355 (356)
4 TIGR00512 salvage_mtnA S-methy 100.0 1.5E-94 3.3E-99 702.6 35.8 327 14-357 1-331 (331)
5 PRK05772 translation initiatio 100.0 2E-94 4.3E-99 707.4 36.7 345 12-371 15-362 (363)
6 PRK06036 translation initiatio 100.0 2.9E-93 6.3E-98 695.7 35.0 332 13-361 1-334 (339)
7 PRK06371 translation initiatio 100.0 1.2E-90 2.6E-95 672.8 31.2 316 10-360 9-324 (329)
8 KOG1468 Predicted translation 100.0 5.9E-91 1.3E-95 642.6 25.3 352 12-370 2-354 (354)
9 TIGR00524 eIF-2B_rel eIF-2B al 100.0 1.4E-81 3E-86 608.6 31.9 303 40-357 1-303 (303)
10 TIGR00511 ribulose_e2b2 ribose 100.0 6.2E-76 1.3E-80 569.6 29.6 299 42-370 1-299 (301)
11 PRK08535 translation initiatio 100.0 8.9E-75 1.9E-79 563.9 29.3 299 42-370 6-304 (310)
12 PRK08335 translation initiatio 100.0 1.1E-73 2.4E-78 543.6 29.1 271 41-360 4-274 (275)
13 COG1184 GCD2 Translation initi 100.0 2.5E-66 5.4E-71 494.0 27.9 288 42-360 5-292 (301)
14 PF01008 IF-2B: Initiation fac 100.0 2E-65 4.4E-70 492.6 26.7 281 54-357 1-282 (282)
15 KOG1466 Translation initiation 100.0 1.7E-57 3.7E-62 417.6 22.4 282 61-370 29-312 (313)
16 KOG1467 Translation initiation 100.0 2.8E-55 6.1E-60 431.5 21.4 298 46-361 233-545 (556)
17 KOG1465 Translation initiation 100.0 1.8E-53 3.8E-58 398.3 29.3 294 42-358 10-336 (353)
18 PRK06372 translation initiatio 100.0 6.4E-51 1.4E-55 382.7 22.4 248 48-360 4-251 (253)
19 TIGR00021 rpiA ribose 5-phosph 97.3 0.0038 8.2E-08 58.3 12.2 124 151-306 3-132 (218)
20 cd01398 RPI_A RPI_A: Ribose 5- 97.3 0.0027 5.9E-08 59.0 10.9 125 151-306 3-132 (213)
21 PRK10434 srlR DNA-bindng trans 97.1 0.016 3.4E-07 55.4 14.6 125 148-295 76-213 (256)
22 PRK00702 ribose-5-phosphate is 97.0 0.0097 2.1E-07 55.7 12.2 126 149-306 6-136 (220)
23 PF00455 DeoRC: DeoR C termina 97.0 0.013 2.8E-07 52.0 12.2 125 148-295 4-141 (161)
24 PRK13509 transcriptional repre 96.8 0.021 4.6E-07 54.3 12.9 123 148-295 78-212 (251)
25 PRK09802 DNA-binding transcrip 96.7 0.058 1.3E-06 51.9 14.9 125 148-295 91-228 (269)
26 PRK10411 DNA-binding transcrip 96.3 0.15 3.3E-06 48.2 14.9 124 148-295 78-214 (240)
27 PRK10906 DNA-binding transcrip 96.3 0.14 3.1E-06 48.8 14.4 125 148-295 76-213 (252)
28 COG1349 GlpR Transcriptional r 96.0 0.21 4.6E-06 47.6 14.5 124 149-295 77-213 (253)
29 PRK10681 DNA-binding transcrip 95.5 0.39 8.4E-06 45.7 13.7 124 149-295 78-214 (252)
30 cd00532 MGS-like MGS-like doma 93.5 0.74 1.6E-05 38.1 9.3 83 191-289 16-107 (112)
31 PF02142 MGS: MGS-like domain 93.2 0.22 4.7E-06 40.0 5.6 80 190-285 3-94 (95)
32 cd01424 MGS_CPS_II Methylglyox 91.4 2.8 6.1E-05 34.3 10.2 81 190-287 16-101 (110)
33 PLN02384 ribose-5-phosphate is 90.9 4.7 0.0001 38.8 12.4 126 153-307 39-170 (264)
34 smart00851 MGS MGS-like domain 90.5 2.7 5.9E-05 33.1 9.0 79 192-285 5-89 (90)
35 PRK13978 ribose-5-phosphate is 89.6 6 0.00013 37.3 11.8 126 152-306 10-139 (228)
36 cd01423 MGS_CPS_I_III Methylgl 89.6 1.4 3E-05 36.6 6.9 78 189-285 15-105 (116)
37 COG0120 RpiA Ribose 5-phosphat 88.3 11 0.00023 35.5 12.3 125 152-306 9-136 (227)
38 PRK05234 mgsA methylglyoxal sy 87.4 5.1 0.00011 34.9 9.2 89 189-289 19-114 (142)
39 PF01073 3Beta_HSD: 3-beta hyd 86.1 2 4.3E-05 41.4 6.5 106 182-293 2-119 (280)
40 COG2057 AtoA Acyl CoA:acetate/ 85.0 4.7 0.0001 37.8 8.1 103 223-361 68-187 (225)
41 PRK09932 glycerate kinase II; 73.5 5.1 0.00011 40.6 4.8 50 241-294 280-329 (381)
42 cd01422 MGS Methylglyoxal synt 72.2 22 0.00048 29.6 7.7 74 202-287 27-107 (115)
43 TIGR00045 glycerate kinase. Th 69.5 6.9 0.00015 39.6 4.7 50 241-294 279-328 (375)
44 PLN02331 phosphoribosylglycina 67.6 26 0.00056 32.4 7.8 71 185-259 8-91 (207)
45 COG1929 Glycerate kinase [Carb 67.0 8.1 0.00018 38.7 4.5 51 240-294 279-329 (378)
46 PRK10342 glycerate kinase I; P 66.9 8.6 0.00019 39.0 4.8 51 240-294 279-329 (381)
47 KOG3075 Ribose 5-phosphate iso 66.1 76 0.0017 30.4 10.5 95 187-296 52-151 (261)
48 COG4635 HemG Flavodoxin [Energ 66.0 8.1 0.00018 34.5 3.8 124 220-355 21-148 (175)
49 PF10087 DUF2325: Uncharacteri 66.0 24 0.00052 28.2 6.4 40 239-287 42-81 (97)
50 PLN02260 probable rhamnose bio 64.2 29 0.00064 37.4 8.6 91 201-293 379-485 (668)
51 PRK02947 hypothetical protein; 63.7 1.3E+02 0.0029 28.3 12.6 33 220-254 125-168 (246)
52 TIGR02428 pcaJ_scoB_fam 3-oxoa 62.7 86 0.0019 28.9 10.3 97 150-265 3-112 (207)
53 cd01988 Na_H_Antiporter_C The 62.4 81 0.0018 25.4 10.5 61 224-287 65-131 (132)
54 PRK00208 thiG thiazole synthas 62.0 52 0.0011 31.4 8.7 106 184-292 70-186 (250)
55 PLN02778 3,5-epimerase/4-reduc 61.4 33 0.00071 33.1 7.6 25 265-289 86-110 (298)
56 COG0426 FpaA Uncharacterized f 60.8 1.3E+02 0.0029 30.6 11.8 143 134-292 183-340 (388)
57 PRK05973 replicative DNA helic 60.2 1.6E+02 0.0034 27.9 12.6 115 168-292 63-194 (237)
58 TIGR00639 PurN phosphoribosylg 59.9 46 0.00099 30.3 7.8 66 186-255 10-87 (190)
59 COG2873 MET17 O-acetylhomoseri 59.3 40 0.00086 34.2 7.7 87 192-286 93-182 (426)
60 cd00293 USP_Like Usp: Universa 58.3 88 0.0019 24.5 10.3 58 226-287 67-130 (130)
61 PRK00414 gmhA phosphoheptose i 57.0 1.3E+02 0.0029 27.1 10.4 38 246-290 110-147 (192)
62 COG1737 RpiR Transcriptional r 55.0 2E+02 0.0043 27.6 16.3 63 221-290 149-213 (281)
63 cd04728 ThiG Thiazole synthase 53.6 86 0.0019 29.9 8.6 70 220-292 115-186 (248)
64 TIGR01470 cysG_Nterm siroheme 53.5 81 0.0018 28.9 8.4 94 168-289 8-102 (205)
65 cd01989 STK_N The N-terminal d 53.5 1.3E+02 0.0028 24.9 9.6 43 243-288 99-144 (146)
66 TIGR00273 iron-sulfur cluster- 53.5 1.5E+02 0.0033 30.6 11.2 52 246-298 180-232 (432)
67 PF03853 YjeF_N: YjeF-related 53.1 1.6E+02 0.0035 25.9 11.4 110 168-286 24-136 (169)
68 PRK01438 murD UDP-N-acetylmura 52.8 71 0.0015 32.9 8.8 71 169-255 16-86 (480)
69 PRK08574 cystathionine gamma-s 52.0 1.8E+02 0.0039 29.2 11.4 88 190-286 82-172 (385)
70 PF05690 ThiG: Thiazole biosyn 51.5 40 0.00087 32.0 6.0 115 168-292 61-186 (247)
71 PF02595 Gly_kinase: Glycerate 51.5 7.6 0.00016 39.3 1.3 52 239-294 278-329 (377)
72 PLN02735 carbamoyl-phosphate s 49.8 1.2E+02 0.0027 35.1 10.8 81 191-287 989-1074(1102)
73 PF02844 GARS_N: Phosphoribosy 48.6 31 0.00066 28.3 4.2 88 171-285 2-90 (100)
74 TIGR01140 L_thr_O3P_dcar L-thr 48.6 80 0.0017 30.7 8.0 87 189-286 76-163 (330)
75 PRK09191 two-component respons 48.4 1.2E+02 0.0026 27.8 8.9 95 187-289 119-218 (261)
76 TIGR01426 MGT glycosyltransfer 48.0 58 0.0013 32.3 7.1 32 254-291 92-123 (392)
77 PRK07812 O-acetylhomoserine am 47.9 1.9E+02 0.0042 29.7 11.0 90 190-288 98-192 (436)
78 PF02441 Flavoprotein: Flavopr 47.7 20 0.00044 30.1 3.2 106 173-287 3-116 (129)
79 PF06026 Rib_5-P_isom_A: Ribos 46.3 38 0.00083 30.5 4.9 78 220-307 10-89 (173)
80 TIGR01369 CPSaseII_lrg carbamo 46.0 1.5E+02 0.0034 34.1 10.8 79 192-286 955-1038(1050)
81 PF02254 TrkA_N: TrkA-N domain 45.8 31 0.00068 27.8 4.0 87 185-289 5-97 (116)
82 PF03709 OKR_DC_1_N: Orn/Lys/A 45.6 29 0.00063 28.7 3.8 66 221-291 10-77 (115)
83 cd00287 ribokinase_pfkB_like r 45.3 62 0.0013 28.2 6.2 69 200-288 23-91 (196)
84 PF13580 SIS_2: SIS domain; PD 45.2 38 0.00083 28.8 4.6 30 168-202 103-132 (138)
85 cd00614 CGS_like CGS_like: Cys 45.1 1.8E+02 0.0039 28.9 10.0 88 189-286 68-160 (369)
86 PF05368 NmrA: NmrA-like famil 44.2 1.8E+02 0.004 26.3 9.4 99 172-289 1-102 (233)
87 PRK12815 carB carbamoyl phosph 43.9 1.6E+02 0.0034 34.2 10.5 71 201-286 962-1037(1068)
88 COG1091 RfbD dTDP-4-dehydrorha 43.7 82 0.0018 30.7 7.0 58 239-296 42-107 (281)
89 cd05006 SIS_GmhA Phosphoheptos 43.6 1.7E+02 0.0038 25.6 8.8 33 221-255 121-153 (177)
90 PF01135 PCMT: Protein-L-isoas 43.2 23 0.00049 32.8 3.0 76 168-255 72-149 (209)
91 PRK05294 carB carbamoyl phosph 43.2 96 0.0021 35.8 8.7 65 220-290 972-1041(1066)
92 PRK13937 phosphoheptose isomer 43.0 2.5E+02 0.0053 25.1 11.0 31 221-253 126-156 (188)
93 COG2242 CobL Precorrin-6B meth 42.6 1.4E+02 0.0031 27.2 8.0 75 168-254 34-109 (187)
94 TIGR00474 selA seryl-tRNA(sec) 42.2 4.2E+02 0.009 27.5 12.7 89 195-288 155-252 (454)
95 cd05005 SIS_PHI Hexulose-6-pho 41.7 2.4E+02 0.0053 24.7 10.3 32 221-254 95-126 (179)
96 PRK07582 cystathionine gamma-l 41.5 1.1E+02 0.0023 30.6 7.8 81 192-286 81-167 (366)
97 PF00582 Usp: Universal stress 40.8 57 0.0012 25.9 4.8 42 243-287 98-139 (140)
98 PF06849 DUF1246: Protein of u 40.7 32 0.00069 29.3 3.2 85 182-286 2-94 (124)
99 CHL00194 ycf39 Ycf39; Provisio 40.4 1.5E+02 0.0032 28.6 8.4 90 191-290 15-110 (317)
100 PF04392 ABC_sub_bind: ABC tra 40.3 22 0.00047 34.2 2.6 38 246-290 183-220 (294)
101 TIGR00075 hypD hydrogenase exp 40.3 1.8E+02 0.004 29.4 9.0 48 235-287 177-224 (369)
102 TIGR03127 RuMP_HxlB 6-phospho 40.1 2.4E+02 0.0053 24.6 9.2 33 221-255 92-124 (179)
103 PRK05647 purN phosphoribosylgl 40.1 1.6E+02 0.0034 27.0 8.0 70 187-260 12-94 (200)
104 PRK05749 3-deoxy-D-manno-octul 39.7 1.8E+02 0.0038 29.2 9.2 102 168-288 49-154 (425)
105 PRK04425 Maf-like protein; Rev 39.6 1.9E+02 0.004 26.6 8.4 79 199-288 23-107 (196)
106 PRK13011 formyltetrahydrofolat 39.6 68 0.0015 31.2 5.8 63 186-254 99-172 (286)
107 PRK13789 phosphoribosylamine-- 39.0 67 0.0015 32.9 6.0 78 170-262 5-83 (426)
108 cd01987 USP_OKCHK USP domain i 38.6 2E+02 0.0044 22.9 9.8 62 223-287 57-123 (124)
109 PRK15062 hydrogenase isoenzyme 38.4 2.1E+02 0.0046 28.9 9.1 48 235-287 171-218 (364)
110 TIGR03599 YloV DAK2 domain fus 38.4 5.2E+02 0.011 27.5 13.9 102 41-144 53-160 (530)
111 PF05159 Capsule_synth: Capsul 38.2 1.5E+02 0.0033 27.8 8.0 85 187-291 140-228 (269)
112 TIGR01437 selA_rel uncharacter 38.0 4.1E+02 0.0089 26.3 12.5 16 271-286 169-184 (363)
113 PF11814 DUF3335: Peptidase_C3 37.9 1.3E+02 0.0028 28.0 7.0 68 191-258 58-141 (207)
114 PRK07810 O-succinylhomoserine 37.8 3.7E+02 0.008 27.2 11.1 88 189-286 98-190 (403)
115 PRK05443 polyphosphate kinase; 37.3 60 0.0013 35.7 5.5 48 187-234 380-428 (691)
116 cd05017 SIS_PGI_PMI_1 The memb 37.1 70 0.0015 26.2 4.9 53 228-289 26-78 (119)
117 PF13090 PP_kinase_C: Polyphos 37.1 43 0.00093 33.6 4.0 50 185-235 48-99 (352)
118 PRK15118 universal stress glob 37.0 31 0.00068 28.8 2.8 40 242-287 98-137 (144)
119 PRK05939 hypothetical protein; 36.7 1.6E+02 0.0035 29.8 8.3 84 190-286 76-166 (397)
120 PRK14364 Maf-like protein; Pro 36.6 2.2E+02 0.0048 25.7 8.3 77 199-286 15-97 (181)
121 PRK06702 O-acetylhomoserine am 36.2 4.6E+02 0.01 27.0 11.6 83 192-287 92-183 (432)
122 TIGR02429 pcaI_scoA_fam 3-oxoa 36.0 3.3E+02 0.0071 25.5 9.6 98 157-287 12-122 (222)
123 PRK01372 ddl D-alanine--D-alan 35.9 1.4E+02 0.003 28.5 7.4 36 221-256 29-65 (304)
124 COG0771 MurD UDP-N-acetylmuram 35.7 2.1E+02 0.0045 29.9 8.9 91 169-285 7-97 (448)
125 PLN02828 formyltetrahydrofolat 35.7 1.4E+02 0.0029 28.9 7.1 67 185-254 79-154 (268)
126 PRK03359 putative electron tra 35.1 2.8E+02 0.0061 26.5 9.2 89 170-289 57-147 (256)
127 PRK05784 phosphoribosylamine-- 34.9 68 0.0015 33.6 5.4 79 171-259 2-81 (486)
128 PRK15116 sulfur acceptor prote 34.9 4.2E+02 0.0091 25.5 11.9 42 246-296 120-162 (268)
129 PRK15029 arginine decarboxylas 34.9 1.4E+02 0.0031 33.1 8.0 86 204-292 2-96 (755)
130 cd00757 ThiF_MoeB_HesA_family 34.8 3.7E+02 0.008 24.8 10.3 58 220-288 80-143 (228)
131 COG1104 NifS Cysteine sulfinat 34.7 5.2E+02 0.011 26.4 12.3 103 168-286 61-176 (386)
132 KOG1430 C-3 sterol dehydrogena 34.7 2.3E+02 0.0051 28.6 8.9 104 185-292 12-128 (361)
133 PRK13566 anthranilate synthase 34.4 1.6E+02 0.0034 32.6 8.2 81 200-288 524-605 (720)
134 KOG0259 Tyrosine aminotransfer 34.3 3E+02 0.0064 28.3 9.3 119 149-286 108-237 (447)
135 PRK05967 cystathionine beta-ly 33.9 1.9E+02 0.0041 29.5 8.2 82 192-286 95-184 (395)
136 PF00391 PEP-utilizers: PEP-ut 33.6 32 0.0007 26.5 2.1 33 246-289 29-61 (80)
137 cd05005 SIS_PHI Hexulose-6-pho 33.5 1.2E+02 0.0027 26.6 6.2 60 221-290 52-111 (179)
138 PRK12320 hypothetical protein; 33.5 89 0.0019 34.4 6.1 53 236-290 51-103 (699)
139 PRK14106 murD UDP-N-acetylmura 33.4 2.6E+02 0.0057 28.3 9.4 60 190-256 18-77 (450)
140 PF02310 B12-binding: B12 bind 33.2 1.9E+02 0.0042 23.2 6.9 73 216-294 16-94 (121)
141 cd05565 PTS_IIB_lactose PTS_II 32.9 65 0.0014 26.3 3.8 68 171-243 2-87 (99)
142 PRK06084 O-acetylhomoserine am 31.8 4.5E+02 0.0097 26.9 10.7 85 192-286 89-178 (425)
143 COG0616 SppA Periplasmic serin 31.7 1.5E+02 0.0032 29.2 6.9 119 171-293 60-194 (317)
144 cd05212 NAD_bind_m-THF_DH_Cycl 31.6 2.3E+02 0.005 24.4 7.3 61 188-254 11-78 (140)
145 PRK06460 hypothetical protein; 31.5 2.8E+02 0.0061 27.7 9.0 58 223-286 104-165 (376)
146 PF08032 SpoU_sub_bind: RNA 2' 31.5 1.5E+02 0.0032 21.9 5.5 51 191-242 6-57 (76)
147 cd06454 KBL_like KBL_like; thi 31.2 4.7E+02 0.01 24.9 10.8 85 192-287 77-168 (349)
148 TIGR01521 FruBisAldo_II_B fruc 31.1 1E+02 0.0022 31.0 5.6 95 186-285 26-138 (347)
149 cd03466 Nitrogenase_NifN_2 Nit 31.0 5.9E+02 0.013 26.0 16.2 95 169-288 300-397 (429)
150 PRK05613 O-acetylhomoserine am 30.9 4.8E+02 0.01 26.8 10.8 87 192-287 100-191 (437)
151 KOG3349 Predicted glycosyltran 30.9 87 0.0019 27.9 4.4 50 168-230 80-129 (170)
152 TIGR00655 PurU formyltetrahydr 30.7 1.5E+02 0.0032 28.8 6.6 64 185-254 93-167 (280)
153 PRK08462 biotin carboxylase; V 30.7 1.3E+02 0.0029 30.6 6.7 78 170-262 5-91 (445)
154 PRK11337 DNA-binding transcrip 30.0 4.9E+02 0.011 24.7 10.3 48 204-254 191-238 (292)
155 PRK12767 carbamoyl phosphate s 30.0 1E+02 0.0022 29.7 5.4 58 191-256 14-78 (326)
156 PF02589 DUF162: Uncharacteris 30.0 39 0.00085 30.1 2.3 51 246-297 83-134 (189)
157 COG0451 WcaG Nucleoside-diphos 30.0 2.2E+02 0.0048 26.6 7.7 52 237-290 55-116 (314)
158 PRK08591 acetyl-CoA carboxylas 30.0 1.8E+02 0.004 29.6 7.6 77 171-262 4-89 (451)
159 PRK01710 murD UDP-N-acetylmura 29.9 3.9E+02 0.0084 27.4 10.0 92 169-285 14-105 (458)
160 PRK00770 deoxyhypusine synthas 29.8 88 0.0019 31.9 5.0 115 168-290 51-197 (384)
161 PF00072 Response_reg: Respons 29.8 1.2E+02 0.0027 23.4 5.1 79 205-292 1-82 (112)
162 PRK00648 Maf-like protein; Rev 29.7 3.1E+02 0.0067 25.0 8.1 42 247-288 63-107 (191)
163 PRK13010 purU formyltetrahydro 29.7 1.7E+02 0.0036 28.5 6.8 64 185-254 102-176 (289)
164 COG0424 Maf Nucleotide-binding 29.6 1.8E+02 0.004 26.7 6.6 75 199-283 21-101 (193)
165 PRK05968 hypothetical protein; 29.6 5.9E+02 0.013 25.5 11.3 86 192-287 94-183 (389)
166 TIGR03217 4OH_2_O_val_ald 4-hy 29.4 1.5E+02 0.0032 29.5 6.4 64 169-240 103-168 (333)
167 PLN03209 translocon at the inn 29.3 2.1E+02 0.0045 30.8 7.9 110 168-290 79-208 (576)
168 PLN02166 dTDP-glucose 4,6-dehy 29.2 1.4E+02 0.0031 30.6 6.6 107 169-289 120-234 (436)
169 cd01491 Ube1_repeat1 Ubiquitin 29.2 5.1E+02 0.011 25.2 10.1 110 153-288 9-137 (286)
170 PRK11557 putative DNA-binding 29.1 4.9E+02 0.011 24.4 10.1 33 220-254 194-226 (278)
171 TIGR01324 cysta_beta_ly_B cyst 28.9 6E+02 0.013 25.4 11.3 85 189-286 78-170 (377)
172 cd00555 Maf Nucleotide binding 28.9 3.4E+02 0.0073 24.4 8.2 79 199-287 17-101 (180)
173 cd01972 Nitrogenase_VnfE_like 28.7 6.4E+02 0.014 25.7 15.8 86 187-287 303-399 (426)
174 PF03162 Y_phosphatase2: Tyros 28.7 54 0.0012 29.1 2.9 36 155-196 80-115 (164)
175 COG0623 FabI Enoyl-[acyl-carri 28.1 5.4E+02 0.012 24.7 10.3 153 66-240 21-192 (259)
176 PRK13936 phosphoheptose isomer 28.1 4.5E+02 0.0097 23.7 11.9 32 221-254 131-165 (197)
177 cd05013 SIS_RpiR RpiR-like pro 27.9 3.2E+02 0.0069 21.9 8.2 62 223-291 34-97 (139)
178 PRK08133 O-succinylhomoserine 27.8 6.3E+02 0.014 25.3 11.8 85 192-286 92-181 (390)
179 PRK13399 fructose-1,6-bisphosp 27.6 1.3E+02 0.0028 30.3 5.6 101 186-293 28-146 (347)
180 cd05017 SIS_PGI_PMI_1 The memb 27.5 2.7E+02 0.0059 22.6 6.9 58 168-238 43-100 (119)
181 PRK06027 purU formyltetrahydro 27.4 1.8E+02 0.004 28.2 6.6 67 187-259 100-178 (286)
182 cd03377 TPP_PFOR_PNO Thiamine 27.4 6.7E+02 0.014 25.4 12.2 41 171-215 153-193 (365)
183 PRK07178 pyruvate carboxylase 27.2 1.7E+02 0.0036 30.3 6.7 83 171-262 4-88 (472)
184 PRK15005 universal stress prot 27.2 1E+02 0.0022 25.5 4.3 39 244-287 104-143 (144)
185 PRK05690 molybdopterin biosynt 27.1 5.3E+02 0.011 24.2 10.7 111 152-287 21-153 (245)
186 COG0074 SucD Succinyl-CoA synt 27.0 1.4E+02 0.003 29.3 5.5 92 189-285 78-173 (293)
187 PRK11337 DNA-binding transcrip 26.9 2.2E+02 0.0047 27.1 7.1 61 222-291 160-224 (292)
188 KOG1401 Acetylornithine aminot 26.9 7.2E+02 0.016 25.7 10.7 107 173-289 119-251 (433)
189 PRK08114 cystathionine beta-ly 26.8 2.7E+02 0.006 28.3 8.0 85 190-286 91-184 (395)
190 cd03784 GT1_Gtf_like This fami 26.7 2E+02 0.0043 28.4 7.0 33 253-291 103-135 (401)
191 PRK00884 Maf-like protein; Rev 26.7 3.9E+02 0.0084 24.4 8.2 41 248-288 61-104 (194)
192 PRK04056 Maf-like protein; Rev 26.6 4.1E+02 0.0088 23.9 8.3 80 199-288 18-103 (180)
193 PRK12342 hypothetical protein; 26.5 5.5E+02 0.012 24.5 9.5 93 170-293 54-148 (254)
194 PLN02409 serine--glyoxylate am 26.3 6.6E+02 0.014 25.1 12.3 86 192-286 76-174 (401)
195 PRK09195 gatY tagatose-bisphos 26.3 1.4E+02 0.0031 29.0 5.6 96 186-286 28-133 (284)
196 PF01053 Cys_Met_Meta_PP: Cys/ 26.2 6.2E+02 0.013 25.6 10.4 91 188-286 82-176 (386)
197 PRK00148 Maf-like protein; Rev 26.1 3.7E+02 0.008 24.5 8.0 41 248-288 60-103 (194)
198 TIGR03127 RuMP_HxlB 6-phospho 25.9 1.8E+02 0.0039 25.4 5.9 58 223-290 51-108 (179)
199 KOG1549 Cysteine desulfurase N 25.8 7.6E+02 0.017 25.6 10.9 80 203-286 132-216 (428)
200 PRK08248 O-acetylhomoserine am 25.8 5.2E+02 0.011 26.5 9.9 88 190-287 93-185 (431)
201 TIGR02006 IscS cysteine desulf 25.7 6.7E+02 0.015 24.9 12.3 78 202-286 92-177 (402)
202 TIGR03705 poly_P_kin polyphosp 25.5 88 0.0019 34.2 4.4 47 187-233 371-418 (672)
203 TIGR02371 ala_DH_arch alanine 25.5 5.5E+02 0.012 25.1 9.8 65 202-272 153-225 (325)
204 PRK09028 cystathionine beta-ly 25.4 7.2E+02 0.016 25.2 10.8 82 192-286 92-181 (394)
205 TIGR01214 rmlD dTDP-4-dehydror 25.4 1.9E+02 0.0041 26.9 6.3 26 265-290 76-101 (287)
206 COG1440 CelA Phosphotransferas 25.4 2E+02 0.0043 23.8 5.3 40 237-287 40-79 (102)
207 PF13685 Fe-ADH_2: Iron-contai 25.4 21 0.00046 34.0 -0.3 68 215-291 34-109 (250)
208 TIGR01325 O_suc_HS_sulf O-succ 25.4 6.8E+02 0.015 24.9 11.7 88 190-286 83-174 (380)
209 TIGR01326 OAH_OAS_sulfhy OAH/O 25.3 5.6E+02 0.012 25.9 10.0 89 189-287 85-178 (418)
210 TIGR01181 dTDP_gluc_dehyt dTDP 25.1 3.6E+02 0.0077 25.1 8.2 97 191-288 14-124 (317)
211 PRK08305 spoVFB dipicolinate s 25.1 1E+02 0.0022 28.4 4.1 22 190-211 23-44 (196)
212 PRK14368 Maf-like protein; Pro 25.1 4E+02 0.0086 24.3 8.0 78 199-287 23-106 (193)
213 PRK14362 Maf-like protein; Pro 25.0 4.1E+02 0.0088 24.6 8.1 41 248-288 72-115 (207)
214 PRK11557 putative DNA-binding 24.8 3.1E+02 0.0068 25.8 7.7 61 221-290 147-211 (278)
215 PRK12857 fructose-1,6-bisphosp 24.8 1.4E+02 0.0031 29.0 5.3 96 186-286 28-133 (284)
216 TIGR00172 maf MAF protein. Thi 24.6 4.4E+02 0.0095 23.8 8.1 41 248-288 62-105 (183)
217 TIGR00715 precor6x_red precorr 24.6 6E+02 0.013 24.2 9.5 86 185-288 137-230 (256)
218 PLN02206 UDP-glucuronate decar 24.5 2.3E+02 0.0049 29.2 7.1 109 168-290 118-234 (442)
219 PRK09987 dTDP-4-dehydrorhamnos 24.3 1.8E+02 0.0038 27.8 5.9 29 265-293 80-108 (299)
220 PRK04694 Maf-like protein; Rev 24.3 3.9E+02 0.0085 24.2 7.8 82 199-287 18-105 (190)
221 PRK14571 D-alanyl-alanine synt 24.2 1.6E+02 0.0035 28.2 5.6 14 246-259 52-65 (299)
222 PRK13896 cobyrinic acid a,c-di 24.2 4.3E+02 0.0093 27.4 8.9 89 191-291 21-115 (433)
223 PRK15456 universal stress prot 24.2 1.5E+02 0.0033 24.6 4.8 40 244-287 102-141 (142)
224 PRK05634 nucleosidase; Provisi 24.1 59 0.0013 29.3 2.4 25 263-287 127-151 (185)
225 PRK13527 glutamine amidotransf 24.1 1.7E+02 0.0037 26.4 5.5 82 203-292 3-88 (200)
226 PRK07503 methionine gamma-lyas 24.0 7.5E+02 0.016 24.9 10.7 87 192-287 96-186 (403)
227 TIGR02355 moeB molybdopterin s 23.9 6E+02 0.013 23.8 10.0 57 221-288 84-146 (240)
228 PF05673 DUF815: Protein of un 23.9 4.3E+02 0.0092 25.3 8.1 77 152-237 38-114 (249)
229 PRK05414 urocanate hydratase; 23.6 5.6E+02 0.012 27.3 9.4 38 85-122 218-256 (556)
230 PF01451 LMWPc: Low molecular 23.6 1.6E+02 0.0034 24.6 4.8 69 186-256 12-85 (138)
231 PRK00025 lpxB lipid-A-disaccha 23.6 3.9E+02 0.0085 26.0 8.4 70 199-288 217-287 (380)
232 PRK15482 transcriptional regul 23.5 3.6E+02 0.0078 25.6 7.9 78 204-290 137-218 (285)
233 PRK12475 thiamine/molybdopteri 23.3 7.3E+02 0.016 24.5 11.3 57 221-288 86-148 (338)
234 KOG1466 Translation initiation 23.3 7E+02 0.015 24.3 9.5 81 83-163 27-112 (313)
235 TIGR01228 hutU urocanate hydra 23.3 5.8E+02 0.013 27.0 9.5 38 85-122 209-247 (545)
236 PF04705 TSNR_N: Thiostrepton- 23.2 1.6E+02 0.0034 24.4 4.4 50 191-243 38-88 (115)
237 PF04413 Glycos_transf_N: 3-De 23.2 2.1E+02 0.0045 25.8 5.8 101 170-290 22-127 (186)
238 cd01743 GATase1_Anthranilate_S 23.2 2E+02 0.0044 25.3 5.7 66 220-291 14-81 (184)
239 cd01748 GATase1_IGP_Synthase T 23.1 2.9E+02 0.0062 24.7 6.7 68 220-292 14-82 (198)
240 PF01488 Shikimate_DH: Shikima 23.0 2E+02 0.0044 24.1 5.4 72 168-254 11-82 (135)
241 TIGR02326 transamin_PhnW 2-ami 22.9 7E+02 0.015 24.2 13.6 60 224-287 97-165 (363)
242 COG0299 PurN Folate-dependent 22.8 3.9E+02 0.0085 24.7 7.4 65 185-253 9-85 (200)
243 PRK09196 fructose-1,6-bisphosp 22.8 75 0.0016 31.9 3.0 95 186-285 28-140 (347)
244 PF05728 UPF0227: Uncharacteri 22.6 4.2E+02 0.009 23.9 7.6 28 267-294 67-94 (187)
245 COG0855 Ppk Polyphosphate kina 22.5 1.6E+02 0.0035 32.0 5.5 50 185-235 382-433 (696)
246 PRK02141 Maf-like protein; Rev 22.4 5.6E+02 0.012 23.7 8.5 81 199-287 27-113 (207)
247 PRK07688 thiamine/molybdopteri 22.4 7.7E+02 0.017 24.4 11.2 56 222-288 87-148 (339)
248 cd01967 Nitrogenase_MoFe_alpha 22.3 7.9E+02 0.017 24.5 11.3 81 188-288 297-380 (406)
249 PRK13938 phosphoheptose isomer 22.3 6E+02 0.013 23.1 9.9 31 221-253 133-163 (196)
250 cd00755 YgdL_like Family of ac 22.1 6.5E+02 0.014 23.5 9.3 64 221-295 71-142 (231)
251 PF01113 DapB_N: Dihydrodipico 22.0 4.6E+02 0.0099 21.7 7.8 95 171-291 2-101 (124)
252 COG1759 5-formaminoimidazole-4 22.0 80 0.0017 31.4 2.9 93 168-287 17-115 (361)
253 PRK15490 Vi polysaccharide bio 21.8 6.4E+02 0.014 27.2 9.8 34 202-236 205-238 (578)
254 PRK07765 para-aminobenzoate sy 21.7 4.9E+02 0.011 23.9 8.1 79 204-291 2-86 (214)
255 COG2086 FixA Electron transfer 21.5 5.7E+02 0.012 24.6 8.6 91 170-292 58-149 (260)
256 PRK12738 kbaY tagatose-bisphos 21.5 1.5E+02 0.0032 28.9 4.7 98 186-286 28-133 (286)
257 PRK10886 DnaA initiator-associ 21.5 6.2E+02 0.013 23.0 14.6 37 246-289 108-144 (196)
258 PF01175 Urocanase: Urocanase; 21.4 6E+02 0.013 27.0 9.2 38 85-122 208-246 (546)
259 PLN02509 cystathionine beta-ly 21.3 8.5E+02 0.018 25.3 10.6 85 190-286 161-252 (464)
260 TIGR01777 yfcH conserved hypot 21.3 3.3E+02 0.0071 25.1 7.0 37 246-282 56-102 (292)
261 PRK08134 O-acetylhomoserine am 21.1 9E+02 0.02 24.7 10.9 87 192-287 95-185 (433)
262 TIGR01329 cysta_beta_ly_E cyst 21.0 8.3E+02 0.018 24.3 11.4 84 196-288 81-168 (378)
263 cd05710 SIS_1 A subgroup of th 21.0 4.2E+02 0.009 21.6 6.8 60 224-290 21-83 (120)
264 PF14359 DUF4406: Domain of un 20.8 55 0.0012 26.2 1.3 40 246-285 51-90 (92)
265 PRK12388 fructose-1,6-bisphosp 20.8 1.7E+02 0.0037 29.0 4.8 45 195-243 145-192 (321)
266 TIGR03458 YgfH_subfam succinat 20.8 9.9E+02 0.022 25.1 12.0 66 222-288 87-156 (485)
267 PF01975 SurE: Survival protei 20.7 87 0.0019 28.7 2.8 47 246-292 90-136 (196)
268 cd00578 L-fuc_L-ara-isomerases 20.6 9.2E+02 0.02 24.6 11.4 93 187-287 75-194 (452)
269 PRK02261 methylaspartate mutas 20.6 4.6E+02 0.0099 22.4 7.1 78 207-288 10-92 (137)
270 PRK10481 hypothetical protein; 20.6 6.3E+02 0.014 23.7 8.5 106 170-286 92-211 (224)
271 TIGR00514 accC acetyl-CoA carb 20.5 2.6E+02 0.0057 28.5 6.6 30 171-210 4-33 (449)
272 PRK07998 gatY putative fructos 20.5 1.9E+02 0.0042 28.1 5.2 94 186-284 28-131 (283)
273 cd00609 AAT_like Aspartate ami 20.5 5.4E+02 0.012 24.1 8.5 88 191-287 74-171 (350)
274 TIGR02113 coaC_strep phosphopa 20.5 89 0.0019 28.1 2.7 97 190-287 17-118 (177)
275 PRK11778 putative inner membra 20.2 8.7E+02 0.019 24.2 12.6 82 204-292 125-219 (330)
276 PF02302 PTS_IIB: PTS system, 20.2 3.9E+02 0.0085 20.2 6.2 33 224-258 24-58 (90)
277 PRK00414 gmhA phosphoheptose i 20.2 6.4E+02 0.014 22.6 10.6 31 221-253 131-161 (192)
278 COG0031 CysK Cysteine synthase 20.2 7.6E+02 0.016 24.3 9.3 43 79-121 93-135 (300)
279 PRK00451 glycine dehydrogenase 20.1 5.9E+02 0.013 25.7 9.1 78 202-287 154-239 (447)
280 COG2014 Uncharacterized conser 20.0 7.5E+02 0.016 23.4 9.3 72 201-296 134-205 (250)
No 1
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.2e-102 Score=732.57 Aligned_cols=333 Identities=51% Similarity=0.754 Sum_probs=320.5
Q ss_pred CceeEEEeCC-eEEEEecCCCCCeEEEEEecChHHHHHHHHhccccCcHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHH
Q 017293 12 SLQSICYRRG-SLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFL 90 (374)
Q Consensus 12 ~~~~i~~~~~-~l~ilDQ~~lP~e~~~~~~~~~~~v~~aI~~m~VrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l 90 (374)
++++|+|+++ +|.|||||+||++++|++|+++++++.|||+|+|||||+||++|+||+++++++.. ...+.+|+.+.+
T Consensus 2 ~~~~i~w~~~~~v~llDQr~LP~e~~~v~~~~~~dva~AIk~M~VRGAPAIgv~AayG~alaa~~~~-~~~~~~e~~~~l 80 (346)
T COG0182 2 KLRPIEWKDDGSVKLLDQRLLPFEEKYVECKTYEDVAEAIKDMVVRGAPAIGVAAAYGLALAARESK-NDSKGEEFIEAL 80 (346)
T ss_pred CceeEEEcCCCeEEEEecccCCceEEEEEeccHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHhcc-cccchHHHHHHH
Confidence 5899999888 79999999999999999999999999999999999999999999999999999862 123468999999
Q ss_pred HHHHHHHHhCCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCc
Q 017293 91 GNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKF 170 (374)
Q Consensus 91 ~~~~~~L~~~RPt~v~l~nai~~~~~~i~~~~~~~~~~~e~~~~l~~~~~~~~~e~~~a~~~I~~~~~~~i~~~~~~~~~ 170 (374)
.++.+.|.++|||++||+|++++|++...+.. +.++.+..+.+++.++.+|+...|.+|+++|+++|. +++
T Consensus 81 e~a~~~l~~tRPTAvNLfwal~rm~~~~~~~~----~v~~~~~~~~~eA~~i~~ED~e~n~~iG~~G~~ll~-----~~~ 151 (346)
T COG0182 81 EKAAETLKSTRPTAVNLFWALDRMLNAAKEAI----EVKEPKESILQEAEEIAEEDLEANRAIGENGAELLP-----DGD 151 (346)
T ss_pred HHHHHHHhhcCchhHHHHHHHHHHHHHHhhcc----chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----cCC
Confidence 99999999999999999999999999887652 478899999999999999999999999999999999 899
Q ss_pred EEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCCCCE
Q 017293 171 SVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSA 250 (374)
Q Consensus 171 ~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~vd~ 250 (374)
+||||||+|+|||+||||+++++|.||++||..+||++||||++||+|||+|||.+.|||+|+|+|||+|++|+++.||+
T Consensus 152 ~VLThCNaGaLAt~~~GTAlgviR~a~~~gk~i~v~a~ETRP~lQGARLTawEL~~~GIpvtLItD~aag~~M~~g~Id~ 231 (346)
T COG0182 152 TVLTHCNAGALATVGYGTALGVIRSAHEEGKDIRVFADETRPYLQGARLTAWELVQDGIPVTLITDNAAGHLMQQGMIDA 231 (346)
T ss_pred eEEeeecCCceeecCccchHHHHHHHHHCCCeeEEEeCCCccccccceeeHHHHhhcCCceEEEeccHHHHHHHhCCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCccccCCCce
Q 017293 251 VIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGIS 330 (374)
Q Consensus 251 VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~K~~~~~~~~~~i~ie~r~~~ev~~~~~~~~~~~~~~~~~ 330 (374)
|+||||||+.||+++||||||++|++||+|||||||++|.++||+...+|++|+||+|||+||..++ |.+++|++++
T Consensus 232 viVGADRI~~nGdvaNKIGTY~lAvlAk~~gIPFyVaAP~sTiD~~~~~G~~I~IEER~p~Ev~~v~---g~riap~~v~ 308 (346)
T COG0182 232 VIVGADRIAANGDVANKIGTYQLAVLAKHHGIPFYVAAPLSTIDFELKSGEDIPIEERDPEEVLEVG---GVRIAPEGVE 308 (346)
T ss_pred EEEccceeecCCcchhhhhHHHHHHHHHHcCCCeEEEcccCccccccCCCCccceeecCHHHeEeec---cEEeCCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 7889999999
Q ss_pred eecceeeecCCCCccEEEeCCCCcccCC
Q 017293 331 VWNPAFDVTPANLITGIITEKQGVVTKA 358 (374)
Q Consensus 331 v~np~fD~tP~~lIt~iITE~~Gi~~p~ 358 (374)
++||+||+|||+|||+||||+ |++.|+
T Consensus 309 ~yNPAFDvTP~~lItgIITEk-Gv~~p~ 335 (346)
T COG0182 309 AYNPAFDVTPPELITGIITEK-GVFTPP 335 (346)
T ss_pred ccCccccCChHHhcceeeecc-ceecCc
Confidence 999999999999999999999 999998
No 2
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=100.00 E-value=5.8e-95 Score=710.22 Aligned_cols=341 Identities=47% Similarity=0.706 Sum_probs=321.3
Q ss_pred ceeEEEeCCeEEEEecCCCCCeEEEEEecChHHHHHHHHhccccCcHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHH
Q 017293 13 LQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFLGN 92 (374)
Q Consensus 13 ~~~i~~~~~~l~ilDQ~~lP~e~~~~~~~~~~~v~~aI~~m~VrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l~~ 92 (374)
+++|.|+++.|.|||||+||++++|++|++++|++++|++|+|||||+||++|++||+++++++ ...+..++.+.|++
T Consensus 3 ~~~~~~~~~~l~~ldq~~lP~~~~~~~~~~~~~v~~aI~~m~vrGApaig~aaa~~lal~~~~~--~~~~~~~~~~~l~~ 80 (344)
T PRK05720 3 PRPVAWKDGAVRILDQRKLPHEVEYVELTTAEEVADAIRDMVVRGAPAIGIAAAYGMALAARED--ASDDGEEFLKKLEE 80 (344)
T ss_pred cceEEEeCCEEEEEecCCCCCeeEEEEeCCHHHHHHHHHhCeecCCcHHHHHHHHHHHHHHhhc--cCCCHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999999999999875 23467899999999
Q ss_pred HHHHHHhCCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCcEE
Q 017293 93 KLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSV 172 (374)
Q Consensus 93 ~~~~L~~~RPt~v~l~nai~~~~~~i~~~~~~~~~~~e~~~~l~~~~~~~~~e~~~a~~~I~~~~~~~i~~~~~~~~~~I 172 (374)
++++|.++|||++||.|+++++++.+... +.++.++.+++.+++|++|+..++++|+++|+++|. +|++|
T Consensus 81 ~~~~L~~~RPtavnL~~ai~~~~~~i~~~-----~~~~~~~~l~~~a~~~~~e~~~~~~~I~~~g~~~I~-----~g~~I 150 (344)
T PRK05720 81 AAAYLAASRPTAVNLFWALDRMREVLAPL-----PGAERKAALEEEAIEIHEEDVEINRAIGEHGLTLIR-----KGQGI 150 (344)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----CCCEE
Confidence 99999999999999999999999887542 578999999999999999999999999999999999 89999
Q ss_pred EEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCCCCEEE
Q 017293 173 LTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVI 252 (374)
Q Consensus 173 LT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~vd~Vl 252 (374)
|||||||+|+|+||||++++|+.|+++|++|+|||+||||++||.++|+|+|.+.|||||+|+|+|++++|++++||+|+
T Consensus 151 LThc~sg~lat~~~gTal~~i~~A~~~gk~~~V~v~EsRP~~qG~~lta~eL~~~GI~vtlI~Dsa~~~~M~~~~vd~Vi 230 (344)
T PRK05720 151 LTHCNAGWLATAGYGTALAPIYAAKEKGIDIHVYADETRPRLQGARLTAWELYQAGIDVTVITDNMAAHLMQTGKIDAVI 230 (344)
T ss_pred EEecCCCcceecchhHHHHHHHHHHHcCCceEEEEcCCCChhhhHHHHHHHHHHCCCCEEEEcccHHHHHhcccCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999777899999
Q ss_pred EcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCccccCCCceee
Q 017293 253 VGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVW 332 (374)
Q Consensus 253 vGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~K~~~~~~~~~~i~ie~r~~~ev~~~~~~~~~~~~~~~~~v~ 332 (374)
+|||+|++||+++||+|||++|++||+|+|||||+||+|||++..+.|+++++|+|+|+|+..++ |.+..+++++++
T Consensus 231 vGAd~I~~nG~v~NkiGT~~lAl~Ak~~~vPfyV~a~~~kfd~~~~~g~~i~iE~r~~~ev~~~~---~~~~~~~~v~v~ 307 (344)
T PRK05720 231 VGADRIAANGDVANKIGTYQLAIAAKYHGVPFYVAAPSSTIDLTLADGKEIPIEERDPEEVTEVG---GVRIAPEGVKVY 307 (344)
T ss_pred EcccEEecCCCEeehhhHHHHHHHHHHhCCCEEEeccccccCcCCCCCcccccccCCHHHhcccC---CcccCCCCceee
Confidence 99999999999999999999999999999999999999999999999999999999999998876 555677899999
Q ss_pred cceeeecCCCCccEEEeCCCCcccCCCcCccccHHHHHhh
Q 017293 333 NPAFDVTPANLITGIITEKQGVVTKAGADDAFDIKDFIQK 372 (374)
Q Consensus 333 np~fD~tP~~lIt~iITE~~Gi~~p~~~~~~~~~~~~~~~ 372 (374)
||+||+|||+|||+||||+ |+++|+.. .++.+++..
T Consensus 308 Np~FDvTP~~lIt~iITE~-Gv~~p~~~---~~~~~~~~~ 343 (344)
T PRK05720 308 NPAFDVTPAELITGIITEK-GIVAPPDT---ANLAALFPE 343 (344)
T ss_pred cccccCCCHHHCCEEEcCC-CccCccHH---HHHHHHhcc
Confidence 9999999999999999999 99999833 467777654
No 3
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=100.00 E-value=1.6e-94 Score=704.77 Aligned_cols=342 Identities=43% Similarity=0.650 Sum_probs=318.4
Q ss_pred ceeEEEeCCeEEEEecCCCCCeEEEEEecChHHHHHHHHhccccCcHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHH
Q 017293 13 LQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFLGN 92 (374)
Q Consensus 13 ~~~i~~~~~~l~ilDQ~~lP~e~~~~~~~~~~~v~~aI~~m~VrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l~~ 92 (374)
+++|+|+++.|+|||||+||++++|++|++++|+++||++|+|||||+||++|++||+++++++ ...+..++++.|++
T Consensus 14 ~~~i~~~~~~l~ilDQ~~lP~~~~~~~~~~~~~v~~aI~~M~vRGApaIgvaAa~glal~~~~~--~~~~~~~~~~~l~~ 91 (356)
T PRK08334 14 PRSVEYEEGKVYMIDQRLLPREFKVIELRTVEEVAEAIKTMTVRGAPAIGAAAAFGLALYAETS--KAKTKDEFMDGFYK 91 (356)
T ss_pred CccEEEcCCEEEEEecCCCCCeEEEEEeCCHHHHHHHHHhCcccCcHHHHHHHHHHHHHHHHhc--ccCCHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999999999999999999999875 23467899999999
Q ss_pred HHHHHHhCCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCcEE
Q 017293 93 KLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSV 172 (374)
Q Consensus 93 ~~~~L~~~RPt~v~l~nai~~~~~~i~~~~~~~~~~~e~~~~l~~~~~~~~~e~~~a~~~I~~~~~~~i~~~~~~~~~~I 172 (374)
..++|.++|||++||.|++++|++.+.... ..+.+++++.+++.++.|.+++.+++++|+++|+++|. +|+ |
T Consensus 92 ~~~~L~~~RPTavnL~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~a~~i~~~d~~~~~~Ig~~g~~li~-----dg~-I 163 (356)
T PRK08334 92 AYETLKNTRPTAVNLFWALNRIKKLVEEHL--EDPLDEIKRLIVEEAQKIADEDVEANLRMGHYGAEVLP-----EGN-V 163 (356)
T ss_pred HHHHHHHcCCcHHhHHHHHHHHHHHHHhhc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCC-E
Confidence 999999999999999999999998876431 25788999999999999999999999999999999999 788 9
Q ss_pred EEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCCCCEEE
Q 017293 173 LTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVI 252 (374)
Q Consensus 173 LT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~vd~Vl 252 (374)
|||||+|+|||+|||||+++|+.|+++|+.++|||+||||++||++|++|+|.+.|||||+|+|||++|+|++++||+||
T Consensus 164 LTHcnaG~LAt~~~gTal~vi~~A~~~gk~~~V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~Dsav~~~M~~~~Vd~Vi 243 (356)
T PRK08334 164 LTHCNAGSLATVHLGTVGAVLRVMHKDGTLKLLWVDETRPVLQGARLSAWEYHYDGIPLKLISDNMAGFVMQQGKVDAII 243 (356)
T ss_pred EEecCcchhhhcccchHHHHHHHHHHcCCeEEEEECCCCchhhHHHHHHHHHHHCCCCEEEEehhHHHHHhhhcCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999777999999
Q ss_pred EcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCccccCCCceee
Q 017293 253 VGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVW 332 (374)
Q Consensus 253 vGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~K~~~~~~~~~~i~ie~r~~~ev~~~~~~~~~~~~~~~~~v~ 332 (374)
+|||+|++||+++||+|||++|++||+|||||||+||++|||+..++++++++|+|+|+|+..++ |.... ++++++
T Consensus 244 vGAd~I~~nG~v~NKiGTy~lA~~Ak~~~vPfyV~Ap~~t~d~~~~~~~~i~iE~r~~~ev~~~~---~~~~~-~~~~v~ 319 (356)
T PRK08334 244 VGADRIVANGDFANKIGTYTLAVLAKEHGIPFFTVAPLSTIDMSLKSGKEIPIEERSPEEVLTCG---GCRIA-PDVDVY 319 (356)
T ss_pred ECccEEecCCCEeehhhHHHHHHHHHHhCCCEEEEcccCccCCCCCCCcccccccCChHHheecc---CcccC-CCccee
Confidence 99999999999999999999999999999999999999999999888999999999999999875 33333 489999
Q ss_pred cceeeecCCCCccEEEeCCCCcccCCCcCccccHHHHHhh
Q 017293 333 NPAFDVTPANLITGIITEKQGVVTKAGADDAFDIKDFIQK 372 (374)
Q Consensus 333 np~fD~tP~~lIt~iITE~~Gi~~p~~~~~~~~~~~~~~~ 372 (374)
||+||+|||+|||+||||+ |+++|+ +. -++++++..
T Consensus 320 NPaFDvTPp~lIt~iITE~-Gv~~P~-~~--~~~~~~~~~ 355 (356)
T PRK08334 320 NPAFDVTPHKYLTGIITDR-GVVWPP-FE--RNLKKLFEE 355 (356)
T ss_pred cccccCCCHHHCCEEEcCC-CccCCc-hH--HHHHHHhcc
Confidence 9999999999999999999 999998 32 256777654
No 4
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=100.00 E-value=1.5e-94 Score=702.65 Aligned_cols=327 Identities=57% Similarity=0.841 Sum_probs=312.3
Q ss_pred eeEEEeCCeEEEEecCCCCCeEEEEEecChHHHHHHHHhccccCcHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHH
Q 017293 14 QSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFLGNK 93 (374)
Q Consensus 14 ~~i~~~~~~l~ilDQ~~lP~e~~~~~~~~~~~v~~aI~~m~VrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l~~~ 93 (374)
++|+|+++.|+|||||+||+|++|++|++++|++++||+|+|||||+||++||+||++++++. .+..++.+.|+++
T Consensus 1 ~~i~~~~~~l~~ldq~~lP~~~~~~~~~~~~~~~~aI~~m~vRGApaig~~aa~~~~l~~~~~----~~~~~~~~~l~~~ 76 (331)
T TIGR00512 1 RAIKWNRGSLELLDQRLLPHESEYIEVTTVEDVADAIRDMRVRGAPAIGIVAAYGLALAAREA----DEREEFKALLEEK 76 (331)
T ss_pred CCEEEeCCEEEEEecCCCCCeeEEEEeCCHHHHHHHHHhCcccCchHHHHHHHHHHHHHHhhc----CCHHHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999999999999999998874 3678999999999
Q ss_pred HHHHHhCCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCc---
Q 017293 94 LEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKF--- 170 (374)
Q Consensus 94 ~~~L~~~RPt~v~l~nai~~~~~~i~~~~~~~~~~~e~~~~l~~~~~~~~~e~~~a~~~I~~~~~~~i~~~~~~~~~--- 170 (374)
+++|.++|||++||+|++++|++.+... .+.+++++.+++.+++|++|+..++++|+++|+++|. +|+
T Consensus 77 ~~~L~~~RPtavnL~~A~~~~~~~i~~~----~~~~~~k~~l~e~a~~~~~e~~~~~~~I~~~g~~~I~-----dg~~~~ 147 (331)
T TIGR00512 77 LQYLVSSRPTAVNLSWALDRMRAALEAA----KTVADIKEALLAEAERILEEDLEDNRAIGENGAALIK-----KGVAAP 147 (331)
T ss_pred HHHHHHhCCcHhhHHHHHHHHHHHHhcc----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCCCC
Confidence 9999999999999999999999887652 4788999999999999999999999999999999999 899
Q ss_pred -EEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCCCC
Q 017293 171 -SVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVS 249 (374)
Q Consensus 171 -~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~vd 249 (374)
+||||||||+|||+|||||+++|+.|+++|++|+|||+||||++||.++++++|.+.|||||+|+||+++|+|++++||
T Consensus 148 ~~ILThcnsg~lat~~~gtal~~l~~A~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsav~~~m~~~~vd 227 (331)
T TIGR00512 148 LRVLTHCNTGSLATAGYGTALGVIRSAHEKGRLEHVYADETRPRLQGARLTAWELVQEGIPATLITDSMAAHLMKHGEVD 227 (331)
T ss_pred ceEEeecCCccccccccchHHHHHHHHHHcCCceEEEECCCCchhhHHHHHHHHHHHCCCCEEEEcccHHHHHhcccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999666999
Q ss_pred EEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCccccCCCc
Q 017293 250 AVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGI 329 (374)
Q Consensus 250 ~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~K~~~~~~~~~~i~ie~r~~~ev~~~~~~~~~~~~~~~~ 329 (374)
+|++|||+|++||+++||+|||++|++||+|||||||+||+||||+..+.+.++++|+|+|+|+..+. |.+..++++
T Consensus 228 ~VivGAd~v~~nG~v~nkiGT~~lA~~Ak~~~vPfyV~a~~~kfd~~~~~~~~i~iE~r~p~ev~~~~---g~~~~~~~~ 304 (331)
T TIGR00512 228 AVIVGADRIAANGDTANKIGTYQLAVLAKHHGVPFYVAAPTSTIDLETKDGAEIPIEERPPEEVTHVG---GVRIAPPGI 304 (331)
T ss_pred EEEEcccEEecCCCEeehhhHHHHHHHHHHhCCCEEEeccccccccCCCCccccccccCCHHHhcccC---CcccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999998775 556678899
Q ss_pred eeecceeeecCCCCccEEEeCCCCcccC
Q 017293 330 SVWNPAFDVTPANLITGIITEKQGVVTK 357 (374)
Q Consensus 330 ~v~np~fD~tP~~lIt~iITE~~Gi~~p 357 (374)
+++||+||+|||+|||+||||+ |+++|
T Consensus 305 ~v~Np~FD~TP~~lIt~iITe~-Gv~~p 331 (331)
T TIGR00512 305 DVWNPAFDVTPAELITGIITEK-GVITP 331 (331)
T ss_pred eeecccccCCCHHHCCEEEccC-CccCC
Confidence 9999999999999999999999 99987
No 5
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=100.00 E-value=2e-94 Score=707.35 Aligned_cols=345 Identities=37% Similarity=0.557 Sum_probs=321.8
Q ss_pred CceeEEEeCCeEEEEecCCCCCeEEEEEecChHHHHHHHHhccccCcHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHH
Q 017293 12 SLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFLG 91 (374)
Q Consensus 12 ~~~~i~~~~~~l~ilDQ~~lP~e~~~~~~~~~~~v~~aI~~m~VrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l~ 91 (374)
++++|+|+++.|+|||||+||++++|++|++++|+++||++|+|||||+||++|++||++++++. ...+.+++.+.|+
T Consensus 15 ~~~~i~~~~~~l~~lDq~~lP~~~~~~~~~~~~~v~~aI~~M~vRGApaigiaAa~glal~~~~~--~~~~~~~~~~~l~ 92 (363)
T PRK05772 15 KLLPIIWKDNTLTLLDQSLLPFETVYVDLKTVEEVALAIRNMQVRGAPAIGITAGYGMVLALIEN--NVKTLDDAIRELT 92 (363)
T ss_pred CCceEEecCCEEEEEecCCCCCeEEEEEeCCHHHHHHHHHhCcccCCcHHHHHHHHHHHHHHHhc--cCCCHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999885 2347789999999
Q ss_pred HHHHHHHhCCCCcccHHHHHHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCC
Q 017293 92 NKLEYLVSSRPTAVNLSDAAAKLKEIISKAAA--TASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSK 169 (374)
Q Consensus 92 ~~~~~L~~~RPt~v~l~nai~~~~~~i~~~~~--~~~~~~e~~~~l~~~~~~~~~e~~~a~~~I~~~~~~~i~~~~~~~~ 169 (374)
+..++|.++|||++||.|++++|++.+..... ...+.+++++.+.+.++.+++++..++++|+++|+++|. +|
T Consensus 93 ~~~~~L~~aRPTaVnL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~A~~i~~ed~~~~~~I~~~g~~~I~-----dg 167 (363)
T PRK05772 93 RAKTILDSARPTAVNLVWATSRMLNKAKNTVESGNAKSVNELIELLKVEAKKIFEEEYDAEIQMGLYGLEKLN-----DG 167 (363)
T ss_pred HHHHHHHhcCCcHHhHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CC
Confidence 99999999999999999999999998875432 124789999999999999999999999999999999999 89
Q ss_pred cEEEEecCCCcccc-cccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCCC
Q 017293 170 FSVLTHCNTGSLAT-AGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRV 248 (374)
Q Consensus 170 ~~ILT~~~sg~lat-~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~v 248 (374)
++||||||||+||| +||||++++|+.|+++|++|+|||+||||++||.|||+|+|.+.|||||+|+|||++|+|++++|
T Consensus 168 ~~ILThcnsg~Lat~~g~gtal~~i~~a~~~gk~f~V~v~EsRP~~qG~rlta~eL~~~GIpvtlI~Dsa~~~~m~~~~V 247 (363)
T PRK05772 168 DTVLTQCNAGGLATGTGLGTALAPVKLAKALGMSVSVIAPETRPWLQGSRLTVYELMEEGIKVTLITDTAVGLVMYKDMV 247 (363)
T ss_pred CEEEEecCCcchhhccccccHHHHHHHHHHCCCeEEEEECCCCccchhHHHHHHHHHHCCCCEEEEehhHHHHHHhhcCC
Confidence 99999999999999 99999999999999999999999999999999999999999999999999999999999987789
Q ss_pred CEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCccccCCC
Q 017293 249 SAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASG 328 (374)
Q Consensus 249 d~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~K~~~~~~~~~~i~ie~r~~~ev~~~~~~~~~~~~~~~ 328 (374)
|+||+|||+|++||+++||+|||++|++||+|||||||+||++|||+..+. +++++|+|+|+|+.... |.+..+++
T Consensus 248 d~VivGAD~I~~NG~v~NKiGTy~lA~~Ak~~~vPfyV~ap~~k~d~~~~~-~~i~ieer~p~ev~~~~---~~~~~~~~ 323 (363)
T PRK05772 248 NNVMVGADRILRDGHVFNKIGTFKEAVIAHELGIPFYALAPTSTFDLKSDV-NDVKIEERDPNEVRTIR---GVPITPED 323 (363)
T ss_pred CEEEECccEEecCCCEeehhhhHHHHHHHHHhCCCEEEEccccccCccccc-cccccccCCHHHhcccC---CceecCCC
Confidence 999999999999999999999999999999999999999999999999877 78999999999998776 55667889
Q ss_pred ceeecceeeecCCCCccEEEeCCCCcccCCCcCccccHHHHHh
Q 017293 329 ISVWNPAFDVTPANLITGIITEKQGVVTKAGADDAFDIKDFIQ 371 (374)
Q Consensus 329 ~~v~np~fD~tP~~lIt~iITE~~Gi~~p~~~~~~~~~~~~~~ 371 (374)
++++||+||+|||+|||+||||+ |+++|+. . .+++++++
T Consensus 324 ~~v~Np~FDvTP~~lIt~iITE~-Gv~~p~~-~--~~~~~~~~ 362 (363)
T PRK05772 324 VNVYNPVFDVTPPKYITGIITEK-GIIYPPF-H--KNIRKILE 362 (363)
T ss_pred ceeeccCccCCCHHHCCEEEccC-CccCCch-H--HHHHHHhc
Confidence 99999999999999999999999 9999983 2 35666653
No 6
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=100.00 E-value=2.9e-93 Score=695.68 Aligned_cols=332 Identities=41% Similarity=0.573 Sum_probs=312.2
Q ss_pred ceeEEEeC--CeEEEEecCCCCCeEEEEEecChHHHHHHHHhccccCcHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHH
Q 017293 13 LQSICYRR--GSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFL 90 (374)
Q Consensus 13 ~~~i~~~~--~~l~ilDQ~~lP~e~~~~~~~~~~~v~~aI~~m~VrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l 90 (374)
+++|+|++ +.|.|||||+||++++|++|++++++++|||+|+|||||+||++||+||+++++++ ...+.+++.+.|
T Consensus 1 ~~~i~~~~~~~~l~~ldq~~lP~~~~~~~~~~~~~v~~aI~~m~vRGApaig~aaa~g~~l~~~~~--~~~~~~~~~~~l 78 (339)
T PRK06036 1 MRTIDWNDESNSVKLIDQTLLPEEYKVIECKTLESLCEAIKSLRVRGAPALGAAGGYGIALAARLS--KAKDVDELLKDL 78 (339)
T ss_pred CCcEEEcCCCCeEEEEEcCCCCCeEEEEEeCCHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhc--ccCCHHHHHHHH
Confidence 47899988 99999999999999999999999999999999999999999999999999999875 345788999999
Q ss_pred HHHHHHHHhCCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCc
Q 017293 91 GNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKF 170 (374)
Q Consensus 91 ~~~~~~L~~~RPt~v~l~nai~~~~~~i~~~~~~~~~~~e~~~~l~~~~~~~~~e~~~a~~~I~~~~~~~i~~~~~~~~~ 170 (374)
++++++|.++|||++||.|+++++++.+.+ ..+.+++++.+++.++++++++.+++++|+++|+++|. +|+
T Consensus 79 ~~~~~~L~~aRPTavnL~~a~~r~~~~~~~----~~~~~~~~~~~~e~a~~~~~e~~~~~~~I~~~g~~~I~-----~g~ 149 (339)
T PRK06036 79 KVAAETLKSTRPTAVNLSWGVDRVLKAALD----AEDVEEIRDIALREAERIAEEDVARNKLIGKHGAKLLE-----DGD 149 (339)
T ss_pred HHHHHHHHHhCCcHhhHHHHHHHHHHHhhc----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----CCC
Confidence 999999999999999999999998875543 24788999999999999999999999999999999999 899
Q ss_pred EEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCCCCE
Q 017293 171 SVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSA 250 (374)
Q Consensus 171 ~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~vd~ 250 (374)
+||||||||+|||+||||++++|+.|+++|++|+|||+||||++||.|||+|+|.+.|||||+|+|||++|+|++++||+
T Consensus 150 ~ILThc~sg~lat~~~gTal~~l~~A~~~gk~~~V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~M~~~~Vd~ 229 (339)
T PRK06036 150 TVLTHCNAGRLACVDWGTALGVIRSAVEQGKEIKVIACETRPLNQGSRLTTWELMQDNIPVTLITDSMAGIVMRQGMVDK 229 (339)
T ss_pred EEEEecCCccccccccchHHHHHHHHHHcCCceEEEEcCCCchhhHHHHHHHHHHHcCCCEEEEehhHHHHHhccCCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997777999
Q ss_pred EEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCccccCCCce
Q 017293 251 VIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGIS 330 (374)
Q Consensus 251 VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~K~~~~~~~~~~i~ie~r~~~ev~~~~~~~~~~~~~~~~~ 330 (374)
||+|||+|++|| ++||+|||++|++||+|||||||+||++|||+....| ++++|+|+|+|+.... |....+++++
T Consensus 230 VivGAd~I~anG-v~NKiGT~~lA~~Ak~~~vPfyV~ap~s~~d~~~~~g-~i~iE~r~~~Ev~~~~---~~~~~~~~v~ 304 (339)
T PRK06036 230 VIVGADRITRDA-VFNKIGTYTHSVLAKEHEIPFYVAAPLSTFDFEGWEG-SVKIEERDPDELRYCG---KTQIAPKDVP 304 (339)
T ss_pred EEECccchhhcC-eehhhhHHHHHHHHHHhCCCEEEEeecCccCCCcCCC-CcccccCCHHHhcccc---CcccCCCCce
Confidence 999999999997 9999999999999999999999999999999987777 7999999999998876 4456688999
Q ss_pred eecceeeecCCCCccEEEeCCCCcccCCCcC
Q 017293 331 VWNPAFDVTPANLITGIITEKQGVVTKAGAD 361 (374)
Q Consensus 331 v~np~fD~tP~~lIt~iITE~~Gi~~p~~~~ 361 (374)
++||+||+|||+|||+||||+ |+++|+..+
T Consensus 305 v~Np~FDvTP~~lIt~iITE~-Gv~~P~~~~ 334 (339)
T PRK06036 305 VYNPAFDATPMENVTAIITEK-GVFYPPFLL 334 (339)
T ss_pred eeCcccccCCHHHCCEEEccC-CcccCCccc
Confidence 999999999999999999999 999998554
No 7
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=100.00 E-value=1.2e-90 Score=672.82 Aligned_cols=316 Identities=42% Similarity=0.622 Sum_probs=294.1
Q ss_pred CCCceeEEEeCCeEEEEecCCCCCeEEEEEecChHHHHHHHHhccccCcHHHHHHHHHHHHHHHhhccCCCCCHHHHHHH
Q 017293 10 NNSLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASF 89 (374)
Q Consensus 10 ~~~~~~i~~~~~~l~ilDQ~~lP~e~~~~~~~~~~~v~~aI~~m~VrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~ 89 (374)
--++++|+|+++.|+|||||+||++++|++|++++|++++|++|+|||||+||++|++||++++++. +.
T Consensus 9 ~~~~~~~~~~~~~l~~lDq~~lP~~~~~~~~~~~~~~~~aI~~m~vRGAp~ig~~aa~g~~l~~~~~-----------~~ 77 (329)
T PRK06371 9 TKTLKAVWYEDGEVKLIDQRKLPDKIEIFEAKNSDDVAYAIKNMVVRGAPAIGVTAAYGLAMASKNG-----------EN 77 (329)
T ss_pred eeeEEEEEEeCCEEEEEecCCCCCeEEEEEeCCHHHHHHHHHhCeecChHHHHHHHHHHHHHHHHhH-----------HH
Confidence 3468999999999999999999999999999999999999999999999999999999999987642 45
Q ss_pred HHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCC
Q 017293 90 LGNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSK 169 (374)
Q Consensus 90 l~~~~~~L~~~RPt~v~l~nai~~~~~~i~~~~~~~~~~~e~~~~l~~~~~~~~~e~~~a~~~I~~~~~~~i~~~~~~~~ 169 (374)
+.+.+++|.++|||++||+|++++|+... .+ ++.++++.+|++..+++|+++|+++|. +|
T Consensus 78 ~~~~~~~L~~~RPtavnL~~a~~~~~~~~-------~~--------~~~a~~~~~e~~~~~~~I~~~g~~~I~-----~g 137 (329)
T PRK06371 78 MDEAVEKIRSTRPTAYDLFKAIRYMNSNE-------FD--------MNAARRYAMEIIGRSKKIGEYGNELIK-----NG 137 (329)
T ss_pred HHHHHHHHHhcCcchhhHHHHHHHHHhhc-------Cc--------HHHHHHHHHHHHHHHHHHHHHHHHHcC-----CC
Confidence 88899999999999999999999986422 12 456777888899999999999999999 89
Q ss_pred cEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCCCC
Q 017293 170 FSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVS 249 (374)
Q Consensus 170 ~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~vd 249 (374)
++||||||||+++|+||||++++|+.|+++|++|+|||+||||++||.+||+|+|.+.|||||+|+|||++|+|++++||
T Consensus 138 ~~ILThcnsg~la~~~~gTal~~l~~A~~~gk~f~V~v~EsRP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~M~~~~Vd 217 (329)
T PRK06371 138 ARILTHCNAGALAVVDWGTALAPIRIAHRNGKNIFVFVDETRPRLQGARLTAWELAQEGIDHAIIADNAAGYFMRKKEID 217 (329)
T ss_pred CEEEEeCCCCcceeccchhHHHHHHHHHHcCCeeEEEECCCCCcchHHHHHHHHHHHCCCCEEEEcccHHHHHhhhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999777899
Q ss_pred EEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCccccCCCc
Q 017293 250 AVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGI 329 (374)
Q Consensus 250 ~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~K~~~~~~~~~~i~ie~r~~~ev~~~~~~~~~~~~~~~~ 329 (374)
+||+|||+|++||+++||+|||++|++||+|||||||+||+++|++....++++++|+|+|+|+..+. |....++++
T Consensus 218 ~VivGAd~I~aNG~v~NKiGT~~lAl~Ak~~~VPfyV~a~~~t~d~~~~~g~~i~iEer~~~ev~~~~---g~~~~p~~~ 294 (329)
T PRK06371 218 LVIVGADRIASNGDFANKIGTYEKAVLAKVNGIPFYVAAPGSTFDFSIKSGDEIPIEERDENEVLEIN---GCRIGPQES 294 (329)
T ss_pred EEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEeccccccCCCCCCcCccccccCCHHHeeccC---CeecCCCCc
Confidence 99999999999999999999999999999999999999999999988888888999999999998775 555678899
Q ss_pred eeecceeeecCCCCccEEEeCCCCcccCCCc
Q 017293 330 SVWNPAFDVTPANLITGIITEKQGVVTKAGA 360 (374)
Q Consensus 330 ~v~np~fD~tP~~lIt~iITE~~Gi~~p~~~ 360 (374)
+++||+||+|||+|||+||||+ |+++|+..
T Consensus 295 ~v~Np~FDvTP~elIt~iITE~-Gv~~p~~i 324 (329)
T PRK06371 295 HARNPAFDVTPNEYVTGFITEY-GIFKPNEL 324 (329)
T ss_pred cccCcCccCCCHHHCCEEEccC-CccChHHh
Confidence 9999999999999999999999 99999843
No 8
>KOG1468 consensus Predicted translation initiation factor related to eIF-2B alpha/beta/delta subunits (CIG2/IDI2) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.9e-91 Score=642.58 Aligned_cols=352 Identities=59% Similarity=0.872 Sum_probs=329.0
Q ss_pred CceeEEEeCCeEEEEecCCCCCeEEEEEecChHHHHHHHHhccccCcHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHH
Q 017293 12 SLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFLG 91 (374)
Q Consensus 12 ~~~~i~~~~~~l~ilDQ~~lP~e~~~~~~~~~~~v~~aI~~m~VrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l~ 91 (374)
+|++|+|++++|++|||++||+|+.|+.+++++|.|..|++|+|||||+|++.++++++..++.. ...+.+.+.+.+.
T Consensus 2 sL~aI~y~~~sl~vLDQllLP~e~kYi~v~~v~d~~~vIk~MqVRGAPaIAivg~Lslaveiq~~--~~~~~ds~~~~i~ 79 (354)
T KOG1468|consen 2 SLEAIKYDRGSLEVLDQLLLPYETKYIPVRGVSDAWAVIKSMQVRGAPAIAIVGSLSLAVEIQKK--GFPGSDSLKEFII 79 (354)
T ss_pred cceeEEecCchHhHHHHhhCcCceeEEEecchhHHHHHHHHHhhcCccHHHHHHHHHHHHHHhhc--cCCchHHHHHHHH
Confidence 58899999999999999999999999999999999999999999999999999999999998872 2345666889999
Q ss_pred HHHHHHHhCCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcC-CCc
Q 017293 92 NKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKN-SKF 170 (374)
Q Consensus 92 ~~~~~L~~~RPt~v~l~nai~~~~~~i~~~~~~~~~~~e~~~~l~~~~~~~~~e~~~a~~~I~~~~~~~i~~~~~~-~~~ 170 (374)
.-.++|.++|||+|||.|+.+.++..+.+.. .+....++.++++.++.++++...|+.|+.+|+++|.+.+.+ ++.
T Consensus 80 ~kl~fLvssRPTAVnl~~aa~~lk~i~~~~~---~~~~~~~~~~~~~~e~ml~~dl~~N~~ig~~g~~~Llq~~~~~~kl 156 (354)
T KOG1468|consen 80 NKLNFLVSSRPTAVNLANAANELKPIAASED---KSEKAKREKCISYTEDMLEKDLADNRAIGDNGAKELLQAVKDKGKL 156 (354)
T ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhcCCCCce
Confidence 9999999999999999999999999887763 344667889999999999999999999999999999887754 559
Q ss_pred EEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCCCCE
Q 017293 171 SVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSA 250 (374)
Q Consensus 171 ~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~vd~ 250 (374)
+||||||+|||||+||||+++++|.+|+.|+..+|||+||||++||.||||.||....||.|+|+|||+++.|+.++||.
T Consensus 157 tVlThCNTGSLATagyGTALGVIRsLh~~grLehvyctETRPyNQGsRLTA~ELvhekiPatLItDS~vA~~m~~~~vda 236 (354)
T KOG1468|consen 157 TVLTHCNTGSLATAGYGTALGVIRSLHSLGRLEHVYCTETRPYNQGSRLTAFELVHEKIPATLITDSMVAAAMKNHQVDA 236 (354)
T ss_pred EEEEeecCCchhhcccchHHHHHHHHHhcCCcceEEecccccCCcccchhhHHHHhccCcchhhhhHHHHHHHhcCCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999899999
Q ss_pred EEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCccccCCCce
Q 017293 251 VIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGIS 330 (374)
Q Consensus 251 VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~K~~~~~~~~~~i~ie~r~~~ev~~~~~~~~~~~~~~~~~ 330 (374)
|++|||+|..||+.+||||||++|++||||||||||++|...+|....+|++|.||+|+|.|++...|..|.+++++++.
T Consensus 237 vvvGADrVarNGDTANKIGTy~LAv~aKhhgipFyvaaP~tsid~~l~tG~eIiIEERp~~Em~~v~gg~~v~Iaapgi~ 316 (354)
T KOG1468|consen 237 VVVGADRVARNGDTANKIGTYQLAVLAKHHGIPFYVAAPFTSIDLSLATGDEIIIEERPPAEMTHVTGGEGVRIAAPGIN 316 (354)
T ss_pred EEEcccceeccCcchhhhhhhHHHHHHHhcCCceEEeccccccccccCCCCeeEEeecCchHheeecCCcceEecCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999987667889999999
Q ss_pred eecceeeecCCCCccEEEeCCCCcccCCCcCccccHHHHH
Q 017293 331 VWNPAFDVTPANLITGIITEKQGVVTKAGADDAFDIKDFI 370 (374)
Q Consensus 331 v~np~fD~tP~~lIt~iITE~~Gi~~p~~~~~~~~~~~~~ 370 (374)
||||+||+||++|||+||||+ |+|+|... +++.+++|+
T Consensus 317 vwnPAFDvTPa~LItgIiTe~-g~f~~~~~-~~~~~~s~~ 354 (354)
T KOG1468|consen 317 VWNPAFDVTPAELITGIITEK-GVFTPEEL-EEAILKSLF 354 (354)
T ss_pred ccCccccCCHHHHHHHHhhhc-cccChHHh-cchhhhhcC
Confidence 999999999999999999999 99999844 466666653
No 9
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=100.00 E-value=1.4e-81 Score=608.57 Aligned_cols=303 Identities=47% Similarity=0.693 Sum_probs=286.3
Q ss_pred ecChHHHHHHHHhccccCcHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHH
Q 017293 40 IRDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIIS 119 (374)
Q Consensus 40 ~~~~~~v~~aI~~m~VrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l~~~~~~L~~~RPt~v~l~nai~~~~~~i~ 119 (374)
|+++++++++||+|+|||||+||++|+++|+++++.+ .+.+.+|+.+.|+..+++|.++|||+++|.|+++++++.++
T Consensus 1 ~~~~~~~~~~I~~m~vrGa~~ia~aa~~~l~~~~~~~--~~~~~~e~~~~l~~~~~~L~~~RPt~v~l~na~~~~~~~i~ 78 (303)
T TIGR00524 1 CRTYEDVADAIKSMVVRGAPAIGVAAAYGLALAARKI--ETDNVEEFKEDLEKAADFLLSTRPTAVNLFWALERVLNSAE 78 (303)
T ss_pred CCCHHHHHHHHHhCeecChHHHHHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHh
Confidence 6799999999999999999999999999999998875 35678999999999999999999999999999999998875
Q ss_pred HHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHC
Q 017293 120 KAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSE 199 (374)
Q Consensus 120 ~~~~~~~~~~e~~~~l~~~~~~~~~e~~~a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~ 199 (374)
+ ..+.++.++.+++.+++|++++.+++++|+++|.++|. +|++||||||||+|||+||+||+++|+.|+++
T Consensus 79 ~----~~~~~~~k~~l~~~~~~~~~e~~~~~~~Ia~~a~~~I~-----~g~~ILT~~~Sg~lat~~~~tv~~~l~~A~~~ 149 (303)
T TIGR00524 79 N----GESVEEAKESLLREAIEIIEEDLETNRKIGENGAKLIK-----DGDTVLTHCNAGALATSDYGTALGVIRSAWED 149 (303)
T ss_pred c----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----CCCEEEEecCCccccccCcchHHHHHHHHHHc
Confidence 3 24788999999999999999999999999999999999 89999999999999999999999999999999
Q ss_pred CCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHh
Q 017293 200 GVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKF 279 (374)
Q Consensus 200 g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~ 279 (374)
|++|+|||+||||.+||.++++++|.+.|||||+|+|++++|+|++++||+|++|||+|++||+++||+|||++|++||+
T Consensus 150 g~~~~V~v~EsrP~~~G~~~~a~~L~~~gI~vtlI~Dsa~~~~m~~~~vd~VlvGAd~v~~nG~v~nk~GT~~lA~~Ak~ 229 (303)
T TIGR00524 150 GKRIRVIACETRPRNQGSRLTAWELMQDGIDVTLITDSMAAYFMQKGEIDAVIVGADRIARNGDVANKIGTYQLAVLAKE 229 (303)
T ss_pred CCceEEEECCCCCccchHHHHHHHHHHCCCCEEEEChhHHHHHccccCCCEEEEcccEEecCCCEeEhhhHHHHHHHHHH
Confidence 99999999999999999888999999999999999999999999545999999999999999999999999999999999
Q ss_pred cCCeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCccccCCCceeecceeeecCCCCccEEEeCCCCcccC
Q 017293 280 HNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKQGVVTK 357 (374)
Q Consensus 280 ~~vPvyV~a~~~K~~~~~~~~~~i~ie~r~~~ev~~~~~~~~~~~~~~~~~v~np~fD~tP~~lIt~iITE~~Gi~~p 357 (374)
|+|||||+||+|||++.++.|+++++|+|+|.|+...+ |....+++++++||+||+|||+|||+||||. |+++|
T Consensus 230 ~~vPv~V~a~s~K~~~~~~~g~~i~~e~~~~~ev~~~~---~~~~~~~~~~v~np~fD~TP~~lIt~iiTe~-Gv~~p 303 (303)
T TIGR00524 230 FRIPFFVAAPLSTFDTKTSCGEDIVIEERDPEEVAQVG---GVRIAPLGVKVYNPAFDITPHDLIDAIITEK-GIITP 303 (303)
T ss_pred hCCCEEEecccccccCCCCCccccccccCCHHHhcccc---CcccCCCCceeecccccCCCHHHCCEEEcCC-CccCc
Confidence 99999999999999999999999999999999998765 4445678999999999999999999999999 99987
No 10
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=100.00 E-value=6.2e-76 Score=569.61 Aligned_cols=299 Identities=36% Similarity=0.464 Sum_probs=277.7
Q ss_pred ChHHHHHHHHhccccCcHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHH
Q 017293 42 DSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKA 121 (374)
Q Consensus 42 ~~~~v~~aI~~m~VrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l~~~~~~L~~~RPt~v~l~nai~~~~~~i~~~ 121 (374)
+++|++++||+|+|||||+||++|+++|++++++. ++.+..++++.|+..+++|.++|||+++|+|+++++++.++.
T Consensus 1 ~~~~~~~~ik~~~vrGa~~ia~~aa~~l~~~~~~~--~~~~~~~~~~~l~~~~~~L~~arPt~v~l~nai~~~~~~i~~- 77 (301)
T TIGR00511 1 DVEETAEKIRSMEIRGAGRIARAAAAALMEQAAKA--ESASPEEFRAEMREAANILISTRPTAVSLPNAVRYVLKYMSG- 77 (301)
T ss_pred CHHHHHHHHHhCcccCcHHHHHHHHHHHHHHHHhc--ccCCHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHhcc-
Confidence 47899999999999999999999999999999875 456889999999999999999999999999999999988743
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCC
Q 017293 122 AATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGV 201 (374)
Q Consensus 122 ~~~~~~~~e~~~~l~~~~~~~~~e~~~a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~ 201 (374)
.+.+++++.+++.+++|++++..++++|+++|.++|. +|++||||||| +||+++|+.|+++|+
T Consensus 78 ----~~~~~~k~~l~~~~~~~~~e~~~a~~~I~~~a~~~i~-----~g~~ILT~~~S--------~tv~~~l~~a~~~~~ 140 (301)
T TIGR00511 78 ----EDVETLRETVIERADAFINQSDKAQERIGEIGAKRIR-----DGDVVMTHCNS--------EAALSVIKTAFEQGK 140 (301)
T ss_pred ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCCEEEEECCc--------HHHHHHHHHHHHcCC
Confidence 4788999999999999999999999999999999999 89999999998 799999999999999
Q ss_pred eeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcC
Q 017293 202 LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHN 281 (374)
Q Consensus 202 ~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~ 281 (374)
+|+|||+||||.+|| ++++++|.+.|||||+|+|++++++| ++||+|++|||+|++||+++||+|||++|++||+|+
T Consensus 141 ~f~V~v~EsrP~~~G-~~~a~~L~~~gI~vtlI~Dsa~~~~m--~~vd~VivGad~v~~nG~v~nkiGT~~lA~~Ak~~~ 217 (301)
T TIGR00511 141 DIEVIATETRPRKQG-HITAKELRDYGIPVTLIVDSAVRYFM--KEVDHVVVGADAITANGALINKIGTSQLALAAREAR 217 (301)
T ss_pred cEEEEEecCCCcchH-HHHHHHHHHCCCCEEEEehhHHHHHH--HhCCEEEECccEEecCCCEEEHHhHHHHHHHHHHhC
Confidence 999999999999999 67799999999999999999999999 889999999999999999999999999999999999
Q ss_pred CeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCccccCCCceeecceeeecCCCCccEEEeCCCCcccCCCcC
Q 017293 282 ILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKQGVVTKAGAD 361 (374)
Q Consensus 282 vPvyV~a~~~K~~~~~~~~~~i~ie~r~~~ev~~~~~~~~~~~~~~~~~v~np~fD~tP~~lIt~iITE~~Gi~~p~~~~ 361 (374)
|||||+||+|||++.++.++.+.+|++||+|+...++ . ..+++++++||+||+|||+|||+||||+ |+++|++..
T Consensus 218 vPv~V~a~~~K~~~~~~~~~~~~ie~~~~~ev~~~~~---~-~~~~~~~v~np~fD~tP~~lIt~iITe~-Gi~~p~~i~ 292 (301)
T TIGR00511 218 VPFMVAAETYKFHPKTITGELVEIEERDPTEVLDEED---L-KQLGAVKVRNPAFDVTPAEYIDAIITEV-GQIPPEMAY 292 (301)
T ss_pred CCEEEEcccceecCCCCCCCcccccccCHHHhccccC---c-cCCCCccccCcceecCCHHHCCEEEeCC-CcCCcHHHH
Confidence 9999999999999999999999999999999987652 1 3467899999999999999999999999 999887542
Q ss_pred ccccHHHHH
Q 017293 362 DAFDIKDFI 370 (374)
Q Consensus 362 ~~~~~~~~~ 370 (374)
..+.++|
T Consensus 293 --~~l~~~~ 299 (301)
T TIGR00511 293 --TIIKELL 299 (301)
T ss_pred --HHHHHHc
Confidence 3566665
No 11
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=100.00 E-value=8.9e-75 Score=563.88 Aligned_cols=299 Identities=35% Similarity=0.454 Sum_probs=277.2
Q ss_pred ChHHHHHHHHhccccCcHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHH
Q 017293 42 DSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKA 121 (374)
Q Consensus 42 ~~~~v~~aI~~m~VrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l~~~~~~L~~~RPt~v~l~nai~~~~~~i~~~ 121 (374)
++++++.+|++|+|||||++|++++++|+++++++ .+.+..++++.|+..+++|.++|||+++|+|+++++++...
T Consensus 6 ~v~~~~~~i~~~~v~Ga~~i~~~a~~~l~~~~~~~--~~~~~~~l~~~l~~~~~~L~~arPt~v~l~nair~v~~~~~-- 81 (310)
T PRK08535 6 EVLETAEKIKTMEIRGAGRIARAAAEALKDQAEKS--DAESPEEFKAEMRAAANILISTRPTAVSLPNAVRYVMRYYS-- 81 (310)
T ss_pred hHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHhhc--
Confidence 78999999999999999999999999999999886 45678899999999999999999999999999999987632
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCC
Q 017293 122 AATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGV 201 (374)
Q Consensus 122 ~~~~~~~~e~~~~l~~~~~~~~~e~~~a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~ 201 (374)
..+.+++++.+++.+++|++++..++++|+++|.++|. +|++||||||| +||+++|+.|+++|+
T Consensus 82 ---~~~~~~~k~~l~e~~~~~~~e~~~~~~~I~~~a~~~i~-----~g~~ILT~~~S--------~tv~~~l~~A~~~~k 145 (310)
T PRK08535 82 ---GETVEEARESVIERAEEFIESSENAVEKIGEIGAKRIR-----DGDVIMTHCNS--------SAALSVIKTAHEQGK 145 (310)
T ss_pred ---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCCEEEEeCCc--------HHHHHHHHHHHHCCC
Confidence 35789999999999999999999999999999999999 89999999998 799999999999999
Q ss_pred eeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcC
Q 017293 202 LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHN 281 (374)
Q Consensus 202 ~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~ 281 (374)
+|+|||+||||.+|| ++++++|.+.|||||+|+|++++++| ++||+||+|||+|++||+++||+|||++|++||+|+
T Consensus 146 ~~~V~v~EsrP~~~G-~~~a~~L~~~GI~vtlI~Dsav~~~m--~~vd~VivGAd~v~~nG~v~nkiGT~~~A~~Ak~~~ 222 (310)
T PRK08535 146 DIEVIATETRPRNQG-HITAKELAEYGIPVTLIVDSAVRYFM--KDVDKVVVGADAITANGAVINKIGTSQIALAAHEAR 222 (310)
T ss_pred eEEEEEecCCchhhH-HHHHHHHHHCCCCEEEEehhHHHHHH--HhCCEEEECccEEecCCCEEeHHhHHHHHHHHHHhC
Confidence 999999999999999 67899999999999999999999999 889999999999999999999999999999999999
Q ss_pred CeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCccccCCCceeecceeeecCCCCccEEEeCCCCcccCCCcC
Q 017293 282 ILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKQGVVTKAGAD 361 (374)
Q Consensus 282 vPvyV~a~~~K~~~~~~~~~~i~ie~r~~~ev~~~~~~~~~~~~~~~~~v~np~fD~tP~~lIt~iITE~~Gi~~p~~~~ 361 (374)
|||||+||+|||++.++.++++++|+|+|+|+...+ ....+++++++||+||+|||+|||+||||. |+++|+++.
T Consensus 223 vPv~V~a~~~K~~~~~~~~~~~~ie~~~~~ev~~~~----~~~~~~~v~v~np~fD~tP~~lIt~iiTe~-Gi~~ps~v~ 297 (310)
T PRK08535 223 VPFMVAAETYKFSPKTLLGELVEIEERDPTEVLPEE----ILAKLPGVKVRNPAFDVTPPEYIDAIITEI-GAIPPEMAY 297 (310)
T ss_pred CCEEEecccceecCCCCCCCcceecccCHHHhcccc----cccCCCCceeeccCcccCCHHHCCEEEeCC-CcCChHHHH
Confidence 999999999999999999999999999999997653 224567899999999999999999999999 999888553
Q ss_pred ccccHHHHH
Q 017293 362 DAFDIKDFI 370 (374)
Q Consensus 362 ~~~~~~~~~ 370 (374)
..+.++|
T Consensus 298 --~~~~~~~ 304 (310)
T PRK08535 298 --TIIKEYL 304 (310)
T ss_pred --HHHHHHh
Confidence 4555554
No 12
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=100.00 E-value=1.1e-73 Score=543.64 Aligned_cols=271 Identities=26% Similarity=0.326 Sum_probs=251.0
Q ss_pred cChHHHHHHHHhccccCcHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHH
Q 017293 41 RDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISK 120 (374)
Q Consensus 41 ~~~~~v~~aI~~m~VrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l~~~~~~L~~~RPt~v~l~nai~~~~~~i~~ 120 (374)
.++.++++.|++|+||||||||++|+++++++++.. +..++.+.+++..+.|.++||||+||.|++++|.
T Consensus 4 ~~~~~~~~~i~~m~vrGAp~i~~~aa~~l~~~a~~~-----~~~~~~~~l~~~~~~L~~aRPTavnL~~a~~~~~----- 73 (275)
T PRK08335 4 PEVREILEEMKAERIRGASWLAKKGAEAYLLLAEEL-----DGEELENALKELREEIPEVNPTMASLYNLARFIP----- 73 (275)
T ss_pred hHHHHHHHHHhhceecCHHHHHHHHHHHHHHHHHhc-----ChHHHHHHHHHHHHHHHHcCCcHHhHHHHHHHhc-----
Confidence 367899999999999999999999999999887763 2267889999999999999999999999998871
Q ss_pred HhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCC
Q 017293 121 AAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEG 200 (374)
Q Consensus 121 ~~~~~~~~~e~~~~l~~~~~~~~~e~~~a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g 200 (374)
.++.++.+.+.+++|++++.+++++|+++|+++|. +|++||||||| +|++++|+.|+++|
T Consensus 74 -------~~~~~~~~~~~a~~~~~~~~~~~~~I~~~a~~~I~-----~g~~ILTh~~S--------~tv~~~l~~A~~~g 133 (275)
T PRK08335 74 -------ITNNPELVKSRAEEFLRLMEEAKREIGNIGSELID-----DGDVIITHSFS--------SAVLEILKTAKRKG 133 (275)
T ss_pred -------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCCEEEEECCc--------HHHHHHHHHHHHcC
Confidence 23466778999999999999999999999999999 89999999998 69999999999999
Q ss_pred CeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhc
Q 017293 201 VLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFH 280 (374)
Q Consensus 201 ~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~ 280 (374)
++|+|||+||||++||.+| +|+|.+.||||++|+|++++++| ++||+||+|||+|++||+++||+|||++|++||+|
T Consensus 134 k~~~V~v~EsrP~~qG~~l-a~eL~~~GI~vtlI~Dsa~~~~m--~~vd~VivGAD~I~~nG~v~NKiGT~~lA~~Ak~~ 210 (275)
T PRK08335 134 KRFKVILTESAPDYEGLAL-ANELEFLGIEFEVITDAQLGLFA--KEATLALVGADNVTRDGYVVNKAGTYLLALACHDN 210 (275)
T ss_pred CceEEEEecCCCchhHHHH-HHHHHHCCCCEEEEeccHHHHHH--HhCCEEEECccEEecCCCEeehhhHHHHHHHHHHc
Confidence 9999999999999999998 99999999999999999999999 88999999999999999999999999999999999
Q ss_pred CCeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCccccCCCceeecceeeecCCCCccEEEeCCCCcccCCCc
Q 017293 281 NILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKQGVVTKAGA 360 (374)
Q Consensus 281 ~vPvyV~a~~~K~~~~~~~~~~i~ie~r~~~ev~~~~~~~~~~~~~~~~~v~np~fD~tP~~lIt~iITE~~Gi~~p~~~ 360 (374)
+|||||+||+|||++..+.+ ++++|+|++ .+++++++||+||+|||+|||+||||+ |+++|+.+
T Consensus 211 ~vPfyV~a~~~k~~~~~~~~-~i~ieer~~--------------~~~~~~v~Np~FDvTP~~lIt~iITE~-Gv~~p~~~ 274 (275)
T PRK08335 211 GVPFYVAAETFKFHPELKSE-EVELVERPY--------------ARQGHRVRNVLFDVTPWKYVRGIITEL-GILVPPRE 274 (275)
T ss_pred CCCEEEECccceecccCCCC-CccccccCC--------------CCCCceecCcCccCCCHHHCCEEEccC-CccCCCCC
Confidence 99999999999999998887 788888854 246789999999999999999999999 99988753
No 13
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.5e-66 Score=493.96 Aligned_cols=288 Identities=32% Similarity=0.405 Sum_probs=268.0
Q ss_pred ChHHHHHHHHhccccCcHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHH
Q 017293 42 DSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKA 121 (374)
Q Consensus 42 ~~~~v~~aI~~m~VrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l~~~~~~L~~~RPt~v~l~nai~~~~~~i~~~ 121 (374)
.+.+..+.|++|++|||.+++++++.+|...++++ .+.+.++|.+.++...+.|.++||++++|.|++|++++
T Consensus 5 ~v~~~~~~lk~~~i~Ga~~ia~~a~eal~~~~~~~--~~~~~~~l~~~i~~~~~~L~~~~P~~~Sl~n~~r~v~~----- 77 (301)
T COG1184 5 EVDETAEKLKSMEIRGASWIAIAAAEALEILASDS--QAPTVEELIDAIRELSETLVKARPTAVSLGNLIRFVLR----- 77 (301)
T ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhcc--ccccHHHHHHHHHHHHHHHHhcCCcceeHHHHHHHHHh-----
Confidence 46788999999999999999999999999888876 56779999999999999999999999999999999987
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCC
Q 017293 122 AATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGV 201 (374)
Q Consensus 122 ~~~~~~~~e~~~~l~~~~~~~~~e~~~a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~ 201 (374)
.....+.++.++.+++.++.|+++...+.++|++.|+++|+ ||++|||||+| ++|+.+|++|++.|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~i~~~~~a~~~ia~~~a~~i~-----dg~~IlTh~~S--------~~v~~~l~~A~~~~k 144 (301)
T COG1184 78 DSSGGDKENRRQSLIKAAQEFIDRVEKAKERIAEIGAERIH-----DGDVILTHSFS--------KTVLEVLKTAADRGK 144 (301)
T ss_pred cccccchhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcc-----CCCEEEEecCc--------HHHHHHHHHhhhcCC
Confidence 22356788999999999999999999999999999999999 89999999997 799999999999999
Q ss_pred eeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcC
Q 017293 202 LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHN 281 (374)
Q Consensus 202 ~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~ 281 (374)
+|+|||+||||.+||.. ++++|++.||++++|+||+++++| .+||+|++|||+|++||+++||+||+++|++||+++
T Consensus 145 ~~~V~VtESRP~~eG~~-~ak~L~~~gI~~~~I~Dsa~~~~~--~~vd~VivGad~I~~nG~lvnkiGT~~lA~~A~e~~ 221 (301)
T COG1184 145 RFKVIVTESRPRGEGRI-MAKELRQSGIPVTVIVDSAVGAFM--SRVDKVLVGADAILANGALVNKIGTSPLALAARELR 221 (301)
T ss_pred ceEEEEEcCCCcchHHH-HHHHHHHcCCceEEEechHHHHHH--HhCCEEEECccceecCCcEEeccchHHHHHHHHHhC
Confidence 99999999999999975 589999999999999999999999 999999999999999999999999999999999999
Q ss_pred CeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCccccCCCceeecceeeecCCCCccEEEeCCCCcccCCCc
Q 017293 282 ILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKQGVVTKAGA 360 (374)
Q Consensus 282 vPvyV~a~~~K~~~~~~~~~~i~ie~r~~~ev~~~~~~~~~~~~~~~~~v~np~fD~tP~~lIt~iITE~~Gi~~p~~~ 360 (374)
+||||||++|||.+.++.+....++++|+.|+.... ...+++++||+||+|||+||++||||. |+++|+..
T Consensus 222 ~Pf~v~aesyKf~p~~~~~~~~~~~~~~~~e~~~~~-------~~~~~~v~Np~fD~TP~~~Id~iITe~-G~~pp~~~ 292 (301)
T COG1184 222 VPFYVVAESYKFVPKTLLDTLVEIELRDPLEVAREE-------PLGNLKVRNPAFDVTPPEYIDAIITEL-GIIPPSSI 292 (301)
T ss_pred CCEEEEeeeecccccccCCCcceeeccChhhccccC-------cccCccccccccCCCcHHHhheeeecC-CCCCchhH
Confidence 999999999999999999999999999999987432 122689999999999999999999999 99888854
No 14
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=100.00 E-value=2e-65 Score=492.63 Aligned_cols=281 Identities=33% Similarity=0.442 Sum_probs=245.5
Q ss_pred cccCcHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHH
Q 017293 54 VVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQ 133 (374)
Q Consensus 54 ~VrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l~~~~~~L~~~RPt~v~l~nai~~~~~~i~~~~~~~~~~~e~~~ 133 (374)
+||||+++|++++.+|...++++ ++.+.++|++.|+.++++|.++||++++|.|+++++++.+.+. ....+.++.++
T Consensus 1 qi~Gs~~~ai~al~~L~~~i~~~--~~~~~~el~~~L~~~~~~L~~arP~~~~l~n~v~~~~~~i~~~-~~~~~~~~~~~ 77 (282)
T PF01008_consen 1 QIRGSPAIAIAALEALRQVISDS--KATTVQELIEELRKAAKRLIKARPTSVSLGNAVRRILREIRKL-DESEDFEEAKQ 77 (282)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHHC--HCSSHHHHHHHHHHHHHHHHTSSTS-HHHHHHHHHHHHHHHHH-HTTSSHHHHHH
T ss_pred CccChHHHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHhhhhhhh-hcccchHHHHH
Confidence 68999999999999999999987 5778999999999999999999999999999999999977655 34578899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCC
Q 017293 134 AYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPF 213 (374)
Q Consensus 134 ~l~~~~~~~~~e~~~a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~ 213 (374)
.+++.+++|.++...++++|++++.++|. ++++|||||+| ++|+.+|+.|+++|++|+|||+||||.
T Consensus 78 ~l~~~i~~~~~e~~~~~~~I~~~~~~~I~-----~~~~ILT~~~S--------~~v~~~l~~a~~~~~~~~V~v~es~P~ 144 (282)
T PF01008_consen 78 SLLEAIDEFLDEIEQAREKIADHASELIN-----DGDTILTHGYS--------STVERFLLSAKKKGKKFRVIVLESRPY 144 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCC------TTEEEEEES----------SHHHHHHHHHHHTTEEEEEEEE--TTT
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcc-----CCeEEEEeCCc--------hHHHHHHHHHHHcCCeEEEEEccCCcc
Confidence 99999999999999999999999999999 89999999997 689999999999999999999999999
Q ss_pred CcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCC-CCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccCcc
Q 017293 214 NQGSRLTAFELVHDRIPATLIADSAAAALMKDGR-VSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTS 292 (374)
Q Consensus 214 ~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~-vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~K 292 (374)
+||. .+|++|++.||+|++|+|++++++| ++ ||+|++|||+|++||+++||+||+++|++||+|+|||||+||+||
T Consensus 145 ~eG~-~~a~~L~~~gi~v~~i~d~~~~~~m--~~~vd~VliGad~v~~nG~v~nk~Gt~~~a~~Ak~~~vPv~v~~~~~K 221 (282)
T PF01008_consen 145 NEGR-LMAKELAEAGIPVTLIPDSAVGYVM--PRDVDKVLIGADAVLANGGVVNKVGTLQLALAAKEFNVPVYVLAESYK 221 (282)
T ss_dssp THHH-THHHHHHHTT-EEEEE-GGGHHHHH--HCTESEEEEE-SEEETTS-EEEETTHHHHHHHHHHTT-EEEEE--GGG
T ss_pred hhhh-hHHHHhhhcceeEEEEechHHHHHH--HHhCCeeEEeeeEEecCCCEeehhhHHHHHHHHHhhCCCEEEEccccc
Confidence 9995 5689999999999999999999999 66 999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCccccccCCcccceeccCCCCccccCCCceeecceeeecCCCCccEEEeCCCCcccC
Q 017293 293 IDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKQGVVTK 357 (374)
Q Consensus 293 ~~~~~~~~~~i~ie~r~~~ev~~~~~~~~~~~~~~~~~v~np~fD~tP~~lIt~iITE~~Gi~~p 357 (374)
|++.++.+....+|.++|.|+...+ +....+++++++||.||+|||+|||+||||. |+++|
T Consensus 222 ~~~~~~~~~~~~~e~~~~~~v~~~~---~~~~~~~~v~~~~p~~D~tP~~~It~~iTe~-G~~~P 282 (282)
T PF01008_consen 222 FSPRYPLDQDSFNELRDPQEVLPFD---GSSIVPENVDVINPLFDYTPPDLITLIITEL-GILPP 282 (282)
T ss_dssp BETTCSSGGGSSS-B--THHHHEET---TEEESTTTEEEE-BSEEEEEGGG-SEEEETT-EEE-C
T ss_pred ccccccccchhhhhccccceeeccC---CcccccceeeccCccEeecCHHHCCEEEcCC-CCCCc
Confidence 9999999988999999999999887 3344567999999999999999999999999 99998
No 15
>KOG1466 consensus Translation initiation factor 2B, alpha subunit (eIF-2Balpha/GCN3) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-57 Score=417.64 Aligned_cols=282 Identities=25% Similarity=0.324 Sum_probs=249.6
Q ss_pred HHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHh-hccCCHHHHHHHHHHHH
Q 017293 61 IAMAAALSLAVEVFNLNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKAA-ATASEANSVFQAYIEAA 139 (374)
Q Consensus 61 i~~~aa~~l~~~~~~~~~~~~~~~el~~~l~~~~~~L~~~RPt~v~l~nai~~~~~~i~~~~-~~~~~~~e~~~~l~~~~ 139 (374)
.++||..+|+..++++ ..+|..|+...|+++.+.|++.-++.+++..+++.+.+++.+.. ....|+++.++.+++.+
T Consensus 29 ~~vAAIraL~~vL~~s--~a~Ti~el~~~l~~a~~tL~~~d~ss~Sl~agcdlF~Rfvtr~slld~~Df~~ck~~l~erg 106 (313)
T KOG1466|consen 29 MAVAAIRALLEVLRRS--QATTIAELENELKSASATLKKTDTSSISLRAGCDLFMRFVTRASLLDYEDFEQCKQHLLERG 106 (313)
T ss_pred hHHHHHHHHHHHHhhc--ccchHHHHHHHHHHHHHHHHccCccchhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Confidence 4566777787777776 57899999999999999999999999999999999999997763 45678999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHh
Q 017293 140 EIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRL 219 (374)
Q Consensus 140 ~~~~~e~~~a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l 219 (374)
+.|+++...++.+|++.+.+||. ||++||||++| ..|+++|..|+++++.|+|||+||||..+|..|
T Consensus 107 ~~F~~~~~~sR~~IA~l~~~Fi~-----dg~~ILtHg~S--------RvVl~~L~~Aa~~~~~F~V~vTEsrPd~sG~lm 173 (313)
T KOG1466|consen 107 ELFIERARKSRQKIAMLAQDFIT-----DGCTILTHGYS--------RVVLEVLLTAAQNKKRFRVYVTESRPDGSGKLM 173 (313)
T ss_pred HHHHHHHHHHHHHHHHHhhhHhh-----CCCEEEEcchh--------HHHHHHHHHHHhcCceEEEEEecCCCCCchhHH
Confidence 99999999999999999999999 99999999876 568899999999999999999999999999865
Q ss_pred HHHHHhhCCCCeEEEcchHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccCccccCCCCC
Q 017293 220 TAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSS 299 (374)
Q Consensus 220 ~a~~L~~~GI~vtlI~Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~K~~~~~~~ 299 (374)
+++|.+.|||||++.||++||.| .+||+|+||||+|.+||+++|++|||++|++||+.++||||+||+|||.+.+|.
T Consensus 174 -~~~L~~~~IPvtlvlDSaVgyvM--e~vD~VlVGAEGVvEsGGIIN~iGTyq~~v~Ak~~~kPfYV~AES~KFvRlfPL 250 (313)
T KOG1466|consen 174 -AKELKKLGIPVTLVLDSAVGYVM--ERVDLVLVGAEGVVESGGIINKIGTYQVAVCAKSMNKPFYVVAESHKFVRLFPL 250 (313)
T ss_pred -HHHHHhcCCCeEEEehhhHHHHH--hhccEEEEccceeeecCceeeecccchhhhhHHhcCCCeEEEeeccceeeeccC
Confidence 78999999999999999999999 999999999999999999999999999999999999999999999999998885
Q ss_pred CC-ccccccCCcccceeccCCCCccccCCCceeecceeeecCCCCccEEEeCCCCcccCCCcCccccHHHHH
Q 017293 300 GQ-EIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKQGVVTKAGADDAFDIKDFI 370 (374)
Q Consensus 300 ~~-~i~ie~r~~~ev~~~~~~~~~~~~~~~~~v~np~fD~tP~~lIt~iITE~~Gi~~p~~~~~~~~~~~~~ 370 (374)
++ ++|.+.+ |-++.... ...+++...+|..|||||+|||++|||. |+++|++++ -||=++|
T Consensus 251 nQ~Dlp~~~~-p~~f~~~~------~~~~~~~~e~p~vDYTpPeyiTlL~TDL-GvltPSaVs--dELIKlY 312 (313)
T KOG1466|consen 251 NQKDLPPALP-PFKFSRPV------PEREDVEREHPTVDYTPPEYLTLLFTDL-GVLTPSAVS--DELIKLY 312 (313)
T ss_pred cccccccccC-CcccCCCC------CcHHhhhhcCCCcccChHHHHHHHHhhc-cccChhhhh--HHHHHhh
Confidence 53 4555433 32322110 1223678889999999999999999999 999999998 6666665
No 16
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.8e-55 Score=431.54 Aligned_cols=298 Identities=20% Similarity=0.253 Sum_probs=270.0
Q ss_pred HHHHHHh-------ccccCcHHHHHHHHHHHHHHHhhccCCCCC--HHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHH
Q 017293 46 GWSAIRE-------MVVRGAPAIAMAAALSLAVEVFNLNAFSGT--AADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKE 116 (374)
Q Consensus 46 v~~aI~~-------m~VrGA~ai~~~aa~~l~~~~~~~~~~~~~--~~el~~~l~~~~~~L~~~RPt~v~l~nai~~~~~ 116 (374)
++.+|-+ ..|.|.+++|++...+|..+++++.++.++ .++|...|+.++++|.+|||.+++|+|++|++++
T Consensus 233 IHPAv~~Lglq~a~~kI~GsnaRCIa~L~afqevi~Dy~TP~~ktlsrdLt~~i~~qv~~L~~cRPLs~SmgNAiRflK~ 312 (556)
T KOG1467|consen 233 IHPAVLRLGLQYALGKISGSNARCIAMLQAFQEVIKDYTTPPEKTLSRDLTAAISPQVSFLTQCRPLSISMGNAIRFLKN 312 (556)
T ss_pred ccHHHHHHHHHHhhcccCCccHHHHHHHHHHHHHHHhccCCCccccchhhHhhhhhHHHHHhhcCCccchhhHHHHHHHH
Confidence 6777655 479999999999999999999998654443 6899999999999999999999999999999999
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHH
Q 017293 117 IISKAAATASEANSVFQAYIEAAEIMLKDD-VATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRA 195 (374)
Q Consensus 117 ~i~~~~~~~~~~~e~~~~l~~~~~~~~~e~-~~a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~tv~~~l~~ 195 (374)
.|+... ...+..|.++.|.+.++.|+++. +.+.+.|.+++.+.|. ||++||||+.| ++|..+|.+
T Consensus 313 eI~~L~-~s~~e~eaKe~L~~~I~~~i~eki~~A~qaI~q~a~~KI~-----dgdviltyg~s--------~vV~~ill~ 378 (556)
T KOG1467|consen 313 EISKLP-ISLSESEAKEELQSDIDRFIAEKIILADQAISQHAVTKIQ-----DGDVLLTYGSS--------SVVNMILLE 378 (556)
T ss_pred HHhhCC-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----cCCEEEEecch--------HHHHHHHHH
Confidence 998874 34556788999999999999875 6799999999999999 99999999865 567789999
Q ss_pred HHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHH
Q 017293 196 LHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLAL 275 (374)
Q Consensus 196 a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~ 275 (374)
|++.|++|+|+|++|||.+||.++ .+.|.+.||+|+|+.-++++|+| ..+++||+||++|++||.++.++||.++||
T Consensus 379 A~~~~k~frVvVVDSRP~~EG~~~-lr~Lv~~GinctYv~I~a~syim--~evtkvfLGahailsNG~vysR~GTa~val 455 (556)
T KOG1467|consen 379 AKELGKKFRVVVVDSRPNLEGRKL-LRRLVDRGINCTYVLINAASYIM--LEVTKVFLGAHAILSNGAVYSRVGTACVAL 455 (556)
T ss_pred HHHhCcceEEEEEeCCCCcchHHH-HHHHHHcCCCeEEEEehhHHHHH--HhcceeeechhhhhcCcchhhhcchHHHHH
Confidence 999999999999999999999987 68999999999999999999999 999999999999999999999999999999
Q ss_pred HHHhcCCeEEEeccCccccCCCCCCCccccccCCcccceeccCCC-----CccccCCCceeecceeeecCCCCccEEEeC
Q 017293 276 CAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGL-----GEQVAASGISVWNPAFDVTPANLITGIITE 350 (374)
Q Consensus 276 ~Ak~~~vPvyV~a~~~K~~~~~~~~~~i~ie~r~~~ev~~~~~~~-----~~~~~~~~~~v~np~fD~tP~~lIt~iITE 350 (374)
+|++|||||+||||+|||+.+.+.+.-+.+|..||+.+....|.+ ..|....++...|..||+||||||+++|||
T Consensus 456 vAna~nVPVlVCCE~yKF~eRvQlDsi~~NEL~dpn~l~~v~g~~~~~~L~~wqn~~~L~~lnl~YD~TPpelIs~vVTe 535 (556)
T KOG1467|consen 456 VANAFNVPVLVCCEAYKFHERVQLDSIVSNELGDPNALQEVRGREDKVALAGWQNNANLKFLNLMYDVTPPELISAVVTE 535 (556)
T ss_pred HhcccCCCEEEEechhhhhhhhhhhhhhhcccCChhhhhhccCcchhhhhhccccccccchhheeeccCcHHHHHHHHhh
Confidence 999999999999999999999999988889999999887666421 246677899999999999999999999999
Q ss_pred CCCcccCCCcC
Q 017293 351 KQGVVTKAGAD 361 (374)
Q Consensus 351 ~~Gi~~p~~~~ 361 (374)
. |+++|+.+-
T Consensus 536 ~-g~lp~TSVP 545 (556)
T KOG1467|consen 536 L-GMLPPTSVP 545 (556)
T ss_pred c-cccCCccch
Confidence 9 999999653
No 17
>KOG1465 consensus Translation initiation factor 2B, beta subunit (eIF-2Bbeta/GCD7) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-53 Score=398.34 Aligned_cols=294 Identities=26% Similarity=0.332 Sum_probs=271.0
Q ss_pred ChHHHHHHHHhccccCcHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHH
Q 017293 42 DSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKA 121 (374)
Q Consensus 42 ~~~~v~~aI~~m~VrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l~~~~~~L~~~RPt~v~l~nai~~~~~~i~~~ 121 (374)
.+.+.+.++|...|||+.+|+...+..|...+.+. .|.+..+|++.++..++.|..+.|+..+.+|.+||+.+.++++
T Consensus 10 ~i~~fI~~lk~r~v~gS~aiA~eTl~llr~iIs~~--rw~~~n~Li~~vr~~g~~L~~A~psE~~~gNiirrIlkliReE 87 (353)
T KOG1465|consen 10 EISEFIAALKKRLVRGSYAIAIETLNLLRQIISRE--RWSTANDLIESVRDVGKKLHAAQPSELSCGNIIRRILKLIREE 87 (353)
T ss_pred HHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHHhhhcCCchhhhhHHHHHHHHHHHHH
Confidence 46789999999999999999999988888877664 6889999999999999999999999999999999999999987
Q ss_pred hhc-------c--------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCC
Q 017293 122 AAT-------A--------------------------SEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNS 168 (374)
Q Consensus 122 ~~~-------~--------------------------~~~~e~~~~l~~~~~~~~~e~~~a~~~I~~~~~~~i~~~~~~~ 168 (374)
..+ + .+..++++.+++.++++++|+...++.|+.++.++|+ +
T Consensus 88 ~~~l~~~~~s~~s~~~~Sl~kLl~~~~e~~~~~~~S~~~~~~lr~~~i~~I~eli~Eie~~~E~Ia~Qa~ehih-----s 162 (353)
T KOG1465|consen 88 VLELTGGATSDESSPSESLHKLLQSTEESHTNKKLSSADAKKLRKDLIEGIKELITEIEGSRENIAVQAIEHIH-----S 162 (353)
T ss_pred HHHHhccCCCCCCchHHHHHHHHhCCCccccccccccccHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhc-----c
Confidence 531 0 1234689999999999999999999999999999999 8
Q ss_pred CcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCCC
Q 017293 169 KFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRV 248 (374)
Q Consensus 169 ~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~v 248 (374)
+++|||++.| .||+.+|++|.++|++|+|+|.|..|.+||+.| |+.|.+.||++|+|+|++++++| ++|
T Consensus 163 nEviLT~g~S--------rTV~~FL~~A~kk~Rkf~viVaE~~p~~qgH~~-Ak~la~~giettVI~daaVfA~M--srV 231 (353)
T KOG1465|consen 163 NEVILTLGSS--------RTVENFLKHAAKKGRKFRVIVAEGAPNNQGHEL-AKPLAQAGIETTVIPDAAVFAMM--SRV 231 (353)
T ss_pred CceEEecCcc--------HHHHHHHHHHHhccCceEEEEeecCCcccchHh-hHHHHHcCCeeEEeccHHHHHHh--hhc
Confidence 9999999854 799999999999999999999999999999765 88999999999999999999999 999
Q ss_pred CEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCccccCCC
Q 017293 249 SAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASG 328 (374)
Q Consensus 249 d~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~K~~~~~~~~~~i~ie~r~~~ev~~~~~~~~~~~~~~~ 328 (374)
+|||+|+++|++||++....|++++|++||+|.+|||||||.||++|.+|.+.+..++.++|+++.++.. | .....
T Consensus 232 nKVIigt~avl~NGgl~~~~G~~~vAlaAk~h~vPv~VlAp~yKLsPlyp~~~ds~~~f~s~~~il~~~e--~--~~~~~ 307 (353)
T KOG1465|consen 232 NKVIIGTHAVLANGGLRAPSGVHTVALAAKHHSVPVIVLAPMYKLSPLYPTNPDSFHEFRSPSEILPFSE--G--DPAGR 307 (353)
T ss_pred ceEEEEeeeEecCCCeeccchHHHHHHHHHhcCCcEEEecchhhcCCCCCCCHHHHHhcCCcccccCccc--c--Ccccc
Confidence 9999999999999999999999999999999999999999999999999999998899999999998863 2 12456
Q ss_pred ceeecceeeecCCCCccEEEeCCCCcccCC
Q 017293 329 ISVWNPAFDVTPANLITGIITEKQGVVTKA 358 (374)
Q Consensus 329 ~~v~np~fD~tP~~lIt~iITE~~Gi~~p~ 358 (374)
+++.||.|||+||||||.|||+. |-+.|+
T Consensus 308 ~~v~nP~fDyvppeLVtLFIsNt-gg~~PS 336 (353)
T KOG1465|consen 308 VDVLNPAFDYVPPELVTLFISNT-GGVAPS 336 (353)
T ss_pred eeecccccccCChhheeEEEecC-CCCChH
Confidence 89999999999999999999999 999998
No 18
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=100.00 E-value=6.4e-51 Score=382.71 Aligned_cols=248 Identities=21% Similarity=0.214 Sum_probs=196.0
Q ss_pred HHHHhccccCcHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHhhccCC
Q 017293 48 SAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASE 127 (374)
Q Consensus 48 ~aI~~m~VrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l~~~~~~L~~~RPt~v~l~nai~~~~~~i~~~~~~~~~ 127 (374)
+.|.+.+.+|+.|++..++.-|. +. . . + ...++.|.++||.|..+.|.++++++-- ..+
T Consensus 4 ~~~~~d~~~Gs~~~~~~~l~~l~----~~---~--~-~-----~~~~~~l~~~~~~Ma~~~n~~~~~~~~~------~~~ 62 (253)
T PRK06372 4 KDLLSDNASGSADVAFKIISFFS----HN---D--I-D-----ENIIKDLKNYFFGMGLVRNVCDSIISGP------NLR 62 (253)
T ss_pred HHhhcCccccHHHHHHHHHHHHh----cc---c--h-h-----hhHHHHHHHhCcchHHHHHHHHHHHccC------cCC
Confidence 46788999999999887654332 21 1 1 1 2377789999999999999888776321 234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEE
Q 017293 128 ANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYC 207 (374)
Q Consensus 128 ~~e~~~~l~~~~~~~~~e~~~a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v 207 (374)
.++++..+. .+.+.+++++.++|. +++||||++| +++..+|..+ ++.++|||
T Consensus 63 ~~~~~~~~~-----------~~~~~~~~~A~~~i~------~dvILT~s~S--------~~v~~~l~~~---~~~~~V~v 114 (253)
T PRK06372 63 PKNLKLGIE-----------KHEKMAIEHAKPLFN------DSVIGTISSS--------QVLKAFISSS---EKIKSVYI 114 (253)
T ss_pred HHHHHHHHH-----------HHHHHHHHHHHhhcC------CCEEEEeCCc--------HHHHHHHHhc---CCCCEEEE
Confidence 454444332 466778889999996 5899999865 5677777553 34489999
Q ss_pred ecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEe
Q 017293 208 SETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (374)
Q Consensus 208 ~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~ 287 (374)
+||||.+||+ +++++|.+.||+|++|+|++++++| ++||+|++|||+|++||+++||+||+++|++||+|+|||||+
T Consensus 115 ~ESrP~~eG~-~~a~~L~~~GI~vtli~Dsa~~~~m--~~vd~VlvGAd~V~~nG~v~nkvGT~~~Al~A~~~~vPv~V~ 191 (253)
T PRK06372 115 LESRPMLEGI-DMAKLLVKSGIDVVLLTDASMCEAV--LNVDAVIVGSDSVLYDGGLIHKNGTFPLALCARYLKKPFYSL 191 (253)
T ss_pred ecCCCchHHH-HHHHHHHHCCCCEEEEehhHHHHHH--HhCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEE
Confidence 9999999996 5799999999999999999999999 899999999999999999999999999999999999999999
Q ss_pred ccCccccCCCCCCCccccccCCcccceeccCCCCccccCCCceeecceeeecCCCCccEEEeCCCCcccCCCc
Q 017293 288 APLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKQGVVTKAGA 360 (374)
Q Consensus 288 a~~~K~~~~~~~~~~i~ie~r~~~ev~~~~~~~~~~~~~~~~~v~np~fD~tP~~lIt~iITE~~Gi~~p~~~ 360 (374)
|++|||++.++.+.....+..+ . . ..+++++++||+||+|||+|||+||||. |+++|+++
T Consensus 192 ~~s~Kf~~~~~~~~~~~~~~~~------~----~--~~~~~l~v~Np~FD~TPpelI~~iITE~-Gi~~pssV 251 (253)
T PRK06372 192 TISMKIERNFLYSTYPNFKNHP------C----S--EWNIDIPCINRYFDKTPPDLIDYYINEN-GFVKPSDV 251 (253)
T ss_pred eeccccCCCCcccccccccccc------c----c--cCCCCCceeCcCcCCCCHHHCCEEEcCC-CccccccC
Confidence 9999999775432211110110 0 0 1245789999999999999999999999 99999865
No 19
>TIGR00021 rpiA ribose 5-phosphate isomerase. This model describes ribose 5-phosphate isomerase, an enzyme of the non-oxidative branch of the pentose phosphate pathway.
Probab=97.30 E-value=0.0038 Score=58.33 Aligned_cols=124 Identities=21% Similarity=0.097 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCC----eeEEEEecCCCCCcchHhHHHHHhh
Q 017293 151 KAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGV----LERAYCSETRPFNQGSRLTAFELVH 226 (374)
Q Consensus 151 ~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~----~~~V~v~EsrP~~eG~~l~a~~L~~ 226 (374)
++|++.++++|. +|++|..-+ | +|+..+++...+..+ +++|+ +=| -.++.+|.+
T Consensus 3 ~~IA~~A~~~I~-----~g~~I~lds--G-------ST~~~~~~~L~~~~~~~~l~itvV-t~S-------~~~a~~l~~ 60 (218)
T TIGR00021 3 RAAAEAAAEYVE-----DGMVVGLGT--G-------STVAYFIEALGERVKQEGLDIVGV-PTS-------KQTAELARE 60 (218)
T ss_pred HHHHHHHHHhCC-----CCCEEEECC--c-------HHHHHHHHHHHHhhhccCCCEEEE-eCC-------HHHHHHHHH
Confidence 468888999999 898887643 2 477666666544221 34443 222 124667778
Q ss_pred CCCCeEEEcchHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHH--HHHHhcCCeEEEeccCccccCCCCCCCccc
Q 017293 227 DRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLA--LCAKFHNILFYVAAPLTSIDLTLSSGQEIV 304 (374)
Q Consensus 227 ~GI~vtlI~Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA--~~Ak~~~vPvyV~a~~~K~~~~~~~~~~i~ 304 (374)
.|+++..+ -...++|..|.|||.|-.+++++ |-|.-.+. -+......-+++++.+.||..+.. ...+|
T Consensus 61 ~gi~v~~l--------~~~~~iDiafdGaD~id~~~~~i-kg~g~a~~~eKiia~~A~~~i~l~D~sK~~~~lg-~~plP 130 (218)
T TIGR00021 61 LGIPLSSL--------DEVPELDLAIDGADEVDPNLQLI-KGGGGALLREKIVASASKRFIVIADESKLVDKLG-KFPLP 130 (218)
T ss_pred CCCCEEcH--------hHCCccCEEEECCCeECCCCCEe-cccHHHHHHHHHHHHhhCcEEEEEEchhhhcccC-CCCcc
Confidence 89998611 11158999999999999998874 44432221 122234457899999999976543 33466
Q ss_pred cc
Q 017293 305 IE 306 (374)
Q Consensus 305 ie 306 (374)
+|
T Consensus 131 vE 132 (218)
T TIGR00021 131 VE 132 (218)
T ss_pred EE
Confidence 66
No 20
>cd01398 RPI_A RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. This reaction leads to the conversion of phosphosugars into glycolysis intermediates, which are precursors for the synthesis of amino acids, vitamins, nucleotides, and cell wall components. In plants, RPI is part of the Calvin cycle as ribulose 5-phosphate is the carbon dioxide receptor in the first dark reaction of photosynthesis. There are two unrelated types of RPIs (A and B), which catalyze the same reaction, at least one type of RPI is present in an organism. RPI_A is more widely distributed than RPI_B in bacteria, eukaryotes, and archaea.
Probab=97.26 E-value=0.0027 Score=59.03 Aligned_cols=125 Identities=19% Similarity=0.120 Sum_probs=80.9
Q ss_pred HHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHC----CCeeEEEEecCCCCCcchHhHHHHHhh
Q 017293 151 KAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSE----GVLERAYCSETRPFNQGSRLTAFELVH 226 (374)
Q Consensus 151 ~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~----g~~~~V~v~EsrP~~eG~~l~a~~L~~ 226 (374)
++|++.++++|. ++++|..=+ | +|+..+++...+. +++++|+ +=| .. ++.+|.+
T Consensus 3 ~~IA~~A~~~I~-----~g~~I~lds--G-------ST~~~l~~~L~~~~~~~~~~itvV-TnS------~~-~a~~l~~ 60 (213)
T cd01398 3 RAAARAAVDYVE-----DGMVIGLGT--G-------STVAYFIEALGERVREEGLNIVGV-PTS------FQ-TEELARE 60 (213)
T ss_pred HHHHHHHHHhCC-----CCCEEEECc--h-------HHHHHHHHHHHHhhhccCCCEEEE-eCc------HH-HHHHHHh
Confidence 568888999999 888887643 2 4777666666432 2345554 222 11 3455667
Q ss_pred CCCCeEEEcchHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHH-HHHhcCCeEEEeccCccccCCCCCCCcccc
Q 017293 227 DRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLAL-CAKFHNILFYVAAPLTSIDLTLSSGQEIVI 305 (374)
Q Consensus 227 ~GI~vtlI~Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~-~Ak~~~vPvyV~a~~~K~~~~~~~~~~i~i 305 (374)
.|+++..+- ++.++|+.|+|||.|-.++.+..--|-..+-- +......-+|+++++.||...... ..+|+
T Consensus 61 ~~i~vi~lg--------~~~~~D~af~Gad~id~~~~~~~~~~~a~~kek~i~~~a~~~illaD~sK~~~~l~~-~~lPv 131 (213)
T cd01398 61 LGIPLTDLD--------EVPRLDLAIDGADEVDPDLNLIKGGGGALLREKIVASAAKKFIVIADESKLVERLGE-FPLPV 131 (213)
T ss_pred CCCeEEeCC--------CccccCEEEECCCcCCCCcCcccChHHHHHHHHHHHHhcCeEEEEEecchhcccCCC-CCeeE
Confidence 788876655 34689999999999998875543333322221 233456788999999999876432 34666
Q ss_pred c
Q 017293 306 E 306 (374)
Q Consensus 306 e 306 (374)
|
T Consensus 132 E 132 (213)
T cd01398 132 E 132 (213)
T ss_pred E
Confidence 6
No 21
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=97.10 E-value=0.016 Score=55.40 Aligned_cols=125 Identities=12% Similarity=0.094 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhh-
Q 017293 148 ATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVH- 226 (374)
Q Consensus 148 ~a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~- 226 (374)
...++|++.++++|. +|++|+.=+ | +|+..+.+..... .+++|+. = +.. .+.+|.+
T Consensus 76 ~~K~~IA~~Aa~~I~-----~g~tIfld~--G-------tT~~~la~~L~~~-~~ltVvT-n------sl~-ia~~l~~~ 132 (256)
T PRK10434 76 HKKELIAEAAVSLIH-----DGDSIILDA--G-------STVLQMVPLLSRF-NNITVMT-N------SLH-IVNALSEL 132 (256)
T ss_pred HHHHHHHHHHHhhCC-----CCCEEEEcC--c-------HHHHHHHHHhccC-CCeEEEE-C------CHH-HHHHHhhC
Confidence 456789999999999 899998743 2 4666666665432 2455552 1 112 2445654
Q ss_pred CC-CCeEEE-----------cchHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccCcccc
Q 017293 227 DR-IPATLI-----------ADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSID 294 (374)
Q Consensus 227 ~G-I~vtlI-----------~Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~K~~ 294 (374)
.+ +++.++ ....+-..+++-.+|+.|+|+++|..++++...--...+--++-.....+|++|++.||.
T Consensus 133 ~~~~~v~l~GG~~~~~~~~~~G~~a~~~l~~~~~D~afi~~~gi~~~~G~t~~~~~~~~k~~~~~~a~~~illaD~sKf~ 212 (256)
T PRK10434 133 DNEQTILMPGGTFRKKSASFHGQLAENAFEHFTFDKLFIGTDGIDLNAGVTTFNEVYTVSKAMCNAAREIILMADSSKFG 212 (256)
T ss_pred CCCCEEEEECCEEeCCCCeEECHHHHHHHHhCcCCEEEEcCceecCCCCcCCCCHHHHHHHHHHHHcCcEEEEECCcccC
Confidence 22 454433 223333456778999999999999988776532222445555556788999999999997
Q ss_pred C
Q 017293 295 L 295 (374)
Q Consensus 295 ~ 295 (374)
.
T Consensus 213 ~ 213 (256)
T PRK10434 213 R 213 (256)
T ss_pred C
Confidence 4
No 22
>PRK00702 ribose-5-phosphate isomerase A; Provisional
Probab=97.04 E-value=0.0097 Score=55.68 Aligned_cols=126 Identities=17% Similarity=0.102 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCC---eeEEEEecCCCCCcchHhHHHHHh
Q 017293 149 TNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGV---LERAYCSETRPFNQGSRLTAFELV 225 (374)
Q Consensus 149 a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~---~~~V~v~EsrP~~eG~~l~a~~L~ 225 (374)
..++|++.++++|. +|++|..-+ | +|+..+++...+..+ +++++ -+ .. .++..|.
T Consensus 6 ~K~~IA~~Aa~lI~-----dg~~IgLgs--G-------ST~~~l~~~L~~~~~~~~~itvV--t~-----S~-~~a~~l~ 63 (220)
T PRK00702 6 LKKAAAEAAAEYVE-----DGMIVGLGT--G-------STAAYFIDALGERVKEGLIIGGV--PT-----SE-ASTELAK 63 (220)
T ss_pred HHHHHHHHHHHhCC-----CCCEEEECC--c-------HHHHHHHHHHHhhhccCCCEEEE--CC-----cH-HHHHHHH
Confidence 45678889999999 888887643 2 477767666643221 34443 11 11 2355677
Q ss_pred hCCCCeEEEcchHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHH--HHHHHhcCCeEEEeccCccccCCCCCCCcc
Q 017293 226 HDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSL--ALCAKFHNILFYVAAPLTSIDLTLSSGQEI 303 (374)
Q Consensus 226 ~~GI~vtlI~Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~l--A~~Ak~~~vPvyV~a~~~K~~~~~~~~~~i 303 (374)
+.||++..+.+ + .++|..|.|||.|-.+++++---|-..+ -++|+.-+ -+++++.+.||..... ...+
T Consensus 64 ~~gi~v~~l~~------~--~~iD~afdGaD~vd~~~~~ikg~g~a~~~ekiva~~A~-~~vil~D~sK~v~~lg-~~~l 133 (220)
T PRK00702 64 ELGIPLFDLNE------V--DSLDLYVDGADEIDPHLNLIKGGGAALTREKIVAAAAK-RFICIVDESKLVDVLG-KFPL 133 (220)
T ss_pred hCCCeEEcHHH------C--CccCEEEECCCeECCCCCcEECcHHHHHHHHHHHHhcC-cEEEEEEcchhhhhcC-CCCc
Confidence 78998762111 2 5899999999999988876665443333 34444433 5889999999976543 2345
Q ss_pred ccc
Q 017293 304 VIE 306 (374)
Q Consensus 304 ~ie 306 (374)
|+|
T Consensus 134 PvE 136 (220)
T PRK00702 134 PVE 136 (220)
T ss_pred cEE
Confidence 555
No 23
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=97.01 E-value=0.013 Score=51.99 Aligned_cols=125 Identities=16% Similarity=0.182 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhC
Q 017293 148 ATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHD 227 (374)
Q Consensus 148 ~a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~ 227 (374)
+..++|++.++++|. +|++|.-=+ | +|+..+.+...+. ++++|+- =+ .. .+.+|.+.
T Consensus 4 ~~K~~IA~~A~~~I~-----~~~~Ifld~--G-------tT~~~la~~L~~~-~~ltVvT-ns------l~-ia~~l~~~ 60 (161)
T PF00455_consen 4 EEKRAIARKAASLIE-----DGDTIFLDS--G-------TTTLELAKYLPDK-KNLTVVT-NS------LP-IANELSEN 60 (161)
T ss_pred HHHHHHHHHHHHhCC-----CCCEEEEEC--c-------hHHHHHHHHhhcC-CceEEEE-CC------HH-HHHHHHhc
Confidence 345689999999999 888887653 2 4667666665432 2555552 11 12 24456554
Q ss_pred -CCCeEEE-----------cchHHHHHHhcCCCCEEEEcceeeecCCCe-ecccccHHHHHHHHhcCCeEEEeccCcccc
Q 017293 228 -RIPATLI-----------ADSAAAALMKDGRVSAVIVGADRVAANGDT-ANKIGTYSLALCAKFHNILFYVAAPLTSID 294 (374)
Q Consensus 228 -GI~vtlI-----------~Dsav~~~m~~~~vd~VlvGAd~i~~nG~v-~nkiGT~~lA~~Ak~~~vPvyV~a~~~K~~ 294 (374)
++++.++ .....-..+++-++|+.++|+++|..++++ .....-..+--..-.+..-+|+++++.||.
T Consensus 61 ~~~~vi~~GG~~~~~~~~~~G~~a~~~l~~~~~d~afi~~~gi~~~~G~~~~~~~~a~vk~~~~~~s~~~ill~D~sKf~ 140 (161)
T PF00455_consen 61 PNIEVILLGGEVNPKSLSFVGPIALEALRQFRFDKAFIGADGISEEGGLTTSDEEEAEVKRAMIENSKQVILLADSSKFG 140 (161)
T ss_pred CceEEEEeCCEEEcCCCcEECchHHHHHHhhccceEEecccEecCCCccccchHHHHHHHHHHHHhcCeEEEEeChhhcC
Confidence 3443332 122333455678999999999999996555 466666666667777788999999999997
Q ss_pred C
Q 017293 295 L 295 (374)
Q Consensus 295 ~ 295 (374)
.
T Consensus 141 ~ 141 (161)
T PF00455_consen 141 R 141 (161)
T ss_pred C
Confidence 4
No 24
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=96.84 E-value=0.021 Score=54.32 Aligned_cols=123 Identities=14% Similarity=0.009 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhh-
Q 017293 148 ATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVH- 226 (374)
Q Consensus 148 ~a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~- 226 (374)
...+.|++.++++|. +|++|..-+ | +|++.+.+.... ++++|+. =| ... +..|.+
T Consensus 78 ~~K~~IA~~Aa~~I~-----~g~~Ifld~--G-------sT~~~la~~L~~--~~ltVvT-ns------l~i-a~~l~~~ 133 (251)
T PRK13509 78 DEKVRIAKAASQLCN-----PGESVVINC--G-------STAFLLGRELCG--KPVQIIT-NY------LPL-ANYLIDQ 133 (251)
T ss_pred HHHHHHHHHHHHhCC-----CCCEEEECC--c-------HHHHHHHHHhCC--CCeEEEe-CC------HHH-HHHHHhC
Confidence 345789999999999 899998764 2 467766666533 2455552 11 122 334543
Q ss_pred CCCCeEE-----------EcchHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccCccccC
Q 017293 227 DRIPATL-----------IADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDL 295 (374)
Q Consensus 227 ~GI~vtl-----------I~Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~K~~~ 295 (374)
.++++.+ +.... ...+++-.+|+.++||++|-.+|-.........+--.+-....-+|++|++.||..
T Consensus 134 ~~~~v~l~GG~~~~~~~~~~G~~-~~~l~~~~~d~aFig~~gi~~~G~~~~~~~e~~~k~~~~~~s~~~illaDssKfg~ 212 (251)
T PRK13509 134 EHDSVIIMGGQYNKSQSITLSPQ-GSENSLYAGHWMFTSGKGLTADGLYKTDMLTAMAEQKMLSVVGKLVVLVDSSKIGE 212 (251)
T ss_pred CCCEEEEECCeEcCCcceeECHH-HHHHHhCcCCEEEECCCcCCCCcCCCCCHHHHHHHHHHHHHhCcEEEEEcccccCc
Confidence 2333332 22333 35677788999999999998776433444444444455556778899999999974
No 25
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=96.71 E-value=0.058 Score=51.92 Aligned_cols=125 Identities=12% Similarity=0.143 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhh-
Q 017293 148 ATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVH- 226 (374)
Q Consensus 148 ~a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~- 226 (374)
...++|++.++++|. +|++|+.=+ | +|+..+.+.... .++++|+.- +.. .+..|.+
T Consensus 91 ~~K~~IA~~Aa~~I~-----dgd~Ifld~--G-------tT~~~la~~L~~-~~~ltVvTn-------sl~-ia~~l~~~ 147 (269)
T PRK09802 91 AMKRSVAKAAVELIQ-----PGHRVILDS--G-------TTTFEIARLMRK-HTDVIAMTN-------GMN-VANALLEA 147 (269)
T ss_pred HHHHHHHHHHHhhCC-----CCCEEEECC--c-------hHHHHHHHhcCc-CCCeEEEeC-------CHH-HHHHHHhC
Confidence 345689999999999 899998753 2 466666666532 335666631 122 2445653
Q ss_pred CCCCeEEE-----------cchHHHHHHhcCCCCEEEEcceeeecCCCee-cccccHHHHHHHHhcCCeEEEeccCcccc
Q 017293 227 DRIPATLI-----------ADSAAAALMKDGRVSAVIVGADRVAANGDTA-NKIGTYSLALCAKFHNILFYVAAPLTSID 294 (374)
Q Consensus 227 ~GI~vtlI-----------~Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~-nkiGT~~lA~~Ak~~~vPvyV~a~~~K~~ 294 (374)
.++++.++ .....-..+++-++|+.|+||++|-.++++. ...--..+--++-....-+|+++++.||.
T Consensus 148 ~~~~v~llGG~~~~~~~~~~G~~a~~~l~~~~~d~afig~~gi~~~~G~t~~~~~ea~~kr~~i~~s~~~ill~D~sKf~ 227 (269)
T PRK09802 148 EGVELLMTGGHLRRQSQSFYGDQAEQSLQNYHFDMLFLGVDAIDLERGVSTHNEDEARLNRRMCEVAERIIVVTDSSKFN 227 (269)
T ss_pred CCCEEEEECCEEecCCCceECHHHHHHHHhccCCEEEEcCceecCCCCcCCCCHHHHHHHHHHHHHcCcEEEEEeccccC
Confidence 46665543 2333444567789999999999998877764 34444555556666677789999999996
Q ss_pred C
Q 017293 295 L 295 (374)
Q Consensus 295 ~ 295 (374)
.
T Consensus 228 ~ 228 (269)
T PRK09802 228 R 228 (269)
T ss_pred C
Confidence 3
No 26
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=96.32 E-value=0.15 Score=48.21 Aligned_cols=124 Identities=10% Similarity=0.092 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhh-
Q 017293 148 ATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVH- 226 (374)
Q Consensus 148 ~a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~- 226 (374)
...+.|++.++++|. +|++|..-+ | +|+..+.+.... +.++|+. = ... .+.+|..
T Consensus 78 ~~K~~IA~~Aa~lI~-----~gd~Ifld~--G-------tT~~~l~~~L~~--~~ltVvT-N------s~~-ia~~l~~~ 133 (240)
T PRK10411 78 AHKADIAREALAWIE-----EGMVIALDA--S-------STCWYLARQLPD--INIQVFT-N------SHP-ICQELGKR 133 (240)
T ss_pred HHHHHHHHHHHHhCC-----CCCEEEEcC--c-------HHHHHHHHhhCC--CCeEEEe-C------CHH-HHHHHhcC
Confidence 455789999999999 899988754 1 466666665532 2455552 1 111 2344542
Q ss_pred CCCCeEEE-----------cchHHHHHHhcCCCCEEEEcceeeecCCCeec-ccccHHHHHHHHhcCCeEEEeccCcccc
Q 017293 227 DRIPATLI-----------ADSAAAALMKDGRVSAVIVGADRVAANGDTAN-KIGTYSLALCAKFHNILFYVAAPLTSID 294 (374)
Q Consensus 227 ~GI~vtlI-----------~Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~n-kiGT~~lA~~Ak~~~vPvyV~a~~~K~~ 294 (374)
.++.+.++ .....-..+++-++|+.++|+++|..+|++.. ..=...+--.+-....-+|+++++.||.
T Consensus 134 ~~~~vil~GG~~~~~~~~~~G~~a~~~l~~~~~d~afis~~gi~~~~G~~~~~~~ea~~k~~~~~~a~~~ill~D~sKf~ 213 (240)
T PRK10411 134 ERIQLISSGGTLERKYGCYVNPSLISQLKSLEIDLFIFSCEGIDSSGALWDSNAINADYKSMLLKRAAQSLLLIDKSKFN 213 (240)
T ss_pred CCCEEEEECCEEeCCCCceECHHHHHHHHhcCCCEEEEeceeECCCCCcccCCHHHHHHHHHHHHHhCcEEEEEeccccC
Confidence 34444322 23333444667799999999999987766653 3334455555566777889999999997
Q ss_pred C
Q 017293 295 L 295 (374)
Q Consensus 295 ~ 295 (374)
.
T Consensus 214 ~ 214 (240)
T PRK10411 214 R 214 (240)
T ss_pred C
Confidence 3
No 27
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=96.26 E-value=0.14 Score=48.77 Aligned_cols=125 Identities=13% Similarity=0.071 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhh-
Q 017293 148 ATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVH- 226 (374)
Q Consensus 148 ~a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~- 226 (374)
...++|++.++++|. +|++|+.-+- +|++.+.+.... .++++|+ +-| .. .+.+|..
T Consensus 76 ~~K~~IA~~Aa~~I~-----~g~tIflD~G---------tT~~~la~~L~~-~~~ltVv-TNs------l~-ia~~l~~~ 132 (252)
T PRK10906 76 EEKERIARKVASQIP-----NGATLFIDIG---------TTPEAVAHALLN-HSNLRIV-TNN------LN-VANTLMAK 132 (252)
T ss_pred HHHHHHHHHHHhhCC-----CCCEEEEcCc---------HHHHHHHHHhcC-CCCcEEE-ECc------HH-HHHHHhhC
Confidence 345789999999999 8999987642 466666666533 2345554 222 11 2344543
Q ss_pred CCCCeEEE-----------cchHHHHHHhcCCCCEEEEcceeeecCCCe-ecccccHHHHHHHHhcCCeEEEeccCcccc
Q 017293 227 DRIPATLI-----------ADSAAAALMKDGRVSAVIVGADRVAANGDT-ANKIGTYSLALCAKFHNILFYVAAPLTSID 294 (374)
Q Consensus 227 ~GI~vtlI-----------~Dsav~~~m~~~~vd~VlvGAd~i~~nG~v-~nkiGT~~lA~~Ak~~~vPvyV~a~~~K~~ 294 (374)
.++++.++ .....-..+++-.+|+.|+|+++|-.+|++ .+...-..+--.+-....-+|++|++.||.
T Consensus 133 ~~~~villGG~~~~~~~~~~G~~a~~~l~~~~~d~afi~~~Gi~~~~G~t~~~~~ea~~k~~~~~~a~~~illaD~sKf~ 212 (252)
T PRK10906 133 EDFRIILAGGELRSRDGGIIGEATLDFISQFRLDFGILGISGIDSDGSLLEFDYHEVRTKRAIIENSRHVMLVVDHSKFG 212 (252)
T ss_pred CCCEEEEECCEEecCCCccCCHHHHHHHHhccCCEEEEcCCEECCCCCcCCCCHHHHHHHHHHHHhcCcEEEEEccchhC
Confidence 34444332 222333456678899999999999977665 455555556656666677889999999996
Q ss_pred C
Q 017293 295 L 295 (374)
Q Consensus 295 ~ 295 (374)
.
T Consensus 213 ~ 213 (252)
T PRK10906 213 R 213 (252)
T ss_pred C
Confidence 4
No 28
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=96.05 E-value=0.21 Score=47.58 Aligned_cols=124 Identities=14% Similarity=0.135 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhC-
Q 017293 149 TNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHD- 227 (374)
Q Consensus 149 a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~- 227 (374)
.-..|++.++++|. +|++|+--|- +|.+.+.+.... .++++|+. = +... +..|...
T Consensus 77 eK~~IA~~Aa~lI~-----~g~~ifld~G---------TT~~~la~~L~~-~~~ltviT-N------sl~i-a~~l~~~~ 133 (253)
T COG1349 77 EKRAIAKAAATLIE-----DGDTIFLDAG---------TTTLALARALPD-DNNLTVIT-N------SLNI-AAALLEKP 133 (253)
T ss_pred HHHHHHHHHHhhCC-----CCCEEEECCC---------cHHHHHHHHhCc-CCCeEEEe-C------CHHH-HHHHHhCC
Confidence 45679999999999 8999887652 366665555533 23355552 1 2232 3455544
Q ss_pred CCCe-----------EEEcchHHHHHHhcCCCCEEEEcceeeecCCCeeccc-ccHHHHHHHHhcCCeEEEeccCccccC
Q 017293 228 RIPA-----------TLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKI-GTYSLALCAKFHNILFYVAAPLTSIDL 295 (374)
Q Consensus 228 GI~v-----------tlI~Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~nki-GT~~lA~~Ak~~~vPvyV~a~~~K~~~ 295 (374)
++.+ --+.....-..+++-.+|+.++|+++|-.++++...- .-..+.-.+-....-+|+++.+.||..
T Consensus 134 ~~~vi~~GG~~~~~~~~~~G~~a~~~l~~~~~d~aFig~~gi~~~~g~~~~~~~ea~~k~~~~~~a~~~~ll~D~sKf~~ 213 (253)
T COG1349 134 NIEVILLGGTVRKKSGSFVGPLAEEFLRQFNFDKAFIGADGIDLEGGLTTFNEEEAEVKRAMIEAAREVILLADSSKFGR 213 (253)
T ss_pred CCeEEEeCcEEEcCCCeEEcHHHHHHHHhCcccEEEEeccccCCCCCcCcCCHHHHHHHHHHHHhhCcEEEEEcCCccCC
Confidence 3333 1233444556677889999999999999887776543 444455555567788889999999874
No 29
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional
Probab=95.47 E-value=0.39 Score=45.71 Aligned_cols=124 Identities=11% Similarity=0.092 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhh-C
Q 017293 149 TNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVH-D 227 (374)
Q Consensus 149 a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~-~ 227 (374)
..++|++.++++|. +|++|+.=+- +|++.+.+.... .++++|+- -| .. .+.+|.+ .
T Consensus 78 ~K~~IA~~Aa~lI~-----~g~tIflD~G---------tT~~~la~~L~~-~~~ltvvT-ns------l~-i~~~l~~~~ 134 (252)
T PRK10681 78 EKRRAAQLAATLVE-----PNQTLFFDCG---------TTTPWIIEAIDN-ELPFTAVC-YS------LN-TFLALQEKP 134 (252)
T ss_pred HHHHHHHHHHhhcC-----CCCEEEEECC---------ccHHHHHHhcCC-CCCeEEEE-CC------HH-HHHHHhhCC
Confidence 45789999999999 8999987642 467766666532 22455552 11 11 2345553 3
Q ss_pred CCCeEEE-----------cchHHHHHHhcCCCCEEEEcceeeecCCCee-cccccHHHHHHHHhcCCeEEEeccCccccC
Q 017293 228 RIPATLI-----------ADSAAAALMKDGRVSAVIVGADRVAANGDTA-NKIGTYSLALCAKFHNILFYVAAPLTSIDL 295 (374)
Q Consensus 228 GI~vtlI-----------~Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~-nkiGT~~lA~~Ak~~~vPvyV~a~~~K~~~ 295 (374)
++++.++ .....-..+++-.+|+.++|+++|-..+++. ...--..+.-+.-....-+|++|.+.||..
T Consensus 135 ~~~villGG~~~~~~~~~~G~~~~~~l~~~~~D~afig~~gi~~~~G~~~~~~~ea~vk~~~~~~a~~~illaD~sKf~~ 214 (252)
T PRK10681 135 HCRAILCGGEFHASNAIFKPLDFQQTLDNICPDIAFYSAAGVHVSKGATCFNLEELPVKHWAMAMAQKHVLVVDHSKFGK 214 (252)
T ss_pred CCEEEEECcEEecCcceeeCHHHHHHHHhhCCCEEEEeCceecCCCCcCCCCHHHHHHHHHHHHhhCcEEEEEcccccCc
Confidence 4444332 1222234556789999999999998776553 444445555555556777899999999963
No 30
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=93.48 E-value=0.74 Score=38.13 Aligned_cols=83 Identities=16% Similarity=0.145 Sum_probs=59.1
Q ss_pred HHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEc------chHHHHHHhc-CCCCEEEEcceeeecCCC
Q 017293 191 GVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIA------DSAAAALMKD-GRVSAVIVGADRVAANGD 263 (374)
Q Consensus 191 ~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~------Dsav~~~m~~-~~vd~VlvGAd~i~~nG~ 263 (374)
.+.+...+ ..|++|.+++ |++.|.+.||+|+.+. +..+...+++ +++|+||-=. +|.
T Consensus 16 ~~a~~l~~--~G~~i~AT~g---------Ta~~L~~~Gi~~~~v~~~~~~g~~~i~~~i~~~g~idlVIn~~-----~~~ 79 (112)
T cd00532 16 DLAPKLSS--DGFPLFATGG---------TSRVLADAGIPVRAVSKRHEDGEPTVDAAIAEKGKFDVVINLR-----DPR 79 (112)
T ss_pred HHHHHHHH--CCCEEEECcH---------HHHHHHHcCCceEEEEecCCCCCcHHHHHHhCCCCEEEEEEcC-----CCC
Confidence 34444443 4588898864 5778999999998862 3557778888 8999997543 333
Q ss_pred e--ecccccHHHHHHHHhcCCeEEEecc
Q 017293 264 T--ANKIGTYSLALCAKFHNILFYVAAP 289 (374)
Q Consensus 264 v--~nkiGT~~lA~~Ak~~~vPvyV~a~ 289 (374)
- -.....+.+=.+|-.++||++--..
T Consensus 80 ~~~~~~~dg~~iRR~A~~~~Ip~~T~~~ 107 (112)
T cd00532 80 RDRCTDEDGTALLRLARLYKIPVTTPNA 107 (112)
T ss_pred cccccCCChHHHHHHHHHcCCCEEECHH
Confidence 2 0255678888899999999986433
No 31
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=93.25 E-value=0.22 Score=40.01 Aligned_cols=80 Identities=23% Similarity=0.266 Sum_probs=54.7
Q ss_pred HHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCC----eEEEcch---H----HHHHHhcCCCCEEEEcceee
Q 017293 190 LGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP----ATLIADS---A----AAALMKDGRVSAVIVGADRV 258 (374)
Q Consensus 190 ~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~----vtlI~Ds---a----v~~~m~~~~vd~VlvGAd~i 258 (374)
+.+.+...+.| +++|.+++ |++.|.+.||+ +.++... . +..+|+.+++|+||.=.
T Consensus 3 ~~~a~~l~~lG--~~i~AT~g---------Ta~~L~~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~~--- 68 (95)
T PF02142_consen 3 VPLAKRLAELG--FEIYATEG---------TAKFLKEHGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINTP--- 68 (95)
T ss_dssp HHHHHHHHHTT--SEEEEEHH---------HHHHHHHTT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE----
T ss_pred HHHHHHHHHCC--CEEEEChH---------HHHHHHHcCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEeC---
Confidence 34556666666 89998874 68889999999 4444444 2 77888999999997533
Q ss_pred ecCCCeecc-cccHHHHHHHHhcCCeEE
Q 017293 259 AANGDTANK-IGTYSLALCAKFHNILFY 285 (374)
Q Consensus 259 ~~nG~v~nk-iGT~~lA~~Ak~~~vPvy 285 (374)
++.--.. ...+.+--+|-.++||.+
T Consensus 69 --~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 69 --YPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp ---THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred --CCCcccccCCcHHHHHHHHHcCCCCc
Confidence 2222222 378999999999999975
No 32
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=91.41 E-value=2.8 Score=34.28 Aligned_cols=81 Identities=19% Similarity=0.265 Sum_probs=57.2
Q ss_pred HHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEc-----chHHHHHHhcCCCCEEEEcceeeecCCCe
Q 017293 190 LGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIA-----DSAAAALMKDGRVSAVIVGADRVAANGDT 264 (374)
Q Consensus 190 ~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~-----Dsav~~~m~~~~vd~VlvGAd~i~~nG~v 264 (374)
..+.+..++ ..+++|.+++ |++.|.+.|++|+.+. +..+...++++++|.|+--.+ +.-
T Consensus 16 ~~~~~~l~~--~G~~l~aT~g---------T~~~l~~~gi~~~~v~~~~~~~~~i~~~i~~~~id~vIn~~~-----~~~ 79 (110)
T cd01424 16 VEIAKRLAE--LGFKLVATEG---------TAKYLQEAGIPVEVVNKVSEGRPNIVDLIKNGEIQLVINTPS-----GKR 79 (110)
T ss_pred HHHHHHHHH--CCCEEEEchH---------HHHHHHHcCCeEEEEeecCCCchhHHHHHHcCCeEEEEECCC-----CCc
Confidence 344455554 3588887763 5777999999987763 356777778899999987643 221
Q ss_pred ecccccHHHHHHHHhcCCeEEEe
Q 017293 265 ANKIGTYSLALCAKFHNILFYVA 287 (374)
Q Consensus 265 ~nkiGT~~lA~~Ak~~~vPvyV~ 287 (374)
..-..|.+=.+|-.||||++-.
T Consensus 80 -~~~~~~~iRR~Av~~~ipl~T~ 101 (110)
T cd01424 80 -AIRDGFSIRRAALEYKVPYFTT 101 (110)
T ss_pred -cCccHHHHHHHHHHhCCCEEec
Confidence 1234578889999999999843
No 33
>PLN02384 ribose-5-phosphate isomerase
Probab=90.86 E-value=4.7 Score=38.80 Aligned_cols=126 Identities=19% Similarity=0.113 Sum_probs=73.7
Q ss_pred HHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCC--eeE-EEEecCCCCCcchHhHHHHHhhCCC
Q 017293 153 IGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGV--LER-AYCSETRPFNQGSRLTAFELVHDRI 229 (374)
Q Consensus 153 I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~--~~~-V~v~EsrP~~eG~~l~a~~L~~~GI 229 (374)
.+..++++++ +|.+|=. + || ||+.-+++...+..+ .++ +.+.-|. ..|+..+.+.||
T Consensus 39 aA~~A~~~V~-----~gmvVGL-G-TG-------STv~~~I~~La~r~~~~~l~~I~~VpTS------~~T~~~a~~~GI 98 (264)
T PLN02384 39 AAYKAVEFVE-----SGMVLGL-G-TG-------STAKHAVDRIGELLRQGKLKNIIGIPTS------KKTHEQAVSLGI 98 (264)
T ss_pred HHHHHHHhcc-----CCCEEEe-c-ch-------HHHHHHHHHHHHhhhhccccceEEEcCc------HHHHHHHHHcCC
Confidence 4455677888 7776533 2 22 466656655443222 122 3333221 234556678899
Q ss_pred CeEEEcchHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHH--HHHHhcCCeEEEeccCccccCCCCC-CCccccc
Q 017293 230 PATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLA--LCAKFHNILFYVAAPLTSIDLTLSS-GQEIVIE 306 (374)
Q Consensus 230 ~vtlI~Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA--~~Ak~~~vPvyV~a~~~K~~~~~~~-~~~i~ie 306 (374)
|++-+.+ . .++|..|=|||-|-+|+.++=-=|...+- ++|. ...-|++++...|+...... ...+|+|
T Consensus 99 pl~~l~~------v--~~iDiaiDGADEId~~lnlIKGGGgallrEKivA~-~A~~~IiI~DesK~V~~Lg~~~~plPVE 169 (264)
T PLN02384 99 PLSDLDS------H--PVVDLAIDGADEVDPNLNLVKGRGGSLLREKMIEG-ACKKFVVIVDESKLVKHIGGSGLAMPVE 169 (264)
T ss_pred cEecccc------C--CcccEEEECCceeCCCCCEEEeCcHHHHHHHHHHH-hcCeEEEEEeCcceecccCCCCCCEEEE
Confidence 9776644 3 78999999999999887666444432211 1222 33478999999999764321 2246666
Q ss_pred c
Q 017293 307 E 307 (374)
Q Consensus 307 ~ 307 (374)
-
T Consensus 170 V 170 (264)
T PLN02384 170 V 170 (264)
T ss_pred E
Confidence 3
No 34
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=90.48 E-value=2.7 Score=33.12 Aligned_cols=79 Identities=20% Similarity=0.104 Sum_probs=53.3
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeE-EEc---c--hHHHHHHhcCCCCEEEEcceeeecCCCee
Q 017293 192 VIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPAT-LIA---D--SAAAALMKDGRVSAVIVGADRVAANGDTA 265 (374)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vt-lI~---D--sav~~~m~~~~vd~VlvGAd~i~~nG~v~ 265 (374)
+.+..++. .+++|.+++ |++.|.+.||+|. ++. + ..+...++++++|+||.=.+. .|...
T Consensus 5 ~~~~l~~l--G~~i~AT~g---------Ta~~L~~~Gi~~~~~~~ki~~~~~~i~~~i~~g~id~VIn~~~~---~~~~~ 70 (90)
T smart00851 5 LAKRLAEL--GFELVATGG---------TAKFLREAGLPVKTLHPKVHGGILAILDLIKNGEIDLVINTLYP---LGAQP 70 (90)
T ss_pred HHHHHHHC--CCEEEEccH---------HHHHHHHCCCcceeccCCCCCCCHHHHHHhcCCCeEEEEECCCc---Cccee
Confidence 44555544 588888774 4677899999985 432 1 225666778999999875432 23333
Q ss_pred cccccHHHHHHHHhcCCeEE
Q 017293 266 NKIGTYSLALCAKFHNILFY 285 (374)
Q Consensus 266 nkiGT~~lA~~Ak~~~vPvy 285 (374)
.+ -.+.+=.+|-.++||++
T Consensus 71 ~~-d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 71 HE-DGKALRRAAENIDIPGA 89 (90)
T ss_pred cc-CcHHHHHHHHHcCCCee
Confidence 33 56778889999999975
No 35
>PRK13978 ribose-5-phosphate isomerase A; Provisional
Probab=89.65 E-value=6 Score=37.29 Aligned_cols=126 Identities=18% Similarity=0.014 Sum_probs=73.7
Q ss_pred HHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCC--CeeEEEEecCCCCCcchHhHHHHHhhCCC
Q 017293 152 AIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEG--VLERAYCSETRPFNQGSRLTAFELVHDRI 229 (374)
Q Consensus 152 ~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g--~~~~V~v~EsrP~~eG~~l~a~~L~~~GI 229 (374)
..+..++++++ +|.+|= .+ || ||+.-+++...+.. ..+++.+. |..+ -|+..+.+.||
T Consensus 10 ~aa~~A~~~V~-----~gmvvG-LG-TG-------STv~~~i~~L~~~~~~~~l~i~~V---ptS~---~t~~~a~~~Gi 69 (228)
T PRK13978 10 MTLNDVLSQIN-----GDMTLG-IG-TG-------STMELLLPQMAQLIKERGYNITGV---CTSN---KIAFLAKELGI 69 (228)
T ss_pred HHHHHHHHhCC-----CCCEEE-eC-ch-------HHHHHHHHHHHHHhhccCccEEEE---eCcH---HHHHHHHHcCC
Confidence 35566788888 776643 22 22 46665665543321 12344433 2222 23445668899
Q ss_pred CeEEEcchHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHH--HHHhcCCeEEEeccCccccCCCCCCCccccc
Q 017293 230 PATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLAL--CAKFHNILFYVAAPLTSIDLTLSSGQEIVIE 306 (374)
Q Consensus 230 ~vtlI~Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~--~Ak~~~vPvyV~a~~~K~~~~~~~~~~i~ie 306 (374)
|+.-+.+ . .++|..|=|||-|-+|+.++ |=|-..+-. +-.....-|++++...|+.........+|+|
T Consensus 70 pl~~l~~------~--~~iDiaiDGADevd~~lnlI-KGgGgal~rEKiva~~A~~~iii~D~sK~v~~Lg~~~plPVE 139 (228)
T PRK13978 70 KICEIND------V--DHIDLAIDGADEVDPSLNII-KGGGGALFREKVIDEMASRFVVVVDETKIVQYLGETFKLPVE 139 (228)
T ss_pred cEechhh------C--CceeEEEecCceecCCccEE-ecCcHHHHHHHHHHHhcCcEEEEEeCcceecccCCCCCeEEE
Confidence 9766544 2 68999999999999998776 444432221 1122334788888889997543222245665
No 36
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=89.59 E-value=1.4 Score=36.57 Aligned_cols=78 Identities=26% Similarity=0.296 Sum_probs=53.5
Q ss_pred HHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcc---------hHHHHHHhcCCCCEEEE----cc
Q 017293 189 ALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIAD---------SAAAALMKDGRVSAVIV----GA 255 (374)
Q Consensus 189 v~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~D---------sav~~~m~~~~vd~Vlv----GA 255 (374)
...+.+..++. .|++|.+++ |++.|.+.|++|+.+.. ..+--+++++++|.||- |.
T Consensus 15 ~~~~a~~l~~~--G~~i~aT~g---------Ta~~L~~~gi~~~~v~~~~~~~~~~~~~i~~~i~~~~idlVIn~~~~~~ 83 (116)
T cd01423 15 LLPTAQKLSKL--GYKLYATEG---------TADFLLENGIPVTPVAWPSEEPQNDKPSLRELLAEGKIDLVINLPSNRG 83 (116)
T ss_pred HHHHHHHHHHC--CCEEEEccH---------HHHHHHHcCCCceEeeeccCCCCCCchhHHHHHHcCCceEEEECCCCCC
Confidence 34455555554 588887663 57889999999988732 44666677899999986 33
Q ss_pred eeeecCCCeecccccHHHHHHHHhcCCeEE
Q 017293 256 DRVAANGDTANKIGTYSLALCAKFHNILFY 285 (374)
Q Consensus 256 d~i~~nG~v~nkiGT~~lA~~Ak~~~vPvy 285 (374)
+....+| |.+=..|-.++||++
T Consensus 84 ~~~~~~~--------~~iRr~Av~~~ip~i 105 (116)
T cd01423 84 KRVLDND--------YVMRRAADDFAVPLI 105 (116)
T ss_pred CccccCc--------EeeehhhHhhCCccc
Confidence 3222333 555667889999996
No 37
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=88.29 E-value=11 Score=35.55 Aligned_cols=125 Identities=20% Similarity=0.106 Sum_probs=78.8
Q ss_pred HHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHH--CCCeeEEEEecCCCCCcchHhHHHHHhhCCC
Q 017293 152 AIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHS--EGVLERAYCSETRPFNQGSRLTAFELVHDRI 229 (374)
Q Consensus 152 ~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~--~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI 229 (374)
..+..+++++. ++.+|=. + || ||+..+++.+.+ ++. +.+...-|. .-++..+.+.||
T Consensus 9 ~aa~~A~~~v~-----~gmviGl-G-TG-------ST~~~fI~~Lg~~~~~e-~~i~~V~TS------~~t~~l~~~~GI 67 (227)
T COG0120 9 AAAKAALEYVK-----DGMVIGL-G-TG-------STAAYFIEALGRRVKGE-LDIGGVPTS------FQTEELARELGI 67 (227)
T ss_pred HHHHHHHHHhc-----CCCEEEE-c-Cc-------HHHHHHHHHHHHhhccC-ccEEEEeCC------HHHHHHHHHcCC
Confidence 44566788888 6655543 3 23 588888877752 222 333333322 124566889999
Q ss_pred CeEEEcchHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHH-HHHHhcCCeEEEeccCccccCCCCCCCccccc
Q 017293 230 PATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLA-LCAKFHNILFYVAAPLTSIDLTLSSGQEIVIE 306 (374)
Q Consensus 230 ~vtlI~Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA-~~Ak~~~vPvyV~a~~~K~~~~~~~~~~i~ie 306 (374)
|+.-+.+ . ..+|..|=|||-|-+++..+--=|...+= =+-.+..+-|+|++...|+....- ...+|+|
T Consensus 68 ~v~~l~~------~--~~lDl~iDGADEvd~~~~lIKGGGgAl~rEKIva~~ak~~IvIvDesKlV~~LG-~fplPVE 136 (227)
T COG0120 68 PVSSLNE------V--DSLDLAIDGADEVDPNLNLIKGGGGALLREKIVASAAKRFIVIVDESKLVEVLG-KFPLPVE 136 (227)
T ss_pred eecCccc------c--CccceEeecccccCCCCCEEccChHHHHHHHHHHHhcCeEEEEEeCccchhhcC-CCCcCEE
Confidence 8877665 3 67999999999999998766444433221 133446778999999999965432 2335554
No 38
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=87.44 E-value=5.1 Score=34.88 Aligned_cols=89 Identities=17% Similarity=0.154 Sum_probs=58.8
Q ss_pred HHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhC-CCCeEEEc------chHHHHHHhcCCCCEEEEcceeeecC
Q 017293 189 ALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHD-RIPATLIA------DSAAAALMKDGRVSAVIVGADRVAAN 261 (374)
Q Consensus 189 v~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~-GI~vtlI~------Dsav~~~m~~~~vd~VlvGAd~i~~n 261 (374)
++.+.+...+.=..|++|.+++ |++.|.+. |++|+.+. +..+...++++++|+||-=.|-.
T Consensus 19 l~~~a~~l~~ll~Gf~l~AT~g---------Ta~~L~~~~Gi~v~~vi~~~~gg~~~i~~~I~~g~i~lVInt~dp~--- 86 (142)
T PRK05234 19 LVAWVKAHKDLLEQHELYATGT---------TGGLIQEATGLDVTRLLSGPLGGDQQIGALIAEGKIDMLIFFRDPL--- 86 (142)
T ss_pred HHHHHHHHHHHhcCCEEEEeCh---------HHHHHHhccCCeeEEEEcCCCCCchhHHHHHHcCceeEEEEecCCC---
Confidence 3445555554411478888774 57789999 99998763 23477778899999997544322
Q ss_pred CCeecccccHHHHHHHHhcCCeEEEecc
Q 017293 262 GDTANKIGTYSLALCAKFHNILFYVAAP 289 (374)
Q Consensus 262 G~v~nkiGT~~lA~~Ak~~~vPvyV~a~ 289 (374)
|.-......+.+=.+|-.||||++---.
T Consensus 87 ~~~~~~~D~~~IRR~Av~~~IP~~T~l~ 114 (142)
T PRK05234 87 TAQPHDPDVKALLRLADVWNIPVATNRA 114 (142)
T ss_pred CCCcccchHHHHHHHHHHcCCCEEcCHH
Confidence 2112133456788889999999986433
No 39
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=86.09 E-value=2 Score=41.43 Aligned_cols=106 Identities=19% Similarity=0.177 Sum_probs=71.2
Q ss_pred cccccccH-HHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCC----eEEEcchHHHHHHhcCCCCEEEEcce
Q 017293 182 ATAGYGTA-LGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP----ATLIADSAAAALMKDGRVSAVIVGAD 256 (374)
Q Consensus 182 at~g~~tv-~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~----vtlI~Dsav~~~m~~~~vd~VlvGAd 256 (374)
.|.|.|.+ ..+++.+.++|...+|.+.+-+|...-. ..+...++. .-+....++...| ..+|.|+--|.
T Consensus 2 VTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~----~~~~~~~~~~~~~~Di~d~~~l~~a~--~g~d~V~H~Aa 75 (280)
T PF01073_consen 2 VTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFL----KDLQKSGVKEYIQGDITDPESLEEAL--EGVDVVFHTAA 75 (280)
T ss_pred EEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccc----hhhhcccceeEEEeccccHHHHHHHh--cCCceEEEeCc
Confidence 45566765 4577888888865556666655443221 123333432 3333345667788 89999998887
Q ss_pred eeecCCC-------eecccccHHHHHHHHhcCCeEEEeccCccc
Q 017293 257 RVAANGD-------TANKIGTYSLALCAKFHNILFYVAAPLTSI 293 (374)
Q Consensus 257 ~i~~nG~-------v~nkiGT~~lA~~Ak~~~vPvyV~a~~~K~ 293 (374)
-+...|. -+|--||-.+.-+|+.++|+-+|.+.|.-.
T Consensus 76 ~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVytSS~~v 119 (280)
T PF01073_consen 76 PVPPWGDYPPEEYYKVNVDGTRNVLEAARKAGVKRLVYTSSISV 119 (280)
T ss_pred cccccCcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCcce
Confidence 7766661 357799999999999999999988776653
No 40
>COG2057 AtoA Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism]
Probab=84.98 E-value=4.7 Score=37.75 Aligned_cols=103 Identities=24% Similarity=0.345 Sum_probs=63.0
Q ss_pred HHhhCC-CCeEE-----EcchHHHHH-HhcCCCCEEEEcceeeecCCCeeccc----------ccHHHHHHHHhcCCeEE
Q 017293 223 ELVHDR-IPATL-----IADSAAAAL-MKDGRVSAVIVGADRVAANGDTANKI----------GTYSLALCAKFHNILFY 285 (374)
Q Consensus 223 ~L~~~G-I~vtl-----I~Dsav~~~-m~~~~vd~VlvGAd~i~~nG~v~nki----------GT~~lA~~Ak~~~vPvy 285 (374)
.|...| -+|+. ..|++.+.. ++-+++|.-++||=-|-++|++.|-+ |+--++.-|| + +|
T Consensus 68 ~linaG~~~vt~~pg~~~f~sa~sf~~irGGhidv~vLGa~QVd~~Gnlanw~Ipgk~vpGmGGAmdl~~gak---k-vi 143 (225)
T COG2057 68 DLINAGKQPVTALPGASVFDSADSFAMIRGGHIDVAVLGAAQVDEYGNLANWMIPGKMVPGMGGAMDLVTGAK---K-VI 143 (225)
T ss_pred chhhCCCceeEecCCceEEchHHHHHHHhCCceEEEEecceeecccCceeeeeECCccccCCccchhhhcCCc---E-EE
Confidence 355444 56666 567777554 56678999999999999999999864 3333333222 2 77
Q ss_pred EeccCccccCCCCCCCccccccCCcccceeccCCCCccccCCCceeecceeeecCCCCccEEEeCCCCcccCCCcC
Q 017293 286 VAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKQGVVTKAGAD 361 (374)
Q Consensus 286 V~a~~~K~~~~~~~~~~i~ie~r~~~ev~~~~~~~~~~~~~~~~~v~np~fD~tP~~lIt~iITE~~Gi~~p~~~~ 361 (374)
|.-+..|=+ +. + ++...+ .+=.|....++.||||+ |+|.+....
T Consensus 144 i~m~H~~k~-----g~--------~-ki~~~c-----------------tlplt~~~~v~~iiTdl-~V~~~~~~~ 187 (225)
T COG2057 144 VVMEHTKKS-----GV--------G-KILKEC-----------------TLPLTGNGCVDRVITDL-AVFEFDPGG 187 (225)
T ss_pred EEeeeeccc-----CC--------C-cccCcc-----------------cccccCCCCceEEEecc-EEEEecCCC
Confidence 765543321 11 0 111110 13346677788889998 888877554
No 41
>PRK09932 glycerate kinase II; Provisional
Probab=73.49 E-value=5.1 Score=40.60 Aligned_cols=50 Identities=22% Similarity=0.199 Sum_probs=38.5
Q ss_pred HHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccCcccc
Q 017293 241 ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSID 294 (374)
Q Consensus 241 ~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~K~~ 294 (374)
..| ..+|.||.|=-++ |.....--..+.+|-.|+.|+|||+++|.+...+
T Consensus 280 ~~l--~~ADlVITGEG~~--D~Qt~~GK~p~~Va~~A~~~~~Pvi~i~G~~~~~ 329 (381)
T PRK09932 280 QAV--QGAALVITGEGRI--DSQTAGGKAPLGVASVAKQFNVPVIGIAGVLGDG 329 (381)
T ss_pred HHh--ccCCEEEECCCcc--cccccCCccHHHHHHHHHHcCCCEEEEecccCCC
Confidence 557 8999999998766 3334444456788889999999999999986543
No 42
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=72.24 E-value=22 Score=29.57 Aligned_cols=74 Identities=18% Similarity=0.196 Sum_probs=50.0
Q ss_pred eeEEEEecCCCCCcchHhHHHHHhh-CCCCeEEEcc------hHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHH
Q 017293 202 LERAYCSETRPFNQGSRLTAFELVH-DRIPATLIAD------SAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLA 274 (374)
Q Consensus 202 ~~~V~v~EsrP~~eG~~l~a~~L~~-~GI~vtlI~D------sav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA 274 (374)
.|+++.+++ |++.|.+ .||+|+.+.- ..+...++++++|.||-=.+.. |.-....=.+.+=
T Consensus 27 Gf~i~AT~g---------Ta~~L~~~~Gi~v~~vk~~~~~g~~~i~~~i~~g~i~~VInt~~~~---~~~~~~~dg~~iR 94 (115)
T cd01422 27 RHRLVATGT---------TGLLIQEATGLTVNRMKSGPLGGDQQIGALIAEGEIDAVIFFRDPL---TAQPHEPDVKALL 94 (115)
T ss_pred CCEEEEech---------HHHHHHHhhCCcEEEEecCCCCchhHHHHHHHcCceeEEEEcCCCC---CCCcccccHHHHH
Confidence 567777664 5667888 8998887721 3366777889999997543321 3222133357888
Q ss_pred HHHHhcCCeEEEe
Q 017293 275 LCAKFHNILFYVA 287 (374)
Q Consensus 275 ~~Ak~~~vPvyV~ 287 (374)
..|-.++||++-.
T Consensus 95 r~a~~~~Ip~~Tt 107 (115)
T cd01422 95 RLCDVYNIPLATN 107 (115)
T ss_pred HHHHHcCCCEEEc
Confidence 8999999999853
No 43
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=69.55 E-value=6.9 Score=39.59 Aligned_cols=50 Identities=16% Similarity=0.067 Sum_probs=38.5
Q ss_pred HHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccCcccc
Q 017293 241 ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSID 294 (374)
Q Consensus 241 ~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~K~~ 294 (374)
..+ ...|.||.|==++ |.....--....+|-.|+.|+|||+++|.+...+
T Consensus 279 ~~l--~~ADlVITGEG~~--D~Qtl~GK~p~~Va~~A~~~~vPviai~G~v~~~ 328 (375)
T TIGR00045 279 QKI--KDADLVITGEGRL--DRQSLMGKAPVGVAKRAKKYGVPVIAIAGSLGDG 328 (375)
T ss_pred HHh--cCCCEEEECCCcc--cccccCCchHHHHHHHHHHhCCeEEEEecccCCC
Confidence 456 8999999997766 3333444467888899999999999999987544
No 44
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=67.64 E-value=26 Score=32.44 Aligned_cols=71 Identities=14% Similarity=0.205 Sum_probs=45.5
Q ss_pred ccccHHHHHHHHHHCCC-eeE-EEEecCCCCCcchHhHHHHHhhCCCCeEEEc----------chHHHHHHhcCCCCEEE
Q 017293 185 GYGTALGVIRALHSEGV-LER-AYCSETRPFNQGSRLTAFELVHDRIPATLIA----------DSAAAALMKDGRVSAVI 252 (374)
Q Consensus 185 g~~tv~~~l~~a~~~g~-~~~-V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~----------Dsav~~~m~~~~vd~Vl 252 (374)
|.|+.+..|..+.++|. +.+ +.|.=++|..++.+. ..+.|||+..++ |..+-..+++.++|.++
T Consensus 8 g~Gsn~~al~~~~~~~~l~~~i~~visn~~~~~~~~~----A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dliv 83 (207)
T PLN02331 8 GGGSNFRAIHDACLDGRVNGDVVVVVTNKPGCGGAEY----ARENGIPVLVYPKTKGEPDGLSPDELVDALRGAGVDFVL 83 (207)
T ss_pred CCChhHHHHHHHHHcCCCCeEEEEEEEeCCCChHHHH----HHHhCCCEEEeccccCCCcccchHHHHHHHHhcCCCEEE
Confidence 45777776666666564 333 455567787766543 456799997754 44555667778999988
Q ss_pred Ec-ceeee
Q 017293 253 VG-ADRVA 259 (374)
Q Consensus 253 vG-Ad~i~ 259 (374)
+. --.++
T Consensus 84 ~agy~~il 91 (207)
T PLN02331 84 LAGYLKLI 91 (207)
T ss_pred EeCcchhC
Confidence 84 34433
No 45
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=66.97 E-value=8.1 Score=38.72 Aligned_cols=51 Identities=20% Similarity=0.142 Sum_probs=38.1
Q ss_pred HHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccCcccc
Q 017293 240 AALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSID 294 (374)
Q Consensus 240 ~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~K~~ 294 (374)
-..+ +.+|+||.|==|+=. =++..|+ ...+|-+||.|+|||+++|.+.+-+
T Consensus 279 e~~v--~daDLVITGEGr~D~-Qs~~GK~-pigVA~~Akk~~vPvIaiaGs~~~~ 329 (378)
T COG1929 279 EDAV--KDADLVITGEGRIDS-QSLHGKT-PIGVAKLAKKYGVPVIAIAGSLGED 329 (378)
T ss_pred HHhh--ccCCEEEeCCCcccc-cccCCcc-chHHHHhhhhhCCCEEEEecccccC
Confidence 3456 899999999877733 2344443 4567889999999999999986654
No 46
>PRK10342 glycerate kinase I; Provisional
Probab=66.89 E-value=8.6 Score=38.98 Aligned_cols=51 Identities=18% Similarity=0.087 Sum_probs=38.7
Q ss_pred HHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccCcccc
Q 017293 240 AALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSID 294 (374)
Q Consensus 240 ~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~K~~ 294 (374)
-..| ..+|.||.|==++ |.....--....+|-.|+.|+|||+++|.+...+
T Consensus 279 ~~~l--~~ADLVITGEG~~--D~QTl~GK~p~gVa~~A~~~~vPviai~G~~~~~ 329 (381)
T PRK10342 279 EEHI--HDCTLVITGEGRI--DSQSIHGKVPIGVANVAKKYHKPVIGIAGSLTDD 329 (381)
T ss_pred HHHh--ccCCEEEECCCcC--cccccCCccHHHHHHHHHHhCCCEEEEecccCCC
Confidence 3556 8999999997665 3344444456778889999999999999986554
No 47
>KOG3075 consensus Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=66.12 E-value=76 Score=30.39 Aligned_cols=95 Identities=19% Similarity=0.079 Sum_probs=61.3
Q ss_pred ccHHHHHHH---HHHCCCeeEEE-EecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCCCCEEEEcceeeecCC
Q 017293 187 GTALGVIRA---LHSEGVLERAY-CSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANG 262 (374)
Q Consensus 187 ~tv~~~l~~---a~~~g~~~~V~-v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~vd~VlvGAd~i~~nG 262 (374)
+|+...... .+.+|..-+|+ |.+| .+ ++..+.+.|||+....+ ++.+|+.|=|||-|-+|.
T Consensus 52 stv~~~v~~i~q~l~~~~l~~vvgVPts------~~-s~q~~~~~gi~l~~~d~--------hp~iDlaidgADEvd~nl 116 (261)
T KOG3075|consen 52 STVVYAVDRIGQLLFDGDLGNVVGVPTS------FR-SAQLALEYGIPLSDLDS--------HPVIDLAIDGADEVDENL 116 (261)
T ss_pred cHHHHHHHHHHHHhcCCCcCceEecccc------hh-hHHHHHhcCCccccCCC--------CceeEEEecCchhhCcCc
Confidence 355544433 35556644444 4443 22 45668899999887654 489999999999999998
Q ss_pred CeecccccH-HHHHHHHhcCCeEEEeccCccccCC
Q 017293 263 DTANKIGTY-SLALCAKFHNILFYVAAPLTSIDLT 296 (374)
Q Consensus 263 ~v~nkiGT~-~lA~~Ak~~~vPvyV~a~~~K~~~~ 296 (374)
..+---|-. +=-..---..+.|+|++...|+.+.
T Consensus 117 n~ikggGg~l~qEk~v~~~akkfiviad~~k~~~~ 151 (261)
T KOG3075|consen 117 NLIKGGGGCLLQEKDVEGAAKKFIVIADSRKGSKG 151 (261)
T ss_pred ceEEeccchhhHHHHHHHhhhceEEEeeccccchh
Confidence 766333332 2112222345678999999998844
No 48
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=65.98 E-value=8.1 Score=34.48 Aligned_cols=124 Identities=15% Similarity=0.079 Sum_probs=73.0
Q ss_pred HHHHHhhCCCCeEEEcchHHHH-HHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEe--ccCccccCC
Q 017293 220 TAFELVHDRIPATLIADSAAAA-LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA--APLTSIDLT 296 (374)
Q Consensus 220 ~a~~L~~~GI~vtlI~Dsav~~-~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~--a~~~K~~~~ 296 (374)
+|..|.+.|++|.+.+-+++.. -+ .+.|.||+||..-+ |..=-.++...-.-...-.++|+=+. -.++.--.+
T Consensus 21 iA~~L~e~g~qvdi~dl~~~~~~~l--~~ydavVIgAsI~~--~h~~~~~~~Fv~k~~e~L~~kP~A~f~vnl~a~k~k~ 96 (175)
T COG4635 21 IASHLRESGIQVDIQDLHAVEEPAL--EDYDAVVIGASIRY--GHFHEAVQSFVKKHAEALSTKPSAFFSVNLTARKEKR 96 (175)
T ss_pred HHHHhhhcCCeeeeeehhhhhccCh--hhCceEEEecchhh--hhhHHHHHHHHHHHHHHHhcCCceEEEeehhhccccc
Confidence 4678999999999999999885 34 89999999996543 66666777777666677778886543 333321111
Q ss_pred CCCCCccccccCCcccceec-cCCCCccccCCCceeecceeeecCCCCccEEEeCCCCcc
Q 017293 297 LSSGQEIVIEERSAKELLCS-RGGLGEQVAASGISVWNPAFDVTPANLITGIITEKQGVV 355 (374)
Q Consensus 297 ~~~~~~i~ie~r~~~ev~~~-~~~~~~~~~~~~~~v~np~fD~tP~~lIt~iITE~~Gi~ 355 (374)
.+..... + -.++... |- ...+..=+-....|.|++-.--+|..|+.=. |--
T Consensus 97 ~~e~~~y-v----~kfl~~~~Wq--P~~~avfgGal~y~ry~w~D~~miklImk~~-Gge 148 (175)
T COG4635 97 TPETNSY-V----RKFLMKSPWQ--PVAIAVFGGALRYPRYRWFDRFMIKLIMKMS-GGE 148 (175)
T ss_pred CchHHHH-H----HHHHhcCCCc--hHHHHHhcccccCCccchHHHHHHHHhhccc-CCC
Confidence 1110000 0 0011100 10 0001111123457778888888888888877 743
No 49
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=65.98 E-value=24 Score=28.17 Aligned_cols=40 Identities=20% Similarity=0.164 Sum_probs=28.9
Q ss_pred HHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEe
Q 017293 239 AAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (374)
Q Consensus 239 v~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~ 287 (374)
+...+ +++|.||+=.|.|- ---+..+--.||.+++||+.+
T Consensus 42 l~~~i--~~aD~VIv~t~~vs-------H~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 42 LPSKI--KKADLVIVFTDYVS-------HNAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred HHHhc--CCCCEEEEEeCCcC-------hHHHHHHHHHHHHcCCcEEEE
Confidence 44445 78899987776663 333556667899999999986
No 50
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=64.22 E-value=29 Score=37.42 Aligned_cols=91 Identities=19% Similarity=0.054 Sum_probs=60.9
Q ss_pred CeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEE----cch-HHHHHHhcCCCCEEEEcceeeec-CCC----------e
Q 017293 201 VLERAYCSETRPFNQGSRLTAFELVHDRIPATLI----ADS-AAAALMKDGRVSAVIVGADRVAA-NGD----------T 264 (374)
Q Consensus 201 ~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI----~Ds-av~~~m~~~~vd~VlvGAd~i~~-nG~----------v 264 (374)
...+|.|+-.. .+=|..| ++.|.+.|+++++. +|. ++...+...++|.||=-|--... +-+ -
T Consensus 379 ~~mkiLVtGa~-G~iG~~l-~~~L~~~g~~v~~~~~~l~d~~~v~~~i~~~~pd~Vih~Aa~~~~~~~~~~~~~~~~~~~ 456 (668)
T PLN02260 379 PSLKFLIYGRT-GWIGGLL-GKLCEKQGIAYEYGKGRLEDRSSLLADIRNVKPTHVFNAAGVTGRPNVDWCESHKVETIR 456 (668)
T ss_pred CCceEEEECCC-chHHHHH-HHHHHhCCCeEEeeccccccHHHHHHHHHhhCCCEEEECCcccCCCCCChHHhCHHHHHH
Confidence 45677777654 3448777 56788889888532 332 45556655688988876632210 111 2
Q ss_pred ecccccHHHHHHHHhcCCeEEEeccCccc
Q 017293 265 ANKIGTYSLALCAKFHNILFYVAAPLTSI 293 (374)
Q Consensus 265 ~nkiGT~~lA~~Ak~~~vPvyV~a~~~K~ 293 (374)
+|..||..++-+|+.++++++++.-.+-|
T Consensus 457 ~N~~gt~~l~~a~~~~g~~~v~~Ss~~v~ 485 (668)
T PLN02260 457 ANVVGTLTLADVCRENGLLMMNFATGCIF 485 (668)
T ss_pred HHhHHHHHHHHHHHHcCCeEEEEccccee
Confidence 78999999999999999998877544434
No 51
>PRK02947 hypothetical protein; Provisional
Probab=63.70 E-value=1.3e+02 Score=28.29 Aligned_cols=33 Identities=15% Similarity=0.070 Sum_probs=24.6
Q ss_pred HHHHHhhCCCCeEEEcchHH-----------HHHHhcCCCCEEEEc
Q 017293 220 TAFELVHDRIPATLIADSAA-----------AALMKDGRVSAVIVG 254 (374)
Q Consensus 220 ~a~~L~~~GI~vtlI~Dsav-----------~~~m~~~~vd~VlvG 254 (374)
.++.+.+.|+++..|++..- ..+. ..+|.||.-
T Consensus 125 ~~~~a~~~g~~vI~iT~~~~s~~~~~~h~~gs~l~--~~ad~~l~~ 168 (246)
T PRK02947 125 MALEAKERGAKVIAVTSLAYSASVASRHSSGKRLA--EVADVVLDN 168 (246)
T ss_pred HHHHHHHCCCEEEEEcCCcccccccccCCCcCchh--HhCCEEEEc
Confidence 36678899999999999753 4555 678888743
No 52
>TIGR02428 pcaJ_scoB_fam 3-oxoacid CoA-transferase, B subunit. Various members of this family are characterized as the B subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by Pfam model pfam01144. The A subunit represents a different clade in pfam01144.
Probab=62.66 E-value=86 Score=28.92 Aligned_cols=97 Identities=27% Similarity=0.346 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCC------cchHhHHHH
Q 017293 150 NKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFN------QGSRLTAFE 223 (374)
Q Consensus 150 ~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~------eG~~l~a~~ 223 (374)
++.|+.++++.|. ||++|-. |.+.-..+...|.+ ++.+.+ ..|+-... .|.. .. .
T Consensus 3 ~~~Ia~~aA~~i~-----dg~~v~l----------GiGiP~~va~~l~~-~~~l~l-~~E~G~~g~~p~p~~~~~-~~-~ 63 (207)
T TIGR02428 3 RDQIAARAAQELK-----DGDYVNL----------GIGIPTLVANYLPE-GIEVFL-QSENGILGMGPAPEPGEE-DP-D 63 (207)
T ss_pred HHHHHHHHHHhcC-----CCCEEEE----------eecHHHHHHHHHhc-CCeEEE-EEeCceecCccCCCCCCc-CH-H
Confidence 5788999999999 8877653 22322333344433 454433 34532211 0111 11 3
Q ss_pred HhhCCC-CeEEE------cchHHHHHHhcCCCCEEEEcceeeecCCCee
Q 017293 224 LVHDRI-PATLI------ADSAAAALMKDGRVSAVIVGADRVAANGDTA 265 (374)
Q Consensus 224 L~~~GI-~vtlI------~Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~ 265 (374)
|.+.|. ++++. ..+....+++.+.+|.-++||=-|=..|.+-
T Consensus 64 l~~~g~~~~~~~~g~~~~~~~~~f~~~~~G~~dv~~lga~qvD~~GnvN 112 (207)
T TIGR02428 64 LINAGKQPVTLLPGASYFDSADSFAMIRGGHVDVAVLGALQVSENGDLA 112 (207)
T ss_pred HHhCCCCceeeccCcEEecChhheeeEcCCceeEEEechHHhCCCCccc
Confidence 555543 33333 3333334556688999999998887777654
No 53
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=62.38 E-value=81 Score=25.36 Aligned_cols=61 Identities=16% Similarity=0.103 Sum_probs=38.3
Q ss_pred HhhCCCCeEEEc--c----hHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEe
Q 017293 224 LVHDRIPATLIA--D----SAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (374)
Q Consensus 224 L~~~GI~vtlI~--D----sav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~ 287 (374)
+.+.|+++..+. . ..+..+..+.++|.|++|...=...+. --.|+..-.+ .++-+.||.++
T Consensus 65 ~~~~g~~~~~~~~~~~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~--~~lGs~~~~v-~~~~~~pvlvv 131 (132)
T cd01988 65 AASLGVPVHTIIRIDHDIASGILRTAKERQADLIIMGWHGSTSLRD--RLFGGVIDQV-LESAPCDVAVV 131 (132)
T ss_pred hhhcCCceEEEEEecCCHHHHHHHHHHhcCCCEEEEecCCCCCccc--eecCchHHHH-HhcCCCCEEEe
Confidence 446788877554 2 244445556789999999985332211 2256644444 57788999875
No 54
>PRK00208 thiG thiazole synthase; Reviewed
Probab=62.00 E-value=52 Score=31.45 Aligned_cols=106 Identities=17% Similarity=0.132 Sum_probs=61.8
Q ss_pred cccccHHHHHHHHH---HCC--C--eeEEEEecC--CCCCcchHhHHHHHhhCCCCeE-EEcchHH-HHHHhcCCCCEEE
Q 017293 184 AGYGTALGVIRALH---SEG--V--LERAYCSET--RPFNQGSRLTAFELVHDRIPAT-LIADSAA-AALMKDGRVSAVI 252 (374)
Q Consensus 184 ~g~~tv~~~l~~a~---~~g--~--~~~V~v~Es--rP~~eG~~l~a~~L~~~GI~vt-lI~Dsav-~~~m~~~~vd~Vl 252 (374)
+|-.|+...++.|+ +.+ . ++.|+-.+- -|...+.--.+++|.++|..|- |++|+-. +.-+..-.++.|.
T Consensus 70 aG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~G~~~vm 149 (250)
T PRK00208 70 AGCRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEAGCAAVM 149 (250)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeC
Confidence 34467776665443 322 2 455654433 2222222224778999999999 8887655 4444444556665
Q ss_pred EcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccCcc
Q 017293 253 VGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTS 292 (374)
Q Consensus 253 vGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~K 292 (374)
.-+.-|-.+-++.| -..+..+.+..++||++=+.-.+
T Consensus 150 Plg~pIGsg~gi~~---~~~i~~i~e~~~vpVIveaGI~t 186 (250)
T PRK00208 150 PLGAPIGSGLGLLN---PYNLRIIIEQADVPVIVDAGIGT 186 (250)
T ss_pred CCCcCCCCCCCCCC---HHHHHHHHHhcCCeEEEeCCCCC
Confidence 54444444444445 45577777778999998776544
No 55
>PLN02778 3,5-epimerase/4-reductase
Probab=61.38 E-value=33 Score=33.06 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=21.5
Q ss_pred ecccccHHHHHHHHhcCCeEEEecc
Q 017293 265 ANKIGTYSLALCAKFHNILFYVAAP 289 (374)
Q Consensus 265 ~nkiGT~~lA~~Ak~~~vPvyV~a~ 289 (374)
.|-.||..++-+|+.+++++++..-
T Consensus 86 ~Nv~gt~~ll~aa~~~gv~~v~~sS 110 (298)
T PLN02778 86 ANVVGTLTLADVCRERGLVLTNYAT 110 (298)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEec
Confidence 6889999999999999998877643
No 56
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=60.84 E-value=1.3e+02 Score=30.64 Aligned_cols=143 Identities=11% Similarity=0.088 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHH-----HHHHH--HHHCCC--eeE
Q 017293 134 AYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTAL-----GVIRA--LHSEGV--LER 204 (374)
Q Consensus 134 ~l~~~~~~~~~e~~~a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~tv~-----~~l~~--a~~~g~--~~~ 204 (374)
.+....+.+.+.....+.+....+.+.+. + ..|=.+|+| +|.+. +++.. -|.++. + +
T Consensus 183 ~~~~~~~~Y~~~lm~p~~~~v~~~l~~~~-----~-l~i~~IaP~-------HG~i~~~~~~~i~~~Y~~W~~~~~~~-~ 248 (388)
T COG0426 183 ELLPDMRKYYANLMAPNARLVLWALKKIK-----L-LKIEMIAPS-------HGPIWRGNPKEIVEAYRDWAEGQPKG-K 248 (388)
T ss_pred HHHHHHHHHHHHhhcccHHHHHHHHhhhc-----c-cCccEEEcC-------CCceeeCCHHHHHHHHHHHHccCCcc-e
Confidence 67788888888888888887777777776 3 345555554 34332 22221 222333 3 3
Q ss_pred EEEecCCCCCcchHh---HHHHHhhCCCCeEEEcchH--HHHHHhc-CCCCEEEEcceeeecCCCeecccccHHHHHHHH
Q 017293 205 AYCSETRPFNQGSRL---TAFELVHDRIPATLIADSA--AAALMKD-GRVSAVIVGADRVAANGDTANKIGTYSLALCAK 278 (374)
Q Consensus 205 V~v~EsrP~~eG~~l---~a~~L~~~GI~vtlI~Dsa--v~~~m~~-~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak 278 (374)
|-+.-..=+..-.+| .+..|.+.|+.|.++-++. ...++.. .+++.+++|.-.+ |++..-++++..--+.+.
T Consensus 249 V~l~Y~smyg~T~~ma~aiaegl~~~gv~v~~~~~~~~~~~eI~~~i~~a~~~vvGsPT~--~~~~~p~i~~~l~~v~~~ 326 (388)
T COG0426 249 VDLIYDSMYGNTEKMAQAIAEGLMKEGVDVEVINLEDADPSEIVEEILDAKGLVVGSPTI--NGGAHPPIQTALGYVLAL 326 (388)
T ss_pred EEEEEecccCCHHHHHHHHHHHhhhcCCceEEEEcccCCHHHHHHHHhhcceEEEecCcc--cCCCCchHHHHHHHHHhc
Confidence 433322223333333 2556788999988877554 4444411 5789999999887 577999999999999888
Q ss_pred hcCCeEEEeccCcc
Q 017293 279 FHNILFYVAAPLTS 292 (374)
Q Consensus 279 ~~~vPvyV~a~~~K 292 (374)
.++....++.++|=
T Consensus 327 ~~~~k~~~vfgS~G 340 (388)
T COG0426 327 APKNKLAGVFGSYG 340 (388)
T ss_pred cCcCceEEEEeccC
Confidence 87655566666653
No 57
>PRK05973 replicative DNA helicase; Provisional
Probab=60.16 E-value=1.6e+02 Score=27.91 Aligned_cols=115 Identities=15% Similarity=0.083 Sum_probs=60.5
Q ss_pred CCcEEEEecCCCcccccccccH--HHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeE-------EE----
Q 017293 168 SKFSVLTHCNTGSLATAGYGTA--LGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPAT-------LI---- 234 (374)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~tv--~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vt-------lI---- 234 (374)
.|+.++..+.+|+ |= |. +.++..+.++|.+.-.|-.|-.|.. + ...+...|++.. +.
T Consensus 63 ~Gsl~LIaG~PG~----GK-T~lalqfa~~~a~~Ge~vlyfSlEes~~~----i-~~R~~s~g~d~~~~~~~~~~d~~d~ 132 (237)
T PRK05973 63 PGDLVLLGARPGH----GK-TLLGLELAVEAMKSGRTGVFFTLEYTEQD----V-RDRLRALGADRAQFADLFEFDTSDA 132 (237)
T ss_pred CCCEEEEEeCCCC----CH-HHHHHHHHHHHHhcCCeEEEEEEeCCHHH----H-HHHHHHcCCChHHhccceEeecCCC
Confidence 5788888888753 22 43 4566777677776556666765532 2 223444455321 11
Q ss_pred --cchHHHHHHhcCCCCEEEEcceeeecCCCeeccccc--HHHHHHHHhcCCeEEEeccCcc
Q 017293 235 --ADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGT--YSLALCAKFHNILFYVAAPLTS 292 (374)
Q Consensus 235 --~Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT--~~lA~~Ak~~~vPvyV~a~~~K 292 (374)
.|.-+..+.++.+.+.||+=.=..+..+.--...+. ..+-..||.+|+|++++++...
T Consensus 133 ~~~~~ii~~l~~~~~~~lVVIDsLq~l~~~~~~~el~~~~~~Lk~~Ak~~gitvIl~sQl~r 194 (237)
T PRK05973 133 ICADYIIARLASAPRGTLVVIDYLQLLDQRREKPDLSVQVRALKSFARERGLIIVFISQIDR 194 (237)
T ss_pred CCHHHHHHHHHHhhCCCEEEEEcHHHHhhcccchhHHHHHHHHHHHHHhCCCeEEEEecCcc
Confidence 121233333334567666533122211100011222 3356689999999999987654
No 58
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=59.86 E-value=46 Score=30.31 Aligned_cols=66 Identities=18% Similarity=0.269 Sum_probs=37.6
Q ss_pred cccHHH-HHHHHHHCCCeeEEE-EecCCCCCcchHhHHHHHhhCCCCeEEEc----------chHHHHHHhcCCCCEEEE
Q 017293 186 YGTALG-VIRALHSEGVLERAY-CSETRPFNQGSRLTAFELVHDRIPATLIA----------DSAAAALMKDGRVSAVIV 253 (374)
Q Consensus 186 ~~tv~~-~l~~a~~~g~~~~V~-v~EsrP~~eG~~l~a~~L~~~GI~vtlI~----------Dsav~~~m~~~~vd~Vlv 253 (374)
.|+... ++....+.+....|. |.=.+|..++. ....+.|||+..+. |..+...++..++|.+++
T Consensus 10 ~gs~~~~ll~~~~~~~l~~~I~~vi~~~~~~~~~----~~A~~~gip~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~iv~ 85 (190)
T TIGR00639 10 NGSNLQAIIDACKEGKIPASVVLVISNKPDAYGL----ERAAQAGIPTFVLSLKDFPSREAFDQAIIEELRAHEVDLVVL 85 (190)
T ss_pred CChhHHHHHHHHHcCCCCceEEEEEECCccchHH----HHHHHcCCCEEEECccccCchhhhhHHHHHHHHhcCCCEEEE
Confidence 355554 444444444444443 23445555442 23567899998765 345566676778998876
Q ss_pred cc
Q 017293 254 GA 255 (374)
Q Consensus 254 GA 255 (374)
-.
T Consensus 86 ~~ 87 (190)
T TIGR00639 86 AG 87 (190)
T ss_pred eC
Confidence 43
No 59
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=59.32 E-value=40 Score=34.25 Aligned_cols=87 Identities=20% Similarity=0.216 Sum_probs=49.5
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchH---HHHHHhcCCCCEEEEcceeeecCCCeeccc
Q 017293 192 VIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSA---AAALMKDGRVSAVIVGADRVAANGDTANKI 268 (374)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsa---v~~~m~~~~vd~VlvGAd~i~~nG~v~nki 268 (374)
.|......|.. +|.-++=+..-..|+..-|.+.||+|+.+-... ....| +++.-.|+ ++.|..=+.-+ .
T Consensus 93 ai~~la~aGD~---iVss~~LYGGT~~lf~~tl~~~Gi~v~fvd~~d~~~~~~aI-~~nTkavf--~EtigNP~~~v--~ 164 (426)
T COG2873 93 AILNLAGAGDN---IVSSSKLYGGTYNLFSHTLKRLGIEVRFVDPDDPENFEAAI-DENTKAVF--AETIGNPGLDV--L 164 (426)
T ss_pred HHHHhccCCCe---eEeeccccCchHHHHHHHHHhcCcEEEEeCCCCHHHHHHHh-CcccceEE--EEeccCCCccc--c
Confidence 34444445543 233333333224455666889999999987544 33334 13344443 35564333223 3
Q ss_pred ccHHHHHHHHhcCCeEEE
Q 017293 269 GTYSLALCAKFHNILFYV 286 (374)
Q Consensus 269 GT~~lA~~Ak~~~vPvyV 286 (374)
---.+|-+||++|+|++|
T Consensus 165 Die~ia~iAh~~gvpliV 182 (426)
T COG2873 165 DIEAIAEIAHRHGVPLIV 182 (426)
T ss_pred CHHHHHHHHHHcCCcEEE
Confidence 334688999999999998
No 60
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=58.34 E-value=88 Score=24.49 Aligned_cols=58 Identities=7% Similarity=0.088 Sum_probs=34.6
Q ss_pred hCCCCeEEE--cc---hHHHHHHhcCCCCEEEEcceeeecCCCee-cccccHHHHHHHHhcCCeEEEe
Q 017293 226 HDRIPATLI--AD---SAAAALMKDGRVSAVIVGADRVAANGDTA-NKIGTYSLALCAKFHNILFYVA 287 (374)
Q Consensus 226 ~~GI~vtlI--~D---sav~~~m~~~~vd~VlvGAd~i~~nG~v~-nkiGT~~lA~~Ak~~~vPvyV~ 287 (374)
..|++++.. .. ..+....+..++|.|++|+..- +... ...|+..--+ .+..++|++++
T Consensus 67 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~dlvvig~~~~---~~~~~~~~~~~~~~l-l~~~~~pvliv 130 (130)
T cd00293 67 EAGVKVETVVLEGDPAEAILEAAEELGADLIVMGSRGR---SGLRRLLLGSVAERV-LRHAPCPVLVV 130 (130)
T ss_pred cCCCceEEEEecCCCHHHHHHHHHHcCCCEEEEcCCCC---CccceeeeccHHHHH-HhCCCCCEEeC
Confidence 367776543 22 2445555678899999998653 2222 2334444333 46688888864
No 61
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=56.95 E-value=1.3e+02 Score=27.10 Aligned_cols=38 Identities=5% Similarity=0.023 Sum_probs=25.9
Q ss_pred CCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccC
Q 017293 246 GRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPL 290 (374)
Q Consensus 246 ~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~ 290 (374)
.+=|.+|+ |..+|. .--+..++-.||.+|+|++.++..
T Consensus 110 ~~~Dv~I~----iS~SG~---t~~~i~~~~~ak~~g~~iI~iT~~ 147 (192)
T PRK00414 110 REGDVLLG----ISTSGN---SGNIIKAIEAARAKGMKVITLTGK 147 (192)
T ss_pred CCCCEEEE----EeCCCC---CHHHHHHHHHHHHCCCeEEEEeCC
Confidence 45566654 445662 334556777899999999998764
No 62
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=55.00 E-value=2e+02 Score=27.58 Aligned_cols=63 Identities=14% Similarity=0.091 Sum_probs=43.3
Q ss_pred HHHHhhCCCCeEEEcchHHHHH-H-hcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccC
Q 017293 221 AFELVHDRIPATLIADSAAAAL-M-KDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPL 290 (374)
Q Consensus 221 a~~L~~~GI~vtlI~Dsav~~~-m-~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~ 290 (374)
++.|...|++|.++.|....+. + .-.+=|.||+ |.-.|. .-=+...+-.||.+|+|++.++.+
T Consensus 149 ~~~l~~ig~~~~~~~d~~~~~~~~~~~~~~Dv~i~----iS~sG~---t~e~i~~a~~ak~~ga~vIaiT~~ 213 (281)
T COG1737 149 AYKLMRIGLNVVALSDTHGQLMQLALLTPGDVVIA----ISFSGY---TREIVEAAELAKERGAKVIAITDS 213 (281)
T ss_pred HHHHHHcCCceeEecchHHHHHHHHhCCCCCEEEE----EeCCCC---cHHHHHHHHHHHHCCCcEEEEcCC
Confidence 5678899999999999988751 1 1133444442 333442 333567788999999999998765
No 63
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=53.64 E-value=86 Score=29.94 Aligned_cols=70 Identities=19% Similarity=0.229 Sum_probs=44.9
Q ss_pred HHHHHhhCCCCeE-EEcchHH-HHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccCcc
Q 017293 220 TAFELVHDRIPAT-LIADSAA-AALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTS 292 (374)
Q Consensus 220 ~a~~L~~~GI~vt-lI~Dsav-~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~K 292 (374)
.+++|.+.|..|- |+.|+-. +.-+..-.++.|...+.-|-.|-++.| -..+..+.+..++||++=+.-.+
T Consensus 115 aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~G~~~vmPlg~pIGsg~Gi~~---~~~I~~I~e~~~vpVI~egGI~t 186 (248)
T cd04728 115 AAEILVKEGFTVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGSGQGLLN---PYNLRIIIERADVPVIVDAGIGT 186 (248)
T ss_pred HHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCCCCCCCC---HHHHHHHHHhCCCcEEEeCCCCC
Confidence 4678999999998 8877654 444434455555544444444444444 45666777778899998765443
No 64
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=53.53 E-value=81 Score=28.94 Aligned_cols=94 Identities=23% Similarity=0.181 Sum_probs=56.3
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCC
Q 017293 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGR 247 (374)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~ 247 (374)
.|..||..+-+ ..+..-++.+.+.|-.++|+-.+.. ..+ .+|.+.| .++++.-.--...+ ..
T Consensus 8 ~gk~vlVvGgG--------~va~rk~~~Ll~~ga~VtVvsp~~~-----~~l--~~l~~~~-~i~~~~~~~~~~dl--~~ 69 (205)
T TIGR01470 8 EGRAVLVVGGG--------DVALRKARLLLKAGAQLRVIAEELE-----SEL--TLLAEQG-GITWLARCFDADIL--EG 69 (205)
T ss_pred CCCeEEEECcC--------HHHHHHHHHHHHCCCEEEEEcCCCC-----HHH--HHHHHcC-CEEEEeCCCCHHHh--CC
Confidence 35577777631 2345556677777877766643322 122 3566777 77777643323344 56
Q ss_pred CCEEEEcceeeecCCCe-ecccccHHHHHHHHhcCCeEEEecc
Q 017293 248 VSAVIVGADRVAANGDT-ANKIGTYSLALCAKFHNILFYVAAP 289 (374)
Q Consensus 248 vd~VlvGAd~i~~nG~v-~nkiGT~~lA~~Ak~~~vPvyV~a~ 289 (374)
.+.|++. -|+- .| ..++-.|+..++||.++-+
T Consensus 70 ~~lVi~a------t~d~~ln----~~i~~~a~~~~ilvn~~d~ 102 (205)
T TIGR01470 70 AFLVIAA------TDDEELN----RRVAHAARARGVPVNVVDD 102 (205)
T ss_pred cEEEEEC------CCCHHHH----HHHHHHHHHcCCEEEECCC
Confidence 6666433 3332 44 3788899999999998754
No 65
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=53.49 E-value=1.3e+02 Score=24.94 Aligned_cols=43 Identities=16% Similarity=0.158 Sum_probs=29.6
Q ss_pred HhcCCCCEEEEcceeeecCCCeecc-cccHHHHHHHHhcC--CeEEEec
Q 017293 243 MKDGRVSAVIVGADRVAANGDTANK-IGTYSLALCAKFHN--ILFYVAA 288 (374)
Q Consensus 243 m~~~~vd~VlvGAd~i~~nG~v~nk-iGT~~lA~~Ak~~~--vPvyV~a 288 (374)
..+.++|.+++|++.- |++--. .|+.--..+.++.. +||+|+.
T Consensus 99 a~~~~~dlIV~Gs~g~---~~l~~~~~gssva~~Vi~~a~~~c~Vlvv~ 144 (146)
T cd01989 99 VADHGITKLVMGASSD---NHFSMKFKKSDVASSVLKEAPDFCTVYVVS 144 (146)
T ss_pred HHHcCCCEEEEeccCC---CceeecccCCchhHHHHhcCCCCceEEEEe
Confidence 3567899999999865 333322 35444455678888 9999974
No 66
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=53.46 E-value=1.5e+02 Score=30.56 Aligned_cols=52 Identities=13% Similarity=-0.006 Sum_probs=39.6
Q ss_pred CCCCEEEEcce-eeecCCCeecccccHHHHHHHHhcCCeEEEeccCccccCCCC
Q 017293 246 GRVSAVIVGAD-RVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLS 298 (374)
Q Consensus 246 ~~vd~VlvGAd-~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~K~~~~~~ 298 (374)
-.+|..|.||+ +|..+|++++..|.-+.-+++ ..-.-++++.+..|+.+...
T Consensus 180 ~~advgit~an~aiAetGtlv~~~~~gn~R~~~-~lP~~hI~vvg~~kivp~~~ 232 (432)
T TIGR00273 180 LSADIGISGCNFAIAETGSIFLVENEGNGRLST-TLPKTHIAVMGIEKIVPTFD 232 (432)
T ss_pred hcCCEEEeccchHhhcCceEEEecCCCCchhhc-cCCCeEEEEEEHHHccCCHH
Confidence 47999999999 999999999988888744443 33444557788888876643
No 67
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=53.10 E-value=1.6e+02 Score=25.93 Aligned_cols=110 Identities=16% Similarity=0.118 Sum_probs=60.4
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcc-hHhHHHHHhhCCCCeEEE-cchHHHHHHhc
Q 017293 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQG-SRLTAFELVHDRIPATLI-ADSAAAALMKD 245 (374)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG-~~l~a~~L~~~GI~vtlI-~Dsav~~~m~~ 245 (374)
.+..|+..|-+|-=. +-.+..-|++++.|.+..|++....+.... .+.-.+.+.+.|+++... .+......+
T Consensus 24 ~~~~v~il~G~GnNG----gDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-- 97 (169)
T PF03853_consen 24 KGPRVLILCGPGNNG----GDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKIIELDSDEDLSEAL-- 97 (169)
T ss_dssp TT-EEEEEE-SSHHH----HHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEESSCCGSGGGHHG--
T ss_pred CCCeEEEEECCCCCh----HHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEeeccccchhhccc--
Confidence 457788777544211 123445588888899988877755443332 222233467888877654 343444455
Q ss_pred CCCCEEEEcceeeecCCCeecccccH-HHHHHHHhcCCeEEE
Q 017293 246 GRVSAVIVGADRVAANGDTANKIGTY-SLALCAKFHNILFYV 286 (374)
Q Consensus 246 ~~vd~VlvGAd~i~~nG~v~nkiGT~-~lA~~Ak~~~vPvyV 286 (374)
...|.|| |+++-.|--=.--|.+ .+.-.++.++.|++.
T Consensus 98 ~~~dlII---Dal~G~G~~~~l~~~~~~~i~~iN~~~~~viA 136 (169)
T PF03853_consen 98 EPADLII---DALFGTGFSGPLRGPIAELIDWINASRAPVIA 136 (169)
T ss_dssp SCESEEE---EES-STTGGSCGSTCHHHHHHHHHHHCSEEEE
T ss_pred ccccEEE---EecccCCCCCCcCHHHHHHHHHHhccCCcEEE
Confidence 5788876 7777766332333333 333356677787654
No 68
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=52.77 E-value=71 Score=32.91 Aligned_cols=71 Identities=14% Similarity=0.030 Sum_probs=41.3
Q ss_pred CcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCCC
Q 017293 169 KFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRV 248 (374)
Q Consensus 169 ~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~v 248 (374)
+..|+..+-. .+-+.+.+.+.+.|. +|.+.|.++...... ..+.|.+.||++..=.+.. .. ..+
T Consensus 16 ~~~v~viG~G--------~~G~~~A~~L~~~G~--~V~~~d~~~~~~~~~-~~~~l~~~gv~~~~~~~~~---~~--~~~ 79 (480)
T PRK01438 16 GLRVVVAGLG--------VSGFAAADALLELGA--RVTVVDDGDDERHRA-LAAILEALGATVRLGPGPT---LP--EDT 79 (480)
T ss_pred CCEEEEECCC--------HHHHHHHHHHHHCCC--EEEEEeCCchhhhHH-HHHHHHHcCCEEEECCCcc---cc--CCC
Confidence 4567777642 122334455555564 688888776533322 2456888998875432222 22 568
Q ss_pred CEEEEcc
Q 017293 249 SAVIVGA 255 (374)
Q Consensus 249 d~VlvGA 255 (374)
|.||++.
T Consensus 80 D~Vv~s~ 86 (480)
T PRK01438 80 DLVVTSP 86 (480)
T ss_pred CEEEECC
Confidence 8888765
No 69
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=51.98 E-value=1.8e+02 Score=29.24 Aligned_cols=88 Identities=15% Similarity=0.102 Sum_probs=46.8
Q ss_pred HHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEc-c-hHHHHHHhcCCCCEEEEcceeee-cCCCeec
Q 017293 190 LGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIA-D-SAAAALMKDGRVSAVIVGADRVA-ANGDTAN 266 (374)
Q Consensus 190 ~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~-D-sav~~~m~~~~vd~VlvGAd~i~-~nG~v~n 266 (374)
..++....+.|. +|++. .|.+.+..-....+...|+++..+. | ..+...+...+...|++ +... ++|.++.
T Consensus 82 ~~~l~~ll~~GD--~Vlv~--~~~y~~~~~~~~~~~~~g~~v~~~~~d~~~l~~~i~~~~tklV~i--e~p~NPtG~v~d 155 (385)
T PRK08574 82 STLFFSLLKAGD--RVVLP--MEAYGTTLRLLKSLEKFGVKVVLAYPSTEDIIEAIKEGRTKLVFI--ETMTNPTLKVID 155 (385)
T ss_pred HHHHHHHhCCCC--EEEEc--CCCchhHHHHHHHhhccCcEEEEECCCHHHHHHhcCccCceEEEE--ECCCCCCCEecC
Confidence 334444454453 55554 4555443222333566788887652 2 33444442225555554 3333 2454443
Q ss_pred ccccHHHHHHHHhcCCeEEE
Q 017293 267 KIGTYSLALCAKFHNILFYV 286 (374)
Q Consensus 267 kiGT~~lA~~Ak~~~vPvyV 286 (374)
+ -.++-+||.+|++++|
T Consensus 156 -l--~~I~~la~~~gi~liv 172 (385)
T PRK08574 156 -V--PEVAKAAKELGAILVV 172 (385)
T ss_pred -H--HHHHHHHHHcCCEEEE
Confidence 2 3677789999999986
No 70
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=51.50 E-value=40 Score=32.02 Aligned_cols=115 Identities=19% Similarity=0.187 Sum_probs=64.4
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHH---HHCC--C--eeEEEEecCC--CCCcchHhHHHHHhhCCCCeE-EE-cc
Q 017293 168 SKFSVLTHCNTGSLATAGYGTALGVIRAL---HSEG--V--LERAYCSETR--PFNQGSRLTAFELVHDRIPAT-LI-AD 236 (374)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~tv~~~l~~a---~~~g--~--~~~V~v~Esr--P~~eG~~l~a~~L~~~GI~vt-lI-~D 236 (374)
.+.++|-- |+|-.|+...++.| .+.+ . ++.|+-.+-. |...+.--.+++|.+.|..|- |+ +|
T Consensus 61 ~~~~lLPN-------TaGc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D 133 (247)
T PF05690_consen 61 SGYTLLPN-------TAGCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDD 133 (247)
T ss_dssp CTSEEEEE--------TT-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEEEE-S-
T ss_pred cCCEECCc-------CCCCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEeecCCCC
Confidence 45666643 23456787766544 3432 2 3444433322 444343235788999998753 33 46
Q ss_pred hHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccCcc
Q 017293 237 SAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTS 292 (374)
Q Consensus 237 sav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~K 292 (374)
-.++.-+..-.|..|.-.+.=|-++=++.|+ +.+-++..+.++||+|=+.--+
T Consensus 134 ~v~akrL~d~GcaavMPlgsPIGSg~Gi~n~---~~l~~i~~~~~vPvIvDAGiG~ 186 (247)
T PF05690_consen 134 PVLAKRLEDAGCAAVMPLGSPIGSGRGIQNP---YNLRIIIERADVPVIVDAGIGT 186 (247)
T ss_dssp HHHHHHHHHTT-SEBEEBSSSTTT---SSTH---HHHHHHHHHGSSSBEEES---S
T ss_pred HHHHHHHHHCCCCEEEecccccccCcCCCCH---HHHHHHHHhcCCcEEEeCCCCC
Confidence 6667777666667777666666666666665 7889999999999999776544
No 71
>PF02595 Gly_kinase: Glycerate kinase family; InterPro: IPR004381 This family includes glycerate kinase 2 (2.7.1.31 from EC), which catalyses the phosphorylation of (R)-glycerate to 3-phospho-(R)-glycerate in the presence of ATP. These proteins consist of two different alpha/beta domains: domain 1 has a flavodoxin-like fold, while domain 2 has a restriction enzyme-like fold (domain 2 is inserted into domain 1).; GO: 0008887 glycerate kinase activity, 0031388 organic acid phosphorylation; PDB: 3CWC_B 1TO6_A.
Probab=51.47 E-value=7.6 Score=39.34 Aligned_cols=52 Identities=21% Similarity=0.189 Sum_probs=32.2
Q ss_pred HHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccCcccc
Q 017293 239 AAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSID 294 (374)
Q Consensus 239 v~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~K~~ 294 (374)
.-..+ .++|.||.|==++ |.....--....+|-+|+.|+|||+++|.+...+
T Consensus 278 l~~~l--~~aDlVITGEG~~--D~Qtl~GK~p~~Va~~A~~~~vPviav~G~~~~~ 329 (377)
T PF02595_consen 278 LEERL--EDADLVITGEGRL--DAQTLAGKVPGGVARLAKKHGVPVIAVAGSVDLD 329 (377)
T ss_dssp HHHHC--CC-SEEEE--CEC--STTTTTTCHHHHHHCCHCCTT--EEEEECEC-TT
T ss_pred HHHHh--cCCCEEEECcccc--ccccCCCcHHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence 44566 8999999998664 2223333345667788999999999999986654
No 72
>PLN02735 carbamoyl-phosphate synthase
Probab=49.81 E-value=1.2e+02 Score=35.14 Aligned_cols=81 Identities=16% Similarity=0.223 Sum_probs=54.9
Q ss_pred HHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEc---c--hHHHHHHhcCCCCEEEEcceeeecCCCee
Q 017293 191 GVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIA---D--SAAAALMKDGRVSAVIVGADRVAANGDTA 265 (374)
Q Consensus 191 ~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~---D--sav~~~m~~~~vd~VlvGAd~i~~nG~v~ 265 (374)
.+.+.+.+ ..|++|.++. |++.|.+.||+|+.+. + ..+--+++++++|+||-- ++|.-.
T Consensus 989 ~~a~~L~~--lG~~i~aT~G---------Ta~~L~~~Gi~~~~v~~~~~~~~~~~~~i~~~~i~~vin~-----~~~~~~ 1052 (1102)
T PLN02735 989 PIARGFLE--LGFRIVSTSG---------TAHFLELAGIPVERVLKLHEGRPHAGDMLANGQIQLMVIT-----SSGDAL 1052 (1102)
T ss_pred HHHHHHHH--CCCEEEEccH---------HHHHHHHCCCceEEEeeccCCCccHHHHHHcCCeEEEEEC-----CCCccc
Confidence 34444443 3577776653 5778999999988763 2 235566778999999853 344332
Q ss_pred cccccHHHHHHHHhcCCeEEEe
Q 017293 266 NKIGTYSLALCAKFHNILFYVA 287 (374)
Q Consensus 266 nkiGT~~lA~~Ak~~~vPvyV~ 287 (374)
-..-.|.+=..|-.+|||++--
T Consensus 1053 ~~~d~~~iRr~a~~~~ip~~t~ 1074 (1102)
T PLN02735 1053 DQKDGRQLRRMALAYKVPIITT 1074 (1102)
T ss_pred cccccHHHHHHHHHcCCCEEec
Confidence 1335688999999999999843
No 73
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=48.60 E-value=31 Score=28.31 Aligned_cols=88 Identities=20% Similarity=0.279 Sum_probs=48.9
Q ss_pred EEEEecCCCcccccccccHHHHHHHH-HHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCCCC
Q 017293 171 SVLTHCNTGSLATAGYGTALGVIRAL-HSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVS 249 (374)
Q Consensus 171 ~ILT~~~sg~lat~g~~tv~~~l~~a-~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~vd 249 (374)
.||..++.| =++.|-.+ .+..+..+||+.-..|.-+. +.+ .+++..-.-..+..+.++.++|
T Consensus 2 kVLviGsGg---------REHAia~~l~~s~~v~~v~~aPGN~G~~~-------~~~-~~~~~~~d~~~l~~~a~~~~id 64 (100)
T PF02844_consen 2 KVLVIGSGG---------REHAIAWKLSQSPSVEEVYVAPGNPGTAE-------LGK-NVPIDITDPEELADFAKENKID 64 (100)
T ss_dssp EEEEEESSH---------HHHHHHHHHTTCTTEEEEEEEE--TTGGG-------TSE-EE-S-TT-HHHHHHHHHHTTES
T ss_pred EEEEECCCH---------HHHHHHHHHhcCCCCCEEEEeCCCHHHHh-------hce-ecCCCCCCHHHHHHHHHHcCCC
Confidence 577776532 24455444 34445678999877554321 111 1222111122455566789999
Q ss_pred EEEEcceeeecCCCeecccccHHHHHHHHhcCCeEE
Q 017293 250 AVIVGADRVAANGDTANKIGTYSLALCAKFHNILFY 285 (374)
Q Consensus 250 ~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvy 285 (374)
+||+|-+.-+.+| ++=.-+..|+|++
T Consensus 65 lvvvGPE~pL~~G----------l~D~l~~~gi~vf 90 (100)
T PF02844_consen 65 LVVVGPEAPLVAG----------LADALRAAGIPVF 90 (100)
T ss_dssp EEEESSHHHHHTT----------HHHHHHHTT-CEE
T ss_pred EEEECChHHHHHH----------HHHHHHHCCCcEE
Confidence 9999999999988 3334455677765
No 74
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=48.56 E-value=80 Score=30.67 Aligned_cols=87 Identities=13% Similarity=0.085 Sum_probs=48.1
Q ss_pred HHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchH-HHHHHhcCCCCEEEEcceeeecCCCeecc
Q 017293 189 ALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSA-AAALMKDGRVSAVIVGADRVAANGDTANK 267 (374)
Q Consensus 189 v~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsa-v~~~m~~~~vd~VlvGAd~i~~nG~v~nk 267 (374)
++..+..+...| +|++. .|.+.+.. ..+...|+++..++|.. +-..+ .+.+.|++ ..-=-+-|.+...
T Consensus 76 ~i~~~~~~l~~g---~vl~~--~p~y~~~~---~~~~~~g~~~~~~~d~~~l~~~~--~~~~~v~i-~~p~NPtG~~~~~ 144 (330)
T TIGR01140 76 AIYLLPRLLAPG---RVLVL--APTYSEYA---RAWRAAGHEVVELPDLDRLPAAL--EELDVLVL-CNPNNPTGRLIPP 144 (330)
T ss_pred HHHHHHHHhCCC---eEEEe--CCCcHHHH---HHHHHcCCEEEEeCCHHHHHhhc--ccCCEEEE-eCCCCCCCCCCCH
Confidence 444444444433 45553 58776653 23668899999988532 33334 44555544 1111233444443
Q ss_pred cccHHHHHHHHhcCCeEEE
Q 017293 268 IGTYSLALCAKFHNILFYV 286 (374)
Q Consensus 268 iGT~~lA~~Ak~~~vPvyV 286 (374)
-.=..++-.|+.+++++++
T Consensus 145 ~~~~~l~~~a~~~~~~ii~ 163 (330)
T TIGR01140 145 ETLLALAARLRARGGWLVV 163 (330)
T ss_pred HHHHHHHHHhHhcCCEEEE
Confidence 3344466778889998775
No 75
>PRK09191 two-component response regulator; Provisional
Probab=48.42 E-value=1.2e+02 Score=27.79 Aligned_cols=95 Identities=18% Similarity=0.124 Sum_probs=53.7
Q ss_pred ccHHHHHHHHHH---CCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEE-EcchH-HHHHHhcCCCCEEEEcceeeecC
Q 017293 187 GTALGVIRALHS---EGVLERAYCSETRPFNQGSRLTAFELVHDRIPATL-IADSA-AAALMKDGRVSAVIVGADRVAAN 261 (374)
Q Consensus 187 ~tv~~~l~~a~~---~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtl-I~Dsa-v~~~m~~~~vd~VlvGAd~i~~n 261 (374)
+||..-+..|.+ .....+|++++..|..... + ...|...|+.+.. ..+.. +-..+.+...|.|++..+ .++
T Consensus 119 ~tV~~~l~ra~~~l~~~~~~~~liidd~~~~~~~-l-~~~L~~~~~~~~~~~~~~~~~l~~l~~~~~dlvi~d~~--~~~ 194 (261)
T PRK09191 119 AEAEALLDDARAEIARQVATRVLIIEDEPIIAMD-L-EQLVESLGHRVTGIARTRAEAVALAKKTRPGLILADIQ--LAD 194 (261)
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEcCcHHHHHH-H-HHHHhcCCCEEEEEECCHHHHHHHHhccCCCEEEEecC--CCC
Confidence 566665555543 2345577888776655321 2 4567888988774 44433 223344567899988764 222
Q ss_pred CCeecccccHHHHHHHHhcCCeEEEecc
Q 017293 262 GDTANKIGTYSLALCAKFHNILFYVAAP 289 (374)
Q Consensus 262 G~v~nkiGT~~lA~~Ak~~~vPvyV~a~ 289 (374)
| .-|.-.+.-+.+..++|++++++
T Consensus 195 ~----~~g~e~l~~l~~~~~~pii~ls~ 218 (261)
T PRK09191 195 G----SSGIDAVNDILKTFDVPVIFITA 218 (261)
T ss_pred C----CCHHHHHHHHHHhCCCCEEEEeC
Confidence 2 11223333344444899999865
No 76
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=47.99 E-value=58 Score=32.30 Aligned_cols=32 Identities=13% Similarity=0.116 Sum_probs=22.4
Q ss_pred cceeeecCCCeecccccHHHHHHHHhcCCeEEEeccCc
Q 017293 254 GADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLT 291 (374)
Q Consensus 254 GAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~ 291 (374)
+.|.|..|. .++..+++|+.+|||++..++.+
T Consensus 92 ~pDlVi~d~------~~~~~~~~A~~~giP~v~~~~~~ 123 (392)
T TIGR01426 92 RPDLIVYDI------ASWTGRLLARKWDVPVISSFPTF 123 (392)
T ss_pred CCCEEEECC------ccHHHHHHHHHhCCCEEEEehhh
Confidence 455555554 34556788999999999887654
No 77
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=47.95 E-value=1.9e+02 Score=29.71 Aligned_cols=90 Identities=18% Similarity=0.152 Sum_probs=46.1
Q ss_pred HHHHHHHHHCCCeeEEEEecCCCCCcchH-hHHHHHhhCCCCeEEEcch-HHHHHHh--cCCCCEEEEcceeee-cCCCe
Q 017293 190 LGVIRALHSEGVLERAYCSETRPFNQGSR-LTAFELVHDRIPATLIADS-AAAALMK--DGRVSAVIVGADRVA-ANGDT 264 (374)
Q Consensus 190 ~~~l~~a~~~g~~~~V~v~EsrP~~eG~~-l~a~~L~~~GI~vtlI~Ds-av~~~m~--~~~vd~VlvGAd~i~-~nG~v 264 (374)
...|....+.|. +|++..+ .+.|.. +..+.|.+.|+.++++.|. ....+.+ +++. ++|+ .+.+. +.|.+
T Consensus 98 ~~al~all~~Gd--~Vv~~~~--~y~~t~~~~~~~l~~~Gi~v~~vdd~~d~e~l~~ai~~~t-klV~-ie~~sNp~G~v 171 (436)
T PRK07812 98 TFAILNLAGAGD--HIVSSPR--LYGGTYNLFHYTLPKLGIEVSFVEDPDDLDAWRAAVRPNT-KAFF-AETISNPQIDV 171 (436)
T ss_pred HHHHHHHhCCCC--EEEEeCC--cchHHHHHHHHHhhcCeEEEEEECCCCCHHHHHHhCCCCC-eEEE-EECCCCCCCee
Confidence 345555555454 6666653 333432 2233467789999988531 1222221 1233 3332 22232 12322
Q ss_pred ecccccHHHHHHHHhcCCeEEEec
Q 017293 265 ANKIGTYSLALCAKFHNILFYVAA 288 (374)
Q Consensus 265 ~nkiGT~~lA~~Ak~~~vPvyV~a 288 (374)
. .+ -.++-+||.+|++++|=+
T Consensus 172 ~-Dl--~~I~~la~~~gi~liVD~ 192 (436)
T PRK07812 172 L-DI--PGVAEVAHEAGVPLIVDN 192 (436)
T ss_pred c-CH--HHHHHHHHHcCCEEEEEC
Confidence 2 22 358889999999988743
No 78
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=47.66 E-value=20 Score=30.13 Aligned_cols=106 Identities=22% Similarity=0.158 Sum_probs=0.0
Q ss_pred EEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEE-----cchHHHHHHhcCC
Q 017293 173 LTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLI-----ADSAAAALMKDGR 247 (374)
Q Consensus 173 LT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI-----~Dsav~~~m~~~~ 247 (374)
+..+-||+.++ +. +..+++.+.+.|..++|+++++ +.++...+. ..+-++..- .+......-..+.
T Consensus 3 i~l~vtGs~~~--~~-~~~~l~~L~~~g~~v~vv~S~~-----A~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~ 73 (129)
T PF02441_consen 3 ILLGVTGSIAA--YK-APDLLRRLKRAGWEVRVVLSPS-----AERFVTPEG-LTGEPVYTDWDTWDRGDPAEHIELSRW 73 (129)
T ss_dssp EEEEE-SSGGG--GG-HHHHHHHHHTTTSEEEEEESHH-----HHHHSHHHG-HCCSCEECTHCTCSTTTTTCHHHHHHT
T ss_pred EEEEEECHHHH--HH-HHHHHHHHhhCCCEEEEEECCc-----HHHHhhhhc-cccchhhhccccCCCCCCcCccccccc
Q ss_pred CCEEEEcceeeecCCCeecccccHHHHHHHHhc---CCeEEEe
Q 017293 248 VSAVIVGADRVAANGDTANKIGTYSLALCAKFH---NILFYVA 287 (374)
Q Consensus 248 vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~---~vPvyV~ 287 (374)
.|.++|-.-+.-.=+.++|=+.--.+..++... ++|++++
T Consensus 74 ~D~~vVaPaT~NtlaKiA~GiaD~l~~~~~~~~l~~~~pvvi~ 116 (129)
T PF02441_consen 74 ADAMVVAPATANTLAKIANGIADNLLTRVALAALKEGKPVVIA 116 (129)
T ss_dssp ESEEEEEEEEHHHHHHHHTT--SSHHHHHHHHHHHTTCGEEEE
T ss_pred CCEEEEcccCHHHHHHHHhCCcchHHHHHHHHHccCCCCeEEE
No 79
>PF06026 Rib_5-P_isom_A: Ribose 5-phosphate isomerase A (phosphoriboisomerase A); InterPro: IPR004788 Ribose 5-phosphate isomerase, also known as phosphoriboisomerase, catalyses the reversible conversion of D-ribose 5-phosphate to D-ribulose 5-phosphate, the first step in the non-oxidative branch of the pentose phosphate pathway []. This reaction enables ribose to be synthesized from sugars, as well as the recycling of sugars during the degradation of nucleotides. There are two unrelated types of ribose 5-phosphate isomerases: type A (RpiA) is the most common and is found in most organisms, while type B (RpiB) is restricted to specific eukaryotic and prokaryotic species. Escherichia coli produces both RpiA and RpiB (also known as AlsB), although RpiA accounts for 99% of total RPI enzymes []. This entry represents type A (RpiA) enzymes found in eukaryotes (plants, Metazoa and fungi), bacteria and archaea.; GO: 0004751 ribose-5-phosphate isomerase activity, 0009052 pentose-phosphate shunt, non-oxidative branch; PDB: 1M0S_B 3HHE_B 1LKZ_B 1KS2_A 1O8B_A 3UW1_A 3U7J_A 3L7O_A 1XTZ_A 1UJ6_A ....
Probab=46.33 E-value=38 Score=30.51 Aligned_cols=78 Identities=19% Similarity=0.145 Sum_probs=49.9
Q ss_pred HHHHHhhCCCCeEEEcchHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHH--HHHHhcCCeEEEeccCccccCCC
Q 017293 220 TAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLA--LCAKFHNILFYVAAPLTSIDLTL 297 (374)
Q Consensus 220 ~a~~L~~~GI~vtlI~Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA--~~Ak~~~vPvyV~a~~~K~~~~~ 297 (374)
|+..+.+.|||++-+.+ . .++|..|=|||-|-.|...+ |-|.-.+- =+......-++++++..|+..+.
T Consensus 10 T~~~a~~~Gi~l~~~~~------~--~~iDl~iDGaDevd~~l~lI-KGgGgallrEKiva~~a~~~I~i~DesK~v~~L 80 (173)
T PF06026_consen 10 TELLARKLGIPLVDLDE------V--DRIDLAIDGADEVDPDLNLI-KGGGGALLREKIVASAAKRFIIIVDESKLVEKL 80 (173)
T ss_dssp HHHHHHHTT-EBE-GGG------S--SSEEEEEEE-SEEETTSEEE---TTS-HHHHHHHHHTEEEEEEEEEGGGBESSB
T ss_pred HHHHHHHcCCcEEcccc------C--CcceEEEECchhhcCCCCEE-ECCCccchhhhhHHHhhceEEEEECCCcEeeEc
Confidence 45567789999877655 2 68999999999999998777 44433222 13444567788889999998754
Q ss_pred CCCCcccccc
Q 017293 298 SSGQEIVIEE 307 (374)
Q Consensus 298 ~~~~~i~ie~ 307 (374)
- ...+|+|-
T Consensus 81 g-~~plPvEV 89 (173)
T PF06026_consen 81 G-KFPLPVEV 89 (173)
T ss_dssp T-SS-EEEEE
T ss_pred C-CCceeEEE
Confidence 3 33455553
No 80
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=46.02 E-value=1.5e+02 Score=34.09 Aligned_cols=79 Identities=22% Similarity=0.218 Sum_probs=53.5
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcc-----hHHHHHHhcCCCCEEEEcceeeecCCCeec
Q 017293 192 VIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIAD-----SAAAALMKDGRVSAVIVGADRVAANGDTAN 266 (374)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~D-----sav~~~m~~~~vd~VlvGAd~i~~nG~v~n 266 (374)
+.+..++ ..|++|.++. ||+.|.+.||+|+.+.- ..+-.+++++++|+||-=. ..|.- .
T Consensus 955 ~~~~l~~--~g~~~~at~g---------ta~~l~~~gi~~~~~~~~~~~~~~~~~~i~~~~i~lvin~~----~~~~~-~ 1018 (1050)
T TIGR01369 955 LARKLAE--KGYKLYATEG---------TAKFLGEAGIKPELVLKVSEGRPNILDLIKNGEIELVINTT----SKGAG-T 1018 (1050)
T ss_pred HHHHHHH--CCCEEEEech---------HHHHHHHCCCceEEEeecCCCCccHHHHHHcCCeEEEEECC----CCCcc-c
Confidence 3344443 3467777663 57789999999887631 2355677889999997532 11222 2
Q ss_pred ccccHHHHHHHHhcCCeEEE
Q 017293 267 KIGTYSLALCAKFHNILFYV 286 (374)
Q Consensus 267 kiGT~~lA~~Ak~~~vPvyV 286 (374)
....|.+=..|-.+|||++-
T Consensus 1019 ~~~g~~iRr~Ai~~~ip~~t 1038 (1050)
T TIGR01369 1019 ATDGYKIRREALDYGVPLIT 1038 (1050)
T ss_pred ccccHHHHHHHHHcCCCEEe
Confidence 44568888999999999984
No 81
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=45.82 E-value=31 Score=27.75 Aligned_cols=87 Identities=18% Similarity=0.265 Sum_probs=53.6
Q ss_pred ccccH-HHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhc---CCCCEEEEcceeeec
Q 017293 185 GYGTA-LGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKD---GRVSAVIVGADRVAA 260 (374)
Q Consensus 185 g~~tv-~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~---~~vd~VlvGAd~i~~ 260 (374)
||+.. ..+++.+.+.+ ..|++.|..|.. .+++.+.|+++.+ -|..=...+++ .+++.|++..+
T Consensus 5 G~g~~~~~i~~~L~~~~--~~vvvid~d~~~------~~~~~~~~~~~i~-gd~~~~~~l~~a~i~~a~~vv~~~~---- 71 (116)
T PF02254_consen 5 GYGRIGREIAEQLKEGG--IDVVVIDRDPER------VEELREEGVEVIY-GDATDPEVLERAGIEKADAVVILTD---- 71 (116)
T ss_dssp S-SHHHHHHHHHHHHTT--SEEEEEESSHHH------HHHHHHTTSEEEE-S-TTSHHHHHHTTGGCESEEEEESS----
T ss_pred cCCHHHHHHHHHHHhCC--CEEEEEECCcHH------HHHHHhccccccc-ccchhhhHHhhcCccccCEEEEccC----
Confidence 45554 45666666633 678888877543 4568888977555 44443444433 45566665554
Q ss_pred CCCeecccccHHHHHHHHhc-C-CeEEEecc
Q 017293 261 NGDTANKIGTYSLALCAKFH-N-ILFYVAAP 289 (374)
Q Consensus 261 nG~v~nkiGT~~lA~~Ak~~-~-vPvyV~a~ 289 (374)
+...+..+++.||.+ + +++++.+.
T Consensus 72 -----~d~~n~~~~~~~r~~~~~~~ii~~~~ 97 (116)
T PF02254_consen 72 -----DDEENLLIALLARELNPDIRIIARVN 97 (116)
T ss_dssp -----SHHHHHHHHHHHHHHTTTSEEEEEES
T ss_pred -----CHHHHHHHHHHHHHHCCCCeEEEEEC
Confidence 677888999999984 3 56666543
No 82
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=45.57 E-value=29 Score=28.72 Aligned_cols=66 Identities=15% Similarity=0.113 Sum_probs=41.9
Q ss_pred HHHHhhCCCCeEEEcch--HHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccCc
Q 017293 221 AFELVHDRIPATLIADS--AAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLT 291 (374)
Q Consensus 221 a~~L~~~GI~vtlI~Ds--av~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~ 291 (374)
+.+|.+.|.++..+.+. +...+.....+..|++..| +.--....-..-.+-.+.+++||+++++..
T Consensus 10 ~~~L~~~~~~vv~~~~~dd~~~~i~~~~~i~avvi~~d-----~~~~~~~~~ll~~i~~~~~~iPVFl~~~~~ 77 (115)
T PF03709_consen 10 AEALEQRGREVVDADSTDDALAIIESFTDIAAVVISWD-----GEEEDEAQELLDKIRERNFGIPVFLLAERD 77 (115)
T ss_dssp HHHHHHTTTEEEEESSHHHHHHHHHCTTTEEEEEEECH-----HHHHHHHHHHHHHHHHHSTT-EEEEEESCC
T ss_pred HHHHHHCCCEEEEeCChHHHHHHHHhCCCeeEEEEEcc-----cccchhHHHHHHHHHHhCCCCCEEEEecCC
Confidence 45788888888887744 4555555688999999988 111111112222344566899999998855
No 83
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=45.32 E-value=62 Score=28.20 Aligned_cols=69 Identities=20% Similarity=0.163 Sum_probs=42.1
Q ss_pred CCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHh
Q 017293 200 GVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKF 279 (374)
Q Consensus 200 g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~ 279 (374)
+...++--.+.+|...|.. .|.-|++.|+++.++. +|.++-+|.....--...++-.|++
T Consensus 23 ~~~~~~~~~~~~~GG~~~n-~a~~l~~LG~~~~~~~-------------------~~~v~i~~~~~~~~~~~~~~~~~~~ 82 (196)
T cd00287 23 GGLVRPGDTEERAGGGAAN-VAVALARLGVSVTLVG-------------------ADAVVISGLSPAPEAVLDALEEARR 82 (196)
T ss_pred CCeEEeceeeecCCCcHHH-HHHHHHHCCCcEEEEE-------------------ccEEEEecccCcHHHHHHHHHHHHH
Confidence 3333444445666666665 4778999999999888 4445444432211223445557888
Q ss_pred cCCeEEEec
Q 017293 280 HNILFYVAA 288 (374)
Q Consensus 280 ~~vPvyV~a 288 (374)
+++|+++=.
T Consensus 83 ~~~~v~~D~ 91 (196)
T cd00287 83 RGVPVVLDP 91 (196)
T ss_pred cCCeEEEeC
Confidence 999977643
No 84
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=45.20 E-value=38 Score=28.80 Aligned_cols=30 Identities=10% Similarity=0.158 Sum_probs=22.1
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCe
Q 017293 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVL 202 (374)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~ 202 (374)
.||+++.+|+||. ...+++.++.|+++|.+
T Consensus 103 ~gDvli~iS~SG~-----s~~vi~a~~~Ak~~G~~ 132 (138)
T PF13580_consen 103 PGDVLIVISNSGN-----SPNVIEAAEEAKERGMK 132 (138)
T ss_dssp TT-EEEEEESSS------SHHHHHHHHHHHHTT-E
T ss_pred CCCEEEEECCCCC-----CHHHHHHHHHHHHCCCE
Confidence 7899999999863 34577889999987754
No 85
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=45.07 E-value=1.8e+02 Score=28.86 Aligned_cols=88 Identities=23% Similarity=0.178 Sum_probs=45.9
Q ss_pred HHHHHHHHHHCCCeeEEEEecCCCCCcchH-hHHHHHhhCCCCeEEEcch---HHHHHHhcCCCCEEEEcceeeec-CCC
Q 017293 189 ALGVIRALHSEGVLERAYCSETRPFNQGSR-LTAFELVHDRIPATLIADS---AAAALMKDGRVSAVIVGADRVAA-NGD 263 (374)
Q Consensus 189 v~~~l~~a~~~g~~~~V~v~EsrP~~eG~~-l~a~~L~~~GI~vtlI~Ds---av~~~m~~~~vd~VlvGAd~i~~-nG~ 263 (374)
...++..+.+.|. +|++.. |.+.+.. +....+...|+++..+.-. .+...+ +++...|++ +.+.. .|.
T Consensus 68 i~~~l~~l~~~gd--~Vl~~~--~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i-~~~~~~v~~--e~~~np~g~ 140 (369)
T cd00614 68 ISTVLLALLKAGD--HVVASD--DLYGGTYRLFERLLPKLGIEVTFVDPDDPEALEAAI-KPETKLVYV--ESPTNPTLK 140 (369)
T ss_pred HHHHHHHHcCCCC--EEEECC--CCcchHHHHHHHHHhhcCeEEEEeCCCCHHHHHHhc-CCCCeEEEE--ECCCCCCCe
Confidence 3445555544443 455543 4554432 2222355789998887533 233333 134445543 33322 232
Q ss_pred eecccccHHHHHHHHhcCCeEEE
Q 017293 264 TANKIGTYSLALCAKFHNILFYV 286 (374)
Q Consensus 264 v~nkiGT~~lA~~Ak~~~vPvyV 286 (374)
+. .+ -.++-+||.+|++++|
T Consensus 141 ~~-dl--~~i~~la~~~g~~liv 160 (369)
T cd00614 141 VV-DI--EAIAELAHEHGALLVV 160 (369)
T ss_pred ec-CH--HHHHHHHHHcCCEEEE
Confidence 22 22 3577789999999887
No 86
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=44.18 E-value=1.8e+02 Score=26.28 Aligned_cols=99 Identities=24% Similarity=0.179 Sum_probs=53.7
Q ss_pred EEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcc---hHHHHHHhcCCC
Q 017293 172 VLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIAD---SAAAALMKDGRV 248 (374)
Q Consensus 172 ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~D---sav~~~m~~~~v 248 (374)
|+..+-+|.+ | ..+++.+.+.+..+++++ |+. -.. .+.+|.+.|+.+....- .++...+ ..+
T Consensus 1 I~V~GatG~~---G----~~v~~~L~~~~~~V~~l~---R~~--~~~-~~~~l~~~g~~vv~~d~~~~~~l~~al--~g~ 65 (233)
T PF05368_consen 1 ILVTGATGNQ---G----RSVVRALLSAGFSVRALV---RDP--SSD-RAQQLQALGAEVVEADYDDPESLVAAL--KGV 65 (233)
T ss_dssp EEEETTTSHH---H----HHHHHHHHHTTGCEEEEE---SSS--HHH-HHHHHHHTTTEEEES-TT-HHHHHHHH--TTC
T ss_pred CEEECCccHH---H----HHHHHHHHhCCCCcEEEE---ecc--chh-hhhhhhcccceEeecccCCHHHHHHHH--cCC
Confidence 4566656543 1 234445444454444443 332 112 25678889987653332 4556667 777
Q ss_pred CEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEecc
Q 017293 249 SAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAP 289 (374)
Q Consensus 249 d~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~ 289 (374)
|.|++--.... ---.-....++-+|+..||+.||...
T Consensus 66 d~v~~~~~~~~----~~~~~~~~~li~Aa~~agVk~~v~ss 102 (233)
T PF05368_consen 66 DAVFSVTPPSH----PSELEQQKNLIDAAKAAGVKHFVPSS 102 (233)
T ss_dssp SEEEEESSCSC----CCHHHHHHHHHHHHHHHT-SEEEESE
T ss_pred ceEEeecCcch----hhhhhhhhhHHHhhhccccceEEEEE
Confidence 77764332221 11122345677889999999999644
No 87
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=43.87 E-value=1.6e+02 Score=34.15 Aligned_cols=71 Identities=17% Similarity=0.135 Sum_probs=50.3
Q ss_pred CeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcc-----hHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHH
Q 017293 201 VLERAYCSETRPFNQGSRLTAFELVHDRIPATLIAD-----SAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLAL 275 (374)
Q Consensus 201 ~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~D-----sav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~ 275 (374)
..|++|.++. |+..|.+.||+|+.+.- ..+--+++++++|.|+--. .|.-. ..-.|.+=.
T Consensus 962 ~g~~~~at~g---------t~~~l~~~gi~~~~v~~~~~~~~~~~~~~~~~~~~~vin~~-----~~~~~-~~~~~~irr 1026 (1068)
T PRK12815 962 LGFKLLATEG---------TANWLAEEGITTGVVEKVQEGSPSLLERIKQHRIVLVVNTS-----LSDSA-SEDAIKIRD 1026 (1068)
T ss_pred CCCEEEEccH---------HHHHHHhCCCeEEEEeeccCCCccHHHHHHcCCeEEEEECC-----CCccc-ccccHHHHH
Confidence 3577777763 67889999999887632 2245667889999997632 23222 234678888
Q ss_pred HHHhcCCeEEE
Q 017293 276 CAKFHNILFYV 286 (374)
Q Consensus 276 ~Ak~~~vPvyV 286 (374)
+|-.+|||++-
T Consensus 1027 ~a~~~~ip~~t 1037 (1068)
T PRK12815 1027 EALSTHIPVFT 1037 (1068)
T ss_pred HHHHcCCCEEe
Confidence 99999999984
No 88
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=43.68 E-value=82 Score=30.68 Aligned_cols=58 Identities=19% Similarity=0.123 Sum_probs=42.6
Q ss_pred HHHHHhcCCCCEEEEcceeeecCCC--------eecccccHHHHHHHHhcCCeEEEeccCccccCC
Q 017293 239 AAALMKDGRVSAVIVGADRVAANGD--------TANKIGTYSLALCAKFHNILFYVAAPLTSIDLT 296 (374)
Q Consensus 239 v~~~m~~~~vd~VlvGAd~i~~nG~--------v~nkiGT~~lA~~Ak~~~vPvyV~a~~~K~~~~ 296 (374)
+..++++.+.|.||=-|--..-|+. .+|-.|+..+|.+|++.|.|++=+..-|=||-.
T Consensus 42 v~~~i~~~~PDvVIn~AAyt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lVhiSTDyVFDG~ 107 (281)
T COG1091 42 VLEVIRETRPDVVINAAAYTAVDKAESEPELAFAVNATGAENLARAAAEVGARLVHISTDYVFDGE 107 (281)
T ss_pred HHHHHHhhCCCEEEECccccccccccCCHHHHHHhHHHHHHHHHHHHHHhCCeEEEeecceEecCC
Confidence 4455555567777666543333432 388999999999999999999998888888743
No 89
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=43.56 E-value=1.7e+02 Score=25.59 Aligned_cols=33 Identities=6% Similarity=-0.037 Sum_probs=24.5
Q ss_pred HHHHhhCCCCeEEEcchHHHHHHhcCCCCEEEEcc
Q 017293 221 AFELVHDRIPATLIADSAAAALMKDGRVSAVIVGA 255 (374)
Q Consensus 221 a~~L~~~GI~vtlI~Dsav~~~m~~~~vd~VlvGA 255 (374)
++.+++.|+++..|++..-+.+- +.+|.+|.-.
T Consensus 121 ~~~ak~~Ga~vI~IT~~~~s~La--~~aD~~l~~~ 153 (177)
T cd05006 121 LEAAKERGMKTIALTGRDGGKLL--ELADIEIHVP 153 (177)
T ss_pred HHHHHHCCCEEEEEeCCCCCchh--hhCCEEEEeC
Confidence 56678899999999987766665 6677776543
No 90
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=43.24 E-value=23 Score=32.80 Aligned_cols=76 Identities=24% Similarity=0.267 Sum_probs=45.3
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCC-CeEEEc-chHHHHHHhc
Q 017293 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRI-PATLIA-DSAAAALMKD 245 (374)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI-~vtlI~-Dsav~~~m~~ 245 (374)
.|++||-.+- | +||.|++ |.... |+..+|+-.|-.|..-. ...+.|.+.|+ +++++. |...++- ..
T Consensus 72 pg~~VLeIGt-G----sGY~aAl--la~lv--g~~g~Vv~vE~~~~l~~--~A~~~l~~~~~~nv~~~~gdg~~g~~-~~ 139 (209)
T PF01135_consen 72 PGDRVLEIGT-G----SGYQAAL--LAHLV--GPVGRVVSVERDPELAE--RARRNLARLGIDNVEVVVGDGSEGWP-EE 139 (209)
T ss_dssp TT-EEEEES--T----TSHHHHH--HHHHH--STTEEEEEEESBHHHHH--HHHHHHHHHTTHSEEEEES-GGGTTG-GG
T ss_pred CCCEEEEecC-C----CcHHHHH--HHHhc--CccceEEEECccHHHHH--HHHHHHHHhccCceeEEEcchhhccc-cC
Confidence 7899998873 3 3677653 22222 56678999998876532 22446788788 577666 5554442 33
Q ss_pred CCCCEEEEcc
Q 017293 246 GRVSAVIVGA 255 (374)
Q Consensus 246 ~~vd~VlvGA 255 (374)
...|.+++++
T Consensus 140 apfD~I~v~~ 149 (209)
T PF01135_consen 140 APFDRIIVTA 149 (209)
T ss_dssp -SEEEEEESS
T ss_pred CCcCEEEEee
Confidence 5677777765
No 91
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=43.20 E-value=96 Score=35.77 Aligned_cols=65 Identities=22% Similarity=0.237 Sum_probs=46.8
Q ss_pred HHHHHhhCCCCeEEEcc-----hHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccC
Q 017293 220 TAFELVHDRIPATLIAD-----SAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPL 290 (374)
Q Consensus 220 ~a~~L~~~GI~vtlI~D-----sav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~ 290 (374)
|++.|.+.||+|+.+.. ..+--+++++++|+||--.. |.- .....|.+=..|-.+|||++--.++
T Consensus 972 T~~~l~~~gi~~~~v~~~~~~~~~i~~~i~~~~idlvIn~~~-----~~~-~~~~g~~iRr~Av~~~ip~~T~~~~ 1041 (1066)
T PRK05294 972 TAKFLREAGIPVELVNKVHEGRPHIVDLIKNGEIDLVINTPT-----GRQ-AIRDGFSIRRAALEYKVPYITTLAG 1041 (1066)
T ss_pred HHHHHHHCCCeeEEEeeccCcCccHHHHHHcCCeEEEEECCC-----Ccc-cccccHHHHHHHHHcCCCEEecHHH
Confidence 56778889999888763 33566677899999986543 321 2345688889999999999954433
No 92
>PRK13937 phosphoheptose isomerase; Provisional
Probab=43.00 E-value=2.5e+02 Score=25.14 Aligned_cols=31 Identities=0% Similarity=-0.049 Sum_probs=21.9
Q ss_pred HHHHhhCCCCeEEEcchHHHHHHhcCCCCEEEE
Q 017293 221 AFELVHDRIPATLIADSAAAALMKDGRVSAVIV 253 (374)
Q Consensus 221 a~~L~~~GI~vtlI~Dsav~~~m~~~~vd~Vlv 253 (374)
++.+.+.|+++..|+...-+.+- +..|.++.
T Consensus 126 ~~~ak~~g~~~I~iT~~~~s~L~--~~ad~~l~ 156 (188)
T PRK13937 126 LEKARELGMKTIGLTGRDGGKMK--ELCDHLLI 156 (188)
T ss_pred HHHHHHCCCeEEEEeCCCCChhH--HhCCEEEE
Confidence 45667888888888876666665 56676664
No 93
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=42.62 E-value=1.4e+02 Score=27.23 Aligned_cols=75 Identities=15% Similarity=0.091 Sum_probs=48.5
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcC-
Q 017293 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDG- 246 (374)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~- 246 (374)
+++.++..+- |.|++ .+..| ..+..-+||..|..|.. .+++.+.+.+.|++-..+.-..+..++...
T Consensus 34 ~g~~l~DIGa-------GtGsi--~iE~a-~~~p~~~v~AIe~~~~a--~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~ 101 (187)
T COG2242 34 PGDRLWDIGA-------GTGSI--TIEWA-LAGPSGRVIAIERDEEA--LELIERNAARFGVDNLEVVEGDAPEALPDLP 101 (187)
T ss_pred CCCEEEEeCC-------CccHH--HHHHH-HhCCCceEEEEecCHHH--HHHHHHHHHHhCCCcEEEEeccchHhhcCCC
Confidence 7899998863 23433 12333 44778899999987654 456777889999986666655566666221
Q ss_pred CCCEEEEc
Q 017293 247 RVSAVIVG 254 (374)
Q Consensus 247 ~vd~VlvG 254 (374)
+.|.+++|
T Consensus 102 ~~daiFIG 109 (187)
T COG2242 102 SPDAIFIG 109 (187)
T ss_pred CCCEEEEC
Confidence 35555554
No 94
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=42.21 E-value=4.2e+02 Score=27.53 Aligned_cols=89 Identities=8% Similarity=0.013 Sum_probs=47.6
Q ss_pred HHHHCCCeeEEEEecCC-CCCcc-hHhHHHHHhhCCCCeEEEc-----c-hHHHHHHhcCCCCEEEEcceeeec-CCCee
Q 017293 195 ALHSEGVLERAYCSETR-PFNQG-SRLTAFELVHDRIPATLIA-----D-SAAAALMKDGRVSAVIVGADRVAA-NGDTA 265 (374)
Q Consensus 195 ~a~~~g~~~~V~v~Esr-P~~eG-~~l~a~~L~~~GI~vtlI~-----D-sav~~~m~~~~vd~VlvGAd~i~~-nG~v~ 265 (374)
.+...|+ +|++.... +...| .++ .+.+...|+.+..+. | ......+ .++...|++-..+.+. +| ..
T Consensus 155 ~~l~~Gd--eVIvs~~e~v~~ggs~~i-~~~~~~~G~~~~~v~~~~~~~l~dle~aI-~~~T~lv~~~h~sN~~~~G-~~ 229 (454)
T TIGR00474 155 NTLAKGK--EVIVSRGELVEIGGSFRI-PDVMEQSGAKLVEVGTTNRTHLKDYEDAI-TENTALLLKVHTSNYRIVG-FT 229 (454)
T ss_pred HHhCCcC--EEEECCChhhhhcchhhH-HHHHHHcCCEEEEeCCCCCCCHHHHHHhc-CcCCEEEEEEccCcccccC-CC
Confidence 4444443 67777543 22222 234 445677899888873 2 1122233 2344444433322221 23 11
Q ss_pred cccccHHHHHHHHhcCCeEEEec
Q 017293 266 NKIGTYSLALCAKFHNILFYVAA 288 (374)
Q Consensus 266 nkiGT~~lA~~Ak~~~vPvyV~a 288 (374)
...---.++-+||.||+|++|=+
T Consensus 230 ~~~dl~~I~~la~~~g~~vivD~ 252 (454)
T TIGR00474 230 EEVSIAELVALGREHGLPVMEDL 252 (454)
T ss_pred CCCCHHHHHHHHHHcCCeEEEEC
Confidence 23445678889999999999954
No 95
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=41.71 E-value=2.4e+02 Score=24.70 Aligned_cols=32 Identities=19% Similarity=0.130 Sum_probs=25.2
Q ss_pred HHHHhhCCCCeEEEcchHHHHHHhcCCCCEEEEc
Q 017293 221 AFELVHDRIPATLIADSAAAALMKDGRVSAVIVG 254 (374)
Q Consensus 221 a~~L~~~GI~vtlI~Dsav~~~m~~~~vd~VlvG 254 (374)
++.+.+.|+++..|+|+.-+.+- ...|.++.-
T Consensus 95 ~~~ak~~g~~iI~IT~~~~s~la--~~ad~~l~~ 126 (179)
T cd05005 95 AEKAKKAGAKVVLITSNPDSPLA--KLADVVVVI 126 (179)
T ss_pred HHHHHHCCCeEEEEECCCCCchH--HhCCEEEEe
Confidence 56678899999999998777776 667877653
No 96
>PRK07582 cystathionine gamma-lyase; Validated
Probab=41.55 E-value=1.1e+02 Score=30.56 Aligned_cols=81 Identities=21% Similarity=0.112 Sum_probs=46.3
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcchHhHHH-HHhhCCCCeEEEcchHHH-HHHhcCCCCEEEEcceeeecCCCeecccc
Q 017293 192 VIRALHSEGVLERAYCSETRPFNQGSRLTAF-ELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIG 269 (374)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~-~L~~~GI~vtlI~Dsav~-~~m~~~~vd~VlvGAd~i~~nG~v~nkiG 269 (374)
++....+.| -+|++.+ |.+.+.+..++ .|...|+++..++...-. ..+ ++.+.|++- . .-|..|
T Consensus 81 ~l~all~~G--d~Vl~~~--~~y~~~~~~~~~~l~~~G~~v~~v~~~~~~~~~~--~~t~lV~le--~------p~NPtg 146 (366)
T PRK07582 81 VLRALLRPG--DTVVVPA--DGYYQVRALAREYLAPLGVTVREAPTAGMAEAAL--AGADLVLAE--T------PSNPGL 146 (366)
T ss_pred HHHHhcCCC--CEEEEeC--CCcHhHHHHHHHHHhcCeEEEEEECCCChHHHhc--cCceEEEEE--C------CCCCCC
Confidence 333434434 4666653 55545433333 356789999998744222 333 566666652 2 223333
Q ss_pred ----cHHHHHHHHhcCCeEEE
Q 017293 270 ----TYSLALCAKFHNILFYV 286 (374)
Q Consensus 270 ----T~~lA~~Ak~~~vPvyV 286 (374)
-..++-+|+.+|++++|
T Consensus 147 ~v~di~~I~~~a~~~g~~lvV 167 (366)
T PRK07582 147 DVCDLAALAAAAHAAGALLVV 167 (366)
T ss_pred CccCHHHHHHHHHHcCCEEEE
Confidence 34677788899998776
No 97
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=40.76 E-value=57 Score=25.90 Aligned_cols=42 Identities=5% Similarity=0.010 Sum_probs=27.8
Q ss_pred HhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEe
Q 017293 243 MKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (374)
Q Consensus 243 m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~ 287 (374)
..+.++|+|++|+..--. .-...-+...--++++...||+|+
T Consensus 98 ~~~~~~dliv~G~~~~~~---~~~~~~gs~~~~l~~~~~~pVlvv 139 (140)
T PF00582_consen 98 AEEHNADLIVMGSRGRSG---LERLLFGSVAEKLLRHAPCPVLVV 139 (140)
T ss_dssp HHHTTCSEEEEESSSTTS---TTTSSSHHHHHHHHHHTSSEEEEE
T ss_pred cccccceeEEEeccCCCC---ccCCCcCCHHHHHHHcCCCCEEEe
Confidence 356899999999998322 222223334445577788999986
No 98
>PF06849 DUF1246: Protein of unknown function (DUF1246); InterPro: IPR010672 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []. Archaea do not appear to posses PurH, however, and perform these reactions by a different mecahnism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the N-terminal domain of PurP. Its function is not known, though it is almost always found in association with IPR009720 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2PBZ_C 2R85_B 2R87_E 2R84_A 2R86_A 2R7L_A 2R7N_A 2R7K_A 2R7M_A.
Probab=40.74 E-value=32 Score=29.34 Aligned_cols=85 Identities=18% Similarity=0.228 Sum_probs=47.6
Q ss_pred cccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCC-CCeEEEcchH-------HHHHHhcCCCCEEEE
Q 017293 182 ATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDR-IPATLIADSA-------AAALMKDGRVSAVIV 253 (374)
Q Consensus 182 at~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~G-I~vtlI~Dsa-------v~~~m~~~~vd~Vlv 253 (374)
+|.||.+++.+++-|++.|-+--++|-..|+.. ..+.+ ++-.++.|+- +.--| .+=|.+
T Consensus 2 ~tlaSHSALqIl~GAk~EGFrT~~ic~~~r~~~---------Y~~f~~iDe~i~~d~f~di~~~~~q~~L--~~~N~I-- 68 (124)
T PF06849_consen 2 ATLASHSALQILDGAKDEGFRTIAICQKGREKF---------YRRFPFIDEVIVLDSFSDILSEEVQEKL--REMNAI-- 68 (124)
T ss_dssp EEESSTTHHHHHHHHHHTT--EEEEEETTCHHH---------HHTTTT-SEEEEESSCGHCCSHHHHHHH--HHTTEE--
T ss_pred eeeechHHHHHhhhHHHcCCcEEEEECCCCcch---------hhhcCcCcEEEEeCCHHHHHhHHHHHHH--HHCCeE--
Confidence 556678899999999999988777777665321 22333 4445555522 22223 234555
Q ss_pred cceeeecCCCeecccccHHHHHHHHhcCCeEEE
Q 017293 254 GADRVAANGDTANKIGTYSLALCAKFHNILFYV 286 (374)
Q Consensus 254 GAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV 286 (374)
+.+||+.+.-+|.-.+ -+.+.||++-
T Consensus 69 ----~VPhgSfv~Y~G~d~i---e~~~~vP~FG 94 (124)
T PF06849_consen 69 ----FVPHGSFVAYVGYDRI---ENEFKVPIFG 94 (124)
T ss_dssp ----E--BTTHHHHH-HHHH---HHT-SS-EES
T ss_pred ----EecCCCeeEeecHHHH---hhcCCCCeec
Confidence 4589988888876542 3557888764
No 99
>CHL00194 ycf39 Ycf39; Provisional
Probab=40.43 E-value=1.5e+02 Score=28.57 Aligned_cols=90 Identities=17% Similarity=0.104 Sum_probs=50.9
Q ss_pred HHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEE--cc-hHHHHHHhcCCCCEEEEcceeeecCCC---e
Q 017293 191 GVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLI--AD-SAAAALMKDGRVSAVIVGADRVAANGD---T 264 (374)
Q Consensus 191 ~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI--~D-sav~~~m~~~~vd~VlvGAd~i~~nG~---v 264 (374)
.+++.+.++|.. |.+.- |.. .+ +..|...|+++... .| ..+...+ ..+|.|+--+.....+.. -
T Consensus 15 ~lv~~Ll~~g~~--V~~l~-R~~---~~--~~~l~~~~v~~v~~Dl~d~~~l~~al--~g~d~Vi~~~~~~~~~~~~~~~ 84 (317)
T CHL00194 15 QIVRQALDEGYQ--VRCLV-RNL---RK--ASFLKEWGAELVYGDLSLPETLPPSF--KGVTAIIDASTSRPSDLYNAKQ 84 (317)
T ss_pred HHHHHHHHCCCe--EEEEE-cCh---HH--hhhHhhcCCEEEECCCCCHHHHHHHH--CCCCEEEECCCCCCCCccchhh
Confidence 355666777754 44442 321 11 22344557655431 23 3455667 789988865432222211 2
Q ss_pred ecccccHHHHHHHHhcCCeEEEeccC
Q 017293 265 ANKIGTYSLALCAKFHNILFYVAAPL 290 (374)
Q Consensus 265 ~nkiGT~~lA~~Ak~~~vPvyV~a~~ 290 (374)
+|..|+..+.-+|++.++.-+|...+
T Consensus 85 ~~~~~~~~l~~aa~~~gvkr~I~~Ss 110 (317)
T CHL00194 85 IDWDGKLALIEAAKAAKIKRFIFFSI 110 (317)
T ss_pred hhHHHHHHHHHHHHHcCCCEEEEecc
Confidence 46678899999999999876665444
No 100
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=40.35 E-value=22 Score=34.16 Aligned_cols=38 Identities=13% Similarity=0.142 Sum_probs=22.3
Q ss_pred CCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccC
Q 017293 246 GRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPL 290 (374)
Q Consensus 246 ~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~ 290 (374)
+++|.+++..|....+. ...+...+.++++|+|...+.
T Consensus 183 ~~~da~~~~~~~~~~~~-------~~~i~~~~~~~~iPv~~~~~~ 220 (294)
T PF04392_consen 183 EKVDALYLLPDNLVDSN-------FEAILQLANEAKIPVFGSSDF 220 (294)
T ss_dssp TT-SEEEE-S-HHHHHT-------HHHHHHHCCCTT--EEESSHH
T ss_pred ccCCEEEEECCcchHhH-------HHHHHHHHHhcCCCEEECCHH
Confidence 78899988876654322 222667889999999986543
No 101
>TIGR00075 hypD hydrogenase expression/formation protein HypD. HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes. This protein has been found in gram-negative and gram-positive bacteria and Archaea.
Probab=40.34 E-value=1.8e+02 Score=29.35 Aligned_cols=48 Identities=27% Similarity=0.278 Sum_probs=38.9
Q ss_pred cchHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEe
Q 017293 235 ADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (374)
Q Consensus 235 ~Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~ 287 (374)
+-.++.++|+.+++ .-|+...=|+|..-+|+-.---++++|++|++|.
T Consensus 177 ~PPa~~~ll~~~~~-----~idgfi~PGHVs~I~G~~~y~~l~~~y~~P~VVa 224 (369)
T TIGR00075 177 VPPAVEALLENPAV-----QIDAFLAPGHVSTIIGAKPYAPIAEKYKIPIVIA 224 (369)
T ss_pred cHHHHHHHHcCCCC-----CccEEEecCEEEEEeccchhHHHHHHcCCCeEEe
Confidence 45677888855432 2377788899999999999999999999999985
No 102
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=40.07 E-value=2.4e+02 Score=24.61 Aligned_cols=33 Identities=12% Similarity=-0.022 Sum_probs=26.9
Q ss_pred HHHHhhCCCCeEEEcchHHHHHHhcCCCCEEEEcc
Q 017293 221 AFELVHDRIPATLIADSAAAALMKDGRVSAVIVGA 255 (374)
Q Consensus 221 a~~L~~~GI~vtlI~Dsav~~~m~~~~vd~VlvGA 255 (374)
++.+++.|+++..|+++.-+.+- +.+|.++.-.
T Consensus 92 ~~~ak~~g~~ii~IT~~~~s~la--~~ad~~l~~~ 124 (179)
T TIGR03127 92 AKKAKEIGATVAAITTNPESTLG--KLADVVVEIP 124 (179)
T ss_pred HHHHHHCCCeEEEEECCCCCchH--HhCCEEEEeC
Confidence 55678899999999998888877 7888877643
No 103
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=40.07 E-value=1.6e+02 Score=27.02 Aligned_cols=70 Identities=20% Similarity=0.242 Sum_probs=38.2
Q ss_pred ccHHH-HHHHHHHCCCeeEEEE-ecCCCCCcchHhHHHHHhhCCCCeEEEc----------chHHHHHHhcCCCCEEEE-
Q 017293 187 GTALG-VIRALHSEGVLERAYC-SETRPFNQGSRLTAFELVHDRIPATLIA----------DSAAAALMKDGRVSAVIV- 253 (374)
Q Consensus 187 ~tv~~-~l~~a~~~g~~~~V~v-~EsrP~~eG~~l~a~~L~~~GI~vtlI~----------Dsav~~~m~~~~vd~Vlv- 253 (374)
|+... ++....+.+....|.+ .-.+|...+. ....+.|||+..+. |..+...++..++|.+++
T Consensus 12 gs~~~~ll~~~~~~~~~~~I~~vvs~~~~~~~~----~~a~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~iv~~ 87 (200)
T PRK05647 12 GSNLQAIIDACAAGQLPAEIVAVISDRPDAYGL----ERAEAAGIPTFVLDHKDFPSREAFDAALVEALDAYQPDLVVLA 87 (200)
T ss_pred ChhHHHHHHHHHcCCCCcEEEEEEecCccchHH----HHHHHcCCCEEEECccccCchhHhHHHHHHHHHHhCcCEEEhH
Confidence 45444 4444444333444332 2333444332 23567899998866 334455566678998876
Q ss_pred cceeeec
Q 017293 254 GADRVAA 260 (374)
Q Consensus 254 GAd~i~~ 260 (374)
|-..++.
T Consensus 88 ~~~~ii~ 94 (200)
T PRK05647 88 GFMRILG 94 (200)
T ss_pred HhhhhCC
Confidence 4445543
No 104
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=39.71 E-value=1.8e+02 Score=29.19 Aligned_cols=102 Identities=22% Similarity=0.153 Sum_probs=61.6
Q ss_pred CCcEEEEecCCCcccccccc-cHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEc-ch--HHHHHH
Q 017293 168 SKFSVLTHCNTGSLATAGYG-TALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIA-DS--AAAALM 243 (374)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~-tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~-Ds--av~~~m 243 (374)
.+..|-.||-|. |-- .+..+++...+++...+|.++-+.|. |.++ +..+...++.+.+.| |. .+..++
T Consensus 49 ~~~~iW~Ha~s~-----Ge~~~~~~l~~~l~~~~~~~~i~~t~~t~~--~~~~-~~~~~~~~~~~~~~P~d~~~~~~~~l 120 (425)
T PRK05749 49 KGPLIWFHAVSV-----GETRAAIPLIRALRKRYPDLPILVTTMTPT--GSER-AQALFGDDVEHRYLPYDLPGAVRRFL 120 (425)
T ss_pred CCCeEEEEeCCH-----HHHHHHHHHHHHHHHhCCCCcEEEeCCCcc--HHHH-HHHhcCCCceEEEecCCcHHHHHHHH
Confidence 456799998762 211 23345566666677788877765433 4454 334445578888877 43 556677
Q ss_pred hcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEec
Q 017293 244 KDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAA 288 (374)
Q Consensus 244 ~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a 288 (374)
++-+.|.|++.- +. .. ..+...|+..++|++++.
T Consensus 121 ~~~~Pd~v~~~~------~~----~~-~~~l~~~~~~~ip~vl~~ 154 (425)
T PRK05749 121 RFWRPKLVIIME------TE----LW-PNLIAELKRRGIPLVLAN 154 (425)
T ss_pred HhhCCCEEEEEe------cc----hh-HHHHHHHHHCCCCEEEEe
Confidence 777889886431 11 11 112335788999999864
No 105
>PRK04425 Maf-like protein; Reviewed
Probab=39.63 E-value=1.9e+02 Score=26.57 Aligned_cols=79 Identities=24% Similarity=0.211 Sum_probs=48.5
Q ss_pred CCCeeEEEEe---cCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCCCCEEEEcceeeec-CCCeecccccHHHH
Q 017293 199 EGVLERAYCS---ETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAA-NGDTANKIGTYSLA 274 (374)
Q Consensus 199 ~g~~~~V~v~---EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~vd~VlvGAd~i~~-nG~v~nkiGT~~lA 274 (374)
.|..|.|+.. |+.+..+..+-++.+|+..... .+. +..-+.+++|||.|+. ||.++.|=.+..-|
T Consensus 23 ~g~~f~v~~~~iDE~~~~~~~p~~~~~~lA~~KA~----------~v~-~~~~~~lvI~aDTvV~~~g~ilgKP~~~eeA 91 (196)
T PRK04425 23 LGIAFQAASPDFDETPMLGESAPQTALRLAEGKAR----------SLT-GRFPEALIVGADQVAWCDGRQWGKPMNLANA 91 (196)
T ss_pred CCCCeEEECCCCCCCCCCCCCHHHHHHHHHHHHHH----------HHH-hhCCCCEEEEeCeEEEECCEEecCCCCHHHH
Confidence 3888887743 5433333222234555543211 111 1234779999999774 88899999998776
Q ss_pred --HHHHhcCCeEEEec
Q 017293 275 --LCAKFHNILFYVAA 288 (374)
Q Consensus 275 --~~Ak~~~vPvyV~a 288 (374)
++-+..|.+..|.+
T Consensus 92 ~~~L~~lsg~~h~v~T 107 (196)
T PRK04425 92 QKMLMHLSGREIEFYS 107 (196)
T ss_pred HHHHHHhCCCcEEEEE
Confidence 46666777666643
No 106
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=39.57 E-value=68 Score=31.18 Aligned_cols=63 Identities=10% Similarity=0.081 Sum_probs=36.7
Q ss_pred cccHHHHHHHHHHCCC-eeEEEEecC-CCCCcchHhHHHHHhhCCCCeEEEc---------chHHHHHHhcCCCCEEEEc
Q 017293 186 YGTALGVIRALHSEGV-LERAYCSET-RPFNQGSRLTAFELVHDRIPATLIA---------DSAAAALMKDGRVSAVIVG 254 (374)
Q Consensus 186 ~~tv~~~l~~a~~~g~-~~~V~v~Es-rP~~eG~~l~a~~L~~~GI~vtlI~---------Dsav~~~m~~~~vd~VlvG 254 (374)
.|+.+..|..+.+.|. ..+|.++=| +|...+ ...+.|||+.+++ |..+...++..++|.+++.
T Consensus 99 ~g~nl~al~~~~~~~~~~~~i~~visn~~~~~~------lA~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivla 172 (286)
T PRK13011 99 FDHCLNDLLYRWRIGELPMDIVGVVSNHPDLEP------LAAWHGIPFHHFPITPDTKPQQEAQVLDVVEESGAELVVLA 172 (286)
T ss_pred CcccHHHHHHHHHcCCCCcEEEEEEECCccHHH------HHHHhCCCEEEeCCCcCchhhhHHHHHHHHHHhCcCEEEEe
Confidence 3566666666666664 344443322 664322 1456799999873 2334555666789987664
No 107
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=38.98 E-value=67 Score=32.95 Aligned_cols=78 Identities=18% Similarity=0.198 Sum_probs=45.0
Q ss_pred cEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHh-hCCCCeEEEcchHHHHHHhcCCC
Q 017293 170 FSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELV-HDRIPATLIADSAAAALMKDGRV 248 (374)
Q Consensus 170 ~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~-~~GI~vtlI~Dsav~~~m~~~~v 248 (374)
..||..+++| .-..+...+++.+...+||+ .|.+.|... +. ...+++...--.++..+.++.++
T Consensus 5 ~kvLviG~g~--------rehal~~~~~~~~~~~~~~~---~pgn~g~~~----~~~~~~~~~~~~d~~~l~~~a~~~~i 69 (426)
T PRK13789 5 LKVLLIGSGG--------RESAIAFALRKSNLLSELKV---FPGNGGFPD----DELLPADSFSILDKSSVQSFLKSNPF 69 (426)
T ss_pred cEEEEECCCH--------HHHHHHHHHHhCCCCCEEEE---ECCchHHhc----cccccccCcCcCCHHHHHHHHHHcCC
Confidence 5799998653 23345566667776678887 455555311 11 11122222222344555667789
Q ss_pred CEEEEcceeeecCC
Q 017293 249 SAVIVGADRVAANG 262 (374)
Q Consensus 249 d~VlvGAd~i~~nG 262 (374)
|.|++|.+..+..|
T Consensus 70 D~Vv~g~E~~l~~g 83 (426)
T PRK13789 70 DLIVVGPEDPLVAG 83 (426)
T ss_pred CEEEECCchHHHHH
Confidence 99999987765444
No 108
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=38.57 E-value=2e+02 Score=22.93 Aligned_cols=62 Identities=13% Similarity=0.102 Sum_probs=37.6
Q ss_pred HHhhCCCCeEEEcchH----HHHHHhcCCCCEEEEcceeeecCCCeec-ccccHHHHHHHHhcCCeEEEe
Q 017293 223 ELVHDRIPATLIADSA----AAALMKDGRVSAVIVGADRVAANGDTAN-KIGTYSLALCAKFHNILFYVA 287 (374)
Q Consensus 223 ~L~~~GI~vtlI~Dsa----v~~~m~~~~vd~VlvGAd~i~~nG~v~n-kiGT~~lA~~Ak~~~vPvyV~ 287 (374)
.+.+.|+++..+.+.. +..+....++|.+++|+++= |.+-. -.|+..--++-+.-+.||.|+
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~dllviG~~~~---~~~~~~~~Gs~~~~v~~~a~~~~v~v~ 123 (124)
T cd01987 57 LAEELGAEVVTLPGDDVAEAIVEFAREHNVTQIVVGKSRR---SRWRELFRGSLVDRLLRRAGNIDVHIV 123 (124)
T ss_pred HHHHcCCEEEEEeCCcHHHHHHHHHHHcCCCEEEeCCCCC---chHHHHhcccHHHHHHHhCCCCeEEEe
Confidence 3556788876665432 33344567899999999864 22222 345544444333348898886
No 109
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=38.45 E-value=2.1e+02 Score=28.86 Aligned_cols=48 Identities=29% Similarity=0.290 Sum_probs=39.3
Q ss_pred cchHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEe
Q 017293 235 ADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (374)
Q Consensus 235 ~Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~ 287 (374)
+-.++.++++.+.. .-|++..=|+|..-+|+-.-.-++++|++|+.|.
T Consensus 171 ~PPa~~~ll~~~~~-----~idgfi~PGHVstI~G~~~y~~l~~~y~~P~VVa 218 (364)
T PRK15062 171 VPPAMRALLEDPEL-----RIDGFIAPGHVSTIIGTEPYEFLAEEYGIPVVVA 218 (364)
T ss_pred cHHHHHHHHcCCCC-----CccEEEecCEeEEEeccchhHHHHHHcCCCeEEe
Confidence 34577788855543 5577778899999999999999999999999985
No 110
>TIGR03599 YloV DAK2 domain fusion protein YloV. This model describes a protein family that contains an N-terminal DAK2 domain (pfam02734), so named because of similarity to the dihydroxyacetone kinase family family. The GTP-binding protein CgtA (a member of the obg family) is a bacterial GTPase associated with ribosome biogenesis, and it has a characteristic extension (TIGR03595) in certain lineages. This protein family described here was found, by the method of partial phylognetic profiling, to have a phylogenetic distribution strongly correlated to that of TIGR03595. This correlation implies some form of functional coupling.
Probab=38.40 E-value=5.2e+02 Score=27.52 Aligned_cols=102 Identities=22% Similarity=0.176 Sum_probs=65.9
Q ss_pred cChHHHHHHHHh---ccccCcH-HHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHh--CCCCcccHHHHHHHH
Q 017293 41 RDSADGWSAIRE---MVVRGAP-AIAMAAALSLAVEVFNLNAFSGTAADAASFLGNKLEYLVS--SRPTAVNLSDAAAKL 114 (374)
Q Consensus 41 ~~~~~v~~aI~~---m~VrGA~-ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l~~~~~~L~~--~RPt~v~l~nai~~~ 114 (374)
.++.++..++.. |..||.+ .|-.....+++..+... ..-+..+|...++...+.+.+ .+|.--.|--+++-.
T Consensus 53 ~~~~~~~~~~a~~~l~garGnSGvIlsq~f~g~a~~l~~~--~~~~~~~l~~al~~a~~~a~~av~~pgegTmLdvl~~a 130 (530)
T TIGR03599 53 GSVGEVAKALAKGLLMGARGNSGVILSQIFRGFAKALEDK--EELDAEDLAAAFQEAVETAYKAVMKPVEGTILTVLREA 130 (530)
T ss_pred CCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhccC--CCCCHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 467778777765 6678874 34333455666665542 234678888999998888886 567766777777776
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHH
Q 017293 115 KEIISKAAATASEANSVFQAYIEAAEIMLK 144 (374)
Q Consensus 115 ~~~i~~~~~~~~~~~e~~~~l~~~~~~~~~ 144 (374)
-+.+++......+..++.+...+.+++-.+
T Consensus 131 aea~~~~~~~~~~~~e~l~~a~~aA~~al~ 160 (530)
T TIGR03599 131 AEAAEKAAEEGDDLEEVMEAAVEAAEKALA 160 (530)
T ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Confidence 666655433345666666666666655443
No 111
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=38.15 E-value=1.5e+02 Score=27.84 Aligned_cols=85 Identities=18% Similarity=0.152 Sum_probs=52.9
Q ss_pred ccHHHHHHHHHHCCCeeEEEEecCCCCCcch---HhHHHHHhhCCCCeE-EEcchHHHHHHhcCCCCEEEEcceeeecCC
Q 017293 187 GTALGVIRALHSEGVLERAYCSETRPFNQGS---RLTAFELVHDRIPAT-LIADSAAAALMKDGRVSAVIVGADRVAANG 262 (374)
Q Consensus 187 ~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~---~l~a~~L~~~GI~vt-lI~Dsav~~~m~~~~vd~VlvGAd~i~~nG 262 (374)
.....+|..+.+.....+++|=+ -|...+. ++. .++.. ...+. +..+.....+| ..+|.|++ -|
T Consensus 140 ~~~~~~l~~~~~~~p~~~lvvK~-HP~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~Ll--~~s~~Vvt------in- 207 (269)
T PF05159_consen 140 ADFLDMLESFAKENPDAKLVVKP-HPDERGGNKYSYL-EELPN-LPNVVIIDDDVNLYELL--EQSDAVVT------IN- 207 (269)
T ss_pred hHHHHHHHHHHHHCCCCEEEEEE-CchhhCCCChhHh-hhhhc-CCCeEEECCCCCHHHHH--HhCCEEEE------EC-
Confidence 35667787776665567776655 5642221 221 12322 33444 45566778889 88998843 23
Q ss_pred CeecccccHHHHHHHHhcCCeEEEeccCc
Q 017293 263 DTANKIGTYSLALCAKFHNILFYVAAPLT 291 (374)
Q Consensus 263 ~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~ 291 (374)
+++++=|-.+|+||+++..++
T Consensus 208 --------StvGlEAll~gkpVi~~G~~~ 228 (269)
T PF05159_consen 208 --------STVGLEALLHGKPVIVFGRAF 228 (269)
T ss_pred --------CHHHHHHHHcCCceEEecCcc
Confidence 346677888999999987654
No 112
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=37.99 E-value=4.1e+02 Score=26.27 Aligned_cols=16 Identities=31% Similarity=0.260 Sum_probs=13.7
Q ss_pred HHHHHHHHhcCCeEEE
Q 017293 271 YSLALCAKFHNILFYV 286 (374)
Q Consensus 271 ~~lA~~Ak~~~vPvyV 286 (374)
-.++-+||.||+|+++
T Consensus 169 ~~i~~~a~~~gi~viv 184 (363)
T TIGR01437 169 EDAAQVAQEHNLPLIV 184 (363)
T ss_pred HHHHHHHHHcCCeEEE
Confidence 4578899999999987
No 113
>PF11814 DUF3335: Peptidase_C39 like family; InterPro: IPR021770 This family of proteins are functionally uncharacterised. This family is only found in bacteria. This presumed domain is typically between 226 to 230 amino acids in length.
Probab=37.85 E-value=1.3e+02 Score=27.99 Aligned_cols=68 Identities=18% Similarity=0.222 Sum_probs=47.3
Q ss_pred HHHHHHHHCCCeeEEEEecCCCCC-cchHh-------------HHHHHhhCCCCeEEEc--chHHHHHHhcCCCCEEEEc
Q 017293 191 GVIRALHSEGVLERAYCSETRPFN-QGSRL-------------TAFELVHDRIPATLIA--DSAAAALMKDGRVSAVIVG 254 (374)
Q Consensus 191 ~~l~~a~~~g~~~~V~v~EsrP~~-eG~~l-------------~a~~L~~~GI~vtlI~--Dsav~~~m~~~~vd~VlvG 254 (374)
++=.+|++.|-+.+|++....|.+ +|.|- +..++.+.||++.+-+ -+.+...++++.+=.|+|.
T Consensus 58 GLAlAA~rrG~~vev~~~~~~plfld~vr~~~kk~v~~~v~~~f~~~a~~~gv~~~~~~~~~~~l~~~l~~G~~~lvLIS 137 (207)
T PF11814_consen 58 GLALAAARRGFKVEVWVSTDGPLFLDSVRSEEKKEVMELVHEDFREEAEQAGVPVHYRPLSLADLRAALAAGAIVLVLIS 137 (207)
T ss_pred HHHHHHHHcCCceEEEECCCCCceeccCCCHHHHHHHHHHHHHHHHHHHHCCCceecCCCCHHHHHHHHHCCCEEEEEEe
Confidence 333567788999999999888875 33221 2445778999999844 4667777877777777775
Q ss_pred ceee
Q 017293 255 ADRV 258 (374)
Q Consensus 255 Ad~i 258 (374)
.-++
T Consensus 138 ~y~~ 141 (207)
T PF11814_consen 138 TYRM 141 (207)
T ss_pred eccc
Confidence 4443
No 114
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=37.82 E-value=3.7e+02 Score=27.21 Aligned_cols=88 Identities=9% Similarity=0.050 Sum_probs=45.7
Q ss_pred HHHHHHHHHHCCCeeEEEEecCCCCCcc-hHhHHHHHhhCCCCeEEEcch---HHHHHHhcCCCCEEEEcceeee-cCCC
Q 017293 189 ALGVIRALHSEGVLERAYCSETRPFNQG-SRLTAFELVHDRIPATLIADS---AAAALMKDGRVSAVIVGADRVA-ANGD 263 (374)
Q Consensus 189 v~~~l~~a~~~g~~~~V~v~EsrP~~eG-~~l~a~~L~~~GI~vtlI~Ds---av~~~m~~~~vd~VlvGAd~i~-~nG~ 263 (374)
+..++....+.| -+|++... .+.+ ..++...+...|++++++... .+...+ +++...|++ +... ..|.
T Consensus 98 i~~~l~all~~G--d~Vl~~~~--~~~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~ai-~~~tklV~~--esp~Nptg~ 170 (403)
T PRK07810 98 VFTALGALLGAG--DRLVAARS--LFGSCFVVCNEILPRWGVETVFVDGEDLSQWEEAL-SVPTQAVFF--ETPSNPMQS 170 (403)
T ss_pred HHHHHHHHhCCC--CEEEEccC--CcchHHHHHHHHHHHcCcEEEEECCCCHHHHHHhc-CcCceEEEE--ECCCCCCCe
Confidence 334444444444 36776653 2222 233344467789999988632 233333 234444433 1111 2333
Q ss_pred eecccccHHHHHHHHhcCCeEEE
Q 017293 264 TANKIGTYSLALCAKFHNILFYV 286 (374)
Q Consensus 264 v~nkiGT~~lA~~Ak~~~vPvyV 286 (374)
+.. --.++-+||+++++|+|
T Consensus 171 v~d---l~~I~~la~~~g~~viv 190 (403)
T PRK07810 171 LVD---IAAVSELAHAAGAKVVL 190 (403)
T ss_pred ecC---HHHHHHHHHHcCCEEEE
Confidence 332 34577789999999886
No 115
>PRK05443 polyphosphate kinase; Provisional
Probab=37.27 E-value=60 Score=35.65 Aligned_cols=48 Identities=8% Similarity=0.056 Sum_probs=33.6
Q ss_pred ccHHHHHHHHHHCCCeeEEEEecCCCCCcchHh-HHHHHhhCCCCeEEE
Q 017293 187 GTALGVIRALHSEGVLERAYCSETRPFNQGSRL-TAFELVHDRIPATLI 234 (374)
Q Consensus 187 ~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l-~a~~L~~~GI~vtlI 234 (374)
+.+...|..|.++|++.+|+|--..+..+.... .+++|.+.|+.|.+-
T Consensus 380 s~iv~aL~~Aa~~Gk~V~vlve~karfde~~n~~~~~~L~~aGv~V~y~ 428 (691)
T PRK05443 380 SPIVDALIEAAENGKQVTVLVELKARFDEEANIRWARRLEEAGVHVVYG 428 (691)
T ss_pred HHHHHHHHHHHHcCCEEEEEEccCccccHHHHHHHHHHHHHcCCEEEEc
Confidence 566777778888899988887665555442222 366788999998663
No 116
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=37.14 E-value=70 Score=26.23 Aligned_cols=53 Identities=25% Similarity=0.275 Sum_probs=33.2
Q ss_pred CCCeEEEcchHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEecc
Q 017293 228 RIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAP 289 (374)
Q Consensus 228 GI~vtlI~Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~ 289 (374)
|+++....|......+ .+=|.+|+ +..+|. ..-+...+-.||+.|+|+++++.
T Consensus 26 ~~~~~~~~~~~~~~~~--~~~dl~I~----iS~SG~---t~e~i~~~~~a~~~g~~iI~IT~ 78 (119)
T cd05017 26 KIPVYVVKDYTLPAFV--DRKTLVIA----VSYSGN---TEETLSAVEQAKERGAKIVAITS 78 (119)
T ss_pred CCCEEEecCccCcCCC--CCCCEEEE----EECCCC---CHHHHHHHHHHHHCCCEEEEEeC
Confidence 7777777775433333 44455543 344552 23355666789999999999875
No 117
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=37.10 E-value=43 Score=33.57 Aligned_cols=50 Identities=8% Similarity=0.003 Sum_probs=30.5
Q ss_pred ccccHHHHHHHHHHCCCeeEEEEecCCCCC-cchHh-HHHHHhhCCCCeEEEc
Q 017293 185 GYGTALGVIRALHSEGVLERAYCSETRPFN-QGSRL-TAFELVHDRIPATLIA 235 (374)
Q Consensus 185 g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~-eG~~l-~a~~L~~~GI~vtlI~ 235 (374)
+-|.+...|..|.++||+.+|+| |=+-.+ |...+ -|++|.+.|+.|.|=.
T Consensus 48 ~~S~iv~aLi~AA~nGK~Vtv~v-ELkARFDEe~Ni~Wa~~Le~aGv~ViyG~ 99 (352)
T PF13090_consen 48 SNSPIVNALIEAAENGKQVTVLV-ELKARFDEENNIHWAKRLEEAGVHVIYGV 99 (352)
T ss_dssp TT-HHHHHHHHHHHTT-EEEEEE-STTSSSTTCCCCCCCHHHHHCT-EEEE--
T ss_pred CCCHHHHHHHHHHHcCCEEEEEE-EEeccccHHHHhHHHhhHHhcCeEEEcCC
Confidence 44667777888888899988875 544443 22222 2568999999988743
No 118
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=37.00 E-value=31 Score=28.84 Aligned_cols=40 Identities=13% Similarity=0.084 Sum_probs=30.0
Q ss_pred HHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEe
Q 017293 242 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (374)
Q Consensus 242 ~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~ 287 (374)
...+.++|++++|.++ + ...+.| ....-+.++-++||+|+
T Consensus 98 ~a~~~~~DLIV~Gs~~----~-~~~~lg-Sva~~v~~~a~~pVLvv 137 (144)
T PRK15118 98 AIKKYDMDLVVCGHHQ----D-FWSKLM-SSARQLINTVHVDMLIV 137 (144)
T ss_pred HHHHhCCCEEEEeCcc----c-HHHHHH-HHHHHHHhhCCCCEEEe
Confidence 3356799999999985 2 334578 45556788899999997
No 119
>PRK05939 hypothetical protein; Provisional
Probab=36.68 E-value=1.6e+02 Score=29.76 Aligned_cols=84 Identities=17% Similarity=0.116 Sum_probs=45.9
Q ss_pred HHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcch---HHHHHHhcCCCCEEEEcceeeecCCCeec
Q 017293 190 LGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADS---AAAALMKDGRVSAVIVGADRVAANGDTAN 266 (374)
Q Consensus 190 ~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Ds---av~~~m~~~~vd~VlvGAd~i~~nG~v~n 266 (374)
..++....+.|. +|++.+ |.+-+.......+...|++++++.-. .+-..+ +++...|++ + ..-|
T Consensus 76 ~~~l~all~~Gd--~Vv~~~--~~y~~t~~~~~~l~~~G~~v~~v~~~d~e~l~~~l-~~~tklV~v-------e-sp~N 142 (397)
T PRK05939 76 AAVFLTLLRAGD--HLVSSQ--FLFGNTNSLFGTLRGLGVEVTMVDATDVQNVAAAI-RPNTRMVFV-------E-TIAN 142 (397)
T ss_pred HHHHHHHcCCCC--EEEECC--CccccHHHHHHHHHhcCCEEEEECCCCHHHHHHhC-CCCCeEEEE-------E-CCCC
Confidence 344544444454 566654 44433221123477789999888522 233333 244444443 1 2344
Q ss_pred ccccH----HHHHHHHhcCCeEEE
Q 017293 267 KIGTY----SLALCAKFHNILFYV 286 (374)
Q Consensus 267 kiGT~----~lA~~Ak~~~vPvyV 286 (374)
..|.. .++-+||.+|++++|
T Consensus 143 ptG~v~dl~~I~~la~~~gi~liv 166 (397)
T PRK05939 143 PGTQVADLAGIGALCRERGLLYVV 166 (397)
T ss_pred CCCCHHhHHHHHHHHHHcCCEEEE
Confidence 45533 466788999998887
No 120
>PRK14364 Maf-like protein; Provisional
Probab=36.56 E-value=2.2e+02 Score=25.66 Aligned_cols=77 Identities=18% Similarity=0.156 Sum_probs=46.1
Q ss_pred CCCeeEEEE---ecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCCCCEEEEcceeeec-CCCeecccccHHHH
Q 017293 199 EGVLERAYC---SETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAA-NGDTANKIGTYSLA 274 (374)
Q Consensus 199 ~g~~~~V~v---~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~vd~VlvGAd~i~~-nG~v~nkiGT~~lA 274 (374)
.|..|.|+. .|+-+..+.-.-.+..|+... +-.+.+ ..-+.+++|||.|+. ||.++.|=.+..-|
T Consensus 15 ~g~~f~v~~~~~dE~~~~~~~p~~~~~~lA~~K----------A~~v~~-~~~~~~vI~aDTvV~~~g~ilgKP~~~eeA 83 (181)
T PRK14364 15 LGLNFEIYSPDIDESVHEGELVHQYVERLAREK----------AQAVLN-IFPDSVIIAADTSLGLDGQIIGKPDSKQHA 83 (181)
T ss_pred CCCCeEEECCCCCCCCCCCCCHHHHHHHHHHHH----------HHHHHH-hCCCCEEEEeCeEEEECCEEecCCCCHHHH
Confidence 378888873 354433332222344454321 111221 234789999999764 88999999998877
Q ss_pred --HHHHhcCCeEEE
Q 017293 275 --LCAKFHNILFYV 286 (374)
Q Consensus 275 --~~Ak~~~vPvyV 286 (374)
++-+..|....|
T Consensus 84 ~~~L~~lsG~~h~V 97 (181)
T PRK14364 84 FDIWKQLSGRWHDV 97 (181)
T ss_pred HHHHHHhCCCCeEE
Confidence 456666665443
No 121
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=36.19 E-value=4.6e+02 Score=26.98 Aligned_cols=83 Identities=20% Similarity=0.288 Sum_probs=48.7
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcch-HhHHHHHhhCCCCeEEEcc----hHHHHHHhcCCCCEEEEcceeeecCCCeec
Q 017293 192 VIRALHSEGVLERAYCSETRPFNQGS-RLTAFELVHDRIPATLIAD----SAAAALMKDGRVSAVIVGADRVAANGDTAN 266 (374)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~eG~-~l~a~~L~~~GI~vtlI~D----sav~~~m~~~~vd~VlvGAd~i~~nG~v~n 266 (374)
+|..+.+.|. +|++ +.|.+.|. +++...+...|+.++++.- ..+...+. ++ +++|+ .+.. | |
T Consensus 92 al~all~~GD--~VI~--~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~~~l~~~I~-~~-Tk~I~-~e~p---g---n 158 (432)
T PRK06702 92 AVLNICSSGD--HLLC--SSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTADEIVALAN-DK-TKLVY-AESL---G---N 158 (432)
T ss_pred HHHHhcCCCC--EEEE--CCCchHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHhCC-cC-CeEEE-EEcC---C---C
Confidence 4444444443 6666 44666543 3334347889999998742 34555552 33 44444 3432 2 3
Q ss_pred cc----ccHHHHHHHHhcCCeEEEe
Q 017293 267 KI----GTYSLALCAKFHNILFYVA 287 (374)
Q Consensus 267 ki----GT~~lA~~Ak~~~vPvyV~ 287 (374)
.. ---.++-+||.+|+|+++=
T Consensus 159 P~~~v~Di~~I~~iA~~~gi~livD 183 (432)
T PRK06702 159 PAMNVLNFKEFSDAAKELEVPFIVD 183 (432)
T ss_pred ccccccCHHHHHHHHHHcCCEEEEE
Confidence 33 3567788999999999873
No 122
>TIGR02429 pcaI_scoA_fam 3-oxoacid CoA-transferase, A subunit. Various members of this family are characterized as the A subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by Pfam model pfam01144. The B subunit represents a different clade in pfam01144, described by TIGR02428. The two are found in general as tandem genes and occasionally as a fusion.
Probab=35.97 E-value=3.3e+02 Score=25.48 Aligned_cols=98 Identities=15% Similarity=0.119 Sum_probs=56.2
Q ss_pred HHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCC-CeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEc
Q 017293 157 GASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEG-VLERAYCSETRPFNQGSRLTAFELVHDRIPATLIA 235 (374)
Q Consensus 157 ~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g-~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~ 235 (374)
+..+|+ ||++|..-++. +++.-..+++...++| ++++++-.-.-....|.. .|...|
T Consensus 12 Av~~I~-----DG~ti~~gGf~------~~~~P~ali~~l~r~~~~~Ltlv~~~~g~~~~g~~----~L~~~G------- 69 (222)
T TIGR02429 12 AVSVIP-----DGATIMIGGFG------TAGQPFELIDALIDTGAKDLTIVSNNAGNGEIGLA----ALLKAG------- 69 (222)
T ss_pred HHhhCC-----CCCEEEECCcC------CccCcHHHHHHHHhcCCCCcEEEecCCCCCCccHH----HHHhCC-------
Confidence 445688 99999876553 2355667777777766 468887643322222322 233333
Q ss_pred chHHHHHHhcCCCCEEEEcc---------eeeecCCCe---ecccccHHHHHHHHhcCCeEEEe
Q 017293 236 DSAAAALMKDGRVSAVIVGA---------DRVAANGDT---ANKIGTYSLALCAKFHNILFYVA 287 (374)
Q Consensus 236 Dsav~~~m~~~~vd~VlvGA---------d~i~~nG~v---~nkiGT~~lA~~Ak~~~vPvyV~ 287 (374)
.+.+++.|- ...+.+|-+ .-.-||..-.+-|-..|+|++..
T Consensus 70 -----------~Vkr~i~s~~~~~~~~~~~~~~~~g~ie~~~~p~g~l~~~lrA~a~G~P~~~t 122 (222)
T TIGR02429 70 -----------QVRKLICSFPRQSDSYVFDELYRAGKIELELVPQGTLAERIRAAGAGLGAFFT 122 (222)
T ss_pred -----------CEeEEEccccCCCCCHHHHHHHHcCCeEEEECCHHHHHHHHHHHHCCCCceee
Confidence 333333320 011123332 23678999999999999998764
No 123
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=35.92 E-value=1.4e+02 Score=28.52 Aligned_cols=36 Identities=19% Similarity=0.064 Sum_probs=23.4
Q ss_pred HHHHhhCCCCeEEEcch-HHHHHHhcCCCCEEEEcce
Q 017293 221 AFELVHDRIPATLIADS-AAAALMKDGRVSAVIVGAD 256 (374)
Q Consensus 221 a~~L~~~GI~vtlI~Ds-av~~~m~~~~vd~VlvGAd 256 (374)
.+.|.+.|++|.+|..+ -....++..++|.|+...+
T Consensus 29 ~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~~~~ 65 (304)
T PRK01372 29 LAALREAGYDAHPIDPGEDIAAQLKELGFDRVFNALH 65 (304)
T ss_pred HHHHHHCCCEEEEEecCcchHHHhccCCCCEEEEecC
Confidence 56788888888888432 3333344467888887654
No 124
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=35.74 E-value=2.1e+02 Score=29.86 Aligned_cols=91 Identities=24% Similarity=0.185 Sum_probs=57.0
Q ss_pred CcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCCC
Q 017293 169 KFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRV 248 (374)
Q Consensus 169 ~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~v 248 (374)
+..|+.++-.. +| +...+..++.| ..|++.+.||..++.. ...+...||++..-.... ... ..+
T Consensus 7 ~~kv~V~GLG~------sG--~a~a~~L~~~G--~~v~v~D~~~~~~~~~--~~~~~~~~i~~~~g~~~~--~~~--~~~ 70 (448)
T COG0771 7 GKKVLVLGLGK------SG--LAAARFLLKLG--AEVTVSDDRPAPEGLA--AQPLLLEGIEVELGSHDD--EDL--AEF 70 (448)
T ss_pred CCEEEEEeccc------cc--HHHHHHHHHCC--CeEEEEcCCCCccchh--hhhhhccCceeecCccch--hcc--ccC
Confidence 45666665431 12 33445556656 6888889999886653 336778888877654433 223 567
Q ss_pred CEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEE
Q 017293 249 SAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFY 285 (374)
Q Consensus 249 d~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvy 285 (374)
|.|++ +=| --.+.++-..|+..|+|++
T Consensus 71 d~vV~------SPG----i~~~~p~v~~A~~~gi~i~ 97 (448)
T COG0771 71 DLVVK------SPG----IPPTHPLVEAAKAAGIEII 97 (448)
T ss_pred CEEEE------CCC----CCCCCHHHHHHHHcCCcEE
Confidence 77743 233 3455667888999999976
No 125
>PLN02828 formyltetrahydrofolate deformylase
Probab=35.68 E-value=1.4e+02 Score=28.92 Aligned_cols=67 Identities=10% Similarity=0.076 Sum_probs=36.3
Q ss_pred ccccHHHHHHHHHHCCC-eeEEEEecCCC-CCcchHhHHHHHhhCCCCeEEEcc-------hHHHHHHhcCCCCEEEEc
Q 017293 185 GYGTALGVIRALHSEGV-LERAYCSETRP-FNQGSRLTAFELVHDRIPATLIAD-------SAAAALMKDGRVSAVIVG 254 (374)
Q Consensus 185 g~~tv~~~l~~a~~~g~-~~~V~v~EsrP-~~eG~~l~a~~L~~~GI~vtlI~D-------sav~~~m~~~~vd~VlvG 254 (374)
|.|+.+.-|..++++|. +..|..+=|.| ...+..+ .....+.|||+.+++. ..+...+ .++|.+++.
T Consensus 79 g~g~nl~~ll~~~~~g~l~~eI~~ViSn~~~~~~a~~-~~~A~~~gIP~~~~~~~~~~~~e~~~~~~l--~~~DliVLA 154 (268)
T PLN02828 79 KQDHCLIDLLHRWQDGRLPVDITCVISNHERGPNTHV-MRFLERHGIPYHYLPTTKENKREDEILELV--KGTDFLVLA 154 (268)
T ss_pred CCChhHHHHHHhhhcCCCCceEEEEEeCCCCCCCchH-HHHHHHcCCCEEEeCCCCCCCHHHHHHHHH--hcCCEEEEe
Confidence 45666665555666664 33433333332 2122222 2234577999998764 2444556 468888765
No 126
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=35.14 E-value=2.8e+02 Score=26.52 Aligned_cols=89 Identities=15% Similarity=0.065 Sum_probs=53.4
Q ss_pred cEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchH--hHHHHHhhCCCCeEEEcchHHHHHHhcCC
Q 017293 170 FSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSR--LTAFELVHDRIPATLIADSAAAALMKDGR 247 (374)
Q Consensus 170 ~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~--l~a~~L~~~GI~vtlI~Dsav~~~m~~~~ 247 (374)
-+++|+++.++ .....|+.|...|-.--|.+.+ + .+.|.. -||+-|+ ..+++..
T Consensus 57 Vtvvs~Gp~~a-------~~~~~lr~aLAmGaD~avli~d-~-~~~g~D~~~tA~~La---------------~ai~~~~ 112 (256)
T PRK03359 57 VTALSVGGKAL-------TNAKGRKDVLSRGPDELIVVID-D-QFEQALPQQTASALA---------------AAAQKAG 112 (256)
T ss_pred EEEEEECCcch-------hhHHHHHHHHHcCCCEEEEEec-C-cccCcCHHHHHHHHH---------------HHHHHhC
Confidence 67788887521 1235789998888765555543 3 222322 2444333 3444456
Q ss_pred CCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEecc
Q 017293 248 VSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAP 289 (374)
Q Consensus 248 vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~ 289 (374)
+|.||.|-.++-.+.+ -+ =+++|...|.|++-.+.
T Consensus 113 ~DLVl~G~~s~D~~tg---qv----g~~lAe~Lg~P~vt~v~ 147 (256)
T PRK03359 113 FDLILCGDGSSDLYAQ---QV----GLLVGEILNIPAINGVS 147 (256)
T ss_pred CCEEEEcCccccCCCC---cH----HHHHHHHhCCCceeeEE
Confidence 9999999876633221 11 24789999999885443
No 127
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=34.92 E-value=68 Score=33.62 Aligned_cols=79 Identities=13% Similarity=0.095 Sum_probs=40.3
Q ss_pred EEEEecCCCcccccccccHHHHH-HHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCCCC
Q 017293 171 SVLTHCNTGSLATAGYGTALGVI-RALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVS 249 (374)
Q Consensus 171 ~ILT~~~sg~lat~g~~tv~~~l-~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~vd 249 (374)
.||..+.+ --...| ..+++..+..+||++-+.+ +-|...++......-+..-......+..+.++.++|
T Consensus 2 kVLviG~G---------grehal~~~l~~s~~g~~v~~~~g~~-Npg~~~~~~~~~~~~~~~~~~d~~~l~~~a~~~~id 71 (486)
T PRK05784 2 KVLLVGDG---------AREHALAEALEKSTKGYKVYALSSYL-NPGINSVVKATGGEYFIGNINSPEEVKKVAKEVNPD 71 (486)
T ss_pred EEEEECCc---------hhHHHHHHHHHhCCCCCEEEEEECCC-ChhheeecccccCceEecCCCCHHHHHHHHHHhCCC
Confidence 47777653 223334 4455554467899885533 334322221111110111111123455556678899
Q ss_pred EEEEcceeee
Q 017293 250 AVIVGADRVA 259 (374)
Q Consensus 250 ~VlvGAd~i~ 259 (374)
.|++|.+.-+
T Consensus 72 ~Vi~g~E~~l 81 (486)
T PRK05784 72 LVVIGPEEPL 81 (486)
T ss_pred EEEECCchHH
Confidence 9999987644
No 128
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=34.91 E-value=4.2e+02 Score=25.49 Aligned_cols=42 Identities=26% Similarity=0.198 Sum_probs=28.6
Q ss_pred CCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccC-ccccCC
Q 017293 246 GRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPL-TSIDLT 296 (374)
Q Consensus 246 ~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~-~K~~~~ 296 (374)
.+.|.||...|.+. .| ..+.-.|+.+++||+.+... -|+||.
T Consensus 120 ~~~D~VIdaiD~~~------~k---~~L~~~c~~~~ip~I~~gGag~k~dp~ 162 (268)
T PRK15116 120 AGFSYVIDAIDSVR------PK---AALIAYCRRNKIPLVTTGGAGGQIDPT 162 (268)
T ss_pred CCCCEEEEcCCCHH------HH---HHHHHHHHHcCCCEEEECCcccCCCCC
Confidence 46888877766542 22 34666789999999987655 456654
No 129
>PRK15029 arginine decarboxylase; Provisional
Probab=34.87 E-value=1.4e+02 Score=33.10 Aligned_cols=86 Identities=6% Similarity=0.021 Sum_probs=53.4
Q ss_pred EEEEecCCCCC------cchHhHHHHHhhCCCCeEEEcchHHHHHHh-c-CCCCEEEEcceeeecCCCeecccccHHHHH
Q 017293 204 RAYCSETRPFN------QGSRLTAFELVHDRIPATLIADSAAAALMK-D-GRVSAVIVGADRVAANGDTANKIGTYSLAL 275 (374)
Q Consensus 204 ~V~v~EsrP~~------eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~-~-~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~ 275 (374)
+|.++|..+.. +-.+.....|.+.|..|....+..-+.-+- + ..+|.||+ |.-+++++-.. .|.-.+--
T Consensus 2 kILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~~~~DlVLL--D~~LPd~dG~~-~~~ell~~ 78 (755)
T PRK15029 2 KVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMF--SYQMEHPDEHQ-NVRQLIGK 78 (755)
T ss_pred eEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCcEEEE--ECCCCCCccch-hHHHHHHH
Confidence 46777776642 223344678999999999998765544433 3 47999998 55677665222 11122222
Q ss_pred HHH-hcCCeEEEeccCcc
Q 017293 276 CAK-FHNILFYVAAPLTS 292 (374)
Q Consensus 276 ~Ak-~~~vPvyV~a~~~K 292 (374)
+-+ ..++|+++++...+
T Consensus 79 IR~~~~~iPIIlLTar~~ 96 (755)
T PRK15029 79 LHERQQNVPVFLLGDREK 96 (755)
T ss_pred HHhhCCCCCEEEEEcCCc
Confidence 322 35899999986654
No 130
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=34.77 E-value=3.7e+02 Score=24.76 Aligned_cols=58 Identities=16% Similarity=0.066 Sum_probs=37.5
Q ss_pred HHHHHhhCC--CCeEEEcc----hHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEec
Q 017293 220 TAFELVHDR--IPATLIAD----SAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAA 288 (374)
Q Consensus 220 ~a~~L~~~G--I~vtlI~D----sav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a 288 (374)
+++.|.+.+ ++++.++. .....++ .++|.||...|... .-..+.-.|+.+++|++.+.
T Consensus 80 ~~~~l~~~np~~~i~~~~~~i~~~~~~~~~--~~~DvVi~~~d~~~---------~r~~l~~~~~~~~ip~i~~g 143 (228)
T cd00757 80 AAERLRAINPDVEIEAYNERLDAENAEELI--AGYDLVLDCTDNFA---------TRYLINDACVKLGKPLVSGA 143 (228)
T ss_pred HHHHHHHhCCCCEEEEecceeCHHHHHHHH--hCCCEEEEcCCCHH---------HHHHHHHHHHHcCCCEEEEE
Confidence 344565543 55555542 2334567 78999988877652 12567778999999998764
No 131
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=34.68 E-value=5.2e+02 Score=26.43 Aligned_cols=103 Identities=19% Similarity=0.160 Sum_probs=57.5
Q ss_pred CCcEEEEecCCCcccccccccHHHHHH---HHHH-CCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHH---
Q 017293 168 SKFSVLTHCNTGSLATAGYGTALGVIR---ALHS-EGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA--- 240 (374)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~tv~~~l~---~a~~-~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~--- 240 (374)
..+.|.|-|-+.+ ..+ .|+ .++. +++.-|+|++... .....-+++.|...|.+|||++-..=|
T Consensus 61 ~~eIiFTSG~TEs-------nNl-aI~g~~~a~~~~~~~~HIIts~iE--H~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~ 130 (386)
T COG1104 61 PEEIIFTSGATES-------NNL-AIKGAALAYRNAQKGKHIITSAIE--HPAVLNTCRYLERQGFEVTYLPVDSNGLVD 130 (386)
T ss_pred CCeEEEecCCcHH-------HHH-HHHhhHHhhhcccCCCeEEEcccc--cHHHHHHHHHHHhcCCeEEEeCCCCCCeEc
Confidence 3478888764432 112 222 3332 2345577765432 222222466787889999999854321
Q ss_pred --HHHhcCCCCEEEEcceeeecCCCeecccccHH----HHHHHHhcCCeEEE
Q 017293 241 --ALMKDGRVSAVIVGADRVAANGDTANKIGTYS----LALCAKFHNILFYV 286 (374)
Q Consensus 241 --~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~----lA~~Ak~~~vPvyV 286 (374)
.+.+.-+-|.++|.- . .+=|-+||.+ ++-+||.++++|.|
T Consensus 131 ~e~L~~al~~~T~LVSi--m----~aNnE~G~IQpI~ei~~i~k~~~i~fHv 176 (386)
T COG1104 131 LEQLEEALRPDTILVSI--M----HANNETGTIQPIAEIGEICKERGILFHV 176 (386)
T ss_pred HHHHHHhcCCCceEEEE--E----ecccCeeecccHHHHHHHHHHcCCeEEE
Confidence 111111334444322 2 2346888864 78899999999997
No 132
>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=34.67 E-value=2.3e+02 Score=28.58 Aligned_cols=104 Identities=15% Similarity=0.070 Sum_probs=58.4
Q ss_pred ccccH-HHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEE-cc----hHHHHHHhcCCCCEEEEcc---
Q 017293 185 GYGTA-LGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLI-AD----SAAAALMKDGRVSAVIVGA--- 255 (374)
Q Consensus 185 g~~tv-~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI-~D----sav~~~m~~~~vd~VlvGA--- 255 (374)
|.|-+ .+++....+.+...++.+.+-.|...--+ +.+.....-.++++ .| ..+.... ..+..|...|
T Consensus 12 G~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~--~e~~~~~~~~v~~~~~D~~~~~~i~~a~--~~~~Vvh~aa~~~ 87 (361)
T KOG1430|consen 12 GSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLP--AELTGFRSGRVTVILGDLLDANSISNAF--QGAVVVHCAASPV 87 (361)
T ss_pred CccHHHHHHHHHHHhcccccEEEEeccCccccccc--hhhhcccCCceeEEecchhhhhhhhhhc--cCceEEEeccccC
Confidence 33443 56777777777788999999888742111 11111123344554 22 2222222 3332222222
Q ss_pred eeeecCC----CeecccccHHHHHHHHhcCCeEEEeccCcc
Q 017293 256 DRVAANG----DTANKIGTYSLALCAKFHNILFYVAAPLTS 292 (374)
Q Consensus 256 d~i~~nG----~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~K 292 (374)
+.+..|+ .-+|--||..+--.|+..|||..|-+.+.-
T Consensus 88 ~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~~lIYtSs~~ 128 (361)
T KOG1430|consen 88 PDFVENDRDLAMRVNVNGTLNVIEACKELGVKRLIYTSSAY 128 (361)
T ss_pred ccccccchhhheeecchhHHHHHHHHHHhCCCEEEEecCce
Confidence 2222211 136889999999999999999998766554
No 133
>PRK13566 anthranilate synthase; Provisional
Probab=34.42 E-value=1.6e+02 Score=32.60 Aligned_cols=81 Identities=11% Similarity=0.030 Sum_probs=50.4
Q ss_pred CCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCCCCEEEE-cceeeecCCCeecccccHHHHHHHH
Q 017293 200 GVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIV-GADRVAANGDTANKIGTYSLALCAK 278 (374)
Q Consensus 200 g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~vd~Vlv-GAd~i~~nG~v~nkiGT~~lA~~Ak 278 (374)
|+..+|.+.+-...+-+ ..++.|.+.|++|+++........+...++|.||+ |-- | ..+..+...+--.|.
T Consensus 524 ~~g~~IlvID~~dsf~~--~l~~~Lr~~G~~v~vv~~~~~~~~~~~~~~DgVVLsgGp-----g-sp~d~~~~~lI~~a~ 595 (720)
T PRK13566 524 GEGKRVLLVDHEDSFVH--TLANYFRQTGAEVTTVRYGFAEEMLDRVNPDLVVLSPGP-----G-RPSDFDCKATIDAAL 595 (720)
T ss_pred CCCCEEEEEECCCchHH--HHHHHHHHCCCEEEEEECCCChhHhhhcCCCEEEECCCC-----C-ChhhCCcHHHHHHHH
Confidence 34556777776544423 34778999999999998765444443356788765 211 1 123344555555566
Q ss_pred hcCCeEEEec
Q 017293 279 FHNILFYVAA 288 (374)
Q Consensus 279 ~~~vPvyV~a 288 (374)
..++|++-+|
T Consensus 596 ~~~iPILGIC 605 (720)
T PRK13566 596 ARNLPIFGVC 605 (720)
T ss_pred HCCCcEEEEe
Confidence 7899999766
No 134
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=34.26 E-value=3e+02 Score=28.29 Aligned_cols=119 Identities=19% Similarity=0.188 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHH-HHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhC
Q 017293 149 TNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGV-IRALHSEGVLERAYCSETRPFNQGSRLTAFELVHD 227 (374)
Q Consensus 149 a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~tv~~~-l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~ 227 (374)
+++.++++..+-+...+. .+|++||-+-+ -++.+ |....+-|-+ |+=-||.+-=.. + .-.-.
T Consensus 108 AR~AVAeYl~~~l~~kl~-a~DV~ltsGC~---------qAIe~~i~~LA~p~aN----ILlPrPGfp~Y~--~-~a~~~ 170 (447)
T KOG0259|consen 108 ARRAVAEYLNRDLPNKLT-ADDVVLTSGCS---------QAIELAISSLANPGAN----ILLPRPGFPLYD--T-RAIYS 170 (447)
T ss_pred HHHHHHHHhhcCCCCccC-cCceEEeccch---------HHHHHHHHHhcCCCCc----eecCCCCCchHH--H-hhhhc
Confidence 455555553322221111 56899997532 34443 4444443433 445688763211 1 12234
Q ss_pred CCCeEEE----------cchHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEE
Q 017293 228 RIPATLI----------ADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYV 286 (374)
Q Consensus 228 GI~vtlI----------~Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV 286 (374)
|++|.+. --..+-++.-+..+-.||+--.. ++|+|+.+-=--.+|-.|+.+++||+.
T Consensus 171 ~lEVR~ydlLPe~~weIDL~~veal~DENT~AivviNP~N--PcGnVys~~HL~kiae~A~klgi~vIa 237 (447)
T KOG0259|consen 171 GLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVVINPNN--PCGNVYSEDHLKKIAETAKKLGIMVIA 237 (447)
T ss_pred CceeEeecccCcccceechHHHHHhhccCeeEEEEeCCCC--CCcccccHHHHHHHHHHHHHhCCeEEe
Confidence 6666542 23455556533334444444432 568888888888999999999999874
No 135
>PRK05967 cystathionine beta-lyase; Provisional
Probab=33.94 E-value=1.9e+02 Score=29.46 Aligned_cols=82 Identities=16% Similarity=0.084 Sum_probs=47.1
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcchHh-HHHHHhhCCCCeEEEcc---hHHHHHHhcCCCCEEEEcceeeecCCCeecc
Q 017293 192 VIRALHSEGVLERAYCSETRPFNQGSRL-TAFELVHDRIPATLIAD---SAAAALMKDGRVSAVIVGADRVAANGDTANK 267 (374)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~eG~~l-~a~~L~~~GI~vtlI~D---sav~~~m~~~~vd~VlvGAd~i~~nG~v~nk 267 (374)
++....+.|. +|++. .|.+.|.+. ....+...|++++++.. ..+...++ ++...|++-. .-|.
T Consensus 95 ~l~all~~GD--~Vlv~--~~~Y~~~~~l~~~~l~~~Gi~v~~vd~~~~e~l~~al~-~~TklV~les--------PsNP 161 (395)
T PRK05967 95 PFLGFLSPGD--HALIV--DSVYYPTRHFCDTMLKRLGVEVEYYDPEIGAGIAKLMR-PNTKVVHTEA--------PGSN 161 (395)
T ss_pred HHHHhcCCCC--EEEEc--cCCcHHHHHHHHHHHHhcCeEEEEeCCCCHHHHHHhcC-cCceEEEEEC--------CCCC
Confidence 4444455454 56665 566766443 22346788999999853 33444442 3444443322 1233
Q ss_pred ccc----HHHHHHHHhcCCeEEE
Q 017293 268 IGT----YSLALCAKFHNILFYV 286 (374)
Q Consensus 268 iGT----~~lA~~Ak~~~vPvyV 286 (374)
.|+ ..++-+||++|++++|
T Consensus 162 ~l~v~dl~~I~~la~~~g~~vvV 184 (395)
T PRK05967 162 TFEMQDIPAIAEAAHRHGAIVMM 184 (395)
T ss_pred CCcHHHHHHHHHHHHHhCCEEEE
Confidence 443 4567788999988876
No 136
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=33.58 E-value=32 Score=26.48 Aligned_cols=33 Identities=27% Similarity=0.276 Sum_probs=24.2
Q ss_pred CCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEecc
Q 017293 246 GRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAP 289 (374)
Q Consensus 246 ~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~ 289 (374)
.++--+ |++.|+. |.-.|++|+++|||.++-++
T Consensus 29 ~~~~Gi------v~~~Gg~-----~SH~aIlAr~~giP~ivg~~ 61 (80)
T PF00391_consen 29 QRVAGI------VTEEGGP-----TSHAAILARELGIPAIVGVG 61 (80)
T ss_dssp TTSSEE------EESSSST-----TSHHHHHHHHTT-EEEESTT
T ss_pred hheEEE------EEEcCCc-----cchHHHHHHHcCCCEEEeec
Confidence 666666 5566654 35678999999999999875
No 137
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=33.48 E-value=1.2e+02 Score=26.62 Aligned_cols=60 Identities=15% Similarity=0.208 Sum_probs=35.5
Q ss_pred HHHHhhCCCCeEEEcchHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccC
Q 017293 221 AFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPL 290 (374)
Q Consensus 221 a~~L~~~GI~vtlI~Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~ 290 (374)
+..|...|+++..+.|... ..+ .+=|.||+ +...|. ..-+..++-.||.+|+|++.++..
T Consensus 52 ~~~l~~~g~~~~~~~~~~~-~~~--~~~D~vI~----iS~sG~---t~~~i~~~~~ak~~g~~iI~IT~~ 111 (179)
T cd05005 52 AMRLMHLGLNVYVVGETTT-PAI--GPGDLLIA----ISGSGE---TSSVVNAAEKAKKAGAKVVLITSN 111 (179)
T ss_pred HHHHHhCCCeEEEeCCCCC-CCC--CCCCEEEE----EcCCCC---cHHHHHHHHHHHHCCCeEEEEECC
Confidence 3445566777777666421 123 44455543 334453 223456677899999999998764
No 138
>PRK12320 hypothetical protein; Provisional
Probab=33.48 E-value=89 Score=34.39 Aligned_cols=53 Identities=17% Similarity=0.071 Sum_probs=36.6
Q ss_pred chHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccC
Q 017293 236 DSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPL 290 (374)
Q Consensus 236 Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~ 290 (374)
|.....++ .++|.|+--|-....+..-.|-.||..++-+|+.+|+.++.+...
T Consensus 51 d~~l~~al--~~~D~VIHLAa~~~~~~~~vNv~Gt~nLleAA~~~GvRiV~~SS~ 103 (699)
T PRK12320 51 NPVLQELA--GEADAVIHLAPVDTSAPGGVGITGLAHVANAAARAGARLLFVSQA 103 (699)
T ss_pred CHHHHHHh--cCCCEEEEcCccCccchhhHHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 44445556 678888877643221222368899999999999999997776544
No 139
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=33.40 E-value=2.6e+02 Score=28.31 Aligned_cols=60 Identities=17% Similarity=0.147 Sum_probs=31.9
Q ss_pred HHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCCCCEEEEcce
Q 017293 190 LGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGAD 256 (374)
Q Consensus 190 ~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~vd~VlvGAd 256 (374)
+..-+.+.+.|.. |.+.+..+...-.+. ..+|.+.|+.+ +........+ +.+|.|++++.
T Consensus 18 ~~~A~~l~~~G~~--V~~~d~~~~~~~~~~-~~~l~~~~~~~--~~~~~~~~~~--~~~d~vv~~~g 77 (450)
T PRK14106 18 LALAKFLKKLGAK--VILTDEKEEDQLKEA-LEELGELGIEL--VLGEYPEEFL--EGVDLVVVSPG 77 (450)
T ss_pred HHHHHHHHHCCCE--EEEEeCCchHHHHHH-HHHHHhcCCEE--EeCCcchhHh--hcCCEEEECCC
Confidence 3444566667764 555555432211111 34677778763 3222222445 78999988764
No 140
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=33.25 E-value=1.9e+02 Score=23.16 Aligned_cols=73 Identities=21% Similarity=0.151 Sum_probs=43.8
Q ss_pred chHhHHHHHhhCCCCeEEEcc----hHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhc--CCeEEEecc
Q 017293 216 GSRLTAFELVHDRIPATLIAD----SAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFH--NILFYVAAP 289 (374)
Q Consensus 216 G~~l~a~~L~~~GI~vtlI~D----sav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~--~vPvyV~a~ 289 (374)
|....+..|.+.|.+|.++-- ..+-..+++.+.|.|.+.+- ..-+.-....++-.+|.. ++|+++-.+
T Consensus 16 Gl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~------~~~~~~~~~~l~~~~k~~~p~~~iv~GG~ 89 (121)
T PF02310_consen 16 GLLYLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGISVS------MTPNLPEAKRLARAIKERNPNIPIVVGGP 89 (121)
T ss_dssp HHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEES------SSTHHHHHHHHHHHHHTTCTTSEEEEEES
T ss_pred HHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEcc------CcCcHHHHHHHHHHHHhcCCCCEEEEECC
Confidence 666666678888888887711 12233344578998877442 122333445556556665 678887766
Q ss_pred Ccccc
Q 017293 290 LTSID 294 (374)
Q Consensus 290 ~~K~~ 294 (374)
..++.
T Consensus 90 ~~t~~ 94 (121)
T PF02310_consen 90 HATAD 94 (121)
T ss_dssp SSGHH
T ss_pred chhcC
Confidence 55554
No 141
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=32.86 E-value=65 Score=26.25 Aligned_cols=68 Identities=16% Similarity=0.105 Sum_probs=35.4
Q ss_pred EEEEecCCCcccccccccH-H-HHHHHHHHCCCeeEEEEe-cC----C-CC----CcchHh------HHHHHhhCCCCeE
Q 017293 171 SVLTHCNTGSLATAGYGTA-L-GVIRALHSEGVLERAYCS-ET----R-PF----NQGSRL------TAFELVHDRIPAT 232 (374)
Q Consensus 171 ~ILT~~~sg~lat~g~~tv-~-~~l~~a~~~g~~~~V~v~-Es----r-P~----~eG~~l------~a~~L~~~GI~vt 232 (374)
.||..|.+| +| |++ . .+-+.|.++|....+... ++ . .. .-|-+. ..+.+...||||.
T Consensus 2 ~Ill~C~~G--aS---Ss~la~km~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill~PQv~~~~~~i~~~~~~~~ipv~ 76 (99)
T cd05565 2 NVLVLCAGG--GT---SGLLANALNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVILAPQMASYYDELKKDTDRLGIKLV 76 (99)
T ss_pred EEEEECCCC--CC---HHHHHHHHHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEEcChHHHHHHHHHHHhhhcCCCEE
Confidence 488899776 33 343 2 344566777776665533 11 0 00 001111 1223446789998
Q ss_pred EEcchHHHHHH
Q 017293 233 LIADSAAAALM 243 (374)
Q Consensus 233 lI~Dsav~~~m 243 (374)
+|+-..-++.|
T Consensus 77 ~I~~~~Yg~~~ 87 (99)
T cd05565 77 TTTGKQYIELT 87 (99)
T ss_pred EeCHHHHhHHh
Confidence 88765545445
No 142
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=31.77 E-value=4.5e+02 Score=26.86 Aligned_cols=85 Identities=25% Similarity=0.318 Sum_probs=45.6
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcchH-hHHHHHhhCCCCeEEEc--c-hHHHHHHhcCCCCEEEEcceee-ecCCCeec
Q 017293 192 VIRALHSEGVLERAYCSETRPFNQGSR-LTAFELVHDRIPATLIA--D-SAAAALMKDGRVSAVIVGADRV-AANGDTAN 266 (374)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~eG~~-l~a~~L~~~GI~vtlI~--D-sav~~~m~~~~vd~VlvGAd~i-~~nG~v~n 266 (374)
++....+.|. +|++.+ |.+.|.. +....+...|+++.++. | ..+-..+. ++...|++ +.+ -+.|.+..
T Consensus 89 al~al~~~Gd--~Vl~~~--~~Y~~t~~~~~~~l~~~gi~v~~~d~~d~e~le~ai~-~~tklV~l--esp~NPtG~v~d 161 (425)
T PRK06084 89 AIQTIAEAGD--NIVSVA--KLYGGTYNLLAHTLPRIGIETRFAAHDDIAALEALID-ERTKAVFC--ESIGNPAGNIID 161 (425)
T ss_pred HHHHHhCCCC--EEEEeC--CCcchHHHHHHHhcccceeEEEEECCCCHHHHHHHhc-cCCcEEEE--eCCCCCCCeecC
Confidence 4444444454 455543 4444322 22333445688888774 2 23344442 45666655 233 23444443
Q ss_pred ccccHHHHHHHHhcCCeEEE
Q 017293 267 KIGTYSLALCAKFHNILFYV 286 (374)
Q Consensus 267 kiGT~~lA~~Ak~~~vPvyV 286 (374)
-..++-+|+.++++++|
T Consensus 162 ---l~~I~~la~~~~i~vVv 178 (425)
T PRK06084 162 ---IQALADAAHRHGVPLIV 178 (425)
T ss_pred ---HHHHHHHHHHcCCEEEE
Confidence 26677789999998876
No 143
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=31.67 E-value=1.5e+02 Score=29.24 Aligned_cols=119 Identities=13% Similarity=0.092 Sum_probs=67.2
Q ss_pred EEEEecCCCcccccc-------cccHHHHHHHHHHCCCeeEEEEecCCCCCc--chHhHHHH---HhhCCCCeEEEcchH
Q 017293 171 SVLTHCNTGSLATAG-------YGTALGVIRALHSEGVLERAYCSETRPFNQ--GSRLTAFE---LVHDRIPATLIADSA 238 (374)
Q Consensus 171 ~ILT~~~sg~lat~g-------~~tv~~~l~~a~~~g~~~~V~v~EsrP~~e--G~~l~a~~---L~~~GI~vtlI~Dsa 238 (374)
+|-..-..|++...+ +....+.|+.+....+.--|.+.=..|... +....+++ |++.| ||+++....
T Consensus 60 ~Iavi~~~G~I~~~~~~~~~~~~~~~~~~l~~~~~~~~vk~vvL~inSPGG~v~as~~i~~~l~~l~~~~-PV~v~v~~~ 138 (317)
T COG0616 60 VIAVIHVEGAIVAGGGPLRFIGGDDIEEILRAARADPSVKAVVLRINSPGGSVVASELIARALKRLRAKK-PVVVSVGGY 138 (317)
T ss_pred EEEEEEeeeeeecCCCccccccHHHHHHHHHHHhcCCCCceEEEEEECcCCchhHHHHHHHHHHHHhhcC-CEEEEECCe
Confidence 454444457776555 556777888887755444444444557765 33333444 55677 999888754
Q ss_pred H---HHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEe-ccCccc
Q 017293 239 A---AALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA-APLTSI 293 (374)
Q Consensus 239 v---~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~-a~~~K~ 293 (374)
+ ||+|+ --.|+++..-.+++ |++=--.+...+.-+.+.+||-+.+. +..||-
T Consensus 139 AASGGY~IA-~aAd~I~a~p~si~--GSIGVi~~~~~~~~l~~k~Gv~~~~~~ag~~k~ 194 (317)
T COG0616 139 AASGGYYIA-LAADKIVADPSSIT--GSIGVISGAPNFEELLEKLGVEKEVITAGEYKD 194 (317)
T ss_pred ecchhhhhh-ccCCEEEecCCcee--eeceeEEecCCHHHHHHhcCCceeeeecccccc
Confidence 4 56662 34444444444444 33222223455666778888876643 344453
No 144
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=31.58 E-value=2.3e+02 Score=24.40 Aligned_cols=61 Identities=21% Similarity=0.109 Sum_probs=36.2
Q ss_pred cHHHHHHHHHHC-----CCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcch--HHHHHHhcCCCCEEEEc
Q 017293 188 TALGVIRALHSE-----GVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADS--AAAALMKDGRVSAVIVG 254 (374)
Q Consensus 188 tv~~~l~~a~~~-----g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Ds--av~~~m~~~~vd~VlvG 254 (374)
|..+++...+.. |+++.|+ +|-..-|..| +..|.+.|..++...-. .+...+ ++.|.|+..
T Consensus 11 t~~a~~~ll~~~~~~~~gk~v~Vv---Grs~~vG~pl-a~lL~~~gatV~~~~~~t~~l~~~v--~~ADIVvsA 78 (140)
T cd05212 11 VAKAVKELLNKEGVRLDGKKVLVV---GRSGIVGAPL-QCLLQRDGATVYSCDWKTIQLQSKV--HDADVVVVG 78 (140)
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEE---CCCchHHHHH-HHHHHHCCCEEEEeCCCCcCHHHHH--hhCCEEEEe
Confidence 555555544432 4444333 3434447766 66788899888888611 134456 788888654
No 145
>PRK06460 hypothetical protein; Provisional
Probab=31.53 E-value=2.8e+02 Score=27.67 Aligned_cols=58 Identities=14% Similarity=0.078 Sum_probs=32.3
Q ss_pred HHhhCCCCeEEEcc---hHHHHHHhcCCCCEEEEcceeee-cCCCeecccccHHHHHHHHhcCCeEEE
Q 017293 223 ELVHDRIPATLIAD---SAAAALMKDGRVSAVIVGADRVA-ANGDTANKIGTYSLALCAKFHNILFYV 286 (374)
Q Consensus 223 ~L~~~GI~vtlI~D---sav~~~m~~~~vd~VlvGAd~i~-~nG~v~nkiGT~~lA~~Ak~~~vPvyV 286 (374)
.+...|+++..++- .....+ .+++...|++ +... +.|.+... -.++-+|+.+|++++|
T Consensus 104 ~~~~~G~~v~~~~~~~~~~l~~~-~~~~tklV~l--~sp~NPtG~v~d~---~~I~~la~~~g~~viv 165 (376)
T PRK06460 104 YLKNWGVNVDASNPGSDNIIEKA-KSKRYDVVFV--ENITNPLLRVVDI---TELSKVCKENGSILIV 165 (376)
T ss_pred HHHhhCcEEEEECCCCHHHHHHh-cCCCceEEEE--ECCCCCCCcccCH---HHHHHHHHHcCCEEEE
Confidence 35667888777742 122222 2345666665 2232 24544443 2467788999988765
No 146
>PF08032 SpoU_sub_bind: RNA 2'-O ribose methyltransferase substrate binding; InterPro: IPR013123 Most cellular RNAs undergo a number of post-transcriptional nucleoside modifications. While the biological role of many of these modifications is unknown, some have been shown to be necessary for cell growth or for resistance to antibiotics [, ]. One of the most common modifications is 2'O-ribose methylation catalysed by the RNA 2'O-ribose methyltransferases, a large enzyme family that transfer a methyl group from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of the backbone ribose []. This entry represents a substrate-binding domain found in a variety of bacterial and mitochondrial RNA 2'-O ribose methyltransferases. These include the bacterial enzyme RlmB, which specifically methylates the conserved nucleotide guanosine 2251 in 23S RNA, and PET56, which specifically methylates the equivalent guanosine in mitochondrial 21S RNA [, ]. This domain forms a four-stranded mixed beta sheet similar to that found in other RNA binding enzymes []. It shows considerable conformational flexibility which is thought to be important for its ability to bind RNA.; GO: 0008168 methyltransferase activity; PDB: 1GZ0_D 1IPA_A.
Probab=31.47 E-value=1.5e+02 Score=21.92 Aligned_cols=51 Identities=10% Similarity=0.154 Sum_probs=30.7
Q ss_pred HHHHHHHHCCC-eeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHH
Q 017293 191 GVIRALHSEGV-LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAAL 242 (374)
Q Consensus 191 ~~l~~a~~~g~-~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~ 242 (374)
+.+..|.+++. -.+||+.|..-...-..+ ...+.+.|+++..+++.-+..+
T Consensus 6 ~~V~eaL~~~~~i~~l~~~~~~~~~~~~~i-~~~~~~~~i~v~~v~~~~l~~l 57 (76)
T PF08032_consen 6 HAVEEALKSGPRIKKLFVTEEKADKRIKEI-LKLAKKKGIPVYEVSKKVLDKL 57 (76)
T ss_dssp HHHHHHHHCTGGEEEEEEETT---CCTHHH-HHHHHHCT-EEEEE-HHHHHHC
T ss_pred HHHHHHHcCCCCccEEEEEcCccchhHHHH-HHHHHHcCCeEEEeCHHHHHHH
Confidence 34556666554 577899998322222334 3467788999999998776654
No 147
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=31.25 E-value=4.7e+02 Score=24.92 Aligned_cols=85 Identities=14% Similarity=0.137 Sum_probs=42.2
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcc---hHHHHHHhcC---CCCEEEEcceeee-cCCCe
Q 017293 192 VIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIAD---SAAAALMKDG---RVSAVIVGADRVA-ANGDT 264 (374)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~D---sav~~~m~~~---~vd~VlvGAd~i~-~nG~v 264 (374)
.++.+.+.|. +|++ ++|.+..... .+...|.++..++. ..+-.++++. .-.++++ ...+. ..| .
T Consensus 77 ~~~~~~~~gd--~Vl~--~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~~~~v~-~~~~~~~tG-~ 147 (349)
T cd06454 77 VLSTLAGKGD--LIIS--DSLNHASIID---GIRLSGAKKRIFKHNDMEDLEKLLREARRPYGKKLIV-TEGVYSMDG-D 147 (349)
T ss_pred HHHHhcCCCC--EEEE--ehhhhHHHHH---HHHHcCCceEEecCCCHHHHHHHHHHhhccCCCeEEE-EeccccCCC-C
Confidence 3444443343 4554 3455433221 24456888776633 2334444321 2223333 22232 234 4
Q ss_pred ecccccHHHHHHHHhcCCeEEEe
Q 017293 265 ANKIGTYSLALCAKFHNILFYVA 287 (374)
Q Consensus 265 ~nkiGT~~lA~~Ak~~~vPvyV~ 287 (374)
...+ -.++-+|++|++++++=
T Consensus 148 ~~~~--~~i~~~~~~~~~~livD 168 (349)
T cd06454 148 IAPL--PELVDLAKKYGAILFVD 168 (349)
T ss_pred ccCH--HHHHHHHHHcCCEEEEE
Confidence 4443 45778899999998873
No 148
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=31.08 E-value=1e+02 Score=30.98 Aligned_cols=95 Identities=14% Similarity=0.077 Sum_probs=65.2
Q ss_pred cccHHHHHHHHHHCCCeeEEEEecCCCCCcchHh---HHHHHhh-C-CCCeEEEcchHH--HHHHhcCCCCEEEEcceee
Q 017293 186 YGTALGVIRALHSEGVLERAYCSETRPFNQGSRL---TAFELVH-D-RIPATLIADSAA--AALMKDGRVSAVIVGADRV 258 (374)
Q Consensus 186 ~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l---~a~~L~~-~-GI~vtlI~Dsav--~~~m~~~~vd~VlvGAd~i 258 (374)
+-++.++++.|.+.+..+-+=+.++.=.+-|... +.+.+++ . .|||.+-.|.+- -.++ .-+ =.|-.+|
T Consensus 26 ~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~~~~~ae~~~~VPValHLDHg~~~e~i~--~Ai---~~GFtSV 100 (347)
T TIGR01521 26 MEQMRAIMEAADKTDSPVILQASRGARSYAGAPFLRHLILAAIEEYPHIPVVMHQDHGNSPATCQ--RAI---QLGFTSV 100 (347)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHH--HHH---HcCCCEE
Confidence 4678889999988776654444443222234332 2333443 4 399999999873 3344 233 3488999
Q ss_pred ecCCCee-----------cccccHHHHHHHHhcCCeEE
Q 017293 259 AANGDTA-----------NKIGTYSLALCAKFHNILFY 285 (374)
Q Consensus 259 ~~nG~v~-----------nkiGT~~lA~~Ak~~~vPvy 285 (374)
+-||+-. |--=|-.++-.||.+|++|=
T Consensus 101 MiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~GvsVE 138 (347)
T TIGR01521 101 MMDGSLREDAKTPADYDYNVRVTAEVVAFAHAVGASVE 138 (347)
T ss_pred eecCcCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 9999987 88889999999999999854
No 149
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=31.00 E-value=5.9e+02 Score=25.98 Aligned_cols=95 Identities=8% Similarity=0.027 Sum_probs=52.9
Q ss_pred CcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcc---hHHHHHHhc
Q 017293 169 KFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIAD---SAAAALMKD 245 (374)
Q Consensus 169 ~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~D---sav~~~m~~ 245 (374)
|.++...+.+ ..+.++.+.+.+-|....++++.+.+..--.++ ...+...+.++.++.+ ..+...+++
T Consensus 300 gkrv~v~g~~--------~~~~~l~~~L~elG~~~~~v~~~~~~~~~~~~l-~~~~~~~~~~~~v~~~~d~~e~~~~l~~ 370 (429)
T cd03466 300 GRKAAIYGEP--------DFVVAITRFVLENGMVPVLIATGSESKKLKEKL-EEDLKEYVEKCVILDGADFFDIESYAKE 370 (429)
T ss_pred CCEEEEEcCH--------HHHHHHHHHHHHCCCEEEEEEeCCCChHHHHHH-HHHHHhcCCceEEEeCCCHHHHHHHHHh
Confidence 5566666542 344555555667787765666665443322222 2234555666665554 344555555
Q ss_pred CCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEec
Q 017293 246 GRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAA 288 (374)
Q Consensus 246 ~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a 288 (374)
.++|.+ + |+..-..+|++.++|++.+.
T Consensus 371 ~~~dli-------i---------G~s~~~~~a~~~~ip~~~~~ 397 (429)
T cd03466 371 LKIDVL-------I---------GNSYGRRIAEKLGIPLIRIG 397 (429)
T ss_pred cCCCEE-------E---------ECchhHHHHHHcCCCEEEec
Confidence 555554 2 22223467899999998664
No 150
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=30.94 E-value=4.8e+02 Score=26.83 Aligned_cols=87 Identities=16% Similarity=0.130 Sum_probs=45.3
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcch-HhHHHHHhhCCCCeEEEcc----hHHHHHHhcCCCCEEEEcceeeecCCCeec
Q 017293 192 VIRALHSEGVLERAYCSETRPFNQGS-RLTAFELVHDRIPATLIAD----SAAAALMKDGRVSAVIVGADRVAANGDTAN 266 (374)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~eG~-~l~a~~L~~~GI~vtlI~D----sav~~~m~~~~vd~VlvGAd~i~~nG~v~n 266 (374)
.+....+.|. +|++.. ..+.|. .+....|...|++++++.| ..+...+ +++. ++|+ .+.....-..+.
T Consensus 100 al~~ll~~Gd--~VI~~~--~~y~~t~~~~~~~l~~~Gi~v~~vd~~~d~e~l~~~l-~~~t-k~V~-~e~~~Np~~~v~ 172 (437)
T PRK05613 100 AILNLAGAGD--HIVTSP--RLYGGTETLFLVTLNRLGIEVTFVENPDDPESWQAAV-QPNT-KAFF-GETFANPQADVL 172 (437)
T ss_pred HHHHhcCCCC--EEEECC--CccHHHHHHHHHHHHhcCeEEEEECCCCCHHHHHHhC-CccC-eEEE-EECCCCCCCccc
Confidence 3444344443 677652 223232 2333457788999999963 2233344 1333 3333 233322111222
Q ss_pred ccccHHHHHHHHhcCCeEEEe
Q 017293 267 KIGTYSLALCAKFHNILFYVA 287 (374)
Q Consensus 267 kiGT~~lA~~Ak~~~vPvyV~ 287 (374)
---.++-+||.+|++++|=
T Consensus 173 --di~~I~~la~~~gi~livD 191 (437)
T PRK05613 173 --DIPAVAEVAHRNQVPLIVD 191 (437)
T ss_pred --CHHHHHHHHHHcCCeEEEE
Confidence 2456778899999999873
No 151
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=30.86 E-value=87 Score=27.90 Aligned_cols=50 Identities=22% Similarity=0.189 Sum_probs=36.1
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCC
Q 017293 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 230 (374)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~ 230 (374)
+-+-|.-|. |.|+.+..| +.||++-|.+=|+-=.+.-.+| |+.|+++|.=
T Consensus 80 ~AdlVIsHA--------GaGS~letL----~l~KPlivVvNd~LMDNHQ~EL-A~qL~~egyL 129 (170)
T KOG3349|consen 80 SADLVISHA--------GAGSCLETL----RLGKPLIVVVNDSLMDNHQLEL-AKQLAEEGYL 129 (170)
T ss_pred hccEEEecC--------CcchHHHHH----HcCCCEEEEeChHhhhhHHHHH-HHHHHhcCcE
Confidence 445666664 336666666 4489999999999877777777 7789998853
No 152
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=30.72 E-value=1.5e+02 Score=28.78 Aligned_cols=64 Identities=17% Similarity=0.089 Sum_probs=39.6
Q ss_pred ccccHHHHHHHHHHCCC-eeE-EEEecCCCCCcchHhHHHHHhhCCCCeEEEcc---------hHHHHHHhcCCCCEEEE
Q 017293 185 GYGTALGVIRALHSEGV-LER-AYCSETRPFNQGSRLTAFELVHDRIPATLIAD---------SAAAALMKDGRVSAVIV 253 (374)
Q Consensus 185 g~~tv~~~l~~a~~~g~-~~~-V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~D---------sav~~~m~~~~vd~Vlv 253 (374)
|.|+-+.-|..+.+.|. +.. +.|.=.+|..++ ...+.|||+.+++- ..+...+++.++|.+++
T Consensus 93 g~g~nl~~l~~~~~~g~l~~~i~~visn~~~~~~------~A~~~gIp~~~~~~~~~~~~~~e~~~~~~l~~~~~Dlivl 166 (280)
T TIGR00655 93 KEDHCLGDLLWRWYSGELDAEIALVISNHEDLRS------LVERFGIPFHYIPATKDNRVEHEKRQLELLKQYQVDLVVL 166 (280)
T ss_pred CCChhHHHHHHHHHcCCCCcEEEEEEEcChhHHH------HHHHhCCCEEEcCCCCcchhhhHHHHHHHHHHhCCCEEEE
Confidence 44666665556666664 233 334455665543 14577999998764 34455677778998776
Q ss_pred c
Q 017293 254 G 254 (374)
Q Consensus 254 G 254 (374)
.
T Consensus 167 a 167 (280)
T TIGR00655 167 A 167 (280)
T ss_pred e
Confidence 5
No 153
>PRK08462 biotin carboxylase; Validated
Probab=30.66 E-value=1.3e+02 Score=30.57 Aligned_cols=78 Identities=15% Similarity=0.086 Sum_probs=43.6
Q ss_pred cEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCC--cchHhHHHHHhhCCCCe-------EEEcchHHH
Q 017293 170 FSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFN--QGSRLTAFELVHDRIPA-------TLIADSAAA 240 (374)
Q Consensus 170 ~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~--eG~~l~a~~L~~~GI~v-------tlI~Dsav~ 240 (374)
..||..+.+ -.+..+++.|++.|. +|+++-+.|.. .+.+ +++..+.+ .|+.-..+-
T Consensus 5 k~ili~~~g--------~~~~~~~~~~~~~G~--~~v~~~~~~d~~~~~~~-----~ad~~~~~~~~~~~~~y~~~~~l~ 69 (445)
T PRK08462 5 KRILIANRG--------EIALRAIRTIQEMGK--EAIAIYSTADKDALYLK-----YADAKICIGGAKSSESYLNIPAII 69 (445)
T ss_pred CEEEEECCc--------HHHHHHHHHHHHcCC--CEEEEechhhcCCchhh-----hCCEEEEeCCCchhcccCCHHHHH
Confidence 467777643 235789999999875 45555444443 2222 22222211 233213444
Q ss_pred HHHhcCCCCEEEEcceeeecCC
Q 017293 241 ALMKDGRVSAVIVGADRVAANG 262 (374)
Q Consensus 241 ~~m~~~~vd~VlvGAd~i~~nG 262 (374)
.+.++.++|.|+-|.+...+|.
T Consensus 70 ~~~~~~~~D~i~pg~g~lse~~ 91 (445)
T PRK08462 70 SAAEIFEADAIFPGYGFLSENQ 91 (445)
T ss_pred HHHHHcCCCEEEECCCccccCH
Confidence 4456688999999986544444
No 154
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=30.05 E-value=4.9e+02 Score=24.71 Aligned_cols=48 Identities=10% Similarity=-0.053 Sum_probs=32.5
Q ss_pred EEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCCCCEEEEc
Q 017293 204 RAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVG 254 (374)
Q Consensus 204 ~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~vd~VlvG 254 (374)
-+++.-++-..+-.++ ++.+.+.|+++..|+|+.-+.+- +.+|.+|.-
T Consensus 191 ~I~iS~sG~t~~~~~~-~~~ak~~g~~ii~IT~~~~s~la--~~ad~~l~~ 238 (292)
T PRK11337 191 VLVVSHSGRTSDVIEA-VELAKKNGAKIICITNSYHSPIA--KLADYVICS 238 (292)
T ss_pred EEEEeCCCCCHHHHHH-HHHHHHCCCeEEEEeCCCCChhH--HhCCEEEEc
Confidence 3444444433333332 55677899999999998887776 678888864
No 155
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=30.04 E-value=1e+02 Score=29.74 Aligned_cols=58 Identities=14% Similarity=0.190 Sum_probs=38.9
Q ss_pred HHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEc---c----hHHHHHHhcCCCCEEEEcce
Q 017293 191 GVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIA---D----SAAAALMKDGRVSAVIVGAD 256 (374)
Q Consensus 191 ~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~---D----sav~~~m~~~~vd~VlvGAd 256 (374)
++++.+++.|..++|+++++.|..-|.+. + +. +..++ | ..+..+.++.++|.++.+.|
T Consensus 14 ~~~~~l~~~~~g~~vi~~d~~~~~~~~~~-~----d~---~~~~p~~~~~~~~~~l~~~~~~~~id~ii~~~d 78 (326)
T PRK12767 14 QLVKALKKSLLKGRVIGADISELAPALYF-A----DK---FYVVPKVTDPNYIDRLLDICKKEKIDLLIPLID 78 (326)
T ss_pred HHHHHHHHhccCCEEEEECCCCcchhhHh-c----cC---cEecCCCCChhHHHHHHHHHHHhCCCEEEECCc
Confidence 77788888777799999999988766542 1 11 11221 2 23445566778999988876
No 156
>PF02589 DUF162: Uncharacterised ACR, YkgG family COG1556; InterPro: IPR003741 This entry represents a domain found in lactate utilization proteins B (LutB) and C (LutC), as well as several uncharacterised proteins. Lactate utilization proteins B and C are involved in L-lactate degradation and allows cells to grow with lactate as the sole carbon source. LutB probably has a role as an electron transporter during oxidation of L-lactate.; PDB: 2G40_A.
Probab=30.03 E-value=39 Score=30.12 Aligned_cols=51 Identities=18% Similarity=0.138 Sum_probs=33.8
Q ss_pred CCCCEEEEcce-eeecCCCeecccccHHHHHHHHhcCCeEEEeccCccccCCC
Q 017293 246 GRVSAVIVGAD-RVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTL 297 (374)
Q Consensus 246 ~~vd~VlvGAd-~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~K~~~~~ 297 (374)
..+|..|.||+ +|..+|++++.-|...- .+....-.-++++.+..|+.+..
T Consensus 83 ~~ad~gIt~a~~aIAetGtlvl~~~~~~~-r~~s~lP~~hi~vv~~~kIv~~l 134 (189)
T PF02589_consen 83 EDADVGITGANYAIAETGTLVLSSGPGNR-RAVSLLPPVHIVVVGASKIVPNL 134 (189)
T ss_dssp HH-SEEEE--SEEETTTTEEEE---TTT--GGGGTSSSEEEEEEEGGGEESSH
T ss_pred hcCCEEEECccHHHHhCCeEEEeCCCCCh-hhhhhCCCeEEEEEcHHHcCCCH
Confidence 47899999999 99999999999988776 33444445566888888887653
No 157
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=30.01 E-value=2.2e+02 Score=26.59 Aligned_cols=52 Identities=25% Similarity=0.176 Sum_probs=36.2
Q ss_pred hHHHHHHhcCCC-CEEEEcceeeecCCC---------eecccccHHHHHHHHhcCCeEEEeccC
Q 017293 237 SAAAALMKDGRV-SAVIVGADRVAANGD---------TANKIGTYSLALCAKFHNILFYVAAPL 290 (374)
Q Consensus 237 sav~~~m~~~~v-d~VlvGAd~i~~nG~---------v~nkiGT~~lA~~Ak~~~vPvyV~a~~ 290 (374)
......+ ..+ |.|+--|-.....+. -+|-.||..+.-+|+..+++-+|.+.+
T Consensus 55 ~~~~~~~--~~~~d~vih~aa~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~~~~v~~ss 116 (314)
T COG0451 55 DLVDELA--KGVPDAVIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFASS 116 (314)
T ss_pred HHHHHHH--hcCCCEEEEccccCchhhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCC
Confidence 4555566 555 777766655544333 589999999999999987777666443
No 158
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=29.98 E-value=1.8e+02 Score=29.57 Aligned_cols=77 Identities=16% Similarity=0.162 Sum_probs=39.8
Q ss_pred EEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCC--cchHhHHHHHhhCCCCe-------EEEcchHHHH
Q 017293 171 SVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFN--QGSRLTAFELVHDRIPA-------TLIADSAAAA 241 (374)
Q Consensus 171 ~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~--eG~~l~a~~L~~~GI~v-------tlI~Dsav~~ 241 (374)
+||..+.+ -.+..+++.|++.|. +|+++.+.|.. .+.+ +++.-+.+ .+..-..+-.
T Consensus 4 ~iLi~g~g--------~~a~~i~~aa~~~G~--~vv~~~~~~d~~a~~~~-----~ad~~~~~~~~~~~~~y~d~~~l~~ 68 (451)
T PRK08591 4 KILIANRG--------EIALRIIRACKELGI--KTVAVHSTADRDALHVQ-----LADEAVCIGPAPSKKSYLNIPAIIS 68 (451)
T ss_pred eEEEECCC--------HHHHHHHHHHHHcCC--eEEEEcChhhccCCCHh-----HCCEEEEeCCCCcccccCCHHHHHH
Confidence 57777542 245778899988775 45555433332 2322 22211110 1211123333
Q ss_pred HHhcCCCCEEEEcceeeecCC
Q 017293 242 LMKDGRVSAVIVGADRVAANG 262 (374)
Q Consensus 242 ~m~~~~vd~VlvGAd~i~~nG 262 (374)
+.++.++|.|+-|.+-...++
T Consensus 69 ~a~~~~id~I~p~~~~~~e~~ 89 (451)
T PRK08591 69 AAEITGADAIHPGYGFLSENA 89 (451)
T ss_pred HHHHhCCCEEEECCCccccCH
Confidence 434578999998876555554
No 159
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=29.88 E-value=3.9e+02 Score=27.41 Aligned_cols=92 Identities=10% Similarity=-0.006 Sum_probs=52.6
Q ss_pred CcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCCC
Q 017293 169 KFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRV 248 (374)
Q Consensus 169 ~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~v 248 (374)
+..|+..+..+ .| ..+.+.+.+.| .+|.+.+.+|...-..++ .+|.+.|+.+..-.+. ...+ .+.
T Consensus 14 ~~~i~v~G~G~------sG--~a~a~~L~~~G--~~V~~~D~~~~~~~~~~~-~~l~~~gi~~~~~~~~--~~~~--~~~ 78 (458)
T PRK01710 14 NKKVAVVGIGV------SN--IPLIKFLVKLG--AKVTAFDKKSEEELGEVS-NELKELGVKLVLGENY--LDKL--DGF 78 (458)
T ss_pred CCeEEEEcccH------HH--HHHHHHHHHCC--CEEEEECCCCCccchHHH-HHHHhCCCEEEeCCCC--hHHh--ccC
Confidence 45677776431 12 23335555656 478888877643211222 3488889877654332 2335 678
Q ss_pred CEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEE
Q 017293 249 SAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFY 285 (374)
Q Consensus 249 d~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvy 285 (374)
|.||+.. +|-. +.+.-..|++.|+|++
T Consensus 79 dlVV~Sp-gi~~---------~~p~~~~a~~~~i~i~ 105 (458)
T PRK01710 79 DVIFKTP-SMRI---------DSPELVKAKEEGAYIT 105 (458)
T ss_pred CEEEECC-CCCC---------CchHHHHHHHcCCcEE
Confidence 9887753 2222 2355666777778776
No 160
>PRK00770 deoxyhypusine synthase-like protein; Provisional
Probab=29.82 E-value=88 Score=31.87 Aligned_cols=115 Identities=17% Similarity=0.213 Sum_probs=60.2
Q ss_pred CCcEEEEecCCCcccccccc-cHHHHHHHHHHCCCeeEEEEe----------cC--CCCCcchH-hHHHHHhhCCCC---
Q 017293 168 SKFSVLTHCNTGSLATAGYG-TALGVIRALHSEGVLERAYCS----------ET--RPFNQGSR-LTAFELVHDRIP--- 230 (374)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~-tv~~~l~~a~~~g~~~~V~v~----------Es--rP~~eG~~-l~a~~L~~~GI~--- 230 (374)
+..++||+ +|.+.++|.+ -+ |..+.++ +.+.++|+ ++ -|.+.|.- +--.+|.+.||+
T Consensus 51 ~~tvfLtl--tgamisaGLr~~i---i~~LIr~-g~VD~IVTTGAnl~hD~~~alg~~~y~G~~~~dd~~Lr~~GinRI~ 124 (384)
T PRK00770 51 GVTVGLTL--SGAMTPAGFGVSA---LAPLIEA-GFIDWIISTGANLYHDLHYALGLPLFAGHPFVDDVKLREEGIIRIY 124 (384)
T ss_pred CCcEEEEe--ccchhhhhcChHH---HHHHHHc-CCccEEEcCCccHHHHHHHHhCCCcccCCCCCCHHHHHHcCCCccc
Confidence 44566666 6888887776 34 4455554 45777777 22 37667652 224578999964
Q ss_pred eEEEcchHHHHHHhcCCCCEEEEcce--eeecCCCeecccccH-------------HHHHHHHhcCCeEEEeccC
Q 017293 231 ATLIADSAAAALMKDGRVSAVIVGAD--RVAANGDTANKIGTY-------------SLALCAKFHNILFYVAAPL 290 (374)
Q Consensus 231 vtlI~Dsav~~~m~~~~vd~VlvGAd--~i~~nG~v~nkiGT~-------------~lA~~Ak~~~vPvyV~a~~ 290 (374)
=++|+....-.+- +-++.++=++. ....-+.++..+|-+ .+-..|.+++|||||-+.+
T Consensus 125 dv~ip~e~~~~~e--~~l~~il~~~~~~~~~s~~E~i~~LGk~i~~~~~~~~~~e~SiL~~Ayk~~IPVf~Pa~~ 197 (384)
T PRK00770 125 DIIFDYDVLLETD--AFIREILKAEPFQKRMGTAEFHYLLGKYVREVEKQLGVPHKSLLATAYEYGVPIYTSSPG 197 (384)
T ss_pred ccCcChHHHHHHH--HHHHHHHHhccccCCccHHHHHHHHHHHhhhhcccCCCCcccHHHHHHHcCCCEECCCch
Confidence 4455543332221 22222222221 111111222223322 3345678899999986644
No 161
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=29.75 E-value=1.2e+02 Score=23.35 Aligned_cols=79 Identities=14% Similarity=0.085 Sum_probs=48.0
Q ss_pred EEEecCCCCCcchHhHHHHHhhCCC-CeEEEcchHH-HHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHh-cC
Q 017293 205 AYCSETRPFNQGSRLTAFELVHDRI-PATLIADSAA-AALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKF-HN 281 (374)
Q Consensus 205 V~v~EsrP~~eG~~l~a~~L~~~GI-~vtlI~Dsav-~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~-~~ 281 (374)
|.++|..|.... ++.+.|...|+ .|+...+..- -..+++...|.+++..+ .-..-|-..+..+.+. ++
T Consensus 1 Ilivd~~~~~~~--~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~iiid~~-------~~~~~~~~~~~~i~~~~~~ 71 (112)
T PF00072_consen 1 ILIVDDDPEIRE--LLEKLLERAGYEEVTTASSGEEALELLKKHPPDLIIIDLE-------LPDGDGLELLEQIRQINPS 71 (112)
T ss_dssp EEEEESSHHHHH--HHHHHHHHTTEEEEEEESSHHHHHHHHHHSTESEEEEESS-------SSSSBHHHHHHHHHHHTTT
T ss_pred cEEEECCHHHHH--HHHHHHHhCCCCEEEEECCHHHHHHHhcccCceEEEEEee-------ecccccccccccccccccc
Confidence 445566665532 23456778898 7777776544 33456677888887742 2223444455555444 48
Q ss_pred CeEEEeccCcc
Q 017293 282 ILFYVAAPLTS 292 (374)
Q Consensus 282 vPvyV~a~~~K 292 (374)
+|+++++....
T Consensus 72 ~~ii~~t~~~~ 82 (112)
T PF00072_consen 72 IPIIVVTDEDD 82 (112)
T ss_dssp SEEEEEESSTS
T ss_pred ccEEEecCCCC
Confidence 99999875443
No 162
>PRK00648 Maf-like protein; Reviewed
Probab=29.71 E-value=3.1e+02 Score=24.96 Aligned_cols=42 Identities=17% Similarity=0.131 Sum_probs=32.3
Q ss_pred CCCEEEEcceeee-cCCCeecccccHHHH--HHHHhcCCeEEEec
Q 017293 247 RVSAVIVGADRVA-ANGDTANKIGTYSLA--LCAKFHNILFYVAA 288 (374)
Q Consensus 247 ~vd~VlvGAd~i~-~nG~v~nkiGT~~lA--~~Ak~~~vPvyV~a 288 (374)
.-+.+++|||.|. -||.++.|=.+..-| ++....|.+..|.+
T Consensus 63 ~~~~~VI~aDTvV~~~g~ilgKP~~~~eA~~~L~~lsG~~h~v~T 107 (191)
T PRK00648 63 FPDELIITADTIVWYDGKVLGKPKDEEEAVEMLRTLSGKTHEVIT 107 (191)
T ss_pred CCCCEEEEeCeEEEECCEEeCCCCCHHHHHHHHHHhCCCCeEEEE
Confidence 3578999999977 488899999998877 46666777665543
No 163
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=29.66 E-value=1.7e+02 Score=28.54 Aligned_cols=64 Identities=13% Similarity=0.081 Sum_probs=38.0
Q ss_pred ccccHHHHHHHHHHCCC-eeE-EEEecCCCCCcchHhHHHHHhhCCCCeEEEc---------chHHHHHHhcCCCCEEEE
Q 017293 185 GYGTALGVIRALHSEGV-LER-AYCSETRPFNQGSRLTAFELVHDRIPATLIA---------DSAAAALMKDGRVSAVIV 253 (374)
Q Consensus 185 g~~tv~~~l~~a~~~g~-~~~-V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~---------Dsav~~~m~~~~vd~Vlv 253 (374)
|.|+-+..|..+.++|. +.+ +.|.=.+|.. .....+.|||+.+++ |..+...++..++|.+++
T Consensus 102 g~g~nl~al~~~~~~~~l~~~i~~visn~~~~------~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivl 175 (289)
T PRK13010 102 KFDHCLNDLLYRWRMGELDMDIVGIISNHPDL------QPLAVQHDIPFHHLPVTPDTKAQQEAQILDLIETSGAELVVL 175 (289)
T ss_pred CCCccHHHHHHHHHCCCCCcEEEEEEECChhH------HHHHHHcCCCEEEeCCCcccccchHHHHHHHHHHhCCCEEEE
Confidence 34565555555566554 333 3344555533 122456799999865 345566677778898766
Q ss_pred c
Q 017293 254 G 254 (374)
Q Consensus 254 G 254 (374)
.
T Consensus 176 a 176 (289)
T PRK13010 176 A 176 (289)
T ss_pred e
Confidence 4
No 164
>COG0424 Maf Nucleotide-binding protein implicated in inhibition of septum formation [Cell division and chromosome partitioning]
Probab=29.64 E-value=1.8e+02 Score=26.68 Aligned_cols=75 Identities=21% Similarity=0.210 Sum_probs=44.8
Q ss_pred CCCeeEEEEec--CCCCCcc-hHhHHHHHhhCCCCeEEEcchHHHHHHhcCCCCEEEEcceeeec-CCCeecccccHHHH
Q 017293 199 EGVLERAYCSE--TRPFNQG-SRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAA-NGDTANKIGTYSLA 274 (374)
Q Consensus 199 ~g~~~~V~v~E--srP~~eG-~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~vd~VlvGAd~i~~-nG~v~nkiGT~~lA 274 (374)
.|..|.|+..+ ..|...+ -+-.+.+|+...- .+++... .-|.+|+|||.|+. ||-+..|-.+..-|
T Consensus 21 ~gi~f~~~~~~iDE~~~~~~~P~~~v~~LA~~KA-------~~va~~~---~~~~~VigaDtvv~ldgrilgKP~~~~eA 90 (193)
T COG0424 21 LGIPFEVIPSDIDEPLLKAEEPREYVLRLAEEKA-------RAVAARL---PPDALVIGADTVVVLDGRILGKPKDEEEA 90 (193)
T ss_pred CCCCeEEecCCCCCCcccCCCHHHHHHHHHHHHH-------HHHHHhC---CCCCEEEecCeEEEECCEEecCCCCHHHH
Confidence 37899999663 2222222 2223455554321 1122222 25999999999887 88899999998877
Q ss_pred H--HHHhcCCe
Q 017293 275 L--CAKFHNIL 283 (374)
Q Consensus 275 ~--~Ak~~~vP 283 (374)
. +.+-.|.-
T Consensus 91 ~~~L~~lSG~~ 101 (193)
T COG0424 91 REMLRKLSGRT 101 (193)
T ss_pred HHHHHHhcCCe
Confidence 4 44444443
No 165
>PRK05968 hypothetical protein; Provisional
Probab=29.57 E-value=5.9e+02 Score=25.50 Aligned_cols=86 Identities=14% Similarity=0.095 Sum_probs=44.3
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcc-hHhHHHHHhhCCCCeEEEcch---HHHHHHhcCCCCEEEEcceeeecCCCeecc
Q 017293 192 VIRALHSEGVLERAYCSETRPFNQG-SRLTAFELVHDRIPATLIADS---AAAALMKDGRVSAVIVGADRVAANGDTANK 267 (374)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~eG-~~l~a~~L~~~GI~vtlI~Ds---av~~~m~~~~vd~VlvGAd~i~~nG~v~nk 267 (374)
.+....+.|. +|++.+ |.+.+ .++....+...|++++++.-. .+-..+ ++...|++ +. +.|-+...
T Consensus 94 al~al~~~Gd--~Vl~~~--~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i--~~tklV~i--e~--pt~~~~~~ 163 (389)
T PRK05968 94 TVLSFVEPGD--RIVAVR--HVYPDAFRLFETILKRMGVEVDYVDGRDEEAVAKAL--PGAKLLYL--ES--PTSWVFEL 163 (389)
T ss_pred HHHHHhCCCC--EEEEeC--CCchHHHHHHHHHHHHcCceEEEeCCCCHHHHHHhc--ccCCEEEE--EC--CCCCCCcH
Confidence 3433344444 566554 44433 223333466789999887422 233334 45555554 11 22222222
Q ss_pred cccHHHHHHHHhcCCeEEEe
Q 017293 268 IGTYSLALCAKFHNILFYVA 287 (374)
Q Consensus 268 iGT~~lA~~Ak~~~vPvyV~ 287 (374)
.=-..++-+||.+|++++|=
T Consensus 164 ~dl~~i~~la~~~gi~vivD 183 (389)
T PRK05968 164 QDVAALAALAKRHGVVTMID 183 (389)
T ss_pred HHHHHHHHHHHHcCCEEEEE
Confidence 22234677889999998873
No 166
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=29.41 E-value=1.5e+02 Score=29.51 Aligned_cols=64 Identities=19% Similarity=0.123 Sum_probs=41.4
Q ss_pred CcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcc--hHhHHHHHhhCCCCeEEEcchHHH
Q 017293 169 KFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQG--SRLTAFELVHDRIPATLIADSAAA 240 (374)
Q Consensus 169 ~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG--~~l~a~~L~~~GI~vtlI~Dsav~ 240 (374)
..+|.|||+- ...+...++.|++.|....+.+..+-..... .+ .++.+.+.|.++.+|+|++-.
T Consensus 103 ~iri~~~~~e-------~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~-~a~~~~~~Ga~~i~i~DT~G~ 168 (333)
T TIGR03217 103 TVRVATHCTE-------ADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAE-QAKLMESYGADCVYIVDSAGA 168 (333)
T ss_pred EEEEEeccch-------HHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHH-HHHHHHhcCCCEEEEccCCCC
Confidence 3557788753 1345667888888888777777665433222 12 245567789999999997643
No 167
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=29.27 E-value=2.1e+02 Score=30.80 Aligned_cols=110 Identities=15% Similarity=0.193 Sum_probs=55.9
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhh-----CCC----CeEEE----
Q 017293 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVH-----DRI----PATLI---- 234 (374)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~-----~GI----~vtlI---- 234 (374)
+|.+||..|-+|.+ -..+.+.+.++|. +|+++- |......++ +.++.+ .|. .+.++
T Consensus 79 ~gKvVLVTGATGgI-------G~aLAr~LLk~G~--~Vval~-Rn~ekl~~l-~~~l~~~~L~~~Ga~~~~~v~iV~gDL 147 (576)
T PLN03209 79 DEDLAFVAGATGKV-------GSRTVRELLKLGF--RVRAGV-RSAQRAESL-VQSVKQMKLDVEGTQPVEKLEIVECDL 147 (576)
T ss_pred CCCEEEEECCCCHH-------HHHHHHHHHHCCC--eEEEEe-CCHHHHHHH-HHHhhhhccccccccccCceEEEEecC
Confidence 56788887766532 2345566666665 455443 322212222 222322 121 12222
Q ss_pred cc-hHHHHHHhcCCCCEEEEcceeeecC-----C-CeecccccHHHHHHHHhcCCeEEEeccC
Q 017293 235 AD-SAAAALMKDGRVSAVIVGADRVAAN-----G-DTANKIGTYSLALCAKFHNILFYVAAPL 290 (374)
Q Consensus 235 ~D-sav~~~m~~~~vd~VlvGAd~i~~n-----G-~v~nkiGT~~lA~~Ak~~~vPvyV~a~~ 290 (374)
.| ..+...+ +++|.||..|-....+ + --+|..|+..+.-+|+..++.-+|..-+
T Consensus 148 tD~esI~~aL--ggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSS 208 (576)
T PLN03209 148 EKPDQIGPAL--GNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTS 208 (576)
T ss_pred CCHHHHHHHh--cCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEcc
Confidence 12 2344456 7889887654221100 0 1136678888888888888765554444
No 168
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=29.24 E-value=1.4e+02 Score=30.56 Aligned_cols=107 Identities=15% Similarity=0.143 Sum_probs=55.4
Q ss_pred CcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCCC
Q 017293 169 KFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRV 248 (374)
Q Consensus 169 ~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~v 248 (374)
..+||.-|-+|-+ | ..+++.+.++|. +|++...........+ ..+.. .-.+.++.-...-..+ .++
T Consensus 120 ~mkILVTGatGFI-----G--s~Lv~~Ll~~G~--~V~~ldr~~~~~~~~~--~~~~~-~~~~~~~~~Di~~~~~--~~~ 185 (436)
T PLN02166 120 RLRIVVTGGAGFV-----G--SHLVDKLIGRGD--EVIVIDNFFTGRKENL--VHLFG-NPRFELIRHDVVEPIL--LEV 185 (436)
T ss_pred CCEEEEECCccHH-----H--HHHHHHHHHCCC--EEEEEeCCCCccHhHh--hhhcc-CCceEEEECccccccc--cCC
Confidence 4677777765432 1 234556666564 5665553221111111 11211 1133333322222234 578
Q ss_pred CEEEEcceeeecCCC--------eecccccHHHHHHHHhcCCeEEEecc
Q 017293 249 SAVIVGADRVAANGD--------TANKIGTYSLALCAKFHNILFYVAAP 289 (374)
Q Consensus 249 d~VlvGAd~i~~nG~--------v~nkiGT~~lA~~Ak~~~vPvyV~a~ 289 (374)
|.|+=-|-....... -.|-.||..+.-+|+.+++.|+.+..
T Consensus 186 D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~r~V~~SS 234 (436)
T PLN02166 186 DQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLTST 234 (436)
T ss_pred CEEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECc
Confidence 888776643211111 16888999999999999998766544
No 169
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=29.23 E-value=5.1e+02 Score=25.15 Aligned_cols=110 Identities=19% Similarity=0.238 Sum_probs=60.0
Q ss_pred HHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCC------c--------ch-
Q 017293 153 IGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFN------Q--------GS- 217 (374)
Q Consensus 153 I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~------e--------G~- 217 (374)
++..+.+.|. +.+||..+-+| .-..+++.....|.+ ++.+.+..+.. | |.
T Consensus 9 ~G~eaq~kL~------~s~VLIvG~gG--------LG~EiaKnLalaGVg-~itI~D~d~ve~snL~rqf~~~~~dIGk~ 73 (286)
T cd01491 9 LGHEAMKKLQ------KSNVLISGLGG--------LGVEIAKNLILAGVK-SVTLHDTKPCSWSDLSSQFYLREEDIGKN 73 (286)
T ss_pred cCHHHHHHHh------cCcEEEEcCCH--------HHHHHHHHHHHcCCC-eEEEEcCCccchhhcccCccCChHHhCHH
Confidence 4455566666 46777776432 223355555556764 34444433321 0 21
Q ss_pred --HhHHHHHhhCC--CCeEEEcchHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEec
Q 017293 218 --RLTAFELVHDR--IPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAA 288 (374)
Q Consensus 218 --~l~a~~L~~~G--I~vtlI~Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a 288 (374)
..++..|++.+ ++++.....--...+ .+.|.||...|.+.. -..+.-+|+.++|||+.+.
T Consensus 74 Kaea~~~~L~eLNp~V~V~~~~~~~~~~~l--~~fdvVV~~~~~~~~---------~~~in~~c~~~~ipfI~a~ 137 (286)
T cd01491 74 RAEASQARLAELNPYVPVTVSTGPLTTDEL--LKFQVVVLTDASLED---------QLKINEFCHSPGIKFISAD 137 (286)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeccCCHHHH--hcCCEEEEecCCHHH---------HHHHHHHHHHcCCEEEEEe
Confidence 12234455544 667666654333456 788988776553211 1234457899999999864
No 170
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=29.09 E-value=4.9e+02 Score=24.45 Aligned_cols=33 Identities=21% Similarity=0.096 Sum_probs=27.1
Q ss_pred HHHHHhhCCCCeEEEcchHHHHHHhcCCCCEEEEc
Q 017293 220 TAFELVHDRIPATLIADSAAAALMKDGRVSAVIVG 254 (374)
Q Consensus 220 ~a~~L~~~GI~vtlI~Dsav~~~m~~~~vd~VlvG 254 (374)
.++.+++.|+++..|+|+.-..+- ...|.+|..
T Consensus 194 ~~~~ak~~ga~iI~IT~~~~s~la--~~ad~~l~~ 226 (278)
T PRK11557 194 AADEALRVGAKVLAITGFTPNALQ--QRASHCLYT 226 (278)
T ss_pred HHHHHHHcCCCEEEEcCCCCCchH--HhCCEEEEe
Confidence 356788999999999998877776 678888864
No 171
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=28.91 E-value=6e+02 Score=25.42 Aligned_cols=85 Identities=13% Similarity=0.116 Sum_probs=46.5
Q ss_pred HHHHHHHHHHCCCeeEEEEecCCCCCcchHhHH-HHHhhCCCCeEEEcc---hHHHHHHhcCCCCEEEEcceeeecCCCe
Q 017293 189 ALGVIRALHSEGVLERAYCSETRPFNQGSRLTA-FELVHDRIPATLIAD---SAAAALMKDGRVSAVIVGADRVAANGDT 264 (374)
Q Consensus 189 v~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a-~~L~~~GI~vtlI~D---sav~~~m~~~~vd~VlvGAd~i~~nG~v 264 (374)
...++....+.|. +|++. .|.+.+....+ ..+...|+++..+.. ..+...+ +++...|++ + +.
T Consensus 78 i~~al~all~~GD--~Vl~~--~~~y~~t~~~~~~~~~~~gi~v~~~d~~~~e~l~~~i-~~~tklV~l-------e-sp 144 (377)
T TIGR01324 78 VTNSILAFVKAGD--HVLMV--DSAYEPTRYFCDIVLKRMGVDITYYDPLIGEDIATLI-QPNTKVLFL-------E-AP 144 (377)
T ss_pred HHHHHHHhcCCCC--EEEEc--CCCcHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhc-CCCceEEEE-------E-CC
Confidence 3344554444443 56655 45565433223 235678999887631 3444444 234444432 2 24
Q ss_pred ecccccH----HHHHHHHhcCCeEEE
Q 017293 265 ANKIGTY----SLALCAKFHNILFYV 286 (374)
Q Consensus 265 ~nkiGT~----~lA~~Ak~~~vPvyV 286 (374)
.|..|.. .++-+|+.+|++++|
T Consensus 145 ~Np~g~~~dl~~I~~la~~~g~~liv 170 (377)
T TIGR01324 145 SSITFEIQDIPAIAKAARNPGIVIMI 170 (377)
T ss_pred CCCCCcHHHHHHHHHHHHHcCCEEEE
Confidence 4455544 367788999998886
No 172
>cd00555 Maf Nucleotide binding protein Maf. Maf has been implicated in inhibition of septum formation in eukaryotes, bacteria and archaea, but homologs in B.subtilis and S.cerevisiae are nonessential for cell division. Maf has been predicted to be a nucleotide- or nucleic acid-binding protein with structural similarity to the hypoxanthine/xanthine NTP pyrophosphatase Ham1 from Methanococcus jannaschii, RNase H from Escherichia coli, and some other nucleotide or RNA-binding proteins.
Probab=28.89 E-value=3.4e+02 Score=24.38 Aligned_cols=79 Identities=19% Similarity=0.136 Sum_probs=47.5
Q ss_pred CCCeeEEE---EecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCCCCEEEEcceeeec-CCCeecccccHHHH
Q 017293 199 EGVLERAY---CSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAA-NGDTANKIGTYSLA 274 (374)
Q Consensus 199 ~g~~~~V~---v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~vd~VlvGAd~i~~-nG~v~nkiGT~~lA 274 (374)
.|..|.++ +.|+.+..+...-.+..|+... +-.+.++..-+.+++|||.|+. ||.++.|=.+..-|
T Consensus 17 ~g~~f~~~~~~iDE~~~~~~~p~~~v~~lA~~K----------a~~v~~~~~~~~liI~aDtvv~~~g~il~KP~~~~eA 86 (180)
T cd00555 17 LGIPFEVVPSDIDETPIKGESPEDYVLRLAEAK----------AEAVAARLPPDALVIGADTVVVLDGRILGKPKDREEA 86 (180)
T ss_pred CCCCeEEEcCCCCCCCCCCCCHHHHHHHHHHHH----------HHHHHHhCCCCCEEEEecEEEEECCEEEcCCCCHHHH
Confidence 37788887 4466554443222344454321 1112211112679999999775 88899999999877
Q ss_pred H--HHHhcCCeEEEe
Q 017293 275 L--CAKFHNILFYVA 287 (374)
Q Consensus 275 ~--~Ak~~~vPvyV~ 287 (374)
. +-...|.+.-|.
T Consensus 87 ~~~L~~lsg~~h~v~ 101 (180)
T cd00555 87 REMLKRLSGRTHEVY 101 (180)
T ss_pred HHHHHHHcCCCcEEE
Confidence 4 555566665554
No 173
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=28.73 E-value=6.4e+02 Score=25.65 Aligned_cols=86 Identities=10% Similarity=0.007 Sum_probs=47.2
Q ss_pred ccHHHHHHHHHHCC-CeeEEEEe-cCCCCCcchHhHHHHHhhCCCCe--E---EEcch----HHHHHHhcCCCCEEEEcc
Q 017293 187 GTALGVIRALHSEG-VLERAYCS-ETRPFNQGSRLTAFELVHDRIPA--T---LIADS----AAAALMKDGRVSAVIVGA 255 (374)
Q Consensus 187 ~tv~~~l~~a~~~g-~~~~V~v~-EsrP~~eG~~l~a~~L~~~GI~v--t---lI~Ds----av~~~m~~~~vd~VlvGA 255 (374)
..+..+.+.+.+.| ...-+..+ -..|..++... .+++.+.|++. . ++.|. .+..++++.+.|.++.+.
T Consensus 303 ~~~~~~~~~l~elG~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~pDl~i~~~ 381 (426)
T cd01972 303 AYGHLLIAVLRELGFGEVPVVLVFHHDPTYDRGDS-EKDLLEHGVDPEIDITKYTVSNGQYYQFYNLLKRVKPDFIIFRH 381 (426)
T ss_pred ccHHHHHHHHHHcCCceEEEEEeccCchhhhcchh-HHHHhcCCcccccccceeeecCCCHHHHHHHHHHhCCCEEEEcC
Confidence 34566677777878 55443333 23334443222 23566667632 1 44554 566677778888765432
Q ss_pred eeeecCCCeecccccHHHHHHHHhcCCeEEEe
Q 017293 256 DRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (374)
Q Consensus 256 d~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~ 287 (374)
-. ... ..|+..|+|++-+
T Consensus 382 ~~-------------~~~-~~~~~~gip~~~~ 399 (426)
T cd01972 382 GG-------------LFP-DATVYLGIPVVPL 399 (426)
T ss_pred CC-------------ccH-HHHHhcCCCEEec
Confidence 11 111 2247799999866
No 174
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=28.72 E-value=54 Score=29.10 Aligned_cols=36 Identities=31% Similarity=0.607 Sum_probs=22.2
Q ss_pred HHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHH
Q 017293 155 SYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRAL 196 (374)
Q Consensus 155 ~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~tv~~~l~~a 196 (374)
..+.+.|.+. ++--||.||+.|+--| |+|.+.+|..
T Consensus 80 ~~aL~~ild~---~n~PvLiHC~~G~~rT---G~vvg~lRk~ 115 (164)
T PF03162_consen 80 AEALEIILDP---RNYPVLIHCNHGKDRT---GLVVGCLRKL 115 (164)
T ss_dssp HHHHHHHH-G---GG-SEEEE-SSSSSHH---HHHHHHHHHH
T ss_pred HHHHHHHhCC---CCCCEEEEeCCCCcch---hhHHHHHHHH
Confidence 3344445422 2457999999997655 7888888854
No 175
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=28.13 E-value=5.4e+02 Score=24.65 Aligned_cols=153 Identities=20% Similarity=0.216 Sum_probs=78.3
Q ss_pred HHHHHHHHhhccC---CCCCHHHHHHHHHHHHHHHHh--CCCCccc----HHHHHHHHHHHHHHHh---h--ccCCHHHH
Q 017293 66 ALSLAVEVFNLNA---FSGTAADAASFLGNKLEYLVS--SRPTAVN----LSDAAAKLKEIISKAA---A--TASEANSV 131 (374)
Q Consensus 66 a~~l~~~~~~~~~---~~~~~~el~~~l~~~~~~L~~--~RPt~v~----l~nai~~~~~~i~~~~---~--~~~~~~e~ 131 (374)
|+|++.++.+.-. ...-.+.+...+++..+.+-+ .-|--|. +.+....+++..-+.. . .-.+-+++
T Consensus 21 AwGIAk~l~~~GAeL~fTy~~e~l~krv~~la~~~~s~~v~~cDV~~d~~i~~~f~~i~~~~g~lD~lVHsIaFa~k~el 100 (259)
T COG0623 21 AWGIAKALAEQGAELAFTYQGERLEKRVEELAEELGSDLVLPCDVTNDESIDALFATIKKKWGKLDGLVHSIAFAPKEEL 100 (259)
T ss_pred HHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHhhccCCeEEecCCCCHHHHHHHHHHHHHhhCcccEEEEEeccCChHHh
Confidence 4666666655310 001123566667776666644 2333343 4444444444433221 0 11344455
Q ss_pred HHHHHHHHH-HHHHH-HHH--HHHHHHHHHHHHhHhhhcCCCcEEEEecCCCc-ccccccccHHHHHHHHHHCCCeeEEE
Q 017293 132 FQAYIEAAE-IMLKD-DVA--TNKAIGSYGASFLQNQLKNSKFSVLTHCNTGS-LATAGYGTALGVIRALHSEGVLERAY 206 (374)
Q Consensus 132 ~~~l~~~~~-~~~~e-~~~--a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~-lat~g~~tv~~~l~~a~~~g~~~~V~ 206 (374)
.-.+++..+ .|..- ++. .--.+++.+..++. +|..|+|..+=|+ -+--.|. +.++-+.|.+.
T Consensus 101 ~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~-----~ggSiltLtYlgs~r~vPnYN-vMGvAKAaLEa------- 167 (259)
T COG0623 101 KGDYLDTSREGFLIAMDISAYSFTALAKAARPLMN-----NGGSILTLTYLGSERVVPNYN-VMGVAKAALEA------- 167 (259)
T ss_pred CCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcC-----CCCcEEEEEeccceeecCCCc-hhHHHHHHHHH-------
Confidence 555555322 22111 122 12344555566666 7888998888665 3445554 55555666543
Q ss_pred EecCCCCCcchHhHHHHHhhCCCCeEEEcchHHH
Q 017293 207 CSETRPFNQGSRLTAFELVHDRIPATLIADSAAA 240 (374)
Q Consensus 207 v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~ 240 (374)
..|-+|++|-+.||.|--|+=.-+-
T Consensus 168 ---------svRyLA~dlG~~gIRVNaISAGPIr 192 (259)
T COG0623 168 ---------SVRYLAADLGKEGIRVNAISAGPIR 192 (259)
T ss_pred ---------HHHHHHHHhCccCeEEeeecccchH
Confidence 2345577888888887777654443
No 176
>PRK13936 phosphoheptose isomerase; Provisional
Probab=28.07 E-value=4.5e+02 Score=23.69 Aligned_cols=32 Identities=9% Similarity=-0.023 Sum_probs=19.9
Q ss_pred HHHHhhCCCCeEEEcc---hHHHHHHhcCCCCEEEEc
Q 017293 221 AFELVHDRIPATLIAD---SAAAALMKDGRVSAVIVG 254 (374)
Q Consensus 221 a~~L~~~GI~vtlI~D---sav~~~m~~~~vd~VlvG 254 (374)
++.+++.|+++..|++ +.++-+. ...|.+|.-
T Consensus 131 ~~~ak~~g~~iI~IT~~~~s~l~~l~--~~ad~~l~v 165 (197)
T PRK13936 131 IQAAHEREMHVVALTGRDGGKMASLL--LPEDVEIRV 165 (197)
T ss_pred HHHHHHCCCeEEEEECCCCChhhhhh--ccCCEEEEe
Confidence 5567788888888887 4333332 246766543
No 177
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=27.92 E-value=3.2e+02 Score=21.94 Aligned_cols=62 Identities=19% Similarity=0.143 Sum_probs=34.4
Q ss_pred HHhhCCCCeEEEcchHHHHHH--hcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccCc
Q 017293 223 ELVHDRIPATLIADSAAAALM--KDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLT 291 (374)
Q Consensus 223 ~L~~~GI~vtlI~Dsav~~~m--~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~ 291 (374)
.|...|.++..++|....... .-.+-|.+|+ +...|.. .-+..++-.|+.+|+|+++++...
T Consensus 34 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~----iS~~g~~---~~~~~~~~~a~~~g~~iv~iT~~~ 97 (139)
T cd05013 34 KLLRLGKPVVLLSDPHLQLMSAANLTPGDVVIA----ISFSGET---KETVEAAEIAKERGAKVIAITDSA 97 (139)
T ss_pred HHHHcCCceEEecCHHHHHHHHHcCCCCCEEEE----EeCCCCC---HHHHHHHHHHHHcCCeEEEEcCCC
Confidence 344455555555554432221 0134455554 3344542 224556678999999999987643
No 178
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=27.77 E-value=6.3e+02 Score=25.28 Aligned_cols=85 Identities=21% Similarity=0.136 Sum_probs=43.9
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcch-HhHHHHHhhCCCCeEEEcc---hHHHHHHhcCCCCEEEEcceee-ecCCCeec
Q 017293 192 VIRALHSEGVLERAYCSETRPFNQGS-RLTAFELVHDRIPATLIAD---SAAAALMKDGRVSAVIVGADRV-AANGDTAN 266 (374)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~eG~-~l~a~~L~~~GI~vtlI~D---sav~~~m~~~~vd~VlvGAd~i-~~nG~v~n 266 (374)
.+....+.|. +|++. +|.+.+. .+....+...|++++.+.- ..+...+ +++...|++- .. -+.|.+..
T Consensus 92 al~al~~~Gd--~Vi~~--~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i-~~~tklV~ie--~p~NptG~v~d 164 (390)
T PRK08133 92 VVMALLQAGD--HVVSS--RSLFGSTVSLFEKIFARFGIETTFVDLTDLDAWRAAV-RPNTKLFFLE--TPSNPLTELAD 164 (390)
T ss_pred HHHHHhCCCC--EEEEc--cCcchhHHHHHHHHHHHcCcEEEEECCCCHHHHHHhc-CcCCeEEEEE--CCCCCCCCcCC
Confidence 4444444454 56653 3444332 2222346678999888742 2333334 2444444431 11 12333321
Q ss_pred ccccHHHHHHHHhcCCeEEE
Q 017293 267 KIGTYSLALCAKFHNILFYV 286 (374)
Q Consensus 267 kiGT~~lA~~Ak~~~vPvyV 286 (374)
+ -.++-+|++++++++|
T Consensus 165 -l--~~I~~la~~~gi~liv 181 (390)
T PRK08133 165 -I--AALAEIAHAAGALLVV 181 (390)
T ss_pred -H--HHHHHHHHHcCCEEEE
Confidence 1 5677789999999887
No 179
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=27.57 E-value=1.3e+02 Score=30.25 Aligned_cols=101 Identities=15% Similarity=0.098 Sum_probs=68.2
Q ss_pred cccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhH---HHHHh-hC-CCCeEEEcchHHH--HHHhcCCCCEEEEcceee
Q 017293 186 YGTALGVIRALHSEGVLERAYCSETRPFNQGSRLT---AFELV-HD-RIPATLIADSAAA--ALMKDGRVSAVIVGADRV 258 (374)
Q Consensus 186 ~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~---a~~L~-~~-GI~vtlI~Dsav~--~~m~~~~vd~VlvGAd~i 258 (374)
+-++.++++.|.+.+..+-+=+.++.=.+-|..+. .+.++ +. ++||.+-.|..-. .++ .-++ .|-.+|
T Consensus 28 ~e~~~avi~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~v~~~ae~~~~VPVaLHLDHg~~~e~i~--~Ai~---~GFtSV 102 (347)
T PRK13399 28 MEQILAIMEAAEATDSPVILQASRGARKYAGDAMLRHMVLAAAEMYPDIPICLHQDHGNSPATCQ--SAIR---SGFTSV 102 (347)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhcCCCcEEEECCCCCCHHHHH--HHHh---cCCCEE
Confidence 46788899999887766544444433233454432 23344 34 4999999998743 333 3333 588999
Q ss_pred ecCCCee-----------cccccHHHHHHHHhcCCeEEEeccCccc
Q 017293 259 AANGDTA-----------NKIGTYSLALCAKFHNILFYVAAPLTSI 293 (374)
Q Consensus 259 ~~nG~v~-----------nkiGT~~lA~~Ak~~~vPvyV~a~~~K~ 293 (374)
+-||+-. |--=|..+.-.|+.+|++|= +|.-.+
T Consensus 103 MiDgS~l~~~~~~~~~eeNI~~Trevve~Ah~~GvsVE--aELG~i 146 (347)
T PRK13399 103 MMDGSLLADGKTPASYDYNVDVTRRVTEMAHAVGVSVE--GELGCL 146 (347)
T ss_pred EEeCCCCCCCCCccCHHHHHHHHHHHHHHHHHcCCeEE--EEeeec
Confidence 9999977 77889999999999999886 444433
No 180
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=27.46 E-value=2.7e+02 Score=22.64 Aligned_cols=58 Identities=17% Similarity=0.182 Sum_probs=36.2
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchH
Q 017293 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSA 238 (374)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsa 238 (374)
.++.++..|+||. ..-++..++.|+++|.+.-++...+ .+ +..-.+.|+++..+|+..
T Consensus 43 ~~dl~I~iS~SG~-----t~e~i~~~~~a~~~g~~iI~IT~~~-------~l-~~~~~~~~~~~~~~p~~~ 100 (119)
T cd05017 43 RKTLVIAVSYSGN-----TEETLSAVEQAKERGAKIVAITSGG-------KL-LEMAREHGVPVIIIPKGL 100 (119)
T ss_pred CCCEEEEEECCCC-----CHHHHHHHHHHHHCCCEEEEEeCCc-------hH-HHHHHHcCCcEEECCCCC
Confidence 5789999998863 1236677888888775433333221 24 333334688888888755
No 181
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=27.43 E-value=1.8e+02 Score=28.17 Aligned_cols=67 Identities=12% Similarity=0.077 Sum_probs=37.1
Q ss_pred ccHHHHHHHHHHCCC-eeEEEEec-CCCCCcchHhHHHHHhhCCCCeEEEc---------chHHHHHHhcCCCCEEEEcc
Q 017293 187 GTALGVIRALHSEGV-LERAYCSE-TRPFNQGSRLTAFELVHDRIPATLIA---------DSAAAALMKDGRVSAVIVGA 255 (374)
Q Consensus 187 ~tv~~~l~~a~~~g~-~~~V~v~E-srP~~eG~~l~a~~L~~~GI~vtlI~---------Dsav~~~m~~~~vd~VlvGA 255 (374)
|+-+..|..+.+.|. +.+|.++= .+|...+ + ..+.|||+..++ |..+...+++.++|.+++..
T Consensus 100 gsnl~al~~~~~~~~~~~~i~~visn~~~~~~--l----A~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivlag 173 (286)
T PRK06027 100 DHCLGDLLWRWRSGELPVEIAAVISNHDDLRS--L----VERFGIPFHHVPVTKETKAEAEARLLELIDEYQPDLVVLAR 173 (286)
T ss_pred CCCHHHHHHHHHcCCCCcEEEEEEEcChhHHH--H----HHHhCCCEEEeccCccccchhHHHHHHHHHHhCCCEEEEec
Confidence 555555555555543 33433322 3443322 1 456799999875 22445566677899887764
Q ss_pred -eeee
Q 017293 256 -DRVA 259 (374)
Q Consensus 256 -d~i~ 259 (374)
-+|+
T Consensus 174 y~~il 178 (286)
T PRK06027 174 YMQIL 178 (286)
T ss_pred chhhc
Confidence 3444
No 182
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=27.38 E-value=6.7e+02 Score=25.44 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=27.0
Q ss_pred EEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCc
Q 017293 171 SVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQ 215 (374)
Q Consensus 171 ~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~e 215 (374)
.|..++--|...-.|++ -|.++.+.|.++.++|.++.++..
T Consensus 153 ~v~v~gGDG~~ydIG~~----~l~ha~~r~~ni~~iv~DNe~Y~n 193 (365)
T cd03377 153 SVWIIGGDGWAYDIGYG----GLDHVLASGENVNILVLDTEVYSN 193 (365)
T ss_pred ceEEEecchhhhccchh----hHHHHHHcCCCeEEEEECCccccc
Confidence 45555444554444444 345666779999999999998863
No 183
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=27.22 E-value=1.7e+02 Score=30.35 Aligned_cols=83 Identities=20% Similarity=0.164 Sum_probs=42.3
Q ss_pred EEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCC-CC-eEEEcchHHHHHHhcCCC
Q 017293 171 SVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDR-IP-ATLIADSAAAALMKDGRV 248 (374)
Q Consensus 171 ~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~G-I~-vtlI~Dsav~~~m~~~~v 248 (374)
.||..+. | -.+..+++.+++.|....++..+..+...+.++ |.+....| .+ -.|.....+-.+.++.++
T Consensus 4 kvLi~~~-g-------eia~~ii~a~~~~Gi~~v~v~~~~d~~a~~~~~-aD~~~~i~~~~~~~y~d~~~i~~~a~~~~~ 74 (472)
T PRK07178 4 KILIANR-G-------EIAVRIVRACAEMGIRSVAIYSEADRHALHVKR-ADEAYSIGADPLAGYLNPRRLVNLAVETGC 74 (472)
T ss_pred EEEEECC-c-------HHHHHHHHHHHHcCCeEEEEeCCCccCCccHhh-CCEEEEcCCCchhhhcCHHHHHHHHHHHCC
Confidence 4676643 3 246788999998886555544444333333322 11110001 01 112222344455556789
Q ss_pred CEEEEcceeeecCC
Q 017293 249 SAVIVGADRVAANG 262 (374)
Q Consensus 249 d~VlvGAd~i~~nG 262 (374)
|.|+-|..-..+|.
T Consensus 75 D~I~pg~g~lse~~ 88 (472)
T PRK07178 75 DALHPGYGFLSENA 88 (472)
T ss_pred CEEEeCCCCcccCH
Confidence 99988864444443
No 184
>PRK15005 universal stress protein F; Provisional
Probab=27.22 E-value=1e+02 Score=25.48 Aligned_cols=39 Identities=13% Similarity=0.208 Sum_probs=26.6
Q ss_pred hcCCCCEEEEcceeeecCCCeec-ccccHHHHHHHHhcCCeEEEe
Q 017293 244 KDGRVSAVIVGADRVAANGDTAN-KIGTYSLALCAKFHNILFYVA 287 (374)
Q Consensus 244 ~~~~vd~VlvGAd~i~~nG~v~n-kiGT~~lA~~Ak~~~vPvyV~ 287 (374)
.+.++|+|++|+++ .| +.. -.|+-.- -+.++-..||+|+
T Consensus 104 ~~~~~DLIV~Gs~~---~~-~~~~llGS~a~-~vl~~a~cpVlvV 143 (144)
T PRK15005 104 KKIPADMIIIASHR---PD-ITTYLLGSNAA-AVVRHAECSVLVV 143 (144)
T ss_pred HHcCCCEEEEeCCC---CC-chheeecchHH-HHHHhCCCCEEEe
Confidence 45799999999873 23 332 2476443 4577788999986
No 185
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=27.13 E-value=5.3e+02 Score=24.18 Aligned_cols=111 Identities=22% Similarity=0.143 Sum_probs=60.6
Q ss_pred HHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCC-eeEEE---Eec-CCCCCc--------chH
Q 017293 152 AIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGV-LERAY---CSE-TRPFNQ--------GSR 218 (374)
Q Consensus 152 ~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~-~~~V~---v~E-srP~~e--------G~~ 218 (374)
.++..+.+.|. +.+|+..+- |.| | -.+++.+...|. +++++ +.| |.-..| |..
T Consensus 21 ~~g~~~Q~~L~------~~~VliiG~-Ggl-----G--s~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~ 86 (245)
T PRK05690 21 GFDFDGQEKLK------AARVLVVGL-GGL-----G--CAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQP 86 (245)
T ss_pred hcCHHHHHHhc------CCeEEEECC-CHH-----H--HHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCCh
Confidence 35666677777 467777765 322 2 223444445565 44444 222 211111 211
Q ss_pred ---hHHHHHhhC--CCCeEEEc----chHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEe
Q 017293 219 ---LTAFELVHD--RIPATLIA----DSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (374)
Q Consensus 219 ---l~a~~L~~~--GI~vtlI~----Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~ 287 (374)
.+++.|.+. .+++..+. ......++ .++|.||...|... --+.+.-+|+.+++|++..
T Consensus 87 Ka~~a~~~l~~lnp~v~i~~~~~~i~~~~~~~~~--~~~DiVi~~~D~~~---------~r~~ln~~~~~~~ip~v~~ 153 (245)
T PRK05690 87 KVESARAALARINPHIAIETINARLDDDELAALI--AGHDLVLDCTDNVA---------TRNQLNRACFAAKKPLVSG 153 (245)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHH--hcCCEEEecCCCHH---------HHHHHHHHHHHhCCEEEEe
Confidence 124456544 35554443 22344566 78999988887441 2356777899999999874
No 186
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=26.96 E-value=1.4e+02 Score=29.26 Aligned_cols=92 Identities=12% Similarity=0.027 Sum_probs=59.3
Q ss_pred HHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCCCCEEEEcceeeecCCC--eec
Q 017293 189 ALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGD--TAN 266 (374)
Q Consensus 189 v~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~vd~VlvGAd~i~~nG~--v~n 266 (374)
+...+..|.+.|.+.-|+++|.=|...-.++ .+.+.+.| +.+|==+.-+.+. +..-++=+=...|+.-|. ++.
T Consensus 78 aadai~EAida~i~liv~ITEgIP~~D~~~~-~~~a~~~g--~~iiGPncpGiI~--Pg~~kiGimp~~i~~~G~IGiVS 152 (293)
T COG0074 78 AADAILEAIDAGIKLVVIITEGIPVLDMLEL-KRYAREKG--TRLIGPNCPGIIT--PGECKIGIMPGNIYKPGNIGIVS 152 (293)
T ss_pred HHHHHHHHHhCCCcEEEEEeCCCCHHHHHHH-HHHHHhcC--CEEECCCCCccCc--CCcceeeechhhhccCCceEEEe
Confidence 4556677888899999999999999876665 45677777 5666555556554 554332222266777776 588
Q ss_pred ccccHH--HHHHHHhcCCeEE
Q 017293 267 KIGTYS--LALCAKFHNILFY 285 (374)
Q Consensus 267 kiGT~~--lA~~Ak~~~vPvy 285 (374)
|.||+. ++--=.+.+.=++
T Consensus 153 rSGTLTyE~~~qlt~~G~GqS 173 (293)
T COG0074 153 RSGTLTYEAVSQLTEAGLGQS 173 (293)
T ss_pred cCcchHHHHHHHHHhcCCceE
Confidence 888754 4443333344433
No 187
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=26.94 E-value=2.2e+02 Score=27.13 Aligned_cols=61 Identities=15% Similarity=0.120 Sum_probs=38.1
Q ss_pred HHHhhCCCCeEEEcchHHHH----HHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccCc
Q 017293 222 FELVHDRIPATLIADSAAAA----LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLT 291 (374)
Q Consensus 222 ~~L~~~GI~vtlI~Dsav~~----~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~ 291 (374)
..|...|+++.+..|..... .+ .+=|.||+ +.-.|..- -+..++-.||.+|+|+++++...
T Consensus 160 ~~l~~~g~~~~~~~d~~~~~~~~~~~--~~~Dl~I~----iS~sG~t~---~~~~~~~~ak~~g~~ii~IT~~~ 224 (292)
T PRK11337 160 HKFLRIGVRCQAYDDAHIMLMSAALL--QEGDVVLV----VSHSGRTS---DVIEAVELAKKNGAKIICITNSY 224 (292)
T ss_pred HHHhhCCCeEEEcCCHHHHHHHHhcC--CCCCEEEE----EeCCCCCH---HHHHHHHHHHHCCCeEEEEeCCC
Confidence 34556677777776654332 23 45566654 33344332 26677889999999999987643
No 188
>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=26.92 E-value=7.2e+02 Score=25.69 Aligned_cols=107 Identities=19% Similarity=0.226 Sum_probs=62.8
Q ss_pred EEecCCCcccccccccHHHHHHHHHHCCC------eeEEEEecCCCCCcchHhHHHH---HhhCCCCe-------EEE--
Q 017293 173 LTHCNTGSLATAGYGTALGVIRALHSEGV------LERAYCSETRPFNQGSRLTAFE---LVHDRIPA-------TLI-- 234 (374)
Q Consensus 173 LT~~~sg~lat~g~~tv~~~l~~a~~~g~------~~~V~v~EsrP~~eG~~l~a~~---L~~~GI~v-------tlI-- 234 (374)
.=+||||+- ..+..|+.|.+... +.+++..|.. +.|..|-+-+ -+.+|++- ...
T Consensus 119 vff~nsGTe------Ane~ALK~Ark~~~~~~~~~~t~~Iaf~ns--yHG~tlgals~~~~s~y~~~~~p~~p~v~~~~y 190 (433)
T KOG1401|consen 119 VFFCNSGTE------ANETALKFARKFTGKKHPEKKTKFIAFENS--YHGRTLGALSVTGNSKYGLPFDPIAPDVVTAEY 190 (433)
T ss_pred EEEecCCcH------HHHHHHHHHHHhhcccCCccceeEEEEecC--cCCcchhHHHhhcccccCCCCCCCCCceeeccc
Confidence 357999742 23557777766332 2347777763 5576653322 12445532 111
Q ss_pred cch-HHHHHHhcC--CCCEEEEcceeeecCCCeecccccHHHHH--HHHhcCCeEE---Eecc
Q 017293 235 ADS-AAAALMKDG--RVSAVIVGADRVAANGDTANKIGTYSLAL--CAKFHNILFY---VAAP 289 (374)
Q Consensus 235 ~Ds-av~~~m~~~--~vd~VlvGAd~i~~nG~v~nkiGT~~lA~--~Ak~~~vPvy---V~a~ 289 (374)
.|+ ++--+++.+ +|-.|||-. |.-+|+++---=-.+..+ +|+.++|+|+ |.|.
T Consensus 191 nd~t~l~k~~~~h~~~IaAVIvEP--iqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG 251 (433)
T KOG1401|consen 191 NDSTALEKLFESHKGEIAAVIVEP--IQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTG 251 (433)
T ss_pred CCHHHHHHHHHhCCCceEEEEEec--ccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhC
Confidence 132 223334333 477888755 778888877666666665 8999999998 4554
No 189
>PRK08114 cystathionine beta-lyase; Provisional
Probab=26.85 E-value=2.7e+02 Score=28.28 Aligned_cols=85 Identities=11% Similarity=0.100 Sum_probs=45.4
Q ss_pred HHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEc--c-hHHHHHHhcCCCCEEEEcceeeecCCCeec
Q 017293 190 LGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIA--D-SAAAALMKDGRVSAVIVGADRVAANGDTAN 266 (374)
Q Consensus 190 ~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~--D-sav~~~m~~~~vd~VlvGAd~i~~nG~v~n 266 (374)
..++....+.|. +|++.. ..+..-.++..+.|.+.||+|+++. | ..+...++ ++. ++| =.+. +.|
T Consensus 91 ~~~~~~ll~~GD--~Vv~~~-~~Yg~t~~l~~~~l~~~Gi~v~~vd~~d~~~l~~~l~-~~T-rlV-~~Et------psN 158 (395)
T PRK08114 91 ANAILAFVEQGD--HVLMTG-TAYEPTQDFCSKILSKLGVTTTWFDPLIGADIAKLIQ-PNT-KVV-FLES------PGS 158 (395)
T ss_pred HHHHHHHcCCCC--EEEEeC-CCcHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcC-CCc-eEE-EEEC------CCC
Confidence 334555555554 566553 2333333443345788999999985 2 23444451 233 332 2222 334
Q ss_pred cccc----HHHHHHHHhcC--CeEEE
Q 017293 267 KIGT----YSLALCAKFHN--ILFYV 286 (374)
Q Consensus 267 kiGT----~~lA~~Ak~~~--vPvyV 286 (374)
..|. ..++-+||.+| ++++|
T Consensus 159 p~~~v~DI~~Ia~ia~~~g~g~~lvV 184 (395)
T PRK08114 159 ITMEVHDVPAIVAAVRSVNPDAVIMI 184 (395)
T ss_pred CCCEeecHHHHHHHHHHhCCCCEEEE
Confidence 4443 34677888875 87776
No 190
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=26.73 E-value=2e+02 Score=28.37 Aligned_cols=33 Identities=21% Similarity=0.034 Sum_probs=23.2
Q ss_pred EcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccCc
Q 017293 253 VGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLT 291 (374)
Q Consensus 253 vGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~ 291 (374)
.++|.|..|- -.+..+++|+.+|||++.++.+.
T Consensus 103 ~~pDlvi~d~------~~~~~~~~A~~~giP~v~~~~~~ 135 (401)
T cd03784 103 WGPDLVVADP------LAFAGAVAAEALGIPAVRLLLGP 135 (401)
T ss_pred cCCCEEEeCc------HHHHHHHHHHHhCCCeEEeeccc
Confidence 3556666553 33455788999999999887654
No 191
>PRK00884 Maf-like protein; Reviewed
Probab=26.68 E-value=3.9e+02 Score=24.44 Aligned_cols=41 Identities=22% Similarity=0.205 Sum_probs=31.9
Q ss_pred CCEEEEcceeee-cCCCeecccccHHHH--HHHHhcCCeEEEec
Q 017293 248 VSAVIVGADRVA-ANGDTANKIGTYSLA--LCAKFHNILFYVAA 288 (374)
Q Consensus 248 vd~VlvGAd~i~-~nG~v~nkiGT~~lA--~~Ak~~~vPvyV~a 288 (374)
-+.+++|||.|+ -||.++.|=.+..-| ++-+..|.+..|.+
T Consensus 61 ~~~~VI~aDTvV~~~g~ilgKP~~~eeA~~~L~~lsG~~h~V~T 104 (194)
T PRK00884 61 PDHLIIGSDQVCVLDGEITGKPLTEENARAQLRKASGNIVTFYT 104 (194)
T ss_pred CCCEEEEeCeEEEECCEEecCCCCHHHHHHHHHHHCCCceEEEE
Confidence 467999999977 488899999999877 46666777665543
No 192
>PRK04056 Maf-like protein; Reviewed
Probab=26.58 E-value=4.1e+02 Score=23.95 Aligned_cols=80 Identities=13% Similarity=0.044 Sum_probs=47.5
Q ss_pred CCCeeEEEEe---cCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCCCCEEEEcceeee-cCCCeecccccHHHH
Q 017293 199 EGVLERAYCS---ETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVA-ANGDTANKIGTYSLA 274 (374)
Q Consensus 199 ~g~~~~V~v~---EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~vd~VlvGAd~i~-~nG~v~nkiGT~~lA 274 (374)
.|.+|.|+.. |+.+..+.-.-.+..|+...- -.+.++..-+.+++|||.|. -||.++.|=.+..-|
T Consensus 18 ~g~~f~v~~~~idE~~~~~~~p~~~v~~lA~~Ka----------~~v~~~~~~~~~vI~aDTvV~~~g~ilgKP~~~~eA 87 (180)
T PRK04056 18 AGIEFEQKSLDFDEESIKKTSPKEFVYLAVKGKL----------EQFLKKYGNECNLLVADSVVSCGNKILRKAKDKEEA 87 (180)
T ss_pred CCCCeEEEcCCCCCCCCCCCCHHHHHHHHHHHHH----------HHHHHhCCCCCEEEEeCEEEEECCEEecCCCCHHHH
Confidence 3888988743 554433322222444543221 11221112246999999977 488899999998776
Q ss_pred --HHHHhcCCeEEEec
Q 017293 275 --LCAKFHNILFYVAA 288 (374)
Q Consensus 275 --~~Ak~~~vPvyV~a 288 (374)
++-...|.+..|.+
T Consensus 88 ~~~L~~lsg~~h~V~T 103 (180)
T PRK04056 88 REMLKLQSGNEISVLT 103 (180)
T ss_pred HHHHHHHCCCcEEEEE
Confidence 46666777766643
No 193
>PRK12342 hypothetical protein; Provisional
Probab=26.45 E-value=5.5e+02 Score=24.52 Aligned_cols=93 Identities=13% Similarity=-0.026 Sum_probs=54.7
Q ss_pred cEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchH--hHHHHHhhCCCCeEEEcchHHHHHHhcCC
Q 017293 170 FSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSR--LTAFELVHDRIPATLIADSAAAALMKDGR 247 (374)
Q Consensus 170 ~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~--l~a~~L~~~GI~vtlI~Dsav~~~m~~~~ 247 (374)
-+++|+++.. .....+++.|...|-.--|.+. .+ .+.|.. -|++-|+ ..+++..
T Consensus 54 Vtvls~Gp~~-------a~~~~l~r~alamGaD~avli~-d~-~~~g~D~~ata~~La---------------~~i~~~~ 109 (254)
T PRK12342 54 IAALTVGGSL-------LQNSKVRKDVLSRGPHSLYLVQ-DA-QLEHALPLDTAKALA---------------AAIEKIG 109 (254)
T ss_pred EEEEEeCCCh-------HhHHHHHHHHHHcCCCEEEEEe-cC-ccCCCCHHHHHHHHH---------------HHHHHhC
Confidence 6678888741 0122355778888876555554 33 222332 2344333 3444456
Q ss_pred CCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccCccc
Q 017293 248 VSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSI 293 (374)
Q Consensus 248 vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~K~ 293 (374)
+|.||.|-.++-.+.+ ..=+++|...|.|++-.+...++
T Consensus 110 ~DLVl~G~~s~D~~tg-------qvg~~lA~~Lg~P~vt~v~~~~~ 148 (254)
T PRK12342 110 FDLLLFGEGSGDLYAQ-------QVGLLLGELLQLPVINAVSKIQR 148 (254)
T ss_pred CCEEEEcCCcccCCCC-------CHHHHHHHHhCCCcEeeEEEEEE
Confidence 9999999777643222 12247899999999866554444
No 194
>PLN02409 serine--glyoxylate aminotransaminase
Probab=26.27 E-value=6.6e+02 Score=25.06 Aligned_cols=86 Identities=13% Similarity=0.115 Sum_probs=44.5
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcch--------HHHHHHhc---CCCCEEEEcceeeec
Q 017293 192 VIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADS--------AAAALMKD---GRVSAVIVGADRVAA 260 (374)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Ds--------av~~~m~~---~~vd~VlvGAd~i~~ 260 (374)
.+....+.| -+|++.+ |..-+.+. ...+...|+++..++.. .+...+.. +++..|++ .+.=..
T Consensus 76 a~~~~~~~G--d~Vlv~~--~~~~~~~~-~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~l~~~~~~~~k~v~~-~~~~~~ 149 (401)
T PLN02409 76 ALTNTLSPG--DKVVSFR--IGQFSLLW-IDQMQRLNFDVDVVESPWGQGADLDILKSKLRQDTNHKIKAVCV-VHNETS 149 (401)
T ss_pred HHHhcCCCC--CEEEEeC--CCchhHHH-HHHHHHcCCceEEEECCCCCCCCHHHHHHHHhhCcCCCccEEEE-Eeeccc
Confidence 333334434 3577766 33334433 33456678888877521 23334432 24555554 333334
Q ss_pred CCCeecccccHHHHHH--HHhcCCeEEE
Q 017293 261 NGDTANKIGTYSLALC--AKFHNILFYV 286 (374)
Q Consensus 261 nG~v~nkiGT~~lA~~--Ak~~~vPvyV 286 (374)
.|.+ +. --.++-+ |+.+|++++|
T Consensus 150 tG~~-~~--~~~i~~l~~~~~~g~~~vv 174 (401)
T PLN02409 150 TGVT-ND--LAGVRKLLDCAQHPALLLV 174 (401)
T ss_pred cccc-CC--HHHHHHHHhhhccCcEEEE
Confidence 4533 33 2334555 8889988876
No 195
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=26.26 E-value=1.4e+02 Score=29.03 Aligned_cols=96 Identities=11% Similarity=-0.009 Sum_probs=65.8
Q ss_pred cccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhH---HHHH-hhCCCCeEEEcchHH--HHHHhcCCCCEEEEcceeee
Q 017293 186 YGTALGVIRALHSEGVLERAYCSETRPFNQGSRLT---AFEL-VHDRIPATLIADSAA--AALMKDGRVSAVIVGADRVA 259 (374)
Q Consensus 186 ~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~---a~~L-~~~GI~vtlI~Dsav--~~~m~~~~vd~VlvGAd~i~ 259 (374)
+-++.++++.|.+.+..+-+=+.++.=.+.|.+.. ++.+ .+..|||.+-.|.+- -.++ .-++ .|-.+|+
T Consensus 28 ~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~~VPV~lHLDHg~~~e~i~--~Ai~---~GftSVM 102 (284)
T PRK09195 28 LETMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQYHHPLALHLDHHEKFDDIA--QKVR---SGVRSVM 102 (284)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHH--HHHH---cCCCEEE
Confidence 45788899999887766554444433223343332 2223 357899999999873 3344 3333 4889999
Q ss_pred cCCCee----cccccHHHHHHHHhcCCeEEE
Q 017293 260 ANGDTA----NKIGTYSLALCAKFHNILFYV 286 (374)
Q Consensus 260 ~nG~v~----nkiGT~~lA~~Ak~~~vPvyV 286 (374)
-||+-. |-.=|..++-.|+.+|++|=.
T Consensus 103 ~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VEa 133 (284)
T PRK09195 103 IDGSHLPFAQNISLVKEVVDFCHRFDVSVEA 133 (284)
T ss_pred eCCCCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 999975 777889999999999998754
No 196
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=26.20 E-value=6.2e+02 Score=25.62 Aligned_cols=91 Identities=22% Similarity=0.172 Sum_probs=47.9
Q ss_pred cHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcch---HHHHHHhcCCCCEEEEcceeeecCCCe
Q 017293 188 TALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADS---AAAALMKDGRVSAVIVGADRVAANGDT 264 (374)
Q Consensus 188 tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Ds---av~~~m~~~~vd~VlvGAd~i~~nG~v 264 (374)
.+...+....+.|. +|++.. ..+..-.++..+.|...||.++++... .+...+ ++++..|++ +... |= .
T Consensus 82 Ai~~~l~~ll~~Gd--~iv~~~-~~Y~~t~~~~~~~l~~~gv~v~~~d~~d~~~l~~~l-~~~t~~v~~--Esps-NP-~ 153 (386)
T PF01053_consen 82 AISAALLALLKPGD--HIVASD-DLYGGTYRLLEELLPRFGVEVTFVDPTDLEALEAAL-RPNTKLVFL--ESPS-NP-T 153 (386)
T ss_dssp HHHHHHHHHS-TTB--EEEEES-SSSHHHHHHHHHCHHHTTSEEEEESTTSHHHHHHHH-CTTEEEEEE--ESSB-TT-T
T ss_pred HHHHHHHhhcccCC--ceEecC-CccCcchhhhhhhhcccCcEEEEeCchhHHHHHhhc-cccceEEEE--EcCC-Cc-c
Confidence 33345555555564 444433 334434445444588899999998553 444445 235555543 3332 21 1
Q ss_pred ecccccHHHHHHHHhcC-CeEEE
Q 017293 265 ANKIGTYSLALCAKFHN-ILFYV 286 (374)
Q Consensus 265 ~nkiGT~~lA~~Ak~~~-vPvyV 286 (374)
..-.=-..++-+||.+| +|++|
T Consensus 154 l~v~Dl~~i~~~a~~~g~~~~vV 176 (386)
T PF01053_consen 154 LEVPDLEAIAKLAKEHGDILVVV 176 (386)
T ss_dssp TB---HHHHHHHHHHTTT-EEEE
T ss_pred cccccHHHHHHHHHHhCCceEEe
Confidence 22222345777899999 88887
No 197
>PRK00148 Maf-like protein; Reviewed
Probab=26.05 E-value=3.7e+02 Score=24.53 Aligned_cols=41 Identities=20% Similarity=0.112 Sum_probs=31.6
Q ss_pred CCEEEEcceeeec-CCCeecccccHHHH--HHHHhcCCeEEEec
Q 017293 248 VSAVIVGADRVAA-NGDTANKIGTYSLA--LCAKFHNILFYVAA 288 (374)
Q Consensus 248 vd~VlvGAd~i~~-nG~v~nkiGT~~lA--~~Ak~~~vPvyV~a 288 (374)
-+.+++|||.|.. ||-++.|=.+..=| ++-+..|.+..|.+
T Consensus 60 ~~~~vI~aDTvV~~~g~Il~KP~~~eeA~~~L~~lsG~~h~v~T 103 (194)
T PRK00148 60 PDAVVLGCDSMLLIDGRLLGKPHTPEEAIERWQQMSGRTGELYT 103 (194)
T ss_pred CCCEEEEeCcEEEECCEEecCCCCHHHHHHHHHHhCCCCcEEEE
Confidence 4679999999775 99999999998877 46666677655543
No 198
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=25.87 E-value=1.8e+02 Score=25.44 Aligned_cols=58 Identities=12% Similarity=0.087 Sum_probs=35.6
Q ss_pred HHhhCCCCeEEEcchHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccC
Q 017293 223 ELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPL 290 (374)
Q Consensus 223 ~L~~~GI~vtlI~Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~ 290 (374)
.|...|+++.++.|... ..+ .+=|.+|+-. -.| +.--+..++-.||++|+|+++++..
T Consensus 51 ~l~~~g~~~~~~~~~~~-~~~--~~~Dv~I~iS----~sG---~t~~~i~~~~~ak~~g~~ii~IT~~ 108 (179)
T TIGR03127 51 RLMHLGFNVYVVGETTT-PSI--KKGDLLIAIS----GSG---ETESLVTVAKKAKEIGATVAAITTN 108 (179)
T ss_pred HHHhCCCeEEEeCCccc-CCC--CCCCEEEEEe----CCC---CcHHHHHHHHHHHHCCCeEEEEECC
Confidence 45566777777776432 223 4445555422 233 2333566777899999999998764
No 199
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=25.80 E-value=7.6e+02 Score=25.59 Aligned_cols=80 Identities=9% Similarity=-0.003 Sum_probs=47.2
Q ss_pred eEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHh-----cCCCCEEEEcceeeecCCCeecccccHHHHHHH
Q 017293 203 ERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMK-----DGRVSAVIVGADRVAANGDTANKIGTYSLALCA 277 (374)
Q Consensus 203 ~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~-----~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~A 277 (374)
.+|+-+.+.=.+.+. ....|.+.|..||++|-.--+.... .-+-+-.+++.+.|..-=++++.+ --+..+|
T Consensus 132 k~iitl~~eH~~v~~--s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~gv~~Pv--~EI~~ic 207 (428)
T KOG1549|consen 132 KHIITLQTEHPCVLD--SCRALQEEGLEVTYLPVEDSGLVDISKLREAIRSKTRLVSIMHVNNEIGVLQPV--KEIVKIC 207 (428)
T ss_pred ceEEEecccCcchhH--HHHHHHhcCeEEEEeccCccccccHHHHHHhcCCCceEEEEEecccCccccccH--HHHHHHh
Confidence 366666654333333 3556899999999998542222110 012355666666665443344433 3467789
Q ss_pred HhcCCeEEE
Q 017293 278 KFHNILFYV 286 (374)
Q Consensus 278 k~~~vPvyV 286 (374)
+..||.|.+
T Consensus 208 r~~~v~v~~ 216 (428)
T KOG1549|consen 208 REEGVQVHV 216 (428)
T ss_pred CcCCcEEEe
Confidence 999997766
No 200
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=25.75 E-value=5.2e+02 Score=26.46 Aligned_cols=88 Identities=23% Similarity=0.241 Sum_probs=48.4
Q ss_pred HHHHHHHHHCCCeeEEEEecCCCCCcchH-hHHHHHhhCCCCeEEEcch---HHHHHHhcCCCCEEEEcceee-ecCCCe
Q 017293 190 LGVIRALHSEGVLERAYCSETRPFNQGSR-LTAFELVHDRIPATLIADS---AAAALMKDGRVSAVIVGADRV-AANGDT 264 (374)
Q Consensus 190 ~~~l~~a~~~g~~~~V~v~EsrP~~eG~~-l~a~~L~~~GI~vtlI~Ds---av~~~m~~~~vd~VlvGAd~i-~~nG~v 264 (374)
...+....+.|. +|++.+ |.+.|.. +....+...|+++..++-. .+-..+. +++..|++- .. -+.|.+
T Consensus 93 ~~al~~ll~~GD--~Vlv~~--~~y~~t~~~~~~~~~~~Gv~v~~vd~~d~e~l~~ai~-~~tklV~l~--sp~NPtG~v 165 (431)
T PRK08248 93 TYSILNIASAGD--EIVSSS--SLYGGTYNLFAHTLPKLGITVKFVDPSDPENFEAAIT-DKTKALFAE--TIGNPKGDV 165 (431)
T ss_pred HHHHHHHhCCCC--EEEEcc--CchhhHHHHHHHHHHhCCEEEEEECCCCHHHHHHhcC-CCCeEEEEE--CCCCCCCcc
Confidence 334444444444 566654 5554432 2334467789999888632 2333342 356666552 22 123444
Q ss_pred ecccccHHHHHHHHhcCCeEEEe
Q 017293 265 ANKIGTYSLALCAKFHNILFYVA 287 (374)
Q Consensus 265 ~nkiGT~~lA~~Ak~~~vPvyV~ 287 (374)
.. + -.++-+||.++++++|=
T Consensus 166 ~d-i--~~I~~la~~~gi~vIvD 185 (431)
T PRK08248 166 LD-I--EAVAAIAHEHGIPLIVD 185 (431)
T ss_pred cC-H--HHHHHHHHHcCCEEEEe
Confidence 33 2 36777899999998763
No 201
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=25.69 E-value=6.7e+02 Score=24.90 Aligned_cols=78 Identities=13% Similarity=0.074 Sum_probs=39.0
Q ss_pred eeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcch--------HHHHHHhcCCCCEEEEcceeeecCCCeecccccHHH
Q 017293 202 LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADS--------AAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSL 273 (374)
Q Consensus 202 ~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Ds--------av~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~l 273 (374)
.-+|++.. +.+.........+...|+++..++.. .+...+ +++...|++ ...=...| .++.+ ..+
T Consensus 92 g~~Vi~~~--~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l-~~~~~lv~v-~~~~n~tG-~~~~~--~~I 164 (402)
T TIGR02006 92 GNHIITSK--TEHKAVLDTCRYLEREGFEVTYLPPKSNGLIDLEELKAAI-RDDTILVSI-MHVNNEIG-VIQDI--AAI 164 (402)
T ss_pred CCEEEECC--CccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhc-CCCCEEEEE-ECCCcCce-ecccH--HHH
Confidence 34566654 33433222233456679998888532 122223 123333332 11111123 33332 358
Q ss_pred HHHHHhcCCeEEE
Q 017293 274 ALCAKFHNILFYV 286 (374)
Q Consensus 274 A~~Ak~~~vPvyV 286 (374)
+-+|+.+|++++|
T Consensus 165 ~~l~~~~g~~liv 177 (402)
T TIGR02006 165 GEICRERKVFFHV 177 (402)
T ss_pred HHHHHHcCCEEEE
Confidence 8899999999886
No 202
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=25.55 E-value=88 Score=34.24 Aligned_cols=47 Identities=9% Similarity=0.080 Sum_probs=27.9
Q ss_pred ccHHHHHHHHHHCCCeeEEEEecCCCCCcchHh-HHHHHhhCCCCeEE
Q 017293 187 GTALGVIRALHSEGVLERAYCSETRPFNQGSRL-TAFELVHDRIPATL 233 (374)
Q Consensus 187 ~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l-~a~~L~~~GI~vtl 233 (374)
|.+...|..|.++|++.+|+|-=-.=..|+..+ .++.|.++|+.|.+
T Consensus 371 s~ii~aL~~Aa~~Gk~V~v~veLkArfde~~ni~wa~~le~aG~~viy 418 (672)
T TIGR03705 371 SPIIDALIEAAENGKEVTVVVELKARFDEEANIRWARRLEEAGVHVVY 418 (672)
T ss_pred cHHHHHHHHHHHcCCEEEEEEEehhhccchhhHHHHHHHHHcCCEEEE
Confidence 456666777777788888877611111122221 24567888888777
No 203
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=25.49 E-value=5.5e+02 Score=25.14 Aligned_cols=65 Identities=15% Similarity=0.190 Sum_probs=40.4
Q ss_pred eeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCCCCEEEEcc---ee-----eecCCCeecccccHH
Q 017293 202 LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGA---DR-----VAANGDTANKIGTYS 272 (374)
Q Consensus 202 ~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~vd~VlvGA---d~-----i~~nG~v~nkiGT~~ 272 (374)
.-+|+|..-.|.. .+.++.++.+.|+++....|.. .++ .++|.|+... +- .+..|..+|-+|++.
T Consensus 153 ~~~v~V~~r~~~~--~~~~~~~~~~~g~~v~~~~~~~--eav--~~aDiVitaT~s~~P~~~~~~l~~g~~v~~vGs~~ 225 (325)
T TIGR02371 153 LEEVSVYCRTPST--REKFALRASDYEVPVRAATDPR--EAV--EGCDILVTTTPSRKPVVKADWVSEGTHINAIGADA 225 (325)
T ss_pred CCEEEEECCCHHH--HHHHHHHHHhhCCcEEEeCCHH--HHh--ccCCEEEEecCCCCcEecHHHcCCCCEEEecCCCC
Confidence 3455555433322 2223556777888887766543 455 7999998755 33 235788888899753
No 204
>PRK09028 cystathionine beta-lyase; Provisional
Probab=25.43 E-value=7.2e+02 Score=25.17 Aligned_cols=82 Identities=12% Similarity=0.080 Sum_probs=46.1
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcch-HhHHHHHhhCCCCeEEEc--c-hHHHHHHhcCCCCEEEEcceeeecCCCeecc
Q 017293 192 VIRALHSEGVLERAYCSETRPFNQGS-RLTAFELVHDRIPATLIA--D-SAAAALMKDGRVSAVIVGADRVAANGDTANK 267 (374)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~eG~-~l~a~~L~~~GI~vtlI~--D-sav~~~m~~~~vd~VlvGAd~i~~nG~v~nk 267 (374)
++....+.|. +|++. +|.+.+. ++....|...|+++.++. | ..+...+ +++...|++ + +.-|.
T Consensus 92 ~l~all~~GD--~Vvv~--~~~Y~~t~~l~~~~l~~~Gi~v~~v~~~~~e~l~~~l-~~~TklV~l--e------spsNP 158 (394)
T PRK09028 92 ALLSFLKAGD--HLLMV--DSCYEPTRDLCDKILKGFGIETTYYDPMIGEGIRELI-RPNTKVLFL--E------SPGSI 158 (394)
T ss_pred HHHHHhCCCC--EEEEE--CCCcHHHHHHHHHhhhhcceEEEEECCCCHHHHHHhc-CcCceEEEE--E------CCCCC
Confidence 4444455554 56665 3455443 333335677899998874 2 3344444 244554543 1 23344
Q ss_pred ccc----HHHHHHHHhcCCeEEE
Q 017293 268 IGT----YSLALCAKFHNILFYV 286 (374)
Q Consensus 268 iGT----~~lA~~Ak~~~vPvyV 286 (374)
.|. -.++-+||.+|++++|
T Consensus 159 tg~v~dl~~I~~la~~~g~~lvv 181 (394)
T PRK09028 159 TMEVQDVPTLSRIAHEHDIVVML 181 (394)
T ss_pred CCcHHHHHHHHHHHHHcCCEEEE
Confidence 453 4566778999988876
No 205
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=25.43 E-value=1.9e+02 Score=26.90 Aligned_cols=26 Identities=19% Similarity=0.108 Sum_probs=20.3
Q ss_pred ecccccHHHHHHHHhcCCeEEEeccC
Q 017293 265 ANKIGTYSLALCAKFHNILFYVAAPL 290 (374)
Q Consensus 265 ~nkiGT~~lA~~Ak~~~vPvyV~a~~ 290 (374)
.|-.|+..++-+|+..++.|+.+...
T Consensus 76 ~n~~~~~~l~~~~~~~~~~~v~~Ss~ 101 (287)
T TIGR01214 76 VNALAPQNLARAAARHGARLVHISTD 101 (287)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEeee
Confidence 46678999998999888887766543
No 206
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=25.41 E-value=2e+02 Score=23.75 Aligned_cols=40 Identities=15% Similarity=0.116 Sum_probs=26.0
Q ss_pred hHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEe
Q 017293 237 SAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (374)
Q Consensus 237 sav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~ 287 (374)
+.+.-.+ .++|.|++|-..=+.=+ ++--.+..+||||-|.
T Consensus 40 ~e~~~~~--~~~DvvLlGPQv~y~~~---------~~~~~~~~~giPV~vI 79 (102)
T COG1440 40 TELSEYI--DNADVVLLGPQVRYMLK---------QLKEAAEEKGIPVEVI 79 (102)
T ss_pred hHHHHhh--hcCCEEEEChHHHHHHH---------HHHHHhcccCCCeEEe
Confidence 3344556 78999999986543221 3344566788999886
No 207
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=25.39 E-value=21 Score=34.01 Aligned_cols=68 Identities=22% Similarity=0.258 Sum_probs=32.9
Q ss_pred cchHhHHHHHhhCCCCeEEEc----chHHH---HHHhcCCCCEEEEcceeeec-CCCeecccccHHHHHHHHhcCCeEEE
Q 017293 215 QGSRLTAFELVHDRIPATLIA----DSAAA---ALMKDGRVSAVIVGADRVAA-NGDTANKIGTYSLALCAKFHNILFYV 286 (374)
Q Consensus 215 eG~~l~a~~L~~~GI~vtlI~----Dsav~---~~m~~~~vd~VlvGAd~i~~-nG~v~nkiGT~~lA~~Ak~~~vPvyV 286 (374)
.|.++ ...|.+.|+++..+. +.... .+. ..+. -.++|.|.. -|+.+|.+.=| +|.+.++||+.
T Consensus 34 ~g~~v-~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~--~~~~--~~~~d~ii~vGgG~i~D~~K~----~A~~~~~p~is 104 (250)
T PF13685_consen 34 AGEKV-EESLKSAGIEVAVIEEFVGDADEDEVEKLV--EALR--PKDADLIIGVGGGTIIDIAKY----AAFELGIPFIS 104 (250)
T ss_dssp HHHHH-HHHHHTTT-EEEEEE-EE---BHHHHHHHH--TTS----TT--EEEEEESHHHHHHHHH----HHHHHT--EEE
T ss_pred HHHHH-HHHHHHcCCeEEEEecCCCCCCHHHHHHHH--HHhc--ccCCCEEEEeCCcHHHHHHHH----HHHhcCCCEEE
Confidence 35554 446778888887553 22222 222 1110 023344443 55677776654 58888999998
Q ss_pred eccCc
Q 017293 287 AAPLT 291 (374)
Q Consensus 287 ~a~~~ 291 (374)
+...-
T Consensus 105 VPTa~ 109 (250)
T PF13685_consen 105 VPTAA 109 (250)
T ss_dssp EES--
T ss_pred ecccc
Confidence 85443
No 208
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=25.38 E-value=6.8e+02 Score=24.87 Aligned_cols=88 Identities=17% Similarity=0.127 Sum_probs=44.4
Q ss_pred HHHHHHHHHCCCeeEEEEecCCCCCcch-HhHHHHHhhCCCCeEEEcchHHHHHHh--cCCCCEEEEcceeee-cCCCee
Q 017293 190 LGVIRALHSEGVLERAYCSETRPFNQGS-RLTAFELVHDRIPATLIADSAAAALMK--DGRVSAVIVGADRVA-ANGDTA 265 (374)
Q Consensus 190 ~~~l~~a~~~g~~~~V~v~EsrP~~eG~-~l~a~~L~~~GI~vtlI~Dsav~~~m~--~~~vd~VlvGAd~i~-~nG~v~ 265 (374)
..++....+.|. +|++. +|.+.+. .+....+...|++++.++..-...+-+ +++...|++- ... +.|.+.
T Consensus 83 ~~al~al~~~Gd--~Vl~~--~~~~~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~le--~p~np~g~~~ 156 (380)
T TIGR01325 83 QAALMTLLQAGD--HVVAS--RSLFGSTVGFISEILPRFGIEVSFVDPTDLNAWEAAVKPNTKLVFVE--TPSNPLGELV 156 (380)
T ss_pred HHHHHHHhCCCC--EEEEe--cCCcchHHHHHHHHHHHhCCEEEEECCCCHHHHHHhcCCCceEEEEE--CCCCCCCeee
Confidence 344544444554 45553 4544332 222334667899998886432222221 2344444431 121 123222
Q ss_pred cccccHHHHHHHHhcCCeEEE
Q 017293 266 NKIGTYSLALCAKFHNILFYV 286 (374)
Q Consensus 266 nkiGT~~lA~~Ak~~~vPvyV 286 (374)
. --.++-+||.+|++++|
T Consensus 157 d---l~~I~~la~~~gi~liv 174 (380)
T TIGR01325 157 D---IAALAELAHAIGALLVV 174 (380)
T ss_pred C---HHHHHHHHHHcCCEEEE
Confidence 1 24566778999999886
No 209
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=25.26 E-value=5.6e+02 Score=25.93 Aligned_cols=89 Identities=17% Similarity=0.164 Sum_probs=47.7
Q ss_pred HHHHHHHHHHCCCeeEEEEecCCCCCcch-HhHHHHHhhCCCCeEEEcc---hHHHHHHhcCCCCEEEEcceeee-cCCC
Q 017293 189 ALGVIRALHSEGVLERAYCSETRPFNQGS-RLTAFELVHDRIPATLIAD---SAAAALMKDGRVSAVIVGADRVA-ANGD 263 (374)
Q Consensus 189 v~~~l~~a~~~g~~~~V~v~EsrP~~eG~-~l~a~~L~~~GI~vtlI~D---sav~~~m~~~~vd~VlvGAd~i~-~nG~ 263 (374)
+...+..+.+.|. +|++. .|.+.|. .+....+...|++++.++. ..+-..+ .++...|++ +... +.|.
T Consensus 85 i~~al~~l~~~Gd--~Vl~~--~~~y~~t~~~~~~~~~~~G~~v~~v~~~d~~~l~~~l-~~~t~~V~l--e~p~NPtg~ 157 (418)
T TIGR01326 85 ITYAILNLAQAGD--NIVSS--SYLYGGTYNLFKHTLKRLGIEVRFVDPDDPEEFEKAI-DENTKAVFA--ETIGNPAIN 157 (418)
T ss_pred HHHHHHHHhCCCC--EEEEE--CCCcHHHHHHHHHHHHHcCcEEEEECCCCHHHHHHhc-CcCCeEEEE--ECCCCCCCe
Confidence 3445555555554 55554 3555443 2223345678999888763 2233333 245556654 2322 1232
Q ss_pred eecccccHHHHHHHHhcCCeEEEe
Q 017293 264 TANKIGTYSLALCAKFHNILFYVA 287 (374)
Q Consensus 264 v~nkiGT~~lA~~Ak~~~vPvyV~ 287 (374)
+.. --.++-+|+.++++++|=
T Consensus 158 v~d---l~~I~~la~~~~i~livD 178 (418)
T TIGR01326 158 VPD---IEAIAEVAHAHGVPLIVD 178 (418)
T ss_pred ecC---HHHHHHHHHHcCCEEEEE
Confidence 222 245677899999998873
No 210
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=25.13 E-value=3.6e+02 Score=25.15 Aligned_cols=97 Identities=15% Similarity=0.130 Sum_probs=48.2
Q ss_pred HHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhh-CCCCeEE---EcchHHHHHHhcCCCCEEEEcceeeecCCC---
Q 017293 191 GVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVH-DRIPATL---IADSAAAALMKDGRVSAVIVGADRVAANGD--- 263 (374)
Q Consensus 191 ~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~-~GI~vtl---I~Dsav~~~m~~~~vd~VlvGAd~i~~nG~--- 263 (374)
.+++.+.++|...+|++....+......... .+.. .++.+.. -....+..+++..++|.||-.|-....+-.
T Consensus 14 ~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~ 92 (317)
T TIGR01181 14 NFVRYILNEHPDAEVIVLDKLTYAGNLENLA-DLEDNPRYRFVKGDIGDRELVSRLFTEHQPDAVVHFAAESHVDRSISG 92 (317)
T ss_pred HHHHHHHHhCCCCEEEEecCCCcchhhhhhh-hhccCCCcEEEEcCCcCHHHHHHHHhhcCCCEEEEcccccCchhhhhC
Confidence 3556665556556777765322111111111 2221 2333321 122345556633348988877743321111
Q ss_pred -----eecccccHHHHHHHHhc--CCeEEEec
Q 017293 264 -----TANKIGTYSLALCAKFH--NILFYVAA 288 (374)
Q Consensus 264 -----v~nkiGT~~lA~~Ak~~--~vPvyV~a 288 (374)
-.|..|+..++-+|+.+ +++++.+.
T Consensus 93 ~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~S 124 (317)
T TIGR01181 93 PAAFIETNVVGTYTLLEAVRKYWHEFRFHHIS 124 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCceEEEee
Confidence 24778898898888875 44555443
No 211
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=25.07 E-value=1e+02 Score=28.41 Aligned_cols=22 Identities=27% Similarity=0.166 Sum_probs=17.1
Q ss_pred HHHHHHHHHCCCeeEEEEecCC
Q 017293 190 LGVIRALHSEGVLERAYCSETR 211 (374)
Q Consensus 190 ~~~l~~a~~~g~~~~V~v~Esr 211 (374)
..+++.+.+.|...+|+++++.
T Consensus 23 ~~lir~L~k~G~~V~vv~T~aA 44 (196)
T PRK08305 23 MPEIEKLVDEGAEVTPIVSYTV 44 (196)
T ss_pred HHHHHHHHhCcCEEEEEECHhH
Confidence 4567788888888899988764
No 212
>PRK14368 Maf-like protein; Provisional
Probab=25.05 E-value=4e+02 Score=24.34 Aligned_cols=78 Identities=17% Similarity=0.142 Sum_probs=46.5
Q ss_pred CCCeeEEEEe---cCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCCCCEEEEcceeeec-CCCeecccccHHHH
Q 017293 199 EGVLERAYCS---ETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAA-NGDTANKIGTYSLA 274 (374)
Q Consensus 199 ~g~~~~V~v~---EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~vd~VlvGAd~i~~-nG~v~nkiGT~~lA 274 (374)
.|..|.|+.. |+.+..+.-.-.+..|+... +-.+.+ ..-+.+++|||.|+. ||.++.|=.+..=|
T Consensus 23 ~g~~f~v~~~~iDE~~~~~~~p~~~v~~lA~~K----------A~~v~~-~~~~~~vI~aDTvV~~~g~ilgKP~~~~eA 91 (193)
T PRK14368 23 AGIEFDVVPADIPEEPLPGEEPVDHVLRLAREK----------ARAAAA-LAEGRFFIGADTIVVCDGEIMGKPKDEADA 91 (193)
T ss_pred CCCCeEEEcCCCCCCCCCCCCHHHHHHHHHHHH----------HHHHHH-hCCCCEEEEeCcEEEECCEEecCCCCHHHH
Confidence 4888988743 55443332222244444321 111221 234789999999774 88899999998877
Q ss_pred H--HHHhcCCeEEEe
Q 017293 275 L--CAKFHNILFYVA 287 (374)
Q Consensus 275 ~--~Ak~~~vPvyV~ 287 (374)
. +-...|.+..|.
T Consensus 92 ~~~L~~lsG~~h~v~ 106 (193)
T PRK14368 92 VRMLKKLSGVPHEVI 106 (193)
T ss_pred HHHHHHhCCCCcEEE
Confidence 4 555666655554
No 213
>PRK14362 Maf-like protein; Provisional
Probab=25.01 E-value=4.1e+02 Score=24.57 Aligned_cols=41 Identities=17% Similarity=0.196 Sum_probs=31.6
Q ss_pred CCEEEEcceeee-cCCCeecccccHHHH--HHHHhcCCeEEEec
Q 017293 248 VSAVIVGADRVA-ANGDTANKIGTYSLA--LCAKFHNILFYVAA 288 (374)
Q Consensus 248 vd~VlvGAd~i~-~nG~v~nkiGT~~lA--~~Ak~~~vPvyV~a 288 (374)
-+.+++|||.|+ -||.++.|=.+..-| ++-+..|.+..|.+
T Consensus 72 ~~~~VI~ADTvV~~~g~ilgKP~~~eeA~~~L~~lsG~~H~V~T 115 (207)
T PRK14362 72 AGRLVIAADTVVALDGMILGKPADRADALSMLRRLAGRTHEVVS 115 (207)
T ss_pred CCCEEEEeCeEEEeCCEEcCCCCCHHHHHHHHHHhCCCceEEEE
Confidence 467999999977 488899999998877 46666777665543
No 214
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=24.82 E-value=3.1e+02 Score=25.80 Aligned_cols=61 Identities=15% Similarity=0.048 Sum_probs=36.9
Q ss_pred HHHHhhCCCCeEEEcchHHH----HHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccC
Q 017293 221 AFELVHDRIPATLIADSAAA----ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPL 290 (374)
Q Consensus 221 a~~L~~~GI~vtlI~Dsav~----~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~ 290 (374)
++.|...|+++....|.... ..| ++=|.+|+ +.-.|..- -+..++-.||.+|+|+++++..
T Consensus 147 ~~~l~~~g~~~~~~~d~~~~~~~~~~~--~~~Dv~I~----iS~sg~~~---~~~~~~~~ak~~ga~iI~IT~~ 211 (278)
T PRK11557 147 AWKLMKIGINAVAERDMHALLATVQAL--SPDDLLLA----ISYSGERR---ELNLAADEALRVGAKVLAITGF 211 (278)
T ss_pred HHHHhhCCCeEEEcCChHHHHHHHHhC--CCCCEEEE----EcCCCCCH---HHHHHHHHHHHcCCCEEEEcCC
Confidence 34456667777666664322 234 55565553 33345322 2456778999999999998764
No 215
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=24.81 E-value=1.4e+02 Score=28.97 Aligned_cols=96 Identities=15% Similarity=0.072 Sum_probs=66.5
Q ss_pred cccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHH---HHH-hhCCCCeEEEcchHHH--HHHhcCCCCEEEEcceeee
Q 017293 186 YGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTA---FEL-VHDRIPATLIADSAAA--ALMKDGRVSAVIVGADRVA 259 (374)
Q Consensus 186 ~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a---~~L-~~~GI~vtlI~Dsav~--~~m~~~~vd~VlvGAd~i~ 259 (374)
+-++.++++.|.+.+..+-+=+.++.=.+.|....+ +.+ .+.++||.+-.|.+-. .++ .-++ .|-.+|.
T Consensus 28 ~e~~~avi~AAee~~sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~~~VPValHLDH~~~~e~i~--~ai~---~GftSVM 102 (284)
T PRK12857 28 MEIVQAIVAAAEAEKSPVIIQASQGAIKYAGIEYISAMVRTAAEKASVPVALHLDHGTDFEQVM--KCIR---NGFTSVM 102 (284)
T ss_pred HHHHHHHHHHHHHhCCCEEEEechhHhhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHH--HHHH---cCCCeEE
Confidence 467888999998877665554544332233544322 222 3678999999998753 344 3444 4999999
Q ss_pred cCCCee----cccccHHHHHHHHhcCCeEEE
Q 017293 260 ANGDTA----NKIGTYSLALCAKFHNILFYV 286 (374)
Q Consensus 260 ~nG~v~----nkiGT~~lA~~Ak~~~vPvyV 286 (374)
-||+-. |--=|..+.-.||.+|++|=.
T Consensus 103 ~DgS~lp~eeNi~~T~~vv~~Ah~~gvsVEa 133 (284)
T PRK12857 103 IDGSKLPLEENIALTKKVVEIAHAVGVSVEA 133 (284)
T ss_pred EeCCCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 999975 677788899999999988754
No 216
>TIGR00172 maf MAF protein. This nonessential gene causes inhibition of septation when overexpressed. A member of the family is found in the Archaeon Pyrococcus horikoshii and another in the round worm Caenorhabditis elegans.
Probab=24.65 E-value=4.4e+02 Score=23.80 Aligned_cols=41 Identities=27% Similarity=0.278 Sum_probs=31.1
Q ss_pred CCEEEEcceeeec-CCCeecccccHHHH--HHHHhcCCeEEEec
Q 017293 248 VSAVIVGADRVAA-NGDTANKIGTYSLA--LCAKFHNILFYVAA 288 (374)
Q Consensus 248 vd~VlvGAd~i~~-nG~v~nkiGT~~lA--~~Ak~~~vPvyV~a 288 (374)
-+.+++|||.|.. ||.++.|=.+..-| ++-+..|.+..|.+
T Consensus 62 ~~~~vI~aDTvV~~~g~ilgKP~~~~eA~~~L~~lsG~~h~V~T 105 (183)
T TIGR00172 62 ADALIIGADTVVILDGEIYGKPKDKEEAAEFLRKLSGQEHEVYT 105 (183)
T ss_pred CCCEEEEeCeEEEECCEEecCCCCHHHHHHHHHHhCCCCcEEEE
Confidence 3679999999777 88899999998877 45666666555543
No 217
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=24.58 E-value=6e+02 Score=24.19 Aligned_cols=86 Identities=19% Similarity=0.187 Sum_probs=49.3
Q ss_pred ccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeE-EEc------chHHHHHHhcCCCCEEEEccee
Q 017293 185 GYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPAT-LIA------DSAAAALMKDGRVSAVIVGADR 257 (374)
Q Consensus 185 g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vt-lI~------Dsav~~~m~~~~vd~VlvGAd~ 257 (374)
|+.++-.+.. .. .+.++.+.|+ |..+... ...+.|++-. +|. -..=-.+|++.++|.+
T Consensus 137 G~k~l~~f~~-~~-~~~~~~~RvL---P~~~~l~----~~~~~G~~~~~iia~~gPfs~e~n~al~~~~~i~~l------ 201 (256)
T TIGR00715 137 GASWLSHFSL-SQ-DEAVVFVRVL---PYPQALA----QALKLGFPSDRIIAMRGPFSEELEKALLREYRIDAV------ 201 (256)
T ss_pred CcchHHHHhh-cc-CCceEEEEEC---CCchhhH----HHHHcCCChhcEEEEeCCCCHHHHHHHHHHcCCCEE------
Confidence 4455544432 22 3455666666 4443321 3556677411 111 1122456778899988
Q ss_pred eecCCCeeccc-ccHHHHHHHHhcCCeEEEec
Q 017293 258 VAANGDTANKI-GTYSLALCAKFHNILFYVAA 288 (374)
Q Consensus 258 i~~nG~v~nki-GT~~lA~~Ak~~~vPvyV~a 288 (374)
|+.|.+ .. |+..---+|++.|+||+++.
T Consensus 202 VtK~SG---~~Gg~~eKi~AA~~lgi~vivI~ 230 (256)
T TIGR00715 202 VTKASG---EQGGELEKVKAAEALGINVIRIA 230 (256)
T ss_pred EEcCCC---CccchHHHHHHHHHcCCcEEEEe
Confidence 555542 34 66666689999999999973
No 218
>PLN02206 UDP-glucuronate decarboxylase
Probab=24.48 E-value=2.3e+02 Score=29.17 Aligned_cols=109 Identities=14% Similarity=0.118 Sum_probs=56.2
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCC
Q 017293 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGR 247 (374)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~ 247 (374)
.+.+||.-+-+|-+ | ..+++.+.++|. +|+++...+.....++ ...+.. .++.++.-...-..+ .+
T Consensus 118 ~~~kILVTGatGfI-----G--s~Lv~~Ll~~G~--~V~~ld~~~~~~~~~~-~~~~~~--~~~~~i~~D~~~~~l--~~ 183 (442)
T PLN02206 118 KGLRVVVTGGAGFV-----G--SHLVDRLMARGD--SVIVVDNFFTGRKENV-MHHFSN--PNFELIRHDVVEPIL--LE 183 (442)
T ss_pred CCCEEEEECcccHH-----H--HHHHHHHHHCcC--EEEEEeCCCccchhhh-hhhccC--CceEEEECCccChhh--cC
Confidence 34677777655433 1 224455555564 5665543221111111 111222 234444211122234 47
Q ss_pred CCEEEEcceeeecCCC--------eecccccHHHHHHHHhcCCeEEEeccC
Q 017293 248 VSAVIVGADRVAANGD--------TANKIGTYSLALCAKFHNILFYVAAPL 290 (374)
Q Consensus 248 vd~VlvGAd~i~~nG~--------v~nkiGT~~lA~~Ak~~~vPvyV~a~~ 290 (374)
+|.|+=-|-....... -.|-.||..+.-+|+..+++|+.+.-.
T Consensus 184 ~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~r~V~~SS~ 234 (442)
T PLN02206 184 VDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTS 234 (442)
T ss_pred CCEEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCh
Confidence 8888776643211111 167889999999999999987766544
No 219
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=24.33 E-value=1.8e+02 Score=27.81 Aligned_cols=29 Identities=10% Similarity=-0.109 Sum_probs=23.5
Q ss_pred ecccccHHHHHHHHhcCCeEEEeccCccc
Q 017293 265 ANKIGTYSLALCAKFHNILFYVAAPLTSI 293 (374)
Q Consensus 265 ~nkiGT~~lA~~Ak~~~vPvyV~a~~~K~ 293 (374)
+|-.||..++-+|+.++++|+.+...+=|
T Consensus 80 ~N~~~~~~l~~aa~~~g~~~v~~Ss~~Vy 108 (299)
T PRK09987 80 LNATSVEAIAKAANEVGAWVVHYSTDYVF 108 (299)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEccceEE
Confidence 68899999999999999987766554434
No 220
>PRK04694 Maf-like protein; Reviewed
Probab=24.29 E-value=3.9e+02 Score=24.25 Aligned_cols=82 Identities=15% Similarity=0.119 Sum_probs=48.2
Q ss_pred CCCeeEEEE---ecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCCCCEEEEcceeeec-CCCeecccccHHHH
Q 017293 199 EGVLERAYC---SETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAA-NGDTANKIGTYSLA 274 (374)
Q Consensus 199 ~g~~~~V~v---~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~vd~VlvGAd~i~~-nG~v~nkiGT~~lA 274 (374)
.|..|.++. .|+.+..+.-+-.+..|+...- + ++..-++...-+.+++|||.|+. ||.++.|=.+..-|
T Consensus 18 ~g~~f~~~~~~idE~~~~~~~p~~~v~~lA~~KA------~-~v~~~~~~~~~~~lvI~aDTvv~~~g~ilgKP~~~~eA 90 (190)
T PRK04694 18 LDVPFQTLQLDVPEVRAADESPDHYVQRVALEKA------H-AGLALVQAADADAIVLGSDTEVVLGERVFGKPVDVDDA 90 (190)
T ss_pred CCCCcEEecCCCCCCCCCCCCHHHHHHHHHHHHH------H-HHHHHhhccCCCCEEEEeCeEEEECCEEecCCCCHHHH
Confidence 377888874 5654333322223444543221 1 11111211235789999999775 89999999998877
Q ss_pred --HHHHhcCCeEEEe
Q 017293 275 --LCAKFHNILFYVA 287 (374)
Q Consensus 275 --~~Ak~~~vPvyV~ 287 (374)
++-+..|....|.
T Consensus 91 ~~~L~~lsG~~h~V~ 105 (190)
T PRK04694 91 IAMLRALSGRTHQVL 105 (190)
T ss_pred HHHHHHhCCCceEEE
Confidence 4666667655554
No 221
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=24.23 E-value=1.6e+02 Score=28.17 Aligned_cols=14 Identities=7% Similarity=-0.135 Sum_probs=9.7
Q ss_pred CCCCEEEEcceeee
Q 017293 246 GRVSAVIVGADRVA 259 (374)
Q Consensus 246 ~~vd~VlvGAd~i~ 259 (374)
.++|.|+.-++..+
T Consensus 52 ~~~D~v~~~~~g~~ 65 (299)
T PRK14571 52 KSFDVVFNVLHGTF 65 (299)
T ss_pred cCCCEEEEeCCCCC
Confidence 46788887776554
No 222
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=24.18 E-value=4.3e+02 Score=27.35 Aligned_cols=89 Identities=16% Similarity=0.154 Sum_probs=47.2
Q ss_pred HHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEE-----cchHHHHHHhcCCCCEEEE-cceeeecCCCe
Q 017293 191 GVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLI-----ADSAAAALMKDGRVSAVIV-GADRVAANGDT 264 (374)
Q Consensus 191 ~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI-----~Dsav~~~m~~~~vd~Vlv-GAd~i~~nG~v 264 (374)
++++.+.++|.+...+-+ -|..--. .+--.-.|.++..+ ....+-..+.+...|.+|| |+=.++ +|
T Consensus 21 gl~~~l~~~g~~v~~~K~--Gpd~iD~---~~~~~~~g~~~~nld~~~~~~~~i~~~~~~~~~d~~vIEG~gGl~-dg-- 92 (433)
T PRK13896 21 ATIRALEDAGYAVQPAKA--GPDFIDP---SHHEAVAGRPSRTLDPWLSGEDGMRRNYYRGEGDICVVEGVMGLY-DG-- 92 (433)
T ss_pred HHHHHHHHCCCeeEEEee--CCCCCCH---HHHHHHhCCCcccCChhhCCHHHHHHHHHhhcCCEEEEECCCccc-cC--
Confidence 456666777766655543 4432111 11111234444321 1222222223345777765 555554 33
Q ss_pred ecccccHHHHHHHHhcCCeEEEeccCc
Q 017293 265 ANKIGTYSLALCAKFHNILFYVAAPLT 291 (374)
Q Consensus 265 ~nkiGT~~lA~~Ak~~~vPvyV~a~~~ 291 (374)
+....|=+||..+.||++|+...
T Consensus 93 ----~~~s~adla~~l~~PviLVv~~~ 115 (433)
T PRK13896 93 ----DVSSTAMVAEALDLPVVLVVDAK 115 (433)
T ss_pred ----CCCCHHHHHHHHCCCEEEEEcCc
Confidence 22568889999999999987654
No 223
>PRK15456 universal stress protein UspG; Provisional
Probab=24.16 E-value=1.5e+02 Score=24.57 Aligned_cols=40 Identities=13% Similarity=0.262 Sum_probs=27.8
Q ss_pred hcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEe
Q 017293 244 KDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (374)
Q Consensus 244 ~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~ 287 (374)
++.++|++++|+++= ..+.. -+|+-.-.+ .++-+.||+|+
T Consensus 102 ~~~~~DLIVmG~~g~-~~~~~--llGS~a~~v-~~~a~~pVLvV 141 (142)
T PRK15456 102 EELGADVVVIGSRNP-SISTH--LLGSNASSV-IRHANLPVLVV 141 (142)
T ss_pred hhcCCCEEEEcCCCC-Cccce--ecCccHHHH-HHcCCCCEEEe
Confidence 457999999999872 22222 257765544 77788999986
No 224
>PRK05634 nucleosidase; Provisional
Probab=24.15 E-value=59 Score=29.34 Aligned_cols=25 Identities=12% Similarity=0.106 Sum_probs=21.1
Q ss_pred CeecccccHHHHHHHHhcCCeEEEe
Q 017293 263 DTANKIGTYSLALCAKFHNILFYVA 287 (374)
Q Consensus 263 ~v~nkiGT~~lA~~Ak~~~vPvyV~ 287 (374)
..+-..=++.+|.+|+.+|+||+++
T Consensus 127 a~~vDME~aAva~va~~~~vPf~~i 151 (185)
T PRK05634 127 ADLVDMEGYAVAAVAAEFGVPCRLV 151 (185)
T ss_pred CeEEecHHHHHHHHHHHhCCCEEEE
Confidence 3455677899999999999999986
No 225
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=24.06 E-value=1.7e+02 Score=26.36 Aligned_cols=82 Identities=7% Similarity=-0.084 Sum_probs=42.4
Q ss_pred eEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCCCCEEEEcceeeecCCCee----cccccHHHHHHHH
Q 017293 203 ERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTA----NKIGTYSLALCAK 278 (374)
Q Consensus 203 ~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~----nkiGT~~lA~~Ak 278 (374)
+-|.+...-|.... ....+.|.+.|+++..+...... -+ .++|.++++-- .++.. ...+-.....-+.
T Consensus 3 i~vl~~~~~~~e~~-~~~~~~l~~~g~~~~~~~~~~~~-~l--~~~d~iii~GG----~~~~~~~~~~~~~~~~~i~~~~ 74 (200)
T PRK13527 3 IGVLALQGDVEEHI-DALKRALDELGIDGEVVEVRRPG-DL--PDCDALIIPGG----ESTTIGRLMKREGILDEIKEKI 74 (200)
T ss_pred EEEEEECCccHHHH-HHHHHHHHhcCCCeEEEEeCChH-Hh--ccCCEEEECCC----cHHHHHHHHhhccHHHHHHHHH
Confidence 44555555443322 23456678888877666644332 34 56777666542 11111 2223222222334
Q ss_pred hcCCeEEEeccCcc
Q 017293 279 FHNILFYVAAPLTS 292 (374)
Q Consensus 279 ~~~vPvyV~a~~~K 292 (374)
..++|++-+|--+-
T Consensus 75 ~~~~pilGIC~G~Q 88 (200)
T PRK13527 75 EEGLPILGTCAGLI 88 (200)
T ss_pred HCCCeEEEECHHHH
Confidence 47899997775444
No 226
>PRK07503 methionine gamma-lyase; Provisional
Probab=23.97 E-value=7.5e+02 Score=24.88 Aligned_cols=87 Identities=11% Similarity=0.033 Sum_probs=45.3
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcch-HhHHHHHhhCCCCeEEEcc---hHHHHHHhcCCCCEEEEcceeeecCCCeecc
Q 017293 192 VIRALHSEGVLERAYCSETRPFNQGS-RLTAFELVHDRIPATLIAD---SAAAALMKDGRVSAVIVGADRVAANGDTANK 267 (374)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~eG~-~l~a~~L~~~GI~vtlI~D---sav~~~m~~~~vd~VlvGAd~i~~nG~v~nk 267 (374)
++....+.|. +|++. .|.+.+. .+....+...|+++..+.- ..+...+ +++...|++ ..-.-+.|.+..
T Consensus 96 ~l~~ll~~Gd--~Viv~--~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i-~~~tklV~l-e~p~NPtG~~~d- 168 (403)
T PRK07503 96 TLWTLLRPGD--EVIVD--QTLYGCTFAFLHHGLGEFGVTVRHVDLTDPAALKAAI-SDKTRMVYF-ETPANPNMRLVD- 168 (403)
T ss_pred HHHHHcCCCC--EEEEc--cCccchHHHHHHHHHhhCCEEEEEeCCCCHHHHHHhc-CccCcEEEE-eCCCCCCCeeeC-
Confidence 3444444443 56653 3555332 1222345678999888752 2233333 235555544 122222343333
Q ss_pred cccHHHHHHHHhcCCeEEEe
Q 017293 268 IGTYSLALCAKFHNILFYVA 287 (374)
Q Consensus 268 iGT~~lA~~Ak~~~vPvyV~ 287 (374)
--.++-+|+.+|++++|=
T Consensus 169 --i~~I~~la~~~gi~lIvD 186 (403)
T PRK07503 169 --IAAVAEIAHGAGAKVVVD 186 (403)
T ss_pred --HHHHHHHHHHcCCEEEEE
Confidence 256777889999998873
No 227
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=23.93 E-value=6e+02 Score=23.76 Aligned_cols=57 Identities=21% Similarity=0.142 Sum_probs=38.1
Q ss_pred HHHHhhC--CCCeEEEc----chHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEec
Q 017293 221 AFELVHD--RIPATLIA----DSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAA 288 (374)
Q Consensus 221 a~~L~~~--GI~vtlI~----Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a 288 (374)
++.|.+. .++++.+. ...+..++ .+.|.||...|.... .+.+.-+|+.+++|++..+
T Consensus 84 ~~~l~~inp~v~i~~~~~~i~~~~~~~~~--~~~DlVvd~~D~~~~---------r~~ln~~~~~~~ip~v~~~ 146 (240)
T TIGR02355 84 KDALTQINPHIAINPINAKLDDAELAALI--AEHDIVVDCTDNVEV---------RNQLNRQCFAAKVPLVSGA 146 (240)
T ss_pred HHHHHHHCCCcEEEEEeccCCHHHHHHHh--hcCCEEEEcCCCHHH---------HHHHHHHHHHcCCCEEEEE
Confidence 4456544 45665554 12344566 789999888877532 4667788999999999753
No 228
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=23.90 E-value=4.3e+02 Score=25.33 Aligned_cols=77 Identities=18% Similarity=0.122 Sum_probs=42.0
Q ss_pred HHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCe
Q 017293 152 AIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPA 231 (374)
Q Consensus 152 ~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~v 231 (374)
.+.++...|+... .-..+|.++..| |.-+|+|.+++.....+| .+++=+...-...=.++ ...|....-+.
T Consensus 38 ~l~~Nt~~Fl~G~---pannvLL~G~rG---tGKSSlVkall~~y~~~G--LRlIev~k~~L~~l~~l-~~~l~~~~~kF 108 (249)
T PF05673_consen 38 ALIENTEQFLQGL---PANNVLLWGARG---TGKSSLVKALLNEYADQG--LRLIEVSKEDLGDLPEL-LDLLRDRPYKF 108 (249)
T ss_pred HHHHHHHHHHcCC---CCcceEEecCCC---CCHHHHHHHHHHHHhhcC--ceEEEECHHHhccHHHH-HHHHhcCCCCE
Confidence 3444444556521 225677787765 455667777777776666 55554443222221223 33456666666
Q ss_pred EEEcch
Q 017293 232 TLIADS 237 (374)
Q Consensus 232 tlI~Ds 237 (374)
.+.+|-
T Consensus 109 Ilf~DD 114 (249)
T PF05673_consen 109 ILFCDD 114 (249)
T ss_pred EEEecC
Confidence 666664
No 229
>PRK05414 urocanate hydratase; Provisional
Probab=23.63 E-value=5.6e+02 Score=27.28 Aligned_cols=38 Identities=24% Similarity=0.318 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHhCCCCccc-HHHHHHHHHHHHHHHh
Q 017293 85 DAASFLGNKLEYLVSSRPTAVN-LSDAAAKLKEIISKAA 122 (374)
Q Consensus 85 el~~~l~~~~~~L~~~RPt~v~-l~nai~~~~~~i~~~~ 122 (374)
+|.+.|..+.+...+-+|.++. ++|+.+.+.+.+++..
T Consensus 218 ~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~~i 256 (556)
T PRK05414 218 DLDEALALAEEAKAAGEPLSIGLLGNAADVLPELVRRGI 256 (556)
T ss_pred CHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHcCC
Confidence 4445566666667788999986 8999998888887654
No 230
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=23.60 E-value=1.6e+02 Score=24.63 Aligned_cols=69 Identities=14% Similarity=0.051 Sum_probs=40.2
Q ss_pred cccHHHHHHHHHHC--CCeeEEEEecCC--CCCcchHhHHHHHhhCCCCeE-EEcchHHHHHHhcCCCCEEEEcce
Q 017293 186 YGTALGVIRALHSE--GVLERAYCSETR--PFNQGSRLTAFELVHDRIPAT-LIADSAAAALMKDGRVSAVIVGAD 256 (374)
Q Consensus 186 ~~tv~~~l~~a~~~--g~~~~V~v~Esr--P~~eG~~l~a~~L~~~GI~vt-lI~Dsav~~~m~~~~vd~VlvGAd 256 (374)
+-.+.+++++..++ +.++.|+-.=+. |...=...+...|.+.||+.. ..+-.--...+ .+.|.||.=.+
T Consensus 12 S~mAEai~~~~~~~~~~~~~~v~SAG~~~~~~~~~~~~a~~~l~~~gid~~~~~s~~l~~~~~--~~~D~Ii~m~~ 85 (138)
T PF01451_consen 12 SPMAEAILRHLLKQRLGDRFEVESAGTEAWPGEPVDPRAIAVLKEHGIDISGHRSRQLTEEDL--DEADLIITMDD 85 (138)
T ss_dssp HHHHHHHHHHHHHHTHTTTEEEEEEESSSTTTSSSTHHHHHHHHHTTSSCTTSBBCBGGHHHH--HHSSEEEESSH
T ss_pred HHHHHHHHHHhccccccCCcEEEEEeecccccccccchHHHHHHHhCCCcccceecccccccc--ccCCEEEEccH
Confidence 34567778776442 567888877555 433322334667999999865 22222222334 57888865443
No 231
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=23.58 E-value=3.9e+02 Score=25.97 Aligned_cols=70 Identities=16% Similarity=0.117 Sum_probs=41.8
Q ss_pred CCCeeEEEEecCCCCCcchHhHHHHHhhC-CCCeEEEcchHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHH
Q 017293 199 EGVLERAYCSETRPFNQGSRLTAFELVHD-RIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCA 277 (374)
Q Consensus 199 ~g~~~~V~v~EsrP~~eG~~l~a~~L~~~-GI~vtlI~Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~A 277 (374)
+..++++++.-..|.. ..++ ...+.+. |+++.++.+ .+..++ ..+|.+++.+ |+..+ =|
T Consensus 217 ~~~~~~~ii~~~~~~~-~~~~-~~~~~~~~~~~v~~~~~-~~~~~~--~~aDl~v~~s-------------G~~~l--Ea 276 (380)
T PRK00025 217 RYPDLRFVLPLVNPKR-REQI-EEALAEYAGLEVTLLDG-QKREAM--AAADAALAAS-------------GTVTL--EL 276 (380)
T ss_pred hCCCeEEEEecCChhh-HHHH-HHHHhhcCCCCeEEEcc-cHHHHH--HhCCEEEECc-------------cHHHH--HH
Confidence 3345666554322322 1222 2334555 788776654 567777 8899998832 55554 45
Q ss_pred HhcCCeEEEec
Q 017293 278 KFHNILFYVAA 288 (374)
Q Consensus 278 k~~~vPvyV~a 288 (374)
-.+|+|+++.-
T Consensus 277 ~a~G~PvI~~~ 287 (380)
T PRK00025 277 ALLKVPMVVGY 287 (380)
T ss_pred HHhCCCEEEEE
Confidence 77899999874
No 232
>PRK15482 transcriptional regulator MurR; Provisional
Probab=23.53 E-value=3.6e+02 Score=25.61 Aligned_cols=78 Identities=15% Similarity=0.049 Sum_probs=0.0
Q ss_pred EEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHH----HhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHh
Q 017293 204 RAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAAL----MKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKF 279 (374)
Q Consensus 204 ~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~----m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~ 279 (374)
+||+.=.+.-.-=++.+...|...|.+|.+..|...... + .+=|.+|+ |.-.| ..--+..++-.||.
T Consensus 137 ~I~i~G~G~S~~~A~~l~~~l~~~g~~~~~~~d~~~~~~~~~~~--~~~Dv~i~----iS~sg---~t~~~~~~~~~a~~ 207 (285)
T PRK15482 137 FIQITGLGGSALVGRDLSFKLMKIGYRVACEADTHVQATVSQAL--KKGDVQIA----ISYSG---SKKEIVLCAEAARK 207 (285)
T ss_pred eeEEEEeChhHHHHHHHHHHHHhCCCeeEEeccHhHHHHHHhcC--CCCCEEEE----EeCCC---CCHHHHHHHHHHHH
Q ss_pred cCCeEEEeccC
Q 017293 280 HNILFYVAAPL 290 (374)
Q Consensus 280 ~~vPvyV~a~~ 290 (374)
+|+|++.++..
T Consensus 208 ~g~~iI~IT~~ 218 (285)
T PRK15482 208 QGATVIAITSL 218 (285)
T ss_pred CCCEEEEEeCC
No 233
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=23.34 E-value=7.3e+02 Score=24.54 Aligned_cols=57 Identities=12% Similarity=0.075 Sum_probs=36.8
Q ss_pred HHHHhhC--CCCeEEEc----chHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEec
Q 017293 221 AFELVHD--RIPATLIA----DSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAA 288 (374)
Q Consensus 221 a~~L~~~--GI~vtlI~----Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a 288 (374)
++.|.+. ++.+..+. +..+-.++ .++|.||.+.|..-. -+.+.-+|+.+++|++..+
T Consensus 86 ~~~l~~inp~v~i~~~~~~~~~~~~~~~~--~~~DlVid~~D~~~~---------r~~in~~~~~~~ip~i~~~ 148 (338)
T PRK12475 86 KEHLRKINSEVEIVPVVTDVTVEELEELV--KEVDLIIDATDNFDT---------RLLINDLSQKYNIPWIYGG 148 (338)
T ss_pred HHHHHHHCCCcEEEEEeccCCHHHHHHHh--cCCCEEEEcCCCHHH---------HHHHHHHHHHcCCCEEEEE
Confidence 3445543 45555543 23345566 789999988875422 2456778999999998653
No 234
>KOG1466 consensus Translation initiation factor 2B, alpha subunit (eIF-2Balpha/GCN3) [Translation, ribosomal structure and biogenesis]
Probab=23.32 E-value=7e+02 Score=24.31 Aligned_cols=81 Identities=19% Similarity=0.270 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCCccc-HHHHHHHHHHHHHHHhh---ccCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 017293 83 AADAASFLGNKLEYLVSSRPTAVN-LSDAAAKLKEIISKAAA---TASEANSVFQAYIEAAEIMLKDDVATNKA-IGSYG 157 (374)
Q Consensus 83 ~~el~~~l~~~~~~L~~~RPt~v~-l~nai~~~~~~i~~~~~---~~~~~~e~~~~l~~~~~~~~~e~~~a~~~-I~~~~ 157 (374)
...-...++...+.|+.++++.+. +.|.++.--..+++... +..++++++.+++..+.....++.+.|++ +.++|
T Consensus 27 ~a~~vAAIraL~~vL~~s~a~Ti~el~~~l~~a~~tL~~~d~ss~Sl~agcdlF~Rfvtr~slld~~Df~~ck~~l~erg 106 (313)
T KOG1466|consen 27 LAMAVAAIRALLEVLRRSQATTIAELENELKSASATLKKTDTSSISLRAGCDLFMRFVTRASLLDYEDFEQCKQHLLERG 106 (313)
T ss_pred hhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHccCccchhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Confidence 445678899999999999999763 44433332222222211 23467889998888886566677766665 56778
Q ss_pred HHHhHh
Q 017293 158 ASFLQN 163 (374)
Q Consensus 158 ~~~i~~ 163 (374)
..|+.+
T Consensus 107 ~~F~~~ 112 (313)
T KOG1466|consen 107 ELFIER 112 (313)
T ss_pred HHHHHH
Confidence 777773
No 235
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=23.32 E-value=5.8e+02 Score=27.05 Aligned_cols=38 Identities=21% Similarity=0.339 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHhCCCCccc-HHHHHHHHHHHHHHHh
Q 017293 85 DAASFLGNKLEYLVSSRPTAVN-LSDAAAKLKEIISKAA 122 (374)
Q Consensus 85 el~~~l~~~~~~L~~~RPt~v~-l~nai~~~~~~i~~~~ 122 (374)
++.+.|..+-+...+-+|.++. ++|+.+.+.+.+++..
T Consensus 209 ~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~r~i 247 (545)
T TIGR01228 209 SLDEALARAEEAKAEGKPISIGLLGNAAEVLPELLKRGV 247 (545)
T ss_pred CHHHHHHHHHHHHHcCCceEEEeeccHHHHHHHHHHcCC
Confidence 4455566666667888999986 8999999888887653
No 236
>PF04705 TSNR_N: Thiostrepton-resistance methylase, N terminus; InterPro: IPR006795 This region is found in some members of the SpoU-type rRNA methylase family (IPR001537 from INTERPRO).; GO: 0008649 rRNA methyltransferase activity, 0046677 response to antibiotic; PDB: 3GYQ_B 3NK6_A 3NK7_A.
Probab=23.23 E-value=1.6e+02 Score=24.36 Aligned_cols=50 Identities=20% Similarity=0.238 Sum_probs=30.1
Q ss_pred HHHHHHHHCCCe-eEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHH
Q 017293 191 GVIRALHSEGVL-ERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALM 243 (374)
Q Consensus 191 ~~l~~a~~~g~~-~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m 243 (374)
+.|.++...|.. +.||-.|+.|...+. .+ ...+.||++.++.-+-+--++
T Consensus 38 EPL~~~i~AGvefieVYg~~~~p~~~~l--l~-~c~~r~Ipvrlv~~~v~N~lF 88 (115)
T PF04705_consen 38 EPLTHSIRAGVEFIEVYGSDGSPVPPEL--LA-ACRQRGIPVRLVDSAVVNQLF 88 (115)
T ss_dssp HHHHHHHCTT-EEEEEEEETTS---CCC--CH-HHHCTT--EEEE-HHHHCCCS
T ss_pred hHHHHHHhcCcEEEEEeeecCCCCChHH--HH-HHHhcCCceEEecHHHHHHHH
Confidence 467777788886 569999999998653 23 467899999998654433333
No 237
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=23.20 E-value=2.1e+02 Score=25.75 Aligned_cols=101 Identities=20% Similarity=0.192 Sum_probs=46.2
Q ss_pred cEEEEecCCCccccccc-ccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcc---hHHHHHHhc
Q 017293 170 FSVLTHCNTGSLATAGY-GTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIAD---SAAAALMKD 245 (374)
Q Consensus 170 ~~ILT~~~sg~lat~g~-~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~D---sav~~~m~~ 245 (374)
..|-.||-| .|- ..+..+++...++....+|+++-+.|. |.++ +..+...++.+.+.|- .++..++++
T Consensus 22 ~~iWiHa~S-----vGE~~a~~~Li~~l~~~~p~~~illT~~T~t--g~~~-~~~~~~~~v~~~~~P~D~~~~~~rfl~~ 93 (186)
T PF04413_consen 22 PLIWIHAAS-----VGEVNAARPLIKRLRKQRPDLRILLTTTTPT--GREM-ARKLLPDRVDVQYLPLDFPWAVRRFLDH 93 (186)
T ss_dssp T-EEEE-SS-----HHHHHHHHHHHHHHTT---TS-EEEEES-CC--HHHH-HHGG-GGG-SEEE---SSHHHHHHHHHH
T ss_pred CcEEEEECC-----HHHHHHHHHHHHHHHHhCCCCeEEEEecCCc--hHHH-HHHhCCCCeEEEEeCccCHHHHHHHHHH
Confidence 789999865 111 123345666666666788888876554 5554 3444445888999884 344555655
Q ss_pred CCCCEEEE-cceeeecCCCeecccccHHHHHHHHhcCCeEEEeccC
Q 017293 246 GRVSAVIV-GADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPL 290 (374)
Q Consensus 246 ~~vd~Vlv-GAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~ 290 (374)
-+.+.+|+ +.| +-+ .+-..|+..|+|++.+-..
T Consensus 94 ~~P~~~i~~EtE-lWP-----------nll~~a~~~~ip~~LvNar 127 (186)
T PF04413_consen 94 WRPDLLIWVETE-LWP-----------NLLREAKRRGIPVVLVNAR 127 (186)
T ss_dssp H--SEEEEES-----H-----------HHHHH-----S-EEEEEE-
T ss_pred hCCCEEEEEccc-cCH-----------HHHHHHhhcCCCEEEEeee
Confidence 56666543 333 323 4556789999999987653
No 238
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=23.18 E-value=2e+02 Score=25.34 Aligned_cols=66 Identities=6% Similarity=-0.105 Sum_probs=35.8
Q ss_pred HHHHHhhCCCCeEEEcchHHHHHH-hcCCCCEEEE-cceeeecCCCeecccccHHHHHHHHhcCCeEEEeccCc
Q 017293 220 TAFELVHDRIPATLIADSAAAALM-KDGRVSAVIV-GADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLT 291 (374)
Q Consensus 220 ~a~~L~~~GI~vtlI~Dsav~~~m-~~~~vd~Vlv-GAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~ 291 (374)
.+..|.+.|+++.+++...-.... .-.++|.||+ |...- .++.+.+...+-+-..++|++-+|=-+
T Consensus 14 ~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~dgvil~gG~~~------~~~~~~~~~i~~~~~~~~PvlGIC~G~ 81 (184)
T cd01743 14 LVQYLRELGAEVVVVRNDEITLEELELLNPDAIVISPGPGH------PEDAGISLEIIRALAGKVPILGVCLGH 81 (184)
T ss_pred HHHHHHHcCCceEEEeCCCCCHHHHhhcCCCEEEECCCCCC------cccchhHHHHHHHHhcCCCEEEECHhH
Confidence 355677888888888866543220 1157888766 33211 112222333222234579999777443
No 239
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=23.10 E-value=2.9e+02 Score=24.73 Aligned_cols=68 Identities=10% Similarity=-0.056 Sum_probs=38.8
Q ss_pred HHHHHhhCCCCeEEEcchHHHHHHhcCCCCEEEEcceeeecCC-CeecccccHHHHHHHHhcCCeEEEeccCcc
Q 017293 220 TAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANG-DTANKIGTYSLALCAKFHNILFYVAAPLTS 292 (374)
Q Consensus 220 ~a~~L~~~GI~vtlI~Dsav~~~m~~~~vd~VlvGAd~i~~nG-~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~K 292 (374)
.++.|++.|++++++.+.. -+ .++|.|+++--.....- ......|....-.-+...++|++-+|--+-
T Consensus 14 ~~~~l~~~g~~v~v~~~~~---~l--~~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~~~~~pilGiC~G~q 82 (198)
T cd01748 14 VANALERLGAEVIITSDPE---EI--LSADKLILPGVGAFGDAMANLRERGLIEALKEAIASGKPFLGICLGMQ 82 (198)
T ss_pred HHHHHHHCCCeEEEEcChH---Hh--ccCCEEEECCCCcHHHHHHHHHHcChHHHHHHHHHCCCcEEEECHHHH
Confidence 4677888999998888643 24 67888877541110000 001123444444444556999997775443
No 240
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=23.04 E-value=2e+02 Score=24.15 Aligned_cols=72 Identities=21% Similarity=0.134 Sum_probs=42.9
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCC
Q 017293 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGR 247 (374)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~ 247 (374)
.+.++|..|.+ +++..++..+.+.|.+ +|+++- |......+| +.++ .+..+..++-......+ .+
T Consensus 11 ~~~~vlviGaG--------g~ar~v~~~L~~~g~~-~i~i~n-Rt~~ra~~l-~~~~--~~~~~~~~~~~~~~~~~--~~ 75 (135)
T PF01488_consen 11 KGKRVLVIGAG--------GAARAVAAALAALGAK-EITIVN-RTPERAEAL-AEEF--GGVNIEAIPLEDLEEAL--QE 75 (135)
T ss_dssp TTSEEEEESSS--------HHHHHHHHHHHHTTSS-EEEEEE-SSHHHHHHH-HHHH--TGCSEEEEEGGGHCHHH--HT
T ss_pred CCCEEEEECCH--------HHHHHHHHHHHHcCCC-EEEEEE-CCHHHHHHH-HHHc--CccccceeeHHHHHHHH--hh
Confidence 57889999864 4667788888777654 344433 432223333 3344 34556666655566667 78
Q ss_pred CCEEEEc
Q 017293 248 VSAVIVG 254 (374)
Q Consensus 248 vd~VlvG 254 (374)
+|.||-.
T Consensus 76 ~DivI~a 82 (135)
T PF01488_consen 76 ADIVINA 82 (135)
T ss_dssp ESEEEE-
T ss_pred CCeEEEe
Confidence 8877543
No 241
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=22.93 E-value=7e+02 Score=24.15 Aligned_cols=60 Identities=18% Similarity=0.149 Sum_probs=34.3
Q ss_pred HhhCCCCeEEEcc--------hHHHHHHhc-CCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEe
Q 017293 224 LVHDRIPATLIAD--------SAAAALMKD-GRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (374)
Q Consensus 224 L~~~GI~vtlI~D--------sav~~~m~~-~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~ 287 (374)
....|+++..++. ..+...+.. ++.. ++.-++.=...| +.+.+ ..++-+||.||++++|=
T Consensus 97 a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~-~v~~~~~~~~tG-~~~~i--~~I~~l~~~~g~~livD 165 (363)
T TIGR02326 97 AEYLGIPHHVVDTGEVEPPDVVEVEAILAADPAIT-HIALVHCETTTG-ILNPI--EAVAKLAHRHGKVTIVD 165 (363)
T ss_pred HHHcCCceEEEeCCCCCCCCHHHHHHHHhhCCCcc-EEEEEeecCCcc-ccCcH--HHHHHHHHHcCCEEEEE
Confidence 4567998887753 234444532 2233 233232223355 44443 57888999999988763
No 242
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=22.82 E-value=3.9e+02 Score=24.71 Aligned_cols=65 Identities=15% Similarity=0.159 Sum_probs=38.3
Q ss_pred ccccHHHHHHHHHHCCC-eeE-EEEecCCCCCcchHhHHHHHhhCCCCeEEE----------cchHHHHHHhcCCCCEEE
Q 017293 185 GYGTALGVIRALHSEGV-LER-AYCSETRPFNQGSRLTAFELVHDRIPATLI----------ADSAAAALMKDGRVSAVI 252 (374)
Q Consensus 185 g~~tv~~~l~~a~~~g~-~~~-V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI----------~Dsav~~~m~~~~vd~Vl 252 (374)
|.|+-+..|-.|.+.|+ +-+ +.|.-.+|..-|.+ .-.+.|||+.++ -|.++...|...++|.|+
T Consensus 9 G~GSNlqaiida~~~~~~~a~i~~Visd~~~A~~le----rA~~~gIpt~~~~~k~~~~r~~~d~~l~~~l~~~~~dlvv 84 (200)
T COG0299 9 GNGSNLQAIIDAIKGGKLDAEIVAVISDKADAYALE----RAAKAGIPTVVLDRKEFPSREAFDRALVEALDEYGPDLVV 84 (200)
T ss_pred CCcccHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHH----HHHHcCCCEEEeccccCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 33555554444444443 222 23344566665532 356889998665 367777788788888876
Q ss_pred E
Q 017293 253 V 253 (374)
Q Consensus 253 v 253 (374)
+
T Consensus 85 L 85 (200)
T COG0299 85 L 85 (200)
T ss_pred E
Confidence 5
No 243
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=22.82 E-value=75 Score=31.92 Aligned_cols=95 Identities=15% Similarity=0.091 Sum_probs=65.9
Q ss_pred cccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhH---HHHHhh-C-CCCeEEEcchHHH--HHHhcCCCCEEEEcceee
Q 017293 186 YGTALGVIRALHSEGVLERAYCSETRPFNQGSRLT---AFELVH-D-RIPATLIADSAAA--ALMKDGRVSAVIVGADRV 258 (374)
Q Consensus 186 ~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~---a~~L~~-~-GI~vtlI~Dsav~--~~m~~~~vd~VlvGAd~i 258 (374)
+-++.++++.|.+.+..+-+=+.++.=.+-|..+. ...+++ . .+||.+-.|.+-. .++ . .+=.|-.+|
T Consensus 28 ~e~~~avi~AAee~~sPvIiq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPValHLDHg~~~e~i~--~---ai~~GftSV 102 (347)
T PRK09196 28 LEQVQAIMEAADETDSPVILQASAGARKYAGEPFLRHLILAAVEEYPHIPVVMHQDHGNSPATCQ--R---AIQLGFTSV 102 (347)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCccHhhhCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHH--H---HHHcCCCEE
Confidence 45788899999887766544444433223343332 333443 3 4999999998742 233 2 333588999
Q ss_pred ecCCCee-----------cccccHHHHHHHHhcCCeEE
Q 017293 259 AANGDTA-----------NKIGTYSLALCAKFHNILFY 285 (374)
Q Consensus 259 ~~nG~v~-----------nkiGT~~lA~~Ak~~~vPvy 285 (374)
+-||+-. |--=|..+.-.|+.+|++|=
T Consensus 103 MiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv~VE 140 (347)
T PRK09196 103 MMDGSLKADGKTPASYEYNVDVTRKVVEMAHACGVSVE 140 (347)
T ss_pred EecCCCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 9999988 88999999999999999886
No 244
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=22.60 E-value=4.2e+02 Score=23.92 Aligned_cols=28 Identities=11% Similarity=0.082 Sum_probs=23.9
Q ss_pred ccccHHHHHHHHhcCCeEEEeccCcccc
Q 017293 267 KIGTYSLALCAKFHNILFYVAAPLTSID 294 (374)
Q Consensus 267 kiGT~~lA~~Ak~~~vPvyV~a~~~K~~ 294 (374)
..|.+-...+|..+++|.+.+.|...+.
T Consensus 67 SlGG~~A~~La~~~~~~avLiNPav~p~ 94 (187)
T PF05728_consen 67 SLGGFYATYLAERYGLPAVLINPAVRPY 94 (187)
T ss_pred ChHHHHHHHHHHHhCCCEEEEcCCCCHH
Confidence 5688888899999999999999887754
No 245
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=22.51 E-value=1.6e+02 Score=32.00 Aligned_cols=50 Identities=6% Similarity=-0.044 Sum_probs=31.9
Q ss_pred ccccHHHHHHHHHHCCCeeEEEEecCCCCC-cchHh-HHHHHhhCCCCeEEEc
Q 017293 185 GYGTALGVIRALHSEGVLERAYCSETRPFN-QGSRL-TAFELVHDRIPATLIA 235 (374)
Q Consensus 185 g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~-eG~~l-~a~~L~~~GI~vtlI~ 235 (374)
+-|.+...|-.|.++||+..|.|= =.-.+ |...+ -|+.|.+.|+.|.|-.
T Consensus 382 ~dSpIV~ALi~AA~nGKqVtvlVE-LkARFDEE~NI~WAk~LE~AGvhVvyG~ 433 (696)
T COG0855 382 KDSPIVRALIDAAENGKQVTVLVE-LKARFDEEANIHWAKRLERAGVHVVYGV 433 (696)
T ss_pred CCCHHHHHHHHHHHcCCeEEEEEE-EhhhcChhhhhHHHHHHHhCCcEEEecc
Confidence 456777767777778998887763 22222 22222 2678999999888743
No 246
>PRK02141 Maf-like protein; Reviewed
Probab=22.38 E-value=5.6e+02 Score=23.66 Aligned_cols=81 Identities=22% Similarity=0.174 Sum_probs=47.5
Q ss_pred CCCeeEEEE---ecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCCCCEEEEcceeee-cCCCeecccccHHHH
Q 017293 199 EGVLERAYC---SETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVA-ANGDTANKIGTYSLA 274 (374)
Q Consensus 199 ~g~~~~V~v---~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~vd~VlvGAd~i~-~nG~v~nkiGT~~lA 274 (374)
.|..|.|+. .|+.+..+.-.-.+.+|++..-. +++.-+. ..-+.+|+|||.|+ -||.++.|=.+..-|
T Consensus 27 ~G~~f~v~~~~iDE~~~~~~~p~~~~~~lA~~KA~-------~v~~~l~-~~~~~iVI~aDTvV~~~g~ilgKP~~~~eA 98 (207)
T PRK02141 27 LRLPFDVVSPDIDETPLAGETPAATALRLAAAKAR-------AVAATID-APPGALVIGSDQVATFDGLQIGKPGTHERA 98 (207)
T ss_pred CCCCeEEEcCCCCCCCCCCCCHHHHHHHHHHHHHH-------HHHHhhc-cCCCCEEEEeCeEEEECCEEecCCCCHHHH
Confidence 388888774 35443333222234445432210 1122110 23478999999977 488899999998877
Q ss_pred --HHHHhcCCeEEEe
Q 017293 275 --LCAKFHNILFYVA 287 (374)
Q Consensus 275 --~~Ak~~~vPvyV~ 287 (374)
++-+..|..--|.
T Consensus 99 ~~mL~~lsG~~H~V~ 113 (207)
T PRK02141 99 LAQLQAMRGRTVEFH 113 (207)
T ss_pred HHHHHHhCCCceEEE
Confidence 4666667655554
No 247
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=22.36 E-value=7.7e+02 Score=24.41 Aligned_cols=56 Identities=16% Similarity=0.112 Sum_probs=36.0
Q ss_pred HHHhhC--CCCeEEEc----chHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEec
Q 017293 222 FELVHD--RIPATLIA----DSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAA 288 (374)
Q Consensus 222 ~~L~~~--GI~vtlI~----Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a 288 (374)
+.|.+. .+.++.+. ...+..++ .++|.||.+.|.. ---+.+.-+|..+++|++..+
T Consensus 87 ~~l~~inp~v~v~~~~~~~~~~~~~~~~--~~~DlVid~~Dn~---------~~r~~ln~~~~~~~iP~i~~~ 148 (339)
T PRK07688 87 KRLEEINSDVRVEAIVQDVTAEELEELV--TGVDLIIDATDNF---------ETRFIVNDAAQKYGIPWIYGA 148 (339)
T ss_pred HHHHHHCCCcEEEEEeccCCHHHHHHHH--cCCCEEEEcCCCH---------HHHHHHHHHHHHhCCCEEEEe
Confidence 345543 35554443 23345567 7899999887743 224567788999999998644
No 248
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=22.33 E-value=7.9e+02 Score=24.53 Aligned_cols=81 Identities=17% Similarity=0.042 Sum_probs=40.8
Q ss_pred cHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcc---hHHHHHHhcCCCCEEEEcceeeecCCCe
Q 017293 188 TALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIAD---SAAAALMKDGRVSAVIVGADRVAANGDT 264 (374)
Q Consensus 188 tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~D---sav~~~m~~~~vd~VlvGAd~i~~nG~v 264 (374)
.+....+.+.+-|......++...+...-.++ ....+-...++.| -.....+++.+.|++|
T Consensus 297 ~~~~~~~~l~elG~~v~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~pdl~i------------ 360 (406)
T cd01967 297 RSWHVIAALRELGMEVVAAGYEFGHDDDYERI----RKILDEGTLLVDDYNDLELEELVEKLKPDLIL------------ 360 (406)
T ss_pred chHHHHHHHHHcCCEEEEEEEecCCHHHHHHH----HhcCCCCcEEEeCCCHHHHHHHHHhcCCCEEE------------
Confidence 34444555666787664444443322111111 1111223344433 3455556666677664
Q ss_pred ecccccHHHHHHHHhcCCeEEEec
Q 017293 265 ANKIGTYSLALCAKFHNILFYVAA 288 (374)
Q Consensus 265 ~nkiGT~~lA~~Ak~~~vPvyV~a 288 (374)
|+..-...|+..|+|++...
T Consensus 361 ----g~~~~~~~a~~~gip~~~~~ 380 (406)
T cd01967 361 ----SGIKEKYVAQKLGIPFLDLH 380 (406)
T ss_pred ----eCCcchHHHHhcCCCEEecC
Confidence 22333456788899998654
No 249
>PRK13938 phosphoheptose isomerase; Provisional
Probab=22.33 E-value=6e+02 Score=23.11 Aligned_cols=31 Identities=10% Similarity=0.000 Sum_probs=22.7
Q ss_pred HHHHhhCCCCeEEEcchHHHHHHhcCCCCEEEE
Q 017293 221 AFELVHDRIPATLIADSAAAALMKDGRVSAVIV 253 (374)
Q Consensus 221 a~~L~~~GI~vtlI~Dsav~~~m~~~~vd~Vlv 253 (374)
++.+.+.|+++..|+.+.-+.+- +..|.+|.
T Consensus 133 ~~~Ak~~G~~vI~iT~~~~s~La--~~aD~~l~ 163 (196)
T PRK13938 133 AKTARELGVTVVAMTGESGGQLA--EFADFLIN 163 (196)
T ss_pred HHHHHHCCCEEEEEeCCCCChhh--hhCCEEEE
Confidence 45667889999999987666665 56777663
No 250
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=22.05 E-value=6.5e+02 Score=23.49 Aligned_cols=64 Identities=16% Similarity=0.123 Sum_probs=38.5
Q ss_pred HHHHhhCC--CCeEEEc-----chHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccCc-c
Q 017293 221 AFELVHDR--IPATLIA-----DSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLT-S 292 (374)
Q Consensus 221 a~~L~~~G--I~vtlI~-----Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~-K 292 (374)
++.|.+.+ +.++.+. ++.-..+- .+.|.||...|.+. .| ..+.-.|+.+++||+.+.... |
T Consensus 71 ~~~l~~inP~~~V~~~~~~i~~~~~~~l~~--~~~D~VvdaiD~~~------~k---~~L~~~c~~~~ip~I~s~g~g~~ 139 (231)
T cd00755 71 AERIRDINPECEVDAVEEFLTPDNSEDLLG--GDPDFVVDAIDSIR------AK---VALIAYCRKRKIPVISSMGAGGK 139 (231)
T ss_pred HHHHHHHCCCcEEEEeeeecCHhHHHHHhc--CCCCEEEEcCCCHH------HH---HHHHHHHHHhCCCEEEEeCCcCC
Confidence 45565544 4555444 34333332 56898887776652 12 346677899999999765544 4
Q ss_pred ccC
Q 017293 293 IDL 295 (374)
Q Consensus 293 ~~~ 295 (374)
+||
T Consensus 140 ~dp 142 (231)
T cd00755 140 LDP 142 (231)
T ss_pred CCC
Confidence 554
No 251
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=21.99 E-value=4.6e+02 Score=21.65 Aligned_cols=95 Identities=20% Similarity=0.211 Sum_probs=51.2
Q ss_pred EEEEecCCCcccccccccHHHHHHHHHHCCCeeE-EEEecCCC-CCcchHhHHHHHh---hCCCCeEEEcchHHHHHHhc
Q 017293 171 SVLTHCNTGSLATAGYGTALGVIRALHSEGVLER-AYCSETRP-FNQGSRLTAFELV---HDRIPATLIADSAAAALMKD 245 (374)
Q Consensus 171 ~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~-V~v~EsrP-~~eG~~l~a~~L~---~~GI~vtlI~Dsav~~~m~~ 245 (374)
.|..++.+|.+ | ..+.+.+.+. ..++ |-+.+++| -..|..+ . ++. ..|++++ .| ...++
T Consensus 2 rV~i~G~~GrM-----G--~~i~~~i~~~-~~~~lv~~v~~~~~~~~g~d~-g-~~~~~~~~~~~v~--~~--l~~~~-- 65 (124)
T PF01113_consen 2 RVGIVGASGRM-----G--RAIAEAILES-PGFELVGAVDRKPSAKVGKDV-G-ELAGIGPLGVPVT--DD--LEELL-- 65 (124)
T ss_dssp EEEEETTTSHH-----H--HHHHHHHHHS-TTEEEEEEEETTTSTTTTSBC-H-HHCTSST-SSBEB--S---HHHHT--
T ss_pred EEEEECCCCHH-----H--HHHHHHHHhc-CCcEEEEEEecCCcccccchh-h-hhhCcCCcccccc--hh--HHHhc--
Confidence 46667665532 1 2234444443 3444 55667776 4557654 2 343 3444444 33 34555
Q ss_pred CCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccCc
Q 017293 246 GRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLT 291 (374)
Q Consensus 246 ~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~ 291 (374)
.++|.+| +.-+.-+++..+-.|.++++|+++.+.-+
T Consensus 66 ~~~DVvI----------DfT~p~~~~~~~~~~~~~g~~~ViGTTG~ 101 (124)
T PF01113_consen 66 EEADVVI----------DFTNPDAVYDNLEYALKHGVPLVIGTTGF 101 (124)
T ss_dssp TH-SEEE----------EES-HHHHHHHHHHHHHHT-EEEEE-SSS
T ss_pred ccCCEEE----------EcCChHHhHHHHHHHHhCCCCEEEECCCC
Confidence 4577553 23367778888888999999999976443
No 252
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=21.99 E-value=80 Score=31.40 Aligned_cols=93 Identities=13% Similarity=0.201 Sum_probs=55.8
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchH------HHH
Q 017293 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSA------AAA 241 (374)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsa------v~~ 241 (374)
+..+|-|+ ||.+++.++.-|++.|-+--++|-+.|+..- ++....- ++.++-|-+ +.-
T Consensus 17 ~~i~Iat~---------gSHSaL~Il~GAK~EGF~Ti~v~~~gr~~~Y------~~f~~a~-e~i~v~~f~dil~~~iqe 80 (361)
T COG1759 17 EDITIATI---------GSHSALQILDGAKEEGFRTIAVCQRGREKPY------EKFPVAD-EVIIVDKFSDILNEEIQE 80 (361)
T ss_pred cceEEEEe---------ecchHHHHhhhHHhcCCcEEEEEecCccchH------Hhhchhh-eEEEechhHHHhhHHHHH
Confidence 34566666 4578999999999999877777777665431 1111000 333333321 112
Q ss_pred HHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEe
Q 017293 242 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (374)
Q Consensus 242 ~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~ 287 (374)
-+ .+-|.+ +.+||+.+.-+|.-.+ .+.+.+|.+-.
T Consensus 81 ~L--~~~n~I------~IP~gSfv~Y~G~d~i---e~~~~vP~fGn 115 (361)
T COG1759 81 EL--RELNAI------FIPHGSFVAYVGYDGI---ENEFEVPMFGN 115 (361)
T ss_pred HH--HHcCeE------EecCCceEEEecchhh---hhcccCccccc
Confidence 12 344555 4589999999997643 56677887653
No 253
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=21.77 E-value=6.4e+02 Score=27.19 Aligned_cols=34 Identities=12% Similarity=0.054 Sum_probs=26.8
Q ss_pred eeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcc
Q 017293 202 LERAYCSETRPFNQGSRLTAFELVHDRIPATLIAD 236 (374)
Q Consensus 202 ~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~D 236 (374)
++.++|--=+|. +|..++..+|.+.+|+++.|.+
T Consensus 205 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 238 (578)
T PRK15490 205 PVELIIRSLTPE-LRQDFFLKEVLEEQVEVLEIAK 238 (578)
T ss_pred ceeEEEeecCcc-cCcchhHHHHHhcCCceEEeec
Confidence 567776666665 4888889999999999998864
No 254
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=21.72 E-value=4.9e+02 Score=23.87 Aligned_cols=79 Identities=11% Similarity=0.069 Sum_probs=45.4
Q ss_pred EEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchH-----HHHHHhcCCCCEEEEcceeeecCCCeeccccc-HHHHHHH
Q 017293 204 RAYCSETRPFNQGSRLTAFELVHDRIPATLIADSA-----AAALMKDGRVSAVIVGADRVAANGDTANKIGT-YSLALCA 277 (374)
Q Consensus 204 ~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsa-----v~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT-~~lA~~A 277 (374)
+|.+.+..+.+.+. + ...|.+.|+.+.+++-.. ...++ .++|.+|++-- .|+ ..+.+. ..+.--+
T Consensus 2 ~ilv~d~~~~~~~~-~-~~~l~~~G~~~~~~~~~~~~~~~~~~~~--~~~dgliisGG----p~~-~~~~~~~~~~i~~~ 72 (214)
T PRK07765 2 RILVVDNYDSFVFN-L-VQYLGQLGVEAEVWRNDDPRLADEAAVA--AQFDGVLLSPG----PGT-PERAGASIDMVRAC 72 (214)
T ss_pred eEEEEECCCcHHHH-H-HHHHHHcCCcEEEEECCCcCHHHHHHhh--cCCCEEEECCC----CCC-hhhcchHHHHHHHH
Confidence 56777777655442 3 556888899988877543 12224 57888876311 112 122232 2344445
Q ss_pred HhcCCeEEEeccCc
Q 017293 278 KFHNILFYVAAPLT 291 (374)
Q Consensus 278 k~~~vPvyV~a~~~ 291 (374)
...++|++-+|=-.
T Consensus 73 ~~~~~PiLGIC~G~ 86 (214)
T PRK07765 73 AAAGTPLLGVCLGH 86 (214)
T ss_pred HhCCCCEEEEccCH
Confidence 56799999777433
No 255
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=21.53 E-value=5.7e+02 Score=24.58 Aligned_cols=91 Identities=26% Similarity=0.260 Sum_probs=58.4
Q ss_pred cEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHh-HHHHHhhCCCCeEEEcchHHHHHHhcCCC
Q 017293 170 FSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRL-TAFELVHDRIPATLIADSAAAALMKDGRV 248 (374)
Q Consensus 170 ~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l-~a~~L~~~GI~vtlI~Dsav~~~m~~~~v 248 (374)
-+++|.++. -+...|+.|...|-. +.|..+.|-+.+-.-+ |++ +++..++..+.
T Consensus 58 V~vlt~Gp~---------~a~~~lr~aLAmGaD-raili~d~~~~~~d~~~ta~---------------~Laa~~~~~~~ 112 (260)
T COG2086 58 VTVLTMGPP---------QAEEALREALAMGAD-RAILITDRAFAGADPLATAK---------------ALAAAVKKIGP 112 (260)
T ss_pred EEEEEecch---------hhHHHHHHHHhcCCC-eEEEEecccccCccHHHHHH---------------HHHHHHHhcCC
Confidence 677888764 467788998888865 4555554443322222 232 24455666788
Q ss_pred CEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccCcc
Q 017293 249 SAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTS 292 (374)
Q Consensus 249 d~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~K 292 (374)
|.||.|-.++ ||+ .+-+| .++|...|.|.+--+...+
T Consensus 113 ~LVl~G~qa~--D~~-t~qvg----~~lAe~Lg~P~~t~v~~i~ 149 (260)
T COG2086 113 DLVLTGKQAI--DGD-TGQVG----PLLAELLGWPQVTYVSKIE 149 (260)
T ss_pred CEEEEecccc--cCC-ccchH----HHHHHHhCCceeeeEEEEE
Confidence 8999999888 552 34444 3678999999986544333
No 256
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=21.51 E-value=1.5e+02 Score=28.92 Aligned_cols=98 Identities=10% Similarity=-0.063 Sum_probs=64.3
Q ss_pred cccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhH---HHHH-hhCCCCeEEEcchHHHHHHhcCCCCEEEEcceeeecC
Q 017293 186 YGTALGVIRALHSEGVLERAYCSETRPFNQGSRLT---AFEL-VHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAAN 261 (374)
Q Consensus 186 ~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~---a~~L-~~~GI~vtlI~Dsav~~~m~~~~vd~VlvGAd~i~~n 261 (374)
+-++.++++.|.+.+...-+=+.++.=.+-|.... ++.+ .+.++||.+-.|.+-.+-+-..-++. |-.+|+-|
T Consensus 28 ~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHLDHg~~~e~i~~ai~~---GFtSVM~D 104 (286)
T PRK12738 28 AETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHA---GVRSAMID 104 (286)
T ss_pred HHHHHHHHHHHHHHCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHc---CCCeEeec
Confidence 46788899999887765444444432222232221 2222 36789999999987432221123333 88999999
Q ss_pred CCee----cccccHHHHHHHHhcCCeEEE
Q 017293 262 GDTA----NKIGTYSLALCAKFHNILFYV 286 (374)
Q Consensus 262 G~v~----nkiGT~~lA~~Ak~~~vPvyV 286 (374)
|+-. |--=|-.+.-.||.+|++|=.
T Consensus 105 gS~lp~eeNi~~T~evv~~Ah~~gv~VEa 133 (286)
T PRK12738 105 GSHFPFAENVKLVKSVVDFCHSQDCSVEA 133 (286)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 9975 778889999999999998754
No 257
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=21.48 E-value=6.2e+02 Score=23.01 Aligned_cols=37 Identities=5% Similarity=0.113 Sum_probs=24.1
Q ss_pred CCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEecc
Q 017293 246 GRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAP 289 (374)
Q Consensus 246 ~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~ 289 (374)
.+=|.+|+ |..+|..-| ...++-.||.+|.|+++++.
T Consensus 108 ~~gDvli~----iS~SG~s~~---v~~a~~~Ak~~G~~vI~IT~ 144 (196)
T PRK10886 108 HAGDVLLA----ISTRGNSRD---IVKAVEAAVTRDMTIVALTG 144 (196)
T ss_pred CCCCEEEE----EeCCCCCHH---HHHHHHHHHHCCCEEEEEeC
Confidence 44465554 444553222 45566789999999999875
No 258
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=21.45 E-value=6e+02 Score=27.01 Aligned_cols=38 Identities=21% Similarity=0.316 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHhCCCCccc-HHHHHHHHHHHHHHHh
Q 017293 85 DAASFLGNKLEYLVSSRPTAVN-LSDAAAKLKEIISKAA 122 (374)
Q Consensus 85 el~~~l~~~~~~L~~~RPt~v~-l~nai~~~~~~i~~~~ 122 (374)
++.+.++.+.+...+-+|.++. ++|+.+.+.+.+++..
T Consensus 208 ~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~~~~i 246 (546)
T PF01175_consen 208 DLDEALARAKEARAKKEPLSIGLLGNAADLWEELVERGI 246 (546)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHhhccCCeeEEEEeccHHHHHHHHHHcCC
Confidence 4555666666778889999986 8999999888887654
No 259
>PLN02509 cystathionine beta-lyase
Probab=21.34 E-value=8.5e+02 Score=25.31 Aligned_cols=85 Identities=14% Similarity=0.132 Sum_probs=44.2
Q ss_pred HHHHHHHHHCCCeeEEEEecCCCCCcchH-hHHHHHhhCCCCeEEEcchHHHHHHh--cCCCCEEEEcceeeecCCCeec
Q 017293 190 LGVIRALHSEGVLERAYCSETRPFNQGSR-LTAFELVHDRIPATLIADSAAAALMK--DGRVSAVIVGADRVAANGDTAN 266 (374)
Q Consensus 190 ~~~l~~a~~~g~~~~V~v~EsrP~~eG~~-l~a~~L~~~GI~vtlI~Dsav~~~m~--~~~vd~VlvGAd~i~~nG~v~n 266 (374)
+..+..+.+.|. +|++ +.|.+.+.. +....+...|+.+..+...-.-.+-+ .++...|++ . +..|
T Consensus 161 i~~il~ll~~GD--~VI~--~~~~y~~t~~ll~~~l~~~G~~v~~vd~~d~e~l~~ai~~~TklV~l-------e-sPsN 228 (464)
T PLN02509 161 LSAVTHLIKNGE--EIVA--GDDVYGGSDRLLSQVVPRSGVVVKRVNTTNLDEVAAAIGPQTKLVWL-------E-SPTN 228 (464)
T ss_pred HHHHHHHhCCCC--EEEE--cCCchhhHHHHHHHHHHHCCeEEEEeCCCCHHHHHHhCCcCCeEEEE-------E-CCCC
Confidence 333334444454 5665 456665532 32233567899888764322222221 123333322 1 2445
Q ss_pred ccccH----HHHHHHHhcCCeEEE
Q 017293 267 KIGTY----SLALCAKFHNILFYV 286 (374)
Q Consensus 267 kiGT~----~lA~~Ak~~~vPvyV 286 (374)
..|.. .++-+||.||++++|
T Consensus 229 PtG~i~Dl~~I~~lAk~~g~~lIV 252 (464)
T PLN02509 229 PRQQISDIRKIAEMAHAQGALVLV 252 (464)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEE
Confidence 55554 356679999999987
No 260
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=21.29 E-value=3.3e+02 Score=25.13 Aligned_cols=37 Identities=19% Similarity=-0.045 Sum_probs=26.2
Q ss_pred CCCCEEEEcceeeecCCCe----------ecccccHHHHHHHHhcCC
Q 017293 246 GRVSAVIVGADRVAANGDT----------ANKIGTYSLALCAKFHNI 282 (374)
Q Consensus 246 ~~vd~VlvGAd~i~~nG~v----------~nkiGT~~lA~~Ak~~~v 282 (374)
.++|.|+--|-....+++. .|-.||..+.-+|+.+++
T Consensus 56 ~~~D~Vvh~a~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~ 102 (292)
T TIGR01777 56 EGADAVINLAGEPIADKRWTEERKQEIRDSRIDTTRALVEAIAAAEQ 102 (292)
T ss_pred CCCCEEEECCCCCcccccCCHHHHHHHHhcccHHHHHHHHHHHhcCC
Confidence 6789888666433222221 378889999999999987
No 261
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=21.08 E-value=9e+02 Score=24.73 Aligned_cols=87 Identities=16% Similarity=0.162 Sum_probs=45.8
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcc-hHhHHHHHhhCCCCeEEEc-c--hHHHHHHhcCCCCEEEEcceeeecCCCeecc
Q 017293 192 VIRALHSEGVLERAYCSETRPFNQG-SRLTAFELVHDRIPATLIA-D--SAAAALMKDGRVSAVIVGADRVAANGDTANK 267 (374)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~eG-~~l~a~~L~~~GI~vtlI~-D--sav~~~m~~~~vd~VlvGAd~i~~nG~v~nk 267 (374)
++....+.|. +|++... .+.+ ..+..+.|.+.|+.++++. + ..+-..+ +++...|++ +.+..-.+.+..
T Consensus 95 al~~ll~~Gd--~Vi~~~~--~y~~t~~~~~~~l~~~Gi~v~~vd~~d~~~l~~~i-~~~TklV~~--e~~~np~g~v~D 167 (433)
T PRK08134 95 AIATLMGAGS--HIVASSA--LYGGSHNLLHYTLRRFGIETTFVKPGDIDGWRAAI-RPNTRLLFG--ETLGNPGLEVLD 167 (433)
T ss_pred HHHHHhCCCC--EEEEeCC--ccHHHHHHHHHHHhhCCeEEEEECCCCHHHHHHhc-CCCCeEEEE--ECCCcccCcccC
Confidence 3444444443 6666543 2323 2333455678899998885 2 2344444 244444433 222211111122
Q ss_pred cccHHHHHHHHhcCCeEEEe
Q 017293 268 IGTYSLALCAKFHNILFYVA 287 (374)
Q Consensus 268 iGT~~lA~~Ak~~~vPvyV~ 287 (374)
--.++-+||.+|++++|=
T Consensus 168 --i~~I~~la~~~gi~livD 185 (433)
T PRK08134 168 --IPTVAAIAHEAGVPLLVD 185 (433)
T ss_pred --HHHHHHHHHHcCCEEEEE
Confidence 245788999999999873
No 262
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=21.03 E-value=8.3e+02 Score=24.29 Aligned_cols=84 Identities=13% Similarity=0.189 Sum_probs=42.1
Q ss_pred HHHCCCeeEEEEecCCCCCcch-HhHHHHHhhCCCCeEEEcch---HHHHHHhcCCCCEEEEcceeeecCCCeecccccH
Q 017293 196 LHSEGVLERAYCSETRPFNQGS-RLTAFELVHDRIPATLIADS---AAAALMKDGRVSAVIVGADRVAANGDTANKIGTY 271 (374)
Q Consensus 196 a~~~g~~~~V~v~EsrP~~eG~-~l~a~~L~~~GI~vtlI~Ds---av~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~ 271 (374)
..+.| -+|++.. |.+.+. ++....+...|++++.+.-. .+-..+ +++...|++- .---..|.+.. --
T Consensus 81 ll~~G--d~Vl~~~--~~y~~~~~~~~~~~~~~G~~v~~vd~~d~~~le~~i-~~~tklv~le-~psnptg~v~d---l~ 151 (378)
T TIGR01329 81 LLNNG--DEIIAGD--DLYGGTDRLLTQVVPRSGVVVVHVDTTDLDKVKAAL-GPKTKLVLLE-SPTNPLQKIVD---IR 151 (378)
T ss_pred HhCCC--CEEEEcC--CCchHHHHHHHHHHHHcCcEEEEeCCCCHHHHHHhc-CcCceEEEEE-CCCCCCCeeec---HH
Confidence 44444 3566653 445443 22222356689999888632 232233 1334333322 11111232222 24
Q ss_pred HHHHHHHhcCCeEEEec
Q 017293 272 SLALCAKFHNILFYVAA 288 (374)
Q Consensus 272 ~lA~~Ak~~~vPvyV~a 288 (374)
.++-+||++|++++|=+
T Consensus 152 ~I~~la~~~g~~vivD~ 168 (378)
T TIGR01329 152 KISEMAHAQNALVVVDN 168 (378)
T ss_pred HHHHHHHHcCCEEEEEC
Confidence 56778999999888743
No 263
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=20.95 E-value=4.2e+02 Score=21.61 Aligned_cols=60 Identities=18% Similarity=0.084 Sum_probs=37.0
Q ss_pred HhhC-CCCeEEEcchHHHHHHh--cCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccC
Q 017293 224 LVHD-RIPATLIADSAAAALMK--DGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPL 290 (374)
Q Consensus 224 L~~~-GI~vtlI~Dsav~~~m~--~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~ 290 (374)
|.+. |+++....|+...+.+. -.+=|.+|+ |..+| +..-+..++-.||+.|.|+++++..
T Consensus 21 l~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~I~----iS~SG---~t~~~~~~~~~a~~~g~~vi~iT~~ 83 (120)
T cd05710 21 LKKESKLPVFVYNAAEFLHTGPKRLTEKSVVIL----ASHSG---NTKETVAAAKFAKEKGATVIGLTDD 83 (120)
T ss_pred HHHhcCCceEEEcHHHHhhcCcccCCCCcEEEE----EeCCC---CChHHHHHHHHHHHcCCeEEEEECC
Confidence 4443 78887777765443320 033355543 44556 3445667778899999999998753
No 264
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=20.84 E-value=55 Score=26.21 Aligned_cols=40 Identities=15% Similarity=-0.041 Sum_probs=30.4
Q ss_pred CCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEE
Q 017293 246 GRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFY 285 (374)
Q Consensus 246 ~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvy 285 (374)
+.+=..|..||+|+-=++-=+.-|...=..+|+..|+||+
T Consensus 51 ~~~l~~L~~cD~i~~l~gWe~S~GA~~E~~~A~~lGl~V~ 90 (92)
T PF14359_consen 51 RICLAMLSDCDAIYMLPGWENSRGARLEHELAKKLGLPVI 90 (92)
T ss_pred HHHHHHHHhCCEEEEcCCcccCcchHHHHHHHHHCCCeEe
Confidence 3333445566666665668888999999999999999987
No 265
>PRK12388 fructose-1,6-bisphosphatase II-like protein; Reviewed
Probab=20.78 E-value=1.7e+02 Score=29.00 Aligned_cols=45 Identities=16% Similarity=0.075 Sum_probs=32.4
Q ss_pred HHHHCCC---eeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHH
Q 017293 195 ALHSEGV---LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALM 243 (374)
Q Consensus 195 ~a~~~g~---~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m 243 (374)
.|...|| .+.|+|++ ||+++. | -.++++.|..+.+|+|.=++..+
T Consensus 145 vA~algk~v~dltV~vLd-RpRH~~--l-I~eiR~~GarI~Li~DGDVa~ai 192 (321)
T PRK12388 145 VARALGKPLDKLRMVTLD-KPRLSA--A-IEEATQLGVKVFALPDGDVAASV 192 (321)
T ss_pred HHHHcCCChhHeEEEEEc-CchHHH--H-HHHHHHcCCeEEEeccccHHHHH
Confidence 3444455 46677766 899975 4 46899999999999996664433
No 266
>TIGR03458 YgfH_subfam succinate CoA transferases. A closely related clade not included in this family are the Ach1p proteins of fungi which are acetyl-CoA hydrolases. This name has been applied to many of the proteins detected by this model, possibly erroneously.
Probab=20.76 E-value=9.9e+02 Score=25.11 Aligned_cols=66 Identities=11% Similarity=0.042 Sum_probs=41.2
Q ss_pred HHHhhCC-CCeEEEcchHHHHHHhcC---CCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEec
Q 017293 222 FELVHDR-IPATLIADSAAAALMKDG---RVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAA 288 (374)
Q Consensus 222 ~~L~~~G-I~vtlI~Dsav~~~m~~~---~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a 288 (374)
+++.+.| +.++-..-+.+...++.. ++|.+++=+...=++|.+.=- ++......+-...+.|+|-+
T Consensus 87 Rkai~~G~i~y~P~~ls~ip~~lrag~~g~~DValI~VSp~D~~Gn~slg-~s~~~~~~aa~aAk~VIvEV 156 (485)
T TIGR03458 87 RKKINAGEVMYVDMHLSHVAQQLRYGFLGKVDVAVIEAAAITEDGRIIPT-SSVGNNPTFLELADKVIVEV 156 (485)
T ss_pred HHHHHcCCCEEEeccHHHHHHHHHhcCCCCCCEEEEEEEeCCCCceEEEe-cccchHHHHHHhCCEEEEEE
Confidence 4566666 567777778888877532 799999999988889876333 33323333333344555543
No 267
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=20.71 E-value=87 Score=28.67 Aligned_cols=47 Identities=21% Similarity=0.142 Sum_probs=34.9
Q ss_pred CCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccCcc
Q 017293 246 GRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTS 292 (374)
Q Consensus 246 ~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~K 292 (374)
.+.|+||-|--.=..-|.-+.-.||...|+-|..+|||=+.+.-.+.
T Consensus 90 ~~pDLViSGiN~G~N~g~~v~~SGTVgAA~ea~~~GipaIA~S~~~~ 136 (196)
T PF01975_consen 90 KKPDLVISGINHGANLGTDVLYSGTVGAAMEAALRGIPAIAVSLDSD 136 (196)
T ss_dssp SS-SEEEEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEEESS
T ss_pred CCCCEEEECCCCCccCCcCcccccHHHHHHHHHHcCCCeEEEecccc
Confidence 46999999986655556668899999999999999999998754443
No 268
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=20.62 E-value=9.2e+02 Score=24.64 Aligned_cols=93 Identities=17% Similarity=0.034 Sum_probs=50.9
Q ss_pred ccHHHHHHHHHHCCCeeEEEEe-cC---------CCCCcchHhHHHHHhhCCCCeEEEcch----H-------------H
Q 017293 187 GTALGVIRALHSEGVLERAYCS-ET---------RPFNQGSRLTAFELVHDRIPATLIADS----A-------------A 239 (374)
Q Consensus 187 ~tv~~~l~~a~~~g~~~~V~v~-Es---------rP~~eG~~l~a~~L~~~GI~vtlI~Ds----a-------------v 239 (374)
++...++..+...++.+-++-. +. ++..-|...++..|.+.||+.+++.-. . +
T Consensus 75 ~~~~~~~~~~~~~~~Pvll~a~~~~~~~~~~~~~~~s~~g~~~~~~~l~r~gi~~~~v~g~~~d~~~~~~i~~~~raa~~ 154 (452)
T cd00578 75 GPAKMWIAGLSELRKPVLLLATQFNREIPDFMNLNQSACGLREFGNILARLGIPFKVVYGHWKDEDVLRKIESWARAAAA 154 (452)
T ss_pred ccHHHHHHHHHhcCCCEEEEeCCCCCCCCchhhhhcchhhhHHHHHHHHHcCCceeEEECCCCCHHHHHHHHHHHHHHHH
Confidence 4444455555555566555543 32 344457776778899999999987422 1 1
Q ss_pred HHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEe
Q 017293 240 AALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (374)
Q Consensus 240 ~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~ 287 (374)
-.-| ++....++|.. ..| ++...+.- ..+-+.+|+.|--+
T Consensus 155 ~~~l--r~~rig~iG~~---~~~-~~~~~~d~--~~~~~~fG~~v~~i 194 (452)
T cd00578 155 VATL--RGLRVGRFGDR---MRG-MAVTEGDK--VLAQIKFGVSVEYL 194 (452)
T ss_pred HHHh--hcCceEEECCC---cCC-cEEecCCH--HHHHHhhCeEEEEE
Confidence 1223 55667788842 233 33322221 23356678777543
No 269
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=20.62 E-value=4.6e+02 Score=22.36 Aligned_cols=78 Identities=12% Similarity=0.095 Sum_probs=44.4
Q ss_pred EecCCCCCcchHhHHHHHhhCCCCeEEEc----chHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhc-C
Q 017293 207 CSETRPFNQGSRLTAFELVHDRIPATLIA----DSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFH-N 281 (374)
Q Consensus 207 v~EsrP~~eG~~l~a~~L~~~GI~vtlI~----Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~-~ 281 (374)
+.++.-..-|..+.+..|...|.+|+++- -.-+.....+.++|.|.+.+ .+|.....+....-.+-.+.. +
T Consensus 10 ~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~lS~----~~~~~~~~~~~~~~~L~~~~~~~ 85 (137)
T PRK02261 10 VIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIETDADAILVSS----LYGHGEIDCRGLREKCIEAGLGD 85 (137)
T ss_pred eCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcC----ccccCHHHHHHHHHHHHhcCCCC
Confidence 33444333477777777888888888753 22333344567899888765 234444555444444433323 6
Q ss_pred CeEEEec
Q 017293 282 ILFYVAA 288 (374)
Q Consensus 282 vPvyV~a 288 (374)
+++++-.
T Consensus 86 ~~i~vGG 92 (137)
T PRK02261 86 ILLYVGG 92 (137)
T ss_pred CeEEEEC
Confidence 6666653
No 270
>PRK10481 hypothetical protein; Provisional
Probab=20.57 E-value=6.3e+02 Score=23.68 Aligned_cols=106 Identities=14% Similarity=0.014 Sum_probs=57.3
Q ss_pred cEEEEecCCC--ccccccccc-----HHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcch-----
Q 017293 170 FSVLTHCNTG--SLATAGYGT-----ALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADS----- 237 (374)
Q Consensus 170 ~~ILT~~~sg--~lat~g~~t-----v~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Ds----- 237 (374)
+.|+..|.+- .|.+.+.-. .+.-+..|...|+++-|++..... +.+. .+...+.|+++.+...+
T Consensus 92 d~ivl~Ctgdfp~l~a~r~~l~~P~~~i~~lv~Al~~g~riGVitP~~~q---i~~~-~~kw~~~G~~v~~~~aspy~~~ 167 (224)
T PRK10481 92 DVILLLCTGEFPSLTARNAILLEPSRILPPLVAAIVGGHQVGVIVPVEEQ---LAQQ-AQKWQVLQKPPVFALASPYHGS 167 (224)
T ss_pred CEEEEEecCCCCCccccCccccCchhhHHHHHHHhcCCCeEEEEEeCHHH---HHHH-HHHHHhcCCceeEeecCCCCCC
Confidence 7888877652 232211111 122234555568889999765332 2232 34556669998876622
Q ss_pred --HHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEE
Q 017293 238 --AAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYV 286 (374)
Q Consensus 238 --av~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV 286 (374)
.+...- ... .--|||.|+.++.=++. -..+.+.+..|+||+-
T Consensus 168 ~~~l~~aa--~~L--~~~gaD~Ivl~C~G~~~---~~~~~le~~lg~PVI~ 211 (224)
T PRK10481 168 EEELIDAG--KEL--LDQGADVIVLDCLGYHQ---RHRDLLQKALDVPVLL 211 (224)
T ss_pred HHHHHHHH--HHh--hcCCCCEEEEeCCCcCH---HHHHHHHHHHCcCEEc
Confidence 111111 111 12466666665543333 4477889999999984
No 271
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=20.54 E-value=2.6e+02 Score=28.53 Aligned_cols=30 Identities=20% Similarity=0.335 Sum_probs=19.0
Q ss_pred EEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecC
Q 017293 171 SVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSET 210 (374)
Q Consensus 171 ~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~Es 210 (374)
.||..+.+ -.+..+++.|++.|. +|+++.+
T Consensus 4 kili~g~g--------~~~~~~~~aa~~lG~--~vv~~~~ 33 (449)
T TIGR00514 4 KILIANRG--------EIALRILRACKELGI--KTVAVHS 33 (449)
T ss_pred eEEEeCCC--------HHHHHHHHHHHHcCC--eEEEEEC
Confidence 57777542 245678899988765 4555544
No 272
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=20.51 E-value=1.9e+02 Score=28.11 Aligned_cols=94 Identities=17% Similarity=0.128 Sum_probs=62.4
Q ss_pred cccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhH---HHHH-hhCCCCeEEEcchHHH--HHHhcCCCCEEEEcceeee
Q 017293 186 YGTALGVIRALHSEGVLERAYCSETRPFNQGSRLT---AFEL-VHDRIPATLIADSAAA--ALMKDGRVSAVIVGADRVA 259 (374)
Q Consensus 186 ~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~---a~~L-~~~GI~vtlI~Dsav~--~~m~~~~vd~VlvGAd~i~ 259 (374)
+-++.++++.|.+.+..+-+-+.++.=.+-|.... ++.+ .+.++||.+-.|.+.- .++ .-++ .|.++|.
T Consensus 28 ~e~~~avi~AAe~~~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~~~vPV~lHLDH~~~~e~i~--~Ai~---~GftSVM 102 (283)
T PRK07998 28 LETTISILNAIERSGLPNFIQIAPTNAQLSGYDYIYEIVKRHADKMDVPVSLHLDHGKTFEDVK--QAVR---AGFTSVM 102 (283)
T ss_pred HHHHHHHHHHHHHhCCCEEEECcHhHHhhCCHHHHHHHHHHHHHHCCCCEEEECcCCCCHHHHH--HHHH---cCCCEEE
Confidence 35678899999887765544443332122343321 2223 4679999999998743 333 2233 3889999
Q ss_pred cCCCee----cccccHHHHHHHHhcCCeE
Q 017293 260 ANGDTA----NKIGTYSLALCAKFHNILF 284 (374)
Q Consensus 260 ~nG~v~----nkiGT~~lA~~Ak~~~vPv 284 (374)
-||+-. |--=|..+.-.|+.+|+||
T Consensus 103 ~DgS~l~~eeNi~~T~~vve~Ah~~gv~V 131 (283)
T PRK07998 103 IDGAALPFEENIAFTKEAVDFAKSYGVPV 131 (283)
T ss_pred EeCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 999854 6667888999999999996
No 273
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=20.50 E-value=5.4e+02 Score=24.14 Aligned_cols=88 Identities=17% Similarity=0.132 Sum_probs=43.7
Q ss_pred HHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHH---------HHHhcCCCCEEEEcceeeecC
Q 017293 191 GVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA---------ALMKDGRVSAVIVGADRVAAN 261 (374)
Q Consensus 191 ~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~---------~~m~~~~vd~VlvGAd~i~~n 261 (374)
.++..+...| -+|++. +|.+.+.. ..+...|+.+..++...-+ .....+++..|++-. .-...
T Consensus 74 ~~~~~~~~~g--~~vl~~--~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~-~~~~t 145 (350)
T cd00609 74 LLLRALLNPG--DEVLVP--DPTYPGYE---AAARLAGAEVVPVPLDEEGGFLLDLELLEAAKTPKTKLLYLNN-PNNPT 145 (350)
T ss_pred HHHHHhCCCC--CEEEEc--CCCchhHH---HHHHHCCCEEEEEecccccCCccCHHHHHhhcCccceEEEEEC-CCCCC
Confidence 3444444333 345553 35554432 2345567666665543211 112235666666544 33334
Q ss_pred CCeecccc-cHHHHHHHHhcCCeEEEe
Q 017293 262 GDTANKIG-TYSLALCAKFHNILFYVA 287 (374)
Q Consensus 262 G~v~nkiG-T~~lA~~Ak~~~vPvyV~ 287 (374)
|.+. ... -..++-+|+.+|+++++=
T Consensus 146 G~~~-~~~~l~~l~~~~~~~~~~~ivD 171 (350)
T cd00609 146 GAVL-SEEELEELAELAKKHGILIISD 171 (350)
T ss_pred Cccc-CHHHHHHHHHHHHhCCeEEEEe
Confidence 5433 222 223446789999998874
No 274
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=20.45 E-value=89 Score=28.09 Aligned_cols=97 Identities=9% Similarity=0.026 Sum_probs=44.1
Q ss_pred HHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcch---HHHHHHhcCCCCEEEEcceeeecCCCeec
Q 017293 190 LGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADS---AAAALMKDGRVSAVIVGADRVAANGDTAN 266 (374)
Q Consensus 190 ~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Ds---av~~~m~~~~vd~VlvGAd~i~~nG~v~n 266 (374)
..+++.+.+.|..++|+++++.-.+-.. .+-+.|....+-..+..+. .+.++=.....|.++|---+.--=+.++|
T Consensus 17 ~~ll~~L~~~g~~V~vi~T~~A~~fi~~-~~l~~l~~~~v~~~~~~~~~~~~~~hi~l~~~aD~~vVaPaSanTlakiA~ 95 (177)
T TIGR02113 17 ADLTSQLTKLGYDVTVLMTQAATQFITP-LTLQVLSKNPVHLDVMDEHDPKVINHIELAKKADLFLVAPASANTIAHLAH 95 (177)
T ss_pred HHHHHHHHHCCCEEEEEEChHHHhhccH-hhHHHHhCCCeEeeccccccCCCcccceechhhCEEEEEeCCHHHHHHHHc
Confidence 3567777777888888888864332111 1122344332212333211 11122112567777664322111112222
Q ss_pred ccccHHHHHHHHh--cCCeEEEe
Q 017293 267 KIGTYSLALCAKF--HNILFYVA 287 (374)
Q Consensus 267 kiGT~~lA~~Ak~--~~vPvyV~ 287 (374)
=+.--.+..+|.. .++|++++
T Consensus 96 GiaDnLlt~~a~a~~~~~pv~i~ 118 (177)
T TIGR02113 96 GFADNIVTSVALALPPETPKLIA 118 (177)
T ss_pred CcCCcHHHHHHHHcCCCCCEEEE
Confidence 2333333333333 48999986
No 275
>PRK11778 putative inner membrane peptidase; Provisional
Probab=20.24 E-value=8.7e+02 Score=24.20 Aligned_cols=82 Identities=21% Similarity=0.181 Sum_probs=45.7
Q ss_pred EEEEecCCCCCc--chHhHHH---HHhhCCCCeEEEcch---HHHHHHhcCCCCEEEEcceeeecCCCeecccccH----
Q 017293 204 RAYCSETRPFNQ--GSRLTAF---ELVHDRIPATLIADS---AAAALMKDGRVSAVIVGADRVAANGDTANKIGTY---- 271 (374)
Q Consensus 204 ~V~v~EsrP~~e--G~~l~a~---~L~~~GI~vtlI~Ds---av~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~---- 271 (374)
.|++-=..|... |..+++. ++++.|+|++...|. +.+|+|+ .-+|.++..-.+++ .-+|-.
T Consensus 125 aVvLridSpGG~v~~s~~a~~~l~~lr~~~kpVva~v~~~AASggY~iA-saAD~I~A~P~a~v------GSIGVi~~~~ 197 (330)
T PRK11778 125 EVLLRLESPGGVVHGYGLAASQLQRLRDAGIPLTVAVDKVAASGGYMMA-CVADKIIAAPFAIV------GSIGVVAQIP 197 (330)
T ss_pred eEEEEEeCCCCchhHHHHHHHHHHHHHhcCCCEEEEECCchhhHHHHHH-HhCCEEEECCCCeE------Eeeeeeeecc
Confidence 455444557663 3233333 467789999986653 3477773 45666655544443 333332
Q ss_pred HHHHHHHhcCCeEEEe-ccCcc
Q 017293 272 SLALCAKFHNILFYVA-APLTS 292 (374)
Q Consensus 272 ~lA~~Ak~~~vPvyV~-a~~~K 292 (374)
.+--+-+.+||-+.++ +..||
T Consensus 198 ~~~~lLeKlGI~~evi~aG~yK 219 (330)
T PRK11778 198 NFHRLLKKHDIDVELHTAGEYK 219 (330)
T ss_pred CHHHHHHHCCCceEEEEecCcc
Confidence 2233456789888754 34455
No 276
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=20.23 E-value=3.9e+02 Score=20.21 Aligned_cols=33 Identities=12% Similarity=0.131 Sum_probs=16.6
Q ss_pred HhhCCCCeEEEcch--HHHHHHhcCCCCEEEEcceee
Q 017293 224 LVHDRIPATLIADS--AAAALMKDGRVSAVIVGADRV 258 (374)
Q Consensus 224 L~~~GI~vtlI~Ds--av~~~m~~~~vd~VlvGAd~i 258 (374)
+.+.|++++...-. ...... ..+|.++++.+-=
T Consensus 24 ~~~~gi~~~~~~~~~~~~~~~~--~~~D~il~~~~i~ 58 (90)
T PF02302_consen 24 LKELGIEVEVSAGSILEVEEIA--DDADLILLTPQIA 58 (90)
T ss_dssp HHHTTECEEEEEEETTTHHHHH--TT-SEEEEEESSG
T ss_pred HHhccCceEEEEeccccccccc--CCCcEEEEcCccc
Confidence 44445544443333 223334 6788888877543
No 277
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=20.20 E-value=6.4e+02 Score=22.64 Aligned_cols=31 Identities=6% Similarity=0.015 Sum_probs=21.2
Q ss_pred HHHHhhCCCCeEEEcchHHHHHHhcCCCCEEEE
Q 017293 221 AFELVHDRIPATLIADSAAAALMKDGRVSAVIV 253 (374)
Q Consensus 221 a~~L~~~GI~vtlI~Dsav~~~m~~~~vd~Vlv 253 (374)
++.+++.|+++..|+-..-..+- +.+|.+|.
T Consensus 131 ~~~ak~~g~~iI~iT~~~~s~l~--~~ad~~l~ 161 (192)
T PRK00414 131 IEAARAKGMKVITLTGKDGGKMA--GLADIEIR 161 (192)
T ss_pred HHHHHHCCCeEEEEeCCCCChhH--HhCCEEEE
Confidence 45567889998888865544444 56777764
No 278
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=20.18 E-value=7.6e+02 Score=24.30 Aligned_cols=43 Identities=12% Similarity=0.098 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHH
Q 017293 79 FSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKA 121 (374)
Q Consensus 79 ~~~~~~el~~~l~~~~~~L~~~RPt~v~l~nai~~~~~~i~~~ 121 (374)
+...+.|-.+.|+.....+..+.+..-++..++++.++..++.
T Consensus 93 P~~~S~er~~~l~a~GAevi~t~~~~g~~~~a~~~a~el~~~~ 135 (300)
T COG0031 93 PETMSQERRKLLRALGAEVILTPGAPGNMKGAIERAKELAAEI 135 (300)
T ss_pred CCCCCHHHHHHHHHcCCEEEEcCCCCCchHHHHHHHHHHHHhC
Confidence 3355678888888888888877775556888988887777655
No 279
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=20.07 E-value=5.9e+02 Score=25.68 Aligned_cols=78 Identities=19% Similarity=0.120 Sum_probs=41.4
Q ss_pred eeEEEEecCCCCCcchHhHHHHH-hhCCCCeEEEcch-------HHHHHHhcCCCCEEEEcceeeecCCCeecccccHHH
Q 017293 202 LERAYCSETRPFNQGSRLTAFEL-VHDRIPATLIADS-------AAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSL 273 (374)
Q Consensus 202 ~~~V~v~EsrP~~eG~~l~a~~L-~~~GI~vtlI~Ds-------av~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~l 273 (374)
.-+|++.+ |.+....-....+ ...|+++..++-. .+-..+ .+++..|++.. . ...| .+.. --.+
T Consensus 154 g~~Vlv~~--~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~d~~~l~~~i-~~~t~~v~l~~-p-n~tG-~v~~--l~~I 225 (447)
T PRK00451 154 RKKVLVSG--AVHPEYREVLKTYLKGQGIEVVEVPYEDGVTDLEALEAAV-DDDTAAVVVQY-P-NFFG-VIED--LEEI 225 (447)
T ss_pred CCEEEEeC--ccCHHHHHHHHHHHHhCCcEEEEecCCCCCCCHHHHHHhc-CCCeEEEEEEC-C-CCCC-eeCC--HHHH
Confidence 34677754 4443222222222 2468888888632 122223 24555555543 2 3344 3333 3457
Q ss_pred HHHHHhcCCeEEEe
Q 017293 274 ALCAKFHNILFYVA 287 (374)
Q Consensus 274 A~~Ak~~~vPvyV~ 287 (374)
+-+||++|++++|.
T Consensus 226 ~~~a~~~~~~~iv~ 239 (447)
T PRK00451 226 AEIAHAGGALFIVG 239 (447)
T ss_pred HHHHHHCCCEEEEE
Confidence 78999999999883
No 280
>COG2014 Uncharacterized conserved protein [Function unknown]
Probab=20.03 E-value=7.5e+02 Score=23.37 Aligned_cols=72 Identities=18% Similarity=0.212 Sum_probs=47.4
Q ss_pred CeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhc
Q 017293 201 VLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFH 280 (374)
Q Consensus 201 ~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~ 280 (374)
.+|.||+-|-.|.+--.+ ..+|.....++ +++|.+++.|.+++ || |.-.-+.=...
T Consensus 134 ek~~v~~~er~~~~pkr~--------------t~~d~~e~~iL--P~~Dvii~SaStlv-N~-------T~d~~Ld~ak~ 189 (250)
T COG2014 134 EKFEVYVFERNPKLPKRG--------------TLSDTLEYQIL--PEVDVIIASASTLV-NG-------TLDMILDRAKK 189 (250)
T ss_pred hheEEEEeccCccCcccc--------------cccchhhhhhc--ccccEEEEechhhh-cC-------cHHHHHhhhcc
Confidence 479999999887653322 24688888899 99999999888774 55 44443333333
Q ss_pred CCeEEEeccCccccCC
Q 017293 281 NILFYVAAPLTSIDLT 296 (374)
Q Consensus 281 ~vPvyV~a~~~K~~~~ 296 (374)
-+=++...|+-.+-|.
T Consensus 190 ak~vvl~GPTa~l~pe 205 (250)
T COG2014 190 AKLVVLTGPTAQLLPE 205 (250)
T ss_pred CcEEEEeCCCcccchh
Confidence 4455566666555443
Done!