Query 017293
Match_columns 374
No_of_seqs 207 out of 1439
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 12:05:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017293.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017293hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yvk_A Methylthioribose-1-phos 100.0 5.2E-97 2E-101 731.7 31.3 345 11-373 26-371 (374)
2 2a0u_A Initiation factor 2B; S 100.0 9.9E-96 3E-100 724.6 40.0 362 7-372 10-382 (383)
3 1t5o_A EIF2BD, translation ini 100.0 2.5E-95 8E-100 715.5 33.9 339 13-372 3-341 (351)
4 1t9k_A Probable methylthioribo 100.0 5.7E-95 2E-99 711.9 33.8 338 13-371 7-344 (347)
5 3a11_A Translation initiation 100.0 2.8E-82 9.7E-87 621.1 29.7 313 34-371 14-327 (338)
6 1vb5_A Translation initiation 100.0 2.2E-70 7.7E-75 524.3 26.0 270 42-360 5-274 (276)
7 3ecs_A Translation initiation 100.0 2.5E-67 8.4E-72 509.2 20.5 285 59-371 20-305 (315)
8 1w2w_B 5-methylthioribose-1-ph 100.0 3.2E-54 1.1E-58 390.7 11.7 169 200-370 2-191 (191)
9 1w2w_A 5-methylthioribose-1-ph 100.0 8.3E-45 2.8E-49 332.0 18.7 187 12-203 2-208 (211)
10 1uj6_A Ribose 5-phosphate isom 98.2 3.6E-06 1.2E-10 77.7 9.0 128 148-308 7-141 (227)
11 3kwm_A Ribose-5-phosphate isom 97.6 0.00023 7.8E-09 65.4 9.4 129 149-307 12-141 (224)
12 1m0s_A Ribose-5-phosphate isom 97.6 0.00015 5.2E-09 66.4 8.0 130 149-307 6-136 (219)
13 2f8m_A Ribose 5-phosphate isom 97.6 0.0003 1E-08 65.4 9.9 130 148-307 11-148 (244)
14 1lk5_A D-ribose-5-phosphate is 97.5 0.00036 1.2E-08 64.3 9.2 129 149-307 6-140 (229)
15 3l7o_A Ribose-5-phosphate isom 97.3 0.0011 3.6E-08 61.0 9.7 128 149-307 4-136 (225)
16 1o8b_A Ribose 5-phosphate isom 97.2 0.00016 5.6E-09 66.2 3.6 129 149-307 6-135 (219)
17 3hhe_A Ribose-5-phosphate isom 97.1 0.002 7E-08 60.0 9.2 127 150-307 28-158 (255)
18 2pjm_A Ribose-5-phosphate isom 96.9 0.0059 2E-07 56.0 10.9 128 149-307 6-139 (226)
19 1xtz_A Ribose-5-phosphate isom 96.7 0.0045 1.5E-07 58.1 8.9 131 149-307 21-165 (264)
20 3uw1_A Ribose-5-phosphate isom 96.7 0.0079 2.7E-07 55.6 9.9 132 150-307 15-147 (239)
21 2yvq_A Carbamoyl-phosphate syn 86.8 2.2 7.6E-05 35.7 7.8 81 190-286 40-130 (143)
22 1b93_A Protein (methylglyoxal 85.0 2.3 8E-05 36.3 7.1 74 202-287 39-119 (152)
23 3ixq_A Ribose-5-phosphate isom 78.1 6.5 0.00022 35.7 7.8 125 151-307 8-139 (226)
24 3rrl_B Succinyl-COA:3-ketoacid 76.2 5.5 0.00019 35.6 6.7 98 150-266 2-111 (207)
25 4gmk_A Ribose-5-phosphate isom 75.4 8.3 0.00028 35.0 7.7 122 150-306 8-138 (228)
26 1vmd_A MGS, methylglyoxal synt 75.0 5.9 0.0002 34.6 6.4 74 202-287 55-135 (178)
27 1poi_B Glutaconate coenzyme A- 74.1 10 0.00035 35.0 8.2 95 149-265 7-116 (260)
28 2xw6_A MGS, methylglyoxal synt 72.1 6.1 0.00021 32.9 5.6 73 202-286 31-110 (134)
29 2lpm_A Two-component response 70.0 6.6 0.00023 31.8 5.3 80 200-289 6-87 (123)
30 3s3t_A Nucleotide-binding prot 69.9 38 0.0013 26.6 10.7 60 224-287 78-145 (146)
31 3tqr_A Phosphoribosylglycinami 68.8 15 0.00052 32.9 7.8 71 185-259 14-96 (215)
32 4ds3_A Phosphoribosylglycinami 60.7 19 0.00064 32.1 6.8 67 185-255 16-94 (209)
33 1wv2_A Thiazole moeity, thiazo 60.1 27 0.00094 32.3 7.9 114 168-292 72-198 (265)
34 2gm3_A Unknown protein; AT3G01 59.4 19 0.00065 29.7 6.4 65 224-292 96-166 (175)
35 3i6i_A Putative leucoanthocyan 58.3 55 0.0019 30.2 10.1 103 170-288 11-118 (346)
36 3da8_A Probable 5'-phosphoribo 58.0 22 0.00076 31.7 6.8 71 185-259 21-102 (215)
37 3f6p_A Transcriptional regulat 57.6 23 0.00079 26.9 6.2 79 203-290 3-82 (120)
38 3hgm_A Universal stress protei 57.4 26 0.0009 27.6 6.7 61 223-287 78-147 (147)
39 3e8x_A Putative NAD-dependent 55.9 34 0.0012 29.6 7.7 107 168-291 20-132 (236)
40 1meo_A Phosophoribosylglycinam 55.4 28 0.00096 30.8 7.0 67 185-255 9-87 (209)
41 3ic5_A Putative saccharopine d 55.3 63 0.0021 24.1 9.7 96 169-291 5-103 (118)
42 3cwc_A Putative glycerate kina 55.0 6.4 0.00022 38.5 2.9 49 241-293 283-331 (383)
43 3p9x_A Phosphoribosylglycinami 54.5 43 0.0015 29.8 8.1 70 185-259 11-94 (211)
44 1mjh_A Protein (ATP-binding do 54.4 37 0.0013 27.4 7.3 61 224-288 92-158 (162)
45 3dlo_A Universal stress protei 54.2 85 0.0029 25.3 10.8 62 223-287 86-154 (155)
46 1jmv_A USPA, universal stress 54.1 75 0.0026 24.7 9.4 59 224-288 73-137 (141)
47 2dum_A Hypothetical protein PH 54.1 27 0.00093 28.5 6.4 61 224-288 87-155 (170)
48 3tnj_A Universal stress protei 53.8 67 0.0023 25.3 8.7 43 242-288 104-146 (150)
49 3fdx_A Putative filament prote 53.6 77 0.0026 24.6 10.4 42 241-287 100-142 (143)
50 3rsc_A CALG2; TDP, enediyne, s 52.7 36 0.0012 32.0 7.9 83 190-293 38-152 (415)
51 3h5i_A Response regulator/sens 52.3 53 0.0018 25.4 7.7 82 202-291 5-88 (140)
52 2yva_A DNAA initiator-associat 51.7 1.1E+02 0.0037 25.7 12.4 38 246-290 108-145 (196)
53 3dqp_A Oxidoreductase YLBE; al 51.5 21 0.00072 30.6 5.5 51 238-290 56-106 (219)
54 2pln_A HP1043, response regula 51.5 52 0.0018 25.3 7.5 78 200-290 16-95 (137)
55 3ia7_A CALG4; glycosysltransfe 51.4 38 0.0013 31.5 7.7 82 191-293 23-136 (402)
56 3rht_A (gatase1)-like protein; 51.0 10 0.00035 34.9 3.5 81 204-293 6-91 (259)
57 3tsa_A SPNG, NDP-rhamnosyltran 50.6 32 0.0011 32.1 7.1 34 242-288 109-142 (391)
58 3gt7_A Sensor protein; structu 49.3 52 0.0018 26.1 7.3 82 201-291 6-91 (154)
59 1jw9_B Molybdopterin biosynthe 49.2 48 0.0016 29.8 7.7 110 153-288 21-153 (249)
60 4egb_A DTDP-glucose 4,6-dehydr 49.0 37 0.0013 31.1 7.1 115 168-290 23-149 (346)
61 3kcq_A Phosphoribosylglycinami 48.6 50 0.0017 29.4 7.5 71 185-259 17-95 (215)
62 4fzr_A SSFS6; structural genom 46.2 42 0.0014 31.5 7.1 55 169-236 15-70 (398)
63 3k6m_A Succinyl-COA:3-ketoacid 45.6 68 0.0023 32.1 8.8 101 148-266 261-373 (481)
64 2qzj_A Two-component response 45.5 56 0.0019 25.3 6.8 80 202-290 4-84 (136)
65 3eh7_A 4-hydroxybutyrate COA-t 45.4 2.2E+02 0.0075 27.9 12.4 150 148-355 197-399 (434)
66 3trj_A Phosphoheptose isomeras 44.8 1.5E+02 0.0051 25.4 13.0 37 246-289 113-149 (201)
67 1zgz_A Torcad operon transcrip 44.6 72 0.0024 23.7 7.1 79 203-290 3-82 (122)
68 3d3u_A 4-hydroxybutyrate COA-t 44.1 2.4E+02 0.0081 27.6 13.3 156 148-357 194-398 (439)
69 1jkx_A GART;, phosphoribosylgl 44.0 63 0.0022 28.5 7.5 70 185-259 9-92 (212)
70 3idf_A USP-like protein; unive 43.0 69 0.0024 24.8 7.0 59 223-287 74-137 (138)
71 3h4t_A Glycosyltransferase GTF 42.7 34 0.0012 32.6 5.9 16 274-289 109-124 (404)
72 3rrl_A Succinyl-COA:3-ketoacid 42.6 58 0.002 29.4 7.1 99 156-266 13-170 (235)
73 3eod_A Protein HNR; response r 42.5 77 0.0026 23.9 7.1 82 201-291 6-89 (130)
74 2rjn_A Response regulator rece 42.3 56 0.0019 25.8 6.4 82 201-291 6-89 (154)
75 2a9o_A Response regulator; ess 41.7 67 0.0023 23.7 6.5 78 204-290 3-81 (120)
76 3t6k_A Response regulator rece 41.4 95 0.0032 23.9 7.6 81 202-291 4-88 (136)
77 2qxy_A Response regulator; reg 40.9 61 0.0021 25.0 6.3 80 202-291 4-85 (142)
78 3g0t_A Putative aminotransfera 40.9 1.1E+02 0.0036 28.9 9.2 84 198-287 129-221 (437)
79 1xhf_A DYE resistance, aerobic 40.3 1E+02 0.0035 22.9 7.4 79 203-290 4-83 (123)
80 4ggj_A Mitochondrial cardiolip 39.4 54 0.0018 28.3 6.2 48 187-236 72-119 (196)
81 3cvj_A Putative phosphoheptose 39.4 1.8E+02 0.0062 25.4 9.9 31 221-253 128-169 (243)
82 3isl_A Purine catabolism prote 39.3 2.3E+02 0.0079 26.0 11.7 87 192-287 78-172 (416)
83 3qli_A Coenzyme A transferase; 39.2 75 0.0026 31.7 7.8 98 155-265 30-158 (455)
84 3gl9_A Response regulator; bet 39.0 79 0.0027 23.8 6.6 79 203-290 3-85 (122)
85 3m6m_D Sensory/regulatory prot 38.8 45 0.0016 26.2 5.2 81 201-290 13-99 (143)
86 2z5l_A Tylkr1, tylactone synth 38.0 1.6E+02 0.0054 29.4 10.2 98 191-290 274-391 (511)
87 2wm3_A NMRA-like family domain 37.1 1.6E+02 0.0053 26.2 9.3 108 170-291 6-116 (299)
88 3i42_A Response regulator rece 36.6 93 0.0032 23.3 6.7 81 202-291 3-87 (127)
89 2j48_A Two-component sensor ki 36.4 73 0.0025 23.1 5.9 78 204-290 3-84 (119)
90 3mt0_A Uncharacterized protein 36.0 2.3E+02 0.0078 25.1 10.8 95 192-292 27-131 (290)
91 1mvo_A PHOP response regulator 35.9 96 0.0033 23.5 6.7 79 203-290 4-84 (136)
92 3grc_A Sensor protein, kinase; 35.8 1.1E+02 0.0037 23.3 7.1 81 202-291 6-90 (140)
93 1x92_A APC5045, phosphoheptose 35.7 1.9E+02 0.0066 24.1 11.1 33 221-255 133-168 (199)
94 3sho_A Transcriptional regulat 35.6 1.9E+02 0.0064 23.9 13.5 63 221-290 58-123 (187)
95 3rqi_A Response regulator prot 35.6 1E+02 0.0036 25.2 7.3 81 202-291 7-89 (184)
96 3cpq_A 50S ribosomal protein L 35.4 45 0.0015 26.2 4.5 38 242-287 32-69 (110)
97 2ri0_A Glucosamine-6-phosphate 35.3 1.9E+02 0.0065 25.2 9.3 107 152-270 12-139 (234)
98 2zay_A Response regulator rece 35.3 83 0.0028 24.3 6.3 83 200-291 6-92 (147)
99 3loq_A Universal stress protei 34.9 1.8E+02 0.006 25.9 9.2 89 196-288 194-289 (294)
100 2rdm_A Response regulator rece 34.8 91 0.0031 23.4 6.3 82 202-291 5-89 (132)
101 1tq8_A Hypothetical protein RV 34.0 84 0.0029 25.6 6.3 61 223-287 89-156 (163)
102 3cg0_A Response regulator rece 33.2 58 0.002 24.9 4.9 84 200-291 7-92 (140)
103 2r6j_A Eugenol synthase 1; phe 32.9 1.1E+02 0.0038 27.5 7.6 97 171-287 13-113 (318)
104 3ruf_A WBGU; rossmann fold, UD 32.8 1.3E+02 0.0043 27.5 8.0 110 168-290 24-151 (351)
105 3qli_A Coenzyme A transferase; 32.7 3.8E+02 0.013 26.5 13.3 20 338-358 403-422 (455)
106 1zh2_A KDP operon transcriptio 32.7 97 0.0033 22.8 6.1 78 204-290 3-81 (121)
107 3cg4_A Response regulator rece 32.5 1E+02 0.0034 23.6 6.3 82 201-291 6-91 (142)
108 1o1y_A Conserved hypothetical 32.4 47 0.0016 29.6 4.7 87 200-289 10-101 (239)
109 1byr_A Protein (endonuclease); 31.9 1.1E+02 0.0038 24.4 6.7 48 188-235 41-88 (155)
110 3hv2_A Response regulator/HD d 31.9 95 0.0032 24.3 6.2 83 200-291 12-96 (153)
111 1jbe_A Chemotaxis protein CHEY 31.5 1.3E+02 0.0046 22.3 6.8 81 201-290 3-88 (128)
112 3ip3_A Oxidoreductase, putativ 31.5 99 0.0034 28.6 7.0 52 201-255 23-75 (337)
113 1a9x_A Carbamoyl phosphate syn 31.4 88 0.003 34.4 7.6 62 220-287 977-1043(1073)
114 2yv1_A Succinyl-COA ligase [AD 31.4 26 0.0009 32.6 2.9 104 170-286 72-179 (294)
115 4dad_A Putative pilus assembly 31.4 25 0.00086 27.6 2.5 82 200-290 18-104 (146)
116 3n0v_A Formyltetrahydrofolate 31.2 1E+02 0.0034 28.6 6.9 69 185-259 99-179 (286)
117 3n0r_A Response regulator; sig 31.1 1.7E+02 0.0058 26.5 8.5 96 187-290 142-242 (286)
118 1m3s_A Hypothetical protein YC 30.9 1.3E+02 0.0043 25.0 7.1 32 221-254 99-130 (186)
119 3dzz_A Putative pyridoxal 5'-p 30.7 1.4E+02 0.005 27.2 8.1 88 192-287 101-199 (391)
120 3cnb_A DNA-binding response re 30.6 1.3E+02 0.0044 22.8 6.7 82 201-291 7-94 (143)
121 3lk7_A UDP-N-acetylmuramoylala 30.6 1.5E+02 0.0053 28.7 8.6 71 169-255 9-80 (451)
122 2w48_A Sorbitol operon regulat 30.6 71 0.0024 29.6 5.8 96 150-256 92-213 (315)
123 2fr1_A Erythromycin synthase, 30.1 2.2E+02 0.0077 28.0 9.7 97 192-290 242-361 (486)
124 3otg_A CALG1; calicheamicin, T 30.1 2E+02 0.007 26.5 9.1 55 169-236 20-75 (412)
125 1jeo_A MJ1247, hypothetical pr 29.9 1.3E+02 0.0046 24.7 7.0 32 221-255 102-133 (180)
126 2pl1_A Transcriptional regulat 29.8 1.2E+02 0.004 22.3 6.1 78 204-290 2-81 (121)
127 1qyd_A Pinoresinol-lariciresin 29.8 2.9E+02 0.01 24.4 11.1 103 170-287 5-114 (313)
128 2bfw_A GLGA glycogen synthase; 29.6 1.7E+02 0.0058 23.9 7.7 103 168-287 35-145 (200)
129 1dbw_A Transcriptional regulat 29.5 1.6E+02 0.0056 21.8 7.0 79 203-290 4-84 (126)
130 3lte_A Response regulator; str 29.4 1.7E+02 0.0057 21.9 7.1 54 201-256 5-59 (132)
131 3mm4_A Histidine kinase homolo 29.2 1.4E+02 0.0047 25.2 7.1 81 201-290 60-160 (206)
132 1mb3_A Cell division response 29.2 1.5E+02 0.005 21.9 6.6 78 204-290 3-84 (124)
133 2cb1_A O-acetyl homoserine sul 29.1 2.6E+02 0.0087 26.3 9.7 76 203-286 96-175 (412)
134 3lou_A Formyltetrahydrofolate 29.1 98 0.0033 28.8 6.4 69 185-259 104-184 (292)
135 1qyc_A Phenylcoumaran benzylic 29.0 1.6E+02 0.0054 26.2 7.8 99 170-287 5-111 (308)
136 2oas_A ATOA, 4-hydroxybutyrate 28.6 1.3E+02 0.0044 29.5 7.6 95 156-265 11-128 (436)
137 3auf_A Glycinamide ribonucleot 28.6 1.6E+02 0.0056 26.1 7.7 68 187-259 33-114 (229)
138 2qr3_A Two-component system re 28.5 62 0.0021 24.7 4.4 86 202-291 3-90 (140)
139 2oqr_A Sensory transduction pr 28.5 1.2E+02 0.004 25.7 6.5 81 202-291 4-85 (230)
140 3nhm_A Response regulator; pro 28.5 1.4E+02 0.0047 22.4 6.4 80 202-291 4-87 (133)
141 3s2u_A UDP-N-acetylglucosamine 28.4 2.6E+02 0.0089 26.0 9.6 81 189-287 19-121 (365)
142 2z08_A Universal stress protei 28.4 85 0.0029 24.3 5.2 43 241-287 93-136 (137)
143 2jl1_A Triphenylmethane reduct 28.3 1E+02 0.0034 27.2 6.3 89 192-290 16-107 (287)
144 3olq_A Universal stress protei 28.3 1.3E+02 0.0045 27.0 7.2 63 224-290 82-151 (319)
145 2gas_A Isoflavone reductase; N 28.2 2.2E+02 0.0076 25.1 8.7 98 171-287 4-110 (307)
146 1qgn_A Protein (cystathionine 28.1 3.3E+02 0.011 26.3 10.5 85 192-286 145-235 (445)
147 2ywr_A Phosphoribosylglycinami 28.1 1.5E+02 0.005 26.1 7.2 68 187-259 12-93 (216)
148 3jx9_A Putative phosphoheptose 28.0 50 0.0017 28.3 3.9 36 168-208 77-112 (170)
149 3l9w_A Glutathione-regulated p 27.9 87 0.003 30.5 6.1 85 186-288 12-102 (413)
150 3kyj_B CHEY6 protein, putative 27.8 1.1E+02 0.0036 23.7 5.7 82 199-289 10-95 (145)
151 3heb_A Response regulator rece 27.6 2E+02 0.0067 22.3 7.4 83 201-292 3-100 (152)
152 2gkg_A Response regulator homo 27.5 1.1E+02 0.0036 22.6 5.5 77 203-287 6-86 (127)
153 2o8r_A Polyphosphate kinase; s 27.5 68 0.0023 33.8 5.5 47 187-234 384-432 (705)
154 2yv2_A Succinyl-COA synthetase 27.4 39 0.0013 31.5 3.3 103 170-285 73-179 (297)
155 2gwr_A DNA-binding response re 27.0 1.2E+02 0.004 26.1 6.3 81 202-291 5-86 (238)
156 4gx0_A TRKA domain protein; me 26.9 77 0.0026 31.8 5.7 73 203-289 349-441 (565)
157 3dhn_A NAD-dependent epimerase 26.9 1.3E+02 0.0044 25.4 6.5 103 170-290 5-112 (227)
158 1kgs_A DRRD, DNA binding respo 26.8 1.7E+02 0.0059 24.4 7.3 80 203-291 3-84 (225)
159 1to6_A Glycerate kinase; glyce 26.7 27 0.00093 33.9 2.1 48 241-293 274-321 (371)
160 3av3_A Phosphoribosylglycinami 26.6 2.1E+02 0.0071 25.0 7.9 68 187-259 14-95 (212)
161 3lkv_A Uncharacterized conserv 26.5 1.1E+02 0.0038 27.7 6.3 58 223-289 164-228 (302)
162 3jte_A Response regulator rece 26.5 1.9E+02 0.0065 22.0 7.0 80 203-291 4-87 (143)
163 1oi7_A Succinyl-COA synthetase 26.4 31 0.0011 32.0 2.5 104 170-286 66-173 (288)
164 3kax_A Aminotransferase, class 26.4 2.2E+02 0.0076 25.8 8.5 86 192-286 98-194 (383)
165 3snk_A Response regulator CHEY 26.3 56 0.0019 25.1 3.7 82 200-290 12-96 (135)
166 3c3m_A Response regulator rece 26.3 2E+02 0.007 21.8 7.2 79 203-290 4-86 (138)
167 3hvy_A Cystathionine beta-lyas 26.3 1.8E+02 0.0062 28.2 8.2 89 192-287 108-218 (427)
168 1k68_A Phytochrome response re 26.1 2E+02 0.007 21.4 7.4 80 203-291 3-95 (140)
169 1ys7_A Transcriptional regulat 25.7 2E+02 0.0067 24.2 7.5 82 202-292 7-90 (233)
170 3ab8_A Putative uncharacterize 25.7 2.3E+02 0.0078 24.6 8.2 58 221-287 205-267 (268)
171 2xhz_A KDSD, YRBH, arabinose 5 25.6 1.6E+02 0.0054 24.2 6.7 33 221-255 116-148 (183)
172 3hdg_A Uncharacterized protein 25.4 1E+02 0.0035 23.4 5.2 82 201-291 6-89 (137)
173 1vim_A Hypothetical protein AF 25.4 1.9E+02 0.0066 24.4 7.4 31 221-253 109-139 (200)
174 2xhz_A KDSD, YRBH, arabinose 5 25.4 91 0.0031 25.8 5.1 63 221-290 68-132 (183)
175 2jba_A Phosphate regulon trans 25.3 93 0.0032 23.2 4.8 80 203-291 3-86 (127)
176 3kht_A Response regulator; PSI 25.2 2.1E+02 0.0071 21.8 7.0 81 202-291 5-91 (144)
177 3loq_A Universal stress protei 25.0 1.2E+02 0.004 27.1 6.1 66 223-292 94-165 (294)
178 3qjg_A Epidermin biosynthesis 24.9 48 0.0016 28.6 3.2 95 189-287 21-116 (175)
179 3ndn_A O-succinylhomoserine su 24.9 3.7E+02 0.013 25.5 10.1 85 192-286 112-201 (414)
180 3h1g_A Chemotaxis protein CHEY 24.7 2E+02 0.0069 21.5 6.8 80 202-290 5-90 (129)
181 1qkk_A DCTD, C4-dicarboxylate 24.7 1.5E+02 0.0051 23.1 6.1 81 202-291 3-85 (155)
182 1lc5_A COBD, L-threonine-O-3-p 24.6 1.4E+02 0.0046 27.4 6.6 78 203-286 99-184 (364)
183 2zcu_A Uncharacterized oxidore 24.6 1.8E+02 0.0061 25.4 7.3 87 192-290 15-104 (286)
184 3ec7_A Putative dehydrogenase; 24.4 3.3E+02 0.011 25.3 9.4 95 192-294 38-151 (357)
185 3c1o_A Eugenol synthase; pheny 24.4 3.2E+02 0.011 24.3 9.1 99 170-287 5-111 (321)
186 3r0j_A Possible two component 24.3 1.7E+02 0.0056 25.3 6.9 83 200-291 21-105 (250)
187 1yio_A Response regulatory pro 24.2 1.8E+02 0.0062 24.0 6.9 81 202-291 4-86 (208)
188 1s8n_A Putative antiterminator 24.1 1.6E+02 0.0053 24.4 6.5 82 201-291 12-95 (205)
189 1u2p_A Ptpase, low molecular w 24.0 1.1E+02 0.0036 25.6 5.2 78 170-254 5-89 (163)
190 3r8n_K 30S ribosomal protein S 24.0 78 0.0027 25.5 4.1 46 189-237 55-101 (117)
191 1qo0_D AMIR; binding protein, 24.0 43 0.0015 27.9 2.8 77 201-290 11-88 (196)
192 2hqr_A Putative transcriptiona 24.0 1.8E+02 0.0061 24.4 6.9 75 204-291 2-78 (223)
193 3npg_A Uncharacterized DUF364 23.9 2E+02 0.0068 26.0 7.4 92 168-297 115-206 (249)
194 3j21_Z 50S ribosomal protein L 23.8 91 0.0031 23.8 4.4 37 243-287 27-63 (99)
195 3lqk_A Dipicolinate synthase s 23.7 75 0.0026 27.9 4.3 109 173-287 10-129 (201)
196 1zud_1 Adenylyltransferase THI 23.6 3.8E+02 0.013 23.7 10.9 111 153-288 18-150 (251)
197 2b4a_A BH3024; flavodoxin-like 23.6 2E+02 0.0068 21.7 6.6 82 200-290 13-98 (138)
198 3h14_A Aminotransferase, class 23.6 3.5E+02 0.012 24.7 9.4 86 192-286 107-199 (391)
199 1oc2_A DTDP-glucose 4,6-dehydr 23.5 83 0.0028 28.7 4.9 94 192-288 20-124 (348)
200 3nbm_A PTS system, lactose-spe 23.5 27 0.00094 27.6 1.2 33 246-287 52-84 (108)
201 2vyc_A Biodegradative arginine 23.4 1.8E+02 0.0061 30.6 7.9 86 204-292 2-96 (755)
202 2h1q_A Hypothetical protein; Z 23.3 2.4E+02 0.0083 25.8 7.9 68 202-296 160-227 (270)
203 1ex2_A Protein MAF; structural 23.3 2.4E+02 0.0084 24.3 7.5 38 251-288 65-105 (189)
204 4dq6_A Putative pyridoxal phos 23.2 2E+02 0.0069 26.2 7.6 85 192-286 106-202 (391)
205 3i16_A Aluminum resistance pro 23.2 2.9E+02 0.0098 26.7 8.9 90 191-287 106-218 (427)
206 1tk9_A Phosphoheptose isomeras 23.2 3.1E+02 0.011 22.4 12.2 38 246-290 109-146 (188)
207 3m2p_A UDP-N-acetylglucosamine 23.1 1E+02 0.0035 27.7 5.3 99 171-289 4-108 (311)
208 3h2s_A Putative NADH-flavin re 23.0 1.3E+02 0.0044 25.3 5.7 88 191-289 15-105 (224)
209 1qv9_A F420-dependent methylen 22.8 1.3E+02 0.0045 27.5 5.7 61 196-258 60-124 (283)
210 1xq6_A Unknown protein; struct 22.7 3E+02 0.01 23.1 8.3 106 169-290 4-133 (253)
211 2z1d_A Hydrogenase expression/ 22.7 77 0.0026 30.6 4.4 49 234-288 179-227 (372)
212 3crn_A Response regulator rece 22.6 1.9E+02 0.0065 21.7 6.3 79 203-290 4-84 (132)
213 2ord_A Acoat, acetylornithine 22.6 4.5E+02 0.015 24.0 10.4 23 264-286 192-222 (397)
214 2z61_A Probable aspartate amin 22.5 2.5E+02 0.0084 25.6 8.0 82 192-286 105-188 (370)
215 3rss_A Putative uncharacterize 22.3 5.8E+02 0.02 25.3 11.2 105 169-286 52-157 (502)
216 1y8q_A Ubiquitin-like 1 activa 22.3 4.8E+02 0.017 24.3 13.7 110 153-287 26-156 (346)
217 3o6p_A Peptide ABC transporter 22.2 1.1E+02 0.0038 26.3 5.2 66 189-254 83-156 (229)
218 2nu8_A Succinyl-COA ligase [AD 22.2 53 0.0018 30.3 3.2 103 170-285 66-172 (288)
219 3jvi_A Protein tyrosine phosph 22.2 89 0.0031 26.1 4.4 79 170-253 5-89 (161)
220 3o1l_A Formyltetrahydrofolate 22.1 2.7E+02 0.0093 25.9 8.1 70 185-260 114-195 (302)
221 1eg5_A Aminotransferase; PLP-d 22.1 3.2E+02 0.011 24.6 8.7 77 203-286 90-176 (384)
222 2nvv_A Acetyl-COA hydrolase/tr 22.0 5.1E+02 0.017 25.8 10.6 100 156-266 10-138 (506)
223 3a10_A Response regulator; pho 21.9 2.1E+02 0.0072 20.7 6.2 78 204-290 3-82 (116)
224 3dfz_A SIRC, precorrin-2 dehyd 21.5 87 0.003 27.9 4.3 93 168-288 30-122 (223)
225 2ejb_A Probable aromatic acid 21.3 1.1E+02 0.0038 26.4 4.9 93 190-287 18-124 (189)
226 3to5_A CHEY homolog; alpha(5)b 21.1 78 0.0027 25.5 3.7 82 200-290 10-96 (134)
227 2ahu_A Putative enzyme YDIF; C 21.0 6.1E+02 0.021 25.4 11.0 43 247-289 180-227 (531)
228 3cz5_A Two-component response 20.9 2E+02 0.0067 22.3 6.1 81 202-291 5-89 (153)
229 3ilh_A Two component response 20.8 2.7E+02 0.0093 20.9 7.8 83 200-291 7-102 (146)
230 4id9_A Short-chain dehydrogena 20.7 1.4E+02 0.0048 27.1 5.8 100 168-290 18-126 (347)
231 1fmt_A Methionyl-tRNA FMet for 20.7 4.3E+02 0.015 24.5 9.3 71 189-259 15-94 (314)
232 1m3s_A Hypothetical protein YC 20.7 1.1E+02 0.0038 25.4 4.7 59 222-290 57-115 (186)
233 4eu9_A Succinyl-COA:acetate co 20.7 2.2E+02 0.0075 28.5 7.6 111 155-276 18-158 (514)
234 3nra_A Aspartate aminotransfer 20.4 4E+02 0.014 24.3 9.1 76 204-286 128-217 (407)
235 3ehe_A UDP-glucose 4-epimerase 20.3 1.2E+02 0.004 27.3 5.1 53 236-290 54-114 (313)
236 1xr4_A Putative citrate lyase 20.1 5.4E+02 0.018 25.7 10.4 120 155-287 50-203 (509)
237 3s2u_A UDP-N-acetylglucosamine 20.1 4.6E+02 0.016 24.2 9.5 95 168-287 179-278 (365)
238 2zyj_A Alpha-aminodipate amino 20.0 2.9E+02 0.0098 25.4 8.0 78 204-286 117-201 (397)
239 3hzh_A Chemotaxis response reg 20.0 1.7E+02 0.0058 23.0 5.6 82 200-290 34-120 (157)
No 1
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=100.00 E-value=5.2e-97 Score=731.71 Aligned_cols=345 Identities=41% Similarity=0.605 Sum_probs=327.5
Q ss_pred CCc-eeEEEeCCeEEEEecCCCCCeEEEEEecChHHHHHHHHhccccCcHHHHHHHHHHHHHHHhhccCCCCCHHHHHHH
Q 017293 11 NSL-QSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASF 89 (374)
Q Consensus 11 ~~~-~~i~~~~~~l~ilDQ~~lP~e~~~~~~~~~~~v~~aI~~m~VrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~ 89 (374)
-++ ++|+|+++.|+|||||+||++++|++|+++++++++||+|+|||||+||++|++++++++++. .+.+.++|.+.
T Consensus 26 m~~~~~~~~~~~~l~ilDq~~lP~~~~~~~~~~~~~~~~aIk~m~VrGApaIgiaaa~~l~l~~~~~--~~~~~~~l~~~ 103 (374)
T 2yvk_A 26 FAVPRSVEWKETAITILNQQKLPDETEYLELTTKEDVFDAIVTLKVRGAPAIGITAAFGLALAAKDI--ETDNVTEFRRR 103 (374)
T ss_dssp GGSCCSEEECSSCEEEECGGGTTTCCCEEEECSHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHTTC--CCSCHHHHHHH
T ss_pred CcccCceEEeCCEEEEEecCCCCCeEEEEEeCCHHHHHHHHHhCccCCcHHHHHHHHHHHHHHHHhc--cCCCHHHHHHH
Confidence 457 899999999999999999999999999999999999999999999999999999999999876 35678999999
Q ss_pred HHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCC
Q 017293 90 LGNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSK 169 (374)
Q Consensus 90 l~~~~~~L~~~RPt~v~l~nai~~~~~~i~~~~~~~~~~~e~~~~l~~~~~~~~~e~~~a~~~I~~~~~~~i~~~~~~~~ 169 (374)
|++++++|.++|||++||+|+++++++.+++. .+.+++++.+++.+++|.+|+..++++|+++|+++|. +|
T Consensus 104 l~~~~~~L~~aRPtavnL~~ai~r~~~~i~~~----~~~~~~k~~l~~~a~~~~~e~~~~~~~I~~~g~~~I~-----~g 174 (374)
T 2yvk_A 104 LEDIKQYLNSSRPTAINLSWALERLSHSVENA----ISVNEAKTNLVHEAIQIQVEDEETCRLIGQNALQLFK-----KG 174 (374)
T ss_dssp HHHHHHHHHTTCSSCHHHHHHHHHHHHHTTTC----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCC-----TT
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CC
Confidence 99999999999999999999999999887532 4788999999999999999999999999999999999 89
Q ss_pred cEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCCCC
Q 017293 170 FSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVS 249 (374)
Q Consensus 170 ~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~vd 249 (374)
++||||||||+|||+||||++++|+.|+++|++|+|||+||||++||.|+|||+|.+.|||||+|+|||++++|++++||
T Consensus 175 ~~ILThcnsg~Lat~g~gTal~~l~~A~~~gk~~~V~v~EtRP~~qG~rltA~eL~~~GIpvtlI~Dsa~~~~M~~~~Vd 254 (374)
T 2yvk_A 175 DRIMTICNAGSIATSRYGTALAPFYLAKQKDLGLHIYACETRPVLQGSRLTAWELMQGGIDVTLITDSMAAHTMKEKQIS 254 (374)
T ss_dssp CEEEECSCCSTTTSSSSCSTTHHHHHHHHTTCCCEEEEECCTTTTHHHHTHHHHHHTTTCEEEEECGGGHHHHHHHTTCC
T ss_pred CEEEEecCCCccccCCCcHHHHHHHHHHHcCCEEEEEEeCCCCccccHHHHHHHHHHcCCCEEEEehhHHHHHhhhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888899
Q ss_pred EEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCccccCCCc
Q 017293 250 AVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGI 329 (374)
Q Consensus 250 ~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~K~~~~~~~~~~i~ie~r~~~ev~~~~~~~~~~~~~~~~ 329 (374)
+||+|||+|++||+++||+|||++|++||+|||||||+||+||||+.++.|.++++|+|+|+|+.... |.++.++++
T Consensus 255 ~ViVGAD~V~aNG~v~NKiGTy~lAl~Ak~~~vPfyV~ap~~k~d~~~~~g~~i~iEer~~~Ev~~~~---g~~~~~~~v 331 (374)
T 2yvk_A 255 AVIVGADRIAKNGDTANKIGTYGLAILANAFDIPFFVAAPLSTFDTKVKCGADIPIEERDPEEVRQIS---GVRTAPSNV 331 (374)
T ss_dssp EEEECCSEEETTCCEEEETTHHHHHHHHHHTTCCEEEECCGGGEETTCSSGGGSCCCBCCTHHHHEET---TEECSCTTC
T ss_pred EEEECccEEecCCCEEecccHHHHHHHHHHcCCCEEEecccceeCccCCCccccccccCCHHHhcccC---CceecCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999876 566778999
Q ss_pred eeecceeeecCCCCccEEEeCCCCcccCCCcCccccHHHHHhhh
Q 017293 330 SVWNPAFDVTPANLITGIITEKQGVVTKAGADDAFDIKDFIQKT 373 (374)
Q Consensus 330 ~v~np~fD~tP~~lIt~iITE~~Gi~~p~~~~~~~~~~~~~~~~ 373 (374)
+++||+||+|||+|||+||||+ |+++|+. . ++|.++|.++
T Consensus 332 ~v~NPaFDvTP~~lIt~iITE~-Gv~~P~~-~--~~l~~~~~~~ 371 (374)
T 2yvk_A 332 PVFNPAFDITPHDLISGIITEK-GIMTGNY-E--EEIEQLFKGE 371 (374)
T ss_dssp CBCCBSEEEECGGGCSEEEETT-EEECSCH-H--HHHHHHTCC-
T ss_pred ceeCcceeccCHHHCCEEeccC-CccCcch-H--HHHHHHhhhc
Confidence 9999999999999999999999 9999984 3 6899998765
No 2
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5
Probab=100.00 E-value=9.9e-96 Score=724.60 Aligned_cols=362 Identities=49% Similarity=0.759 Sum_probs=334.5
Q ss_pred cCCCC--CceeEEEeCCeEEEEecCCCCCeEEEEEecChHHHHHHHHhccccCcHHHHHHHHHHHHHHHhhc--cCCCCC
Q 017293 7 STDNN--SLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNL--NAFSGT 82 (374)
Q Consensus 7 ~~~~~--~~~~i~~~~~~l~ilDQ~~lP~e~~~~~~~~~~~v~~aI~~m~VrGA~ai~~~aa~~l~~~~~~~--~~~~~~ 82 (374)
|+.++ ++++|+|+++.|+|||||+||++++|++|+++++++++||+|+|||||+||++|++++++++++. ..++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~l~ildq~~lP~~~~~~~~~~~~~~~~aIk~m~VrGApaIgiaaa~~l~l~~~~~~~~~~~~~ 89 (383)
T 2a0u_A 10 MSKPHHATLESIKYTPGSLRLLDQRKLPLETVFDDVLTVEDIWSAIKEMRVRGAPAIAVSAALGIAVATQRKAANGELKS 89 (383)
T ss_dssp CCCCSSCCCCSEEEETTEEEEECTTTTTTCCCEEEECSHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred hcCCccccccceEEECCEEEEEecCCCCCceEEEEcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHhhcccccCCC
Confidence 44443 48899999999999999999999999999999999999999999999999999999999998864 224558
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 017293 83 AADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQ 162 (374)
Q Consensus 83 ~~el~~~l~~~~~~L~~~RPt~v~l~nai~~~~~~i~~~~~~~~~~~e~~~~l~~~~~~~~~e~~~a~~~I~~~~~~~i~ 162 (374)
.++|.+.|++++++|.++|||++||+|++++|++.+++.. ...+.+++++.+++.+++|.+|+..++++|+++|+++|.
T Consensus 90 ~~~l~~~l~~~~~~L~~aRPtavnL~na~~r~~~~i~~~~-~~~~~~~~k~~l~~~a~~i~~e~~~~~~~I~~~g~~~I~ 168 (383)
T 2a0u_A 90 GREVQTFLLTSCDFVMTSRPTAVNLFNCLRDLKAQVDKLD-PTKAAAEVAQAFVELAEAVYTNDVAFNEGIMRHGAAHIL 168 (383)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSCSHHHHHHHHHHHHHHHSC-TTSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8999999999999999999999999999999999887532 124678899999999999999999999999999999998
Q ss_pred hhh---cCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHH
Q 017293 163 NQL---KNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAA 239 (374)
Q Consensus 163 ~~~---~~~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav 239 (374)
+.. ..+|++||||||||+|||+|||||+++|+.|+++|++|+|||+||||++||.|+|||+|.+.|||||+|+|||+
T Consensus 169 ~~~~~~~~~g~~ILThcnsg~Lat~g~gTal~~l~~A~~~gk~~~V~v~EtRP~~qGarltA~eL~~~GIpvtlI~Dsa~ 248 (383)
T 2a0u_A 169 AAAKAEGRDKVSILTICNTGALATSRYGTALGVVRQLFYDGKLERVYACETRPWNQGARLTVYECVQEDIPCTLICDGAA 248 (383)
T ss_dssp HHHHHTTCSSEEEEECSCCSTTTSSSSCSHHHHHHHHHHTTCEEEEEEECCTTTTHHHHTHHHHHHHTTCCEEEECGGGH
T ss_pred hhccccCCCCCEEEEecCCcchhcCCCchHHHHHHHHHHcCCeEEEEEeCCCCccchHHHHHHHHHHcCCCEEEEehhHH
Confidence 321 11579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccCccccCCCCCCCccccccCCcccceecc-C
Q 017293 240 AALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSR-G 318 (374)
Q Consensus 240 ~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~K~~~~~~~~~~i~ie~r~~~ev~~~~-~ 318 (374)
+++|++++||+||||||+|++||+++||+|||++|++||+|||||||+||+||||+.++.|.++++|+|+|+|+...+ +
T Consensus 249 ~~~M~~~~Vd~ViVGAD~V~aNG~v~NKiGTy~lAl~Ak~~~vPfyV~ap~~k~d~~~~~g~~i~iEer~~~Ev~~~~~~ 328 (383)
T 2a0u_A 249 SSLMLNRKIDAVVVGADRICQNGDTANKIGTYNLAVSAKFHGVKLYVAAPTTTLDVKTASGNHVEIEEREPTEITTNLVT 328 (383)
T ss_dssp HHHHHHSCCCEEEECCSEECTTCCEEEETTHHHHHHHHHHTTCCEEEECCGGGBCTTCCSGGGSCCCBCCTHHHHBCTTT
T ss_pred HHHhhcCCCCEEEECccEEecCCCEeecccHHHHHHHHHHcCCCEEEeCCcceecCcCCCccccccccCCHHHhcccccC
Confidence 999988889999999999999999999999999999999999999999999999999999999999999999999873 2
Q ss_pred CCCccccCCC--ceeecceeeecCCCCcc-EEEeCCCCcccCCCcCccccHHHHHhh
Q 017293 319 GLGEQVAASG--ISVWNPAFDVTPANLIT-GIITEKQGVVTKAGADDAFDIKDFIQK 372 (374)
Q Consensus 319 ~~~~~~~~~~--~~v~np~fD~tP~~lIt-~iITE~~Gi~~p~~~~~~~~~~~~~~~ 372 (374)
|.++.+++ ++++||+||+|||+||| +||||+ |+++|++...-|+++++++|
T Consensus 329 --g~~~a~~~~~v~v~NPaFDvTP~~lIt~~iITE~-Gv~~p~~~~~~~~~~~~~~~ 382 (383)
T 2a0u_A 329 --KQRVVADGPHLSIWNPVFDITPSELITGGIITEK-GVQAPAASAPYYDIASIIAQ 382 (383)
T ss_dssp --CCBCSCCCTTEEECCBSEEEECGGGCCSEEECSS-CEECCCSSSSCCCHHHHHHC
T ss_pred --CceecCCCCceeeecccccccChHHCCcEEEccC-CccCCccchhhcCHHHHhhc
Confidence 55566788 99999999999999999 999999 99999888889999999998
No 3
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5
Probab=100.00 E-value=2.5e-95 Score=715.48 Aligned_cols=339 Identities=40% Similarity=0.604 Sum_probs=321.9
Q ss_pred ceeEEEeCCeEEEEecCCCCCeEEEEEecChHHHHHHHHhccccCcHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHH
Q 017293 13 LQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFLGN 92 (374)
Q Consensus 13 ~~~i~~~~~~l~ilDQ~~lP~e~~~~~~~~~~~v~~aI~~m~VrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l~~ 92 (374)
+++|+|+++ |+|||||+||++++|++|+++++++++||+|+|||||+||++|+++|++++++. .+.+.++|.+.|++
T Consensus 3 ~~~~~~~~~-l~~ldq~~lP~~~~~~~~~~~~~~~~aIk~m~VrGApai~iaaa~~l~l~~~~~--~~~~~~~l~~~l~~ 79 (351)
T 1t5o_A 3 LRSIFWDDG-LKLIDQTKLPEKLEVIECRNVEELADAIKKLAVRGAPALEAAGAYGIALAARER--EFADVDELKEHLKK 79 (351)
T ss_dssp CCSEEESSS-EEEECGGGTTTCCCEEEECSHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHTTSS--CCSCHHHHHHHHHH
T ss_pred ccceEeeCC-EEEEecCCCCCeEEEEEeCCHHHHHHHHHhCCcCCcHHHHHHHHHHHHHHHHhc--cCCCHHHHHHHHHH
Confidence 678999988 999999999999999999999999999999999999999999999999999875 34578999999999
Q ss_pred HHHHHHhCCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCcEE
Q 017293 93 KLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSV 172 (374)
Q Consensus 93 ~~~~L~~~RPt~v~l~nai~~~~~~i~~~~~~~~~~~e~~~~l~~~~~~~~~e~~~a~~~I~~~~~~~i~~~~~~~~~~I 172 (374)
++++|.++|||++||+|++++|++.+++ ..+.+++++.+++.+++|.+|+..++++|+++|+++|. +|++|
T Consensus 80 ~~~~L~~aRPtav~l~~a~~~~~~~i~~----~~~~~~~k~~l~~~~~~~~~e~~~~~~~I~~~g~~~I~-----~g~~I 150 (351)
T 1t5o_A 80 AADFLASTRPTAVNLFVGIERALNAALK----GESVEEVKELALREAEKLAEEDVERNRKMGEYGAELLE-----DGDVV 150 (351)
T ss_dssp HHHHHHTTCTTCHHHHHHHHHHHHHHTT----CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-----TTCEE
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHhh----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCEE
Confidence 9999999999999999999999988854 25788999999999999999999999999999999999 89999
Q ss_pred EEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCCCCEEE
Q 017293 173 LTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVI 252 (374)
Q Consensus 173 LT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~vd~Vl 252 (374)
|||||||+|||+|||||+++|+.|+++|++|+|||+||||++||.|+|||+|.+.|||||+|+|||++++|++++||+||
T Consensus 151 LThcnsg~lat~g~gtal~~l~~A~~~gk~~~V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~M~~~~Vd~Vi 230 (351)
T 1t5o_A 151 LTYCNAGRLATVDWGTALGVVRSAVEQGKEIRVIACETRPLNQGSRLTCWELMEDGIDVTLITDSMVGIVMQKGMVDKVI 230 (351)
T ss_dssp EECSCCSSSSSSSSCSHHHHHHHHHHTTCCCEEEEECCTTTTHHHHTHHHHHHHTTCCEEEECGGGHHHHHHTTCCSEEE
T ss_pred EEecCCccccccCCChHHHHHHHHHHCCCEEEEEEeCCCcccccHHHHHHHHHhCCCCEEEEehhHHHHHhhcCCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888899999
Q ss_pred EcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCccccCCCceee
Q 017293 253 VGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVW 332 (374)
Q Consensus 253 vGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~K~~~~~~~~~~i~ie~r~~~ev~~~~~~~~~~~~~~~~~v~ 332 (374)
+|||+|++|| ++||+|||++|++||+|||||||+||+|||++. +.|.++++|+|+|+|+.... |.++.+++++++
T Consensus 231 vGAd~V~aNG-v~NKiGT~~lAl~Ak~~~vPfyV~a~~~k~d~~-~~g~~i~iEer~~~ev~~~~---g~~~~~~~v~v~ 305 (351)
T 1t5o_A 231 VGADRIVRDA-VFNKIGTYTVSVVAKHHNIPFYVAAPKATFDWE-RTAKDVVIEERPREELIFCG---KRQIAPLNVKVY 305 (351)
T ss_dssp ECCSEEETTE-EEEETTHHHHHHHHHHTTCCEEEECCGGGBCTT-CCGGGCCCCBCCTHHHHEET---TEECSCTTCEEC
T ss_pred ECccchhhcC-cccccCHHHHHHHHHHcCCCEEEeCccceeccc-cCCCccccccCCHHHhcccC---CeeecCCCccee
Confidence 9999999999 999999999999999999999999999999999 89999999999999999876 566778999999
Q ss_pred cceeeecCCCCccEEEeCCCCcccCCCcCccccHHHHHhh
Q 017293 333 NPAFDVTPANLITGIITEKQGVVTKAGADDAFDIKDFIQK 372 (374)
Q Consensus 333 np~fD~tP~~lIt~iITE~~Gi~~p~~~~~~~~~~~~~~~ 372 (374)
||+||+|||+|||+||||+ |+++|+. . ++|.+||+-
T Consensus 306 NPaFDvTP~~lIt~iITE~-Gv~~p~~-~--~~l~~~~~~ 341 (351)
T 1t5o_A 306 NPAFDPTPLENVTALITEY-GVIYPPY-E--VNVPKVLKF 341 (351)
T ss_dssp CBSEEEEEGGGCSEEEETT-EEECSCH-H--HHHHHHTTC
T ss_pred CccccCCCHHHCCEEEeCC-CccCcch-H--HHHHHHHcc
Confidence 9999999999999999999 9999984 3 688888754
No 4
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=100.00 E-value=5.7e-95 Score=711.92 Aligned_cols=338 Identities=46% Similarity=0.696 Sum_probs=317.6
Q ss_pred ceeEEEeCCeEEEEecCCCCCeEEEEEecChHHHHHHHHhccccCcHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHH
Q 017293 13 LQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFLGN 92 (374)
Q Consensus 13 ~~~i~~~~~~l~ilDQ~~lP~e~~~~~~~~~~~v~~aI~~m~VrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l~~ 92 (374)
+++|+|+++.|+|||||+||++++|++|+++++++++|++|+|||||+||++|++++++++++. ...+.+ +.|++
T Consensus 7 ~~~~~~~~~~~~~ldq~~lP~~~~~~~~~~~~~~~~aIk~m~VrGAp~ig~aaa~~l~l~~~~~--~~~~~~---~~l~~ 81 (347)
T 1t9k_A 7 TKTMEWSGNSLKLLDQRKLPFIEEYVECKTHEEVAHAIKEMIVRGAPAIGVAAAFGYVLGLRDY--KTGSLT---DWMKQ 81 (347)
T ss_dssp CSSEEECSSCEEEECTTTTTTCCCEEEECSHHHHHHHHHHTSSCSHHHHHHHHHHHHHHHHHTC--CSSCHH---HHHHH
T ss_pred ccceEEECCEEEEEeCCCCCCceEEEEeCCHHHHHHHHHhCCcCCcHHHHHHHHHHHHHHHHhc--ccCCHH---HHHHH
Confidence 4789999999999999999999999999999999999999999999999999999999999975 223444 45999
Q ss_pred HHHHHHhCCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCcEE
Q 017293 93 KLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSV 172 (374)
Q Consensus 93 ~~~~L~~~RPt~v~l~nai~~~~~~i~~~~~~~~~~~e~~~~l~~~~~~~~~e~~~a~~~I~~~~~~~i~~~~~~~~~~I 172 (374)
++++|.++|||++||+|++++|++.+++. .+.+++++.+++.+++|.+|+..++++|+++|+++|. +|++|
T Consensus 82 ~~~~L~~aRPtav~l~~a~~~~~~~i~~~----~~~~~~k~~l~~~~~~~~~e~~~~~~~I~~~g~~~I~-----~g~~I 152 (347)
T 1t9k_A 82 VKETLARTRPTAVNLFWALNRMEKVFFEN----ADRENLFEILENEALKMAYEDIEVNKAIGKNGAQLIK-----DGSTI 152 (347)
T ss_dssp HHHHHHTSCSSCTHHHHHHHHHHHHHHTT----TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC-----TTEEE
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCEE
Confidence 99999999999999999999999988653 2556789999999999999999999999999999999 89999
Q ss_pred EEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCCCCEEE
Q 017293 173 LTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVI 252 (374)
Q Consensus 173 LT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~vd~Vl 252 (374)
|||||||+|||+|||||+++|+.|+++|++|+|||+||||++||.|+|||+|.+.|||||+|+|||++++|++++||+||
T Consensus 153 LThcns~~lat~~~gtvl~~l~~A~~~gk~~~V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~M~~~~Vd~Vi 232 (347)
T 1t9k_A 153 LTHCNAGALATVDYGTALGVIRAAVESGKRIRVFADETRPYLQGARLTAWELMKDGIEVYVITDNMAGWLMKRGLIDAVV 232 (347)
T ss_dssp EECSCCSGGGSSSSCSHHHHHHHHHHTTCCEEEEEECCTTTTHHHHTHHHHHHTTTCEEEEECGGGHHHHHHTTCCSEEE
T ss_pred EEecCCCccccCCccHHHHHHHHHHHCCCeEEEEEeCCCCccccHHHHHHHHHhCCCCEEEEehhHHHHHhhcCCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888899999
Q ss_pred EcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCccccCCCceee
Q 017293 253 VGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVW 332 (374)
Q Consensus 253 vGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~K~~~~~~~~~~i~ie~r~~~ev~~~~~~~~~~~~~~~~~v~ 332 (374)
+|||+|++||+++||+|||++|++||+|||||||+||+|||++.++.|.++++|+|+|+|+.... |.++.+++++++
T Consensus 233 vGAd~V~aNG~v~NKiGT~~lAl~Ak~~~vPfyV~ap~~k~d~~~~~g~~i~iE~r~~~ev~~~~---g~~~~~~~v~v~ 309 (347)
T 1t9k_A 233 VGADRIALNGDTANKIGTYSLAVLAKRNNIPFYVAAPVSTIDPTIRSGEEIPIEERRPEEVTHCG---GNRIAPEGVKVL 309 (347)
T ss_dssp ECCSEEETTSCEEEETTHHHHHHHHHHTTCCEEEECCGGGEETTCSSGGGSCCCBCCTHHHHEET---TEECSCTTCEEC
T ss_pred ECccEEecCCCEEecccHHHHHHHHHHcCCCEEEecccceeccccCCccccccccCChHhccccC---CeeccCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999876 566778999999
Q ss_pred cceeeecCCCCccEEEeCCCCcccCCCcCccccHHHHHh
Q 017293 333 NPAFDVTPANLITGIITEKQGVVTKAGADDAFDIKDFIQ 371 (374)
Q Consensus 333 np~fD~tP~~lIt~iITE~~Gi~~p~~~~~~~~~~~~~~ 371 (374)
||+||+|||+|||+||||+ |+++|+. . ++|.++|.
T Consensus 310 NPaFDvTP~~lIt~iITE~-Gv~~p~~-~--~~l~~~~~ 344 (347)
T 1t9k_A 310 NPAFDVTENTLITAIITEK-GVIRPPF-E--ENIKKILE 344 (347)
T ss_dssp CBSEEEECGGGCSEEEETT-EEECSSH-H--HHHHHHHC
T ss_pred CcccccCCHHHCCEEeccC-CccCcch-H--HHHHHHhc
Confidence 9999999999999999999 9999984 3 68888874
No 5
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A*
Probab=100.00 E-value=2.8e-82 Score=621.11 Aligned_cols=313 Identities=29% Similarity=0.385 Sum_probs=289.6
Q ss_pred eEEEEEecChHHHHHHHHhccccCcHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHH
Q 017293 34 ETIYLEIRDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAK 113 (374)
Q Consensus 34 e~~~~~~~~~~~v~~aI~~m~VrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l~~~~~~L~~~RPt~v~l~nai~~ 113 (374)
-++|+.|+++++++++|++|+|||||+||++|+++|+++++++ .+.+.++|.+.|++++++|.++|||++||+|++++
T Consensus 14 ~~~~~~~~~~~~~~~aI~~m~VrGApai~iaaa~~l~~~~~~~--~~~~~~~l~~~l~~~~~~L~~aRPtav~L~~a~~~ 91 (338)
T 3a11_A 14 GRHMAVVKEVLEIAEKIKNMEIRGAGKIARSAAYALQLQAEKS--KATNVDEFWKEMKQAAKILFETRPTAVSLPNALRY 91 (338)
T ss_dssp -----CCSHHHHHHHHHHTCSSCSHHHHHHHHHHHHHHHHHHC--CCCSHHHHHHHHHHHHHHHHTTCTTCSHHHHHHHH
T ss_pred eEEEEEeCCHHHHHHHHHhCcEeCcHHHHHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 3789999999999999999999999999999999999999986 45678999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHH
Q 017293 114 LKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVI 193 (374)
Q Consensus 114 ~~~~i~~~~~~~~~~~e~~~~l~~~~~~~~~e~~~a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~tv~~~l 193 (374)
|++.+++......+.+++++.+++.+++|.+|+..++++|+++|+++|. +|++||||||| +||+++|
T Consensus 92 ~~~~i~~~~~~~~~~~~~k~~l~~~a~~~~~e~~~~~~~I~~~g~~~I~-----~g~~ILTh~~S--------~tvl~~l 158 (338)
T 3a11_A 92 VMHRGKIAYSSGADLEQLRFVIINAAKEFIHNSEKALERIGEFGAKRIE-----DGDVIMTHCHS--------KAAISVM 158 (338)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-----TTCEEEECSCC--------HHHHHHH
T ss_pred HHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCEEEEeCCc--------HHHHHHH
Confidence 9999876333346788999999999999999999999999999999999 89999999998 7999999
Q ss_pred HHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHH
Q 017293 194 RALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSL 273 (374)
Q Consensus 194 ~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~l 273 (374)
+.|+++|++|+|||+||||++|| |+|||+|.+.|||||+|+|||++++| ++||+||+|||+|++||+++||+|||++
T Consensus 159 ~~A~~~gk~~~V~v~EtRP~~qG-rltA~eL~~~GI~vtlI~Dsa~~~~M--~~Vd~VivGAd~V~anG~v~NKiGT~~l 235 (338)
T 3a11_A 159 KTAWEQGKDIKVIVTETRPKWQG-KITAKELASYGIPVIYVVDSAARHYM--KMTDKVVMGADSITVNGAVINKIGTALI 235 (338)
T ss_dssp HHHHHTTCCCEEEEECCTTTTHH-HHHHHHHHHTTCCEEEECGGGTTTTG--GGCSEEEECCSEECTTSCEEEETTHHHH
T ss_pred HHHHHCCCeEEEEEeCCCCchhh-HHHHHHHHhCCCCEEEEehHHHHHHH--HhCCEEEECccEEecCCCEeecccHHHH
Confidence 99999999999999999999999 88999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHhcCCeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCcccc-CCCceeecceeeecCCCCccEEEeCCC
Q 017293 274 ALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVA-ASGISVWNPAFDVTPANLITGIITEKQ 352 (374)
Q Consensus 274 A~~Ak~~~vPvyV~a~~~K~~~~~~~~~~i~ie~r~~~ev~~~~~~~~~~~~-~~~~~v~np~fD~tP~~lIt~iITE~~ 352 (374)
|++||+|||||||+||+|||++.++.|.++++|+|+|+|+... |.+.. +++++++||+||+|||+|||+||||+
T Consensus 236 Al~Ak~~~vPfyV~a~~~k~d~~~~~g~~i~iE~r~~~ev~~~----g~~~~w~~~v~v~NPaFDvTP~~lIt~iITE~- 310 (338)
T 3a11_A 236 ALTAKEHRVWTMIAAETYKFHPETMLGQLVEIEMRDPTEVIPE----DELKTWPKNIEVWNPAFDVTPPEYVDVIITER- 310 (338)
T ss_dssp HHHHHHTTCEEEEECCGGGBCSCCSSSSCCCCCBCCGGGTSCH----HHHTTSCTTEEECCBSEEEECGGGCSEEEETT-
T ss_pred HHHHHHcCCCEEEecccceecccCCCCcccccccCCHHHcccc----cccccCCCCceecCcceeccCHHHcCEEecCC-
Confidence 9999999999999999999999999999999999999999875 23445 78999999999999999999999999
Q ss_pred CcccCCCcCccccHHHHHh
Q 017293 353 GVVTKAGADDAFDIKDFIQ 371 (374)
Q Consensus 353 Gi~~p~~~~~~~~~~~~~~ 371 (374)
|+++|+++. ..|.++|.
T Consensus 311 Gv~~p~~v~--~~L~e~y~ 327 (338)
T 3a11_A 311 GIIPPYAAI--DILREEFG 327 (338)
T ss_dssp EEECGGGHH--HHHHHHHC
T ss_pred CccCchhHH--HHHHHHhC
Confidence 999999775 67777764
No 6
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5
Probab=100.00 E-value=2.2e-70 Score=524.25 Aligned_cols=270 Identities=25% Similarity=0.296 Sum_probs=254.9
Q ss_pred ChHHHHHHHHhccccCcHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHH
Q 017293 42 DSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKA 121 (374)
Q Consensus 42 ~~~~v~~aI~~m~VrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l~~~~~~L~~~RPt~v~l~nai~~~~~~i~~~ 121 (374)
++++++++|++|+|||||+||++|+++|+++++++ +..+|++.|++++++|.++|||++||+|+++++
T Consensus 5 ~~~~~~~~i~~~~vrGa~~i~~aa~~~l~~~~~~~-----~~~~~~~~l~~~~~~L~~~RPtav~l~~a~~~~------- 72 (276)
T 1vb5_A 5 RVLEILREMKRERIKGASWLAKKGAEAFLTLAEEL-----DESLLEDAIMELREEVVKVNPSMASLYNLARFI------- 72 (276)
T ss_dssp HHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHS-----CTTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHS-------
T ss_pred cHHHHHHHHHhCcEeCcHHHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHc-------
Confidence 68999999999999999999999999999999874 456899999999999999999999999999988
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCC
Q 017293 122 AATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGV 201 (374)
Q Consensus 122 ~~~~~~~~e~~~~l~~~~~~~~~e~~~a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~ 201 (374)
+.+++++.+++.+++|++++..++++|+++|+++|. +|++||||||| +|++++++.|+++|+
T Consensus 73 -----~~~~~k~~l~~~~~~~~~~~~~~~~~Ia~~a~~~I~-----~g~~IlT~~~s--------~Tv~~~l~~a~~~~~ 134 (276)
T 1vb5_A 73 -----PVTNRRDILKSRALEFLRRMEEAKRELASIGAQLID-----DGDVIITHSFS--------STVLEIIRTAKERKK 134 (276)
T ss_dssp -----CCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----TTEEEECCSCC--------HHHHHHHHHHHHTTC
T ss_pred -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----CCCEEEEeCCC--------hHHHHHHHHHHHcCC
Confidence 124567889999999999999999999999999999 89999999997 799999999999999
Q ss_pred eeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcC
Q 017293 202 LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHN 281 (374)
Q Consensus 202 ~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~ 281 (374)
+|+||++||||++|| +++|++|.+.||||++|+|++++++| ++||+||+|||+|++||+++||+|||++|++||+|+
T Consensus 135 ~~~V~v~etrP~~qG-~~~a~~L~~~gI~vtli~dsa~~~~m--~~vd~vivGAd~i~~nG~v~nkiGt~~iA~~A~~~~ 211 (276)
T 1vb5_A 135 RFKVILTESSPDYEG-LHLARELEFSGIEFEVITDAQMGLFC--REASIAIVGADMITKDGYVVNKAGTYLLALACHENA 211 (276)
T ss_dssp CEEEEEECCTTTTHH-HHHHHHHHHTTCCEEEECGGGHHHHH--TTCSEEEECCSEECTTSCEEEETTHHHHHHHHHHTT
T ss_pred eEEEEEeCCCcchhh-HHHHHHHHHCCCCEEEEcHHHHHHHH--ccCCEEEEcccEEecCCCEeechhHHHHHHHHHHcC
Confidence 999999999999999 67899999999999999999999999 899999999999999999999999999999999999
Q ss_pred CeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCccccCCCceeecceeeecCCCCccEEEeCCCCcccCCCc
Q 017293 282 ILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKQGVVTKAGA 360 (374)
Q Consensus 282 vPvyV~a~~~K~~~~~~~~~~i~ie~r~~~ev~~~~~~~~~~~~~~~~~v~np~fD~tP~~lIt~iITE~~Gi~~p~~~ 360 (374)
+||||+||++||++. +.+.++++|+|+++| ++++++||.||+|||+|||+||||. |+++|+++
T Consensus 212 vp~~V~a~~~K~~~~-~~~~~i~iE~r~~~e--------------~~v~v~np~fD~tP~~lI~~iITe~-Gv~~p~~v 274 (276)
T 1vb5_A 212 IPFYVAAETYKFHPT-LKSGDVMLMERDLIR--------------GNVRIRNVLFDVTPWKYVRGIITEL-GIVIPPRD 274 (276)
T ss_dssp CCEEEECCGGGBCSS-CCGGGCCCCBCCCEE--------------TTEECCCBCEEEECGGGCSEEEETT-EEECTTTT
T ss_pred CCEEEeccccccCcc-cCccccccccCCccc--------------cCccccCCCeEecCHHHCCEEEeCC-CccCcccc
Confidence 999999999999999 888999999999876 3578999999999999999999999 99999865
No 7
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=100.00 E-value=2.5e-67 Score=509.16 Aligned_cols=285 Identities=26% Similarity=0.301 Sum_probs=240.5
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHH
Q 017293 59 PAIAMAAALSLAVEVFNLNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEA 138 (374)
Q Consensus 59 ~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l~~~~~~L~~~RPt~v~l~nai~~~~~~i~~~~~~~~~~~e~~~~l~~~ 138 (374)
-.++++|+.+|...++++ ++.|.+||.+.|+++++.|.++|| +++|.|+++++++++........+.+++++.+++.
T Consensus 20 ~s~aiAAi~aL~~~l~~s--~~~T~~el~~~l~~a~~~L~~~r~-avsl~~a~~~~~~~i~~~~~~~~~~~~~k~~l~~~ 96 (315)
T 3ecs_A 20 MASAVAAIRTLLEFLKRD--KGETIQGLRANLTSAIETLCGVDS-SVAVSSGGELFLRFISLASLEYSDYSKCKKIMIER 96 (315)
T ss_dssp SCHHHHHHHHHHHHHTCC--C----CHHHHHHHHHHHTTTTTSC-CHHHHHHHHHHHHHCC-----------CTTHHHHH
T ss_pred hHHHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHH
Confidence 346677889999888876 678899999999999999999998 77999999999998754322335788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchH
Q 017293 139 AEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSR 218 (374)
Q Consensus 139 ~~~~~~e~~~a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~ 218 (374)
++.|.++...++++|+++|+++|. +|++||||||| +||+++|+.|+++|++|+|||+||||++||.+
T Consensus 97 ~~~~~~~~~~a~~~I~~~~~~~I~-----~g~~ILTh~~S--------~tv~~~l~~A~~~gk~~~V~v~EsrP~~qG~~ 163 (315)
T 3ecs_A 97 GELFLRRISLSRNKIADLCHTFIK-----DGATILTHAYS--------RVVLRVLEAAVAAKKRFSVYVTESQPDLSGKK 163 (315)
T ss_dssp HHHHHHHHTTHHHHHHHHHGGGCC-----TTEEEEECSCC--------HHHHHHHHHHHTTTCCEEEEEECCTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC-----CCCEEEEcCCc--------HHHHHHHHHHHHcCCeEEEEEecCCCcchHHH
Confidence 999999999999999999999999 89999999998 69999999999999999999999999999999
Q ss_pred hHHHHHhhCCCCeEEEcchHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccCccccCCCC
Q 017293 219 LTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLS 298 (374)
Q Consensus 219 l~a~~L~~~GI~vtlI~Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~K~~~~~~ 298 (374)
| +|+|.+.|||||+|+|+|++++| ++||+|++|||+|++||+++||+|||++|++||+|||||||+||+|||++.++
T Consensus 164 l-a~~L~~~gI~vtli~Dsa~~~~m--~~vd~VivGAd~i~~nG~v~nkiGT~~iAl~Ak~~~vP~~V~a~~~K~~~~~~ 240 (315)
T 3ecs_A 164 M-AKALCHLNVPVTVVLDAAVGYIM--EKADLVIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLFP 240 (315)
T ss_dssp H-HHHHHTTTCCEEEECGGGHHHHG--GGCSEEEEECSEECTTSCEEEETTHHHHHHHHHHTTCCEEEECCGGGBCSCCC
T ss_pred H-HHHHHHcCCCEEEEehhHHHHHH--HhCCEEEECceEEecCCCeeehhhhHHHHHHHHHhCCCEEEEeccccccccCC
Confidence 7 89999999999999999999999 79999999999999999999999999999999999999999999999999887
Q ss_pred CC-CccccccCCcccceeccCCCCccccCCCceeecceeeecCCCCccEEEeCCCCcccCCCcCccccHHHHHh
Q 017293 299 SG-QEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKQGVVTKAGADDAFDIKDFIQ 371 (374)
Q Consensus 299 ~~-~~i~ie~r~~~ev~~~~~~~~~~~~~~~~~v~np~fD~tP~~lIt~iITE~~Gi~~p~~~~~~~~~~~~~~ 371 (374)
.+ .++++|+|++.|+...+ ..+++++++||+||+|||+|||+||||. |+++|+++. .+|-++|-
T Consensus 241 ~~~~~i~~e~~~~~ev~~~~------~~~~~v~v~NP~fDvTP~~lIt~iITe~-Gv~~p~~vs--~eLik~~~ 305 (315)
T 3ecs_A 241 LNQQDVPDKFKYKADTLKVA------QTGQDLKEEHPWVDYTAPSLITLLFTDL-GVLTPSAVS--DELIKLYL 305 (315)
T ss_dssp SSGGGSCGGGTC-------------------CCBCCCSEEEECGGGCSEEEETT-EEECGGGHH--HHHHHHHT
T ss_pred CCcccCCccccChhhccccc------cCCCcCcCCCCCccCCCHHHcCEEEcCC-CCCCcchhh--HHHHHHHH
Confidence 44 56899999999887654 2467899999999999999999999999 999999886 67777653
No 8
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=100.00 E-value=3.2e-54 Score=390.71 Aligned_cols=169 Identities=49% Similarity=0.772 Sum_probs=155.5
Q ss_pred CCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCC--CCEEEEcceeeecCCCeecccccHHHHHHH
Q 017293 200 GVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGR--VSAVIVGADRVAANGDTANKIGTYSLALCA 277 (374)
Q Consensus 200 g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~--vd~VlvGAd~i~~nG~v~nkiGT~~lA~~A 277 (374)
||+|+|||+||||++||+|||||+|.+.|||||+|+|+|++++|++++ ||+||+|||+|++||+++||+|||++|++|
T Consensus 2 ~k~~~V~v~EsRP~~qG~rlta~eL~~~gI~vtlI~Dsa~~~~m~~~~~~Vd~VivGAd~v~~nG~v~nkiGT~~~Al~A 81 (191)
T 1w2w_B 2 PRMGHVFPLETRPYNQGSRLTAYELVYDKIPSTLITDSSIAYRIRTSPIPIKAAFVGADRIVRNGDTANKIGTLQLAVIC 81 (191)
T ss_dssp CEEEEEEEBCCTTTTHHHHTHHHHHHHHTCCBEEBCGGGHHHHHHHCSSCEEEEEECCSEECTTSCEEEETTHHHHHHHH
T ss_pred CcEEEEEEcCCCCccccHHHHHHHHHHcCCCEEEEechHHHHHHHhCCCCCCEEEECccEEecCCCEEecccHHHHHHHH
Confidence 689999999999999999999999999999999999999999997777 999999999999999999999999999999
Q ss_pred HhcCCeEEEeccCccccCCCCCCCccccccCCcccceeccCC-----CC--------------ccccCCCceeecceeee
Q 017293 278 KFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGG-----LG--------------EQVAASGISVWNPAFDV 338 (374)
Q Consensus 278 k~~~vPvyV~a~~~K~~~~~~~~~~i~ie~r~~~ev~~~~~~-----~~--------------~~~~~~~~~v~np~fD~ 338 (374)
|+|||||||+||+|||++.++.|.++++|+|+|+|+...++. .| .+..+++++++||+||+
T Consensus 82 k~~~vPf~V~a~~~k~~~~~~~g~~i~iE~r~~~ev~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~v~Np~fDv 161 (191)
T 1w2w_B 82 KQFGIKFFVVAPKTTIDNVTETGDDIIVEERNPEEFKVVTGTVINPENGSLILNESGEPITGKVGIAPLEINVWNPAFDI 161 (191)
T ss_dssp HHHTCEEEEECCGGGBCSSCCSGGGCCCCBCCTHHHHEEEEEEBCTTTCCBCBCTTSCBCEEEEECSCTTCEECCBSEEE
T ss_pred HHcCCCEEEecccceeeeccCCcceeecccCCHHHhccccCccccccccccccccccccccccccccCCCcccccccccc
Confidence 999999999999999999999999999999999999887531 01 14567899999999999
Q ss_pred cCCCCccEEEeCCCCcccCCCcCccccHHHHH
Q 017293 339 TPANLITGIITEKQGVVTKAGADDAFDIKDFI 370 (374)
Q Consensus 339 tP~~lIt~iITE~~Gi~~p~~~~~~~~~~~~~ 370 (374)
|||+|||+||||+ |+++|+++. .|+|.+||
T Consensus 162 TP~~lIt~iITE~-Gv~~ps~~~-~~~l~~~~ 191 (191)
T 1w2w_B 162 TPHELIDGIITEE-GVFTKNSSG-EFQLESLF 191 (191)
T ss_dssp ECGGGCSEEEETT-EEECCCTTS-CCCCGGGC
T ss_pred CCHHHcCEEEecC-cccCCCCcc-hhhHHhhC
Confidence 9999999999999 999998665 46888775
No 9
>1w2w_A 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=100.00 E-value=8.3e-45 Score=331.97 Aligned_cols=187 Identities=41% Similarity=0.664 Sum_probs=164.4
Q ss_pred CceeEEE---e-C-CeEEEEecCCCCCeEEEEEecChHHHHHHHHhccccCcHHHHHHHHHHHHHHHhhccCCCCCHH--
Q 017293 12 SLQSICY---R-R-GSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAA-- 84 (374)
Q Consensus 12 ~~~~i~~---~-~-~~l~ilDQ~~lP~e~~~~~~~~~~~v~~aI~~m~VrGA~ai~~~aa~~l~~~~~~~~~~~~~~~-- 84 (374)
+++.|+| + + +.|+|||||+||++++|++|++++|++++|++|+|||||+||++|++||++++++... ..+.+
T Consensus 2 ~l~~~~~~~~~~~~~~l~iLDQ~~LP~e~~~~~~~~~~~v~~AIk~M~VRGAPaIgiaAA~glal~a~~~~~-~~~~~~~ 80 (211)
T 1w2w_A 2 SLEAIVFDRSEPENVSVKVLDQLLLPYTTKYVPIHTIDDGYSVIKSMQVRGAPAIAIVGSLSVLTEVQLIKH-NPTSDVA 80 (211)
T ss_dssp TTCSEEEECSSTTSCEEEEECTTTTTTCCCEEECCSHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHH-CTTSTGG
T ss_pred CcCCeeeeeecCCCCEEEEEecCCCCCcEEEEEeCCHHHHHHHHHCCcccCchHHHHHHHHHHHHHHHhccc-cCChhhc
Confidence 3556666 3 3 4899999999999999999999999999999999999999999999999999986410 12333
Q ss_pred ---------HHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017293 85 ---------DAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGS 155 (374)
Q Consensus 85 ---------el~~~l~~~~~~L~~~RPt~v~l~nai~~~~~~i~~~~~~~~~~~e~~~~l~~~~~~~~~e~~~a~~~I~~ 155 (374)
++.+.|++.+++|.++|||+|||.|++++|++.+... .+.+++++.+++.++.|.+|+...|++|++
T Consensus 81 ~~~~~~~~~~~~~~l~~~~~~L~~sRPTAVNL~~Al~r~~~~~~~~----~~~~~~~~~l~~~a~~i~~ed~~~n~~IG~ 156 (211)
T 1w2w_A 81 TLYSLVNWESTKTVLNKRLDFLLSSRPTAVNLSNSLVEIKNILKSS----SDLKAFDGSLYNYVCELIDEDLANNMKMGD 156 (211)
T ss_dssp GGSCTTCHHHHHHHHHHHHHHHHTSCCSCSHHHHHHHHHHHHHHTC----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999887532 477889999999999999999999999999
Q ss_pred HHHHHhHhhhc-C---CCcEEEEecCCCcccccccccHHHHHHHHHHCCCee
Q 017293 156 YGASFLQNQLK-N---SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLE 203 (374)
Q Consensus 156 ~~~~~i~~~~~-~---~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~ 203 (374)
+|+++|.+... + +|++||||||+|+|||+||||++++|+.||++|+.+
T Consensus 157 ~Ga~lI~~~~~~~~~~dg~~ILTHCNtG~LAT~g~GTALgvIr~a~~~Gk~~ 208 (211)
T 1w2w_A 157 NGAKYLIDVLQKDGFKDEFAVLTICNTGSLATSGYGTALGVIRSLWKDSLAK 208 (211)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEEECSCCSGGGSSSSCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccCCCCCeEEeECCCchHhhcCcchHHHHHHHHHHcCCcc
Confidence 99999944331 2 579999999999999999999999999999988765
No 10
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomi initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A* 1uj4_A*
Probab=98.21 E-value=3.6e-06 Score=77.71 Aligned_cols=128 Identities=19% Similarity=0.128 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHC----CCe-eEEEEecCCCCCcchHhHHH
Q 017293 148 ATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSE----GVL-ERAYCSETRPFNQGSRLTAF 222 (374)
Q Consensus 148 ~a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~----g~~-~~V~v~EsrP~~eG~~l~a~ 222 (374)
+..++|++.++++|. +|++|...+ | +|+..+++...+. +.+ ++| |+-| .+ ++.
T Consensus 7 ~~K~~IA~~Aa~~I~-----dg~~I~Lgs--G-------ST~~~~~~~L~~~~~~~~l~~itv-VTnS------~~-~a~ 64 (227)
T 1uj6_A 7 SYKKEAAHAAIAYVQ-----DGMVVGLGT--G-------STARYAVLELARRLREGELKGVVG-VPTS------RA-TEE 64 (227)
T ss_dssp HHHHHHHHHHHTTCC-----TTCEEEECC--S-------HHHHHHHHHHHHHHHTTSSCSCEE-EESS------HH-HHH
T ss_pred HHHHHHHHHHHHHCC-----CCCEEEEcC--C-------HHHHHHHHHHhhhhhhcCCCCEEE-ECCc------HH-HHH
Confidence 345678999999999 899999864 2 5777777666432 224 777 5554 22 466
Q ss_pred HHhhCCCCeEEEcchHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHH--HHHHhcCCeEEEeccCccccCCCCCC
Q 017293 223 ELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLA--LCAKFHNILFYVAAPLTSIDLTLSSG 300 (374)
Q Consensus 223 ~L~~~GI~vtlI~Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA--~~Ak~~~vPvyV~a~~~K~~~~~~~~ 300 (374)
+|.+.||++.++ .+.++|+.|+|||.|-.++-.....|...+- ++++. ...+|+++++.||....- .
T Consensus 65 ~l~~~gi~v~~l---------~~~~~D~af~Gadgvd~~~~~~~~~g~a~~kekiva~~-a~~~ivlaD~sK~~~~lg-~ 133 (227)
T 1uj6_A 65 LAKREGIPLVDL---------PPEGVDLAIDGADEIAPGLALIKGMGGALLREKIVERV-AKEFIVIADHTKKVPVLG-R 133 (227)
T ss_dssp HHHHTTCCBCCC---------CTTCEEEEEECCSEEEGGGEEECCTTSCHHHHHHHHHT-EEEEEEEEEGGGBCSSSC-S
T ss_pred HHHhCCCeEEEc---------CCCcCCEEEECCCccCccccEECCHHHHHHHHHHHHhc-cCCEEEEEEcchhccccC-C
Confidence 788899998887 2368999999999999988445555666553 44443 569999999999987632 3
Q ss_pred CccccccC
Q 017293 301 QEIVIEER 308 (374)
Q Consensus 301 ~~i~ie~r 308 (374)
..+|+|-.
T Consensus 134 ~~lPvEV~ 141 (227)
T 1uj6_A 134 GPVPVEIV 141 (227)
T ss_dssp SCEEEEEC
T ss_pred CceeEEEC
Confidence 35666644
No 11
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structu genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp}
Probab=97.60 E-value=0.00023 Score=65.37 Aligned_cols=129 Identities=15% Similarity=0.038 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCC
Q 017293 149 TNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDR 228 (374)
Q Consensus 149 a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~G 228 (374)
..+++++.++++++ +|++|..-+ | ||+..+++...+..+++++.|+=|- + ++..|.+.|
T Consensus 12 ~K~~iA~~A~~~V~-----~g~~Iglgs--G-------ST~~~~i~~L~~~~~~itv~VtnS~------~-~a~~l~~~g 70 (224)
T 3kwm_A 12 LKKLAATEAAKSIT-----TEITLGVGT--G-------STVGFLIEELVNYRDKIKTVVSSSE------D-STRKLKALG 70 (224)
T ss_dssp HHHHHHHHHHTTCC-----SSEEEEECC--S-------HHHHHHHHHGGGCTTTEEEEEESCH------H-HHHHHHHTT
T ss_pred HHHHHHHHHHHhCC-----CCCEEEECC--c-------HHHHHHHHHHHhhcCceEEEECCcH------H-HHHHHHHcC
Confidence 45678888999998 888877642 2 5787788777655457777566542 2 456788899
Q ss_pred CCeEEEcchHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHH-HHHHHhcCCeEEEeccCccccCCCCCCCcccccc
Q 017293 229 IPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSL-ALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEE 307 (374)
Q Consensus 229 I~vtlI~Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~l-A~~Ak~~~vPvyV~a~~~K~~~~~~~~~~i~ie~ 307 (374)
|++..+-+ . .++|+.|.|||.|-.++.++---|...+ --+......-||++++..||....- ...+|+|-
T Consensus 71 i~l~~l~~------~--~~iD~afdGADevd~~~~liKGgg~al~rEKiva~~A~~~iviaD~sK~~~~Lg-~~plPvEV 141 (224)
T 3kwm_A 71 FDVVDLNY------A--GEIDLYIDGADECNNHKELIKGGGAALTREKICVAAAKKFICIIDESKKVNTLG-NFPLPIEV 141 (224)
T ss_dssp CCBCCHHH------H--CSEEEEEECCSEECTTSCEECCSSSCHHHHHHHHHTEEEEEEEEEGGGBCSSBC-SSCEEEEE
T ss_pred CeEEecCc------c--ccccEEEECCCccccccCeecCchhhHHHHHHHHHhcCcEEEEEeCchhhhhcC-CCCeEEEE
Confidence 99775422 2 6999999999999998877653333222 1233345678999999999986542 23455553
No 12
>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase, northeast structural genomics consortium, IR21, structural genomics, PSI; HET: CIT; 1.90A {Haemophilus influenzae} SCOP: c.124.1.4 d.58.40.1
Probab=97.58 E-value=0.00015 Score=66.36 Aligned_cols=130 Identities=13% Similarity=0.015 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCC
Q 017293 149 TNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDR 228 (374)
Q Consensus 149 a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~G 228 (374)
..++|++.+++++. +|++|..-+ | +|+..+++...+.+.+++|.|+=|- + ++.+|.+.|
T Consensus 6 ~K~~IA~~Aa~~I~-----dg~~I~Lds--G-------ST~~~la~~L~~~~~~itv~VTnS~------~-~a~~l~~~g 64 (219)
T 1m0s_A 6 MKKLAAQAALQYVK-----ADRIVGVGS--G-------STVNCFIEALGTIKDKIQGAVAASK------E-SEELLRKQG 64 (219)
T ss_dssp HHHHHHHHHGGGCC-----TTSEEEECC--S-------HHHHHHHHHHHTTGGGSCEEEESSH------H-HHHHHHHTT
T ss_pred HHHHHHHHHHHhCC-----CCCEEEEcC--h-------HHHHHHHHHHhccCCCEEEEECChH------H-HHHHHHhCC
Confidence 45678899999998 899987642 2 5788777777543215776455442 2 356777889
Q ss_pred CCeEEEcchHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHH-HHHHhcCCeEEEeccCccccCCCCCCCcccccc
Q 017293 229 IPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLA-LCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEE 307 (374)
Q Consensus 229 I~vtlI~Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA-~~Ak~~~vPvyV~a~~~K~~~~~~~~~~i~ie~ 307 (374)
|++..+- .+ .++|+.|+|||.|-.++++..--|-..+- -+......-+|+++.+.||....-....+|+|-
T Consensus 65 i~vi~l~------~~--~~~D~af~Gadgid~~~g~~~~~~~a~~kekiv~~~A~~~ivlaD~SK~~~~lg~~~~lPvEV 136 (219)
T 1m0s_A 65 IEVFNAN------DV--SSLDIYVDGADEINPQKMMIKGGGAALTREKIVAALAKKFICIVDSSKQVDVLGSTFPLPVEV 136 (219)
T ss_dssp CCBCCGG------GC--SCEEEEEECCSEECTTSCEECCTTSCHHHHHHHHHHEEEEEEEEEGGGBCSSTTSSSCEEEEE
T ss_pred CeEEEeC------cc--ccCCEEEECcCeECCCCCeecCHHHHHHHHHHHHHhcCcEEEEEeCcHHhhccCCCCCEEEEE
Confidence 9887642 12 58999999999999877665433433333 122234558999999999987643233466654
No 13
>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium; 2.09A {Plasmodium falciparum}
Probab=97.57 E-value=0.0003 Score=65.37 Aligned_cols=130 Identities=15% Similarity=0.127 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHH-HhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHC----CC-eeEEEEecCCCCCcchHhHH
Q 017293 148 ATNKAIGSYGAS-FLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSE----GV-LERAYCSETRPFNQGSRLTA 221 (374)
Q Consensus 148 ~a~~~I~~~~~~-~i~~~~~~~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~----g~-~~~V~v~EsrP~~eG~~l~a 221 (374)
...++|++.+++ +|. +|++|..=+ | ||+..+++...+. +. +++| |+=| .. ++
T Consensus 11 ~~K~~iA~~Aa~~~I~-----dg~~IgLgs--G-------ST~~~~~~~L~~~~~~~~l~~itv-VTnS------~~-~a 68 (244)
T 2f8m_A 11 SLKKIVAYKAVDEYVQ-----SNMTIGLGT--G-------STVFYVLERIDNLLKSGKLKDVVC-IPTS------ID-TE 68 (244)
T ss_dssp HHHHHHHHHHHHHHCC-----TTCEEEECC--S-------TTTHHHHHHHHHHHHHTSSCSCEE-EESS------HH-HH
T ss_pred HHHHHHHHHHHHHhCC-----CCCEEEEcC--h-------HHHHHHHHHHhhhhhccCCCCEEE-ECCc------HH-HH
Confidence 355678899999 999 899887542 3 4777676665422 22 5666 4433 12 35
Q ss_pred HHHhhCCCCeEEEcchHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHH-HHHhcCCeEEEeccCcccc-CCCCC
Q 017293 222 FELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLAL-CAKFHNILFYVAAPLTSID-LTLSS 299 (374)
Q Consensus 222 ~~L~~~GI~vtlI~Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~-~Ak~~~vPvyV~a~~~K~~-~~~~~ 299 (374)
.+|.+.||++..+- .+ +.+|+.|.|||.|-.+++++.--|-..+-- +.-....-||+++.+.||. ...-.
T Consensus 69 ~~l~~~gi~v~~l~------~~--~~iD~afdGaDeId~~~glikg~g~Al~kekiva~~A~~~ivlaD~SK~~~~~Lg~ 140 (244)
T 2f8m_A 69 LKARKLGIPLTTLE------KH--SNIDITIDGTDEIDLNLNLIKGRGGALVREKLVASSSSLLIIIGDESKLCTNGLGM 140 (244)
T ss_dssp HHHHHHTCCBCCCC------SS--CCBSEEEECCSEECTTCCEECCTTSCHHHHHHHHHTBSCEEEEEEGGGBCSSCTTC
T ss_pred HHHHHCCCeEEEec------cc--CcCCEEEECCcccCCCCCcccCHHHHHHHHHHHHHhhCcEEEEEECCccccccCCC
Confidence 66777799988772 23 589999999999999877766666655554 3556778899999999999 55332
Q ss_pred CCcccccc
Q 017293 300 GQEIVIEE 307 (374)
Q Consensus 300 ~~~i~ie~ 307 (374)
...+|+|-
T Consensus 141 ~~plPvEV 148 (244)
T 2f8m_A 141 TGAVPIEI 148 (244)
T ss_dssp SSCEEEEE
T ss_pred CCcEEEEE
Confidence 23466654
No 14
>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A {Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB: 1lk7_A*
Probab=97.48 E-value=0.00036 Score=64.27 Aligned_cols=129 Identities=16% Similarity=0.162 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHC---C-C-eeEEEEecCCCCCcchHhHHHH
Q 017293 149 TNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSE---G-V-LERAYCSETRPFNQGSRLTAFE 223 (374)
Q Consensus 149 a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~---g-~-~~~V~v~EsrP~~eG~~l~a~~ 223 (374)
..++|++.++++|. +|++|..=+ | +|+..+++...+. + . +++| |+=| .+ ++.+
T Consensus 6 ~K~~IA~~Aa~~I~-----dg~~I~Lds--G-------ST~~~~a~~L~~~~~~~~l~~itv-VTnS------~~-~a~~ 63 (229)
T 1lk5_A 6 MKKIAAKEALKFIE-----DDMVIGLGT--G-------STTAYFIKLLGEKLKRGEISDIVG-VPTS------YQ-AKLL 63 (229)
T ss_dssp HHHHHHHHHGGGCC-----TTCEEEECC--S-------HHHHHHHHHHHHHHHTTSSCSCEE-EESS------HH-HHHH
T ss_pred HHHHHHHHHHHhCC-----CCCEEEEcC--h-------HHHHHHHHHHhhhhhhccCCCEEE-ECCc------HH-HHHH
Confidence 45678899999998 899987642 2 5777777766432 2 1 5666 4433 12 3567
Q ss_pred HhhCCCCeEEEcchHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHH-HHHHhcCCeEEEeccCccccCCCCCCCc
Q 017293 224 LVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLA-LCAKFHNILFYVAAPLTSIDLTLSSGQE 302 (374)
Q Consensus 224 L~~~GI~vtlI~Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA-~~Ak~~~vPvyV~a~~~K~~~~~~~~~~ 302 (374)
|.+.||++..+- .+ .++|+.|+|||.|-.++++..-.|-..+- -+......-+|+++++.||....-....
T Consensus 64 l~~~gi~vi~l~------~~--~~~D~af~Gadgid~~~g~~~~~~~a~~kekiv~~~A~~~ivlaD~SK~~~~lg~~~~ 135 (229)
T 1lk5_A 64 AIEHDIPIASLD------QV--DAIDVAVDGADEVDPNLNLIKGRGAALTMEKIIEYRAGTFIVLVDERKLVDYLCQKMP 135 (229)
T ss_dssp HHHTTCCBCCGG------GC--SCEEEEEECCSEECTTCCEECCTTSCHHHHHHHHHTEEEEEEEEEGGGBCSSTTSSCC
T ss_pred HHhCCCeEEEeC------Cc--ccCCEEEECCCeECCCCCeecCHHHHHHHHHHHHHhcCCeEEEEchhhhhhhcCCCCC
Confidence 778899887642 12 48999999999999887665544444433 1233456689999999999876432335
Q ss_pred ccccc
Q 017293 303 IVIEE 307 (374)
Q Consensus 303 i~ie~ 307 (374)
+|+|-
T Consensus 136 lPvEV 140 (229)
T 1lk5_A 136 VPIEV 140 (229)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66654
No 15
>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans}
Probab=97.28 E-value=0.0011 Score=60.96 Aligned_cols=128 Identities=19% Similarity=0.140 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHC----CCeeEEEEecCCCCCcchHhHHHHH
Q 017293 149 TNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSE----GVLERAYCSETRPFNQGSRLTAFEL 224 (374)
Q Consensus 149 a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~----g~~~~V~v~EsrP~~eG~~l~a~~L 224 (374)
..+.+++.++++++ +|++|..-+ | ||+..+++...+. +.++++ |+=|. + ++..|
T Consensus 4 ~K~~iA~~A~~~V~-----dg~vIgLGs--G-------ST~~~~i~~L~~~~~~~~~~i~~-VttS~------~-t~~~l 61 (225)
T 3l7o_A 4 LKKIAGVRAAQYVE-----DGMIVGLGT--G-------STAYYFVEEVGRRVQEEGLQVIG-VTTSS------R-TTAQA 61 (225)
T ss_dssp HHHHHHHHHHTTCC-----TTCEEEECC--S-------TTHHHHHHHHHHHHHHHCCCCEE-EESSH------H-HHHHH
T ss_pred HHHHHHHHHHHhCC-----CCCEEEECC--c-------HHHHHHHHHHHHhhhhcCCCEEE-EcCCH------H-HHHHH
Confidence 34568888999999 888887643 3 4777777665442 456666 44331 2 35567
Q ss_pred hhCCCCeEEEcchHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHH-HHHHhcCCeEEEeccCccccCCCCCCCcc
Q 017293 225 VHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLA-LCAKFHNILFYVAAPLTSIDLTLSSGQEI 303 (374)
Q Consensus 225 ~~~GI~vtlI~Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA-~~Ak~~~vPvyV~a~~~K~~~~~~~~~~i 303 (374)
.+.||++..+-+ ..++|+.|.|||.|-.+..++---|...+= =+-.....-||+++...||....- ...+
T Consensus 62 ~~~Gi~l~~l~~--------~~~iD~a~dGADevd~~~~liKGgG~al~rEKiva~~A~~~iviaD~sK~~~~Lg-~~pl 132 (225)
T 3l7o_A 62 QALGIPLKSIDE--------VDSVDVTVDGADEVDPNFNGIKGGGGALLMEKIVGTLTKDYIWVVDESKMVDTLG-AFRL 132 (225)
T ss_dssp HHHTCCBCCGGG--------SSCEEEEEECCSEECTTSCEECCTTSCHHHHHHHHHTEEEEEEEEEGGGBCSSSC-SSCE
T ss_pred hccCceEEecCc--------ccccCEEEEcCCccCcccCeecCchhhhHHHHHHHHhCCeEEEEEecccchhhcC-CCCE
Confidence 788999876532 279999999999999988776544433221 122234567999999999986542 2345
Q ss_pred cccc
Q 017293 304 VIEE 307 (374)
Q Consensus 304 ~ie~ 307 (374)
|+|-
T Consensus 133 PvEV 136 (225)
T 3l7o_A 133 PVEV 136 (225)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6653
No 16
>1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein ST initiative, MCSG, midwest center for structural genomics; HET: ABF; 1.25A {Escherichia coli} SCOP: c.124.1.4 d.58.40.1 PDB: 1lkz_A 1ks2_A* 3enq_A 3env_A* 3enw_A*
Probab=97.23 E-value=0.00016 Score=66.18 Aligned_cols=129 Identities=17% Similarity=0.038 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCC
Q 017293 149 TNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDR 228 (374)
Q Consensus 149 a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~G 228 (374)
..++|++.++++|. +|++|..-+ | +|+..+++...+.+.+++|.|+=|-+- +.+|.+.|
T Consensus 6 ~K~~IA~~Aa~lI~-----dg~~I~Lds--G-------ST~~~la~~L~~~~~~itv~VTnS~~~-------a~~l~~~g 64 (219)
T 1o8b_A 6 LKKAVGWAALQYVQ-----PGTIVGVGT--G-------STAAHFIDALGTMKGQIEGAVSSSDAS-------TEKLKSLG 64 (219)
T ss_dssp ----------------------CEEECC--S-------CC---------------CCEEESCCC----------------
T ss_pred HHHHHHHHHHHhCC-----CCCEEEEcC--h-------HHHHHHHHHHhccCCCEEEEECCcHHH-------HHHHHhCC
Confidence 45678889999999 898887543 2 477777766643321566646655432 34566668
Q ss_pred CCeEEEcchHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHH-HHHHhcCCeEEEeccCccccCCCCCCCcccccc
Q 017293 229 IPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLA-LCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEE 307 (374)
Q Consensus 229 I~vtlI~Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA-~~Ak~~~vPvyV~a~~~K~~~~~~~~~~i~ie~ 307 (374)
|++..+- .+ .++|+.|+|||.|-.++++..--|-..+- -+......-+|+++++.||....- ...+|+|-
T Consensus 65 i~vi~l~------~~--~~~D~af~Gadgid~~~~~~~~~~~a~~kekiv~~~A~~~ivlaD~SK~~~~lg-~~~lPvEV 135 (219)
T 1o8b_A 65 IHVFDLN------EV--DSLGIYVDGADEINGHMQMIKGGGAALTREKIIASVAEKFICIADASKQVDILG-KFPLPVEV 135 (219)
T ss_dssp ---CCGG------GC--SCEEEEEECCSEECTTSCEECCCCC-HHHHHHHHHHEEEEEEEEEGGGBCSSBT-SSCEEEEE
T ss_pred CeEEEeC------cc--CcCCEEEECcceECCCCCeecCHHHHHHHHHHHHHhcCcEEEEEeCcccccccC-CCcEEEEE
Confidence 8776652 12 58999999999999887766333333333 122234558999999999987642 23466654
No 17
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, STRU genomics, seattle structural genomics center for infectious; HET: 5RP; 2.30A {Bartonella henselae}
Probab=97.05 E-value=0.002 Score=60.04 Aligned_cols=127 Identities=16% Similarity=0.125 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHH---CCCeeEEEEecCCCCCcchHhHHHHHhh
Q 017293 150 NKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHS---EGVLERAYCSETRPFNQGSRLTAFELVH 226 (374)
Q Consensus 150 ~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~---~g~~~~V~v~EsrP~~eG~~l~a~~L~~ 226 (374)
.+.+++.++++|. +|++|..- || ||+..+++...+ .|.++++ |+=| .+ ++.+|.+
T Consensus 28 K~~iA~~A~~~V~-----dg~vIgLG--sG-------ST~~~~i~~L~~~~~~gl~Itv-VttS------~~-ta~~l~~ 85 (255)
T 3hhe_A 28 KKMAALKALEFVE-----DDMRLGIG--SG-------STVNEFIPLLGERVANGLRVTC-VATS------QY-SEQLCHK 85 (255)
T ss_dssp HHHHHHHHHTTCC-----TTEEEEEC--CS-------HHHHHHHHHHHHHHHTTCCEEE-EESS------HH-HHHHHHH
T ss_pred HHHHHHHHHHhCC-----CCCEEEEC--Cc-------HHHHHHHHHHHHhhccCCcEEE-EcCC------HH-HHHHHHH
Confidence 4567888889998 88887664 23 477767665533 3445554 3332 22 4567888
Q ss_pred CCCCeEEEcchHHHHHHhcCCCCEEEEcceeeecCCCeeccccc-HHHHHHHHhcCCeEEEeccCccccCCCCCCCcccc
Q 017293 227 DRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGT-YSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVI 305 (374)
Q Consensus 227 ~GI~vtlI~Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT-~~lA~~Ak~~~vPvyV~a~~~K~~~~~~~~~~i~i 305 (374)
.||++..+.+ + .++|+.|.|||.|-.+..++---|. +.--=+......-|||++...||....- ...+|+
T Consensus 86 ~GI~l~~l~~------~--~~iD~afdGADeVD~~~~lIKGgG~al~rEKiva~~A~~~ivIaD~SK~v~~LG-~~plPV 156 (255)
T 3hhe_A 86 FGVPISTLEK------I--PELDLDIDGADEIGPEMTLIKGGGGALLHEKIVASASRAMFVIADETKMVKTLG-AFALPI 156 (255)
T ss_dssp TTCCBCCTTT------C--CSBSEEEECCSEECGGGCEECCTTSCHHHHHHHHHTBSCEEEEEEGGGBCSSSC-SSCEEE
T ss_pred cCCcEEeccc------c--cccCEEEECCCccccccCeeeCchhhhHHHHHHHHhcCcEEEEEeCCCChhhhC-CCCeEE
Confidence 9999876532 2 6899999999999988776543333 2221233345677999999999987543 234666
Q ss_pred cc
Q 017293 306 EE 307 (374)
Q Consensus 306 e~ 307 (374)
|-
T Consensus 157 EV 158 (255)
T 3hhe_A 157 EV 158 (255)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 18
>2pjm_A Ribose-5-phosphate isomerase A; 3D-structure, structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; 1.78A {Methanocaldococcus jannaschii} PDB: 3ixq_A*
Probab=96.91 E-value=0.0059 Score=56.01 Aligned_cols=128 Identities=15% Similarity=0.108 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHC----CCeeEEEEecCCCCCcchHhHHHHH
Q 017293 149 TNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSE----GVLERAYCSETRPFNQGSRLTAFEL 224 (374)
Q Consensus 149 a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~----g~~~~V~v~EsrP~~eG~~l~a~~L 224 (374)
..++|++.++++|. +|++|..-+ | ||+..+++...+. +.++++ |+=| .+ ++..|
T Consensus 6 ~K~~iA~~A~~~I~-----~g~~Iglgs--G-------ST~~~~~~~L~~~~~~~~l~itv-VtnS------~~-~a~~l 63 (226)
T 2pjm_A 6 LKLKVAKEAVKLVK-----DGMVIGLGT--G-------STAALFIRELGNRIREEELTVFG-IPTS------FE-AKMLA 63 (226)
T ss_dssp HHHHHHHHHGGGCC-----TTCEEEECC--S-------HHHHHHHHHHHHHHHHHTCCCEE-EESS------HH-HHHHH
T ss_pred HHHHHHHHHHHHCC-----CCCEEEECC--C-------HHHHHHHHHHHhhhhccCCcEEE-EeCc------HH-HHHHH
Confidence 45678889999999 888887643 2 5777776655332 335554 3332 12 35678
Q ss_pred hhCCCCeEEEcchHHHHHHhcCCCCEEEEcceeeecC-CCeecccccHHH-HHHHHhcCCeEEEeccCccccCCCCCCCc
Q 017293 225 VHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAAN-GDTANKIGTYSL-ALCAKFHNILFYVAAPLTSIDLTLSSGQE 302 (374)
Q Consensus 225 ~~~GI~vtlI~Dsav~~~m~~~~vd~VlvGAd~i~~n-G~v~nkiGT~~l-A~~Ak~~~vPvyV~a~~~K~~~~~~~~~~ 302 (374)
.+.||++.-+.+ + . +|+.|.|||.|-++ +.++---|...+ --+......-|++++...||....-....
T Consensus 64 ~~~gi~v~~l~~------~--~-iD~afdGaDevd~~t~~likGgg~al~rEKiva~~A~~~IviaD~sK~~~~Lg~~~~ 134 (226)
T 2pjm_A 64 MQYEIPLVTLDE------Y--D-VDIAFDGADEVEETTLFLIKGGGGCHTQEKIVDYNANEFVVLVDESKLVKKLGEKFP 134 (226)
T ss_dssp HHTTCCBCCTTT------C--C-CSEEEECCSEEETTTCCEECCTTSCHHHHHHHHHHSSEEEEEEEGGGEESSTTSSSC
T ss_pred HhcCCeEEeecc------c--c-CCEEEEcCceeccccCceeeccchhhHHHHHHHHHhCcEEEEEecchhhhccCCCCC
Confidence 899998773221 2 4 99999999999999 766533333222 22233456689999999999876432234
Q ss_pred ccccc
Q 017293 303 IVIEE 307 (374)
Q Consensus 303 i~ie~ 307 (374)
+|+|-
T Consensus 135 lPvEV 139 (226)
T 2pjm_A 135 IPVEV 139 (226)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66653
No 19
>1xtz_A Ribose-5-phosphate isomerase; yeast; 2.10A {Saccharomyces cerevisiae}
Probab=96.75 E-value=0.0045 Score=58.10 Aligned_cols=131 Identities=15% Similarity=0.060 Sum_probs=84.1
Q ss_pred HHHHHHHHHHH-HhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHC---CC------eeEEEEecCCCCCcchH
Q 017293 149 TNKAIGSYGAS-FLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSE---GV------LERAYCSETRPFNQGSR 218 (374)
Q Consensus 149 a~~~I~~~~~~-~i~~~~~~~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~---g~------~~~V~v~EsrP~~eG~~ 218 (374)
..++|++.+++ +|... +|++|..-+ | +|+..+++...+. +. +++| |+=| .+
T Consensus 21 ~K~~IA~~Aa~~~I~~~---dg~~IgLgs--G-------ST~~~~a~~L~~~~~~~~l~~~~~~itv-VTnS------~~ 81 (264)
T 1xtz_A 21 AKRAAAYRAVDENLKFD---DHKIIGIGS--G-------STVVYVAERIGQYLHDPKFYEVASKFIC-IPTG------FQ 81 (264)
T ss_dssp HHHHHHHHHHHHHCCTT---TCCEEEECC--C-------SSTHHHHHHHHHHHTSTTTHHHHTTCEE-EESS------HH
T ss_pred HHHHHHHHHHHhccCCC---CCCEEEEcC--h-------HHHHHHHHHHhHhhhccccccccCCEEE-ECCc------HH
Confidence 45678888888 77611 367776532 3 4777777666432 22 3665 4433 22
Q ss_pred hHHHHHhhCCCCeEEEcchHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHH-HHHhcCCeEEEeccCcccc-CC
Q 017293 219 LTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLAL-CAKFHNILFYVAAPLTSID-LT 296 (374)
Q Consensus 219 l~a~~L~~~GI~vtlI~Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~-~Ak~~~vPvyV~a~~~K~~-~~ 296 (374)
++.+|.+.||++..+ + .+ .++|+.|.|||.|-.+++++.--|-..+-- +......-|||++++.||. ..
T Consensus 82 -~a~~l~~~gi~v~~l-~-----~~--~~iD~afdGADgId~~~~likg~g~A~~kekiva~~A~~~IvlaD~SK~~~~~ 152 (264)
T 1xtz_A 82 -SRNLILDNKLQLGSI-E-----QY--PRIDIAFDGADEVDENLQLIKGGGACLFQEKLVSTSAKTFIVVADSRKKSPKH 152 (264)
T ss_dssp -HHHHHHHTTCEECCT-T-----TC--CSEEEEEECCSEECTTSCEECCTTSCHHHHHHHHTTEEEEEEEEEGGGBCSSS
T ss_pred -HHHHHHHCCCeEEEe-h-----hc--CcCCEEEECCcccCCCCCeecCHHHHHHHHHHHHHhhCcEEEEEEcccccccc
Confidence 356777889987766 2 22 589999999999998876665555544443 2445677999999999999 54
Q ss_pred CCCCC--cccccc
Q 017293 297 LSSGQ--EIVIEE 307 (374)
Q Consensus 297 ~~~~~--~i~ie~ 307 (374)
.-... .+|+|-
T Consensus 153 Lg~~~~~plPVEV 165 (264)
T 1xtz_A 153 LGKNWRQGVPIEI 165 (264)
T ss_dssp BTSSCCSCEEEEE
T ss_pred ccccCCCCEeEEE
Confidence 32122 466653
No 20
>3uw1_A Ribose-5-phosphate isomerase A; ssgcid, seattle structural genomics center for infectious DI isomerase, ribose isomerase; HET: R5P; 1.71A {Burkholderia thailandensis} PDB: 3u7j_A*
Probab=96.68 E-value=0.0079 Score=55.58 Aligned_cols=132 Identities=17% Similarity=0.120 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCC
Q 017293 150 NKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRI 229 (374)
Q Consensus 150 ~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI 229 (374)
.+.+++.+++++.+.+. +|++|-.- || ||+..+++...+..++++..|+-| . -++..|.+.||
T Consensus 15 K~~aA~~A~~~V~d~~~-~g~vIGLG--tG-------ST~~~~i~~L~~~~~~i~~~V~tS------~-~t~~~~~~~Gi 77 (239)
T 3uw1_A 15 KRLVGEAAARYVTDNVP-QGAVIGVG--TG-------STANCFIDALAAVKDRYRGAVSSS------V-ATTERLKSHGI 77 (239)
T ss_dssp HHHHHHHHHHHHHHHSC-TTCEEEEC--CS-------HHHHHHHHHHHTTGGGSCEEEESS------H-HHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhccCc-CCCEEEEC--cc-------HHHHHHHHHHHhhhccceEEeCCc------H-HHHHHHHHcCC
Confidence 34567777888882111 27877654 23 477777777655433555444433 1 24667889999
Q ss_pred CeEEEcchHHHHHHhcCCCCEEEEcceeeecCCCeeccccc-HHHHHHHHhcCCeEEEeccCccccCCCCCCCcccccc
Q 017293 230 PATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGT-YSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEE 307 (374)
Q Consensus 230 ~vtlI~Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT-~~lA~~Ak~~~vPvyV~a~~~K~~~~~~~~~~i~ie~ 307 (374)
++..+-+ ...+|+.|.|||-|-.++.++---|. +.-==+......-|||++...|+....- ...+|+|-
T Consensus 78 ~l~~l~~--------~~~iD~a~DGADeVd~~l~lIKGgGgal~rEKiva~~A~~~ivIaD~sK~v~~Lg-~~plPVEV 147 (239)
T 3uw1_A 78 RVFDLNE--------IESLQVYVDGADEIDESGAMIKGGGGALTREKIVASVAETFVCIADASKRVAMLG-QFPLPVEV 147 (239)
T ss_dssp CBCCGGG--------CSCEEEEEECCSEECTTCCEECCSSSCHHHHHHHHHHEEEEEEEEEGGGBCSSBT-SSCEEEEE
T ss_pred cEEeccc--------ccccCEEEECCcccCcccCEecCchHHHHHHHHHHHhCCcEEEEEecchhhhhcC-CCCeEEEE
Confidence 9875432 26899999999999888766542232 2111123334557899999999986542 23355553
No 21
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=86.76 E-value=2.2 Score=35.70 Aligned_cols=81 Identities=27% Similarity=0.293 Sum_probs=57.2
Q ss_pred HHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcc----------hHHHHHHhcCCCCEEEEcceeee
Q 017293 190 LGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIAD----------SAAAALMKDGRVSAVIVGADRVA 259 (374)
Q Consensus 190 ~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~D----------sav~~~m~~~~vd~VlvGAd~i~ 259 (374)
+.+.+..++ ..|++|.+++ |++.|.+.||+|+.+.. ..+...+++++||+||--.+.
T Consensus 40 ~~~a~~l~~--lGf~i~AT~G---------Ta~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt~~~-- 106 (143)
T 2yvq_A 40 LGVAEQLHN--EGFKLFATEA---------TSDWLNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINLPNN-- 106 (143)
T ss_dssp HHHHHHHHT--TTCEEEEEHH---------HHHHHHHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEECCCC--
T ss_pred HHHHHHHHH--CCCEEEECch---------HHHHHHHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEECCCC--
Confidence 344444443 4688887763 56779999999999963 447778899999999865432
Q ss_pred cCCCeecccccHHHHHHHHhcCCeEEE
Q 017293 260 ANGDTANKIGTYSLALCAKFHNILFYV 286 (374)
Q Consensus 260 ~nG~v~nkiGT~~lA~~Ak~~~vPvyV 286 (374)
.--..--.|.+=.+|-.|+||++-
T Consensus 107 ---~~~~~~d~~~iRR~Av~~~IP~~T 130 (143)
T 2yvq_A 107 ---NTKFVHDNYVIRRTAVDSGIPLLT 130 (143)
T ss_dssp ---CGGGHHHHHHHHHHHHHTTCCEEC
T ss_pred ---CCcCCccHHHHHHHHHHhCCCeEc
Confidence 111134567788889999999874
No 22
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=85.04 E-value=2.3 Score=36.27 Aligned_cols=74 Identities=18% Similarity=0.197 Sum_probs=54.0
Q ss_pred eeEEEEecCCCCCcchHhHHHHHhh-CCCCeEEEc------chHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHH
Q 017293 202 LERAYCSETRPFNQGSRLTAFELVH-DRIPATLIA------DSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLA 274 (374)
Q Consensus 202 ~~~V~v~EsrP~~eG~~l~a~~L~~-~GI~vtlI~------Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA 274 (374)
.|+++.+++ |++.|.+ .|++|+.+. |..++..+++++||+||-=-|-. |.-...--.+.+=
T Consensus 39 Gf~l~AT~g---------Ta~~L~e~~Gl~v~~v~k~~eGG~p~I~d~I~~geIdlVInt~~pl---~~~~h~~D~~~Ir 106 (152)
T 1b93_A 39 QHVLYATGT---------TGNLISRATGMNVNAMLSGPMGGDQQVGALISEGKIDVLIFFWDPL---NAVPHDPDVKALL 106 (152)
T ss_dssp TSEEEEETT---------HHHHHHHHHCCCCEEECCGGGTHHHHHHHHHHTTCCCEEEEECCTT---SCCTTHHHHHHHH
T ss_pred CCEEEEccH---------HHHHHHHHhCceeEEEEecCCCCCchHHHHHHCCCccEEEEcCCcc---cCCcccccHHHHH
Confidence 578898875 5777888 899999883 33578889999999997533300 3222234457788
Q ss_pred HHHHhcCCeEEEe
Q 017293 275 LCAKFHNILFYVA 287 (374)
Q Consensus 275 ~~Ak~~~vPvyV~ 287 (374)
.+|-.||||++--
T Consensus 107 R~A~~~~IP~~T~ 119 (152)
T 1b93_A 107 RLATVWNIPVATN 119 (152)
T ss_dssp HHHHHTTCCEESS
T ss_pred HHHHHcCCCEEeC
Confidence 8999999999853
No 23
>3ixq_A Ribose-5-phosphate isomerase A; structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; HET: PGO; 1.78A {Methanocaldococcus jannaschii}
Probab=78.10 E-value=6.5 Score=35.66 Aligned_cols=125 Identities=18% Similarity=0.149 Sum_probs=71.1
Q ss_pred HHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHH----CCCeeEEEEecCCCCCcchHhHHHHHhh
Q 017293 151 KAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHS----EGVLERAYCSETRPFNQGSRLTAFELVH 226 (374)
Q Consensus 151 ~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~----~g~~~~V~v~EsrP~~eG~~l~a~~L~~ 226 (374)
+..++.++++++ +|.+|=.- || ||+.-+++...+ .+. .+....|. . + ++..+.+
T Consensus 8 ~~aa~~A~~~V~-----~gmvvGlG--TG-------STv~~~I~~L~~~~~~~~l--~i~~v~tS---~--~-t~~~a~~ 65 (226)
T 3ixq_A 8 LKVAKEAVKLVK-----DGMVIGLG--TG-------STAALFIRELGNRIREEEL--TVFGIPTS---F--E-AKMLAMQ 65 (226)
T ss_dssp HHHHHHHGGGCC-----TTCEEEEC--CS-------HHHHHHHHHHHHHHHHHTC--CCEEEESS---H--H-HHHHHHH
T ss_pred HHHHHHHHHhCC-----CCCEEEeC--cH-------HHHHHHHHHHHHhhhhcCC--eeEeeccc---H--H-HHHHHHh
Confidence 445667788898 77765432 23 477767665532 233 34333331 1 1 3445668
Q ss_pred CCCCeEEEcchHHHHHHhcCCCCEEEEcceeeecCC-CeecccccHHHH--HHHHhcCCeEEEeccCccccCCCCCCCcc
Q 017293 227 DRIPATLIADSAAAALMKDGRVSAVIVGADRVAANG-DTANKIGTYSLA--LCAKFHNILFYVAAPLTSIDLTLSSGQEI 303 (374)
Q Consensus 227 ~GI~vtlI~Dsav~~~m~~~~vd~VlvGAd~i~~nG-~v~nkiGT~~lA--~~Ak~~~vPvyV~a~~~K~~~~~~~~~~i 303 (374)
.|||++-+.+ ..+|..|=|||-|-..+ ..+ |=|-..+- =+-.....-|+|++...|+....-....+
T Consensus 66 ~gi~l~~l~~---------~~iDl~iDGADEvd~~~l~lI-KGGGgAl~rEKivA~~a~~~I~I~D~sK~v~~LG~~fpl 135 (226)
T 3ixq_A 66 YEIPLVTLDE---------YDVDIAFDGADEVEETTLFLI-KGGGGCHTQEKIVDYNANEFVVLVDESKLVKKLGEKFPI 135 (226)
T ss_dssp TTCCBCCTTT---------CCCSEEEECCSEEETTTCCEE-CCTTSCHHHHHHHHHHSSEEEEEEEGGGEESSTTSSSCE
T ss_pred cCCCcccccc---------ccccEEEeCcchhccccceEE-ecchHHHHHHHHHHHHhhheEEEeccccchhhcCCCCCc
Confidence 8999865533 24999999999996432 233 32322111 12223466789999999997653222335
Q ss_pred cccc
Q 017293 304 VIEE 307 (374)
Q Consensus 304 ~ie~ 307 (374)
|+|-
T Consensus 136 PVEV 139 (226)
T 3ixq_A 136 PVEV 139 (226)
T ss_dssp EEEE
T ss_pred cEEE
Confidence 6653
No 24
>3rrl_B Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori} PDB: 3cdk_B
Probab=76.15 E-value=5.5 Score=35.58 Aligned_cols=98 Identities=23% Similarity=0.288 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCC-----cchHhHHHHH
Q 017293 150 NKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFN-----QGSRLTAFEL 224 (374)
Q Consensus 150 ~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~-----eG~~l~a~~L 224 (374)
++.|+..++..|+ ||++|-.-- |-.+... ..+. ++.+ .+..|+-... .+.... ..|
T Consensus 2 r~~Ia~raA~el~-----dG~~vnlGI--------GiP~~va--~~~~--~~~v-~l~~E~G~~g~~p~p~~~~~d-~~~ 62 (207)
T 3rrl_B 2 REAIIKRAAKELK-----EGMYVNLGI--------GLPTLVA--NEVS--GMNI-VFQSENGLLGIGAYPLEGSVD-ADL 62 (207)
T ss_dssp HHHHHHHHHTTCC-----TTCEEEECT--------TGGGGGG--GGGS--SSCC-EEEETTTEEEECCCCCTTCCC-TTC
T ss_pred hHHHHHHHHHhCC-----CCCEEEECC--------ChHHHHH--Hhcc--CCcE-EEEeccceecCcCCCCccccC-HhH
Confidence 5678999999999 888765521 2223221 1222 4433 4455654322 111111 124
Q ss_pred hhCCCC-e-----EEEcchH-HHHHHhcCCCCEEEEcceeeecCCCeec
Q 017293 225 VHDRIP-A-----TLIADSA-AAALMKDGRVSAVIVGADRVAANGDTAN 266 (374)
Q Consensus 225 ~~~GI~-v-----tlI~Dsa-v~~~m~~~~vd~VlvGAd~i~~nG~v~n 266 (374)
...|-. + .-+.|++ .+.+++.+++|..++||=-|-.+|.+.|
T Consensus 63 in~G~~~~t~~~~~~~~~~~~~F~~~~gG~~Dvailga~qVD~~Gnvn~ 111 (207)
T 3rrl_B 63 INAGKETITVVPGASFFNSADSFAMIRGGHIDLAILGGMEVSQNGDLAN 111 (207)
T ss_dssp BCTTSBBCCEEEEEEECCHHHHHHHHHTTCCSEEEECCSEEETTSCEEC
T ss_pred eecCCceeeecCCceeeCCHHHHHHHhCCCeeEEEECHHHHCcCCCccc
Confidence 444432 2 2233443 5556788999999999999999998864
No 25
>4gmk_A Ribose-5-phosphate isomerase A; D-ribose-5-phosphate isomerase family, ribose 5-phosphate isomerisation; 1.72A {Lactobacillus salivarius}
Probab=75.36 E-value=8.3 Score=35.02 Aligned_cols=122 Identities=17% Similarity=0.116 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHH----CCCeeEEEEecCCCCCcchHhHHHHHh
Q 017293 150 NKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHS----EGVLERAYCSETRPFNQGSRLTAFELV 225 (374)
Q Consensus 150 ~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~----~g~~~~V~v~EsrP~~eG~~l~a~~L~ 225 (374)
-+..++.++++++ +|.+|-.- || ||+.-+++...+ .+..+.. |.=| . -++..+.
T Consensus 8 K~~aa~~A~~~V~-----~gmvvGlG--TG-------STv~~~i~~L~~~~~~~~l~i~~-V~tS----~---~t~~~a~ 65 (228)
T 4gmk_A 8 KQLVGTKAVEWIK-----DGMIVGLG--TG-------STVKYMVDALGKRVNEEGLDIVG-VTTS----I---RTAEQAK 65 (228)
T ss_dssp HHHHHHHHGGGCC-----TTCEEEEC--CS-------HHHHHHHHHHHHHHHHHCCCCEE-EESS----H---HHHHHHH
T ss_pred HHHHHHHHHHhCC-----CCCEEEEC--ch-------HHHHHHHHHHHHHHhhcCCcEEE-EeCc----H---HHHHHHH
Confidence 3445667788888 77665442 23 477666655422 3433332 2222 1 2455678
Q ss_pred hCCCCeEEEcchHHHHHHhcCCCCEEEEcceeeecCCCeecccccH-----HHHHHHHhcCCeEEEeccCccccCCCCCC
Q 017293 226 HDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTY-----SLALCAKFHNILFYVAAPLTSIDLTLSSG 300 (374)
Q Consensus 226 ~~GI~vtlI~Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~-----~lA~~Ak~~~vPvyV~a~~~K~~~~~~~~ 300 (374)
+.|||+.-+.+ . +.+|..|=|||-|-+|...+--=|.. .+|.+ ..-|+|++...|+....- .
T Consensus 66 ~~Gi~l~~l~~------~--~~iD~~iDGADEvd~~l~lIKGGGgal~rEKivA~~----a~~fI~IaD~sK~v~~LG-~ 132 (228)
T 4gmk_A 66 SLGIVIKDIDE------V--DHIDLTIDGADEISSDFQGIKGGGAALLYEKIVATK----SNKNMWIVDESKMVDDLG-Q 132 (228)
T ss_dssp HTTCCBCCGGG------S--SCEEEEEECCSEECTTSCEECCTTSCHHHHHHHHHH----EEEEEEEEEGGGBCSSSC-S
T ss_pred HcCCceeChHH------C--CccceEeccHHHhhhchhhhhcchHHHHHHHHHHHh----hhheEEEeccccccCccC-C
Confidence 89999876554 2 78999999999999888766333322 23333 345899999999976532 1
Q ss_pred Cccccc
Q 017293 301 QEIVIE 306 (374)
Q Consensus 301 ~~i~ie 306 (374)
..+|+|
T Consensus 133 fplPVE 138 (228)
T 4gmk_A 133 FPLPVE 138 (228)
T ss_dssp SCEEEE
T ss_pred eeEEEE
Confidence 235555
No 26
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=75.04 E-value=5.9 Score=34.61 Aligned_cols=74 Identities=19% Similarity=0.224 Sum_probs=54.5
Q ss_pred eeEEEEecCCCCCcchHhHHHHHhh-CCCCeEEEc------chHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHH
Q 017293 202 LERAYCSETRPFNQGSRLTAFELVH-DRIPATLIA------DSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLA 274 (374)
Q Consensus 202 ~~~V~v~EsrP~~eG~~l~a~~L~~-~GI~vtlI~------Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA 274 (374)
.|++|.+++ |++.|.+ .||+|+.+. |..++..++.++||+||-=.|-. |.-...--.+.+=
T Consensus 55 Gf~L~AT~g---------Ta~~L~e~~Gl~v~~v~k~~eGG~pqI~d~I~~geIdlVInt~dPl---~~~~h~~D~~~IR 122 (178)
T 1vmd_A 55 KHELYATGT---------TGALLQEKLGLKVHRLKSGPLGGDQQIGAMIAEGKIDVLIFFWDPL---EPQAHDVDVKALI 122 (178)
T ss_dssp TSEEEECHH---------HHHHHHHHHCCCCEECSCGGGTHHHHHHHHHHTTSCCEEEEECCSS---SCCTTSCCHHHHH
T ss_pred CCEEEEchH---------HHHHHHHHhCceeEEEeecCCCCCchHHHHHHCCCccEEEEccCcc---CCCcccccHHHHH
Confidence 578887764 6777888 999999883 34578889999999998543310 3222245568888
Q ss_pred HHHHhcCCeEEEe
Q 017293 275 LCAKFHNILFYVA 287 (374)
Q Consensus 275 ~~Ak~~~vPvyV~ 287 (374)
.+|-.||||++--
T Consensus 123 R~A~~~~IP~~Tn 135 (178)
T 1vmd_A 123 RIATVYNIPVAIT 135 (178)
T ss_dssp HHHHHTTCCEESS
T ss_pred HHHHHcCCCEEeC
Confidence 8999999999853
No 27
>1poi_B Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} SCOP: c.124.1.3
Probab=74.06 E-value=10 Score=35.00 Aligned_cols=95 Identities=9% Similarity=0.057 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHC-CCeeEEEEecC-----CCCC---cchHh
Q 017293 149 TNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSE-GVLERAYCSET-----RPFN---QGSRL 219 (374)
Q Consensus 149 a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~-g~~~~V~v~Es-----rP~~---eG~~l 219 (374)
..+.|+.++++.|. ||++|-+- .|.-..+...+.+. ++.+.+. .|+ .|.. .+..
T Consensus 7 ~~e~Ia~~aA~~i~-----dG~~v~lG----------iGiP~~va~~~~~~~~~~l~l~-~E~G~lg~~p~~~~~~~~d- 69 (260)
T 1poi_B 7 NKEMQAVTIAKQIK-----NGQVVTVG----------TGLPLIGASVAKRVYAPDCHII-VESGLMDCSPVEVPRSVGD- 69 (260)
T ss_dssp HHHHHHHHHHTTCC-----TTCEEECC----------SSHHHHHHHHHHHTTCTTCEEE-ETTTEEEECCSSCCSSTTC-
T ss_pred HHHHHHHHHHHhCC-----CCCEEEeC----------CCHHHHHHHHHHHhcCCCEEEE-EeCceecCcccCcccCccC-
Confidence 45688999999999 89887652 24222233444332 3344433 344 3321 1111
Q ss_pred HHHHHhhCCCCeEEEcch-HHHHH-----HhcCCCCEEEEcceeeecCCCee
Q 017293 220 TAFELVHDRIPATLIADS-AAAAL-----MKDGRVSAVIVGADRVAANGDTA 265 (374)
Q Consensus 220 ~a~~L~~~GI~vtlI~Ds-av~~~-----m~~~~vd~VlvGAd~i~~nG~v~ 265 (374)
..+.. ...-+.++ ..+.+ ++.+++|..|+||=-|-.+|.+.
T Consensus 70 --~~~~~---~a~~~~~~~~~fd~~~~~~~~~g~~Dv~ilGa~qVD~~Gnvn 116 (260)
T 1poi_B 70 --LRFMA---HCGCIWPNVRFVGFEINEYLHKANRLIAFIGGAQIDPYGNVN 116 (260)
T ss_dssp --HHHHT---SEEEECCHHHHHHHHHHHHHHTCCCEEEEECCSEECTTCCEE
T ss_pred --CCcEe---ehhhhcCHHHHhcccchhhhhcCCccEEEeChHHhCCCCCcc
Confidence 01211 23244444 33445 77899999999999999999987
No 28
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=72.15 E-value=6.1 Score=32.89 Aligned_cols=73 Identities=16% Similarity=0.161 Sum_probs=50.7
Q ss_pred eeEEEEecCCCCCcchHhHHHHHhh-CCCCeEEEc------chHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHH
Q 017293 202 LERAYCSETRPFNQGSRLTAFELVH-DRIPATLIA------DSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLA 274 (374)
Q Consensus 202 ~~~V~v~EsrP~~eG~~l~a~~L~~-~GI~vtlI~------Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA 274 (374)
.|++|.+++ |++.|.+ .|++|+.+. |..++..+++++||+||-=-|-. |.-...--.+.+=
T Consensus 31 Gf~l~AT~g---------Ta~~L~e~~Gl~v~~v~k~~~eG~p~I~d~I~~geIdlVInt~~pl---~~~~h~~D~~~Ir 98 (134)
T 2xw6_A 31 RFPLVATGT---------TGRRIEEATGLTVEKLLSGPLGGDQQMGARVAEGRILAVIFFRDPL---TAQPHEPDVQALL 98 (134)
T ss_dssp TSCEEECHH---------HHHHHHHHHCCCCEECSCGGGTHHHHHHHHHHTTCEEEEEEECCTT---TCCTTSCCSHHHH
T ss_pred CCEEEEccH---------HHHHHHHhhCceEEEEEecCCCCcchHHHHHHCCCccEEEEccCcc---cCCCccchHHHHH
Confidence 467776653 5667777 888888874 23478889999999998533300 3222244557888
Q ss_pred HHHHhcCCeEEE
Q 017293 275 LCAKFHNILFYV 286 (374)
Q Consensus 275 ~~Ak~~~vPvyV 286 (374)
.+|-.|+||++-
T Consensus 99 R~A~~~~IP~~T 110 (134)
T 2xw6_A 99 RVCDVHGVPLAT 110 (134)
T ss_dssp HHHHHHTCCEEC
T ss_pred HHHHHcCCCeEc
Confidence 899999999985
No 29
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=70.00 E-value=6.6 Score=31.80 Aligned_cols=80 Identities=16% Similarity=0.100 Sum_probs=54.3
Q ss_pred CCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEE-cchH-HHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHH
Q 017293 200 GVLERAYCSETRPFNQGSRLTAFELVHDRIPATLI-ADSA-AAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCA 277 (374)
Q Consensus 200 g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI-~Dsa-v~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~A 277 (374)
.++.+|.|+|-.|...- +....|.+.|..|+-. .+.. +-..+++.++|.|++ |--+++++ | +.++-.-
T Consensus 6 ~r~~rILiVdD~~~~~~--~l~~~L~~~G~~v~~~a~~g~eAl~~~~~~~~Dlvll--Di~mP~~~-----G-~el~~~l 75 (123)
T 2lpm_A 6 ERRLRVLVVEDESMIAM--LIEDTLCELGHEVAATASRMQEALDIARKGQFDIAII--DVNLDGEP-----S-YPVADIL 75 (123)
T ss_dssp CCCCCEEEESSSTTTSH--HHHHHHHHHCCCCCBCSCCHHHHHHHHHHCCSSEEEE--CSSSSSCC-----S-HHHHHHH
T ss_pred CCCCEEEEEeCCHHHHH--HHHHHHHHCCCEEEEEECCHHHHHHHHHhCCCCEEEE--ecCCCCCC-----H-HHHHHHH
Confidence 46788999999887642 3466788999998644 4433 223456788999988 55555432 3 4555556
Q ss_pred HhcCCeEEEecc
Q 017293 278 KFHNILFYVAAP 289 (374)
Q Consensus 278 k~~~vPvyV~a~ 289 (374)
+..++||++++.
T Consensus 76 r~~~ipvI~lTa 87 (123)
T 2lpm_A 76 AERNVPFIFATG 87 (123)
T ss_dssp HHTCCSSCCBCT
T ss_pred HcCCCCEEEEec
Confidence 778999988764
No 30
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=69.95 E-value=38 Score=26.62 Aligned_cols=60 Identities=7% Similarity=0.066 Sum_probs=36.1
Q ss_pred HhhCCC-CeEEE--cchH---HHH-HHhcCCCCEEEEcceeeecCCCeec-ccccHHHHHHHHhcCCeEEEe
Q 017293 224 LVHDRI-PATLI--ADSA---AAA-LMKDGRVSAVIVGADRVAANGDTAN-KIGTYSLALCAKFHNILFYVA 287 (374)
Q Consensus 224 L~~~GI-~vtlI--~Dsa---v~~-~m~~~~vd~VlvGAd~i~~nG~v~n-kiGT~~lA~~Ak~~~vPvyV~ 287 (374)
+.+.|+ ++... .... +.. +.++.++|.+++|+..- |.+-. -.|+..-.+ .++-++||+|+
T Consensus 78 ~~~~g~~~~~~~~~~g~~~~~I~~~~a~~~~~dliV~G~~~~---~~~~~~~~Gs~~~~v-l~~~~~pVlvV 145 (146)
T 3s3t_A 78 VATTSAPNLKTEISYGIPKHTIEDYAKQHPEIDLIVLGATGT---NSPHRVAVGSTTSYV-VDHAPCNVIVI 145 (146)
T ss_dssp HTTSSCCCCEEEEEEECHHHHHHHHHHHSTTCCEEEEESCCS---SCTTTCSSCHHHHHH-HHHCSSEEEEE
T ss_pred HHhcCCcceEEEEecCChHHHHHHHHHhhcCCCEEEECCCCC---CCcceEEEcchHHHH-hccCCCCEEEe
Confidence 456788 65543 2222 233 33457999999999863 22222 256655444 56667999986
No 31
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=68.82 E-value=15 Score=32.86 Aligned_cols=71 Identities=18% Similarity=0.200 Sum_probs=44.4
Q ss_pred ccccHHHHHHHHHHCCCeeEEEEec-CCCCCcchHhHHHHHhhCCCCeEEEc----------chHHHHHHhcCCCCEEEE
Q 017293 185 GYGTALGVIRALHSEGVLERAYCSE-TRPFNQGSRLTAFELVHDRIPATLIA----------DSAAAALMKDGRVSAVIV 253 (374)
Q Consensus 185 g~~tv~~~l~~a~~~g~~~~V~v~E-srP~~eG~~l~a~~L~~~GI~vtlI~----------Dsav~~~m~~~~vd~Vlv 253 (374)
|.|+-+..|..+.++|....|..+= .+|...|.+. -.+.|||+..+. |..+...+++.++|.+++
T Consensus 14 G~Gsnl~all~~~~~~~~~eI~~Vis~~~~a~~~~~----A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~ 89 (215)
T 3tqr_A 14 GNGTNLQAIIGAIQKGLAIEIRAVISNRADAYGLKR----AQQADIPTHIIPHEEFPSRTDFESTLQKTIDHYDPKLIVL 89 (215)
T ss_dssp SCCHHHHHHHHHHHTTCSEEEEEEEESCTTCHHHHH----HHHTTCCEEECCGGGSSSHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCcHHHHHHHHHHHcCCCCEEEEEEeCCcchHHHHH----HHHcCCCEEEeCccccCchhHhHHHHHHHHHhcCCCEEEE
Confidence 4466666555555544434444332 3676656432 347899999874 456677788889999988
Q ss_pred cce-eee
Q 017293 254 GAD-RVA 259 (374)
Q Consensus 254 GAd-~i~ 259 (374)
.+= +|+
T Consensus 90 agy~~il 96 (215)
T 3tqr_A 90 AGFMRKL 96 (215)
T ss_dssp SSCCSCC
T ss_pred ccchhhC
Confidence 663 444
No 32
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=60.73 E-value=19 Score=32.08 Aligned_cols=67 Identities=9% Similarity=0.049 Sum_probs=41.9
Q ss_pred ccccHHHHHHHHHHCCC-eeEEEEe-cCCCCCcchHhHHHHHhhCCCCeEEEc----------chHHHHHHhcCCCCEEE
Q 017293 185 GYGTALGVIRALHSEGV-LERAYCS-ETRPFNQGSRLTAFELVHDRIPATLIA----------DSAAAALMKDGRVSAVI 252 (374)
Q Consensus 185 g~~tv~~~l~~a~~~g~-~~~V~v~-EsrP~~eG~~l~a~~L~~~GI~vtlI~----------Dsav~~~m~~~~vd~Vl 252 (374)
|.|+.+..|..+.++|. ..+|..+ =.+|...|.+. -.+.|||+..+. |..+...+++.++|.++
T Consensus 16 G~gsnl~all~~~~~~~l~~~I~~Visn~~~a~~l~~----A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv 91 (209)
T 4ds3_A 16 GGGSNMEALIRAAQAPGFPAEIVAVFSDKAEAGGLAK----AEAAGIATQVFKRKDFASKEAHEDAILAALDVLKPDIIC 91 (209)
T ss_dssp SCCHHHHHHHHHHTSTTCSEEEEEEEESCTTCTHHHH----HHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHHCCSEEE
T ss_pred CCcHHHHHHHHHHHcCCCCcEEEEEEECCcccHHHHH----HHHcCCCEEEeCccccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 44666655555555553 3343322 24777666432 357899999875 35566677778999988
Q ss_pred Ecc
Q 017293 253 VGA 255 (374)
Q Consensus 253 vGA 255 (374)
+.+
T Consensus 92 ~ag 94 (209)
T 4ds3_A 92 LAG 94 (209)
T ss_dssp ESS
T ss_pred Eec
Confidence 766
No 33
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=60.15 E-value=27 Score=32.28 Aligned_cols=114 Identities=18% Similarity=0.215 Sum_probs=65.1
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHH---HH---CCCeeEEEEe-cCC---CCCcchHhHHHHHhhCCCCeE-EEcc
Q 017293 168 SKFSVLTHCNTGSLATAGYGTALGVIRAL---HS---EGVLERAYCS-ETR---PFNQGSRLTAFELVHDRIPAT-LIAD 236 (374)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~tv~~~l~~a---~~---~g~~~~V~v~-Esr---P~~eG~~l~a~~L~~~GI~vt-lI~D 236 (374)
.+.++|-- |+|-.|+...++.| .+ ...-+++.|. |.+ |...+.--.+++|.+.|+.|. |+.|
T Consensus 72 ~~~~~lpN-------Tag~~ta~eAv~~a~lare~~~~~~~iKlEv~~d~~~llpD~~~tv~aa~~L~~~Gf~Vlpy~~d 144 (265)
T 1wv2_A 72 DRYTILPN-------TAGCYDAVEAVRTCRLARELLDGHNLVKLEVLADQKTLFPNVVETLKAAEQLVKDGFDVMVYTSD 144 (265)
T ss_dssp TTSEEEEE-------CTTCCSHHHHHHHHHHHHTTTTSCCEEEECCBSCTTTCCBCHHHHHHHHHHHHTTTCEEEEEECS
T ss_pred cCCEECCc-------CCCCCCHHHHHHHHHHHHHHcCCCCeEEEEeecCccccCcCHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 36677643 23456787655444 44 2335677666 544 333332224778999999988 5665
Q ss_pred h-HHHHHHhcCCCCEEEE-cceeeecCCCeecccccHHHHHHHHhcCCeEEEeccCcc
Q 017293 237 S-AAAALMKDGRVSAVIV-GADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTS 292 (374)
Q Consensus 237 s-av~~~m~~~~vd~Vlv-GAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~K 292 (374)
+ ..+.-+..-.++.|+- |+. |-.+=++.| -..+..+.+..++||++-+.-.+
T Consensus 145 d~~~akrl~~~G~~aVmPlg~p-IGsG~Gi~~---~~lI~~I~e~~~vPVI~eGGI~T 198 (265)
T 1wv2_A 145 DPIIARQLAEIGCIAVMPLAGL-IGSGLGICN---PYNLRIILEEAKVPVLVDAGVGT 198 (265)
T ss_dssp CHHHHHHHHHSCCSEEEECSSS-TTCCCCCSC---HHHHHHHHHHCSSCBEEESCCCS
T ss_pred CHHHHHHHHHhCCCEEEeCCcc-CCCCCCcCC---HHHHHHHHhcCCCCEEEeCCCCC
Confidence 5 4455565566776655 331 111101222 34566777778999999765443
No 34
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=59.37 E-value=19 Score=29.73 Aligned_cols=65 Identities=14% Similarity=0.063 Sum_probs=35.3
Q ss_pred HhhCCCCeEEEc--c---hHHHHHHhcCCCCEEEEcceeeecCCCeec-ccccHHHHHHHHhcCCeEEEeccCcc
Q 017293 224 LVHDRIPATLIA--D---SAAAALMKDGRVSAVIVGADRVAANGDTAN-KIGTYSLALCAKFHNILFYVAAPLTS 292 (374)
Q Consensus 224 L~~~GI~vtlI~--D---sav~~~m~~~~vd~VlvGAd~i~~nG~v~n-kiGT~~lA~~Ak~~~vPvyV~a~~~K 292 (374)
+...|+++.... . ..+..+.++.++|+||+|+..- |++-. -.|+-.-.+ .++-++||+|+-+..+
T Consensus 96 ~~~~g~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~---~~~~~~~~Gsva~~v-l~~a~~pVlvv~~~~~ 166 (175)
T 2gm3_A 96 CHEIGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRGL---GRFQKVFVGTVSAFC-VKHAECPVMTIKRNAD 166 (175)
T ss_dssp HHHHTCEEEEEEEESCHHHHHHHHHHHHCCSEEEEEECCC---C--------CHHHHH-HHHCSSCEEEEECCGG
T ss_pred HHHCCCceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCCC---ChhhhhhcCchHHHH-HhCCCCCEEEEcCCcC
Confidence 445677765332 2 2223333445899999999863 22222 257655544 4556799999855433
No 35
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=58.25 E-value=55 Score=30.17 Aligned_cols=103 Identities=16% Similarity=0.076 Sum_probs=59.1
Q ss_pred cEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHh-HHHHHhhCCCCeEEEc--c-hHHHHHHhc
Q 017293 170 FSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRL-TAFELVHDRIPATLIA--D-SAAAALMKD 245 (374)
Q Consensus 170 ~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l-~a~~L~~~GI~vtlI~--D-sav~~~m~~ 245 (374)
.+||..+-+|.+ | ..+++.+.+.|. +|+++--.|.....++ ....|...|+.+...- | ..+..++++
T Consensus 11 ~~IlVtGatG~i-----G--~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~ 81 (346)
T 3i6i_A 11 GRVLIAGATGFI-----G--QFVATASLDAHR--PTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKE 81 (346)
T ss_dssp CCEEEECTTSHH-----H--HHHHHHHHHTTC--CEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHH
T ss_pred CeEEEECCCcHH-----H--HHHHHHHHHCCC--CEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhh
Confidence 356666655432 2 234556666674 5555544332211111 1235667777655432 2 345556633
Q ss_pred CCCCEEEEcceeeecCCCeecccccHHHHHHHHhcC-CeEEEec
Q 017293 246 GRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHN-ILFYVAA 288 (374)
Q Consensus 246 ~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~-vPvyV~a 288 (374)
.++|.|| .+.+..|-.|+..+.-+|+..+ ++.+|.+
T Consensus 82 ~~~d~Vi-------~~a~~~n~~~~~~l~~aa~~~g~v~~~v~S 118 (346)
T 3i6i_A 82 HEIDIVV-------STVGGESILDQIALVKAMKAVGTIKRFLPS 118 (346)
T ss_dssp TTCCEEE-------ECCCGGGGGGHHHHHHHHHHHCCCSEEECS
T ss_pred CCCCEEE-------ECCchhhHHHHHHHHHHHHHcCCceEEeec
Confidence 3565554 4444568999999999999999 9988853
No 36
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=58.03 E-value=22 Score=31.74 Aligned_cols=71 Identities=14% Similarity=0.108 Sum_probs=42.7
Q ss_pred ccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEc----------chHHHHHHhcCCCCEEEEc
Q 017293 185 GYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIA----------DSAAAALMKDGRVSAVIVG 254 (374)
Q Consensus 185 g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~----------Dsav~~~m~~~~vd~VlvG 254 (374)
|.|+.+..|..+.+++....|..+=|.|...+.+ .-.+.|||+..+. |..+...+++.++|.+++.
T Consensus 21 G~gsnl~all~~~~~~~~~eI~~Vis~~~a~~~~----~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dlivla 96 (215)
T 3da8_A 21 GTGSLLRSLLDAAVGDYPARVVAVGVDRECRAAE----IAAEASVPVFTVRLADHPSRDAWDVAITAATAAHEPDLVVSA 96 (215)
T ss_dssp SCCHHHHHHHHHSSTTCSEEEEEEEESSCCHHHH----HHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CChHHHHHHHHHHhccCCCeEEEEEeCCchHHHH----HHHHcCCCEEEeCcccccchhhhhHHHHHHHHhhCCCEEEEc
Confidence 4466665444444333334554444444443322 2457899999885 4566777888899998886
Q ss_pred ce-eee
Q 017293 255 AD-RVA 259 (374)
Q Consensus 255 Ad-~i~ 259 (374)
+= .|+
T Consensus 97 gy~~iL 102 (215)
T 3da8_A 97 GFMRIL 102 (215)
T ss_dssp ECCSCC
T ss_pred CchhhC
Confidence 53 444
No 37
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=57.60 E-value=23 Score=26.90 Aligned_cols=79 Identities=9% Similarity=0.071 Sum_probs=49.7
Q ss_pred eEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHH-HHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcC
Q 017293 203 ERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHN 281 (374)
Q Consensus 203 ~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~-~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~ 281 (374)
.+|.++|..|.... .....|.+.|..|....+..-+ ..+++.+.|.|++..+ ++++ -|--.+..+-+.++
T Consensus 3 ~~ilivdd~~~~~~--~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlii~D~~--~p~~-----~g~~~~~~lr~~~~ 73 (120)
T 3f6p_A 3 KKILVVDDEKPIAD--ILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIM--LPNK-----DGVEVCREVRKKYD 73 (120)
T ss_dssp CEEEEECSCHHHHH--HHHHHHHHTTCEEEEESSHHHHHHHHHTTCCSEEEEETT--STTT-----HHHHHHHHHHTTCC
T ss_pred CeEEEEECCHHHHH--HHHHHHHhCCEEEEEeCCHHHHHHHHhhCCCCEEEEeCC--CCCC-----CHHHHHHHHHhcCC
Confidence 36778887765422 2355688889888876665433 2345678999988543 3332 34444445555678
Q ss_pred CeEEEeccC
Q 017293 282 ILFYVAAPL 290 (374)
Q Consensus 282 vPvyV~a~~ 290 (374)
+|+++++..
T Consensus 74 ~~ii~~t~~ 82 (120)
T 3f6p_A 74 MPIIMLTAK 82 (120)
T ss_dssp SCEEEEEES
T ss_pred CCEEEEECC
Confidence 999988653
No 38
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=57.42 E-value=26 Score=27.60 Aligned_cols=61 Identities=13% Similarity=0.212 Sum_probs=36.5
Q ss_pred HHhhCCCCe---EE-Ecc----hHHHHHHhcCCCCEEEEcceeeecCCCeec-ccccHHHHHHHHhcCCeEEEe
Q 017293 223 ELVHDRIPA---TL-IAD----SAAAALMKDGRVSAVIVGADRVAANGDTAN-KIGTYSLALCAKFHNILFYVA 287 (374)
Q Consensus 223 ~L~~~GI~v---tl-I~D----sav~~~m~~~~vd~VlvGAd~i~~nG~v~n-kiGT~~lA~~Ak~~~vPvyV~ 287 (374)
.+.+.|+++ .. +.. ..+....++.++|.+++|+..- |++-. -.|+..-.+ .++-++||+|+
T Consensus 78 ~~~~~g~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~---~~~~~~~~Gs~~~~v-l~~~~~pVlvV 147 (147)
T 3hgm_A 78 RATELGVPADKVRAFVKGGRPSRTIVRFARKRECDLVVIGAQGT---NGDKSLLLGSVAQRV-AGSAHCPVLVV 147 (147)
T ss_dssp HHHHTTCCGGGEEEEEEESCHHHHHHHHHHHTTCSEEEECSSCT---TCCSCCCCCHHHHHH-HHHCSSCEEEC
T ss_pred HHHhcCCCccceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCCC---ccccceeeccHHHHH-HhhCCCCEEEC
Confidence 355678876 33 222 2233334456999999999752 33333 246655444 55667999985
No 39
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=55.86 E-value=34 Score=29.63 Aligned_cols=107 Identities=14% Similarity=0.125 Sum_probs=58.4
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcch--HHHHHHhc
Q 017293 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADS--AAAALMKD 245 (374)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Ds--av~~~m~~ 245 (374)
.+.+||..+-+|.+ | ..+.+.+.++|. +|+++.-+|. + ..++.+.|+...+..|- .+...+
T Consensus 20 ~~~~ilVtGatG~i-----G--~~l~~~L~~~G~--~V~~~~R~~~----~--~~~~~~~~~~~~~~~Dl~~~~~~~~-- 82 (236)
T 3e8x_A 20 QGMRVLVVGANGKV-----A--RYLLSELKNKGH--EPVAMVRNEE----Q--GPELRERGASDIVVANLEEDFSHAF-- 82 (236)
T ss_dssp -CCEEEEETTTSHH-----H--HHHHHHHHHTTC--EEEEEESSGG----G--HHHHHHTTCSEEEECCTTSCCGGGG--
T ss_pred CCCeEEEECCCChH-----H--HHHHHHHHhCCC--eEEEEECChH----H--HHHHHhCCCceEEEcccHHHHHHHH--
Confidence 35677776655432 2 334566666664 5666644332 2 23466667722233442 233344
Q ss_pred CCCCEEEEcceeeecCC----CeecccccHHHHHHHHhcCCeEEEeccCc
Q 017293 246 GRVSAVIVGADRVAANG----DTANKIGTYSLALCAKFHNILFYVAAPLT 291 (374)
Q Consensus 246 ~~vd~VlvGAd~i~~nG----~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~ 291 (374)
+++|.||--|-....+. --+|-.|+..+.-+|+..+++-+|...++
T Consensus 83 ~~~D~vi~~ag~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~ 132 (236)
T 3e8x_A 83 ASIDAVVFAAGSGPHTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSV 132 (236)
T ss_dssp TTCSEEEECCCCCTTSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCT
T ss_pred cCCCEEEECCCCCCCCCccccchhhHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 56777665543211000 01378899999999999998777665554
No 40
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=55.37 E-value=28 Score=30.82 Aligned_cols=67 Identities=18% Similarity=0.200 Sum_probs=40.2
Q ss_pred ccccHHHHHHHHHHCCC-eeEEEEec-CCCCCcchHhHHHHHhhCCCCeEEEc----------chHHHHHHhcCCCCEEE
Q 017293 185 GYGTALGVIRALHSEGV-LERAYCSE-TRPFNQGSRLTAFELVHDRIPATLIA----------DSAAAALMKDGRVSAVI 252 (374)
Q Consensus 185 g~~tv~~~l~~a~~~g~-~~~V~v~E-srP~~eG~~l~a~~L~~~GI~vtlI~----------Dsav~~~m~~~~vd~Vl 252 (374)
|.|+.+..|..+.++|. ...|..+= .+|...|.+ ...+.|||+.++. |..+...++..++|.++
T Consensus 9 G~Gs~L~aLi~~~~~~~~~~~I~~Vvs~~~~~~~~~----~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv 84 (209)
T 1meo_A 9 GTGSNLQALIDSTREPNSSAQIDIVISNKAAVAGLD----KAERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFSIDIVC 84 (209)
T ss_dssp SSCTTHHHHHHHHHSTTCSCEEEEEEESSTTCHHHH----HHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCchHHHHHHHHHhcCCCCcEEEEEEeCCCChHHHH----HHHHcCCCEEEECccccCchhhhhHHHHHHHHhcCCCEEE
Confidence 45666665555555553 34443332 334455543 2467899998764 24556667778999888
Q ss_pred Ecc
Q 017293 253 VGA 255 (374)
Q Consensus 253 vGA 255 (374)
+.+
T Consensus 85 ~a~ 87 (209)
T 1meo_A 85 LAG 87 (209)
T ss_dssp EES
T ss_pred Ecc
Confidence 765
No 41
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=55.30 E-value=63 Score=24.14 Aligned_cols=96 Identities=15% Similarity=0.096 Sum_probs=57.2
Q ss_pred CcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEc--c-hHHHHHHhc
Q 017293 169 KFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIA--D-SAAAALMKD 245 (374)
Q Consensus 169 ~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~--D-sav~~~m~~ 245 (374)
+.+|+..+- |.+ -..+.+.+.+.| ..+|++.+-.|. + ...+...|+...... | ..+...+
T Consensus 5 ~~~v~I~G~-G~i-------G~~~~~~l~~~g-~~~v~~~~r~~~----~--~~~~~~~~~~~~~~d~~~~~~~~~~~-- 67 (118)
T 3ic5_A 5 RWNICVVGA-GKI-------GQMIAALLKTSS-NYSVTVADHDLA----A--LAVLNRMGVATKQVDAKDEAGLAKAL-- 67 (118)
T ss_dssp CEEEEEECC-SHH-------HHHHHHHHHHCS-SEEEEEEESCHH----H--HHHHHTTTCEEEECCTTCHHHHHHHT--
T ss_pred cCeEEEECC-CHH-------HHHHHHHHHhCC-CceEEEEeCCHH----H--HHHHHhCCCcEEEecCCCHHHHHHHH--
Confidence 356766654 422 233455666666 356777765432 2 234556676653321 2 3455566
Q ss_pred CCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccCc
Q 017293 246 GRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLT 291 (374)
Q Consensus 246 ~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~ 291 (374)
.++|.|+..+ | ...+..++..|...+++++.++...
T Consensus 68 ~~~d~vi~~~------~----~~~~~~~~~~~~~~g~~~~~~~~~~ 103 (118)
T 3ic5_A 68 GGFDAVISAA------P----FFLTPIIAKAAKAAGAHYFDLTEDV 103 (118)
T ss_dssp TTCSEEEECS------C----GGGHHHHHHHHHHTTCEEECCCSCH
T ss_pred cCCCEEEECC------C----chhhHHHHHHHHHhCCCEEEecCcH
Confidence 6888888765 2 1235788889999999999876543
No 42
>3cwc_A Putative glycerate kinase 2; structural genomics, center for structural genomics of infec diseases, csgid, IDP122, transferase; 2.23A {Salmonella typhimurium LT2}
Probab=55.05 E-value=6.4 Score=38.52 Aligned_cols=49 Identities=22% Similarity=0.125 Sum_probs=33.8
Q ss_pred HHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccCccc
Q 017293 241 ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSI 293 (374)
Q Consensus 241 ~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~K~ 293 (374)
..+ ...|+||.|==++ |.....---...+|-.||.|+|||+++|.+...
T Consensus 283 ~~l--~~ADLVITGEG~~--D~Qtl~GK~p~gVa~~A~~~~vPviaiaG~~~~ 331 (383)
T 3cwc_A 283 ACL--ADADLVITGEGRI--DSQTIHGKVPIGVANIAKRYNKPVIGIAGSLTA 331 (383)
T ss_dssp HHH--HHCSEEEECCEES--CC----CHHHHHHHHHHHHTTCCEEEEEEECC-
T ss_pred hhh--cCCCEEEECCCCC--cCcCCCCcHHHHHHHHHHHhCCCEEEEeCCCCC
Confidence 445 6899999998655 233333233467888999999999999987653
No 43
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=54.54 E-value=43 Score=29.79 Aligned_cols=70 Identities=16% Similarity=0.231 Sum_probs=43.7
Q ss_pred ccccHHHHHHHHHHCCC---eeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEc----------chHHHHHHhcCCCCEE
Q 017293 185 GYGTALGVIRALHSEGV---LERAYCSETRPFNQGSRLTAFELVHDRIPATLIA----------DSAAAALMKDGRVSAV 251 (374)
Q Consensus 185 g~~tv~~~l~~a~~~g~---~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~----------Dsav~~~m~~~~vd~V 251 (374)
|.|+.+..|..+.+.|. .+.++++ .+|...+.+ .-.+.|||+..+. |..+...++..++|.+
T Consensus 11 g~Gsnl~ali~~~~~~~l~~eI~~Vis-n~~~a~v~~----~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dli 85 (211)
T 3p9x_A 11 GSGTNAEAIIQSQKAGQLPCEVALLIT-DKPGAKVVE----RVKVHEIPVCALDPKTYPSKEAYEIEVVQQLKEKQIDFV 85 (211)
T ss_dssp TTCHHHHHHHHHHHTTCCSSEEEEEEE-SCSSSHHHH----HHHTTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCchHHHHHHHHHHcCCCCcEEEEEEE-CCCCcHHHH----HHHHcCCCEEEeChhhcCchhhhHHHHHHHHHhcCCCEE
Confidence 45676666656665554 3444444 466554332 2357899998875 3456667778899998
Q ss_pred EEcce-eee
Q 017293 252 IVGAD-RVA 259 (374)
Q Consensus 252 lvGAd-~i~ 259 (374)
++.+= +|+
T Consensus 86 v~agy~~Il 94 (211)
T 3p9x_A 86 VLAGYMRLV 94 (211)
T ss_dssp EESSCCSCC
T ss_pred EEeCchhhc
Confidence 87653 444
No 44
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=54.40 E-value=37 Score=27.39 Aligned_cols=61 Identities=16% Similarity=0.170 Sum_probs=37.1
Q ss_pred HhhCCCCeEEEc--c---hHHHHHHhcCCCCEEEEcceeeecCCCeec-ccccHHHHHHHHhcCCeEEEec
Q 017293 224 LVHDRIPATLIA--D---SAAAALMKDGRVSAVIVGADRVAANGDTAN-KIGTYSLALCAKFHNILFYVAA 288 (374)
Q Consensus 224 L~~~GI~vtlI~--D---sav~~~m~~~~vd~VlvGAd~i~~nG~v~n-kiGT~~lA~~Ak~~~vPvyV~a 288 (374)
+...|++++... . ..+..+.++.++|.+++|+..- |++-. -.|+-.-.+ .++-.+||+|+-
T Consensus 92 ~~~~g~~~~~~v~~G~~~~~I~~~a~~~~~dlIV~G~~g~---~~~~~~~~GSv~~~v-l~~~~~pVlvv~ 158 (162)
T 1mjh_A 92 LEDVGFKVKDIIVVGIPHEEIVKIAEDEGVDIIIMGSHGK---TNLKEILLGSVTENV-IKKSNKPVLVVK 158 (162)
T ss_dssp HHHTTCEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCS---SCCTTCSSCHHHHHH-HHHCCSCEEEEC
T ss_pred HHHcCCceEEEEcCCCHHHHHHHHHHHcCCCEEEEcCCCC---CCccceEecchHHHH-HHhCCCCEEEEe
Confidence 456788765432 1 2233344557999999999863 22222 256655444 455689999983
No 45
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=54.19 E-value=85 Score=25.34 Aligned_cols=62 Identities=8% Similarity=0.103 Sum_probs=38.5
Q ss_pred HHhhCCCCeEE---Ecc----hHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEe
Q 017293 223 ELVHDRIPATL---IAD----SAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (374)
Q Consensus 223 ~L~~~GI~vtl---I~D----sav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~ 287 (374)
.+.+.|+++.. +.. ..+..+.++.++|.+++|+..--.-+.. -.|+-.-. +.++-.+||+|+
T Consensus 86 ~~~~~g~~~~~~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~--~lGSv~~~-vl~~a~~PVLvV 154 (155)
T 3dlo_A 86 IIRKEGAEGEEHLLVRGKEPPDDIVDFADEVDAIAIVIGIRKRSPTGKL--IFGSVARD-VILKANKPVICI 154 (155)
T ss_dssp HHHHTTCCEEEEEEESSSCHHHHHHHHHHHTTCSEEEEECCEECTTSCE--ECCHHHHH-HHHHCSSCEEEE
T ss_pred HHHhcCCCceEEEEecCCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCE--EeccHHHH-HHHhCCCCEEEe
Confidence 45678988764 322 2333444556999999999875322221 25655444 456778999986
No 46
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=54.12 E-value=75 Score=24.68 Aligned_cols=59 Identities=12% Similarity=0.076 Sum_probs=35.8
Q ss_pred HhhCCCCe--EEEcc----hHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEec
Q 017293 224 LVHDRIPA--TLIAD----SAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAA 288 (374)
Q Consensus 224 L~~~GI~v--tlI~D----sav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a 288 (374)
+.+.|+++ +.+.. ..+..+.++.++|.+++|+. .+| ..+.|+.. .-+.++-++||+|+-
T Consensus 73 ~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~---~~~--~~~lgs~~-~~vl~~~~~pVlvv~ 137 (141)
T 1jmv_A 73 AESVDYPISEKLSGSGDLGQVLSDAIEQYDVDLLVTGHH---QDF--WSKLMSST-RQVMNTIKIDMLVVP 137 (141)
T ss_dssp HHHSSSCCCCEEEEEECHHHHHHHHHHHTTCCEEEEEEC---CCC--HHHHHHHH-HHHHTTCCSEEEEEE
T ss_pred HHHcCCCceEEEEecCCHHHHHHHHHHhcCCCEEEEeCC---Cch--hhhhcchH-HHHHhcCCCCEEEee
Confidence 34568875 23322 23333445578999999987 222 34467443 345667789999973
No 47
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=54.06 E-value=27 Score=28.55 Aligned_cols=61 Identities=8% Similarity=0.066 Sum_probs=36.6
Q ss_pred HhhCCCCeEE---Ecc----hHHHHHHhcCCCCEEEEcceeeecCCCeec-ccccHHHHHHHHhcCCeEEEec
Q 017293 224 LVHDRIPATL---IAD----SAAAALMKDGRVSAVIVGADRVAANGDTAN-KIGTYSLALCAKFHNILFYVAA 288 (374)
Q Consensus 224 L~~~GI~vtl---I~D----sav~~~m~~~~vd~VlvGAd~i~~nG~v~n-kiGT~~lA~~Ak~~~vPvyV~a 288 (374)
+...|+++.. +.. ..+..+.++.++|+|++|+..- |++-. -.|+..--+ .++-++||+|+-
T Consensus 87 ~~~~g~~~~~~~~~~~g~~~~~I~~~a~~~~~DlIV~G~~g~---~~~~~~~~Gsv~~~v-l~~~~~PVlvv~ 155 (170)
T 2dum_A 87 VKRAFRAKNVRTIIRFGIPWDEIVKVAEEENVSLIILPSRGK---LSLSHEFLGSTVMRV-LRKTKKPVLIIK 155 (170)
T ss_dssp HHHHTTCSEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCC---CC--TTCCCHHHHHH-HHHCSSCEEEEC
T ss_pred HHHcCCceeeeeEEecCChHHHHHHHHHHcCCCEEEECCCCC---CccccceechHHHHH-HHhCCCCEEEEc
Confidence 4456888764 222 2333444556999999999863 22322 256554444 556789999983
No 48
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=53.76 E-value=67 Score=25.28 Aligned_cols=43 Identities=12% Similarity=0.230 Sum_probs=26.0
Q ss_pred HHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEec
Q 017293 242 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAA 288 (374)
Q Consensus 242 ~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a 288 (374)
+.++.++|.+++|+..- +|-- --.|+..-.+ .++-.+||+|+=
T Consensus 104 ~a~~~~~dliV~G~~~~--~~~~-~~~Gs~~~~v-l~~~~~pVlvv~ 146 (150)
T 3tnj_A 104 IAEQENVDLIVVGSHGR--HGLA-LLLGSTANSV-LHYAKCDVLAVR 146 (150)
T ss_dssp HHHHTTCSEEEEEEC-----------CCCHHHHH-HHHCSSEEEEEE
T ss_pred HHHHcCCCEEEEecCCC--CCcC-eEecchHHHH-HHhCCCCEEEEe
Confidence 34456999999999864 2222 4467766555 455679999973
No 49
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=53.58 E-value=77 Score=24.63 Aligned_cols=42 Identities=21% Similarity=0.266 Sum_probs=27.8
Q ss_pred HHHhcCCCCEEEEcceeeecCCCeec-ccccHHHHHHHHhcCCeEEEe
Q 017293 241 ALMKDGRVSAVIVGADRVAANGDTAN-KIGTYSLALCAKFHNILFYVA 287 (374)
Q Consensus 241 ~~m~~~~vd~VlvGAd~i~~nG~v~n-kiGT~~lA~~Ak~~~vPvyV~ 287 (374)
.+.++.++|.+++|+.+ +| +-. -.|+-.-. +.++-++||+|+
T Consensus 100 ~~a~~~~~dliV~G~~~---~~-~~~~~~Gs~~~~-v~~~~~~pVlvv 142 (143)
T 3fdx_A 100 ALAKSLPADLVIIASHR---PD-ITTYLLGSNAAA-VVRHAECSVLVV 142 (143)
T ss_dssp HHHHHTTCSEEEEESSC---TT-CCSCSSCHHHHH-HHHHCSSEEEEE
T ss_pred HHHHHhCCCEEEEeCCC---CC-CeeeeeccHHHH-HHHhCCCCEEEe
Confidence 33445689999999984 33 332 24665444 466778999986
No 50
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=52.72 E-value=36 Score=32.05 Aligned_cols=83 Identities=13% Similarity=-0.036 Sum_probs=49.1
Q ss_pred HHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcch--------------------------------
Q 017293 190 LGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADS-------------------------------- 237 (374)
Q Consensus 190 ~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Ds-------------------------------- 237 (374)
+.+.+.+.+.|..++++..+ . . ...+...|+++.-++..
T Consensus 38 l~La~~L~~~Gh~V~v~~~~---~-----~-~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (415)
T 3rsc_A 38 LTVVTELVRRGHRVSYVTAG---G-----F-AEPVRAAGATVVPYQSEIIDADAAEVFGSDDLGVRPHLMYLRENVSVLR 108 (415)
T ss_dssp HHHHHHHHHTTCEEEEEECG---G-----G-HHHHHHTTCEEEECCCSTTTCCHHHHHHSSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEEeCH---H-----H-HHHHHhcCCEEEeccccccccccchhhccccHHHHHHHHHHHHHHHHHH
Confidence 44556667778877766521 1 1 23456778888877631
Q ss_pred HHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccCccc
Q 017293 238 AAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSI 293 (374)
Q Consensus 238 av~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~K~ 293 (374)
.+..++++.+.|.|++ | + .-.+...++|+..|+|++...+.+-+
T Consensus 109 ~l~~~l~~~~PDlVi~--d-----~-----~~~~~~~~aA~~~giP~v~~~~~~~~ 152 (415)
T 3rsc_A 109 ATAEALDGDVPDLVLY--D-----D-----FPFIAGQLLAARWRRPAVRLSAAFAS 152 (415)
T ss_dssp HHHHHHSSSCCSEEEE--E-----S-----TTHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred HHHHHHhccCCCEEEE--C-----c-----hhhhHHHHHHHHhCCCEEEEEecccc
Confidence 1222344567787763 3 1 11223456789999999988755543
No 51
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=52.26 E-value=53 Score=25.44 Aligned_cols=82 Identities=11% Similarity=0.052 Sum_probs=51.2
Q ss_pred eeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHH-HHhc-CCCCEEEEcceeeecCCCeecccccHHHHHHHHh
Q 017293 202 LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAA-LMKD-GRVSAVIVGADRVAANGDTANKIGTYSLALCAKF 279 (374)
Q Consensus 202 ~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~-~m~~-~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~ 279 (374)
..+|.++|..|.... .....|.+.|..+....+..-+. .+.+ ..+|.||+..+ +++| .-|.-.+..+-+.
T Consensus 5 ~~~ilivdd~~~~~~--~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~--l~~~----~~g~~~~~~l~~~ 76 (140)
T 3h5i_A 5 DKKILIVEDSKFQAK--TIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIE--LGEG----MDGVQTALAIQQI 76 (140)
T ss_dssp -CEEEEECSCHHHHH--HHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCSEEEEESS--CSSS----CCHHHHHHHHHHH
T ss_pred CcEEEEEeCCHHHHH--HHHHHHHHcCCEEEEecChHHHHHHHhcCCCCCEEEEecc--CCCC----CCHHHHHHHHHhC
Confidence 457888888776522 23556888899888777654433 3334 57899988654 2332 2344444445455
Q ss_pred cCCeEEEeccCc
Q 017293 280 HNILFYVAAPLT 291 (374)
Q Consensus 280 ~~vPvyV~a~~~ 291 (374)
.++|+++++...
T Consensus 77 ~~~~ii~ls~~~ 88 (140)
T 3h5i_A 77 SELPVVFLTAHT 88 (140)
T ss_dssp CCCCEEEEESSS
T ss_pred CCCCEEEEECCC
Confidence 789999987644
No 52
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=51.66 E-value=1.1e+02 Score=25.72 Aligned_cols=38 Identities=5% Similarity=0.064 Sum_probs=26.2
Q ss_pred CCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccC
Q 017293 246 GRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPL 290 (374)
Q Consensus 246 ~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~ 290 (374)
.+=|.||+ +...|. ..-+..++-.||..|+|++.++..
T Consensus 108 ~~~DvvI~----iS~SG~---t~~~i~~~~~ak~~g~~vI~IT~~ 145 (196)
T 2yva_A 108 HAGDVLLA----ISTRGN---SRDIVKAVEAAVTRDMTIVALTGY 145 (196)
T ss_dssp CTTCEEEE----ECSSSC---CHHHHHHHHHHHHTTCEEEEEECT
T ss_pred CCCCEEEE----EeCCCC---CHHHHHHHHHHHHCCCEEEEEeCC
Confidence 55566653 334563 445667788999999999998753
No 53
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=51.46 E-value=21 Score=30.64 Aligned_cols=51 Identities=12% Similarity=0.052 Sum_probs=34.6
Q ss_pred HHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccC
Q 017293 238 AAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPL 290 (374)
Q Consensus 238 av~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~ 290 (374)
.+..++ .++|.||--|-....+---+|-.|+..+.-+|+..+++-+|...+
T Consensus 56 ~~~~~~--~~~d~vi~~ag~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS 106 (219)
T 3dqp_A 56 EMAKQL--HGMDAIINVSGSGGKSLLKVDLYGAVKLMQAAEKAEVKRFILLST 106 (219)
T ss_dssp HHHTTT--TTCSEEEECCCCTTSSCCCCCCHHHHHHHHHHHHTTCCEEEEECC
T ss_pred HHHHHH--cCCCEEEECCcCCCCCcEeEeHHHHHHHHHHHHHhCCCEEEEECc
Confidence 445556 678888766644332322468899999999999999875654443
No 54
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=51.46 E-value=52 Score=25.27 Aligned_cols=78 Identities=14% Similarity=0.021 Sum_probs=48.0
Q ss_pred CCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHH-HHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHH
Q 017293 200 GVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAA-AALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAK 278 (374)
Q Consensus 200 g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav-~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak 278 (374)
....+|.++|..|.... .....|...|+.|....+..- -..+.+...|.|| +.+. -|--.+..+-+
T Consensus 16 ~~~~~ilivdd~~~~~~--~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi------~~~~-----~g~~~~~~l~~ 82 (137)
T 2pln_A 16 RGSMRVLLIEKNSVLGG--EIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVM------VSDK-----NALSFVSRIKE 82 (137)
T ss_dssp TTCSEEEEECSCHHHHH--HHHHHHHHTTCEEEEESCHHHHHHHHHHSCCSEEE------ECST-----THHHHHHHHHH
T ss_pred CCCCeEEEEeCCHHHHH--HHHHHHHHcCcEEEEeCCHHHHHHHHHcCCCCEEE------EcCc-----cHHHHHHHHHh
Confidence 45678888888776532 235568888998887766432 2334556789888 2322 23333333333
Q ss_pred hc-CCeEEEeccC
Q 017293 279 FH-NILFYVAAPL 290 (374)
Q Consensus 279 ~~-~vPvyV~a~~ 290 (374)
.. ++|+++++..
T Consensus 83 ~~~~~~ii~ls~~ 95 (137)
T 2pln_A 83 KHSSIVVLVSSDN 95 (137)
T ss_dssp HSTTSEEEEEESS
T ss_pred cCCCccEEEEeCC
Confidence 35 8999998764
No 55
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=51.40 E-value=38 Score=31.51 Aligned_cols=82 Identities=16% Similarity=0.022 Sum_probs=49.7
Q ss_pred HHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcch--------------------------------H
Q 017293 191 GVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADS--------------------------------A 238 (374)
Q Consensus 191 ~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Ds--------------------------------a 238 (374)
.+.+.+.+.|..++|+..+ .. ...+...|+++..++.. .
T Consensus 23 ~La~~L~~~GheV~v~~~~--------~~-~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (402)
T 3ia7_A 23 GLVSELARRGHRITYVTTP--------LF-ADEVKAAGAEVVLYKSEFDTFHVPEVVKQEDAETQLHLVYVRENVAILRA 93 (402)
T ss_dssp HHHHHHHHTTCEEEEEECH--------HH-HHHHHHTTCEEEECCCGGGTSSSSSSSCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCEEEEEcCH--------HH-HHHHHHcCCEEEecccccccccccccccccchHHHHHHHHHHHHHHHHHH
Confidence 3446666778877776532 12 33466789988877631 1
Q ss_pred HHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccCccc
Q 017293 239 AAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSI 293 (374)
Q Consensus 239 v~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~K~ 293 (374)
+..++++.+.|.|+. |. ...+...++|+..|+|++...+.+-.
T Consensus 94 l~~~l~~~~pD~Vi~--d~----------~~~~~~~~aA~~~giP~v~~~~~~~~ 136 (402)
T 3ia7_A 94 AEEALGDNPPDLVVY--DV----------FPFIAGRLLAARWDRPAVRLTGGFAA 136 (402)
T ss_dssp HHHHHTTCCCSEEEE--ES----------TTHHHHHHHHHHHTCCEEEEESSCCC
T ss_pred HHHHHhccCCCEEEE--Cc----------hHHHHHHHHHHhhCCCEEEEeccccc
Confidence 223344567887764 21 12233467789999999988755443
No 56
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=50.99 E-value=10 Score=34.94 Aligned_cols=81 Identities=11% Similarity=0.099 Sum_probs=53.3
Q ss_pred EEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHH---HHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHh-
Q 017293 204 RAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA---ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKF- 279 (374)
Q Consensus 204 ~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~---~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~- 279 (374)
+|.++|+..+.+|.......|.+.|++|++++...+. .-+ .+.|.||++ | +.. +.+.-.++..+.++
T Consensus 6 ~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L--~~yDvIIl~-d-~~~-----~~l~~~~~~~L~~yV 76 (259)
T 3rht_A 6 RVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELL--AKQDLVILS-D-YPA-----ERMTAQAIDQLVTMV 76 (259)
T ss_dssp CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHH--HTCSEEEEE-S-CCG-----GGBCHHHHHHHHHHH
T ss_pred eEEEECCCCchhHHHHHHHHHHhCCceEEEecccccccChhHH--hcCCEEEEc-C-Ccc-----ccCCHHHHHHHHHHH
Confidence 5666677777777776666799999999999987662 345 799999886 2 211 23344444444443
Q ss_pred -cCCeEEEeccCccc
Q 017293 280 -HNILFYVAAPLTSI 293 (374)
Q Consensus 280 -~~vPvyV~a~~~K~ 293 (374)
.|-=++++.....|
T Consensus 77 ~~GGgLi~~gG~~s~ 91 (259)
T 3rht_A 77 KAGCGLVMLGGWESY 91 (259)
T ss_dssp HTTCEEEEECSTTSS
T ss_pred HhCCeEEEecCcccc
Confidence 47778877654444
No 57
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=50.61 E-value=32 Score=32.11 Aligned_cols=34 Identities=15% Similarity=0.086 Sum_probs=22.8
Q ss_pred HHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEec
Q 017293 242 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAA 288 (374)
Q Consensus 242 ~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a 288 (374)
++++.+.|.|+. | . -.+..+++|+..|+|++...
T Consensus 109 ~l~~~~PD~Vv~--~-----~------~~~~~~~aa~~~giP~v~~~ 142 (391)
T 3tsa_A 109 LAEAWRPSVLLV--D-----V------CALIGRVLGGLLDLPVVLHR 142 (391)
T ss_dssp HHHHHCCSEEEE--E-----T------TCHHHHHHHHHTTCCEEEEC
T ss_pred HHHhcCCCEEEe--C-----c------chhHHHHHHHHhCCCEEEEe
Confidence 344557887765 2 1 23445678999999998875
No 58
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=49.27 E-value=52 Score=26.09 Aligned_cols=82 Identities=11% Similarity=-0.010 Sum_probs=50.8
Q ss_pred CeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHH-HHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHh
Q 017293 201 VLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKF 279 (374)
Q Consensus 201 ~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~-~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~ 279 (374)
+..+|.++|..|.... .....|.+.|..|....+..-+ ..+++.++|.||+..+ ++++ -|--.+..+-+.
T Consensus 6 ~~~~ILivdd~~~~~~--~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlii~D~~--l~~~-----~g~~~~~~lr~~ 76 (154)
T 3gt7_A 6 RAGEILIVEDSPTQAE--HLKHILEETGYQTEHVRNGREAVRFLSLTRPDLIISDVL--MPEM-----DGYALCRWLKGQ 76 (154)
T ss_dssp -CCEEEEECSCHHHHH--HHHHHHHTTTCEEEEESSHHHHHHHHTTCCCSEEEEESC--CSSS-----CHHHHHHHHHHS
T ss_pred CCCcEEEEeCCHHHHH--HHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCC--CCCC-----CHHHHHHHHHhC
Confidence 4568888888776532 2356688889988877765443 3445677999988764 2222 233333333333
Q ss_pred ---cCCeEEEeccCc
Q 017293 280 ---HNILFYVAAPLT 291 (374)
Q Consensus 280 ---~~vPvyV~a~~~ 291 (374)
.++|+++++...
T Consensus 77 ~~~~~~pii~~s~~~ 91 (154)
T 3gt7_A 77 PDLRTIPVILLTILS 91 (154)
T ss_dssp TTTTTSCEEEEECCC
T ss_pred CCcCCCCEEEEECCC
Confidence 478999987543
No 59
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Probab=49.23 E-value=48 Score=29.79 Aligned_cols=110 Identities=20% Similarity=0.099 Sum_probs=61.5
Q ss_pred HHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCC-----------------c
Q 017293 153 IGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFN-----------------Q 215 (374)
Q Consensus 153 I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~-----------------e 215 (374)
++..+.+.|. +.+|+..+- |. .-..+.+.+...|.. ++.+.+..+.. .
T Consensus 21 ~g~~~q~~l~------~~~VlVvG~-Gg-------~G~~va~~La~~Gv~-~i~lvD~d~v~~sNl~Rq~l~~~~diG~~ 85 (249)
T 1jw9_B 21 FDFDGQEALK------DSRVLIVGL-GG-------LGCAASQYLASAGVG-NLTLLDFDTVSLSNLQRQTLHSDATVGQP 85 (249)
T ss_dssp THHHHHHHHH------HCEEEEECC-SH-------HHHHHHHHHHHHTCS-EEEEECCCBCCGGGGGTCTTCCGGGTTSB
T ss_pred cCHHHHHHHh------CCeEEEEee-CH-------HHHHHHHHHHHcCCC-eEEEEcCCCcccccCCcccccChhhcCcH
Confidence 4555666676 357887764 32 222344455555742 44444444310 1
Q ss_pred chHhHHHHHhhC--CCCeEEEc----chHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEec
Q 017293 216 GSRLTAFELVHD--RIPATLIA----DSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAA 288 (374)
Q Consensus 216 G~~l~a~~L~~~--GI~vtlI~----Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a 288 (374)
-.+.++..|.+. ++.++.+. +..+..++ .++|.||.+.|..- --+.+.-.|+.+++|++.++
T Consensus 86 Ka~~~~~~l~~~np~~~v~~~~~~~~~~~~~~~~--~~~DvVi~~~d~~~---------~~~~l~~~~~~~~~p~i~~~ 153 (249)
T 1jw9_B 86 KVESARDALTRINPHIAITPVNALLDDAELAALI--AEHDLVLDCTDNVA---------VRNQLNAGCFAAKVPLVSGA 153 (249)
T ss_dssp HHHHHHHHHHHHCTTSEEEEECSCCCHHHHHHHH--HTSSEEEECCSSHH---------HHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHHHHCCCcEEEEEeccCCHhHHHHHH--hCCCEEEEeCCCHH---------HHHHHHHHHHHcCCCEEEee
Confidence 112234455543 45665543 33445567 78999988776542 23667778899999998764
No 60
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}
Probab=48.96 E-value=37 Score=31.14 Aligned_cols=115 Identities=11% Similarity=0.073 Sum_probs=62.5
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhh-CCCCeEEE--cc-hHHHHHH
Q 017293 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVH-DRIPATLI--AD-SAAAALM 243 (374)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~-~GI~vtlI--~D-sav~~~m 243 (374)
.+.+||..+-+|.+ | ..+++.+.++|...+|++...++......... .+.. .++.+... .| ..+..++
T Consensus 23 ~~~~vlVtGatG~i-----G--~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~Dl~d~~~~~~~~ 94 (346)
T 4egb_A 23 NAMNILVTGGAGFI-----G--SNFVHYMLQSYETYKIINFDALTYSGNLNNVK-SIQDHPNYYFVKGEIQNGELLEHVI 94 (346)
T ss_dssp -CEEEEEETTTSHH-----H--HHHHHHHHHHCTTEEEEEEECCCTTCCGGGGT-TTTTCTTEEEEECCTTCHHHHHHHH
T ss_pred CCCeEEEECCccHH-----H--HHHHHHHHhhCCCcEEEEEeccccccchhhhh-hhccCCCeEEEEcCCCCHHHHHHHH
Confidence 35677777655533 2 23456666778778888876554322211111 1211 23322111 12 3455666
Q ss_pred hcCCCCEEEEcceeeecCCC--------eecccccHHHHHHHHhcCCeEEEeccC
Q 017293 244 KDGRVSAVIVGADRVAANGD--------TANKIGTYSLALCAKFHNILFYVAAPL 290 (374)
Q Consensus 244 ~~~~vd~VlvGAd~i~~nG~--------v~nkiGT~~lA~~Ak~~~vPvyV~a~~ 290 (374)
+..++|.||--|-....+.. -.|-.||..+.-+|+.++++-+|.+.+
T Consensus 95 ~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS 149 (346)
T 4egb_A 95 KERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIKLVQVST 149 (346)
T ss_dssp HHHTCCEEEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTSEEEEEEE
T ss_pred hhcCCCEEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 43459998876643321110 357889999999999999985544433
No 61
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=48.56 E-value=50 Score=29.40 Aligned_cols=71 Identities=14% Similarity=0.155 Sum_probs=43.4
Q ss_pred ccccHHHHHHHHHHCCC-eeEEEE-ecCCCCCcchHhHHHHHhhCCCCeEEEc-----chHHHHHHhcCCCCEEEEcce-
Q 017293 185 GYGTALGVIRALHSEGV-LERAYC-SETRPFNQGSRLTAFELVHDRIPATLIA-----DSAAAALMKDGRVSAVIVGAD- 256 (374)
Q Consensus 185 g~~tv~~~l~~a~~~g~-~~~V~v-~EsrP~~eG~~l~a~~L~~~GI~vtlI~-----Dsav~~~m~~~~vd~VlvGAd- 256 (374)
|.++.+..|..+.++|. ...|.. .=.+|...|.+ ...+.|||+..++ |..+...+++.++|.+++.+=
T Consensus 17 G~gsnl~all~~~~~~~~~~~I~~Vis~~~~a~~l~----~A~~~gIp~~~~~~~~~~~~~~~~~L~~~~~Dlivlagy~ 92 (215)
T 3kcq_A 17 GRGSNLEALAKAFSTEESSVVISCVISNNAEARGLL----IAQSYGIPTFVVKRKPLDIEHISTVLREHDVDLVCLAGFM 92 (215)
T ss_dssp SCCHHHHHHHHHTCCC-CSEEEEEEEESCTTCTHHH----HHHHTTCCEEECCBTTBCHHHHHHHHHHTTCSEEEESSCC
T ss_pred CCcHHHHHHHHHHHcCCCCcEEEEEEeCCcchHHHH----HHHHcCCCEEEeCcccCChHHHHHHHHHhCCCEEEEeCCc
Confidence 34666655555555543 334332 22467766643 2457899999864 456777788889999887664
Q ss_pred eee
Q 017293 257 RVA 259 (374)
Q Consensus 257 ~i~ 259 (374)
+|+
T Consensus 93 ~IL 95 (215)
T 3kcq_A 93 SIL 95 (215)
T ss_dssp SCC
T ss_pred eEe
Confidence 444
No 62
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=46.16 E-value=42 Score=31.49 Aligned_cols=55 Identities=15% Similarity=0.150 Sum_probs=32.5
Q ss_pred CcEEEEecCCCccccccc-ccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcc
Q 017293 169 KFSVLTHCNTGSLATAGY-GTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIAD 236 (374)
Q Consensus 169 ~~~ILT~~~sg~lat~g~-~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~D 236 (374)
...||..+.++ .|+ ...+.+.+.+.+.|...+|+..+ . + ...+...|+++.-++.
T Consensus 15 ~MrIl~~~~~~----~gh~~~~~~La~~L~~~GheV~v~~~~---~-----~-~~~~~~~G~~~~~~~~ 70 (398)
T 4fzr_A 15 HMRILVIAGCS----EGFVMPLVPLSWALRAAGHEVLVAASE---N-----M-GPTVTGAGLPFAPTCP 70 (398)
T ss_dssp CCEEEEECCSS----HHHHGGGHHHHHHHHHTTCEEEEEEEG---G-----G-HHHHHHTTCCEEEEES
T ss_pred ceEEEEEcCCC----cchHHHHHHHHHHHHHCCCEEEEEcCH---H-----H-HHHHHhCCCeeEecCC
Confidence 36777665431 111 12344556777788888777642 1 2 3356778998888763
No 63
>3k6m_A Succinyl-COA:3-ketoacid-coenzyme A transferase 1, mitochondrial; SCOT, COA transferase, dynamic domain, glycerol, mitochondri transferase; 1.50A {Sus scrofa} PDB: 1m3e_A* 1o9l_A 1ooy_A 2nrc_A 2nrb_A 3oxo_A* 1ooz_A 1ope_A 3dlx_A
Probab=45.64 E-value=68 Score=32.14 Aligned_cols=101 Identities=21% Similarity=0.275 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecC-----CCCCcchHhHHH
Q 017293 148 ATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSET-----RPFNQGSRLTAF 222 (374)
Q Consensus 148 ~a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~Es-----rP~~eG~~l~a~ 222 (374)
..++.|+.+++..|. ||++|-. |.|.-..+...+ ..++. -.+.+|+ .|........ .
T Consensus 261 ~~~~~Ia~raA~el~-----dG~~vnl----------GIGiP~~v~~~~-~~~~~-l~l~~E~G~~g~~p~~~~~~~d-~ 322 (481)
T 3k6m_A 261 NVRERIIKRAALEFE-----DGMYANL----------GIGIPLLASNFI-SPNMT-VHLQSENGILGLGPYPLQNEVD-A 322 (481)
T ss_dssp -CHHHHHHHHGGGCC-----TTEEEEE----------CTTHHHHHGGGC-CTTSC-EEEEETTTEEEECCCCCGGGCC-T
T ss_pred CHHHHHHHHHHHhcC-----CCCEEEE----------ccCHHHHHHhhh-ccCCc-EEEEECCcEeCCccCCCCCccC-c
Confidence 457789999999999 8877654 233111111222 23443 2445564 3432211111 1
Q ss_pred HHhhCCC-CeEE------EcchHHHHHHhcCCCCEEEEcceeeecCCCeec
Q 017293 223 ELVHDRI-PATL------IADSAAAALMKDGRVSAVIVGADRVAANGDTAN 266 (374)
Q Consensus 223 ~L~~~GI-~vtl------I~Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~n 266 (374)
.+...|- .+++ +.....+.+++.+++|..++||=-|-.+|.+.|
T Consensus 323 ~~in~Gk~~~t~~~g~~~~~~~~~F~~~~gG~~Dv~ilga~qVD~~Gnvn~ 373 (481)
T 3k6m_A 323 DLINAGKETVTVLPGASYFSSDESFAMIRGGHVNLTMLGAMQVSKYGDLAN 373 (481)
T ss_dssp TCBCTTSBBCCEEEEEEECCHHHHHHHHHTTCCSEEEECCSEEETTCCEEC
T ss_pred ccccCCCceEeccccceecCCHHHeeeecCCCeEEEEechHhccCCCCccc
Confidence 2334452 2332 333445556778899999999999999998854
No 64
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=45.46 E-value=56 Score=25.27 Aligned_cols=80 Identities=9% Similarity=-0.053 Sum_probs=47.9
Q ss_pred eeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHH-HHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhc
Q 017293 202 LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFH 280 (374)
Q Consensus 202 ~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~-~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~ 280 (374)
..+|.++|..|.... .....|...|+.+....+..-+ ..+.+.+.|.|++..+ +++. -|--.+..+-+..
T Consensus 4 ~~~Ilivdd~~~~~~--~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~--l~~~-----~g~~l~~~l~~~~ 74 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQ--KLKGFLEEKGISIDLAYNCEEAIGKIFSNKYDLIFLEII--LSDG-----DGWTLCKKIRNVT 74 (136)
T ss_dssp CCEEEEECSCHHHHH--HHHHHHHTTTCEEEEESSHHHHHHHHHHCCCSEEEEESE--ETTE-----EHHHHHHHHHTTC
T ss_pred CCeEEEEcCCHHHHH--HHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCEEEEeCC--CCCC-----CHHHHHHHHccCC
Confidence 457888887775422 2345677788888776654332 2344567899988654 3321 2333333343344
Q ss_pred CCeEEEeccC
Q 017293 281 NILFYVAAPL 290 (374)
Q Consensus 281 ~vPvyV~a~~ 290 (374)
.+|+++++..
T Consensus 75 ~~~ii~ls~~ 84 (136)
T 2qzj_A 75 TCPIVYMTYI 84 (136)
T ss_dssp CCCEEEEESC
T ss_pred CCCEEEEEcC
Confidence 8999988654
No 65
>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis}
Probab=45.42 E-value=2.2e+02 Score=27.92 Aligned_cols=150 Identities=13% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhC
Q 017293 148 ATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHD 227 (374)
Q Consensus 148 ~a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~ 227 (374)
...++|+++++++|. ||.++=+ |.|.+=..+.......+++.++ -|+..-.-..|.+.
T Consensus 197 ~~~~~Ia~~~a~~i~-----dG~~lq~----------GiG~ip~AV~~~L~~~~~lgi~-------tE~~~d~~~~lie~ 254 (434)
T 3eh7_A 197 EVEEAIGRNCAELIE-----DGATLQL----------GIGAIPDAALLFLKDKKDLGIH-------TEMFSDGVVELVRS 254 (434)
T ss_dssp HHHHHHHHHHHHTCC-----TTCEEEC----------CSSHHHHHHHHTTTTCCSBEEE-------CSEECHHHHHHHHT
T ss_pred hHHHHHHHHHHHhcc-----CCCEEEe----------ccchHHHHHHHHhhhcCCceEE-------ccCcchhHHHHHHC
Q ss_pred CC------------CeEEEcchHH----------------------HHHHhcCCCC--EEEEcceeeecCCCeeccc---
Q 017293 228 RI------------PATLIADSAA----------------------AALMKDGRVS--AVIVGADRVAANGDTANKI--- 268 (374)
Q Consensus 228 GI------------~vtlI~Dsav----------------------~~~m~~~~vd--~VlvGAd~i~~nG~v~nki--- 268 (374)
|. +++-....+. .+.. .+.| ..|.||=-|-.+|.+.+-.
T Consensus 255 G~i~~~~k~~~~g~~~~~f~~G~~~~y~~~~~np~~~~~~~~~~n~p~~i--~~~d~~i~in~a~evD~~G~vn~~~~g~ 332 (434)
T 3eh7_A 255 GVITGKKKTLHPGKMVATFLMGSEDVYHFIDKNPDVELYPVDYVNDPRVI--AQNDNMVSINSCIEIDLMGQVVSECIGS 332 (434)
T ss_dssp TSBCCTTCSSSTTCEEESEECCCHHHHHHHTTCTTEEECCHHHHTCHHHH--TTSSSEEEEECCSEEETTCCEECCSTTS
T ss_pred CCccceeecccCCceeEeecchHHHHHHHHHhCCCeEEeccccccCHHHH--cCCCCcEEEehhheeccCCCeeeeccCC
Q ss_pred -------ccHHHHHHHHhc--CCeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCccccCCCceeecceeee-
Q 017293 269 -------GTYSLALCAKFH--NILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDV- 338 (374)
Q Consensus 269 -------GT~~lA~~Ak~~--~vPvyV~a~~~K~~~~~~~~~~i~ie~r~~~ev~~~~~~~~~~~~~~~~~v~np~fD~- 338 (374)
|....+.-|+.- |+++++.-.+.| ...+.-+-|.++.
T Consensus 333 ~~~~G~GG~~Df~~ga~~s~ggk~ii~~~st~~---------------------------------~G~is~iv~~~~~g 379 (434)
T 3eh7_A 333 KQFSGTGGQVDYVRGAAWSKNGKSIMAIPSTAK---------------------------------NGTASRIVPIIAEG 379 (434)
T ss_dssp CCSBCCCTHHHHHHHHHHSTTCEEEEECCSEET---------------------------------TTTEESEESSCCTT
T ss_pred eeecccCchHHHhccccccCCCceEEEEeeecC---------------------------------CCCCCeEeeCCCCC
Q ss_pred ----cCCCCccEEEeCCCCcc
Q 017293 339 ----TPANLITGIITEKQGVV 355 (374)
Q Consensus 339 ----tP~~lIt~iITE~~Gi~ 355 (374)
||.+.++.||||. |++
T Consensus 380 ~~v~~~~~~v~~vVTE~-Gva 399 (434)
T 3eh7_A 380 AAVTTLRNEVDYVVTEY-GIA 399 (434)
T ss_dssp CCEEECTTTCCEEEETT-EEE
T ss_pred CCceeCccceeEEEccc-EEE
No 66
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=44.82 E-value=1.5e+02 Score=25.41 Aligned_cols=37 Identities=14% Similarity=0.091 Sum_probs=25.8
Q ss_pred CCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEecc
Q 017293 246 GRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAP 289 (374)
Q Consensus 246 ~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~ 289 (374)
.+=|.||+ |...|. .--+..++-.||..|+|+++++.
T Consensus 113 ~~~Dvvi~----iS~SG~---t~~~~~~~~~ak~~g~~vi~iT~ 149 (201)
T 3trj_A 113 NEDDILLV----ITTSGD---SENILSAVEEAHDLEMKVIALTG 149 (201)
T ss_dssp CTTCEEEE----ECSSSC---CHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCEEEE----EeCCCC---CHHHHHHHHHHHHCCCcEEEEEC
Confidence 55566654 444663 33366677899999999999865
No 67
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=44.59 E-value=72 Score=23.71 Aligned_cols=79 Identities=13% Similarity=0.173 Sum_probs=46.4
Q ss_pred eEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHH-HHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcC
Q 017293 203 ERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHN 281 (374)
Q Consensus 203 ~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~-~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~ 281 (374)
.+|.+.|..|.... .+ ...|...|..+....+..-+ ..+.+...|.|++..+ +++. -|--.+..+-+...
T Consensus 3 ~~ilivdd~~~~~~-~l-~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~--l~~~-----~g~~~~~~l~~~~~ 73 (122)
T 1zgz_A 3 HHIVIVEDEPVTQA-RL-QSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDIN--LPDE-----NGLMLTRALRERST 73 (122)
T ss_dssp CEEEEECSSHHHHH-HH-HHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSS-----CHHHHHHHHHTTCC
T ss_pred cEEEEEECCHHHHH-HH-HHHHHHCCCeEEEecCHHHHHHHHhcCCCCEEEEeCC--CCCC-----ChHHHHHHHHhcCC
Confidence 36777777765422 22 44577788888776654332 2344567899988553 3332 23333333444557
Q ss_pred CeEEEeccC
Q 017293 282 ILFYVAAPL 290 (374)
Q Consensus 282 vPvyV~a~~ 290 (374)
+|+++++..
T Consensus 74 ~~ii~~s~~ 82 (122)
T 1zgz_A 74 VGIILVTGR 82 (122)
T ss_dssp CEEEEEESS
T ss_pred CCEEEEECC
Confidence 899888654
No 68
>3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.80A {Porphyromonas gingivalis}
Probab=44.12 E-value=2.4e+02 Score=27.55 Aligned_cols=156 Identities=17% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEE----------------------
Q 017293 148 ATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERA---------------------- 205 (374)
Q Consensus 148 ~a~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V---------------------- 205 (374)
...+.|+++++++|. ||.++-. |.|.+=..+-......+.+.+
T Consensus 194 ~~~~~Ia~~~a~~i~-----dg~~lql----------GiG~ip~av~~~l~~~~~l~i~te~~~~~~~~l~~~G~~~~~~ 258 (439)
T 3d3u_A 194 DLELRIGQNCASLIK-----DGDTLQL----------GIGGIPDAVLRALEGHKDLGIHTEMFTDGVMRMIRKGIINGKK 258 (439)
T ss_dssp HHHHHHHHHHHTTCC-----TTCEEEE----------CSSHHHHHHHHTTTTCCSBEEECSCBCHHHHHHHHHTCBCCSS
T ss_pred hHHHHHHHHHHHhcC-----CCCEEEe----------ccchHHHHHHHHHhhCCCceEEEEEecchhHhhccCCcccccc
Q ss_pred -------EEecCCCCCcchHhHHHHHhhCCCCeEEEcchHH--HHHHhcCCCCEEEEcceeeecCCCeecc-cccHH---
Q 017293 206 -------YCSETRPFNQGSRLTAFELVHDRIPATLIADSAA--AALMKDGRVSAVIVGADRVAANGDTANK-IGTYS--- 272 (374)
Q Consensus 206 -------~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav--~~~m~~~~vd~VlvGAd~i~~nG~v~nk-iGT~~--- 272 (374)
.+.--.+ |.+- .+......=.+.+++-.-+ .+.+++..-|..++||=-|-.+|.+.+- +|+..
T Consensus 259 ~~~~~g~~~~~~~~---g~~~-~y~~~~~~~~~~~~~~~~~n~p~~i~~~~~dv~i~ga~evD~~G~vn~~~~g~~~~~G 334 (439)
T 3d3u_A 259 KTLHPEKVVTSLIF---GSKE-LYDFVNNNPVIECYPVDYINNPDVIGKNDRMVSINSCLEMDLMGQAASESIGYEQFSG 334 (439)
T ss_dssp CSSSTTSEEESBBC---CCHH-HHHHHTTCTTEEECBHHHHTCHHHHHHSSSEEEEECCSCEETTSCC------------
T ss_pred cccCCCceeEEEcc---CchH-HHHHhcCCCCEEEEeccccCCHHHhhccCCcEEEehheEecCCCCEeeeccCCeeecc
Q ss_pred -------HHHHHHhcCCeEEEeccCc-------cccCCCCCCCccccccCCcccceeccCCCCccccCCCceeecceeee
Q 017293 273 -------LALCAKFHNILFYVAAPLT-------SIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDV 338 (374)
Q Consensus 273 -------lA~~Ak~~~vPvyV~a~~~-------K~~~~~~~~~~i~ie~r~~~ev~~~~~~~~~~~~~~~~~v~np~fD~ 338 (374)
++-+....+--+++++++. ||.+....|. +=.
T Consensus 335 ~GG~~D~~~~A~~s~~gk~ii~~~~t~k~G~~s~iv~~~~~g~----------------------------------~v~ 380 (439)
T 3d3u_A 335 SGGQVDFLRGAKRSKGGISIMAFPSTAKKGTESRIVPILKEGA----------------------------------CVT 380 (439)
T ss_dssp --CHHHHHHHHTTSTTCEEEEECCSEETTTTEESEESSCC----------------------------------------
T ss_pred cccHHHHhhcccccCCCeEEEEEeeecCCCCCCeEeECccCCC----------------------------------Cce
Q ss_pred cCCCCccEEEeCCCCcccC
Q 017293 339 TPANLITGIITEKQGVVTK 357 (374)
Q Consensus 339 tP~~lIt~iITE~~Gi~~p 357 (374)
||-+.++.||||. |++.+
T Consensus 381 ~~~~~v~~vVTE~-gva~l 398 (439)
T 3d3u_A 381 TGRNEVDYVVTEY-GVARL 398 (439)
T ss_dssp CCSTTCSEEEETT-EEEEC
T ss_pred eCCCcceEEECCC-EEEEe
No 69
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=44.01 E-value=63 Score=28.51 Aligned_cols=70 Identities=14% Similarity=0.092 Sum_probs=41.6
Q ss_pred ccccHHHHHHHHHHCCC-eeEE--EEecCCCCCcchHhHHHHHhhCCCCeEEEc----------chHHHHHHhcCCCCEE
Q 017293 185 GYGTALGVIRALHSEGV-LERA--YCSETRPFNQGSRLTAFELVHDRIPATLIA----------DSAAAALMKDGRVSAV 251 (374)
Q Consensus 185 g~~tv~~~l~~a~~~g~-~~~V--~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~----------Dsav~~~m~~~~vd~V 251 (374)
|.|+.+..|..+.++|. ...| +++ .+|...|.+ ...+.|||+..+. |..+-..++..++|.+
T Consensus 9 g~gsnl~ali~~~~~~~~~~~i~~Vis-~~~~~~~~~----~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dli 83 (212)
T 1jkx_A 9 GNGSNLQAIIDACKTNKIKGTVRAVFS-NKADAFGLE----RARQAGIATHTLIASAFDSREAYDRELIHEIDMYAPDVV 83 (212)
T ss_dssp SCCHHHHHHHHHHHTTSSSSEEEEEEE-SCTTCHHHH----HHHHTTCEEEECCGGGCSSHHHHHHHHHHHHGGGCCSEE
T ss_pred CCcHHHHHHHHHHHcCCCCceEEEEEe-CCCchHHHH----HHHHcCCcEEEeCcccccchhhccHHHHHHHHhcCCCEE
Confidence 34555555545555553 2333 333 345554533 2457899999875 3556667777899999
Q ss_pred EEcce-eee
Q 017293 252 IVGAD-RVA 259 (374)
Q Consensus 252 lvGAd-~i~ 259 (374)
++.+= +|+
T Consensus 84 v~agy~~il 92 (212)
T 1jkx_A 84 VLAGFMRIL 92 (212)
T ss_dssp EESSCCSCC
T ss_pred EEeChhhhC
Confidence 88654 444
No 70
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=43.03 E-value=69 Score=24.79 Aligned_cols=59 Identities=7% Similarity=0.020 Sum_probs=34.5
Q ss_pred HHhhCCCCeEEEc--c---hHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEe
Q 017293 223 ELVHDRIPATLIA--D---SAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (374)
Q Consensus 223 ~L~~~GI~vtlI~--D---sav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~ 287 (374)
.+.+.|+++.... . ..+..+. .++|.+++|+..- |.+-...|+..-.+ .++-.+||+|+
T Consensus 74 ~~~~~g~~~~~~v~~g~~~~~I~~~a--~~~dliV~G~~~~---~~~~~~~Gs~~~~v-l~~~~~pVlvv 137 (138)
T 3idf_A 74 FFTEKGINPFVVIKEGEPVEMVLEEA--KDYNLLIIGSSEN---SFLNKIFASHQDDF-IQKAPIPVLIV 137 (138)
T ss_dssp HHHTTTCCCEEEEEESCHHHHHHHHH--TTCSEEEEECCTT---STTSSCCCCTTCHH-HHHCSSCEEEE
T ss_pred HHHHCCCCeEEEEecCChHHHHHHHH--hcCCEEEEeCCCc---chHHHHhCcHHHHH-HhcCCCCEEEe
Confidence 3556788865432 2 2233333 3999999999753 22222226554444 45667999986
No 71
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=42.71 E-value=34 Score=32.61 Aligned_cols=16 Identities=13% Similarity=-0.050 Sum_probs=13.0
Q ss_pred HHHHHhcCCeEEEecc
Q 017293 274 ALCAKFHNILFYVAAP 289 (374)
Q Consensus 274 A~~Ak~~~vPvyV~a~ 289 (374)
+++|+..|+|++.+..
T Consensus 109 ~~~A~~lgiP~v~~~~ 124 (404)
T 3h4t_A 109 RSMAEKLGIPYRYTVL 124 (404)
T ss_dssp HHHHHHHTCCEEEEES
T ss_pred hhHHhhcCCCEEEEEc
Confidence 6789999999986653
No 72
>3rrl_A Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori}
Probab=42.63 E-value=58 Score=29.38 Aligned_cols=99 Identities=12% Similarity=0.035 Sum_probs=58.7
Q ss_pred HHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCC-CeeEEEEecCCC---------------------C
Q 017293 156 YGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEG-VLERAYCSETRP---------------------F 213 (374)
Q Consensus 156 ~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g-~~~~V~v~EsrP---------------------~ 213 (374)
.++++|+ ||++|...++.+ .++...+++...+++ ++++++-.-+-+ .
T Consensus 13 eAv~~Ik-----dG~tV~~gGf~~------~g~P~~li~aL~~~~~kdLtli~~~~g~~~~g~~~L~~~G~v~r~i~s~~ 81 (235)
T 3rrl_A 13 KALSALK-----DGDTILVGGFGL------CGIPEYAIDYIYKKGIKDLIVVSNNCGVDDFGLGILLEKKQIKKIIASYV 81 (235)
T ss_dssp HHHTTCC-----TTCEEEECCBTT------BTCCHHHHHHHHHHTCCSEEEECSCCCCSSSGGGGGGTTTCEEEEEESCC
T ss_pred HHHhhCC-----CCCEEEECCcCc------cCCHHHHHHHHHhcCCCcEEEEEcCCCCCCcCHHHHHhCCCeeEEEeccc
Confidence 3455677 999999987542 244455555554444 467777542211 1
Q ss_pred CcchHhHHHHHhhCCCCeEEEcchHHHHHHhcC-------------------------------------CCCEEEEcce
Q 017293 214 NQGSRLTAFELVHDRIPATLIADSAAAALMKDG-------------------------------------RVSAVIVGAD 256 (374)
Q Consensus 214 ~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~-------------------------------------~vd~VlvGAd 256 (374)
....+ +.+...+-.|++..+|-+.++..++.. ++|..|+.|.
T Consensus 82 g~~~~-~~~~~~~G~ie~~~~pqg~la~~~rag~~G~P~~~t~~glgT~v~~gk~~~~~~G~~~l~~~a~~~DvAli~a~ 160 (235)
T 3rrl_A 82 GENKI-FESQMLNGEIEVVLTPQGTLAENLHAGGAGIPAYYTPTGVGTLIAQGKESREFNGKEYILERAITGDYGLIKAY 160 (235)
T ss_dssp CSCHH-HHHHHHHTSSEEEECCHHHHHHHHHHHHHTCCEEEESTTTTSGGGTTCCEEEETTEEEEEEECCCEEEEEEECS
T ss_pred cCCHH-HHHHHHcCCeEEEECCHHHHHHHHHHHhCCCCEEEeccccCcccccCceEEeeCCEEEEEEcCCCCeEEEEEee
Confidence 11111 122222233666666666655555432 8899999999
Q ss_pred eeecCCCeec
Q 017293 257 RVAANGDTAN 266 (374)
Q Consensus 257 ~i~~nG~v~n 266 (374)
..-.+|.+.-
T Consensus 161 ~aD~~GN~~~ 170 (235)
T 3rrl_A 161 KSDTLGNLVF 170 (235)
T ss_dssp EEETTCCEEC
T ss_pred ecCCCceEEE
Confidence 9999998753
No 73
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=42.53 E-value=77 Score=23.90 Aligned_cols=82 Identities=15% Similarity=0.005 Sum_probs=48.7
Q ss_pred CeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHH-HHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHH-
Q 017293 201 VLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAK- 278 (374)
Q Consensus 201 ~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~-~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak- 278 (374)
...+|.++|..|.... .....|.+.|..+....+..-+ ..+++.+.|.||+..+- ++ .-|--.+..+-+
T Consensus 6 ~~~~ilivdd~~~~~~--~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l--~~-----~~g~~~~~~l~~~ 76 (130)
T 3eod_A 6 VGKQILIVEDEQVFRS--LLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAM--PR-----MNGLKLLEHIRNR 76 (130)
T ss_dssp TTCEEEEECSCHHHHH--HHHHHHHHTTCEEEEESCHHHHHHHHTTCCCSEEEECCC------------CHHHHHHHHHT
T ss_pred CCCeEEEEeCCHHHHH--HHHHHHHhCCceEEEeCCHHHHHHHHhcCCCCEEEEecCC--CC-----CCHHHHHHHHHhc
Confidence 3457888887765522 2355688889988877665433 34456779999987653 22 123333333333
Q ss_pred hcCCeEEEeccCc
Q 017293 279 FHNILFYVAAPLT 291 (374)
Q Consensus 279 ~~~vPvyV~a~~~ 291 (374)
..++|+++++...
T Consensus 77 ~~~~~ii~~t~~~ 89 (130)
T 3eod_A 77 GDQTPVLVISATE 89 (130)
T ss_dssp TCCCCEEEEECCC
T ss_pred CCCCCEEEEEcCC
Confidence 3479999986643
No 74
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=42.30 E-value=56 Score=25.76 Aligned_cols=82 Identities=13% Similarity=-0.062 Sum_probs=50.0
Q ss_pred CeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHH-HHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHh
Q 017293 201 VLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKF 279 (374)
Q Consensus 201 ~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~-~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~ 279 (374)
+..+|.++|..|.... .....|...|+.|....+..-+ ..+++..+|.||+..+- ++ .-|--.+..+.+.
T Consensus 6 ~~~~iLivdd~~~~~~--~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l--~~-----~~g~~~~~~l~~~ 76 (154)
T 2rjn_A 6 KNYTVMLVDDEQPILN--SLKRLIKRLGCNIITFTSPLDALEALKGTSVQLVISDMRM--PE-----MGGEVFLEQVAKS 76 (154)
T ss_dssp SCCEEEEECSCHHHHH--HHHHHHHTTTCEEEEESCHHHHHHHHTTSCCSEEEEESSC--SS-----SCHHHHHHHHHHH
T ss_pred CCCeEEEEcCCHHHHH--HHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEecCC--CC-----CCHHHHHHHHHHh
Confidence 4567888888775532 2355688889988876664332 33455678999887642 22 1233333334333
Q ss_pred -cCCeEEEeccCc
Q 017293 280 -HNILFYVAAPLT 291 (374)
Q Consensus 280 -~~vPvyV~a~~~ 291 (374)
.++|+++++...
T Consensus 77 ~~~~~ii~ls~~~ 89 (154)
T 2rjn_A 77 YPDIERVVISGYA 89 (154)
T ss_dssp CTTSEEEEEECGG
T ss_pred CCCCcEEEEecCC
Confidence 479999987644
No 75
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=41.74 E-value=67 Score=23.67 Aligned_cols=78 Identities=6% Similarity=0.023 Sum_probs=46.1
Q ss_pred EEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHH-HHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCC
Q 017293 204 RAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNI 282 (374)
Q Consensus 204 ~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~-~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~v 282 (374)
+|.++|..|.... .....|...|..+....+..-+ ..+.+...|.|++..+- +++ -|--.+..+-+..++
T Consensus 3 ~ilivdd~~~~~~--~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l--~~~-----~g~~~~~~l~~~~~~ 73 (120)
T 2a9o_A 3 KILIVDDEKPISD--IIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLML--PEI-----DGLEVAKTIRKTSSV 73 (120)
T ss_dssp EEEEECSCHHHHH--HHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEECSSC--SSS-----CHHHHHHHHHHHCCC
T ss_pred eEEEEcCCHHHHH--HHHHHHHhcCcEEEEecCHHHHHHHHHhCCCCEEEEeccC--CCC-----CHHHHHHHHHhCCCC
Confidence 5777777665421 2245677788888776654332 23345678999886542 322 233333344445789
Q ss_pred eEEEeccC
Q 017293 283 LFYVAAPL 290 (374)
Q Consensus 283 PvyV~a~~ 290 (374)
|+++++..
T Consensus 74 ~ii~~s~~ 81 (120)
T 2a9o_A 74 PILMLSAK 81 (120)
T ss_dssp CEEEEESC
T ss_pred CEEEEecC
Confidence 99988654
No 76
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=41.43 E-value=95 Score=23.87 Aligned_cols=81 Identities=7% Similarity=-0.078 Sum_probs=49.1
Q ss_pred eeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHH-HHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHH--
Q 017293 202 LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAA-LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAK-- 278 (374)
Q Consensus 202 ~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~-~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak-- 278 (374)
..+|.++|..|.... .....|.+.|..|....+..-+. .+.+..+|.||+..+ ++++ -|.-.+..+-+
T Consensus 4 ~~~iLivdd~~~~~~--~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--lp~~-----~g~~~~~~lr~~~ 74 (136)
T 3t6k_A 4 PHTLLIVDDDDTVAE--MLELVLRGAGYEVRRAASGEEALQQIYKNLPDALICDVL--LPGI-----DGYTLCKRVRQHP 74 (136)
T ss_dssp CCEEEEECSCHHHHH--HHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSS-----CHHHHHHHHHHSG
T ss_pred CCEEEEEeCCHHHHH--HHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCC--CCCC-----CHHHHHHHHHcCC
Confidence 457888887776422 23556788898888776654432 345578999988543 3332 24333333333
Q ss_pred -hcCCeEEEeccCc
Q 017293 279 -FHNILFYVAAPLT 291 (374)
Q Consensus 279 -~~~vPvyV~a~~~ 291 (374)
..++|+++++...
T Consensus 75 ~~~~~pii~~t~~~ 88 (136)
T 3t6k_A 75 LTKTLPILMLTAQG 88 (136)
T ss_dssp GGTTCCEEEEECTT
T ss_pred CcCCccEEEEecCC
Confidence 2378999987643
No 77
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=40.94 E-value=61 Score=24.98 Aligned_cols=80 Identities=6% Similarity=-0.006 Sum_probs=47.8
Q ss_pred eeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHH-HHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHh-
Q 017293 202 LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAA-AALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKF- 279 (374)
Q Consensus 202 ~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav-~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~- 279 (374)
..+|.++|..|.... .....|.+.|+.|....+..- -..+++...|.||+.. +.+. -|.-.+..+-+.
T Consensus 4 ~~~iLivdd~~~~~~--~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~---~~~~-----~g~~~~~~l~~~~ 73 (142)
T 2qxy_A 4 TPTVMVVDESRITFL--AVKNALEKDGFNVIWAKNEQEAFTFLRREKIDLVFVDV---FEGE-----ESLNLIRRIREEF 73 (142)
T ss_dssp CCEEEEECSCHHHHH--HHHHHHGGGTCEEEEESSHHHHHHHHTTSCCSEEEEEC---TTTH-----HHHHHHHHHHHHC
T ss_pred CCeEEEEeCCHHHHH--HHHHHHHhCCCEEEEECCHHHHHHHHhccCCCEEEEeC---CCCC-----cHHHHHHHHHHHC
Confidence 457778887765422 235567888998886665433 2344556789998875 3321 233333333333
Q ss_pred cCCeEEEeccCc
Q 017293 280 HNILFYVAAPLT 291 (374)
Q Consensus 280 ~~vPvyV~a~~~ 291 (374)
.++|+++++...
T Consensus 74 ~~~pii~ls~~~ 85 (142)
T 2qxy_A 74 PDTKVAVLSAYV 85 (142)
T ss_dssp TTCEEEEEESCC
T ss_pred CCCCEEEEECCC
Confidence 469999987653
No 78
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=40.93 E-value=1.1e+02 Score=28.87 Aligned_cols=84 Identities=7% Similarity=-0.042 Sum_probs=43.8
Q ss_pred HCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcch---------HHHHHHhcCCCCEEEEcceeeecCCCeeccc
Q 017293 198 SEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADS---------AAAALMKDGRVSAVIVGADRVAANGDTANKI 268 (374)
Q Consensus 198 ~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Ds---------av~~~m~~~~vd~VlvGAd~i~~nG~v~nki 268 (374)
+.|...+|++. .|.+.+... .+...|.++..++-. .+-..+++.++..|++. .---+.|.+...-
T Consensus 129 ~~gd~~~Vl~~--~p~~~~~~~---~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~l~-~p~nptG~~~~~~ 202 (437)
T 3g0t_A 129 HKNREYGTLFI--DPGFNLNKL---QCRILGQKFESFDLFEYRGEKLREKLESYLQTGQFCSIIYS-NPNNPTWQCMTDE 202 (437)
T ss_dssp CTTCSCCEEEE--ESCCHHHHH---HHHHHTCCCEEEEGGGGCTTHHHHHHHHHHTTTCCCEEEEE-SSCTTTCCCCCHH
T ss_pred CCCCccEEEEe--CCCcHhHHH---HHHHcCCEEEEEeecCCCCccCHHHHHHHHhcCCceEEEEe-CCCCCCCCcCCHH
Confidence 44442256655 466766432 244568877777521 22333434677777551 1111223222222
Q ss_pred ccHHHHHHHHhcCCeEEEe
Q 017293 269 GTYSLALCAKFHNILFYVA 287 (374)
Q Consensus 269 GT~~lA~~Ak~~~vPvyV~ 287 (374)
--..++-+|++||+++++=
T Consensus 203 ~l~~i~~~a~~~~~~li~D 221 (437)
T 3g0t_A 203 ELRIIGELATKHDVIVIED 221 (437)
T ss_dssp HHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHCCcEEEEE
Confidence 2233667899999998873
No 79
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=40.34 E-value=1e+02 Score=22.85 Aligned_cols=79 Identities=9% Similarity=0.017 Sum_probs=46.4
Q ss_pred eEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHH-HHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcC
Q 017293 203 ERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHN 281 (374)
Q Consensus 203 ~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~-~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~ 281 (374)
.+|.++|..|.... .....|...|..+....+..-+ ..+.+.+.|.|++..+- ++. -|--.+..+-+..+
T Consensus 4 ~~ilivdd~~~~~~--~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l--~~~-----~g~~~~~~l~~~~~ 74 (123)
T 1xhf_A 4 PHILIVEDELVTRN--TLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINL--PGK-----NGLLLARELREQAN 74 (123)
T ss_dssp CEEEEECSCHHHHH--HHHHHHHTTTCEEEEESSHHHHHHHHHHSCCSEEEECSSC--SSS-----CHHHHHHHHHHHCC
T ss_pred ceEEEEeCCHHHHH--HHHHHHhhCCcEEEEeCCHHHHHHHHhcCCCCEEEEcCCC--CCC-----CHHHHHHHHHhCCC
Confidence 36777887765421 2244577788887766654332 23445678999886542 322 23333334434468
Q ss_pred CeEEEeccC
Q 017293 282 ILFYVAAPL 290 (374)
Q Consensus 282 vPvyV~a~~ 290 (374)
+|+++++..
T Consensus 75 ~~ii~~s~~ 83 (123)
T 1xhf_A 75 VALMFLTGR 83 (123)
T ss_dssp CEEEEEESC
T ss_pred CcEEEEECC
Confidence 999987653
No 80
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=39.44 E-value=54 Score=28.30 Aligned_cols=48 Identities=21% Similarity=0.068 Sum_probs=32.8
Q ss_pred ccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcc
Q 017293 187 GTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIAD 236 (374)
Q Consensus 187 ~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~D 236 (374)
..+...|..|.+.|.+++|++........+.. ...|.+.||++.....
T Consensus 72 ~~i~~aL~~aa~rGV~Vrii~D~~~~~~~~~~--~~~l~~~gi~v~~~~~ 119 (196)
T 4ggj_A 72 PQLGRAVQLLHQRGVRVRVITDCDYMALNGSQ--IGLLRKAGIQVRHDQD 119 (196)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESSCCC---CCH--HHHHHHTTCEEEECCS
T ss_pred HHHHHHHHHHHHcCCcEEEEEecccccccHHH--HHHHHhcCCCcccccc
Confidence 34667788888899999999865444444443 3568999999876544
No 81
>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA) sandwich, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125}
Probab=39.37 E-value=1.8e+02 Score=25.41 Aligned_cols=31 Identities=13% Similarity=0.036 Sum_probs=24.3
Q ss_pred HHHHhhCCCCeEEEcchHHH-----------HHHhcCCCCEEEE
Q 017293 221 AFELVHDRIPATLIADSAAA-----------ALMKDGRVSAVIV 253 (374)
Q Consensus 221 a~~L~~~GI~vtlI~Dsav~-----------~~m~~~~vd~Vlv 253 (374)
++.+++.|+++..|++..-. .+- ..+|.+|.
T Consensus 128 ~~~Ak~~G~~vI~IT~~~~s~~~~~~~~~g~~La--~~aD~~l~ 169 (243)
T 3cvj_A 128 AIESRNIGAKVIAMTSMKHSQKVTSRHKSGKKLY--EYADVVLD 169 (243)
T ss_dssp HHHHHHHTCEEEEEECHHHHHHSCCCSTTSCCGG--GGCSEEEE
T ss_pred HHHHHHCCCEEEEEeCCcccccccccCCCcCcHH--HhCCEEEE
Confidence 56678899999999998655 454 67888875
No 82
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=39.32 E-value=2.3e+02 Score=26.04 Aligned_cols=87 Identities=10% Similarity=0.020 Sum_probs=47.9
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcc--------hHHHHHHhcCCCCEEEEcceeeecCCC
Q 017293 192 VIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIAD--------SAAAALMKDGRVSAVIVGADRVAANGD 263 (374)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~D--------sav~~~m~~~~vd~VlvGAd~i~~nG~ 263 (374)
+++.+.+.| -+|++.+ |.+.|..+ ...+...|+++..++- ..+-..+.+.++..|++-. -=.+.|.
T Consensus 78 ~~~~l~~~g--d~Vl~~~--~~~~~~~~-~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~-~~nptG~ 151 (416)
T 3isl_A 78 VLASVIEPE--DDVLIPI--YGRFGYLL-TEIAERYGANVHMLECEWGTVFDPEDIIREIKKVKPKIVAMVH-GETSTGR 151 (416)
T ss_dssp HHHHHCCTT--CEEEEEE--SSHHHHHH-HHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEES-EETTTTE
T ss_pred HHHHhcCCC--CEEEEec--CCcccHHH-HHHHHhcCCeeEEEecCCCCCCCHHHHHHHHhhCCCcEEEEEc-cCCCCce
Confidence 444444333 3566655 44444222 3346677988887762 2333444333565554432 2223453
Q ss_pred eecccccHHHHHHHHhcCCeEEEe
Q 017293 264 TANKIGTYSLALCAKFHNILFYVA 287 (374)
Q Consensus 264 v~nkiGT~~lA~~Ak~~~vPvyV~ 287 (374)
+.. --.++-+|++||+++++=
T Consensus 152 ~~~---l~~i~~l~~~~~~~li~D 172 (416)
T 3isl_A 152 IHP---LKAIGEACRTEDALFIVD 172 (416)
T ss_dssp ECC---CHHHHHHHHHTTCEEEEE
T ss_pred ecC---HHHHHHHHHHcCCEEEEE
Confidence 333 356888999999998873
No 83
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A
Probab=39.21 E-value=75 Score=31.65 Aligned_cols=98 Identities=12% Similarity=0.014 Sum_probs=59.5
Q ss_pred HHHHHHhHhhhcCCCcEEEEecCCCcccccccccH-HHHH-HHHH-HCCCeeEEEEec---------CC----------C
Q 017293 155 SYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTA-LGVI-RALH-SEGVLERAYCSE---------TR----------P 212 (374)
Q Consensus 155 ~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~tv-~~~l-~~a~-~~g~~~~V~v~E---------sr----------P 212 (374)
+.++++|+ +|++|.+.+.+ |+... ...| +.+. ..-++++++-.= .+ |
T Consensus 30 eEAv~lIk-----dGdtV~~gG~~------g~P~~L~~AL~~r~~~g~~~~ltl~~~~~~G~~~~~~~~~~~~~~~~~~~ 98 (455)
T 3qli_A 30 EEAVSSIA-----SGSHLSMGMFA------AEPPALLKALADRATRGDIGDLRVYYFETAKIAGDTILRYELNNRIKPYS 98 (455)
T ss_dssp HHHTTTCC-----TTCEEEECSGG------GSCHHHHHHHHHHHHTTCCCSEEEEESSCCHHHHHTTTCGGGTTTEEEEE
T ss_pred HHHHHhCC-----CCCEEEECCcc------cCHHHHHHHHHHHHhhCCCcceEEEEecccccchhhhhChhhcCcEEEee
Confidence 34566788 89999987543 33322 2222 2221 123467776421 11 3
Q ss_pred CCcchHhHHHHHhhCC--------CCeEEEcchHHHHHHhc-CCCCEEEEcceeeecCCCee
Q 017293 213 FNQGSRLTAFELVHDR--------IPATLIADSAAAALMKD-GRVSAVIVGADRVAANGDTA 265 (374)
Q Consensus 213 ~~eG~~l~a~~L~~~G--------I~vtlI~Dsav~~~m~~-~~vd~VlvGAd~i~~nG~v~ 265 (374)
++.|.. .+.+.+.| ++.+-+--|.++.+++. .++|.+++.|...-.+|.+.
T Consensus 99 ~f~~~~--~R~~i~~G~~~~~~~~~~y~p~~ls~~p~~~~~~~~iDVAli~vs~~D~~G~~s 158 (455)
T 3qli_A 99 MFVTAV--ERALIRRGIEDGGRKVVNYVPSNFHQAPRLLAEEIGIDTFMHTVSPMDCHGYFS 158 (455)
T ss_dssp SSCCHH--HHHHHHHHHHTTTCCCCCCCCCCGGGHHHHHHTTTCCSEEEEEECCCCTTSEEE
T ss_pred CcCChh--HHHHHhCCCcccCcCcEEEECccHHHHHHHHHhcCCCCEEEEEEecCCCCceEE
Confidence 444532 35566666 56666667888888743 47999999999998888764
No 84
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=38.98 E-value=79 Score=23.83 Aligned_cols=79 Identities=9% Similarity=0.032 Sum_probs=47.1
Q ss_pred eEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHH-HHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHh--
Q 017293 203 ERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAA-LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKF-- 279 (374)
Q Consensus 203 ~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~-~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~-- 279 (374)
.+|.++|..|.... .....|.+.|..|....+..-+. .+++.+.|.|++..+ ++++ -|--.+..+-+.
T Consensus 3 ~~ILivdd~~~~~~--~l~~~l~~~g~~v~~~~~~~~al~~l~~~~~dlvllD~~--~p~~-----~g~~~~~~l~~~~~ 73 (122)
T 3gl9_A 3 KKVLLVDDSAVLRK--IVSFNLKKEGYEVIEAENGQIALEKLSEFTPDLIVLXIM--MPVM-----DGFTVLKKLQEKEE 73 (122)
T ss_dssp CEEEEECSCHHHHH--HHHHHHHHTTCEEEEESSHHHHHHHHTTBCCSEEEECSC--CSSS-----CHHHHHHHHHTSTT
T ss_pred ceEEEEeCCHHHHH--HHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEEecc--CCCC-----cHHHHHHHHHhccc
Confidence 36788887775432 23556888899888776654432 345567898888543 3332 233333333222
Q ss_pred -cCCeEEEeccC
Q 017293 280 -HNILFYVAAPL 290 (374)
Q Consensus 280 -~~vPvyV~a~~ 290 (374)
.++|+++++..
T Consensus 74 ~~~~pii~~s~~ 85 (122)
T 3gl9_A 74 WKRIPVIVLTAK 85 (122)
T ss_dssp TTTSCEEEEESC
T ss_pred ccCCCEEEEecC
Confidence 46999998753
No 85
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=38.76 E-value=45 Score=26.17 Aligned_cols=81 Identities=14% Similarity=0.013 Sum_probs=46.3
Q ss_pred CeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHH-HHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHH-
Q 017293 201 VLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAK- 278 (374)
Q Consensus 201 ~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~-~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak- 278 (374)
+..+|.++|..|... ......|.+.|..+....+..-+ ..+++..+|.||+..+ ++++ -|.-.+..+-+
T Consensus 13 ~~~~iLivdd~~~~~--~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--mp~~-----~g~~~~~~lr~~ 83 (143)
T 3m6m_D 13 RSMRMLVADDHEANR--MVLQRLLEKAGHKVLCVNGAEQVLDAMAEEDYDAVIVDLH--MPGM-----NGLDMLKQLRVM 83 (143)
T ss_dssp --CEEEEECSSHHHH--HHHHHHHHC--CEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSS-----CHHHHHHHHHHH
T ss_pred ccceEEEEeCCHHHH--HHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEeCC--CCCC-----CHHHHHHHHHhc
Confidence 457899998877652 22355678889988877665433 2345678999988543 3332 23333333321
Q ss_pred ----hcCCeEEEeccC
Q 017293 279 ----FHNILFYVAAPL 290 (374)
Q Consensus 279 ----~~~vPvyV~a~~ 290 (374)
...+|+++++..
T Consensus 84 ~~~~~~~~pii~~s~~ 99 (143)
T 3m6m_D 84 QASGMRYTPVVVLSAD 99 (143)
T ss_dssp HHTTCCCCCEEEEESC
T ss_pred hhccCCCCeEEEEeCC
Confidence 135899988654
No 86
>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}
Probab=38.00 E-value=1.6e+02 Score=29.41 Aligned_cols=98 Identities=23% Similarity=0.120 Sum_probs=56.7
Q ss_pred HHHHHHHHCCCeeEEEEecCCC-CCcchHhHHHHHhhCCCCeEEEc-c----hHHHHHHhcCCCCEEEEcceeeecCCCe
Q 017293 191 GVIRALHSEGVLERAYCSETRP-FNQGSRLTAFELVHDRIPATLIA-D----SAAAALMKDGRVSAVIVGADRVAANGDT 264 (374)
Q Consensus 191 ~~l~~a~~~g~~~~V~v~EsrP-~~eG~~l~a~~L~~~GI~vtlI~-D----sav~~~m~~~~vd~VlvGAd~i~~nG~v 264 (374)
.+.+.+.++|.. +|+++--++ ..++..-...+|.+.|.+++++. | .++..++..+++|.||-.|- +..+|.+
T Consensus 274 ~lA~~La~~G~~-~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~~~ld~VVh~AG-v~~~~~~ 351 (511)
T 2z5l_A 274 RLARRLAAEGAE-RLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDVAERDALAALVTAYPPNAVFHTAG-ILDDAVI 351 (511)
T ss_dssp HHHHHHHHTTCS-EEEEEESSGGGSTTHHHHHHHHHTTTCEEEEEECCSSCHHHHHHHHHHSCCSEEEECCC-CCCCBCG
T ss_pred HHHHHHHhCCCc-EEEEEecCCcccHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHhcCCCcEEEECCc-ccCCccc
Confidence 344555566643 344443222 22232223557888898887752 2 45566665567999887773 3344422
Q ss_pred -------------ecccccHHHHHHHHhc-CCeEEEeccC
Q 017293 265 -------------ANKIGTYSLALCAKFH-NILFYVAAPL 290 (374)
Q Consensus 265 -------------~nkiGT~~lA~~Ak~~-~vPvyV~a~~ 290 (374)
.|-.|+..+.-+++.. +..++|...|
T Consensus 352 ~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~~V~~SS 391 (511)
T 2z5l_A 352 DTLSPESFETVRGAKVCGAELLHQLTADIKGLDAFVLFSS 391 (511)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHHTSSCTTCCCEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeC
Confidence 2566787777777766 6666766544
No 87
>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A
Probab=37.11 E-value=1.6e+02 Score=26.22 Aligned_cols=108 Identities=18% Similarity=0.098 Sum_probs=59.0
Q ss_pred cEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEE--cc-hHHHHHHhcC
Q 017293 170 FSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLI--AD-SAAAALMKDG 246 (374)
Q Consensus 170 ~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI--~D-sav~~~m~~~ 246 (374)
.+||..+-+|.+ | ..+.+.+.++|. .+|+++.-+|... .+..|...|+.+... .| .++...+ .
T Consensus 6 ~~ilVtGatG~i-----G--~~l~~~L~~~g~-~~V~~~~R~~~~~----~~~~l~~~~~~~~~~D~~d~~~l~~~~--~ 71 (299)
T 2wm3_A 6 KLVVVFGGTGAQ-----G--GSVARTLLEDGT-FKVRVVTRNPRKK----AAKELRLQGAEVVQGDQDDQVIMELAL--N 71 (299)
T ss_dssp CEEEEETTTSHH-----H--HHHHHHHHHHCS-SEEEEEESCTTSH----HHHHHHHTTCEEEECCTTCHHHHHHHH--T
T ss_pred CEEEEECCCchH-----H--HHHHHHHHhcCC-ceEEEEEcCCCCH----HHHHHHHCCCEEEEecCCCHHHHHHHH--h
Confidence 467766655432 2 234455555552 4566665444321 134566677765432 12 3455667 7
Q ss_pred CCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccCc
Q 017293 247 RVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLT 291 (374)
Q Consensus 247 ~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~ 291 (374)
.+|.|+.-|...-....-.|-.|+..+.-+|+..+++-+|...+.
T Consensus 72 ~~d~vi~~a~~~~~~~~~~~~~~~~~~~~aa~~~gv~~iv~~S~~ 116 (299)
T 2wm3_A 72 GAYATFIVTNYWESCSQEQEVKQGKLLADLARRLGLHYVVYSGLE 116 (299)
T ss_dssp TCSEEEECCCHHHHTCHHHHHHHHHHHHHHHHHHTCSEEEECCCC
T ss_pred cCCEEEEeCCCCccccchHHHHHHHHHHHHHHHcCCCEEEEEcCc
Confidence 788887655321100111344577788888888898877765443
No 88
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=36.60 E-value=93 Score=23.29 Aligned_cols=81 Identities=14% Similarity=0.045 Sum_probs=49.4
Q ss_pred eeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHH-HHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHH--
Q 017293 202 LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAK-- 278 (374)
Q Consensus 202 ~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~-~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak-- 278 (374)
..+|.++|..|... +.....|.+.|..|....+..-+ ..+++..+|.||+..+- ++ .-|--.+..+-+
T Consensus 3 ~~~ilivdd~~~~~--~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~D~~l--~~-----~~g~~~~~~l~~~~ 73 (127)
T 3i42_A 3 LQQALIVEDYQAAA--ETFKELLEMLGFQADYVMSGTDALHAMSTRGYDAVFIDLNL--PD-----TSGLALVKQLRALP 73 (127)
T ss_dssp CEEEEEECSCHHHH--HHHHHHHHHTTEEEEEESSHHHHHHHHHHSCCSEEEEESBC--SS-----SBHHHHHHHHHHSC
T ss_pred cceEEEEcCCHHHH--HHHHHHHHHcCCCEEEECCHHHHHHHHHhcCCCEEEEeCCC--CC-----CCHHHHHHHHHhhh
Confidence 35788888776542 22355688889888877765433 33456789999887643 22 223333333433
Q ss_pred -hcCCeEEEeccCc
Q 017293 279 -FHNILFYVAAPLT 291 (374)
Q Consensus 279 -~~~vPvyV~a~~~ 291 (374)
..++|+++++...
T Consensus 74 ~~~~~~ii~~s~~~ 87 (127)
T 3i42_A 74 MEKTSKFVAVSGFA 87 (127)
T ss_dssp CSSCCEEEEEECC-
T ss_pred ccCCCCEEEEECCc
Confidence 3579999987643
No 89
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=36.38 E-value=73 Score=23.06 Aligned_cols=78 Identities=6% Similarity=-0.061 Sum_probs=46.5
Q ss_pred EEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHH-HHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHh---
Q 017293 204 RAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKF--- 279 (374)
Q Consensus 204 ~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~-~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~--- 279 (374)
+|.+.|..|.... .....|...|..+....+..-+ ..+++...|.|++..+- .+ .-|.-.+..+.+.
T Consensus 3 ~iliv~~~~~~~~--~l~~~l~~~g~~v~~~~~~~~~~~~l~~~~~dlii~d~~~--~~-----~~~~~~~~~l~~~~~~ 73 (119)
T 2j48_A 3 HILLLEEEDEAAT--VVCEMLTAAGFKVIWLVDGSTALDQLDLLQPIVILMAWPP--PD-----QSCLLLLQHLREHQAD 73 (119)
T ss_dssp EEEEECCCHHHHH--HHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEECST--TC-----CTHHHHHHHHHHTCCC
T ss_pred EEEEEeCCHHHHH--HHHHHHHhCCcEEEEecCHHHHHHHHHhcCCCEEEEecCC--CC-----CCHHHHHHHHHhcccc
Confidence 5777777665422 2355678889888877654332 23445678999886542 22 2233334444444
Q ss_pred cCCeEEEeccC
Q 017293 280 HNILFYVAAPL 290 (374)
Q Consensus 280 ~~vPvyV~a~~ 290 (374)
.++|++++++.
T Consensus 74 ~~~~ii~~~~~ 84 (119)
T 2j48_A 74 PHPPLVLFLGE 84 (119)
T ss_dssp SSCCCEEEESS
T ss_pred CCCCEEEEeCC
Confidence 47999998764
No 90
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=36.04 E-value=2.3e+02 Score=25.06 Aligned_cols=95 Identities=9% Similarity=-0.054 Sum_probs=54.6
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcchHh---HHHHHhhCCCCeEEEcc--h-H---HHHHHhcCCCCEEEEcceeeecCC
Q 017293 192 VIRALHSEGVLERAYCSETRPFNQGSRL---TAFELVHDRIPATLIAD--S-A---AAALMKDGRVSAVIVGADRVAANG 262 (374)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~eG~~l---~a~~L~~~GI~vtlI~D--s-a---v~~~m~~~~vd~VlvGAd~i~~nG 262 (374)
.+..|...+..++++-+.. | .+..+. ....+...|++++...- . . +....++.++|.|++|...- |
T Consensus 27 A~~la~~~~a~l~ll~v~~-~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dliV~G~~~~---~ 101 (290)
T 3mt0_A 27 AQLIAGVTQSHLHLLVCEK-R-RDHSAALNDLAQELREEGYSVSTNQAWKDSLHQTIIAEQQAEGCGLIIKQHFPD---N 101 (290)
T ss_dssp HHHHHHHHCCEEEEEEECS-S-SCCHHHHHHHHHHHHHTTCCEEEEEECSSSHHHHHHHHHHHHTCSEEEEECCCS---C
T ss_pred HHHHHHhcCCeEEEEEeeC-c-HHHHHHHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhcCCCEEEEecccC---C
Confidence 4555655666776554433 4 222222 23346678998776532 2 2 22232357899999999753 2
Q ss_pred Ceec-ccccHHHHHHHHhcCCeEEEeccCcc
Q 017293 263 DTAN-KIGTYSLALCAKFHNILFYVAAPLTS 292 (374)
Q Consensus 263 ~v~n-kiGT~~lA~~Ak~~~vPvyV~a~~~K 292 (374)
.+-. -.|+..-.+ .++.++||+++-+...
T Consensus 102 ~~~~~~~gs~~~~v-l~~~~~PVlvv~~~~~ 131 (290)
T 3mt0_A 102 PLKKAILTPDDWKL-LRFAPCPVLMTKTARP 131 (290)
T ss_dssp TTSTTSCCHHHHHH-HHHCSSCEEEECCCSC
T ss_pred chhhcccCHHHHHH-HhcCCCCEEEecCCCC
Confidence 2222 256655544 5678999999864443
No 91
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=35.89 E-value=96 Score=23.48 Aligned_cols=79 Identities=6% Similarity=-0.012 Sum_probs=46.2
Q ss_pred eEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHH-HHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHh-c
Q 017293 203 ERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKF-H 280 (374)
Q Consensus 203 ~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~-~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~-~ 280 (374)
.+|.++|..|.... .....|...|..+....+..-+ ..+.+..+|.|++..+ +++. -|--.+..+.+. .
T Consensus 4 ~~ilivdd~~~~~~--~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvl~D~~--l~~~-----~g~~~~~~l~~~~~ 74 (136)
T 1mvo_A 4 KKILVVDDEESIVT--LLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVM--LPKL-----DGIEVCKQLRQQKL 74 (136)
T ss_dssp CEEEEECSCHHHHH--HHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESS--CSSS-----CHHHHHHHHHHTTC
T ss_pred CEEEEEECCHHHHH--HHHHHHHHCCcEEEEecCHHHHHHHHhhcCCCEEEEecC--CCCC-----CHHHHHHHHHcCCC
Confidence 46778887765422 2245677788888766654332 2344567899988654 2322 233333333333 5
Q ss_pred CCeEEEeccC
Q 017293 281 NILFYVAAPL 290 (374)
Q Consensus 281 ~vPvyV~a~~ 290 (374)
.+|+++++..
T Consensus 75 ~~~ii~~s~~ 84 (136)
T 1mvo_A 75 MFPILMLTAK 84 (136)
T ss_dssp CCCEEEEECT
T ss_pred CCCEEEEECC
Confidence 7899988654
No 92
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=35.77 E-value=1.1e+02 Score=23.33 Aligned_cols=81 Identities=14% Similarity=0.126 Sum_probs=50.7
Q ss_pred eeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHH-HHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHH--
Q 017293 202 LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAK-- 278 (374)
Q Consensus 202 ~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~-~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak-- 278 (374)
..+|.++|..|...- .....|.+.|+.|....+..-+ ..+++.+.|.||+..+ ++++ -|--.+..+-+
T Consensus 6 ~~~iLivdd~~~~~~--~l~~~l~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~--l~~~-----~g~~~~~~l~~~~ 76 (140)
T 3grc_A 6 RPRILICEDDPDIAR--LLNLMLEKGGFDSDMVHSAAQALEQVARRPYAAMTVDLN--LPDQ-----DGVSLIRALRRDS 76 (140)
T ss_dssp CSEEEEECSCHHHHH--HHHHHHHHTTCEEEEECSHHHHHHHHHHSCCSEEEECSC--CSSS-----CHHHHHHHHHTSG
T ss_pred CCCEEEEcCCHHHHH--HHHHHHHHCCCeEEEECCHHHHHHHHHhCCCCEEEEeCC--CCCC-----CHHHHHHHHHhCc
Confidence 467888888776532 2355688889988777765433 3345678999988654 2222 23333333332
Q ss_pred -hcCCeEEEeccCc
Q 017293 279 -FHNILFYVAAPLT 291 (374)
Q Consensus 279 -~~~vPvyV~a~~~ 291 (374)
..++|+++++...
T Consensus 77 ~~~~~~ii~~s~~~ 90 (140)
T 3grc_A 77 RTRDLAIVVVSANA 90 (140)
T ss_dssp GGTTCEEEEECTTH
T ss_pred ccCCCCEEEEecCC
Confidence 3589999987654
No 93
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=35.75 E-value=1.9e+02 Score=24.13 Aligned_cols=33 Identities=3% Similarity=-0.062 Sum_probs=24.0
Q ss_pred HHHHhhCCCCeEEEcchHHHHHHhcCC---CCEEEEcc
Q 017293 221 AFELVHDRIPATLIADSAAAALMKDGR---VSAVIVGA 255 (374)
Q Consensus 221 a~~L~~~GI~vtlI~Dsav~~~m~~~~---vd~VlvGA 255 (374)
++.+++.|+++..|+++.-+.+- +. +|.+|.-.
T Consensus 133 ~~~ak~~g~~vI~IT~~~~s~La--~~~~~ad~~l~~~ 168 (199)
T 1x92_A 133 IQAAHDREMLVVALTGRDGGGMA--SLLLPEDVEIRVP 168 (199)
T ss_dssp HHHHHHTTCEEEEEECTTCHHHH--HHCCTTCEEEECS
T ss_pred HHHHHHCCCEEEEEECCCCCcHH--hccccCCEEEEeC
Confidence 55677899999999987655554 44 88776543
No 94
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=35.65 E-value=1.9e+02 Score=23.88 Aligned_cols=63 Identities=11% Similarity=-0.028 Sum_probs=37.9
Q ss_pred HHHHhhCCCCeEEEc-ch-HHHHHHhc-CCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccC
Q 017293 221 AFELVHDRIPATLIA-DS-AAAALMKD-GRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPL 290 (374)
Q Consensus 221 a~~L~~~GI~vtlI~-Ds-av~~~m~~-~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~ 290 (374)
+..|...|+++..++ |. .....+.. .+=|.||+ +...|. ..-+..++-.||..|+|+++++..
T Consensus 58 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~----iS~sG~---t~~~~~~~~~ak~~g~~vi~IT~~ 123 (187)
T 3sho_A 58 GHGLNSLGIRTTVLTEGGSTLTITLANLRPTDLMIG----VSVWRY---LRDTVAALAGAAERGVPTMALTDS 123 (187)
T ss_dssp HHHHHHTTCCEEEECCCTHHHHHHHHTCCTTEEEEE----ECCSSC---CHHHHHHHHHHHHTTCCEEEEESC
T ss_pred HHHHHhcCCCEEEecCCchhHHHHHhcCCCCCEEEE----EeCCCC---CHHHHHHHHHHHHCCCCEEEEeCC
Confidence 344566788888887 33 22222211 33344443 334563 344677788999999999998753
No 95
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=35.58 E-value=1e+02 Score=25.23 Aligned_cols=81 Identities=12% Similarity=0.025 Sum_probs=50.9
Q ss_pred eeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHH-HHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHH-h
Q 017293 202 LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAA-LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAK-F 279 (374)
Q Consensus 202 ~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~-~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak-~ 279 (374)
..+|.++|..|.... .....|.+.|..|....|..-+. .+.+..+|.||+..+ ++++ -|--.+..+-+ .
T Consensus 7 ~~~iLivdd~~~~~~--~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--lp~~-----~g~~~~~~l~~~~ 77 (184)
T 3rqi_A 7 DKNFLVIDDNEVFAG--TLARGLERRGYAVRQAHNKDEALKLAGAEKFEFITVXLH--LGND-----SGLSLIAPLCDLQ 77 (184)
T ss_dssp CCEEEEECSCHHHHH--HHHHHHHHTTCEEEEECSHHHHHHHHTTSCCSEEEECSE--ETTE-----ESHHHHHHHHHHC
T ss_pred CCeEEEEcCCHHHHH--HHHHHHHHCCCEEEEeCCHHHHHHHHhhCCCCEEEEecc--CCCc-----cHHHHHHHHHhcC
Confidence 457888888876532 23556888899887777665443 345677999988653 3432 24333333333 3
Q ss_pred cCCeEEEeccCc
Q 017293 280 HNILFYVAAPLT 291 (374)
Q Consensus 280 ~~vPvyV~a~~~ 291 (374)
.++|+++++...
T Consensus 78 ~~~~ii~lt~~~ 89 (184)
T 3rqi_A 78 PDARILVLTGYA 89 (184)
T ss_dssp TTCEEEEEESSC
T ss_pred CCCCEEEEeCCC
Confidence 579999987643
No 96
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=35.37 E-value=45 Score=26.22 Aligned_cols=38 Identities=21% Similarity=0.297 Sum_probs=28.6
Q ss_pred HHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEe
Q 017293 242 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (374)
Q Consensus 242 ~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~ 287 (374)
.++++++.+||+..|+ -.| +...+-..|+.++||+|.+
T Consensus 32 ai~~gka~lViiA~D~-~~~-------~~~~l~~~c~~~~Vp~~~~ 69 (110)
T 3cpq_A 32 FVKHGEGKLVVLAGNI-PKD-------LEEDVKYYAKLSNIPVYQH 69 (110)
T ss_dssp HHHTTCCSEEEECTTC-BHH-------HHHHHHHHHHHTTCCEEEC
T ss_pred HHHcCCceEEEEeCCC-CHH-------HHHHHHHHHHHcCCCEEEE
Confidence 3455889999998888 444 2455666799999999986
No 97
>2ri0_A Glucosamine-6-phosphate deaminase; carbohydrate metabolism,; HET: BTB; 1.60A {Streptococcus mutans} PDB: 2ri1_A*
Probab=35.28 E-value=1.9e+02 Score=25.17 Aligned_cols=107 Identities=11% Similarity=0.101 Sum_probs=55.1
Q ss_pred HHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHC---CCeeEEEEec---CCCCCc---chHhHHH
Q 017293 152 AIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSE---GVLERAYCSE---TRPFNQ---GSRLTAF 222 (374)
Q Consensus 152 ~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~---g~~~~V~v~E---srP~~e---G~~l~a~ 222 (374)
.+++.++++|.+.+.+++. ++-.+.. +|...+.+.+.+. -++.+|+-++ +-|... -..++.+
T Consensus 12 ~l~~~aA~~l~~~i~~~~~-~i~ls~G--------~T~~~~~~~L~~~~~~~~~v~v~~ldEr~gv~~~~~~sn~~~~~~ 82 (234)
T 2ri0_A 12 EGSKVAFRMLEEEITFGAK-TLGLATG--------STPLELYKEIRESHLDFSDMVSINLDEYVGLSADDKQSYAYFMKQ 82 (234)
T ss_dssp HHHHHHHHHHHHHHHTTCC-EEEECCS--------STTHHHHHHHHTSCCCCTTCEEEESEEETTCCTTSTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCC-EEEEcCC--------CCHHHHHHHHHhcCCChhheEEEeCeeecCCCCCChHHHHHHHHH
Confidence 3444445555443332345 4444321 4666666665442 2356666555 233221 1223344
Q ss_pred HHh-hCCCCeEEEcchHH----------HHHHhcCCCCEEEEcceeeecCCCee-ccccc
Q 017293 223 ELV-HDRIPATLIADSAA----------AALMKDGRVSAVIVGADRVAANGDTA-NKIGT 270 (374)
Q Consensus 223 ~L~-~~GI~vtlI~Dsav----------~~~m~~~~vd~VlvGAd~i~~nG~v~-nkiGT 270 (374)
.|. +.+++..++++... ...++..++|.+|+|-= .||.+. |.-|+
T Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~~~~Dl~llGiG---~dgh~a~l~p~~ 139 (234)
T 2ri0_A 83 NLFAAKPFKKSYLPNGLAADLAKETEYYDQILAQYPIDLQILGIG---RNAHIGFNEPGT 139 (234)
T ss_dssp HTTTTSCCSEEECCCTTCSCHHHHHHHHHHHHHHSCCSEEEECCC---TTSCBTTBCTTC
T ss_pred HHhccCCCcHhhcCCCCCCCHHHHHHHHHHHHHhCCCCEEEEccC---CCCCchhcCCCC
Confidence 454 45888888876421 12233357999999964 777653 33444
No 98
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=35.27 E-value=83 Score=24.32 Aligned_cols=83 Identities=12% Similarity=0.016 Sum_probs=50.1
Q ss_pred CCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHH-HHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHH
Q 017293 200 GVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAK 278 (374)
Q Consensus 200 g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~-~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak 278 (374)
.+..+|.++|..|...- . ....|...|+.|....+..-+ ..+++..+|.||+..+- .++ -|--.+..+-+
T Consensus 6 ~~~~~iLivd~~~~~~~-~-l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l--~~~-----~g~~~~~~l~~ 76 (147)
T 2zay_A 6 GKWWRIMLVDTQLPALA-A-SISALSQEGFDIIQCGNAIEAVPVAVKTHPHLIITEANM--PKI-----SGMDLFNSLKK 76 (147)
T ss_dssp --CEEEEEECTTGGGGH-H-HHHHHHHHTEEEEEESSHHHHHHHHHHHCCSEEEEESCC--SSS-----CHHHHHHHHHT
T ss_pred CCCceEEEEeCCHHHHH-H-HHHHHHHcCCeEEEeCCHHHHHHHHHcCCCCEEEEcCCC--CCC-----CHHHHHHHHHc
Confidence 35678888888876532 2 355688889988866654332 23445679999987643 221 23333333333
Q ss_pred ---hcCCeEEEeccCc
Q 017293 279 ---FHNILFYVAAPLT 291 (374)
Q Consensus 279 ---~~~vPvyV~a~~~ 291 (374)
..++|+++++...
T Consensus 77 ~~~~~~~pii~ls~~~ 92 (147)
T 2zay_A 77 NPQTASIPVIALSGRA 92 (147)
T ss_dssp STTTTTSCEEEEESSC
T ss_pred CcccCCCCEEEEeCCC
Confidence 3579999987643
No 99
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=34.89 E-value=1.8e+02 Score=25.88 Aligned_cols=89 Identities=11% Similarity=0.121 Sum_probs=48.6
Q ss_pred HHHCCCeeEEEEecCCCCC-cchHhHHHHHhhCCCCeEEE--cch---HHHHHHhcCCCCEEEEcceeeecCCCeec-cc
Q 017293 196 LHSEGVLERAYCSETRPFN-QGSRLTAFELVHDRIPATLI--ADS---AAAALMKDGRVSAVIVGADRVAANGDTAN-KI 268 (374)
Q Consensus 196 a~~~g~~~~V~v~EsrP~~-eG~~l~a~~L~~~GI~vtlI--~Ds---av~~~m~~~~vd~VlvGAd~i~~nG~v~n-ki 268 (374)
|...+..++|+-+...+.. +-.+-....|.+.|+++... ..+ ++..+.++.++|.+++|+..- |.+-. -.
T Consensus 194 a~~~~~~l~ll~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dLlV~G~~~~---~~~~~~~~ 270 (294)
T 3loq_A 194 VKKTGGELHIIHVSEDGDKTADLRVMEEVIGAEGIEVHVHIESGTPHKAILAKREEINATTIFMGSRGA---GSVMTMIL 270 (294)
T ss_dssp HHHHTCEEEEEEECSSSCCHHHHHHHHHHHHHTTCCEEEEEECSCHHHHHHHHHHHTTCSEEEEECCCC---SCHHHHHH
T ss_pred hhhcCCEEEEEEEccCchHHHHHHHHHHHHHHcCCcEEEEEecCCHHHHHHHHHHhcCcCEEEEeCCCC---CCccceee
Confidence 3344666665544332221 11111244677889885443 222 223333456899999999752 22222 24
Q ss_pred ccHHHHHHHHhcCCeEEEec
Q 017293 269 GTYSLALCAKFHNILFYVAA 288 (374)
Q Consensus 269 GT~~lA~~Ak~~~vPvyV~a 288 (374)
|+..-.+ .++-.+||+++=
T Consensus 271 Gs~~~~v-l~~~~~pvLvv~ 289 (294)
T 3loq_A 271 GSTSESV-IRRSPVPVFVCK 289 (294)
T ss_dssp HCHHHHH-HHHCSSCEEEEC
T ss_pred CcHHHHH-HhcCCCCEEEEC
Confidence 5544444 467789999973
No 100
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=34.83 E-value=91 Score=23.42 Aligned_cols=82 Identities=11% Similarity=0.055 Sum_probs=48.0
Q ss_pred eeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHH-HHHhcC-CCCEEEEcceeeecCCCeecccccHHHHHHHHh
Q 017293 202 LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDG-RVSAVIVGADRVAANGDTANKIGTYSLALCAKF 279 (374)
Q Consensus 202 ~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~-~~m~~~-~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~ 279 (374)
..+|.++|..|.... .....|...|+.+....+..-+ ..+++. ..|.||+..+- .+| .-|--.+..+-+.
T Consensus 5 ~~~ilivdd~~~~~~--~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l--~~~----~~g~~~~~~l~~~ 76 (132)
T 2rdm_A 5 AVTILLADDEAILLL--DFESTLTDAGFLVTAVSSGAKAIEMLKSGAAIDGVVTDIRF--CQP----PDGWQVARVAREI 76 (132)
T ss_dssp SCEEEEECSSHHHHH--HHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCCEEEEESCC--SSS----SCHHHHHHHHHHH
T ss_pred CceEEEEcCcHHHHH--HHHHHHHHcCCEEEEECCHHHHHHHHHcCCCCCEEEEeeeC--CCC----CCHHHHHHHHHhc
Confidence 457888887765422 2355678889988876654332 334444 79999886542 221 1232233333333
Q ss_pred -cCCeEEEeccCc
Q 017293 280 -HNILFYVAAPLT 291 (374)
Q Consensus 280 -~~vPvyV~a~~~ 291 (374)
.++|+++++...
T Consensus 77 ~~~~~ii~~s~~~ 89 (132)
T 2rdm_A 77 DPNMPIVYISGHA 89 (132)
T ss_dssp CTTCCEEEEESSC
T ss_pred CCCCCEEEEeCCc
Confidence 479999987643
No 101
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=33.96 E-value=84 Score=25.61 Aligned_cols=61 Identities=10% Similarity=0.151 Sum_probs=36.6
Q ss_pred HHhhCCCC-eEEEc--ch---HHHHHHhcCCCCEEEEcceeeecCCCeec-ccccHHHHHHHHhcCCeEEEe
Q 017293 223 ELVHDRIP-ATLIA--DS---AAAALMKDGRVSAVIVGADRVAANGDTAN-KIGTYSLALCAKFHNILFYVA 287 (374)
Q Consensus 223 ~L~~~GI~-vtlI~--Ds---av~~~m~~~~vd~VlvGAd~i~~nG~v~n-kiGT~~lA~~Ak~~~vPvyV~ 287 (374)
.+.+.|++ +.... .. .+-.+.++.++|++++|+..- |.+-. -.|+-.--+ .++-.+||+|+
T Consensus 89 ~~~~~gv~~v~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~---~~~~~~~lGSva~~v-l~~a~~PVlvV 156 (163)
T 1tq8_A 89 RAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGL---STIAGRLLGSVPANV-SRRAKVDVLIV 156 (163)
T ss_dssp HHHTTTCCEEEEEEECSSHHHHHHHHHHHTTCSEEEEECCCC---CSHHHHHTBBHHHHH-HHHTTCEEEEE
T ss_pred HHHHcCCCeEEEEEecCCHHHHHHHHHHhcCCCEEEECCCCC---CcccceeeccHHHHH-HHhCCCCEEEE
Confidence 35567888 65332 22 222333457999999999753 22222 256655544 45567999998
No 102
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=33.15 E-value=58 Score=24.90 Aligned_cols=84 Identities=12% Similarity=-0.034 Sum_probs=49.1
Q ss_pred CCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEE-EcchHH-HHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHH
Q 017293 200 GVLERAYCSETRPFNQGSRLTAFELVHDRIPATL-IADSAA-AALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCA 277 (374)
Q Consensus 200 g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtl-I~Dsav-~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~A 277 (374)
....+|.++|..|.... .....|.+.|+.+.. ..+..- -..+.+...|.||+..+- .+| .-|--.+..+-
T Consensus 7 ~~~~~iLivdd~~~~~~--~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~~--~~~----~~g~~~~~~l~ 78 (140)
T 3cg0_A 7 DDLPGVLIVEDGRLAAA--TLRIQLESLGYDVLGVFDNGEEAVRCAPDLRPDIALVDIML--CGA----LDGVETAARLA 78 (140)
T ss_dssp -CCCEEEEECCBHHHHH--HHHHHHHHHTCEEEEEESSHHHHHHHHHHHCCSEEEEESSC--CSS----SCHHHHHHHHH
T ss_pred CCCceEEEEECCHHHHH--HHHHHHHHCCCeeEEEECCHHHHHHHHHhCCCCEEEEecCC--CCC----CCHHHHHHHHH
Confidence 34578888888775422 234567778998884 554322 233445679999987642 211 12333333333
Q ss_pred HhcCCeEEEeccCc
Q 017293 278 KFHNILFYVAAPLT 291 (374)
Q Consensus 278 k~~~vPvyV~a~~~ 291 (374)
+..++|+++++...
T Consensus 79 ~~~~~~ii~ls~~~ 92 (140)
T 3cg0_A 79 AGCNLPIIFITSSQ 92 (140)
T ss_dssp HHSCCCEEEEECCC
T ss_pred hCCCCCEEEEecCC
Confidence 33789999987643
No 103
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*
Probab=32.94 E-value=1.1e+02 Score=27.48 Aligned_cols=97 Identities=15% Similarity=0.147 Sum_probs=55.1
Q ss_pred EEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEc--c-hHHHHHHhcCC
Q 017293 171 SVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIA--D-SAAAALMKDGR 247 (374)
Q Consensus 171 ~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~--D-sav~~~m~~~~ 247 (374)
+||..+-+|.+ | ..+++.+.++|. +|+++--+|. ..... ..+|...|+.+...- | .++..++ ..
T Consensus 13 ~ilVtGatG~i-----G--~~l~~~L~~~g~--~V~~l~R~~~-~~~~~-~~~l~~~~v~~v~~Dl~d~~~l~~a~--~~ 79 (318)
T 2r6j_A 13 KILIFGGTGYI-----G--NHMVKGSLKLGH--PTYVFTRPNS-SKTTL-LDEFQSLGAIIVKGELDEHEKLVELM--KK 79 (318)
T ss_dssp CEEEETTTSTT-----H--HHHHHHHHHTTC--CEEEEECTTC-SCHHH-HHHHHHTTCEEEECCTTCHHHHHHHH--TT
T ss_pred eEEEECCCchH-----H--HHHHHHHHHCCC--cEEEEECCCC-chhhH-HHHhhcCCCEEEEecCCCHHHHHHHH--cC
Confidence 56666655533 2 234455566674 4555543332 11121 234667787654321 2 3456667 66
Q ss_pred CCEEEEcceeeecCCCeecccccHHHHHHHHhcC-CeEEEe
Q 017293 248 VSAVIVGADRVAANGDTANKIGTYSLALCAKFHN-ILFYVA 287 (374)
Q Consensus 248 vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~-vPvyV~ 287 (374)
+|.|+--|- ..+-.++..+.-+|+..+ ++-+|.
T Consensus 80 ~d~vi~~a~-------~~~~~~~~~l~~aa~~~g~v~~~v~ 113 (318)
T 2r6j_A 80 VDVVISALA-------FPQILDQFKILEAIKVAGNIKRFLP 113 (318)
T ss_dssp CSEEEECCC-------GGGSTTHHHHHHHHHHHCCCCEEEC
T ss_pred CCEEEECCc-------hhhhHHHHHHHHHHHhcCCCCEEEe
Confidence 777765442 233567888888899888 887774
No 104
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=32.76 E-value=1.3e+02 Score=27.47 Aligned_cols=110 Identities=15% Similarity=0.071 Sum_probs=60.8
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhh-------CCCCeEEE--cc-h
Q 017293 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVH-------DRIPATLI--AD-S 237 (374)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~-------~GI~vtlI--~D-s 237 (374)
.+.+||..+-+|.+ | ..+++.+.++| .+|+++.-++...... ...+.. .++.+... .| .
T Consensus 24 ~~~~vlVtGatG~i-----G--~~l~~~L~~~g--~~V~~~~r~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Dl~d~~ 92 (351)
T 3ruf_A 24 SPKTWLITGVAGFI-----G--SNLLEKLLKLN--QVVIGLDNFSTGHQYN--LDEVKTLVSTEQWSRFCFIEGDIRDLT 92 (351)
T ss_dssp SCCEEEEETTTSHH-----H--HHHHHHHHHTT--CEEEEEECCSSCCHHH--HHHHHHTSCHHHHTTEEEEECCTTCHH
T ss_pred CCCeEEEECCCcHH-----H--HHHHHHHHHCC--CEEEEEeCCCCCchhh--hhhhhhccccccCCceEEEEccCCCHH
Confidence 35677777655533 2 23455666666 4666665554432222 223443 34443322 12 3
Q ss_pred HHHHHHhcCCCCEEEEcceeeecCC--------CeecccccHHHHHHHHhcCCeEEEeccC
Q 017293 238 AAAALMKDGRVSAVIVGADRVAANG--------DTANKIGTYSLALCAKFHNILFYVAAPL 290 (374)
Q Consensus 238 av~~~m~~~~vd~VlvGAd~i~~nG--------~v~nkiGT~~lA~~Ak~~~vPvyV~a~~ 290 (374)
.+..++ .++|.||--|-....+. --.|-.||..+.-+|+..+++-+|...+
T Consensus 93 ~~~~~~--~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS 151 (351)
T 3ruf_A 93 TCEQVM--KGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAAS 151 (351)
T ss_dssp HHHHHT--TTCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred HHHHHh--cCCCEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEec
Confidence 355566 67888876653211110 1357889999999999999865555444
No 105
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A
Probab=32.70 E-value=3.8e+02 Score=26.53 Aligned_cols=20 Identities=35% Similarity=0.265 Sum_probs=17.1
Q ss_pred ecCCCCccEEEeCCCCcccCC
Q 017293 338 VTPANLITGIITEKQGVVTKA 358 (374)
Q Consensus 338 ~tP~~lIt~iITE~~Gi~~p~ 358 (374)
.||.+.|+.||||. |+..-.
T Consensus 403 tt~~~~v~~vvTE~-Gva~l~ 422 (455)
T 3qli_A 403 TTPRIDTHYIVTEF-GAVNLK 422 (455)
T ss_dssp SBCTTTCCEEEETT-EEEECT
T ss_pred ccCcccccEEEecc-EEEECC
Confidence 46999999999999 997644
No 106
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=32.67 E-value=97 Score=22.76 Aligned_cols=78 Identities=9% Similarity=0.012 Sum_probs=45.0
Q ss_pred EEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHH-HHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCC
Q 017293 204 RAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAA-LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNI 282 (374)
Q Consensus 204 ~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~-~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~v 282 (374)
+|.++|..|.... .....|.+.|..+....+..-+. .+.+...|.|++..+ +++. -|--.+..+.+...+
T Consensus 3 ~ilivdd~~~~~~--~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~D~~--l~~~-----~g~~~~~~l~~~~~~ 73 (121)
T 1zh2_A 3 NVLIVEDEQAIRR--FLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLG--LPDG-----DGIEFIRDLRQWSAV 73 (121)
T ss_dssp EEEEECSCHHHHH--HHHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEEESE--ETTE-----EHHHHHHHHHTTCCC
T ss_pred EEEEEeCCHHHHH--HHHHHHhcCCCEEEEeCCHHHHHHHHhcCCCCEEEEeCC--CCCC-----cHHHHHHHHHhCCCC
Confidence 5777777665422 22455777888877666544332 233457899988553 3321 233333334445578
Q ss_pred eEEEeccC
Q 017293 283 LFYVAAPL 290 (374)
Q Consensus 283 PvyV~a~~ 290 (374)
|+++++..
T Consensus 74 ~ii~~s~~ 81 (121)
T 1zh2_A 74 PVIVLSAR 81 (121)
T ss_dssp CEEEEESC
T ss_pred cEEEEECC
Confidence 99887653
No 107
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=32.51 E-value=1e+02 Score=23.58 Aligned_cols=82 Identities=9% Similarity=-0.023 Sum_probs=49.9
Q ss_pred CeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHH-HHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHH-
Q 017293 201 VLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAA-AALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAK- 278 (374)
Q Consensus 201 ~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav-~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak- 278 (374)
...+|.++|..|.... .....|...|+.|....+..- -..+++...|.||+..+- .+ .-|--.+..+.+
T Consensus 6 ~~~~iLivdd~~~~~~--~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l--~~-----~~g~~~~~~l~~~ 76 (142)
T 3cg4_A 6 HKGDVMIVDDDAHVRI--AVKTILSDAGFHIISADSGGQCIDLLKKGFSGVVLLDIMM--PG-----MDGWDTIRAILDN 76 (142)
T ss_dssp CCCEEEEECSCHHHHH--HHHHHHHHTTCEEEEESSHHHHHHHHHTCCCEEEEEESCC--SS-----SCHHHHHHHHHHT
T ss_pred CCCeEEEEcCCHHHHH--HHHHHHHHCCeEEEEeCCHHHHHHHHHhcCCCEEEEeCCC--CC-----CCHHHHHHHHHhh
Confidence 4567888887765422 235568888998887766433 234456678999887643 22 123333333433
Q ss_pred --hcCCeEEEeccCc
Q 017293 279 --FHNILFYVAAPLT 291 (374)
Q Consensus 279 --~~~vPvyV~a~~~ 291 (374)
..++|+++++...
T Consensus 77 ~~~~~~pii~~s~~~ 91 (142)
T 3cg4_A 77 SLEQGIAIVMLTAKN 91 (142)
T ss_dssp TCCTTEEEEEEECTT
T ss_pred cccCCCCEEEEECCC
Confidence 3468999987643
No 108
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=32.37 E-value=47 Score=29.63 Aligned_cols=87 Identities=8% Similarity=-0.053 Sum_probs=46.2
Q ss_pred CCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchH---HHHHHhcCCCCEEEEcceeeecCCCe-eccc-ccHHHH
Q 017293 200 GVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSA---AAALMKDGRVSAVIVGADRVAANGDT-ANKI-GTYSLA 274 (374)
Q Consensus 200 g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsa---v~~~m~~~~vd~VlvGAd~i~~nG~v-~nki-GT~~lA 274 (374)
....+|.|.+-.|...-..+ ...|...|+++.+++-.. +...+ .++|.+|+.--.....+.. .... +...+.
T Consensus 10 ~~~~~~~~i~~~~~~~~~~i-~~~l~~~G~~v~v~~~~~~~~~~~~l--~~~Dglil~GG~~~~~~~~~~~~l~~~~~~i 86 (239)
T 1o1y_A 10 HHHVRVLAIRHVEIEDLGMM-EDIFREKNWSFDYLDTPKGEKLERPL--EEYSLVVLLGGYMGAYEEEKYPFLKYEFQLI 86 (239)
T ss_dssp CCCCEEEEECSSTTSSCTHH-HHHHHHTTCEEEEECGGGTCCCSSCG--GGCSEEEECCCSCCTTCTTTCTHHHHHHHHH
T ss_pred cceeEEEEEECCCCCCchHH-HHHHHhCCCcEEEeCCcCccccccch--hcCCEEEECCCCccccCCccChhHHHHHHHH
Confidence 34678888888887654444 567889999998665322 11123 4566665432111111110 0001 122222
Q ss_pred HHHHhcCCeEEEecc
Q 017293 275 LCAKFHNILFYVAAP 289 (374)
Q Consensus 275 ~~Ak~~~vPvyV~a~ 289 (374)
.-|...++|++-+|-
T Consensus 87 ~~~~~~~~PiLGIC~ 101 (239)
T 1o1y_A 87 EEILKKEIPFLGICL 101 (239)
T ss_dssp HHHHHHTCCEEEETH
T ss_pred HHHHHCCCCEEEEch
Confidence 234457899997774
No 109
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=31.93 E-value=1.1e+02 Score=24.38 Aligned_cols=48 Identities=15% Similarity=0.090 Sum_probs=31.8
Q ss_pred cHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEc
Q 017293 188 TALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIA 235 (374)
Q Consensus 188 tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~ 235 (374)
.+...|..|.+.|.++++++..........+-....|.+.|+++....
T Consensus 41 ~i~~aL~~a~~rGV~Vril~~~~~~~~~~~~~~~~~L~~~gv~v~~~~ 88 (155)
T 1byr_A 41 DIMKALVAAKKRGVDVKIVIDERGNTGRASIAAMNYIANSGIPLRTDS 88 (155)
T ss_dssp HHHHHHHHHHHTTCEEEEEEESTTCCSHHHHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHHHHCCCEEEEEEeCccccccccHHHHHHHHHCCCeEEEcC
Confidence 466677788888999998887653221121222456888999988763
No 110
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=31.89 E-value=95 Score=24.33 Aligned_cols=83 Identities=13% Similarity=-0.007 Sum_probs=51.5
Q ss_pred CCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHH-HHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHH
Q 017293 200 GVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAK 278 (374)
Q Consensus 200 g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~-~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak 278 (374)
....+|.++|..|.... .....|.+.|..|....+..-+ ..+++..+|.||+..+- .++ -|--.+..+-+
T Consensus 12 ~~~~~ILivdd~~~~~~--~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l--~~~-----~g~~~~~~l~~ 82 (153)
T 3hv2_A 12 TRRPEILLVDSQEVILQ--RLQQLLSPLPYTLHFARDATQALQLLASREVDLVISAAHL--PQM-----DGPTLLARIHQ 82 (153)
T ss_dssp CSCCEEEEECSCHHHHH--HHHHHHTTSSCEEEEESSHHHHHHHHHHSCCSEEEEESCC--SSS-----CHHHHHHHHHH
T ss_pred cCCceEEEECCCHHHHH--HHHHHhcccCcEEEEECCHHHHHHHHHcCCCCEEEEeCCC--CcC-----cHHHHHHHHHh
Confidence 34568888888776522 2355688889988877665433 34456789999887653 222 23333333333
Q ss_pred -hcCCeEEEeccCc
Q 017293 279 -FHNILFYVAAPLT 291 (374)
Q Consensus 279 -~~~vPvyV~a~~~ 291 (374)
..++|+++++...
T Consensus 83 ~~~~~~ii~~s~~~ 96 (153)
T 3hv2_A 83 QYPSTTRILLTGDP 96 (153)
T ss_dssp HCTTSEEEEECCCC
T ss_pred HCCCCeEEEEECCC
Confidence 3579999987643
No 111
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=31.54 E-value=1.3e+02 Score=22.30 Aligned_cols=81 Identities=11% Similarity=-0.024 Sum_probs=46.1
Q ss_pred CeeEEEEecCCCCCcchHhHHHHHhhCCC-CeEEEcchHHH-HHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHH
Q 017293 201 VLERAYCSETRPFNQGSRLTAFELVHDRI-PATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAK 278 (374)
Q Consensus 201 ~~~~V~v~EsrP~~eG~~l~a~~L~~~GI-~vtlI~Dsav~-~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak 278 (374)
+..+|.++|..|.... .....|...|. .+....+..-+ ..+.+..+|.|++..+ +++. -|--.+..+-+
T Consensus 3 ~~~~ilivdd~~~~~~--~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~--l~~~-----~g~~l~~~l~~ 73 (128)
T 1jbe_A 3 KELKFLVVDDFSTMRR--IVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWN--MPNM-----DGLELLKTIRA 73 (128)
T ss_dssp TTCCEEEECSCHHHHH--HHHHHHHHTTCCCEEEESSHHHHHHHHTTCCCCEEEEESC--CSSS-----CHHHHHHHHHC
T ss_pred CccEEEEECCCHHHHH--HHHHHHHHcCCcEEEeeCCHHHHHHHHHhcCCCEEEEeCC--CCCC-----CHHHHHHHHHh
Confidence 4567888888775432 23456777888 56666654332 3344567899987543 3332 23323333332
Q ss_pred ---hcCCeEEEeccC
Q 017293 279 ---FHNILFYVAAPL 290 (374)
Q Consensus 279 ---~~~vPvyV~a~~ 290 (374)
...+|+++++..
T Consensus 74 ~~~~~~~~ii~~s~~ 88 (128)
T 1jbe_A 74 XXAMSALPVLMVTAE 88 (128)
T ss_dssp --CCTTCCEEEEESS
T ss_pred hcccCCCcEEEEecC
Confidence 136899988654
No 112
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}
Probab=31.46 E-value=99 Score=28.62 Aligned_cols=52 Identities=8% Similarity=0.027 Sum_probs=31.3
Q ss_pred CeeEEE-EecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCCCCEEEEcc
Q 017293 201 VLERAY-CSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGA 255 (374)
Q Consensus 201 ~~~~V~-v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~vd~VlvGA 255 (374)
..+++. |++..|.....++ +..+.+.|+++....| .-.++..+++|.|++..
T Consensus 23 ~~~~lvav~d~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~ll~~~~vD~V~I~t 75 (337)
T 3ip3_A 23 EECSITGIAPGVPEEDLSKL-EKAISEMNIKPKKYNN--WWEMLEKEKPDILVINT 75 (337)
T ss_dssp TTEEEEEEECSSTTCCCHHH-HHHHHTTTCCCEECSS--HHHHHHHHCCSEEEECS
T ss_pred CCcEEEEEecCCchhhHHHH-HHHHHHcCCCCcccCC--HHHHhcCCCCCEEEEeC
Confidence 344544 5666653323333 4445667887766666 44556557899999864
No 113
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=31.45 E-value=88 Score=34.45 Aligned_cols=62 Identities=16% Similarity=0.147 Sum_probs=44.8
Q ss_pred HHHHHhhCCCCeEEEcch-----HHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEe
Q 017293 220 TAFELVHDRIPATLIADS-----AAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (374)
Q Consensus 220 ~a~~L~~~GI~vtlI~Ds-----av~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~ 287 (374)
|++-|.+.||+|+.+.+- .+.-+|+++++|+||--.. |. -...-.+.+=..|-.++||++--
T Consensus 977 Ta~~l~~~gi~~~~v~~~~~g~p~i~d~~~~~~~~~~~~~~~-----~~-~~~~~~~~~r~~a~~~~~~~~t~ 1043 (1073)
T 1a9x_A 977 TAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTS-----GR-RAIEDSRVIRRSALQYKVHYDTT 1043 (1073)
T ss_dssp HHHHHHTTTCCCEECBCTTTCSSBHHHHHHHTCCSEEEECCC-----SH-HHHHHTHHHHHHHHHTTCEEESS
T ss_pred hHHHHHhCCceEEEEeecCCCCccHHHHHHcCCeEEEEECCC-----Cc-ccccchHHHHHHHHHhCCCEEcc
Confidence 567788999999999752 3566678899999985332 21 11335677778899999998853
No 114
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=31.41 E-value=26 Score=32.60 Aligned_cols=104 Identities=11% Similarity=0.045 Sum_probs=63.1
Q ss_pred cEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCCCC
Q 017293 170 FSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVS 249 (374)
Q Consensus 170 ~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~vd 249 (374)
|.++.+.+. ..+...++.|.+.|.+.-|++++.-|..+-.++ .....+.|+ .++-.++++.+- +...
T Consensus 72 Dv~ii~vp~--------~~~~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l-~~~A~~~gi--~viGPNc~Gii~--~~~~ 138 (294)
T 2yv1_A 72 NASVIFVPA--------PFAKDAVFEAIDAGIELIVVITEHIPVHDTMEF-VNYAEDVGV--KIIGPNTPGIAS--PKVG 138 (294)
T ss_dssp CEEEECCCH--------HHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHH-HHHHHHHTC--EEECSSCCEEEE--TTTE
T ss_pred CEEEEccCH--------HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH-HHHHHHcCC--EEEcCCCceeec--cCcc
Confidence 555555443 466778888888888766777776665443444 334555666 466555555433 3333
Q ss_pred EEEEcceeeecCCC--eecccccHHHHH--HHHhcCCeEEE
Q 017293 250 AVIVGADRVAANGD--TANKIGTYSLAL--CAKFHNILFYV 286 (374)
Q Consensus 250 ~VlvGAd~i~~nG~--v~nkiGT~~lA~--~Ak~~~vPvyV 286 (374)
+.......+..-|. ++.+.|++..++ .+...|+.|--
T Consensus 139 ~~~~~~~~~~~~G~va~vSqSG~l~~~~~~~~~~~g~G~s~ 179 (294)
T 2yv1_A 139 KLGIIPMEVLKEGSVGMVSRSGTLTYEIAHQIKKAGFGVST 179 (294)
T ss_dssp EEECCCGGGCCEEEEEEEESCSHHHHHHHHHHHHTTCCEEE
T ss_pred eeeecccCCCCCCCEEEEECCHHHHHHHHHHHHhCCCCeEE
Confidence 33222333344564 689999998877 56677888763
No 115
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=31.38 E-value=25 Score=27.57 Aligned_cols=82 Identities=6% Similarity=-0.030 Sum_probs=50.1
Q ss_pred CCeeEEEEecCCCCCcchHhHHHHHhhCC-CCeEEEcchHHH-HHH-hc-CCCCEEEEcceeeecCCCeecccccHHHHH
Q 017293 200 GVLERAYCSETRPFNQGSRLTAFELVHDR-IPATLIADSAAA-ALM-KD-GRVSAVIVGADRVAANGDTANKIGTYSLAL 275 (374)
Q Consensus 200 g~~~~V~v~EsrP~~eG~~l~a~~L~~~G-I~vtlI~Dsav~-~~m-~~-~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~ 275 (374)
....+|.++|..|.... .....|.+.| +.+....+..-+ ..+ +. ..+|.||+..+ +++ .-|--.+..
T Consensus 18 ~~~~~ilivdd~~~~~~--~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~--l~~-----~~g~~~~~~ 88 (146)
T 4dad_A 18 QGMINILVASEDASRLA--HLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGA--ALD-----TAELAAIEK 88 (146)
T ss_dssp GGGCEEEEECSCHHHHH--HHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTTCSEEEEECT--TCC-----HHHHHHHHH
T ss_pred CCCCeEEEEeCCHHHHH--HHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCCCCEEEEeCC--CCC-----ccHHHHHHH
Confidence 34678899888776532 2355688888 888887776522 223 33 78999988654 222 123333333
Q ss_pred HHH-hcCCeEEEeccC
Q 017293 276 CAK-FHNILFYVAAPL 290 (374)
Q Consensus 276 ~Ak-~~~vPvyV~a~~ 290 (374)
+-+ ..++|+++++..
T Consensus 89 l~~~~~~~~ii~lt~~ 104 (146)
T 4dad_A 89 LSRLHPGLTCLLVTTD 104 (146)
T ss_dssp HHHHCTTCEEEEEESC
T ss_pred HHHhCCCCcEEEEeCC
Confidence 333 347999998764
No 116
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=31.24 E-value=1e+02 Score=28.62 Aligned_cols=69 Identities=16% Similarity=0.111 Sum_probs=41.7
Q ss_pred ccccHHHHHHHHHHCCC-eeEEE-EecCCCCCcchHhHHHHHhhCCCCeEEEc---------chHHHHHHhcCCCCEEEE
Q 017293 185 GYGTALGVIRALHSEGV-LERAY-CSETRPFNQGSRLTAFELVHDRIPATLIA---------DSAAAALMKDGRVSAVIV 253 (374)
Q Consensus 185 g~~tv~~~l~~a~~~g~-~~~V~-v~EsrP~~eG~~l~a~~L~~~GI~vtlI~---------Dsav~~~m~~~~vd~Vlv 253 (374)
|.|+.+.-|..+++.|. ...|. |.=.+|...+ + | .+.|||+..++ |..+...+++.++|.+++
T Consensus 99 g~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~--~-A---~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivl 172 (286)
T 3n0v_A 99 KADHCLNDLLYRQRIGQLGMDVVAVVSNHPDLEP--L-A---HWHKIPYYHFALDPKDKPGQERKVLQVIEETGAELVIL 172 (286)
T ss_dssp SCCHHHHHHHHHHHTTSSCCEEEEEEESSSTTHH--H-H---HHTTCCEEECCCBTTBHHHHHHHHHHHHHHHTCSEEEE
T ss_pred CCCCCHHHHHHHHHCCCCCcEEEEEEeCcHHHHH--H-H---HHcCCCEEEeCCCcCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 45676766666666663 23333 2233555422 2 2 47899999986 345666777778999888
Q ss_pred cce-eee
Q 017293 254 GAD-RVA 259 (374)
Q Consensus 254 GAd-~i~ 259 (374)
..= +|+
T Consensus 173 a~y~~il 179 (286)
T 3n0v_A 173 ARYMQVL 179 (286)
T ss_dssp SSCCSCC
T ss_pred ccccccc
Confidence 654 344
No 117
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=31.10 E-value=1.7e+02 Score=26.49 Aligned_cols=96 Identities=11% Similarity=0.047 Sum_probs=57.6
Q ss_pred ccHHHHHHHHHH---CCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeE-EEcchHHH-HHHhcCCCCEEEEcceeeecC
Q 017293 187 GTALGVIRALHS---EGVLERAYCSETRPFNQGSRLTAFELVHDRIPAT-LIADSAAA-ALMKDGRVSAVIVGADRVAAN 261 (374)
Q Consensus 187 ~tv~~~l~~a~~---~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vt-lI~Dsav~-~~m~~~~vd~VlvGAd~i~~n 261 (374)
+|+..-+..+.+ .....+|.++|-.|.... ++...|.+.|+.|. ...|..-+ ..+++.++|.||+- -.+++
T Consensus 142 ~tVks~l~rA~~~Lr~~l~~rILvVdD~~~~~~--~l~~~L~~~g~~v~~~a~~g~eAl~~~~~~~~dlvl~D--~~MPd 217 (286)
T 3n0r_A 142 GEVERLIGDAQAEIDAELATEVLIIEDEPVIAA--DIEALVRELGHDVTDIAATRGEALEAVTRRTPGLVLAD--IQLAD 217 (286)
T ss_dssp HHHHHHHHHHHHHHHTSCCCEEEEECCSHHHHH--HHHHHHHHTTCEEEEEESSHHHHHHHHHHCCCSEEEEE--SCCTT
T ss_pred HHHHHHHHHHHhhhhccCCCcEEEEcCCHHHHH--HHHHHhhccCceEEEEeCCHHHHHHHHHhCCCCEEEEc--CCCCC
Confidence 455554544432 334567889998887643 34567889999998 77776443 23456789988874 34442
Q ss_pred CCeecccccHHHHHHHHhcCCeEEEeccC
Q 017293 262 GDTANKIGTYSLALCAKFHNILFYVAAPL 290 (374)
Q Consensus 262 G~v~nkiGT~~lA~~Ak~~~vPvyV~a~~ 290 (374)
| --|--.+..+=+..++|+++++..
T Consensus 218 ~----mdG~e~~~~ir~~~~~piI~lT~~ 242 (286)
T 3n0r_A 218 G----SSGIDAVKDILGRMDVPVIFITAF 242 (286)
T ss_dssp S----CCTTTTTHHHHHHTTCCEEEEESC
T ss_pred C----CCHHHHHHHHHhcCCCCEEEEeCC
Confidence 2 112222222222339999998763
No 118
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=30.91 E-value=1.3e+02 Score=25.00 Aligned_cols=32 Identities=6% Similarity=-0.092 Sum_probs=23.8
Q ss_pred HHHHhhCCCCeEEEcchHHHHHHhcCCCCEEEEc
Q 017293 221 AFELVHDRIPATLIADSAAAALMKDGRVSAVIVG 254 (374)
Q Consensus 221 a~~L~~~GI~vtlI~Dsav~~~m~~~~vd~VlvG 254 (374)
++.+++.|+++..|+++.-..+- +.+|.++.-
T Consensus 99 ~~~ak~~g~~vi~IT~~~~s~l~--~~ad~~l~~ 130 (186)
T 1m3s_A 99 AAKAKSLHGIVAALTINPESSIG--KQADLIIRM 130 (186)
T ss_dssp HHHHHHTTCEEEEEESCTTSHHH--HHCSEEEEC
T ss_pred HHHHHHCCCEEEEEECCCCCchH--HhCCEEEEe
Confidence 56678899999999997655555 567877643
No 119
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=30.66 E-value=1.4e+02 Score=27.21 Aligned_cols=88 Identities=10% Similarity=0.067 Sum_probs=44.5
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcc-----------hHHHHHHhcCCCCEEEEcceeeec
Q 017293 192 VIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIAD-----------SAAAALMKDGRVSAVIVGADRVAA 260 (374)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~D-----------sav~~~m~~~~vd~VlvGAd~i~~ 260 (374)
+++.+.+.| -+|++. .|.+.+.. ..+...|.++..++- ..+-..++++++..|++ ...-.+
T Consensus 101 ~~~~l~~~g--d~vl~~--~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i-~~p~np 172 (391)
T 3dzz_A 101 MVRQFTSPG--DQILVQ--EPVYNMFY---SVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVF-CNPHNP 172 (391)
T ss_dssp HHHHHSCTT--CEEEEC--SSCCHHHH---HHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEE-ESSBTT
T ss_pred HHHHhCCCC--CeEEEC--CCCcHHHH---HHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEE-ECCCCC
Confidence 444443333 345543 36665543 234556776665542 23444453345555544 222222
Q ss_pred CCCeecccccHHHHHHHHhcCCeEEEe
Q 017293 261 NGDTANKIGTYSLALCAKFHNILFYVA 287 (374)
Q Consensus 261 nG~v~nkiGT~~lA~~Ak~~~vPvyV~ 287 (374)
.|.+...----.++-+|+.||+++++=
T Consensus 173 tG~~~~~~~l~~i~~~~~~~~~~li~D 199 (391)
T 3dzz_A 173 IGYAWSEEEVKRIAELCAKHQVLLISD 199 (391)
T ss_dssp TTBCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCcccCHHHHHHHHHHHHHCCCEEEEe
Confidence 343333333345666799999998873
No 120
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=30.62 E-value=1.3e+02 Score=22.79 Aligned_cols=82 Identities=9% Similarity=-0.101 Sum_probs=49.4
Q ss_pred CeeEEEEecCCCCCcchHhHHHHHhh-CCCC-eEEEcchHH-HHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHH
Q 017293 201 VLERAYCSETRPFNQGSRLTAFELVH-DRIP-ATLIADSAA-AALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCA 277 (374)
Q Consensus 201 ~~~~V~v~EsrP~~eG~~l~a~~L~~-~GI~-vtlI~Dsav-~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~A 277 (374)
...+|.++|..|.... .....|.+ .|+. +....+..- -..+++...|.||+..+- .+ .-|--.+..+-
T Consensus 7 ~~~~iLivdd~~~~~~--~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l--~~-----~~g~~~~~~l~ 77 (143)
T 3cnb_A 7 NDFSILIIEDDKEFAD--MLTQFLENLFPYAKIKIAYNPFDAGDLLHTVKPDVVMLDLMM--VG-----MDGFSICHRIK 77 (143)
T ss_dssp --CEEEEECSCHHHHH--HHHHHHHHHCTTCEEEEECSHHHHHHHHHHTCCSEEEEETTC--TT-----SCHHHHHHHHH
T ss_pred CCceEEEEECCHHHHH--HHHHHHHhccCccEEEEECCHHHHHHHHHhcCCCEEEEeccc--CC-----CcHHHHHHHHH
Confidence 4568888888776532 23556787 8999 777666433 234456779999887643 22 12333333333
Q ss_pred H---hcCCeEEEeccCc
Q 017293 278 K---FHNILFYVAAPLT 291 (374)
Q Consensus 278 k---~~~vPvyV~a~~~ 291 (374)
+ ..++|+++++...
T Consensus 78 ~~~~~~~~~ii~~s~~~ 94 (143)
T 3cnb_A 78 STPATANIIVIAMTGAL 94 (143)
T ss_dssp TSTTTTTSEEEEEESSC
T ss_pred hCccccCCcEEEEeCCC
Confidence 3 3579999987643
No 121
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=30.59 E-value=1.5e+02 Score=28.75 Aligned_cols=71 Identities=18% Similarity=0.226 Sum_probs=41.4
Q ss_pred CcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCC-
Q 017293 169 KFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGR- 247 (374)
Q Consensus 169 ~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~- 247 (374)
+..|+..+-.+ +|. +.-+.++++| .+|.+.|.++..+.. . ...|.+.||++.+=.+.. .++ ..
T Consensus 9 ~k~v~viG~G~------sG~--s~A~~l~~~G--~~V~~~D~~~~~~~~-~-~~~L~~~gi~~~~g~~~~--~~~--~~~ 72 (451)
T 3lk7_A 9 NKKVLVLGLAR------SGE--AAARLLAKLG--AIVTVNDGKPFDENP-T-AQSLLEEGIKVVCGSHPL--ELL--DED 72 (451)
T ss_dssp TCEEEEECCTT------THH--HHHHHHHHTT--CEEEEEESSCGGGCH-H-HHHHHHTTCEEEESCCCG--GGG--GSC
T ss_pred CCEEEEEeeCH------HHH--HHHHHHHhCC--CEEEEEeCCcccCCh-H-HHHHHhCCCEEEECCChH--Hhh--cCC
Confidence 45677776432 122 2234555656 678888988754332 2 347999999887544422 233 34
Q ss_pred CCEEEEcc
Q 017293 248 VSAVIVGA 255 (374)
Q Consensus 248 vd~VlvGA 255 (374)
+|.||++.
T Consensus 73 ~d~vv~sp 80 (451)
T 3lk7_A 73 FCYMIKNP 80 (451)
T ss_dssp EEEEEECT
T ss_pred CCEEEECC
Confidence 78876654
No 122
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=30.56 E-value=71 Score=29.62 Aligned_cols=96 Identities=11% Similarity=0.083 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHC--CCeeEEEEecC------CCCCcchHhHH
Q 017293 150 NKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSE--GVLERAYCSET------RPFNQGSRLTA 221 (374)
Q Consensus 150 ~~~I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~--g~~~~V~v~Es------rP~~eG~~l~a 221 (374)
.+.|++.++++|.+.+. ++++|.. +. | +|...+.+..... .++++|+-..+ .|......+ +
T Consensus 92 k~~ia~~AA~~l~~~i~-~~~~igl-~~-G-------sT~~~~~~~L~~~~~~~~~~vv~l~ggl~~~~~~~~~~~~i-~ 160 (315)
T 2w48_A 92 LSAMGQHGALLVDRLLE-PGDIIGF-SW-G-------RAVRSLVENLPQRSQSRQVICVPIIGGPSGKLESRYHVNTL-T 160 (315)
T ss_dssp HHHHHHHHHHHHHHHCC-TTCEEEE-CC-S-------HHHHHHHTTSCCCSSCCCCEEEESBCBCTTSSCGGGCHHHH-H
T ss_pred HHHHHHHHHHHHHHhCC-CCCEEEE-CC-h-------HHHHHHHHhhccccCCCCcEEEEcCCCCCCCCccccCHHHH-H
Confidence 46688888888655443 5666543 22 2 4667666655332 24677776632 222222233 5
Q ss_pred HHHhhC-CCCeEEE--c----chHHHHHHhc-----------CCCCEEEEcce
Q 017293 222 FELVHD-RIPATLI--A----DSAAAALMKD-----------GRVSAVIVGAD 256 (374)
Q Consensus 222 ~~L~~~-GI~vtlI--~----Dsav~~~m~~-----------~~vd~VlvGAd 256 (374)
..|.+. |+++..+ | +......+.+ +++|+.|+|.-
T Consensus 161 ~~la~~~~~~~~~l~~P~~~~~~~~~~~l~~~~~~~~~l~~~~~~DiailGIG 213 (315)
T 2w48_A 161 YGAAARLKAESHLADFPALLDNPLIRNGIMQSQHFKTISSYWDSLDVALVGIG 213 (315)
T ss_dssp HHHHHHTTCEECCCCSBSBCSSHHHHHHHHHSHHHHHHHHHHTTCSEEEECCB
T ss_pred HHHHHHHCCceeEeeCCcccCCHHHHHHHHhChHHHHHHHHHhcCCEEEEccC
Confidence 566653 7665433 2 2222222222 68999999998
No 123
>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*
Probab=30.07 E-value=2.2e+02 Score=27.99 Aligned_cols=97 Identities=20% Similarity=0.157 Sum_probs=56.3
Q ss_pred HHHHHHHCCCeeEEEEecCCC-CCcchHhHHHHHhhCCCCeEEEc-c----hHHHHHHhc----CCCCEEEEcceeeecC
Q 017293 192 VIRALHSEGVLERAYCSETRP-FNQGSRLTAFELVHDRIPATLIA-D----SAAAALMKD----GRVSAVIVGADRVAAN 261 (374)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP-~~eG~~l~a~~L~~~GI~vtlI~-D----sav~~~m~~----~~vd~VlvGAd~i~~n 261 (374)
+.+.+.++|.. +|+++--++ ..++.+-...+|.+.|..++++. | .++..++.. +.+|.||-.|- +..+
T Consensus 242 la~~La~~G~~-~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~i~~~g~ld~VIh~AG-~~~~ 319 (486)
T 2fr1_A 242 IARWLARRGAP-HLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIGDDVPLSAVFHAAA-TLDD 319 (486)
T ss_dssp HHHHHHHHTCS-EEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCTTSCEEEEEECCC-CCCC
T ss_pred HHHHHHHcCCC-EEEEEcCCCCCcHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHHHHHhcCCCcEEEECCc-cCCC
Confidence 44555555643 344443332 22232223457888888877663 3 345556632 24587776663 3344
Q ss_pred CCe-------------ecccccHHHHHHHHhcCCeEEEeccC
Q 017293 262 GDT-------------ANKIGTYSLALCAKFHNILFYVAAPL 290 (374)
Q Consensus 262 G~v-------------~nkiGT~~lA~~Ak~~~vPvyV~a~~ 290 (374)
|.+ .|-.|+..+.-+++..+..++|...|
T Consensus 320 ~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~V~~SS 361 (486)
T 2fr1_A 320 GTVDTLTGERIERASRAKVLGARNLHELTRELDLTAFVLFSS 361 (486)
T ss_dssp CCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCSEEEEEEE
T ss_pred CccccCCHHHHHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcC
Confidence 432 26678888888888888888887655
No 124
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=30.05 E-value=2e+02 Score=26.49 Aligned_cols=55 Identities=16% Similarity=-0.025 Sum_probs=32.4
Q ss_pred CcEEEEecCCCcccccccc-cHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcc
Q 017293 169 KFSVLTHCNTGSLATAGYG-TALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIAD 236 (374)
Q Consensus 169 ~~~ILT~~~sg~lat~g~~-tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~D 236 (374)
...||..+..+ .|.- .++.+.+.+.+.|....|+..+ . + ...+...|+++..++.
T Consensus 20 ~MrIl~~~~~~----~Gh~~~~~~la~~L~~~GheV~v~~~~---~-----~-~~~~~~~g~~~~~~~~ 75 (412)
T 3otg_A 20 HMRVLFASLGT----HGHTYPLLPLATAARAAGHEVTFATGE---G-----F-AGTLRKLGFEPVATGM 75 (412)
T ss_dssp SCEEEEECCSS----HHHHGGGHHHHHHHHHTTCEEEEEECG---G-----G-HHHHHHTTCEEEECCC
T ss_pred eeEEEEEcCCC----cccHHHHHHHHHHHHHCCCEEEEEccH---H-----H-HHHHHhcCCceeecCc
Confidence 36777665331 1221 2345566777778777776543 1 2 3356778999888874
No 125
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=29.85 E-value=1.3e+02 Score=24.69 Aligned_cols=32 Identities=9% Similarity=-0.130 Sum_probs=24.3
Q ss_pred HHHHhhCCCCeEEEcchHHHHHHhcCCCCEEEEcc
Q 017293 221 AFELVHDRIPATLIADSAAAALMKDGRVSAVIVGA 255 (374)
Q Consensus 221 a~~L~~~GI~vtlI~Dsav~~~m~~~~vd~VlvGA 255 (374)
++.+++.|+++..|+++.-. +- ..+|.++.-.
T Consensus 102 ~~~ak~~g~~vi~IT~~~~s-l~--~~ad~~l~~~ 133 (180)
T 1jeo_A 102 AKKAKNINNNIIAIVCECGN-VV--EFADLTIPLE 133 (180)
T ss_dssp HHHHHTTCSCEEEEESSCCG-GG--GGCSEEEECC
T ss_pred HHHHHHCCCcEEEEeCCCCh-HH--HhCCEEEEeC
Confidence 55677899999999997655 54 6788877544
No 126
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=29.83 E-value=1.2e+02 Score=22.34 Aligned_cols=78 Identities=10% Similarity=0.024 Sum_probs=45.1
Q ss_pred EEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHH-HHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHH-HhcC
Q 017293 204 RAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCA-KFHN 281 (374)
Q Consensus 204 ~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~-~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~A-k~~~ 281 (374)
+|.+.|..|.... .....|...|..+....+..-+ ..+++...|.+++..+ ++++ -|--.+..+- +..+
T Consensus 2 ~ilivdd~~~~~~--~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~dlil~D~~--l~~~-----~g~~~~~~l~~~~~~ 72 (121)
T 2pl1_A 2 RVLVVEDNALLRH--HLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLG--LPDE-----DGLSLIRRWRSNDVS 72 (121)
T ss_dssp EEEEECSCHHHHH--HHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSC--CSSS-----CHHHHHHHHHHTTCC
T ss_pred eEEEEeCcHHHHH--HHHHHHhhcCCEEEEeCCHHHHHHHHhccCCCEEEEecC--CCCC-----CHHHHHHHHHhcCCC
Confidence 5677777664421 2245677889888877765433 3345567899988654 3322 1322222222 2357
Q ss_pred CeEEEeccC
Q 017293 282 ILFYVAAPL 290 (374)
Q Consensus 282 vPvyV~a~~ 290 (374)
+|+++++..
T Consensus 73 ~~ii~~s~~ 81 (121)
T 2pl1_A 73 LPILVLTAR 81 (121)
T ss_dssp SCEEEEESC
T ss_pred CCEEEEecC
Confidence 899988653
No 127
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2
Probab=29.82 E-value=2.9e+02 Score=24.37 Aligned_cols=103 Identities=16% Similarity=0.085 Sum_probs=56.6
Q ss_pred cEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCC---cchHhHHHHHhhCCCCeEEE--cc-hHHHHHH
Q 017293 170 FSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFN---QGSRLTAFELVHDRIPATLI--AD-SAAAALM 243 (374)
Q Consensus 170 ~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~---eG~~l~a~~L~~~GI~vtlI--~D-sav~~~m 243 (374)
.+||..+-+|.+ | ..+++.+.++|. +|+++--++.. +..+. ..+|...|+.+... .| .++..++
T Consensus 5 ~~ilVtGatG~i-----G--~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~~~-~~~~~~~~~~~~~~D~~d~~~l~~~~ 74 (313)
T 1qyd_A 5 SRVLIVGGTGYI-----G--KRIVNASISLGH--PTYVLFRPEVVSNIDKVQM-LLYFKQLGAKLIEASLDDHQRLVDAL 74 (313)
T ss_dssp CCEEEESTTSTT-----H--HHHHHHHHHTTC--CEEEECCSCCSSCHHHHHH-HHHHHTTTCEEECCCSSCHHHHHHHH
T ss_pred CEEEEEcCCcHH-----H--HHHHHHHHhCCC--cEEEEECCCcccchhHHHH-HHHHHhCCeEEEeCCCCCHHHHHHHH
Confidence 346666655533 2 234455556664 55555433321 11111 12355567654321 23 3456667
Q ss_pred hcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcC-CeEEEe
Q 017293 244 KDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHN-ILFYVA 287 (374)
Q Consensus 244 ~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~-vPvyV~ 287 (374)
.++|.|+--|-... . -.|-.|+..++-+|+..+ ++-+|.
T Consensus 75 --~~~d~vi~~a~~~~-~--~~~~~~~~~l~~aa~~~g~v~~~v~ 114 (313)
T 1qyd_A 75 --KQVDVVISALAGGV-L--SHHILEQLKLVEAIKEAGNIKRFLP 114 (313)
T ss_dssp --TTCSEEEECCCCSS-S--STTTTTHHHHHHHHHHSCCCSEEEC
T ss_pred --hCCCEEEECCcccc-c--hhhHHHHHHHHHHHHhcCCCceEEe
Confidence 67887776553221 1 127788999999999998 887774
No 128
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=29.57 E-value=1.7e+02 Score=23.88 Aligned_cols=103 Identities=15% Similarity=0.031 Sum_probs=57.4
Q ss_pred CCcEEEEecCCCccc--ccccccHHHHHHHHH--HCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEE----EcchHH
Q 017293 168 SKFSVLTHCNTGSLA--TAGYGTALGVIRALH--SEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATL----IADSAA 239 (374)
Q Consensus 168 ~~~~ILT~~~sg~la--t~g~~tv~~~l~~a~--~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtl----I~Dsav 239 (374)
++.+|+..++ +- --|...++..+.... +++.++++++.-..|.....++ .....+.| .+++ ++..-+
T Consensus 35 ~~~~i~~~G~---~~~~~K~~~~li~a~~~l~~~~~~~~~~l~i~G~~~~~~~~~l-~~~~~~~~-~v~~~~g~~~~~~~ 109 (200)
T 2bfw_A 35 EGVTFMFIGR---FDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWA-RSLEEKHG-NVKVITEMLSREFV 109 (200)
T ss_dssp SCEEEEEESC---BCSSSSCHHHHHHHHHHHTTSGGGGGEEEEEECCBCHHHHHHH-HHHHHHCT-TEEEECSCCCHHHH
T ss_pred CCCEEEEeec---cccccCCHHHHHHHHHHHHhhccCCCeEEEEECCCChHHHHHH-HHHHHhcC-CEEEEeccCCHHHH
Confidence 3456666543 21 112233444555554 4456788877765441011222 22345566 7777 455577
Q ss_pred HHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEe
Q 017293 240 AALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (374)
Q Consensus 240 ~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~ 287 (374)
..+| ..+|.+++.... .| .| ...+=|-.+|+||++.
T Consensus 110 ~~~~--~~ad~~l~ps~~---e~-----~~--~~~~Ea~a~G~PvI~~ 145 (200)
T 2bfw_A 110 RELY--GSVDFVIIPSYF---EP-----FG--LVALEAMCLGAIPIAS 145 (200)
T ss_dssp HHHH--TTCSEEEECCSC---CS-----SC--HHHHHHHHTTCEEEEE
T ss_pred HHHH--HHCCEEEECCCC---CC-----cc--HHHHHHHHCCCCEEEe
Confidence 8888 899999875432 22 12 3345567789998874
No 129
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=29.50 E-value=1.6e+02 Score=21.84 Aligned_cols=79 Identities=15% Similarity=0.053 Sum_probs=45.2
Q ss_pred eEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHH-HHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHh-c
Q 017293 203 ERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKF-H 280 (374)
Q Consensus 203 ~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~-~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~-~ 280 (374)
.+|.+.|..|.... .....|...|..+....+..-+ ..+.+...|.|++..+ +++. -|.-.+..+.+. .
T Consensus 4 ~~ilivdd~~~~~~--~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~D~~--l~~~-----~g~~~~~~l~~~~~ 74 (126)
T 1dbw_A 4 YTVHIVDDEEPVRK--SLAFMLTMNGFAVKMHQSAEAFLAFAPDVRNGVLVTDLR--MPDM-----SGVELLRNLGDLKI 74 (126)
T ss_dssp CEEEEEESSHHHHH--HHHHHHHHTTCEEEEESCHHHHHHHGGGCCSEEEEEECC--STTS-----CHHHHHHHHHHTTC
T ss_pred CEEEEEcCCHHHHH--HHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCCEEEEECC--CCCC-----CHHHHHHHHHhcCC
Confidence 46777777665421 2244577788888766654332 2344567888887543 2322 243333334333 4
Q ss_pred CCeEEEeccC
Q 017293 281 NILFYVAAPL 290 (374)
Q Consensus 281 ~vPvyV~a~~ 290 (374)
++|+++++..
T Consensus 75 ~~~ii~~s~~ 84 (126)
T 1dbw_A 75 NIPSIVITGH 84 (126)
T ss_dssp CCCEEEEECT
T ss_pred CCCEEEEECC
Confidence 7899998654
No 130
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=29.38 E-value=1.7e+02 Score=21.87 Aligned_cols=54 Identities=7% Similarity=-0.014 Sum_probs=35.8
Q ss_pred CeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHH-HHHhcCCCCEEEEcce
Q 017293 201 VLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGAD 256 (374)
Q Consensus 201 ~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~-~~m~~~~vd~VlvGAd 256 (374)
...+|.++|..|.... .....|.+.|..|....+..-+ ..+++.+.|.||+..+
T Consensus 5 ~~~~ilivdd~~~~~~--~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~ 59 (132)
T 3lte_A 5 QSKRILVVDDDQAMAA--AIERVLKRDHWQVEIAHNGFDAGIKLSTFEPAIMTLDLS 59 (132)
T ss_dssp --CEEEEECSCHHHHH--HHHHHHHHTTCEEEEESSHHHHHHHHHHTCCSEEEEESC
T ss_pred CCccEEEEECCHHHHH--HHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEEecC
Confidence 3467888888776532 2355688889988877665443 3345678999988664
No 131
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=29.21 E-value=1.4e+02 Score=25.17 Aligned_cols=81 Identities=6% Similarity=-0.020 Sum_probs=49.4
Q ss_pred CeeEEEEecCCCCCcchHhHHHHHhhCCC-CeEEEcchHHHHH-Hhc-------------CCCCEEEEcceeeecCCCee
Q 017293 201 VLERAYCSETRPFNQGSRLTAFELVHDRI-PATLIADSAAAAL-MKD-------------GRVSAVIVGADRVAANGDTA 265 (374)
Q Consensus 201 ~~~~V~v~EsrP~~eG~~l~a~~L~~~GI-~vtlI~Dsav~~~-m~~-------------~~vd~VlvGAd~i~~nG~v~ 265 (374)
...+|.++|..|... .++...|.+.|+ .|....+..-+.- +++ ..+|.||+... +++
T Consensus 60 ~~~~ILiVdDd~~~~--~~l~~~L~~~g~~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~--lp~---- 131 (206)
T 3mm4_A 60 RGKRVLVVDDNFISR--KVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQ--MPE---- 131 (206)
T ss_dssp TTCEEEEECSCHHHH--HHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESC--CSS----
T ss_pred CCCEEEEEeCCHHHH--HHHHHHHHHcCCCeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCC--CCC----
Confidence 356888888877653 234567888998 6777766544332 222 27999988653 333
Q ss_pred cccccHHHHHHHHh-----cCCeEEEeccC
Q 017293 266 NKIGTYSLALCAKF-----HNILFYVAAPL 290 (374)
Q Consensus 266 nkiGT~~lA~~Ak~-----~~vPvyV~a~~ 290 (374)
.-|--.+..+-+. ..+|+++++..
T Consensus 132 -~~G~el~~~lr~~~~~~~~~~piI~ls~~ 160 (206)
T 3mm4_A 132 -MDGYEATREIRKVEKSYGVRTPIIAVSGH 160 (206)
T ss_dssp -SCHHHHHHHHHHHHHTTTCCCCEEEEESS
T ss_pred -CCHHHHHHHHHhhhhhcCCCCcEEEEECC
Confidence 2244444444432 57999998764
No 132
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=29.17 E-value=1.5e+02 Score=21.86 Aligned_cols=78 Identities=9% Similarity=0.055 Sum_probs=44.2
Q ss_pred EEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHH-HHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHh---
Q 017293 204 RAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKF--- 279 (374)
Q Consensus 204 ~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~-~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~--- 279 (374)
+|.++|..|.... .....|...|+.+....+..-+ ..+++...|.|++..+ +++. -|.-.+..+-+.
T Consensus 3 ~ilivdd~~~~~~--~l~~~L~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~--l~~~-----~g~~~~~~l~~~~~~ 73 (124)
T 1mb3_A 3 KVLIVEDNELNMK--LFHDLLEAQGYETLQTREGLSALSIARENKPDLILMDIQ--LPEI-----SGLEVTKWLKEDDDL 73 (124)
T ss_dssp EEEEECSCHHHHH--HHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEESB--CSSS-----BHHHHHHHHHHSTTT
T ss_pred EEEEEcCCHHHHH--HHHHHHHHcCcEEEEeCCHHHHHHHHhcCCCCEEEEeCC--CCCC-----CHHHHHHHHHcCccc
Confidence 5777777765422 2345677888888766654332 2344567899988653 2322 233333333332
Q ss_pred cCCeEEEeccC
Q 017293 280 HNILFYVAAPL 290 (374)
Q Consensus 280 ~~vPvyV~a~~ 290 (374)
.++|+++++..
T Consensus 74 ~~~~ii~~s~~ 84 (124)
T 1mb3_A 74 AHIPVVAVTAF 84 (124)
T ss_dssp TTSCEEEEC--
T ss_pred cCCcEEEEECC
Confidence 36899998654
No 133
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=29.15 E-value=2.6e+02 Score=26.28 Aligned_cols=76 Identities=14% Similarity=0.073 Sum_probs=40.7
Q ss_pred eEEEEecCCCCCcchHhHHHH-HhhCCCCeEEEcch--HHHHHHhcCCCCEEEEcceeee-cCCCeecccccHHHHHHHH
Q 017293 203 ERAYCSETRPFNQGSRLTAFE-LVHDRIPATLIADS--AAAALMKDGRVSAVIVGADRVA-ANGDTANKIGTYSLALCAK 278 (374)
Q Consensus 203 ~~V~v~EsrP~~eG~~l~a~~-L~~~GI~vtlI~Ds--av~~~m~~~~vd~VlvGAd~i~-~nG~v~nkiGT~~lA~~Ak 278 (374)
-+|++.+ |.+.+....... +...|+++..++-. .+-..+ ++++..|++ +.+. +.|.+.. --.++-+|+
T Consensus 96 d~vi~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~i-~~~~~~v~~--~~~~n~~G~~~~---l~~i~~l~~ 167 (412)
T 2cb1_A 96 DEVVAAK--GLFGQTIGLFGQVLSLMGVTVRYVDPEPEAVREAL-SAKTRAVFV--ETVANPALLVPD---LEALATLAE 167 (412)
T ss_dssp CEEEEET--TCCHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHC-CTTEEEEEE--ESSCTTTCCCCC---HHHHHHHHH
T ss_pred CEEEEeC--CCchhHHHHHHHHHHHcCCEEEEECCCHHHHHHHh-ccCCeEEEE--eCCCCCCccccc---HHHHHHHHH
Confidence 3666654 555442211112 45679998888632 222333 134444443 2222 2344332 346778899
Q ss_pred hcCCeEEE
Q 017293 279 FHNILFYV 286 (374)
Q Consensus 279 ~~~vPvyV 286 (374)
+||+++++
T Consensus 168 ~~~~~li~ 175 (412)
T 2cb1_A 168 EAGVALVV 175 (412)
T ss_dssp HHTCEEEE
T ss_pred HcCCEEEE
Confidence 99999887
No 134
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=29.13 E-value=98 Score=28.79 Aligned_cols=69 Identities=12% Similarity=0.058 Sum_probs=41.2
Q ss_pred ccccHHHHHHHHHHCCC-eeEEE-EecCCCCCcchHhHHHHHhhCCCCeEEEc---------chHHHHHHhcCCCCEEEE
Q 017293 185 GYGTALGVIRALHSEGV-LERAY-CSETRPFNQGSRLTAFELVHDRIPATLIA---------DSAAAALMKDGRVSAVIV 253 (374)
Q Consensus 185 g~~tv~~~l~~a~~~g~-~~~V~-v~EsrP~~eG~~l~a~~L~~~GI~vtlI~---------Dsav~~~m~~~~vd~Vlv 253 (374)
|.|+.+.-|..+++.|. ..+|. |.=.+|...+ + -.+.|||+..++ |..+...+++.++|.+++
T Consensus 104 g~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~--~----A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivl 177 (292)
T 3lou_A 104 KLEHCLADLLFRWKMGELKMDIVGIVSNHPDFAP--L----AAQHGLPFRHFPITADTKAQQEAQWLDVFETSGAELVIL 177 (292)
T ss_dssp SCCHHHHHHHHHHHHTSSCCEEEEEEESSSTTHH--H----HHHTTCCEEECCCCSSCHHHHHHHHHHHHHHHTCSEEEE
T ss_pred CCCcCHHHHHHHHHcCCCCcEEEEEEeCcHHHHH--H----HHHcCCCEEEeCCCcCCHHHHHHHHHHHHHHhCCCEEEe
Confidence 44666665555555553 23332 3334554422 2 246899999987 345666777779999988
Q ss_pred cce-eee
Q 017293 254 GAD-RVA 259 (374)
Q Consensus 254 GAd-~i~ 259 (374)
..= +|+
T Consensus 178 a~y~~il 184 (292)
T 3lou_A 178 ARYMQVL 184 (292)
T ss_dssp SSCCSCC
T ss_pred cCchhhC
Confidence 654 444
No 135
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2
Probab=29.02 E-value=1.6e+02 Score=26.16 Aligned_cols=99 Identities=13% Similarity=0.065 Sum_probs=54.1
Q ss_pred cEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCC----cchHhHHHHHhhCCCCeEEE--cc-hHHHHH
Q 017293 170 FSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFN----QGSRLTAFELVHDRIPATLI--AD-SAAAAL 242 (374)
Q Consensus 170 ~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~----eG~~l~a~~L~~~GI~vtlI--~D-sav~~~ 242 (374)
.+||..+-+|.+ | ..+++.+.++|. +|+++--++.. +..+. ..+|...|+.+... .| .++..+
T Consensus 5 ~~ilVtGatG~i-----G--~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~~~~-~~~l~~~~v~~v~~D~~d~~~l~~~ 74 (308)
T 1qyc_A 5 SRILLIGATGYI-----G--RHVAKASLDLGH--PTFLLVRESTASSNSEKAQL-LESFKASGANIVHGSIDDHASLVEA 74 (308)
T ss_dssp CCEEEESTTSTT-----H--HHHHHHHHHTTC--CEEEECCCCCTTTTHHHHHH-HHHHHTTTCEEECCCTTCHHHHHHH
T ss_pred CEEEEEcCCcHH-----H--HHHHHHHHhCCC--CEEEEECCcccccCHHHHHH-HHHHHhCCCEEEEeccCCHHHHHHH
Confidence 346666655533 2 234455566674 55555433321 11111 13455667654322 12 345566
Q ss_pred HhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcC-CeEEEe
Q 017293 243 MKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHN-ILFYVA 287 (374)
Q Consensus 243 m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~-vPvyV~ 287 (374)
+ .++|.||.-| +..+-.|+..++-+|+..+ ++-+|.
T Consensus 75 ~--~~~d~vi~~a-------~~~~~~~~~~l~~aa~~~g~v~~~v~ 111 (308)
T 1qyc_A 75 V--KNVDVVISTV-------GSLQIESQVNIIKAIKEVGTVKRFFP 111 (308)
T ss_dssp H--HTCSEEEECC-------CGGGSGGGHHHHHHHHHHCCCSEEEC
T ss_pred H--cCCCEEEECC-------cchhhhhHHHHHHHHHhcCCCceEee
Confidence 6 5677665544 3334568888888999988 887774
No 136
>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; HET: COA; 2.40A {Shewanella oneidensis}
Probab=28.65 E-value=1.3e+02 Score=29.55 Aligned_cols=95 Identities=17% Similarity=0.128 Sum_probs=55.4
Q ss_pred HHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCC---CeeEEEEec--C---------------CCCCc
Q 017293 156 YGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEG---VLERAYCSE--T---------------RPFNQ 215 (374)
Q Consensus 156 ~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g---~~~~V~v~E--s---------------rP~~e 215 (374)
.++++|+ +|++|...+.+ +....+++...+++ ++++++..- . +|++-
T Consensus 11 eAv~~Ik-----dG~tI~~ggf~--------g~P~~Li~AL~~r~~~~kdLtl~~~~s~g~~~~~~~~l~~~i~~~~~~~ 77 (436)
T 2oas_A 11 EAVSLIR-----SGETLWTHSMG--------ATPKVLLDALAKHALTLDNITLLQLHTEGAESLSHPSLLGHLRHRCFFG 77 (436)
T ss_dssp HHHTTCC-----TTCEEEECCBT--------TCCHHHHHHHHHHGGGCCSEEEEESSBSSCGGGGSGGGTTTEEEEESSC
T ss_pred HHHhhCC-----CCCEEEECCcc--------CcHHHHHHHHHHhhccCCCEEEEEecccCChhhhHHHhcCcEEEeecCC
Confidence 4556677 89999887654 23344444444332 678887531 1 12222
Q ss_pred chHhHHHHHhhCC-CCeEEEcchHHHHHHhc--CCCCEEEEcceeeecCCCee
Q 017293 216 GSRLTAFELVHDR-IPATLIADSAAAALMKD--GRVSAVIVGADRVAANGDTA 265 (374)
Q Consensus 216 G~~l~a~~L~~~G-I~vtlI~Dsav~~~m~~--~~vd~VlvGAd~i~~nG~v~ 265 (374)
|..+ . ++.+.| ++.+-+--+.+..++.. -++|..++.|...-++|.+.
T Consensus 78 ~~~l-r-~~i~~G~~~y~P~~ls~~~~~l~~~~l~~DVAlI~as~aD~~Gn~s 128 (436)
T 2oas_A 78 GVPT-R-PLLQSGDADYVPIFLSEVPKLFRSGEQKIDTAIIQVSPPDKHGMCS 128 (436)
T ss_dssp CTTT-H-HHHHTTSSEECCCCGGGHHHHHHTTSSCCSEEEEEECCCCTTCEEE
T ss_pred CHHH-H-HHHHcCCCeeeCCccccHHHHHHcCCCCCCEEEEEeccCCCCceEE
Confidence 2222 3 344444 44444445556655543 46899999999998899765
No 137
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=28.56 E-value=1.6e+02 Score=26.12 Aligned_cols=68 Identities=18% Similarity=0.155 Sum_probs=39.3
Q ss_pred ccH-HHHHHHHHHCCC--eeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEc----------chHHHHHHhcCCCCEEEE
Q 017293 187 GTA-LGVIRALHSEGV--LERAYCSETRPFNQGSRLTAFELVHDRIPATLIA----------DSAAAALMKDGRVSAVIV 253 (374)
Q Consensus 187 ~tv-~~~l~~a~~~g~--~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~----------Dsav~~~m~~~~vd~Vlv 253 (374)
++. ..+|....+... .+..+++ .+|...+.+ ...+.|||+..+. |..+-..++..++|.+++
T Consensus 33 g~~~~~~l~~l~~~~~~~~I~~Vvt-~~~~~~~~~----~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~ 107 (229)
T 3auf_A 33 GTNLQAILDGCREGRIPGRVAVVIS-DRADAYGLE----RARRAGVDALHMDPAAYPSRTAFDAALAERLQAYGVDLVCL 107 (229)
T ss_dssp CHHHHHHHHHHHTTSSSEEEEEEEE-SSTTCHHHH----HHHHTTCEEEECCGGGSSSHHHHHHHHHHHHHHTTCSEEEE
T ss_pred cHHHHHHHHHHHhCCCCCeEEEEEc-CCCchHHHH----HHHHcCCCEEEECcccccchhhccHHHHHHHHhcCCCEEEE
Confidence 444 445555444322 3333444 345554433 2457899998764 345566677789999888
Q ss_pred cce-eee
Q 017293 254 GAD-RVA 259 (374)
Q Consensus 254 GAd-~i~ 259 (374)
.+= +|+
T Consensus 108 agy~~IL 114 (229)
T 3auf_A 108 AGYMRLV 114 (229)
T ss_dssp SSCCSCC
T ss_pred cChhHhC
Confidence 654 444
No 138
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=28.53 E-value=62 Score=24.72 Aligned_cols=86 Identities=7% Similarity=0.111 Sum_probs=47.1
Q ss_pred eeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHH-HHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHH-h
Q 017293 202 LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAA-AALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAK-F 279 (374)
Q Consensus 202 ~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav-~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak-~ 279 (374)
..+|.++|..|.... .....|.+.|+.|....+..- -..+++...|.||+..+- ..+..-..-|--.+..+-+ .
T Consensus 3 ~~~ilivdd~~~~~~--~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~~--~~~~~~~~~g~~~~~~l~~~~ 78 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLT--AVQLLLKNHFSKVITLSSPVSLSTVLREENPEVVLLDMNF--TSGINNGNEGLFWLHEIKRQY 78 (140)
T ss_dssp CCEEEEECSCHHHHH--HHHHHHTTTSSEEEEECCHHHHHHHHHHSCEEEEEEETTT--TC-----CCHHHHHHHHHHHC
T ss_pred CceEEEEeCCHHHHH--HHHHHHHhCCcEEEEeCCHHHHHHHHHcCCCCEEEEeCCc--CCCCCCCccHHHHHHHHHhhC
Confidence 357788887765422 235567888888886665432 233455678988886542 1000001123333333333 3
Q ss_pred cCCeEEEeccCc
Q 017293 280 HNILFYVAAPLT 291 (374)
Q Consensus 280 ~~vPvyV~a~~~ 291 (374)
.++|+++++...
T Consensus 79 ~~~~ii~ls~~~ 90 (140)
T 2qr3_A 79 RDLPVVLFTAYA 90 (140)
T ss_dssp TTCCEEEEEEGG
T ss_pred cCCCEEEEECCC
Confidence 479999987643
No 139
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=28.52 E-value=1.2e+02 Score=25.71 Aligned_cols=81 Identities=16% Similarity=0.079 Sum_probs=50.2
Q ss_pred eeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHH-HHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhc
Q 017293 202 LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFH 280 (374)
Q Consensus 202 ~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~-~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~ 280 (374)
..+|.++|..|.... .....|...|+.|....+..-+ ..+++...|.||+..+ +++. -|--.+..+-+..
T Consensus 4 ~~~ilivdd~~~~~~--~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~--l~~~-----~g~~~~~~l~~~~ 74 (230)
T 2oqr_A 4 ATSVLIVEDEESLAD--PLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLM--LPGM-----SGTDVCKQLRARS 74 (230)
T ss_dssp CCEEEEECSCHHHHH--HHHHHHHHTTCEEEEECSHHHHHHHHHHHCCSEEEEESS--CSSS-----CHHHHHHHHHHHC
T ss_pred CCeEEEEeCCHHHHH--HHHHHHHHCCCEEEEECCHHHHHHHHhccCCCEEEEECC--CCCC-----CHHHHHHHHHcCC
Confidence 357888888776532 2245677889988876654333 2334567899988654 2322 2444444444456
Q ss_pred CCeEEEeccCc
Q 017293 281 NILFYVAAPLT 291 (374)
Q Consensus 281 ~vPvyV~a~~~ 291 (374)
++|+++++...
T Consensus 75 ~~~ii~lt~~~ 85 (230)
T 2oqr_A 75 SVPVIMVTARD 85 (230)
T ss_dssp SCSEEEEECCH
T ss_pred CCCEEEEeCCC
Confidence 89999987644
No 140
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=28.49 E-value=1.4e+02 Score=22.43 Aligned_cols=80 Identities=11% Similarity=-0.026 Sum_probs=47.2
Q ss_pred eeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHH-HHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHh-
Q 017293 202 LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKF- 279 (374)
Q Consensus 202 ~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~-~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~- 279 (374)
+.+|.++|..|.... .....|. .|..|....+..-+ ..+.+.++|.||+..+- .+ .-|.-.+..+-+.
T Consensus 4 ~~~ilivdd~~~~~~--~l~~~l~-~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l--~~-----~~g~~~~~~l~~~~ 73 (133)
T 3nhm_A 4 KPKVLIVENSWTMRE--TLRLLLS-GEFDCTTAADGASGLQQALAHPPDVLISDVNM--DG-----MDGYALCGHFRSEP 73 (133)
T ss_dssp -CEEEEECSCHHHHH--HHHHHHT-TTSEEEEESSHHHHHHHHHHSCCSEEEECSSC--SS-----SCHHHHHHHHHHST
T ss_pred CCEEEEEcCCHHHHH--HHHHHHh-CCcEEEEECCHHHHHHHHhcCCCCEEEEeCCC--CC-----CCHHHHHHHHHhCC
Confidence 457888887765422 2233455 78888877765433 23455789999887643 22 2243344444442
Q ss_pred --cCCeEEEeccCc
Q 017293 280 --HNILFYVAAPLT 291 (374)
Q Consensus 280 --~~vPvyV~a~~~ 291 (374)
.++|+++++...
T Consensus 74 ~~~~~pii~~s~~~ 87 (133)
T 3nhm_A 74 TLKHIPVIFVSGYA 87 (133)
T ss_dssp TTTTCCEEEEESCC
T ss_pred ccCCCCEEEEeCCC
Confidence 379999987643
No 141
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=28.44 E-value=2.6e+02 Score=25.96 Aligned_cols=81 Identities=20% Similarity=0.237 Sum_probs=45.6
Q ss_pred HHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHH----------------------HHHHhcC
Q 017293 189 ALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAA----------------------AALMKDG 246 (374)
Q Consensus 189 v~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav----------------------~~~m~~~ 246 (374)
++.+.+.+.++|..+..+ +..+ |.+ .+.+.+.|+++..|+-... ..++++.
T Consensus 19 alala~~L~~~g~~V~~v-g~~~----g~e--~~~v~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 91 (365)
T 3s2u_A 19 ALACAREFQARGYAVHWL-GTPR----GIE--NDLVPKAGLPLHLIQVSGLRGKGLKSLVKAPLELLKSLFQALRVIRQL 91 (365)
T ss_dssp HHHHHHHHHHTTCEEEEE-ECSS----STH--HHHTGGGTCCEEECC--------------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEE-ECCc----hHh--hchhhhcCCcEEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455556667777655433 3222 221 2234567888877763211 1234455
Q ss_pred CCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEe
Q 017293 247 RVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (374)
Q Consensus 247 ~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~ 287 (374)
+.|.|+ ..|+.+ +.+..++|+..++|+++-
T Consensus 92 ~PDvVi-------~~g~~~----s~p~~laA~~~~iP~vih 121 (365)
T 3s2u_A 92 RPVCVL-------GLGGYV----TGPGGLAARLNGVPLVIH 121 (365)
T ss_dssp CCSEEE-------ECSSST----HHHHHHHHHHTTCCEEEE
T ss_pred CCCEEE-------EcCCcc----hHHHHHHHHHcCCCEEEE
Confidence 677663 345432 456778899999999973
No 142
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=28.40 E-value=85 Score=24.30 Aligned_cols=43 Identities=9% Similarity=0.187 Sum_probs=27.8
Q ss_pred HHHhcCCCCEEEEcceeeecCCCeec-ccccHHHHHHHHhcCCeEEEe
Q 017293 241 ALMKDGRVSAVIVGADRVAANGDTAN-KIGTYSLALCAKFHNILFYVA 287 (374)
Q Consensus 241 ~~m~~~~vd~VlvGAd~i~~nG~v~n-kiGT~~lA~~Ak~~~vPvyV~ 287 (374)
.+.++.++|.+++|+..- |++-. -.|+..-.+ .++-++||+|+
T Consensus 93 ~~a~~~~~dliV~G~~~~---~~~~~~~~Gs~~~~v-l~~~~~pVlvv 136 (137)
T 2z08_A 93 QAARAEKADLIVMGTRGL---GALGSLFLGSQSQRV-VAEAPCPVLLV 136 (137)
T ss_dssp HHHHHTTCSEEEEESSCT---TCCSCSSSCHHHHHH-HHHCSSCEEEE
T ss_pred HHHHHcCCCEEEECCCCC---chhhhhhhccHHHHH-HhcCCCCEEEe
Confidence 334456999999999853 22221 256655444 45578999986
No 143
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D
Probab=28.29 E-value=1e+02 Score=27.17 Aligned_cols=89 Identities=9% Similarity=-0.028 Sum_probs=48.6
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEE--cc-hHHHHHHhcCCCCEEEEcceeeecCCCeeccc
Q 017293 192 VIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLI--AD-SAAAALMKDGRVSAVIVGADRVAANGDTANKI 268 (374)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI--~D-sav~~~m~~~~vd~VlvGAd~i~~nG~v~nki 268 (374)
+++.+.++....+|+++..+|.. . .+|...++.+... .| ..+..++ .++|.|+--|-.- . +.-+|-.
T Consensus 16 l~~~L~~~~~g~~V~~~~r~~~~----~--~~l~~~~~~~~~~D~~d~~~l~~~~--~~~d~vi~~a~~~-~-~~~~n~~ 85 (287)
T 2jl1_A 16 VIQHLLKKVPASQIIAIVRNVEK----A--STLADQGVEVRHGDYNQPESLQKAF--AGVSKLLFISGPH-Y-DNTLLIV 85 (287)
T ss_dssp HHHHHTTTSCGGGEEEEESCTTT----T--HHHHHTTCEEEECCTTCHHHHHHHT--TTCSEEEECCCCC-S-CHHHHHH
T ss_pred HHHHHHHhCCCCeEEEEEcCHHH----H--hHHhhcCCeEEEeccCCHHHHHHHH--hcCCEEEEcCCCC-c-CchHHHH
Confidence 45555555113456665543321 1 2344556654321 22 3455667 6788887654321 1 1123778
Q ss_pred ccHHHHHHHHhcCCeEEEeccC
Q 017293 269 GTYSLALCAKFHNILFYVAAPL 290 (374)
Q Consensus 269 GT~~lA~~Ak~~~vPvyV~a~~ 290 (374)
|+..+.-+|+..+++-+|...+
T Consensus 86 ~~~~l~~a~~~~~~~~~v~~Ss 107 (287)
T 2jl1_A 86 QHANVVKAARDAGVKHIAYTGY 107 (287)
T ss_dssp HHHHHHHHHHHTTCSEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEECC
Confidence 9999999999988865554443
No 144
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=28.29 E-value=1.3e+02 Score=27.00 Aligned_cols=63 Identities=8% Similarity=0.025 Sum_probs=38.7
Q ss_pred HhhCCCCeEEEcc---hHHHHH---HhcCCCCEEEEcceeeecCCCeecc-cccHHHHHHHHhcCCeEEEeccC
Q 017293 224 LVHDRIPATLIAD---SAAAAL---MKDGRVSAVIVGADRVAANGDTANK-IGTYSLALCAKFHNILFYVAAPL 290 (374)
Q Consensus 224 L~~~GI~vtlI~D---sav~~~---m~~~~vd~VlvGAd~i~~nG~v~nk-iGT~~lA~~Ak~~~vPvyV~a~~ 290 (374)
+...|+++....- .....+ .++..+|+|++|...- |..-.. .|+....+ .++-+.||+|+-+.
T Consensus 82 ~~~~~v~~~~~~~~~g~~~~~i~~~a~~~~~DLiV~G~~g~---~~~~~~~~Gs~~~~v-l~~~~~PVlvv~~~ 151 (319)
T 3olq_A 82 YLEAGIQIDIKVIWHNRPYEAIIEEVITDKHDLLIKMAHQH---DKLGSLIFTPLDWQL-LRKCPAPVWMVKDK 151 (319)
T ss_dssp HHHTTCCEEEEEEECSCHHHHHHHHHHHHTCSEEEEEEBCC-----CCSCBCCHHHHHH-HHHCSSCEEEEESS
T ss_pred HhhcCCeEEEEEEecCChHHHHHHHHHhcCCCEEEEecCcC---chhhcccccccHHHH-HhcCCCCEEEecCc
Confidence 3457888765432 222222 2346899999999863 222222 57766555 46778999998654
No 145
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}
Probab=28.20 E-value=2.2e+02 Score=25.11 Aligned_cols=98 Identities=14% Similarity=0.080 Sum_probs=52.4
Q ss_pred EEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCC-CC----cchHhHHHHHhhCCCCeEEE--cc-hHHHHH
Q 017293 171 SVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRP-FN----QGSRLTAFELVHDRIPATLI--AD-SAAAAL 242 (374)
Q Consensus 171 ~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP-~~----eG~~l~a~~L~~~GI~vtlI--~D-sav~~~ 242 (374)
+||..+-+|.+ | ..+++.+.++|. +|+++--+| .. +..+. ..+|...|+.+... .| .++..+
T Consensus 4 ~vlVtGatG~i-----G--~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~~~~~-~~~l~~~~v~~v~~D~~d~~~l~~~ 73 (307)
T 2gas_A 4 KILILGPTGAI-----G--RHIVWASIKAGN--PTYALVRKTITAANPETKEEL-IDNYQSLGVILLEGDINDHETLVKA 73 (307)
T ss_dssp CEEEESTTSTT-----H--HHHHHHHHHHTC--CEEEEECCSCCSSCHHHHHHH-HHHHHHTTCEEEECCTTCHHHHHHH
T ss_pred EEEEECCCchH-----H--HHHHHHHHhCCC--cEEEEECCCcccCChHHHHHH-HHHHHhCCCEEEEeCCCCHHHHHHH
Confidence 46666655533 2 234455555574 455543332 11 11111 23456678765432 22 345666
Q ss_pred HhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcC-CeEEEe
Q 017293 243 MKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHN-ILFYVA 287 (374)
Q Consensus 243 m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~-vPvyV~ 287 (374)
+ ..+|.||--| +..+-.|+..++-+|+..+ ++-+|.
T Consensus 74 ~--~~~d~vi~~a-------~~~~~~~~~~l~~aa~~~g~v~~~v~ 110 (307)
T 2gas_A 74 I--KQVDIVICAA-------GRLLIEDQVKIIKAIKEAGNVKKFFP 110 (307)
T ss_dssp H--TTCSEEEECS-------SSSCGGGHHHHHHHHHHHCCCSEEEC
T ss_pred H--hCCCEEEECC-------cccccccHHHHHHHHHhcCCceEEee
Confidence 7 6677665543 2233567888888899888 887773
No 146
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=28.12 E-value=3.3e+02 Score=26.30 Aligned_cols=85 Identities=14% Similarity=0.080 Sum_probs=47.0
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcchHhHHH-HHhhCCCCeEEEcc---hHHHHHHhcCCC-CEEEEcceeee-cCCCee
Q 017293 192 VIRALHSEGVLERAYCSETRPFNQGSRLTAF-ELVHDRIPATLIAD---SAAAALMKDGRV-SAVIVGADRVA-ANGDTA 265 (374)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~-~L~~~GI~vtlI~D---sav~~~m~~~~v-d~VlvGAd~i~-~nG~v~ 265 (374)
+++...+.| -+|++.+ |.+.|..-... .+...|++++.++- ..+-..++ ++. ..|++ +.+. +.|.+
T Consensus 145 al~~l~~~G--d~Vi~~~--~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~ai~-~~tv~lV~l--e~p~NptG~v- 216 (445)
T 1qgn_A 145 MLLALVPAG--GHIVTTT--DCYRKTRIFIETILPKMGITATVIDPADVGALELALN-QKKVNLFFT--ESPTNPFLRC- 216 (445)
T ss_dssp HHHHHSCSS--CEEEEET--TSCHHHHHHHHHTGGGGTCEEEEECSSCHHHHHHHHH-HSCEEEEEE--ESSCTTTCCC-
T ss_pred HHHHHhCCC--CEEEEcC--CCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHhc-cCCCCEEEE--eCCCCCCCcc-
Confidence 444444444 4676665 66755321111 25678999999863 23344443 333 45544 2232 22333
Q ss_pred cccccHHHHHHHHhcCCeEEE
Q 017293 266 NKIGTYSLALCAKFHNILFYV 286 (374)
Q Consensus 266 nkiGT~~lA~~Ak~~~vPvyV 286 (374)
..+ -.++-+|++||++++|
T Consensus 217 ~dl--~~I~~la~~~g~~liv 235 (445)
T 1qgn_A 217 VDI--ELVSKLCHEKGALVCI 235 (445)
T ss_dssp CCH--HHHHHHHHHTTCEEEE
T ss_pred cCH--HHHHHHHHHcCCEEEE
Confidence 222 4678889999999887
No 147
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=28.08 E-value=1.5e+02 Score=26.10 Aligned_cols=68 Identities=19% Similarity=0.219 Sum_probs=39.4
Q ss_pred ccH-HHHHHHHHHCCC--eeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEc----------chHHHHHHhcCCCCEEEE
Q 017293 187 GTA-LGVIRALHSEGV--LERAYCSETRPFNQGSRLTAFELVHDRIPATLIA----------DSAAAALMKDGRVSAVIV 253 (374)
Q Consensus 187 ~tv-~~~l~~a~~~g~--~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~----------Dsav~~~m~~~~vd~Vlv 253 (374)
++. ..+|....+.+. .+..+++ .+|...|.+ ...+.|||+..+. |..+-..++..++|.+++
T Consensus 12 g~~~~~~l~~l~~~~~~~~i~~Vvs-~~~~~~~~~----~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~ 86 (216)
T 2ywr_A 12 GSNLQAIIDAIESGKVNASIELVIS-DNPKAYAIE----RCKKHNVECKVIQRKEFPSKKEFEERMALELKKKGVELVVL 86 (216)
T ss_dssp CHHHHHHHHHHHTTSSCEEEEEEEE-SCTTCHHHH----HHHHHTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cHHHHHHHHHHHhCCCCCeEEEEEe-CCCChHHHH----HHHHcCCCEEEeCcccccchhhhhHHHHHHHHhcCCCEEEE
Confidence 444 445555554443 3333343 345554433 2356799998764 245556677789999888
Q ss_pred cce-eee
Q 017293 254 GAD-RVA 259 (374)
Q Consensus 254 GAd-~i~ 259 (374)
.+= +|+
T Consensus 87 a~y~~il 93 (216)
T 2ywr_A 87 AGFMRIL 93 (216)
T ss_dssp SSCCSCC
T ss_pred eCchhhC
Confidence 654 444
No 148
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=28.03 E-value=50 Score=28.31 Aligned_cols=36 Identities=8% Similarity=-0.107 Sum_probs=25.0
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEe
Q 017293 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCS 208 (374)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~ 208 (374)
.+|+++.+||||. -..+..+...|+++|..+-++..
T Consensus 77 ~~D~vii~S~Sg~-----n~~~ie~A~~ake~G~~vIaITs 112 (170)
T 3jx9_A 77 AVDRVLIFTPDTE-----RSDLLASLARYDAWHTPYSIITL 112 (170)
T ss_dssp TTCEEEEEESCSC-----CHHHHHHHHHHHHHTCCEEEEES
T ss_pred CCCEEEEEeCCCC-----CHHHHHHHHHHHHCCCcEEEEeC
Confidence 6799999999863 23356677778887766555544
No 149
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=27.89 E-value=87 Score=30.47 Aligned_cols=85 Identities=18% Similarity=0.117 Sum_probs=50.5
Q ss_pred cccH-HHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhc---CCCCEEEEcceeeecC
Q 017293 186 YGTA-LGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKD---GRVSAVIVGADRVAAN 261 (374)
Q Consensus 186 ~~tv-~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~---~~vd~VlvGAd~i~~n 261 (374)
+|.+ ..+.+.+.+.| ..|++.|..|.. ..++.+.|+++.+- |..=..++.+ .+++.||+..+
T Consensus 12 ~Gr~G~~va~~L~~~g--~~vvvId~d~~~------v~~~~~~g~~vi~G-Dat~~~~L~~agi~~A~~viv~~~----- 77 (413)
T 3l9w_A 12 FGRFGQITGRLLLSSG--VKMVVLDHDPDH------IETLRKFGMKVFYG-DATRMDLLESAGAAKAEVLINAID----- 77 (413)
T ss_dssp CSHHHHHHHHHHHHTT--CCEEEEECCHHH------HHHHHHTTCCCEES-CTTCHHHHHHTTTTTCSEEEECCS-----
T ss_pred CCHHHHHHHHHHHHCC--CCEEEEECCHHH------HHHHHhCCCeEEEc-CCCCHHHHHhcCCCccCEEEECCC-----
Confidence 4443 33445566656 467777877642 35677889987543 4443333322 56777776554
Q ss_pred CCeecccccHHHHHHHHhcCCe--EEEec
Q 017293 262 GDTANKIGTYSLALCAKFHNIL--FYVAA 288 (374)
Q Consensus 262 G~v~nkiGT~~lA~~Ak~~~vP--vyV~a 288 (374)
+..-+..++..||.++.. +++-+
T Consensus 78 ----~~~~n~~i~~~ar~~~p~~~Iiara 102 (413)
T 3l9w_A 78 ----DPQTNLQLTEMVKEHFPHLQIIARA 102 (413)
T ss_dssp ----SHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred ----ChHHHHHHHHHHHHhCCCCeEEEEE
Confidence 245567788889998754 44433
No 150
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=27.84 E-value=1.1e+02 Score=23.71 Aligned_cols=82 Identities=9% Similarity=-0.023 Sum_probs=49.6
Q ss_pred CCCeeEEEEecCCCCCcchHhHHHHHhhC-CCCeE-EEcchHHH-HHHhcC-CCCEEEEcceeeecCCCeecccccHHHH
Q 017293 199 EGVLERAYCSETRPFNQGSRLTAFELVHD-RIPAT-LIADSAAA-ALMKDG-RVSAVIVGADRVAANGDTANKIGTYSLA 274 (374)
Q Consensus 199 ~g~~~~V~v~EsrP~~eG~~l~a~~L~~~-GI~vt-lI~Dsav~-~~m~~~-~vd~VlvGAd~i~~nG~v~nkiGT~~lA 274 (374)
.+...+|+++|..|.... .....|.+. |+.+. ...+..-+ ..+++. .+|.||+..+- ++ .-|.-.+.
T Consensus 10 ~~~~~~vlivdd~~~~~~--~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~dlvilD~~l--~~-----~~g~~~~~ 80 (145)
T 3kyj_B 10 HGSPYNVMIVDDAAMMRL--YIASFIKTLPDFKVVAQAANGQEALDKLAAQPNVDLILLDIEM--PV-----MDGMEFLR 80 (145)
T ss_dssp -CCSEEEEEECSCHHHHH--HHHHHHTTCTTEEEEEEESSHHHHHHHHHHCTTCCEEEECTTS--CC-----CTTCHHHH
T ss_pred CCCCCeEEEEcCCHHHHH--HHHHHHHhCCCceEEEEECCHHHHHHHHhcCCCCCEEEEeCCC--CC-----CCHHHHHH
Confidence 477889999998876532 235567776 78765 44443322 233445 79999986542 22 23445555
Q ss_pred HHHHhcCCeEEEecc
Q 017293 275 LCAKFHNILFYVAAP 289 (374)
Q Consensus 275 ~~Ak~~~vPvyV~a~ 289 (374)
.+-+.+..|+++++.
T Consensus 81 ~lr~~~~~~iiil~~ 95 (145)
T 3kyj_B 81 HAKLKTRAKICMLSS 95 (145)
T ss_dssp HHHHHCCCEEC-CBS
T ss_pred HHHhcCCCCeEEEEE
Confidence 555666788888764
No 151
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=27.61 E-value=2e+02 Score=22.25 Aligned_cols=83 Identities=12% Similarity=0.091 Sum_probs=49.2
Q ss_pred CeeEEEEecCCCCCcchHhHHHHHhhCCC--CeEEEcchHHHHH-H---------hcCCCCEEEEcceeeecCCCeeccc
Q 017293 201 VLERAYCSETRPFNQGSRLTAFELVHDRI--PATLIADSAAAAL-M---------KDGRVSAVIVGADRVAANGDTANKI 268 (374)
Q Consensus 201 ~~~~V~v~EsrP~~eG~~l~a~~L~~~GI--~vtlI~Dsav~~~-m---------~~~~vd~VlvGAd~i~~nG~v~nki 268 (374)
+..+|.++|..|...- .....|.+.|. .+....+..-+.- + +....|.||+..+- ++ .-
T Consensus 3 ~~~~ILivddd~~~~~--~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l--~~-----~~ 73 (152)
T 3heb_A 3 LSVTIVMIEDDLGHAR--LIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNL--PD-----MT 73 (152)
T ss_dssp --CEEEEECCCHHHHH--HHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBC--SS-----SB
T ss_pred CCceEEEEeCCHHHHH--HHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCC--CC-----Cc
Confidence 3568888888776532 23566888888 6777666544332 2 24678988887542 22 22
Q ss_pred ccHHHHHHHH---hcCCeEEEeccCcc
Q 017293 269 GTYSLALCAK---FHNILFYVAAPLTS 292 (374)
Q Consensus 269 GT~~lA~~Ak---~~~vPvyV~a~~~K 292 (374)
|--.+..+-+ ..++|+++++....
T Consensus 74 g~~~~~~lr~~~~~~~~pii~~t~~~~ 100 (152)
T 3heb_A 74 GIDILKLVKENPHTRRSPVVILTTTDD 100 (152)
T ss_dssp HHHHHHHHHHSTTTTTSCEEEEESCCC
T ss_pred HHHHHHHHHhcccccCCCEEEEecCCC
Confidence 3333333333 35799999876543
No 152
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=27.49 E-value=1.1e+02 Score=22.65 Aligned_cols=77 Identities=13% Similarity=0.117 Sum_probs=46.2
Q ss_pred eEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHH-HHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHh--
Q 017293 203 ERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKF-- 279 (374)
Q Consensus 203 ~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~-~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~-- 279 (374)
.+|.++|..|.... .....|.+.|+.|....+..-+ ..+++...|.|++..+- .++ .-|--.+..+-+.
T Consensus 6 ~~ilivdd~~~~~~--~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvi~d~~~--~~~----~~g~~~~~~l~~~~~ 77 (127)
T 2gkg_A 6 KKILIVESDTALSA--TLRSALEGRGFTVDETTDGKGSVEQIRRDRPDLVVLAVDL--SAG----QNGYLICGKLKKDDD 77 (127)
T ss_dssp CEEEEECSCHHHHH--HHHHHHHHHTCEEEEECCHHHHHHHHHHHCCSEEEEESBC--GGG----CBHHHHHHHHHHSTT
T ss_pred CeEEEEeCCHHHHH--HHHHHHHhcCceEEEecCHHHHHHHHHhcCCCEEEEeCCC--CCC----CCHHHHHHHHhcCcc
Confidence 47888887775422 2355677889988877664433 23445678999886642 201 1233333344333
Q ss_pred -cCCeEEEe
Q 017293 280 -HNILFYVA 287 (374)
Q Consensus 280 -~~vPvyV~ 287 (374)
.++|++++
T Consensus 78 ~~~~~ii~~ 86 (127)
T 2gkg_A 78 LKNVPIVII 86 (127)
T ss_dssp TTTSCEEEE
T ss_pred ccCCCEEEE
Confidence 57999988
No 153
>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4
Probab=27.48 E-value=68 Score=33.82 Aligned_cols=47 Identities=13% Similarity=0.195 Sum_probs=30.4
Q ss_pred ccHHHHHHHHHHCCCeeEEEEecCCCCCc--chHhHHHHHhhCCCCeEEE
Q 017293 187 GTALGVIRALHSEGVLERAYCSETRPFNQ--GSRLTAFELVHDRIPATLI 234 (374)
Q Consensus 187 ~tv~~~l~~a~~~g~~~~V~v~EsrP~~e--G~~l~a~~L~~~GI~vtlI 234 (374)
+.+...|..|.++|++.+|.|.-.....+ ..+. ++.|.+.|+.|.+-
T Consensus 384 s~Iv~ALi~AA~rGv~V~vLvel~arfdee~ni~w-a~~Le~aGv~Vv~g 432 (705)
T 2o8r_A 384 SSIISALEAAAQSGKKVSVFVELKARFDEENNLRL-SERMRRSGIRIVYS 432 (705)
T ss_dssp CHHHHHHHHHHHTTCEEEEEECCCSCC----CHHH-HHHHHHHTCEEEEC
T ss_pred HHHHHHHHHHHHCCCEEEEEEeCCCCcchhhhHHH-HHHHHHCCCEEEEc
Confidence 45666677777788888888774333333 3333 66788888888763
No 154
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=27.38 E-value=39 Score=31.45 Aligned_cols=103 Identities=13% Similarity=0.099 Sum_probs=62.6
Q ss_pred cEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCCCC
Q 017293 170 FSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVS 249 (374)
Q Consensus 170 ~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~vd 249 (374)
|.++.+.+. ..+...++.+.+.|.+.-|++++.-|..+-.++ .....+.|+ .++-.|+++.+- +...
T Consensus 73 DvaIi~vp~--------~~~~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l-~~~A~~~gi--~viGPNc~Gii~--~~~~ 139 (297)
T 2yv2_A 73 NTSIVFVPA--------PFAPDAVYEAVDAGIRLVVVITEGIPVHDTMRF-VNYARQKGA--TIIGPNCPGAIT--PGQA 139 (297)
T ss_dssp CEEEECCCG--------GGHHHHHHHHHHTTCSEEEECCCCCCHHHHHHH-HHHHHHHTC--EEECSSSCEEEE--TTTE
T ss_pred CEEEEecCH--------HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH-HHHHHHcCC--EEEcCCCCeeEc--cccc
Confidence 566555543 467888888888887766777776665444444 334555666 466555655433 4333
Q ss_pred EEEEcceeeecCCC--eecccccHHHHHH--HHhcCCeEE
Q 017293 250 AVIVGADRVAANGD--TANKIGTYSLALC--AKFHNILFY 285 (374)
Q Consensus 250 ~VlvGAd~i~~nG~--v~nkiGT~~lA~~--Ak~~~vPvy 285 (374)
+.-.....+..-|. ++...|++..+++ +...++.|-
T Consensus 140 ~~~~~~~~~~~~G~va~vSqSG~l~~~~~~~~~~~g~G~s 179 (297)
T 2yv2_A 140 KVGIMPGHIFKEGGVAVVSRSGTLTYEISYMLTRQGIGQS 179 (297)
T ss_dssp EEESCCGGGCCEEEEEEEESCHHHHHHHHHHHHHTTCCEE
T ss_pred ceeecccCCCCCCCEEEEECCHHHHHHHHHHHHHcCCCee
Confidence 33222233344564 6899999987764 556777775
No 155
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=26.96 E-value=1.2e+02 Score=26.09 Aligned_cols=81 Identities=11% Similarity=0.069 Sum_probs=49.3
Q ss_pred eeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHH-HHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhc
Q 017293 202 LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFH 280 (374)
Q Consensus 202 ~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~-~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~ 280 (374)
..+|.++|..|.... .....|...|..|....+..-+ ..+.+..+|.||+..+ +++. -|--.+..+-+..
T Consensus 5 ~~~ILivdd~~~~~~--~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvilD~~--l~~~-----~g~~~~~~lr~~~ 75 (238)
T 2gwr_A 5 RQRILVVDDDASLAE--MLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLM--LPGM-----NGIDVCRVLRADS 75 (238)
T ss_dssp CCEEEEECSCHHHHH--HHHHHHHHTTCEEEEECCGGGHHHHHHHHCCSEEEEESS--CSSS-----CHHHHHHHHHTTC
T ss_pred cCeEEEEeCCHHHHH--HHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEeCC--CCCC-----CHHHHHHHHHhCC
Confidence 357888888776522 2245677789888776654332 2344567899988653 2322 2444444444456
Q ss_pred CCeEEEeccCc
Q 017293 281 NILFYVAAPLT 291 (374)
Q Consensus 281 ~vPvyV~a~~~ 291 (374)
++|+++++...
T Consensus 76 ~~~ii~lt~~~ 86 (238)
T 2gwr_A 76 GVPIVMLTAKT 86 (238)
T ss_dssp CCCEEEEEETT
T ss_pred CCcEEEEeCCC
Confidence 89999987543
No 156
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=26.89 E-value=77 Score=31.76 Aligned_cols=73 Identities=21% Similarity=0.203 Sum_probs=44.9
Q ss_pred eEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHH--------------------HHHHhcCCCCEEEEcceeeecCC
Q 017293 203 ERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAA--------------------AALMKDGRVSAVIVGADRVAANG 262 (374)
Q Consensus 203 ~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav--------------------~~~m~~~~vd~VlvGAd~i~~nG 262 (374)
-+|+|+-.- .-|..+ +++|.+.|+++++|-.+.- ..=+ .++|.|++..+.
T Consensus 349 ~~viIiG~G--~~G~~l-a~~L~~~g~~v~vid~d~~~~~~~~~~i~gD~t~~~~L~~agi--~~ad~vi~~~~~----- 418 (565)
T 4gx0_A 349 ELIFIIGHG--RIGCAA-AAFLDRKPVPFILIDRQESPVCNDHVVVYGDATVGQTLRQAGI--DRASGIIVTTND----- 418 (565)
T ss_dssp CCEEEECCS--HHHHHH-HHHHHHTTCCEEEEESSCCSSCCSSCEEESCSSSSTHHHHHTT--TSCSEEEECCSC-----
T ss_pred CCEEEECCC--HHHHHH-HHHHHHCCCCEEEEECChHHHhhcCCEEEeCCCCHHHHHhcCc--cccCEEEEECCC-----
Confidence 566666542 236655 7899999999999873321 0112 455655544331
Q ss_pred CeecccccHHHHHHHHhcCCeEEEecc
Q 017293 263 DTANKIGTYSLALCAKFHNILFYVAAP 289 (374)
Q Consensus 263 ~v~nkiGT~~lA~~Ak~~~vPvyV~a~ 289 (374)
.-=+..+++.||..+.+..+++-
T Consensus 419 ----d~~ni~~~~~ak~l~~~~~iiar 441 (565)
T 4gx0_A 419 ----DSTNIFLTLACRHLHSHIRIVAR 441 (565)
T ss_dssp ----HHHHHHHHHHHHHHCSSSEEEEE
T ss_pred ----chHHHHHHHHHHHHCCCCEEEEE
Confidence 23457788999999987555543
No 157
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=26.88 E-value=1.3e+02 Score=25.43 Aligned_cols=103 Identities=10% Similarity=-0.006 Sum_probs=54.7
Q ss_pred cEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEE---EcchHHHHHHhcC
Q 017293 170 FSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATL---IADSAAAALMKDG 246 (374)
Q Consensus 170 ~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtl---I~Dsav~~~m~~~ 246 (374)
.+||..+-+|.+ | ..+.+.+.++| .+|+++.-+|.... . +. .++.+.. -....+..++ .
T Consensus 5 ~~ilItGatG~i-----G--~~l~~~L~~~g--~~V~~~~r~~~~~~-~-----~~-~~~~~~~~Dl~d~~~~~~~~--~ 66 (227)
T 3dhn_A 5 KKIVLIGASGFV-----G--SALLNEALNRG--FEVTAVVRHPEKIK-I-----EN-EHLKVKKADVSSLDEVCEVC--K 66 (227)
T ss_dssp CEEEEETCCHHH-----H--HHHHHHHHTTT--CEEEEECSCGGGCC-C-----CC-TTEEEECCCTTCHHHHHHHH--T
T ss_pred CEEEEEcCCchH-----H--HHHHHHHHHCC--CEEEEEEcCcccch-h-----cc-CceEEEEecCCCHHHHHHHh--c
Confidence 356666544322 1 33556666666 56777655443211 1 11 2222111 1123456667 7
Q ss_pred CCCEEEEcceeeecCCC--eecccccHHHHHHHHhcCCeEEEeccC
Q 017293 247 RVSAVIVGADRVAANGD--TANKIGTYSLALCAKFHNILFYVAAPL 290 (374)
Q Consensus 247 ~vd~VlvGAd~i~~nG~--v~nkiGT~~lA~~Ak~~~vPvyV~a~~ 290 (374)
++|.|+--|-....+-. -.|-.|+..+.-+|+..+++-+|...+
T Consensus 67 ~~d~vi~~a~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss 112 (227)
T 3dhn_A 67 GADAVISAFNPGWNNPDIYDETIKVYLTIIDGVKKAGVNRFLMVGG 112 (227)
T ss_dssp TCSEEEECCCC------CCSHHHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred CCCEEEEeCcCCCCChhHHHHHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 89988876633322211 137889999999999999865555443
No 158
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=26.79 E-value=1.7e+02 Score=24.41 Aligned_cols=80 Identities=14% Similarity=0.026 Sum_probs=48.5
Q ss_pred eEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHH-HHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHh-c
Q 017293 203 ERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKF-H 280 (374)
Q Consensus 203 ~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~-~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~-~ 280 (374)
.+|.++|..|.... .....|...|..|....+..-+ ..+.+...|.||+..+ ++++ -|--.+..+-+. .
T Consensus 3 ~~ilivdd~~~~~~--~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvllD~~--l~~~-----~g~~~~~~lr~~~~ 73 (225)
T 1kgs_A 3 VRVLVVEDERDLAD--LITEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIM--LPVH-----DGWEILKSMRESGV 73 (225)
T ss_dssp CEEEEECSSHHHHH--HHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSS-----CHHHHHHHHHHTTC
T ss_pred ceEEEEeCCHHHHH--HHHHHHHHCCCEEEEECCHHHHHHHHhcCCCCEEEEeCC--CCCC-----CHHHHHHHHHhcCC
Confidence 46888888776532 2245677889988866664433 2345578999988653 2322 243333333333 4
Q ss_pred CCeEEEeccCc
Q 017293 281 NILFYVAAPLT 291 (374)
Q Consensus 281 ~vPvyV~a~~~ 291 (374)
++|+++++...
T Consensus 74 ~~~ii~ls~~~ 84 (225)
T 1kgs_A 74 NTPVLMLTALS 84 (225)
T ss_dssp CCCEEEEESSC
T ss_pred CCCEEEEeCCC
Confidence 79999987654
No 159
>1to6_A Glycerate kinase; glycerate metabolism, structural genomics T831, PSI, protein structure initiative; 2.50A {Neisseria meningitidis serogroup A} SCOP: c.141.1.1
Probab=26.71 E-value=27 Score=33.91 Aligned_cols=48 Identities=15% Similarity=0.116 Sum_probs=33.4
Q ss_pred HHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccCccc
Q 017293 241 ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSI 293 (374)
Q Consensus 241 ~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~K~ 293 (374)
..+ ...|+||.|==++ |.....---...+|-.||. +|||+++|.+...
T Consensus 274 ~~l--~~ADLVITGEG~~--D~QT~~GK~p~gVa~~A~~-~~PviaiaG~~~~ 321 (371)
T 1to6_A 274 KKV--SDVDLVIVGEGRL--DRQSLAGKAPIGVAKRTPV-GVPVVAICGSLVE 321 (371)
T ss_dssp HHT--TTCSEEEECCSEE--CSTTTTTCHHHHHHTTSCT-TCCEEEEESEECT
T ss_pred HHh--cCCCEEEECCCCC--CCCCCCCcHHHHHHHHHhc-CCCEEEEeCCCCC
Confidence 445 8999999998655 2222222234567778999 9999999987653
No 160
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=26.59 E-value=2.1e+02 Score=25.01 Aligned_cols=68 Identities=15% Similarity=0.232 Sum_probs=38.3
Q ss_pred ccH-HHHHHHHHHCC--CeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEc----------chHHHHHHhcCCCCEEEE
Q 017293 187 GTA-LGVIRALHSEG--VLERAYCSETRPFNQGSRLTAFELVHDRIPATLIA----------DSAAAALMKDGRVSAVIV 253 (374)
Q Consensus 187 ~tv-~~~l~~a~~~g--~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~----------Dsav~~~m~~~~vd~Vlv 253 (374)
++. ..+|....+.+ ..+..+++. +|...+.+ ...+.|||+..+. |..+-..++..++|.+++
T Consensus 14 g~~~~~~l~~l~~~~l~~~I~~Vit~-~~~~~v~~----~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dliv~ 88 (212)
T 3av3_A 14 GTNFQAIVDAAKRGDLPARVALLVCD-RPGAKVIE----RAARENVPAFVFSPKDYPSKAAFESEILRELKGRQIDWIAL 88 (212)
T ss_dssp CHHHHHHHHHHHTTCCCEEEEEEEES-STTCHHHH----HHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cHHHHHHHHHHHhCCCCCeEEEEEeC-CCCcHHHH----HHHHcCCCEEEeCcccccchhhhHHHHHHHHHhcCCCEEEE
Confidence 444 44555544432 233334443 34443322 3457899998765 235556677789999887
Q ss_pred cce-eee
Q 017293 254 GAD-RVA 259 (374)
Q Consensus 254 GAd-~i~ 259 (374)
.+= .|+
T Consensus 89 a~y~~il 95 (212)
T 3av3_A 89 AGYMRLI 95 (212)
T ss_dssp SSCCSCC
T ss_pred chhhhhC
Confidence 663 444
No 161
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=26.50 E-value=1.1e+02 Score=27.74 Aligned_cols=58 Identities=14% Similarity=0.099 Sum_probs=35.2
Q ss_pred HHhhCCCCeEEEcch-------HHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEecc
Q 017293 223 ELVHDRIPATLIADS-------AAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAP 289 (374)
Q Consensus 223 ~L~~~GI~vtlI~Ds-------av~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~ 289 (374)
.+.+.|+.+...... ++..+. +++|.+++..|... ++ ....+...++..++|+|...+
T Consensus 164 ~~~~~g~~~v~~~~~~~~~~~~~~~~l~--~~~d~i~~~~d~~~-----~~--~~~~i~~~~~~~~iPv~~~~~ 228 (302)
T 3lkv_A 164 SAAKHGIKLVEATALKSADVQSATQAIA--EKSDVIYALIDNTV-----AS--AIEGMIVAANQAKTPVFGAAT 228 (302)
T ss_dssp HHHHTTCEEEEEECSSGGGHHHHHHHHH--TTCSEEEECSCHHH-----HH--THHHHHHHHHHTTCCEEESSH
T ss_pred HHHHcCCEEEEEecCChHHHHHHHHhcc--CCeeEEEEeCCcch-----hh--HHHHHHHHHhhcCCceeeccc
Confidence 345677766544321 223333 78999887765433 22 234456688999999998644
No 162
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=26.48 E-value=1.9e+02 Score=21.95 Aligned_cols=80 Identities=11% Similarity=0.014 Sum_probs=47.9
Q ss_pred eEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHH-HHh--cCCCCEEEEcceeeecCCCeecccccHHHHHHHH-
Q 017293 203 ERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAA-LMK--DGRVSAVIVGADRVAANGDTANKIGTYSLALCAK- 278 (374)
Q Consensus 203 ~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~-~m~--~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak- 278 (374)
.+|.++|..|.... .....|.+.|..+....+..-+. .+. ...+|.||+..+- .++ -|.-.+..+-+
T Consensus 4 ~~ilivdd~~~~~~--~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l--~~~-----~g~~~~~~l~~~ 74 (143)
T 3jte_A 4 AKILVIDDESTILQ--NIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKM--PKL-----SGMDILREIKKI 74 (143)
T ss_dssp CEEEEECSCHHHHH--HHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCC--SSS-----CHHHHHHHHHHH
T ss_pred CEEEEEcCCHHHHH--HHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCC--CCC-----cHHHHHHHHHHh
Confidence 57788887765422 23556788888888776654433 233 4689999887642 222 23333333333
Q ss_pred hcCCeEEEeccCc
Q 017293 279 FHNILFYVAAPLT 291 (374)
Q Consensus 279 ~~~vPvyV~a~~~ 291 (374)
..++|+++++...
T Consensus 75 ~~~~~ii~ls~~~ 87 (143)
T 3jte_A 75 TPHMAVIILTGHG 87 (143)
T ss_dssp CTTCEEEEEECTT
T ss_pred CCCCeEEEEECCC
Confidence 3469999987643
No 163
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=26.36 E-value=31 Score=31.95 Aligned_cols=104 Identities=12% Similarity=0.032 Sum_probs=63.9
Q ss_pred cEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCCCC
Q 017293 170 FSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVS 249 (374)
Q Consensus 170 ~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~vd 249 (374)
|.++.+.+. ..+..+++.+.+.|.+.-|++++.-|..+-.++ .....+.|+ .++-.++.+.+- +...
T Consensus 66 Dv~Ii~vp~--------~~~~~~~~ea~~~Gi~~vVi~t~G~~~~~~~~l-~~~a~~~gi--~vigPNc~Gii~--~~~~ 132 (288)
T 1oi7_A 66 DASIIFVPA--------PAAADAALEAAHAGIPLIVLITEGIPTLDMVRA-VEEIKALGS--RLIGGNCPGIIS--AEET 132 (288)
T ss_dssp SEEEECCCH--------HHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHH-HHHHHHHTC--EEEESSSCEEEE--TTTE
T ss_pred CEEEEecCH--------HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH-HHHHHHcCC--EEEeCCCCeEEc--CCCc
Confidence 555555443 456778888888888777777777665443344 333455665 466566666443 4433
Q ss_pred EEEEcceeeecCCC--eecccccHHHHHH--HHhcCCeEEE
Q 017293 250 AVIVGADRVAANGD--TANKIGTYSLALC--AKFHNILFYV 286 (374)
Q Consensus 250 ~VlvGAd~i~~nG~--v~nkiGT~~lA~~--Ak~~~vPvyV 286 (374)
+....+..+..-|. ++.+.|++..+++ +...++.|--
T Consensus 133 ~~~~~~~~~~~~G~va~vsqSG~l~~~~~~~~~~~g~G~s~ 173 (288)
T 1oi7_A 133 KIGIMPGHVFKRGRVGIISRSGTLTYEAAAALSQAGLGTTT 173 (288)
T ss_dssp EEESSCGGGCCEEEEEEEESCHHHHHHHHHHHHHTTCCEEE
T ss_pred eeEEcccCCCCCCCEEEEECCHHHHHHHHHHHHhCCCCEEE
Confidence 33332333444564 6899999988775 6677888763
No 164
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=26.36 E-value=2.2e+02 Score=25.80 Aligned_cols=86 Identities=13% Similarity=0.082 Sum_probs=44.1
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEc----------c-hHHHHHHhcCCCCEEEEcceeeec
Q 017293 192 VIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIA----------D-SAAAALMKDGRVSAVIVGADRVAA 260 (374)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~----------D-sav~~~m~~~~vd~VlvGAd~i~~ 260 (374)
+++.+.+.| -+|++.+ |.+.+... .+...|.++..++ | ..+-..+ ++++..|++ ..---+
T Consensus 98 ~~~~l~~~g--d~vl~~~--~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~i-~~p~np 168 (383)
T 3kax_A 98 SIQAFTKEN--ESVLVQP--PIYPPFFE---MVTTNNRQLCVSPLQKQNDTYAIDFEHLEKQF-QQGVKLMLL-CSPHNP 168 (383)
T ss_dssp HHHHHCCTT--CEEEECS--SCCHHHHH---HHHHTTCEEEECCCEEETTEEECCHHHHHHHH-TTTCCEEEE-ESSBTT
T ss_pred HHHHhCCCC--CEEEEcC--CCcHHHHH---HHHHcCCEEEeccceecCCcEEEcHHHHHHHh-CcCCeEEEE-eCCCCC
Confidence 444444334 3555544 66766432 3456677666554 1 2233334 467777765 222222
Q ss_pred CCCeecccccHHHHHHHHhcCCeEEE
Q 017293 261 NGDTANKIGTYSLALCAKFHNILFYV 286 (374)
Q Consensus 261 nG~v~nkiGT~~lA~~Ak~~~vPvyV 286 (374)
.|.+...---..++-+|++|++++++
T Consensus 169 tG~~~~~~~l~~l~~~~~~~~~~li~ 194 (383)
T 3kax_A 169 IGRVWKKEELTKLGSLCTKYNVIVVA 194 (383)
T ss_dssp TTBCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred CCcCcCHHHHHHHHHHHHHCCCEEEE
Confidence 33333222223445569999999887
No 165
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=26.34 E-value=56 Score=25.07 Aligned_cols=82 Identities=10% Similarity=-0.007 Sum_probs=49.7
Q ss_pred CCeeEEEEecCCCCCcchHhHHHHHhhCC-CCeEEEcchHHHH-HHhcCCCCEEEEcceeeecCCCeecccccHHHHHHH
Q 017293 200 GVLERAYCSETRPFNQGSRLTAFELVHDR-IPATLIADSAAAA-LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCA 277 (374)
Q Consensus 200 g~~~~V~v~EsrP~~eG~~l~a~~L~~~G-I~vtlI~Dsav~~-~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~A 277 (374)
....+|.++|..|.... .....|.+.| +.|....+..-+. .+++..+|.||+..+ ++++ -|--.+..+-
T Consensus 12 ~~~~~ilivdd~~~~~~--~l~~~L~~~g~~~v~~~~~~~~a~~~l~~~~~dlvi~D~~--l~~~-----~g~~~~~~l~ 82 (135)
T 3snk_A 12 TKRKQVALFSSDPNFKR--DVATRLDALAIYDVRVSETDDFLKGPPADTRPGIVILDLG--GGDL-----LGKPGIVEAR 82 (135)
T ss_dssp -CCEEEEEECSCHHHHH--HHHHHHHHTSSEEEEEECGGGGGGCCCTTCCCSEEEEEEE--TTGG-----GGSTTHHHHH
T ss_pred CCCcEEEEEcCCHHHHH--HHHHHHhhcCCeEEEEeccHHHHHHHHhccCCCEEEEeCC--CCCc-----hHHHHHHHHH
Confidence 34568888888776532 2355688889 8888666544332 234567899988654 3322 2333333333
Q ss_pred Hh-cCCeEEEeccC
Q 017293 278 KF-HNILFYVAAPL 290 (374)
Q Consensus 278 k~-~~vPvyV~a~~ 290 (374)
+. .++|+++++..
T Consensus 83 ~~~~~~~ii~~s~~ 96 (135)
T 3snk_A 83 ALWATVPLIAVSDE 96 (135)
T ss_dssp GGGTTCCEEEEESC
T ss_pred hhCCCCcEEEEeCC
Confidence 33 37999998764
No 166
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=26.33 E-value=2e+02 Score=21.77 Aligned_cols=79 Identities=8% Similarity=-0.040 Sum_probs=46.4
Q ss_pred eEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHH-HHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHh--
Q 017293 203 ERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKF-- 279 (374)
Q Consensus 203 ~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~-~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~-- 279 (374)
.+|.++|..|.... .....|...|+.+....+..-+ ..+.+..+|.||+..+ +++. -|--.+..+-+.
T Consensus 4 ~~ILivdd~~~~~~--~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi~D~~--l~~~-----~g~~~~~~l~~~~~ 74 (138)
T 3c3m_A 4 YTILVVDDSPMIVD--VFVTMLERGGYRPITAFSGEECLEALNATPPDLVLLDIM--MEPM-----DGWETLERIKTDPA 74 (138)
T ss_dssp CEEEEECSCHHHHH--HHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSS-----CHHHHHHHHHHSTT
T ss_pred ceEEEEeCCHHHHH--HHHHHHHHcCceEEEeCCHHHHHHHHhccCCCEEEEeCC--CCCC-----CHHHHHHHHHcCcc
Confidence 46788887775422 2345677789888866654322 2345567899988654 2322 233333333332
Q ss_pred -cCCeEEEeccC
Q 017293 280 -HNILFYVAAPL 290 (374)
Q Consensus 280 -~~vPvyV~a~~ 290 (374)
.++|+++++..
T Consensus 75 ~~~~~ii~ls~~ 86 (138)
T 3c3m_A 75 TRDIPVLMLTAK 86 (138)
T ss_dssp TTTSCEEEEESS
T ss_pred cCCCCEEEEECC
Confidence 36899988654
No 167
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=26.32 E-value=1.8e+02 Score=28.17 Aligned_cols=89 Identities=7% Similarity=0.001 Sum_probs=49.1
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcchH-hH-------HHHHhhCCCCeEEEcc-------hHHHHHHhc-CCCCEEEEcc
Q 017293 192 VIRALHSEGVLERAYCSETRPFNQGSR-LT-------AFELVHDRIPATLIAD-------SAAAALMKD-GRVSAVIVGA 255 (374)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~eG~~-l~-------a~~L~~~GI~vtlI~D-------sav~~~m~~-~~vd~VlvGA 255 (374)
++....+.| -+|++.+ .|.+.|.+ +. ...+...|+.+..++- ..+-..+++ ++...|++..
T Consensus 108 al~all~pG--D~Vl~~~-~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~~~d~e~l~~~i~~~~~tklV~i~~ 184 (427)
T 3hvy_A 108 ALFGNLRPN--DTMMSIC-GMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDLKDGKVDINTVKEELKKDDSIKLIHIQR 184 (427)
T ss_dssp HHHHTCCTT--CEEEECS-SSCCGGGHHHHTCCTTCCSCCTGGGTCEEEECCCBTTBCCHHHHHHHHHHCTTEEEEEEES
T ss_pred HHHHhcCCC--CEEEEeC-CCCchhHHHHhccccchhhhHHHHcCCEEEEecCCCCCcCHHHHHHHhhCCCCCEEEEEEC
Confidence 444444434 4666665 34454442 21 0235567988887753 344555532 4566665544
Q ss_pred eeeecCCCeeccccc----HHHHHHHHh--cCCeEEEe
Q 017293 256 DRVAANGDTANKIGT----YSLALCAKF--HNILFYVA 287 (374)
Q Consensus 256 d~i~~nG~v~nkiGT----~~lA~~Ak~--~~vPvyV~ 287 (374)
.. |...|..|+ -.++-+|++ ++++++|=
T Consensus 185 s~----gyp~nptg~v~dl~~i~~ia~~~~~g~~livD 218 (427)
T 3hvy_A 185 ST----GYGWRKSLRIAEIAEIIKSIREVNENVIVFVD 218 (427)
T ss_dssp SC----CSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEE
T ss_pred CC----CCCCCccccHHHHHHHHHHHHHhCCCCEEEEE
Confidence 22 234566665 356677888 89988873
No 168
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=26.05 E-value=2e+02 Score=21.36 Aligned_cols=80 Identities=16% Similarity=0.177 Sum_probs=46.9
Q ss_pred eEEEEecCCCCCcchHhHHHHHhhCCC--CeEEEcchHHH-HHHhc-------CCCCEEEEcceeeecCCCeecccccHH
Q 017293 203 ERAYCSETRPFNQGSRLTAFELVHDRI--PATLIADSAAA-ALMKD-------GRVSAVIVGADRVAANGDTANKIGTYS 272 (374)
Q Consensus 203 ~~V~v~EsrP~~eG~~l~a~~L~~~GI--~vtlI~Dsav~-~~m~~-------~~vd~VlvGAd~i~~nG~v~nkiGT~~ 272 (374)
.+|.++|..|.... .....|.+.|. .+....+..-+ ..+.+ ...|.||+..+- ++ .-|--.
T Consensus 3 ~~ilivdd~~~~~~--~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~--~~-----~~g~~~ 73 (140)
T 1k68_A 3 KKIFLVEDNKADIR--LIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNL--PK-----KDGREV 73 (140)
T ss_dssp CEEEEECCCHHHHH--HHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSC--SS-----SCHHHH
T ss_pred CeEEEEeCCHHHHH--HHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCC--Cc-----ccHHHH
Confidence 46788887775432 23556888887 66666654333 23333 578999887643 22 223333
Q ss_pred HHHHHHh---cCCeEEEeccCc
Q 017293 273 LALCAKF---HNILFYVAAPLT 291 (374)
Q Consensus 273 lA~~Ak~---~~vPvyV~a~~~ 291 (374)
+..+-+. .++|+++++...
T Consensus 74 ~~~l~~~~~~~~~pii~ls~~~ 95 (140)
T 1k68_A 74 LAEIKSDPTLKRIPVVVLSTSI 95 (140)
T ss_dssp HHHHHHSTTGGGSCEEEEESCC
T ss_pred HHHHHcCcccccccEEEEecCC
Confidence 3444443 469999987643
No 169
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=25.70 E-value=2e+02 Score=24.20 Aligned_cols=82 Identities=12% Similarity=0.037 Sum_probs=50.4
Q ss_pred eeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHH-HHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHH-h
Q 017293 202 LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAK-F 279 (374)
Q Consensus 202 ~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~-~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak-~ 279 (374)
..+|.++|..|.... .....|...|+.|....+..-+ ..+.+..+|.||+..+ +++. -|--.+..+-+ .
T Consensus 7 ~~~ilivdd~~~~~~--~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvllD~~--l~~~-----~g~~~~~~l~~~~ 77 (233)
T 1ys7_A 7 SPRVLVVDDDSDVLA--SLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDIN--MPVL-----DGVSVVTALRAMD 77 (233)
T ss_dssp CCEEEEECSCHHHHH--HHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESS--CSSS-----CHHHHHHHHHHTT
T ss_pred CCeEEEEeCCHHHHH--HHHHHHHhCCCEEEEECCHHHHHHHHHhCCCCEEEEeCC--CCCC-----CHHHHHHHHHhcC
Confidence 468888988876532 2345677889988866665433 2345568999988653 2322 23333333333 3
Q ss_pred cCCeEEEeccCcc
Q 017293 280 HNILFYVAAPLTS 292 (374)
Q Consensus 280 ~~vPvyV~a~~~K 292 (374)
.++|+++++....
T Consensus 78 ~~~~ii~lt~~~~ 90 (233)
T 1ys7_A 78 NDVPVCVLSARSS 90 (233)
T ss_dssp CCCCEEEEECCCT
T ss_pred CCCCEEEEEcCCC
Confidence 5899999876543
No 170
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=25.69 E-value=2.3e+02 Score=24.59 Aligned_cols=58 Identities=17% Similarity=0.127 Sum_probs=33.8
Q ss_pred HHHHhhCCCCeEEE--cchH---HHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEe
Q 017293 221 AFELVHDRIPATLI--ADSA---AAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (374)
Q Consensus 221 a~~L~~~GI~vtlI--~Dsa---v~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~ 287 (374)
...|.+.|++++.. .... +-.+. .+.|.+++|+ .+ .+ . -.|+..-.+ .++-.+||+|+
T Consensus 205 ~~~l~~~~~~~~~~~~~g~~~~~i~~~a--~~~dliV~G~-~~--~~-~--~~Gs~~~~v-l~~~~~pvlvv 267 (268)
T 3ab8_A 205 EAYLRDHGVEASALVLGGDAADHLLRLQ--GPGDLLALGA-PV--RR-L--VFGSTAERV-IRNAQGPVLTA 267 (268)
T ss_dssp HHHHHHTTCCEEEEEECSCHHHHHHHHC--CTTEEEEEEC-CC--SC-C--SSCCHHHHH-HHHCSSCEEEE
T ss_pred HHHHHHcCCceEEEEeCCChHHHHHHHH--HhCCEEEECC-cc--cc-c--EeccHHHHH-HhcCCCCEEEe
Confidence 44577889987754 2222 22222 3339999999 21 11 1 246555444 45668999985
No 171
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=25.64 E-value=1.6e+02 Score=24.23 Aligned_cols=33 Identities=9% Similarity=0.060 Sum_probs=25.2
Q ss_pred HHHHhhCCCCeEEEcchHHHHHHhcCCCCEEEEcc
Q 017293 221 AFELVHDRIPATLIADSAAAALMKDGRVSAVIVGA 255 (374)
Q Consensus 221 a~~L~~~GI~vtlI~Dsav~~~m~~~~vd~VlvGA 255 (374)
++.+.+.|+++..|+++.-+.+- +.+|.++.-.
T Consensus 116 ~~~ak~~g~~vi~IT~~~~s~la--~~ad~~l~~~ 148 (183)
T 2xhz_A 116 IPVLKRLHVPLICITGRPESSMA--RAADVHLCVK 148 (183)
T ss_dssp HHHHHTTTCCEEEEESCTTSHHH--HHSSEEEECC
T ss_pred HHHHHHCCCCEEEEECCCCChhH--HhCCEEEEeC
Confidence 55677899999999997766666 6688777544
No 172
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=25.40 E-value=1e+02 Score=23.37 Aligned_cols=82 Identities=10% Similarity=-0.058 Sum_probs=49.9
Q ss_pred CeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHH-HHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHH-
Q 017293 201 VLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAK- 278 (374)
Q Consensus 201 ~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~-~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak- 278 (374)
..++|.++|..|.... .....|.+.|..|....+..-+ ..+++...|.||+..+- .+ .-|--.+..+-+
T Consensus 6 ~~~~ilivdd~~~~~~--~l~~~L~~~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l--~~-----~~g~~~~~~l~~~ 76 (137)
T 3hdg_A 6 VALKILIVEDDTDARE--WLSTIISNHFPEVWSAGDGEEGERLFGLHAPDVIITDIRM--PK-----LGGLEMLDRIKAG 76 (137)
T ss_dssp -CCCEEEECSCHHHHH--HHHHHHHTTCSCEEEESSHHHHHHHHHHHCCSEEEECSSC--SS-----SCHHHHHHHHHHT
T ss_pred cccEEEEEeCCHHHHH--HHHHHHHhcCcEEEEECCHHHHHHHHhccCCCEEEEeCCC--CC-----CCHHHHHHHHHhc
Confidence 3578888888776532 2355678888888877765443 33455689999887652 22 223333333333
Q ss_pred hcCCeEEEeccCc
Q 017293 279 FHNILFYVAAPLT 291 (374)
Q Consensus 279 ~~~vPvyV~a~~~ 291 (374)
..++|+++++...
T Consensus 77 ~~~~~ii~~s~~~ 89 (137)
T 3hdg_A 77 GAKPYVIVISAFS 89 (137)
T ss_dssp TCCCEEEECCCCC
T ss_pred CCCCcEEEEecCc
Confidence 3478998887643
No 173
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=25.39 E-value=1.9e+02 Score=24.44 Aligned_cols=31 Identities=10% Similarity=0.030 Sum_probs=24.2
Q ss_pred HHHHhhCCCCeEEEcchHHHHHHhcCCCCEEEE
Q 017293 221 AFELVHDRIPATLIADSAAAALMKDGRVSAVIV 253 (374)
Q Consensus 221 a~~L~~~GI~vtlI~Dsav~~~m~~~~vd~Vlv 253 (374)
++.+++.|+++..|+++.-+.+- +.+|.+|.
T Consensus 109 ~~~ak~~g~~vI~IT~~~~s~La--~~ad~~l~ 139 (200)
T 1vim_A 109 SKKAKDIGSKLVAVTGKRDSSLA--KMADVVMV 139 (200)
T ss_dssp HHHHHHHTCEEEEEESCTTSHHH--HHCSEEEE
T ss_pred HHHHHHCCCeEEEEECCCCChHH--HhCCEEEE
Confidence 55677889999999997766665 67888875
No 174
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=25.37 E-value=91 Score=25.79 Aligned_cols=63 Identities=14% Similarity=0.083 Sum_probs=37.7
Q ss_pred HHHHhhCCCCeEEEcchHHHHHH-h-cCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccC
Q 017293 221 AFELVHDRIPATLIADSAAAALM-K-DGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPL 290 (374)
Q Consensus 221 a~~L~~~GI~vtlI~Dsav~~~m-~-~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~ 290 (374)
+..|...|+++..+.|....... . -.+=|.||+ +...|. ..-+..++-.||..|+|+++++..
T Consensus 68 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vI~----iS~sG~---t~~~~~~~~~ak~~g~~vi~IT~~ 132 (183)
T 2xhz_A 68 AATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIA----ISNSGE---SSEITALIPVLKRLHVPLICITGR 132 (183)
T ss_dssp HHHHHTTTCCEEECCTTHHHHHTSTTCCTTCEEEE----ECSSSC---CHHHHHHHHHHHTTTCCEEEEESC
T ss_pred HHHHHhcCceEEEeCchHHhhhhhccCCCCCEEEE----EeCCCC---CHHHHHHHHHHHHCCCCEEEEECC
Confidence 44566677777777665433210 0 034455543 333452 334677778899999999998653
No 175
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=25.26 E-value=93 Score=23.17 Aligned_cols=80 Identities=11% Similarity=0.099 Sum_probs=46.2
Q ss_pred eEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHH-HHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHh--
Q 017293 203 ERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAA-LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKF-- 279 (374)
Q Consensus 203 ~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~-~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~-- 279 (374)
.+|.+.|..|.... .....|.+.|+.+....+..-+. .+.+...|.|++..+ ++++ -|--.+..+-+.
T Consensus 3 ~~ilivdd~~~~~~--~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~dlvi~D~~--l~~~-----~g~~~~~~l~~~~~ 73 (127)
T 2jba_A 3 RRILVVEDEAPIRE--MVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLAWM--LPGG-----SGIQFIKHLRRESM 73 (127)
T ss_dssp CEEEEECSCHHHHH--HHHHHHHHTTCEEEEECSHHHHHTTCSSSCCSEEEEESE--ETTE-----EHHHHHHHHHTSTT
T ss_pred cEEEEEcCCHHHHH--HHHHHHHHCCceEEEeCCHHHHHHHHhccCCCEEEEecC--CCCC-----CHHHHHHHHHhCcc
Confidence 36778887775421 23456778898887666544332 233456898888543 3322 243333334333
Q ss_pred -cCCeEEEeccCc
Q 017293 280 -HNILFYVAAPLT 291 (374)
Q Consensus 280 -~~vPvyV~a~~~ 291 (374)
.++|+++++...
T Consensus 74 ~~~~~ii~~s~~~ 86 (127)
T 2jba_A 74 TRDIPVVMLTARG 86 (127)
T ss_dssp TTTSCEEEEEETT
T ss_pred cCCCCEEEEeCCC
Confidence 478999987643
No 176
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=25.22 E-value=2.1e+02 Score=21.81 Aligned_cols=81 Identities=14% Similarity=0.112 Sum_probs=48.5
Q ss_pred eeEEEEecCCCCCcchHhHHHHHhhCCCC--eEEEcchHHH-HHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHH
Q 017293 202 LERAYCSETRPFNQGSRLTAFELVHDRIP--ATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAK 278 (374)
Q Consensus 202 ~~~V~v~EsrP~~eG~~l~a~~L~~~GI~--vtlI~Dsav~-~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak 278 (374)
..+|.++|..|... +.....|.+.|.. +....+..-+ ..+.+..+|.||+..+- .++ -|--.+..+-+
T Consensus 5 ~~~ILivdd~~~~~--~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~l--~~~-----~g~~~~~~lr~ 75 (144)
T 3kht_A 5 SKRVLVVEDNPDDI--ALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIGL--PIA-----NGFEVMSAVRK 75 (144)
T ss_dssp CEEEEEECCCHHHH--HHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTTC--GGG-----CHHHHHHHHHS
T ss_pred CCEEEEEeCCHHHH--HHHHHHHHhcCCCeeEEEECCHHHHHHHhhcCCCCEEEEeCCC--CCC-----CHHHHHHHHHh
Confidence 56888888877642 2235568888887 5555554332 33456778999887642 222 23333333333
Q ss_pred ---hcCCeEEEeccCc
Q 017293 279 ---FHNILFYVAAPLT 291 (374)
Q Consensus 279 ---~~~vPvyV~a~~~ 291 (374)
..++|+++++...
T Consensus 76 ~~~~~~~pii~~s~~~ 91 (144)
T 3kht_A 76 PGANQHTPIVILTDNV 91 (144)
T ss_dssp SSTTTTCCEEEEETTC
T ss_pred cccccCCCEEEEeCCC
Confidence 3579999987643
No 177
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=25.03 E-value=1.2e+02 Score=27.10 Aligned_cols=66 Identities=12% Similarity=0.122 Sum_probs=41.3
Q ss_pred HHhhCCCCeEE--Ec---chHHHHHHhcCCCCEEEEcceeeecCCCeec-ccccHHHHHHHHhcCCeEEEeccCcc
Q 017293 223 ELVHDRIPATL--IA---DSAAAALMKDGRVSAVIVGADRVAANGDTAN-KIGTYSLALCAKFHNILFYVAAPLTS 292 (374)
Q Consensus 223 ~L~~~GI~vtl--I~---Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~n-kiGT~~lA~~Ak~~~vPvyV~a~~~K 292 (374)
.+.+.|+++.. +. +..-.-+.++.++|.|++|...- +..-. -.|+..-.+ .++.++||+|+-+...
T Consensus 94 ~~~~~g~~~~~~~v~~~g~~~~~I~a~~~~~DliV~G~~g~---~~~~~~~~Gs~~~~v-l~~~~~PVlvv~~~~~ 165 (294)
T 3loq_A 94 KIEAAGIKAEVIKPFPAGDPVVEIIKASENYSFIAMGSRGA---SKFKKILLGSVSEGV-LHDSKVPVYIFKHDMV 165 (294)
T ss_dssp HHHHTTCEEEECSSCCEECHHHHHHHHHTTSSEEEEECCCC---CHHHHHHHCCHHHHH-HHHCSSCEEEECCCTT
T ss_pred HHHHcCCCcceeEeeccCChhHheeeccCCCCEEEEcCCCC---ccccceeeccHHHHH-HhcCCCCEEEecCccc
Confidence 35568999887 22 22222245668999999999742 22221 246655544 5667799999976654
No 178
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=24.94 E-value=48 Score=28.55 Aligned_cols=95 Identities=9% Similarity=-0.124 Sum_probs=50.8
Q ss_pred HHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcc-hHHHHHHhcCCCCEEEEcceeeecCCCeecc
Q 017293 189 ALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIAD-SAAAALMKDGRVSAVIVGADRVAANGDTANK 267 (374)
Q Consensus 189 v~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~D-sav~~~m~~~~vd~VlvGAd~i~~nG~v~nk 267 (374)
+..+++.+.+.|...+|+++++.-.+=... +-..|.. +|..-.| ..+.++=-....|.++|---+.--=+.++|-
T Consensus 21 ~~~ll~~L~~~g~~V~vv~T~~A~~fi~~~-~l~~l~~---~v~~~~~~~~~~hi~l~~~aD~~vVaPaTanTlakiA~G 96 (175)
T 3qjg_A 21 ISHYIIELKSKFDEVNVIASTNGRKFINGE-ILKQFCD---NYYDEFEDPFLNHVDIANKHDKIIILPATSNTINKIANG 96 (175)
T ss_dssp HHHHHHHHTTTCSEEEEEECTGGGGGSCHH-HHHHHCS---CEECTTTCTTCCHHHHHHTCSEEEEEEECHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCEEEEEECcCHHHHhhHH-HHHHhcC---CEEecCCCCccccccccchhCEEEEeeCCHHHHHHHHcc
Confidence 456788888888899999998765442322 2233433 4321112 1121221125789888764322111223333
Q ss_pred cccHHHHHHHHhcCCeEEEe
Q 017293 268 IGTYSLALCAKFHNILFYVA 287 (374)
Q Consensus 268 iGT~~lA~~Ak~~~vPvyV~ 287 (374)
+.--.+..++...++|++++
T Consensus 97 iaDnLlt~~~la~~~pvvl~ 116 (175)
T 3qjg_A 97 ICDNLLLTICHTAFEKLSIF 116 (175)
T ss_dssp CCCSHHHHHHHTCGGGEEEE
T ss_pred ccCCHHHHHHHHcCCCEEEE
Confidence 44444444556679999987
No 179
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=24.88 E-value=3.7e+02 Score=25.47 Aligned_cols=85 Identities=11% Similarity=0.059 Sum_probs=45.8
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcchHhHH-HHHhhCCCCeEEEcch---HHHHHHhcCCCCEEEEcceeee-cCCCeec
Q 017293 192 VIRALHSEGVLERAYCSETRPFNQGSRLTA-FELVHDRIPATLIADS---AAAALMKDGRVSAVIVGADRVA-ANGDTAN 266 (374)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a-~~L~~~GI~vtlI~Ds---av~~~m~~~~vd~VlvGAd~i~-~nG~v~n 266 (374)
.++.+.+.| -+|++. .|.+.|..... ..+...|++++.++-. ++-..+ +++...|++ +.+. +.|.+.
T Consensus 112 al~~l~~~G--d~Vi~~--~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~ai-~~~t~~v~l--e~p~NptG~~~- 183 (414)
T 3ndn_A 112 SLGALLGAG--DRLVAA--RSLFGSCFVVCSEILPRWGVQTVFVDGDDLSQWERAL-SVPTQAVFF--ETPSNPMQSLV- 183 (414)
T ss_dssp HHHTTCCTT--CEEEEE--SCCCHHHHHHHHTHHHHTTCEEEEECTTCHHHHHHHT-SSCCSEEEE--ESSCTTTCCCC-
T ss_pred HHHHHhCCC--CEEEEc--CCccchHHHHHHHHHHHcCcEEEEeCCCCHHHHHHhc-CCCCeEEEE--ECCCCCCCccc-
Confidence 344443334 355554 35665543212 1245689999998732 233334 245666655 2232 223332
Q ss_pred ccccHHHHHHHHhcCCeEEE
Q 017293 267 KIGTYSLALCAKFHNILFYV 286 (374)
Q Consensus 267 kiGT~~lA~~Ak~~~vPvyV 286 (374)
. --.++-+|+++|+++++
T Consensus 184 ~--l~~i~~la~~~g~~liv 201 (414)
T 3ndn_A 184 D--IAAVTELAHAAGAKVVL 201 (414)
T ss_dssp C--HHHHHHHHHHTTCEEEE
T ss_pred c--HHHHHHHHHHcCCEEEE
Confidence 2 24677889999999887
No 180
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=24.75 E-value=2e+02 Score=21.49 Aligned_cols=80 Identities=6% Similarity=-0.056 Sum_probs=44.8
Q ss_pred eeEEEEecCCCCCcchHhHHHHHhhCCCC-eEEEcchHHHH-HHh-cCCCCEEEEcceeeecCCCeecccccHHHHHHHH
Q 017293 202 LERAYCSETRPFNQGSRLTAFELVHDRIP-ATLIADSAAAA-LMK-DGRVSAVIVGADRVAANGDTANKIGTYSLALCAK 278 (374)
Q Consensus 202 ~~~V~v~EsrP~~eG~~l~a~~L~~~GI~-vtlI~Dsav~~-~m~-~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak 278 (374)
..+|.++|..|.... .....|.+.|.. +....+..-+. .+. ....|.|++..+ ++++ -|.-.+..+-+
T Consensus 5 ~~~iLivdd~~~~~~--~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~--~p~~-----~g~~~~~~lr~ 75 (129)
T 3h1g_A 5 SMKLLVVDDSSTMRR--IIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWN--MPEM-----NGLDLVKKVRS 75 (129)
T ss_dssp -CCEEEECSCHHHHH--HHHHHHHHTTCCCEEEESSHHHHHHHHHHCTTCCEEEECSC--CSSS-----CHHHHHHHHHT
T ss_pred CcEEEEEeCCHHHHH--HHHHHHHHcCCcEEEEeCCHHHHHHHHHhCCCCCEEEEeCC--CCCC-----CHHHHHHHHHh
Confidence 457888888776532 235568888986 55554443332 232 346898887543 3332 23333333322
Q ss_pred h---cCCeEEEeccC
Q 017293 279 F---HNILFYVAAPL 290 (374)
Q Consensus 279 ~---~~vPvyV~a~~ 290 (374)
. .++|+++++..
T Consensus 76 ~~~~~~~pii~~s~~ 90 (129)
T 3h1g_A 76 DSRFKEIPIIMITAE 90 (129)
T ss_dssp STTCTTCCEEEEESC
T ss_pred cCCCCCCeEEEEeCC
Confidence 1 36899998753
No 181
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=24.70 E-value=1.5e+02 Score=23.10 Aligned_cols=81 Identities=7% Similarity=-0.038 Sum_probs=48.1
Q ss_pred eeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHH-HHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHh-
Q 017293 202 LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAA-LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKF- 279 (374)
Q Consensus 202 ~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~-~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~- 279 (374)
..+|.++|..|.... .....|...|+.|....+..-+. .+.+..+|.||+..+- .+ .-|.-.+..+-+.
T Consensus 3 ~~~ILivdd~~~~~~--~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dliild~~l--~~-----~~g~~~~~~l~~~~ 73 (155)
T 1qkk_A 3 APSVFLIDDDRDLRK--AMQQTLELAGFTVSSFASATEALAGLSADFAGIVISDIRM--PG-----MDGLALFRKILALD 73 (155)
T ss_dssp -CEEEEECSCHHHHH--HHHHHHHHTTCEEEEESCHHHHHHTCCTTCCSEEEEESCC--SS-----SCHHHHHHHHHHHC
T ss_pred CCEEEEEeCCHHHHH--HHHHHHHHcCcEEEEECCHHHHHHHHHhCCCCEEEEeCCC--CC-----CCHHHHHHHHHhhC
Confidence 457888887775432 23556888899888776644332 2344568988887642 22 2233333333333
Q ss_pred cCCeEEEeccCc
Q 017293 280 HNILFYVAAPLT 291 (374)
Q Consensus 280 ~~vPvyV~a~~~ 291 (374)
.++|+++++...
T Consensus 74 ~~~pii~ls~~~ 85 (155)
T 1qkk_A 74 PDLPMILVTGHG 85 (155)
T ss_dssp TTSCEEEEECGG
T ss_pred CCCCEEEEECCC
Confidence 479999987643
No 182
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=24.64 E-value=1.4e+02 Score=27.37 Aligned_cols=78 Identities=13% Similarity=0.037 Sum_probs=38.8
Q ss_pred eEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchH------HHHHHhc--CCCCEEEEcceeeecCCCeecccccHHHH
Q 017293 203 ERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSA------AAALMKD--GRVSAVIVGADRVAANGDTANKIGTYSLA 274 (374)
Q Consensus 203 ~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsa------v~~~m~~--~~vd~VlvGAd~i~~nG~v~nkiGT~~lA 274 (374)
-+|++. .|.+.+... .+...|.++..++-.. +..+++. +++..|++ ..--.+.|.+...-=--.++
T Consensus 99 d~vl~~--~p~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~l~~~~~~~~~~~~~v~i-~~p~nptG~~~~~~~l~~i~ 172 (364)
T 1lc5_A 99 RRAMIV--TPGFAEYGR---ALAQSGCEIRRWSLREADGWQLTDAILEALTPDLDCLFL-CTPNNPTGLLPERPLLQAIA 172 (364)
T ss_dssp SEEEEE--ESCCTHHHH---HHHHTTCEEEEEECCGGGTTCCCTTHHHHCCTTCCEEEE-ESSCTTTCCCCCHHHHHHHH
T ss_pred CeEEEe--CCCcHHHHH---HHHHcCCeEEEEeCCcccccchhHHHHHhccCCCCEEEE-eCCCCCCCCCCCHHHHHHHH
Confidence 355554 366666432 2455688777765321 1112221 45555544 11112234333221123466
Q ss_pred HHHHhcCCeEEE
Q 017293 275 LCAKFHNILFYV 286 (374)
Q Consensus 275 ~~Ak~~~vPvyV 286 (374)
-+|++|++++++
T Consensus 173 ~~~~~~~~~li~ 184 (364)
T 1lc5_A 173 DRCKSLNINLIL 184 (364)
T ss_dssp HHHHHHTCEEEE
T ss_pred HHhhhcCcEEEE
Confidence 788999998887
No 183
>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*
Probab=24.63 E-value=1.8e+02 Score=25.37 Aligned_cols=87 Identities=15% Similarity=0.122 Sum_probs=44.9
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEE--cc-hHHHHHHhcCCCCEEEEcceeeecCCCeeccc
Q 017293 192 VIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLI--AD-SAAAALMKDGRVSAVIVGADRVAANGDTANKI 268 (374)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI--~D-sav~~~m~~~~vd~VlvGAd~i~~nG~v~nki 268 (374)
+.+.+.++....+|+++.-+|.. . .+|...++.+... .| .++..++ .++|.|+--|-.- .+ .|-.
T Consensus 15 l~~~L~~~~~g~~V~~~~r~~~~-~-----~~~~~~~~~~~~~D~~d~~~~~~~~--~~~d~vi~~a~~~-~~---~~~~ 82 (286)
T 2zcu_A 15 VIESLMKTVPASQIVAIVRNPAK-A-----QALAAQGITVRQADYGDEAALTSAL--QGVEKLLLISSSE-VG---QRAP 82 (286)
T ss_dssp HHHHHTTTSCGGGEEEEESCTTT-C-----HHHHHTTCEEEECCTTCHHHHHHHT--TTCSEEEECC------------C
T ss_pred HHHHHHhhCCCceEEEEEcChHh-h-----hhhhcCCCeEEEcCCCCHHHHHHHH--hCCCEEEEeCCCC-ch---HHHH
Confidence 44555554113456665544322 1 1344456543321 12 4456667 6788887654321 11 3667
Q ss_pred ccHHHHHHHHhcCCeEEEeccC
Q 017293 269 GTYSLALCAKFHNILFYVAAPL 290 (374)
Q Consensus 269 GT~~lA~~Ak~~~vPvyV~a~~ 290 (374)
||..+.-+|+..+++-+|...+
T Consensus 83 ~~~~l~~a~~~~~~~~~v~~Ss 104 (286)
T 2zcu_A 83 QHRNVINAAKAAGVKFIAYTSL 104 (286)
T ss_dssp HHHHHHHHHHHHTCCEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEECC
Confidence 8888888888888765555443
No 184
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=24.39 E-value=3.3e+02 Score=25.26 Aligned_cols=95 Identities=14% Similarity=-0.001 Sum_probs=47.9
Q ss_pred HHHHHHHCCCeeEEE-EecCCCCCcchHhHHHHH-hhCCCCeEEEcchHHHHHHhcCCCCEEEEcc--------------
Q 017293 192 VIRALHSEGVLERAY-CSETRPFNQGSRLTAFEL-VHDRIPATLIADSAAAALMKDGRVSAVIVGA-------------- 255 (374)
Q Consensus 192 ~l~~a~~~g~~~~V~-v~EsrP~~eG~~l~a~~L-~~~GI~vtlI~Dsav~~~m~~~~vd~VlvGA-------------- 255 (374)
.++...++...+++. |++..|.. +.++ .+.|+++....| .-.++..+++|.|++..
T Consensus 38 ~~~~l~~~~~~~~lvav~d~~~~~------~~~~a~~~g~~~~~~~~--~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~ 109 (357)
T 3ec7_A 38 HLRRLANTVSGVEVVAVCDIVAGR------AQAALDKYAIEAKDYND--YHDLINDKDVEVVIITASNEAHADVAVAALN 109 (357)
T ss_dssp HHHHHHHTCTTEEEEEEECSSTTH------HHHHHHHHTCCCEEESS--HHHHHHCTTCCEEEECSCGGGHHHHHHHHHH
T ss_pred HHHHHHhhCCCcEEEEEEeCCHHH------HHHHHHHhCCCCeeeCC--HHHHhcCCCCCEEEEcCCcHHHHHHHHHHHH
Confidence 344444233456654 66655432 1222 345776666666 33455557899999854
Q ss_pred ---eeeecCCCeecccccHHHHHHHHhcCCeEEEeccCcccc
Q 017293 256 ---DRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSID 294 (374)
Q Consensus 256 ---d~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~K~~ 294 (374)
+.+++-=-..+--....+.-+|+..|++++.++-.+.|.
T Consensus 110 aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~~v~~~~R~~ 151 (357)
T 3ec7_A 110 ANKYVFCEKPLAVTAADCQRVIEAEQKNGKRMVQIGFMRRYD 151 (357)
T ss_dssp TTCEEEEESSSCSSHHHHHHHHHHHHHHTSCCEEEECGGGGS
T ss_pred CCCCEEeecCccCCHHHHHHHHHHHHHhCCeEEEEeecccCC
Confidence 222222112222333445556777777774333334444
No 185
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}
Probab=24.37 E-value=3.2e+02 Score=24.25 Aligned_cols=99 Identities=13% Similarity=0.055 Sum_probs=53.9
Q ss_pred cEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCC-CC---cchHhHHHHHhhCCCCeEEE--cc-hHHHHH
Q 017293 170 FSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRP-FN---QGSRLTAFELVHDRIPATLI--AD-SAAAAL 242 (374)
Q Consensus 170 ~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP-~~---eG~~l~a~~L~~~GI~vtlI--~D-sav~~~ 242 (374)
.+||..+-+|.+ | ..+++.+.++|. +|+++--+| .. +..+. ..+|...|+.+... .| .++..+
T Consensus 5 ~~ilVtGatG~i-----G--~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~~~~-l~~~~~~~v~~v~~D~~d~~~l~~a 74 (321)
T 3c1o_A 5 EKIIIYGGTGYI-----G--KFMVRASLSFSH--PTFIYARPLTPDSTPSSVQL-REEFRSMGVTIIEGEMEEHEKMVSV 74 (321)
T ss_dssp CCEEEETTTSTT-----H--HHHHHHHHHTTC--CEEEEECCCCTTCCHHHHHH-HHHHHHTTCEEEECCTTCHHHHHHH
T ss_pred cEEEEEcCCchh-----H--HHHHHHHHhCCC--cEEEEECCcccccChHHHHH-HHHhhcCCcEEEEecCCCHHHHHHH
Confidence 346666655533 2 234455556664 455554333 11 11111 12355677655432 22 345666
Q ss_pred HhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcC-CeEEEe
Q 017293 243 MKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHN-ILFYVA 287 (374)
Q Consensus 243 m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~-vPvyV~ 287 (374)
+ ..+|.|+.-| +..+-.++..+.-+|+..+ ++-+|.
T Consensus 75 ~--~~~d~vi~~a-------~~~~~~~~~~l~~aa~~~g~v~~~v~ 111 (321)
T 3c1o_A 75 L--KQVDIVISAL-------PFPMISSQIHIINAIKAAGNIKRFLP 111 (321)
T ss_dssp H--TTCSEEEECC-------CGGGSGGGHHHHHHHHHHCCCCEEEC
T ss_pred H--cCCCEEEECC-------CccchhhHHHHHHHHHHhCCccEEec
Confidence 7 6677665543 2233678888888999988 887773
No 186
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=24.34 E-value=1.7e+02 Score=25.33 Aligned_cols=83 Identities=13% Similarity=-0.004 Sum_probs=52.2
Q ss_pred CCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHH-HHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHH
Q 017293 200 GVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAA-LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAK 278 (374)
Q Consensus 200 g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~-~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak 278 (374)
....+|.++|..|.... .....|...|+.|....|..-+. .+.+..+|.||+..+ ++++ -|--.+..+-+
T Consensus 21 ~~~~~ILivdd~~~~~~--~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~--lp~~-----~g~~~~~~lr~ 91 (250)
T 3r0j_A 21 TPEARVLVVDDEANIVE--LLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVX--MPGM-----DGFGVLRRLRA 91 (250)
T ss_dssp CSSCEEEEECSCHHHHH--HHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESC--CSSS-----CHHHHHHHHHH
T ss_pred CCCceEEEEECCHHHHH--HHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEeCC--CCCC-----CHHHHHHHHHh
Confidence 34678999998876532 23556888999988777654432 344567999988543 3432 24333333333
Q ss_pred h-cCCeEEEeccCc
Q 017293 279 F-HNILFYVAAPLT 291 (374)
Q Consensus 279 ~-~~vPvyV~a~~~ 291 (374)
. .++|+++++...
T Consensus 92 ~~~~~~ii~lt~~~ 105 (250)
T 3r0j_A 92 DGIDAPALFLTARD 105 (250)
T ss_dssp TTCCCCEEEEECST
T ss_pred cCCCCCEEEEECCC
Confidence 3 479999987644
No 187
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=24.23 E-value=1.8e+02 Score=23.99 Aligned_cols=81 Identities=4% Similarity=-0.107 Sum_probs=47.1
Q ss_pred eeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHH-HHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHH-h
Q 017293 202 LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAA-LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAK-F 279 (374)
Q Consensus 202 ~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~-~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak-~ 279 (374)
..+|.++|..|.... .....|...|+.|....+..-+. .+.+..+|.||+..+ ++++ -|--.+..+-+ .
T Consensus 4 ~~~ilivdd~~~~~~--~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--lp~~-----~g~~~~~~l~~~~ 74 (208)
T 1yio_A 4 KPTVFVVDDDMSVRE--GLRNLLRSAGFEVETFDCASTFLEHRRPEQHGCLVLDMR--MPGM-----SGIELQEQLTAIS 74 (208)
T ss_dssp CCEEEEECSCHHHHH--HHHHHHHTTTCEEEEESSHHHHHHHCCTTSCEEEEEESC--CSSS-----CHHHHHHHHHHTT
T ss_pred CCEEEEEcCCHHHHH--HHHHHHHhCCceEEEcCCHHHHHHhhhccCCCEEEEeCC--CCCC-----CHHHHHHHHHhcC
Confidence 346788887776522 22456777898888666554333 233456888887543 3332 23333333333 3
Q ss_pred cCCeEEEeccCc
Q 017293 280 HNILFYVAAPLT 291 (374)
Q Consensus 280 ~~vPvyV~a~~~ 291 (374)
.++|+++++...
T Consensus 75 ~~~~ii~ls~~~ 86 (208)
T 1yio_A 75 DGIPIVFITAHG 86 (208)
T ss_dssp CCCCEEEEESCT
T ss_pred CCCCEEEEeCCC
Confidence 479999987643
No 188
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=24.15 E-value=1.6e+02 Score=24.43 Aligned_cols=82 Identities=16% Similarity=0.043 Sum_probs=49.7
Q ss_pred CeeEEEEecCCCCCcchHhHHHHHhhCCCCeE-EEcchHHH-HHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHH
Q 017293 201 VLERAYCSETRPFNQGSRLTAFELVHDRIPAT-LIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAK 278 (374)
Q Consensus 201 ~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vt-lI~Dsav~-~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak 278 (374)
...+|.++|..|.... .....|...|+.+. ...+..-+ ..+.+..+|.||+..+ +++. -|--.+..+-+
T Consensus 12 m~~~iLivdd~~~~~~--~l~~~L~~~g~~v~~~~~~~~~al~~~~~~~~dlvi~D~~--~p~~-----~g~~~~~~l~~ 82 (205)
T 1s8n_A 12 VPRRVLIAEDEALIRM--DLAEMLREEGYEIVGEAGDGQEAVELAELHKPDLVIMDVK--MPRR-----DGIDAASEIAS 82 (205)
T ss_dssp CCCEEEEECSSHHHHH--HHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEESS--CSSS-----CHHHHHHHHHH
T ss_pred CCccEEEEECCHHHHH--HHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCCEEEEeCC--CCCC-----ChHHHHHHHHh
Confidence 3468999998876532 23456788899887 55544332 2344567999988643 2322 24344444555
Q ss_pred hcCCeEEEeccCc
Q 017293 279 FHNILFYVAAPLT 291 (374)
Q Consensus 279 ~~~vPvyV~a~~~ 291 (374)
.+..|+++++...
T Consensus 83 ~~~~pii~lt~~~ 95 (205)
T 1s8n_A 83 KRIAPIVVLTAFS 95 (205)
T ss_dssp TTCSCEEEEEEGG
T ss_pred cCCCCEEEEecCC
Confidence 5567999887543
No 189
>1u2p_A Ptpase, low molecular weight protein-tyrosine- phosphatase; hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 1u2q_A
Probab=24.03 E-value=1.1e+02 Score=25.59 Aligned_cols=78 Identities=14% Similarity=0.102 Sum_probs=46.6
Q ss_pred cEEEEecCCCcccccccccHHHHHHHHHH-CCC--eeEEEEecCCCCCcchH---hHHHHHhhCCCCeEEEcchHH-HHH
Q 017293 170 FSVLTHCNTGSLATAGYGTALGVIRALHS-EGV--LERAYCSETRPFNQGSR---LTAFELVHDRIPATLIADSAA-AAL 242 (374)
Q Consensus 170 ~~ILT~~~sg~lat~g~~tv~~~l~~a~~-~g~--~~~V~v~EsrP~~eG~~---l~a~~L~~~GI~vtlI~Dsav-~~~ 242 (374)
..||-.|-. - ++.|-.+++++++..+ .|. .+.|.-.-+.|+..|.. .+...|.+.||+.. ..=..+ ...
T Consensus 5 ~~VLFVC~g-N--~cRSpmAEal~~~~~~~~gl~~~~~v~SAGt~~~~~G~~~~p~a~~~l~~~Gid~s-~~ar~l~~~~ 80 (163)
T 1u2p_A 5 LHVTFVCTG-N--ICRSPMAEKMFAQQLRHRGLGDAVRVTSAGTGNWHVGSCADERAAGVLRAHGYPTD-HRAAQVGTEH 80 (163)
T ss_dssp EEEEEEESS-S--SSHHHHHHHHHHHHHHHTTCTTTEEEEEEESSCTTTTCCCCHHHHHHHHHTTCCCC-CCCCBCCHHH
T ss_pred CEEEEEcCC-c--HhHHHHHHHHHHHHHHHCCCCCcEEEEecccCCCcCCCCCCHHHHHHHHHcCcCCC-ceeeECChhh
Confidence 467776642 1 1345578888887643 343 58999888888644422 24567899999876 221111 233
Q ss_pred HhcCCCCEEEEc
Q 017293 243 MKDGRVSAVIVG 254 (374)
Q Consensus 243 m~~~~vd~VlvG 254 (374)
+ .. |.||.=
T Consensus 81 ~--~~-DlIi~M 89 (163)
T 1u2p_A 81 L--AA-DLLVAL 89 (163)
T ss_dssp H--TS-SEEEES
T ss_pred c--cC-CEEEEe
Confidence 4 56 777654
No 190
>3r8n_K 30S ribosomal protein S11; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_K 3fih_K* 3iy8_K 3j18_K* 2wwl_K 3oar_K 3oaq_K 3ofb_K 3ofa_K 3ofp_K 3ofx_K 3ofy_K 3ofo_K 3r8o_K 4a2i_K 4gd1_K 4gd2_K 3i1m_K 1vs7_K* 3e1a_C ...
Probab=23.99 E-value=78 Score=25.46 Aligned_cols=46 Identities=22% Similarity=0.147 Sum_probs=30.9
Q ss_pred HHHHHHHHHHCCC-eeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcch
Q 017293 189 ALGVIRALHSEGV-LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADS 237 (374)
Q Consensus 189 v~~~l~~a~~~g~-~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Ds 237 (374)
+..+.+.+.+.|. .++|++--.-| |++-..+.|...|+.+..|.|.
T Consensus 55 a~~~~~~~~~~Gi~~v~v~vkG~G~---Gr~~airaL~~~Gl~I~~I~Dv 101 (117)
T 3r8n_K 55 AERCADAVKEYGIKNLEVMVKGPGP---GRESTIRALNAAGFRITNITDV 101 (117)
T ss_dssp HHHHHHHHTTSCCCEEEEEEECSSS---STTHHHHHHHHTTCEEEEEEEC
T ss_pred HHHHHHHHHHhCCcEEEEEEeCCCc---cHHHHHHHHHhCCCEEEEEEEe
Confidence 3445566666774 57787754333 4444456789999999999984
No 191
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=23.98 E-value=43 Score=27.86 Aligned_cols=77 Identities=10% Similarity=-0.063 Sum_probs=47.1
Q ss_pred CeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHh-
Q 017293 201 VLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKF- 279 (374)
Q Consensus 201 ~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~- 279 (374)
+..+|.++|..|.... .....|...|+.+....++.-+ + ...+|.||+..+ +++. + |. ....+.+.
T Consensus 11 ~~~~iLivdd~~~~~~--~l~~~L~~~g~~v~~~~~~~~a--l-~~~~dlvl~D~~--mp~~---~--g~-l~~~~~~~~ 77 (196)
T 1qo0_D 11 RELQVLVLNPPGEVSD--ALVLQLIRIGCSVRQCWPPPEA--F-DVPVDVVFTSIF--QNRH---H--DE-IAALLAAGT 77 (196)
T ss_dssp GGCEEEEESCTTHHHH--HHHHHHHHHTCEEEEECSCCSS--C-SSCCSEEEEECC--SSTH---H--HH-HHHHHHHSC
T ss_pred cCCeEEEEcCChhHHH--HHHHHHHHcCCeEEEecCchhh--C-CCCCCEEEEeCC--CCcc---c--hH-HHHHHhccC
Confidence 3567888888776422 2345577778888877665432 2 357898888543 3321 1 44 33344444
Q ss_pred cCCeEEEeccC
Q 017293 280 HNILFYVAAPL 290 (374)
Q Consensus 280 ~~vPvyV~a~~ 290 (374)
..+|+++++..
T Consensus 78 ~~~~ii~lt~~ 88 (196)
T 1qo0_D 78 PRTTLVALVEY 88 (196)
T ss_dssp TTCEEEEEECC
T ss_pred CCCCEEEEEcC
Confidence 57999998764
No 192
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=23.95 E-value=1.8e+02 Score=24.38 Aligned_cols=75 Identities=15% Similarity=0.061 Sum_probs=45.2
Q ss_pred EEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHH-HHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhc-C
Q 017293 204 RAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFH-N 281 (374)
Q Consensus 204 ~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~-~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~-~ 281 (374)
+|.++|..|.... .....|...|+.|....+..-+ ..+.+..+|.|| +++. -|--.+..+-+.. +
T Consensus 2 ~ilivdd~~~~~~--~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi------lp~~-----~g~~~~~~lr~~~~~ 68 (223)
T 2hqr_A 2 RVLLIEKNSVLGG--EIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVM------VSDK-----NALSFVSRIKEKHSS 68 (223)
T ss_dssp CEEEECSCHHHHH--HHHHHHGGGTCCEEEESSHHHHHHHHTTSCCSEEE------ECCT-----THHHHHHHHHHHCTT
T ss_pred EEEEEcCCHHHHH--HHHHHHHHCCcEEEEECCHHHHHHHHhcCCCCEEE------eCCC-----CHHHHHHHHHhCCCC
Confidence 4677777775422 2245677889998866665433 234456789888 3332 2433333343335 8
Q ss_pred CeEEEeccCc
Q 017293 282 ILFYVAAPLT 291 (374)
Q Consensus 282 vPvyV~a~~~ 291 (374)
+|+++++...
T Consensus 69 ~~ii~lt~~~ 78 (223)
T 2hqr_A 69 IVVLVSSDNP 78 (223)
T ss_dssp SEEEEEESSC
T ss_pred CcEEEEECCC
Confidence 9999987653
No 193
>3npg_A Uncharacterized DUF364 family protein; protein with unknown function from DUF364 family, structural genomics; 2.70A {Pyrococcus horikoshii}
Probab=23.93 E-value=2e+02 Score=25.96 Aligned_cols=92 Identities=17% Similarity=0.170 Sum_probs=56.3
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCC
Q 017293 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGR 247 (374)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~ 247 (374)
.+..|...++- . .+++...+ + ++|+|.|-.|...|.. ..+|+...+++ ++
T Consensus 115 ~~~kV~vIG~~---------p--~l~~~l~~--~-~~v~V~d~~p~~~~~~--------------~~~~~~e~~~l--~~ 164 (249)
T 3npg_A 115 EIKRIAIIGNM---------P--PVVRTLKE--K-YEVYVFERNMKLWDRD--------------TYSDTLEYHIL--PE 164 (249)
T ss_dssp CCSEEEEESCC---------H--HHHHHHTT--T-SEEEEECCSGGGCCSS--------------EECGGGHHHHG--GG
T ss_pred CCCEEEEECCC---------H--HHHHHHhc--c-CCEEEEECCCcccCCC--------------CCChhHHHhhh--cc
Confidence 44778887652 2 23333332 3 7999999999864431 12565555688 99
Q ss_pred CCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccCccccCCC
Q 017293 248 VSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTL 297 (374)
Q Consensus 248 vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~K~~~~~ 297 (374)
+|.|++-.-++. || |..--+-......+++++.||.-+.|..
T Consensus 165 ~D~v~iTGsTlv-N~-------Ti~~lL~~~~~~~~vvl~GPS~~~~P~~ 206 (249)
T 3npg_A 165 VDGIIASASCIV-NG-------TLDMILDRAKKAKLIVITGPTGQLLPEF 206 (249)
T ss_dssp CSEEEEETTHHH-HT-------CHHHHHHHCSSCSEEEEESGGGCSCGGG
T ss_pred CCEEEEEeeeec-cC-------CHHHHHHhCcccCeEEEEecCchhhHHH
Confidence 999977655543 43 3332222223456889999998887654
No 194
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.84 E-value=91 Score=23.78 Aligned_cols=37 Identities=22% Similarity=0.226 Sum_probs=27.0
Q ss_pred HhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEe
Q 017293 243 MKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (374)
Q Consensus 243 m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~ 287 (374)
++++++.+||+..|+ -+ -+...+--.|+.++||+|..
T Consensus 27 i~~gka~lViiA~D~-~~-------~~~~~i~~~c~~~~ip~~~~ 63 (99)
T 3j21_Z 27 AKTGGAKLIIVAKNA-PK-------EIKDDIYYYAKLSDIPVYEF 63 (99)
T ss_dssp HHHTCCSEEEEECCC-CH-------HHHHHHHHHHHHTTCCEEEE
T ss_pred HHcCCccEEEEeCCC-CH-------HHHHHHHHHHHHcCCCEEEe
Confidence 455899999998882 22 23455566789999999886
No 195
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=23.71 E-value=75 Score=27.89 Aligned_cols=109 Identities=15% Similarity=0.161 Sum_probs=0.0
Q ss_pred EEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHh--------HHHHHhhCCCCeEEEcchHHHHHHh
Q 017293 173 LTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRL--------TAFELVHDRIPATLIADSAAAALMK 244 (374)
Q Consensus 173 LT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l--------~a~~L~~~GI~vtlI~Dsav~~~m~ 244 (374)
+..+-||+.++ |.-+..+++.+.+.|...+|+++++.-..-.. + +...+....+-..+. .+.++=.
T Consensus 10 I~lgiTGs~aa--~~k~~~ll~~L~~~g~eV~vv~T~~A~~~i~~-~~~~~~~~~~l~~l~g~~v~~~~~---~~~hi~~ 83 (201)
T 3lqk_A 10 VGFGLTGSHCT--YHEVLPQMERLVELGAKVTPFVTHTVQTTDTK-FGESSEWINKIKQITEEPIVDSMV---KAEPFGP 83 (201)
T ss_dssp EEEECCSCGGG--GGGTHHHHHHHHHTTCEEEEECSSCSCCTTCC-TTCSCHHHHHHHHHCCSCCBCSHH---HHGGGTT
T ss_pred EEEEEEChHHH--HHHHHHHHHHHhhCCCEEEEEEChhHHHHHHH-hhchhHHHHHHHHHhCCCeEeecC---ccccccc
Q ss_pred cCCCCEEEEcceeeecCCCeecccccHHHHHHHHhc---CCeEEEe
Q 017293 245 DGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFH---NILFYVA 287 (374)
Q Consensus 245 ~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~---~vPvyV~ 287 (374)
.+..|.++|---+.--=+.++|-+.--.+..+|... +.|++++
T Consensus 84 s~~aD~mvIaP~TanTlAkiA~GiaDnLlt~aa~~~Lk~~~plvl~ 129 (201)
T 3lqk_A 84 KTPLDCMVIAPMTGNSTSKFANAMTDSPVLMGAKATLRNGKPVVVG 129 (201)
T ss_dssp TSCCSEEEEEEECHHHHHHHHTTCCCSHHHHHHHHHHHTTCCEEEE
T ss_pred ccccCEEEEccCCHHHHHHHHCcccCcHHHHHHHHHhhcCCCEEEE
No 196
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=23.63 E-value=3.8e+02 Score=23.65 Aligned_cols=111 Identities=21% Similarity=0.129 Sum_probs=62.1
Q ss_pred HHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCCe-eEEE----Eec---CCCCC-----cc---
Q 017293 153 IGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVL-ERAY----CSE---TRPFN-----QG--- 216 (374)
Q Consensus 153 I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~-~~V~----v~E---srP~~-----eG--- 216 (374)
++..+.+.|. +.+|+..+-+| + | -.+++.+...|.. +.++ |.+ .|..+ -|
T Consensus 18 ~g~~~q~~l~------~~~VlvvG~Gg-l-----G--~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~K 83 (251)
T 1zud_1 18 IALDGQQKLL------DSQVLIIGLGG-L-----G--TPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPK 83 (251)
T ss_dssp THHHHHHHHH------TCEEEEECCST-T-----H--HHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBH
T ss_pred cCHHHHHHHh------cCcEEEEccCH-H-----H--HHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHH
Confidence 4666677777 46788877532 2 2 2344555566753 3333 111 22211 02
Q ss_pred hHhHHHHHhh--CCCCeEEEc----chHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEec
Q 017293 217 SRLTAFELVH--DRIPATLIA----DSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAA 288 (374)
Q Consensus 217 ~~l~a~~L~~--~GI~vtlI~----Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a 288 (374)
.+-++..|.+ -+++++.++ +..+..++ .++|.||...|..- .-+.+.-.|+.+++|++.++
T Consensus 84 a~~~~~~l~~~np~~~v~~~~~~~~~~~~~~~~--~~~DvVi~~~d~~~---------~r~~l~~~~~~~~~p~i~~~ 150 (251)
T 1zud_1 84 SQVSQQRLTQLNPDIQLTALQQRLTGEALKDAV--ARADVVLDCTDNMA---------TRQEINAACVALNTPLITAS 150 (251)
T ss_dssp HHHHHHHHHHHCTTSEEEEECSCCCHHHHHHHH--HHCSEEEECCSSHH---------HHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHH--hcCCEEEECCCCHH---------HHHHHHHHHHHhCCCEEEEe
Confidence 1223444554 356666654 23455567 68899987766431 23567778888999988754
No 197
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=23.62 E-value=2e+02 Score=21.73 Aligned_cols=82 Identities=12% Similarity=-0.004 Sum_probs=48.3
Q ss_pred CCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHH-HHhc-CCCCEEEEcceeeecCCCeecccccHHHHHHH
Q 017293 200 GVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAA-LMKD-GRVSAVIVGADRVAANGDTANKIGTYSLALCA 277 (374)
Q Consensus 200 g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~-~m~~-~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~A 277 (374)
....+|.++|..|... +.....|...|+.+....+..-+. .+.+ ...|.||+..+ +.+. -|--.+..+-
T Consensus 13 ~~~~~ilivdd~~~~~--~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~dlvilD~~--l~~~-----~g~~~~~~l~ 83 (138)
T 2b4a_A 13 MQPFRVTLVEDEPSHA--TLIQYHLNQLGAEVTVHPSGSAFFQHRSQLSTCDLLIVSDQ--LVDL-----SIFSLLDIVK 83 (138)
T ss_dssp -CCCEEEEECSCHHHH--HHHHHHHHHTTCEEEEESSHHHHHHTGGGGGSCSEEEEETT--CTTS-----CHHHHHHHHT
T ss_pred CCCCeEEEECCCHHHH--HHHHHHHHHcCCEEEEeCCHHHHHHHHHhCCCCCEEEEeCC--CCCC-----CHHHHHHHHH
Confidence 3456788888877542 223556888899888777654332 3445 57899988653 2221 2322333332
Q ss_pred H-hcCCeEEEec-cC
Q 017293 278 K-FHNILFYVAA-PL 290 (374)
Q Consensus 278 k-~~~vPvyV~a-~~ 290 (374)
+ ..++|+++++ ..
T Consensus 84 ~~~~~~~ii~ls~~~ 98 (138)
T 2b4a_A 84 EQTKQPSVLILTTGR 98 (138)
T ss_dssp TSSSCCEEEEEESCC
T ss_pred hhCCCCCEEEEECCC
Confidence 2 2479999987 53
No 198
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=23.58 E-value=3.5e+02 Score=24.72 Aligned_cols=86 Identities=15% Similarity=0.135 Sum_probs=43.2
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcch-------HHHHHHhcCCCCEEEEcceeeecCCCe
Q 017293 192 VIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADS-------AAAALMKDGRVSAVIVGADRVAANGDT 264 (374)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Ds-------av~~~m~~~~vd~VlvGAd~i~~nG~v 264 (374)
+++.+.+.| -+|++.+ |.+.+.. ..+...|.++..++-. -...+-+ .++..|++.. .--+.|.+
T Consensus 107 ~~~~l~~~g--d~vl~~~--p~~~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~-~~~~~v~i~~-p~nptG~~ 177 (391)
T 3h14_A 107 AFTALFDSG--DRVGIGA--PGYPSYR---QILRALGLVPVDLPTAPENRLQPVPADFAG-LDLAGLMVAS-PANPTGTM 177 (391)
T ss_dssp HHHHHCCTT--CEEEEEE--SCCHHHH---HHHHHTTCEEEEEECCGGGTTSCCHHHHTT-SCCSEEEEES-SCTTTCCC
T ss_pred HHHHhcCCC--CEEEEcC--CCCccHH---HHHHHcCCEEEEeecCcccCCCCCHHHHHh-cCCeEEEECC-CCCCCCcc
Confidence 344443334 3555543 6666643 2355678888777632 1233321 1455554421 11122322
Q ss_pred ecccccHHHHHHHHhcCCeEEE
Q 017293 265 ANKIGTYSLALCAKFHNILFYV 286 (374)
Q Consensus 265 ~nkiGT~~lA~~Ak~~~vPvyV 286 (374)
...---..++-+|++|++++++
T Consensus 178 ~~~~~l~~l~~~~~~~~~~li~ 199 (391)
T 3h14_A 178 LDHAAMGALIEAAQAQGASFIS 199 (391)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCHHHHHHHHHHHHHcCCEEEE
Confidence 2222234466788999998887
No 199
>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*
Probab=23.54 E-value=83 Score=28.68 Aligned_cols=94 Identities=17% Similarity=0.151 Sum_probs=49.7
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEE--cc-hHHHHHHhcCCCCEEEEcceeeec-----CC-
Q 017293 192 VIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLI--AD-SAAAALMKDGRVSAVIVGADRVAA-----NG- 262 (374)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI--~D-sav~~~m~~~~vd~VlvGAd~i~~-----nG- 262 (374)
+.+.+.++|...+|+++.-++....... ..++...++.+... .| .++..++ ..+|.||--|-.... +-
T Consensus 20 l~~~L~~~~~g~~V~~~~r~~~~~~~~~-~~~~~~~~~~~~~~Dl~d~~~~~~~~--~~~d~vih~A~~~~~~~~~~~~~ 96 (348)
T 1oc2_A 20 FVHYVYNNHPDVHVTVLDKLTYAGNKAN-LEAILGDRVELVVGDIADAELVDKLA--AKADAIVHYAAESHNDNSLNDPS 96 (348)
T ss_dssp HHHHHHHHCTTCEEEEEECCCTTCCGGG-TGGGCSSSEEEEECCTTCHHHHHHHH--TTCSEEEECCSCCCHHHHHHCCH
T ss_pred HHHHHHHhCCCCEEEEEeCCCCCCChhH-HhhhccCCeEEEECCCCCHHHHHHHh--hcCCEEEECCcccCccchhhCHH
Confidence 4455555543457777654432211111 11232233332211 12 3456677 778888776633211 10
Q ss_pred --CeecccccHHHHHHHHhcCCeEEEec
Q 017293 263 --DTANKIGTYSLALCAKFHNILFYVAA 288 (374)
Q Consensus 263 --~v~nkiGT~~lA~~Ak~~~vPvyV~a 288 (374)
--+|-.||..+.-+|+.+++.|+.++
T Consensus 97 ~~~~~Nv~g~~~l~~a~~~~~~~~v~~S 124 (348)
T 1oc2_A 97 PFIHTNFIGTYTLLEAARKYDIRFHHVS 124 (348)
T ss_dssp HHHHHHTHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCeEEEec
Confidence 02478899999999999888666554
No 200
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=23.46 E-value=27 Score=27.60 Aligned_cols=33 Identities=12% Similarity=0.093 Sum_probs=23.1
Q ss_pred CCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEe
Q 017293 246 GRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (374)
Q Consensus 246 ~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~ 287 (374)
.++|.|++|-..-+.-. .+--.|..+|+||.|.
T Consensus 52 ~~~DvvLLgPQV~y~~~---------~ik~~~~~~~ipV~vI 84 (108)
T 3nbm_A 52 GVYDLIILAPQVRSYYR---------EMKVDAERLGIQIVAT 84 (108)
T ss_dssp GGCSEEEECGGGGGGHH---------HHHHHHTTTTCEEEEC
T ss_pred cCCCEEEEChHHHHHHH---------HHHHHhhhcCCcEEEe
Confidence 67899999987554322 2334466789999996
No 201
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=23.43 E-value=1.8e+02 Score=30.57 Aligned_cols=86 Identities=5% Similarity=0.017 Sum_probs=54.3
Q ss_pred EEEEecCCC-CC-----cchHhHHHHHhhCCCCeEEEcchHHHHHHhcC--CCCEEEEcceeeecCCCeecccccHHHHH
Q 017293 204 RAYCSETRP-FN-----QGSRLTAFELVHDRIPATLIADSAAAALMKDG--RVSAVIVGADRVAANGDTANKIGTYSLAL 275 (374)
Q Consensus 204 ~V~v~EsrP-~~-----eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~--~vd~VlvGAd~i~~nG~v~nkiGT~~lA~ 275 (374)
+|.|+|..+ .. .+.+..+..|.+.|..|....|..-+..+.+. ++|.||+--+ +++ .-.+.-|-..+..
T Consensus 2 ~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~~~~~~~d~vilDi~--lp~-~~~~~~G~~ll~~ 78 (755)
T 2vyc_A 2 KVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMFSYQ--MEH-PDEHQNVRQLIGK 78 (755)
T ss_dssp EEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTTCCCSEEEEECC--CCS-HHHHHHHHHHHHH
T ss_pred eEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCcEEEEeCC--CCc-ccccccHHHHHHH
Confidence 677788777 43 23455577899999999999988776665433 4899988644 222 1111223333333
Q ss_pred HHHh-cCCeEEEeccCcc
Q 017293 276 CAKF-HNILFYVAAPLTS 292 (374)
Q Consensus 276 ~Ak~-~~vPvyV~a~~~K 292 (374)
+-+. .++||++++....
T Consensus 79 iR~~~~~iPIi~lTa~~~ 96 (755)
T 2vyc_A 79 LHERQQNVPVFLLGDREK 96 (755)
T ss_dssp HHHHSTTCCEEEEECHHH
T ss_pred HHHhCCCCCEEEEecCCc
Confidence 3333 4799999988654
No 202
>2h1q_A Hypothetical protein; ZP_00559375.1, structural genomics, PSI-2, protein structure initiative; 2.01A {Desulfitobacterium hafniense dcb-2} PDB: 3l5o_A
Probab=23.33 E-value=2.4e+02 Score=25.79 Aligned_cols=68 Identities=15% Similarity=0.088 Sum_probs=46.4
Q ss_pred eeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcC
Q 017293 202 LERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHN 281 (374)
Q Consensus 202 ~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~ 281 (374)
.++|+|.|-.|.. | . .+|.+.-+++ +++|.|++-.-++. ||+ =-..+.+ |+ ..
T Consensus 160 ~~~v~V~d~~p~~-g------------~----~p~~~~e~ll--~~aD~viiTGsTlv-N~T-----i~~lL~~-~~-~a 212 (270)
T 2h1q_A 160 ICDLSILEWSPEE-G------------D----YPLPASEFIL--PECDYVYITCASVV-DKT-----LPRLLEL-SR-NA 212 (270)
T ss_dssp TSEEEEEESSCCT-T------------C----EEGGGHHHHG--GGCSEEEEETHHHH-HTC-----HHHHHHH-TT-TS
T ss_pred CCCEEEEECCCCC-C------------C----CChHHHHHHh--hcCCEEEEEeeeee-cCC-----HHHHHHh-Cc-cC
Confidence 4688889988862 3 1 3788888899 99999987665553 442 2223333 33 56
Q ss_pred CeEEEeccCccccCC
Q 017293 282 ILFYVAAPLTSIDLT 296 (374)
Q Consensus 282 vPvyV~a~~~K~~~~ 296 (374)
.+++++.||.-+.|.
T Consensus 213 ~~vvl~GPS~p~~P~ 227 (270)
T 2h1q_A 213 RRITLVGPGTPLAPV 227 (270)
T ss_dssp SEEEEESTTCCCCGG
T ss_pred CeEEEEecChhhhHH
Confidence 799999999776653
No 203
>1ex2_A Protein MAF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: SUC PO4; 1.85A {Bacillus subtilis} SCOP: c.51.4.2 PDB: 1exc_A*
Probab=23.30 E-value=2.4e+02 Score=24.33 Aligned_cols=38 Identities=18% Similarity=0.310 Sum_probs=30.6
Q ss_pred EEEcceeeec-CCCeecccccHHHH--HHHHhcCCeEEEec
Q 017293 251 VIVGADRVAA-NGDTANKIGTYSLA--LCAKFHNILFYVAA 288 (374)
Q Consensus 251 VlvGAd~i~~-nG~v~nkiGT~~lA--~~Ak~~~vPvyV~a 288 (374)
+|+|||.|+. ||.++.|=.+..-| ++.+..|...-|.+
T Consensus 65 ~VigaDTvV~~~g~ilgKP~~~~eA~~mL~~lsG~~h~v~T 105 (189)
T 1ex2_A 65 IVIGADTMVCLDGECLGKPQDQEEAASMLRRLSGRSHSVIT 105 (189)
T ss_dssp EEEEEEEEEEETTEEECCCSSHHHHHHHHHHHTTSEEEEEE
T ss_pred eEEEeCeEEEECCEEcCCCCCHHHHHHHHHHhCCCcEEEEE
Confidence 7999999987 88899999999876 46666677766544
No 204
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=23.22 E-value=2e+02 Score=26.19 Aligned_cols=85 Identities=11% Similarity=0.045 Sum_probs=41.8
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcch------------HHHHHHhcCCCCEEEEcceeee
Q 017293 192 VIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADS------------AAAALMKDGRVSAVIVGADRVA 259 (374)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Ds------------av~~~m~~~~vd~VlvGAd~i~ 259 (374)
+++.+.+.| -+|++.+ |.+.+... .+...|.++..++-. .+-..+ .+ .++++=..--.
T Consensus 106 ~~~~~~~~g--d~vl~~~--~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l--~~-~~~v~i~~p~n 175 (391)
T 4dq6_A 106 LINELTKAN--DKIMIQE--PVYSPFNS---VVKNNNRELIISPLQKLENGNYIMDYEDIENKI--KD-VKLFILCNPHN 175 (391)
T ss_dssp HHHHHSCTT--CEEEECS--SCCTHHHH---HHHHTTCEEEECCCEECTTSCEECCHHHHHHHC--TT-EEEEEEESSBT
T ss_pred HHHHhCCCC--CEEEEcC--CCCHHHHH---HHHHcCCeEEeeeeeecCCCceEeeHHHHHHHh--hc-CCEEEEECCCC
Confidence 444443333 3555543 77766533 345668776665421 233334 23 33332121111
Q ss_pred cCCCeecccccHHHHHHHHhcCCeEEE
Q 017293 260 ANGDTANKIGTYSLALCAKFHNILFYV 286 (374)
Q Consensus 260 ~nG~v~nkiGT~~lA~~Ak~~~vPvyV 286 (374)
+.|.++..---..++-+|++|++++++
T Consensus 176 ptG~~~~~~~l~~i~~~~~~~~~~li~ 202 (391)
T 4dq6_A 176 PVGRVWTKDELKKLGDICLKHNVKIIS 202 (391)
T ss_dssp TTTBCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCcCcCHHHHHHHHHHHHHcCCEEEe
Confidence 233333322233566679999999887
No 205
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=23.21 E-value=2.9e+02 Score=26.72 Aligned_cols=90 Identities=12% Similarity=0.078 Sum_probs=49.5
Q ss_pred HHHHHHHHCCCeeEEEEecCCCCCcchH-hH-------HHHHhhCCCCeEEEcc--------hHHHHHHhc-CCCCEEEE
Q 017293 191 GVIRALHSEGVLERAYCSETRPFNQGSR-LT-------AFELVHDRIPATLIAD--------SAAAALMKD-GRVSAVIV 253 (374)
Q Consensus 191 ~~l~~a~~~g~~~~V~v~EsrP~~eG~~-l~-------a~~L~~~GI~vtlI~D--------sav~~~m~~-~~vd~Vlv 253 (374)
.++....+.| -+|++.+. |.+.+.. +. ...+...|+.++.++- ..+-..+++ ++...|++
T Consensus 106 ~al~all~pG--D~Vl~~~~-~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~~~tklV~i 182 (427)
T 3i16_A 106 AALFGNLRPG--NTMLSVCG-EPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKEDESITLVHI 182 (427)
T ss_dssp HHHHHHCCTT--CEEEESSS-SCCGGGHHHHTCSCCCSSCCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTCTTEEEEEE
T ss_pred HHHHHHhCCC--CEEEEeCC-CccHHHHHHHhccccchHHHHHHcCCEEEEecCccCCCcCHHHHHHHhhCCCCCEEEEE
Confidence 3444444444 36666653 4444432 21 0235567998888753 344445532 45555544
Q ss_pred cceeeecCCCeecccccH----HHHHHHHh--cCCeEEEe
Q 017293 254 GADRVAANGDTANKIGTY----SLALCAKF--HNILFYVA 287 (374)
Q Consensus 254 GAd~i~~nG~v~nkiGT~----~lA~~Ak~--~~vPvyV~ 287 (374)
... -|...|..|+. .++-+|+. ++++++|=
T Consensus 183 ~~s----~~~p~nptg~i~dl~~i~~la~~~~~g~~livD 218 (427)
T 3i16_A 183 QRS----TGYGWRRALLIEDIKSIVDCVKNIRKDIICFVD 218 (427)
T ss_dssp ECS----CCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred EcC----CCCCCCCcccHHHHHHHHHHHHHhCCCCEEEEE
Confidence 321 23356677763 46677888 99998873
No 206
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=23.18 E-value=3.1e+02 Score=22.42 Aligned_cols=38 Identities=16% Similarity=0.073 Sum_probs=26.1
Q ss_pred CCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccC
Q 017293 246 GRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPL 290 (374)
Q Consensus 246 ~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~ 290 (374)
.+=|.||+ +...|. ..-+..++-.||..|.|++.++..
T Consensus 109 ~~~Dvvi~----iS~sG~---t~~~~~~~~~ak~~g~~vi~iT~~ 146 (188)
T 1tk9_A 109 NEKDVLIG----ISTSGK---SPNVLEALKKAKELNMLCLGLSGK 146 (188)
T ss_dssp CTTCEEEE----ECSSSC---CHHHHHHHHHHHHTTCEEEEEEEG
T ss_pred CCCCEEEE----EeCCCC---CHHHHHHHHHHHHCCCEEEEEeCC
Confidence 55566654 334553 344677788999999999988653
No 207
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=23.13 E-value=1e+02 Score=27.68 Aligned_cols=99 Identities=19% Similarity=0.076 Sum_probs=53.1
Q ss_pred EEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEc--chHHHHHHhcCCC
Q 017293 171 SVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIA--DSAAAALMKDGRV 248 (374)
Q Consensus 171 ~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~--Dsav~~~m~~~~v 248 (374)
+||..+-+|.+ | ..+++.+.++|. +|+++.-+|... . |. ++.+...- ...+..++ .++
T Consensus 4 ~vlVtGatG~i-----G--~~l~~~L~~~g~--~V~~~~r~~~~~------~-~~--~~~~~~~Dl~~~~~~~~~--~~~ 63 (311)
T 3m2p_A 4 KIAVTGGTGFL-----G--QYVVESIKNDGN--TPIILTRSIGNK------A-IN--DYEYRVSDYTLEDLINQL--NDV 63 (311)
T ss_dssp EEEEETTTSHH-----H--HHHHHHHHHTTC--EEEEEESCCC--------------CCEEEECCCCHHHHHHHT--TTC
T ss_pred EEEEECCCcHH-----H--HHHHHHHHhCCC--EEEEEeCCCCcc------c-CC--ceEEEEccccHHHHHHhh--cCC
Confidence 56666555432 1 234556666664 566665442211 1 22 44332211 23455566 688
Q ss_pred CEEEEcceeeecC----CCeecccccHHHHHHHHhcCCeEEEecc
Q 017293 249 SAVIVGADRVAAN----GDTANKIGTYSLALCAKFHNILFYVAAP 289 (374)
Q Consensus 249 d~VlvGAd~i~~n----G~v~nkiGT~~lA~~Ak~~~vPvyV~a~ 289 (374)
|.||--|-....+ ---.|-.||..+.-+|+..+++-+|...
T Consensus 64 d~Vih~a~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~S 108 (311)
T 3m2p_A 64 DAVVHLAATRGSQGKISEFHDNEILTQNLYDACYENNISNIVYAS 108 (311)
T ss_dssp SEEEECCCCCCSSSCGGGTHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CEEEEccccCCCCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEc
Confidence 8887655432211 0125778999999999999998444433
No 208
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=22.98 E-value=1.3e+02 Score=25.32 Aligned_cols=88 Identities=10% Similarity=0.012 Sum_probs=51.1
Q ss_pred HHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEE--cchHHHHHHhcCCCCEEEEcceeee-cCCCeecc
Q 017293 191 GVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLI--ADSAAAALMKDGRVSAVIVGADRVA-ANGDTANK 267 (374)
Q Consensus 191 ~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI--~Dsav~~~m~~~~vd~VlvGAd~i~-~nG~v~nk 267 (374)
.+.+.+.++|. +|+++.-+| .+ ..+|...++.+... .|... ..+ .++|.||--|-... ..-.-.|-
T Consensus 15 ~l~~~L~~~g~--~V~~~~R~~----~~--~~~~~~~~~~~~~~D~~d~~~-~~~--~~~d~vi~~ag~~~~~~~~~~n~ 83 (224)
T 3h2s_A 15 AIVAEARRRGH--EVLAVVRDP----QK--AADRLGATVATLVKEPLVLTE-ADL--DSVDAVVDALSVPWGSGRGYLHL 83 (224)
T ss_dssp HHHHHHHHTTC--EEEEEESCH----HH--HHHHTCTTSEEEECCGGGCCH-HHH--TTCSEEEECCCCCTTSSCTHHHH
T ss_pred HHHHHHHHCCC--EEEEEEecc----cc--cccccCCCceEEecccccccH-hhc--ccCCEEEECCccCCCcchhhHHH
Confidence 35566666674 566554332 12 23455556544322 22222 556 78888876663321 11223588
Q ss_pred cccHHHHHHHHhcCCeEEEecc
Q 017293 268 IGTYSLALCAKFHNILFYVAAP 289 (374)
Q Consensus 268 iGT~~lA~~Ak~~~vPvyV~a~ 289 (374)
.|+..+.-+|+..+..|+.++.
T Consensus 84 ~~~~~l~~a~~~~~~~~v~~SS 105 (224)
T 3h2s_A 84 DFATHLVSLLRNSDTLAVFILG 105 (224)
T ss_dssp HHHHHHHHTCTTCCCEEEEECC
T ss_pred HHHHHHHHHHHHcCCcEEEEec
Confidence 8999999999999977777653
No 209
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=22.85 E-value=1.3e+02 Score=27.47 Aligned_cols=61 Identities=21% Similarity=0.257 Sum_probs=39.2
Q ss_pred HHHCCCeeEEEEecCCCCCcchHhHHHH-HhhCCCCeEEEcchHH---HHHHhcCCCCEEEEcceee
Q 017293 196 LHSEGVLERAYCSETRPFNQGSRLTAFE-LVHDRIPATLIADSAA---AALMKDGRVSAVIVGADRV 258 (374)
Q Consensus 196 a~~~g~~~~V~v~EsrP~~eG~~l~a~~-L~~~GI~vtlI~Dsav---~~~m~~~~vd~VlvGAd~i 258 (374)
|.+.+.+|.+|+.- .|..-|-.- |+| |++.||||.+|.|.-. ---|.....-.+|+-+|..
T Consensus 60 ~~~~~pDfvI~isP-N~a~PGP~~-ARE~l~~~~iP~IvI~D~p~~K~kd~l~~~g~GYIivk~DpM 124 (283)
T 1qv9_A 60 AEDFEPDFIVYGGP-NPAAPGPSK-AREMLADSEYPAVIIGDAPGLKVKDEMEEQGLGYILVKPDAM 124 (283)
T ss_dssp HHHHCCSEEEEECS-CTTSHHHHH-HHHHHHTSSSCEEEEEEGGGGGGHHHHHHTTCEEEEETTSCC
T ss_pred hhhcCCCEEEEECC-CCCCCCchH-HHHHHHhCCCCEEEEcCCcchhhHHHHHhcCCcEEEEecCcc
Confidence 35667888877753 344556543 444 6789999999999752 2334555666666665554
No 210
>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Probab=22.72 E-value=3e+02 Score=23.11 Aligned_cols=106 Identities=14% Similarity=0.045 Sum_probs=58.9
Q ss_pred CcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEE--cc-hHHHHHHhc
Q 017293 169 KFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLI--AD-SAAAALMKD 245 (374)
Q Consensus 169 ~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI--~D-sav~~~m~~ 245 (374)
+.+||..+-+|.+ | ..+.+.+.++|...+|+++..+|. ++ .++ ..++.+... .| ..+..++
T Consensus 4 ~~~ilVtGasG~i-----G--~~l~~~l~~~~~g~~V~~~~r~~~----~~--~~~-~~~~~~~~~D~~d~~~~~~~~-- 67 (253)
T 1xq6_A 4 LPTVLVTGASGRT-----G--QIVYKKLKEGSDKFVAKGLVRSAQ----GK--EKI-GGEADVFIGDITDADSINPAF-- 67 (253)
T ss_dssp CCEEEEESTTSHH-----H--HHHHHHHHHTTTTCEEEEEESCHH----HH--HHT-TCCTTEEECCTTSHHHHHHHH--
T ss_pred CCEEEEEcCCcHH-----H--HHHHHHHHhcCCCcEEEEEEcCCC----ch--hhc-CCCeeEEEecCCCHHHHHHHH--
Confidence 4566666555422 2 345566666643456776654331 11 223 334443221 22 4566777
Q ss_pred CCCCEEEEcceeeecCC-----------C----------eecccccHHHHHHHHhcCCeEEEeccC
Q 017293 246 GRVSAVIVGADRVAANG-----------D----------TANKIGTYSLALCAKFHNILFYVAAPL 290 (374)
Q Consensus 246 ~~vd~VlvGAd~i~~nG-----------~----------v~nkiGT~~lA~~Ak~~~vPvyV~a~~ 290 (374)
.++|.||--|-.....+ . -+|-.|+..+.-+|+.++++-+|...+
T Consensus 68 ~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS 133 (253)
T 1xq6_A 68 QGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGS 133 (253)
T ss_dssp TTCSEEEECCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEE
T ss_pred cCCCEEEEeccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCCCEEEEEcC
Confidence 78999887664321100 0 257789999999999888865554433
No 211
>2z1d_A Hydrogenase expression/formation protein HYPD; [NIFE] hydrogenase maturation, [4Fe-4S] cluster, thiol redox binding protein; HET: CSW; 2.07A {Thermococcus kodakarensis}
Probab=22.72 E-value=77 Score=30.65 Aligned_cols=49 Identities=22% Similarity=0.233 Sum_probs=39.7
Q ss_pred EcchHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEec
Q 017293 234 IADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAA 288 (374)
Q Consensus 234 I~Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a 288 (374)
.+-.++.++|++++ .-|+...=|+|..-+|+-.---+|++|++|++|..
T Consensus 179 l~pPa~~all~~~~------~idgfi~PGHVstIiG~~~y~~l~~~y~~P~VVaG 227 (372)
T 2z1d_A 179 LTPPAVEVLLKQGT------VFQGLIAPGHVSTIIGVKGWEYLTEKYGIPQVVAG 227 (372)
T ss_dssp CHHHHHHHHHHTSC------CCSEEEEEHHHHHHHTTHHHHHHHHHHCCCEEEEC
T ss_pred ccHHHHHHHHcCCC------cCcEEEecCeeeEEeccchhHHHHHHcCCCEEEcC
Confidence 34567888885553 45667778999999999999999999999999863
No 212
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=22.59 E-value=1.9e+02 Score=21.75 Aligned_cols=79 Identities=11% Similarity=0.015 Sum_probs=46.8
Q ss_pred eEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHH-HHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHH-hc
Q 017293 203 ERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAK-FH 280 (374)
Q Consensus 203 ~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~-~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak-~~ 280 (374)
.+|.++|..|.... .....|...|+.+....+..-+ ..+.+...|.||+..+- ++. -|--.+..+.+ ..
T Consensus 4 ~~Ilivdd~~~~~~--~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~l--~~~-----~g~~~~~~l~~~~~ 74 (132)
T 3crn_A 4 KRILIVDDDTAILD--STKQILEFEGYEVEIAATAGEGLAKIENEFFNLALFXIKL--PDM-----EGTELLEKAHKLRP 74 (132)
T ss_dssp CEEEEECSCHHHHH--HHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSBC--SSS-----BHHHHHHHHHHHCT
T ss_pred cEEEEEeCCHHHHH--HHHHHHHHCCceEEEeCCHHHHHHHHhcCCCCEEEEecCC--CCC-----chHHHHHHHHhhCC
Confidence 46888887776532 2244577789888866654332 23445678999886542 321 23333333333 35
Q ss_pred CCeEEEeccC
Q 017293 281 NILFYVAAPL 290 (374)
Q Consensus 281 ~vPvyV~a~~ 290 (374)
++|+++++..
T Consensus 75 ~~~ii~~s~~ 84 (132)
T 3crn_A 75 GMKKIMVTGY 84 (132)
T ss_dssp TSEEEEEESC
T ss_pred CCcEEEEecc
Confidence 7999988654
No 213
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=22.57 E-value=4.5e+02 Score=24.05 Aligned_cols=23 Identities=9% Similarity=-0.021 Sum_probs=16.7
Q ss_pred eeccccc--------HHHHHHHHhcCCeEEE
Q 017293 264 TANKIGT--------YSLALCAKFHNILFYV 286 (374)
Q Consensus 264 v~nkiGT--------~~lA~~Ak~~~vPvyV 286 (374)
.-|..|+ -.++-+|++||+++++
T Consensus 192 ~~nptG~~~~~~~~l~~l~~l~~~~~~~li~ 222 (397)
T 2ord_A 192 IQGESGIVPATKEFLEEARKLCDEYDALLVF 222 (397)
T ss_dssp EECTTTCEECCHHHHHHHHHHHHHHTCEEEE
T ss_pred ccCCCCcccCCHHHHHHHHHHHHHcCCEEEE
Confidence 4555565 4566788999998886
No 214
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=22.52 E-value=2.5e+02 Score=25.55 Aligned_cols=82 Identities=7% Similarity=0.085 Sum_probs=44.0
Q ss_pred HHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEc-ch-HHHHHHhcCCCCEEEEcceeeecCCCeecccc
Q 017293 192 VIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIA-DS-AAAALMKDGRVSAVIVGADRVAANGDTANKIG 269 (374)
Q Consensus 192 ~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~-Ds-av~~~m~~~~vd~VlvGAd~i~~nG~v~nkiG 269 (374)
+++.+.+.| -+|++.+ |.+.+... .+...|.++..++ |- .+-..+. +++..|++ ..---+.|.+...-
T Consensus 105 ~~~~~~~~g--d~vl~~~--p~~~~~~~---~~~~~g~~~~~v~~d~~~l~~~l~-~~~~~v~~-~~p~nptG~~~~~~- 174 (370)
T 2z61_A 105 ALSSIIDDG--DEVLIQN--PCYPCYKN---FIRFLGAKPVFCDFTVESLEEALS-DKTKAIII-NSPSNPLGEVIDRE- 174 (370)
T ss_dssp HHHHHCCTT--CEEEEES--SCCTHHHH---HHHHTTCEEEEECSSHHHHHHHCC-SSEEEEEE-ESSCTTTCCCCCHH-
T ss_pred HHHHhcCCC--CEEEEeC--CCchhHHH---HHHHcCCEEEEeCCCHHHHHHhcc-cCceEEEE-cCCCCCcCcccCHH-
Confidence 444443334 3565554 66666432 3456788888775 32 2223331 34444544 22112345555443
Q ss_pred cHHHHHHHHhcCCeEEE
Q 017293 270 TYSLALCAKFHNILFYV 286 (374)
Q Consensus 270 T~~lA~~Ak~~~vPvyV 286 (374)
++-+|++|++++++
T Consensus 175 ---l~~~~~~~~~~li~ 188 (370)
T 2z61_A 175 ---IYEFAYENIPYIIS 188 (370)
T ss_dssp ---HHHHHHHHCSEEEE
T ss_pred ---HHHHHHHcCCEEEE
Confidence 77889999998776
No 215
>3rss_A Putative uncharacterized protein; unknown function, ADP/ATP-dependent NAD(P)H-hydrate dehydrat lyase; HET: NAP; 1.95A {Thermotoga maritima} PDB: 3rrb_A* 2ax3_A* 3rre_A* 3rrj_A* 3rs8_A* 3rs9_A* 3rsf_A* 3rsg_A* 3rrf_A* 3rsq_A* 3rt7_A* 3rt9_A* 3rta_A* 3rtb_A* 3rtc_A* 3rtd_A* 3rte_A* 3rtg_A* 3ru2_A* 3ru3_A*
Probab=22.30 E-value=5.8e+02 Score=25.30 Aligned_cols=105 Identities=11% Similarity=0.089 Sum_probs=54.8
Q ss_pred CcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCCC
Q 017293 169 KFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRV 248 (374)
Q Consensus 169 ~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~v 248 (374)
+..|+..|-+|--- |-.+-+=|++++.|.+.+||..-.. ..+-.+.....+.+.|+++. .+ ...... ...
T Consensus 52 ~~~v~VlcG~GNNG----GDGlv~AR~L~~~G~~V~v~~~~~~-~~~~~~~~~~~~~~~g~~~~--~~-~~~~~~--~~~ 121 (502)
T 3rss_A 52 DYRFLVLCGGGNNG----GDGFVVARNLLGVVKDVLVVFLGKK-KTPDCEYNYGLYKKFGGKVV--EQ-FEPSIL--NEF 121 (502)
T ss_dssp TCEEEEEECSSHHH----HHHHHHHHHHTTTSSEEEEEECCSS-CCHHHHHHHHHHHHTTCCEE--SC-CCGGGG--GGC
T ss_pred CCEEEEEECCCCCH----HHHHHHHHHHHHCCCeEEEEEECCC-CCHHHHHHHHHHHhCCCcee--cc-cccccC--CCC
Confidence 46788887543210 1223334778888988888877543 32222222235678899875 11 111123 457
Q ss_pred CEEEEcceeeecCCCeecccccHHHHH-HHHhcCCeEEE
Q 017293 249 SAVIVGADRVAANGDTANKIGTYSLAL-CAKFHNILFYV 286 (374)
Q Consensus 249 d~VlvGAd~i~~nG~v~nkiGT~~lA~-~Ak~~~vPvyV 286 (374)
|.|| |+++--|--=.--|.+.-.+ ..+..+.||+.
T Consensus 122 dliV---DalfG~Gl~~~l~~~~~~~i~~iN~~~~~vvA 157 (502)
T 3rss_A 122 DVVV---DAIFGTGLRGEITGEYAEIINLVNKSGKVVVS 157 (502)
T ss_dssp SEEE---EESCSTTCCSCCCHHHHHHHHHHHTTCCEEEE
T ss_pred CEEE---EeCccCCCCCCCcHHHHHHHHHHHcCCCCEEE
Confidence 7664 77886653112223333222 34556777764
No 216
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*
Probab=22.26 E-value=4.8e+02 Score=24.33 Aligned_cols=110 Identities=12% Similarity=0.051 Sum_probs=62.7
Q ss_pred HHHHHHHHhHhhhcCCCcEEEEecCCCcccccccccHHHHHHHHHHCCC-eeEEE----EecC---CCCC-----cc---
Q 017293 153 IGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGV-LERAY----CSET---RPFN-----QG--- 216 (374)
Q Consensus 153 I~~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~-~~~V~----v~Es---rP~~-----eG--- 216 (374)
++..+.+.|. +..|+..+-+ . .--.+++.+...|. .++++ |.++ |..+ -|
T Consensus 26 ~G~~~q~~L~------~~~VlivG~G-G-------lG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~K 91 (346)
T 1y8q_A 26 WGLEAQKRLR------ASRVLLVGLK-G-------LGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNR 91 (346)
T ss_dssp HCHHHHHHHH------TCEEEEECCS-H-------HHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBH
T ss_pred hCHHHHHHHh------CCeEEEECCC-H-------HHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccCcCCH
Confidence 4666777787 4677777643 2 22334455555575 34444 1221 2111 02
Q ss_pred hHhHHHHHhhC--CCCeEEEcchH---HHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEe
Q 017293 217 SRLTAFELVHD--RIPATLIADSA---AAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (374)
Q Consensus 217 ~~l~a~~L~~~--GI~vtlI~Dsa---v~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~ 287 (374)
+..++..|.+. +++++.++..- ...++ .+.|.||.+.|.. ---+.+.-.|+.+++|++.+
T Consensus 92 a~~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~--~~~dvVv~~~d~~---------~~r~~ln~~~~~~~ip~i~~ 156 (346)
T 1y8q_A 92 AEASLERAQNLNPMVDVKVDTEDIEKKPESFF--TQFDAVCLTCCSR---------DVIVKVDQICHKNSIKFFTG 156 (346)
T ss_dssp HHHHHHHHHHTCTTSEEEEECSCGGGCCHHHH--TTCSEEEEESCCH---------HHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHhHCCCeEEEEEecccCcchHHHh--cCCCEEEEcCCCH---------HHHHHHHHHHHHcCCCEEEE
Confidence 22234556654 57777765432 34566 7899998776543 22345677899999999975
No 217
>3o6p_A Peptide ABC transporter, peptide-binding protein; structural genomics, PSI-2, protein structure initiative; 1.65A {Enterococcus faecalis}
Probab=22.22 E-value=1.1e+02 Score=26.26 Aligned_cols=66 Identities=14% Similarity=0.062 Sum_probs=38.2
Q ss_pred HHHHHHHH-HHCCC---eeEEEEecCCCCCcchHhHHHHHhh-C-CCCeEEEcchH--HHHHHhcCCCCEEEEc
Q 017293 189 ALGVIRAL-HSEGV---LERAYCSETRPFNQGSRLTAFELVH-D-RIPATLIADSA--AAALMKDGRVSAVIVG 254 (374)
Q Consensus 189 v~~~l~~a-~~~g~---~~~V~v~EsrP~~eG~~l~a~~L~~-~-GI~vtlI~Dsa--v~~~m~~~~vd~VlvG 254 (374)
+.++|..| +..|. .+++.+..+....+-....+..|.+ . ||+|++..-.. ....+..++.|+++.|
T Consensus 83 Ak~LL~eaG~~~g~~~l~l~l~~~~~~~~~~~a~~i~~~l~~~i~GI~v~i~~~~~~~~~~~~~~g~~d~~~~~ 156 (229)
T 3o6p_A 83 AKEYWEKAKKELGISTLTMDILSSDADSSKKTVEFVQGSIQDALDGVKVTVSPVPFSVRLDRSNKGDFDAVIGG 156 (229)
T ss_dssp HHHHHHHHHHHHTCSCEEEEEEEECSHHHHHHHHHHHHHHHHHSTTEEEEEEEECHHHHHHHHHHTCCSEEEEE
T ss_pred HHHHHHHcCcccCCCceEEEEEeCCChHHHHHHHHHHHHHHHhCCCcEEEEEecCHHHHHHHhhcCCceEEEec
Confidence 45567666 44453 5666654332222223344667888 8 99988865332 2233456889988875
No 218
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=22.21 E-value=53 Score=30.31 Aligned_cols=103 Identities=9% Similarity=0.020 Sum_probs=60.6
Q ss_pred cEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCCCC
Q 017293 170 FSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVS 249 (374)
Q Consensus 170 ~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~vd 249 (374)
|.++...+. ..+...+..+.+.|.+.-|++++.-|..+-.++ .....+.|+. ++-.+.+|.+- +...
T Consensus 66 D~viI~tP~--------~~~~~~~~ea~~~Gi~~iVi~t~G~~~~~~~~l-~~~A~~~gv~--liGPNc~Gi~~--p~~~ 132 (288)
T 2nu8_A 66 TASVIYVPA--------PFCKDSILEAIDAGIKLIITITEGIPTLDMLTV-KVKLDEAGVR--MIGPNTPGVIT--PGEC 132 (288)
T ss_dssp CEEEECCCG--------GGHHHHHHHHHHTTCSEEEECCCCCCHHHHHHH-HHHHHHHTCE--EECSSCCEEEE--TTTE
T ss_pred CEEEEecCH--------HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH-HHHHHHcCCE--EEecCCcceec--CCcc
Confidence 566655554 467788888888898777777887666554454 3345566663 45445554332 3322
Q ss_pred EEEEcceeeecCCC--eecccccHHHHHH--HHhcCCeEE
Q 017293 250 AVIVGADRVAANGD--TANKIGTYSLALC--AKFHNILFY 285 (374)
Q Consensus 250 ~VlvGAd~i~~nG~--v~nkiGT~~lA~~--Ak~~~vPvy 285 (374)
+.-.-+..+..-|. ++...||...+++ +...++.|-
T Consensus 133 ~~~~~~~~~~~~G~i~~vsqSG~l~~~~~~~~~~~g~G~s 172 (288)
T 2nu8_A 133 KIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQS 172 (288)
T ss_dssp EEESSCTTSCCEEEEEEEESCHHHHHHHHHHHHHTTCCEE
T ss_pred eeEecccCCCCCCCEEEEECcHHHHHHHHHHHHhcCCCEE
Confidence 21111122334454 6788999766654 567777776
No 219
>3jvi_A Protein tyrosine phosphatase; niaid, ssgcid, seattle structural genomics center for infect disease, parasitic protozoan, dysentery; 1.80A {Entamoeba histolytica} PDB: 3js5_A* 3ily_A 3ido_A*
Probab=22.20 E-value=89 Score=26.15 Aligned_cols=79 Identities=9% Similarity=0.048 Sum_probs=46.2
Q ss_pred cEEEEecCCCcccccccccHHHHHHHHH-HCCC--eeEEEEecCCCCCcch---HhHHHHHhhCCCCeEEEcchHHHHHH
Q 017293 170 FSVLTHCNTGSLATAGYGTALGVIRALH-SEGV--LERAYCSETRPFNQGS---RLTAFELVHDRIPATLIADSAAAALM 243 (374)
Q Consensus 170 ~~ILT~~~sg~lat~g~~tv~~~l~~a~-~~g~--~~~V~v~EsrP~~eG~---~l~a~~L~~~GI~vtlI~Dsav~~~m 243 (374)
..||-.|-.- ++.|-.+++++++.. +.|. .+.|.-.-+.|+..|. ..+...|.+.||+....+=.--...+
T Consensus 5 ~~vLFVC~gN---~cRSpmAE~~~~~~~~~~gl~~~~~v~SAGt~~~~~G~~~~~~a~~~l~~~Gid~~~~ar~l~~~~~ 81 (161)
T 3jvi_A 5 MKLLFVCLGN---ICRSPAAEAVMKKVIQNHHLTEKYICDSAGTCSYHEGQQADSRMRKVGKSRGYQVDSISRPVVSSDF 81 (161)
T ss_dssp EEEEEEESSS---SSHHHHHHHHHHHHHHHTTCGGGEEEEEEESCCTTTTCBCCHHHHHHHHHTTCCCCCBCCBCCHHHH
T ss_pred cEEEEECCCc---hhHHHHHHHHHHHHHHHcCCCCcEEEEeeecCCcccCCCCCHHHHHHHHHcCcCCCCeeeECCHHHh
Confidence 4577666321 124556888887754 4453 6888888888865442 23456788999986322211112233
Q ss_pred hcCCCCEEEE
Q 017293 244 KDGRVSAVIV 253 (374)
Q Consensus 244 ~~~~vd~Vlv 253 (374)
...|.||.
T Consensus 82 --~~~DlIl~ 89 (161)
T 3jvi_A 82 --KNFDYIFA 89 (161)
T ss_dssp --HHCSEEEE
T ss_pred --cCCCEEEE
Confidence 45677754
No 220
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=22.10 E-value=2.7e+02 Score=25.86 Aligned_cols=70 Identities=7% Similarity=0.002 Sum_probs=42.7
Q ss_pred ccccHHHHHHHHHHCCC-eeEEE-EecCCCCCcchHhHHHHHhhCCCCeEEEc---------chHHHHHHhcCCCCEEEE
Q 017293 185 GYGTALGVIRALHSEGV-LERAY-CSETRPFNQGSRLTAFELVHDRIPATLIA---------DSAAAALMKDGRVSAVIV 253 (374)
Q Consensus 185 g~~tv~~~l~~a~~~g~-~~~V~-v~EsrP~~eG~~l~a~~L~~~GI~vtlI~---------Dsav~~~m~~~~vd~Vlv 253 (374)
|.|+.+.-|..+++.|. ...|. |.=.+|...+ + -.+.|||+..++ |..+...+++.++|.+++
T Consensus 114 g~g~nl~~ll~~~~~g~l~~~I~~Visn~~~~~~--~----A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~DliVl 187 (302)
T 3o1l_A 114 RESHCLADLLHRWHSDELDCDIACVISNHQDLRS--M----VEWHDIPYYHVPVDPKDKEPAFAEVSRLVGHHQADVVVL 187 (302)
T ss_dssp SCCHHHHHHHHHHHTTCSCSEEEEEEESSSTTHH--H----HHTTTCCEEECCCCSSCCHHHHHHHHHHHHHTTCSEEEE
T ss_pred CCchhHHHHHHHHHCCCCCcEEEEEEECcHHHHH--H----HHHcCCCEEEcCCCcCCHHHHHHHHHHHHHHhCCCEEEH
Confidence 44676766666666664 23333 3333565421 2 247899999884 345667777889999888
Q ss_pred cce-eeec
Q 017293 254 GAD-RVAA 260 (374)
Q Consensus 254 GAd-~i~~ 260 (374)
..= +|++
T Consensus 188 agym~IL~ 195 (302)
T 3o1l_A 188 ARYMQILP 195 (302)
T ss_dssp SSCCSCCC
T ss_pred hHhhhhcC
Confidence 654 4543
No 221
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=22.09 E-value=3.2e+02 Score=24.59 Aligned_cols=77 Identities=13% Similarity=0.006 Sum_probs=40.1
Q ss_pred eEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcc--------hHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHH
Q 017293 203 ERAYCSETRPFNQGSRLTAFELVHDRIPATLIAD--------SAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLA 274 (374)
Q Consensus 203 ~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~D--------sav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA 274 (374)
-+|++. .|.+.+....+..+...|.++..++- ..+-..+ ++++..|++ ..--.+.|.+.. --.++
T Consensus 90 d~vl~~--~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i-~~~~~~v~~-~~~~nptG~~~~---~~~i~ 162 (384)
T 1eg5_A 90 RTIITT--PIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLV-DEDTFLVSI-MAANNEVGTIQP---VEDVT 162 (384)
T ss_dssp CEEEEC--TTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHC-CTTEEEEEE-ESBCTTTCBBCC---HHHHH
T ss_pred CEEEEC--CCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHh-CCCCeEEEE-ECCCCCcccccC---HHHHH
Confidence 355554 45555543333345667888777652 1222233 134444443 222223354444 25677
Q ss_pred HHHHhcC--CeEEE
Q 017293 275 LCAKFHN--ILFYV 286 (374)
Q Consensus 275 ~~Ak~~~--vPvyV 286 (374)
-+|++|+ +++++
T Consensus 163 ~l~~~~~~~~~li~ 176 (384)
T 1eg5_A 163 RIVKKKNKETLVHV 176 (384)
T ss_dssp HHHHHHCTTCEEEE
T ss_pred HHHHhcCCceEEEE
Confidence 7889999 77765
No 222
>2nvv_A Acetyl-COA hydrolase/transferase family protein; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Porphyromonas gingivalis}
Probab=22.04 E-value=5.1e+02 Score=25.83 Aligned_cols=100 Identities=17% Similarity=0.201 Sum_probs=55.3
Q ss_pred HHHHHhHhhhcCCCcEEEEecCCCccccccccc-HHH-HHHHHHH---CC--CeeEEEEe-cCC----------------
Q 017293 156 YGASFLQNQLKNSKFSVLTHCNTGSLATAGYGT-ALG-VIRALHS---EG--VLERAYCS-ETR---------------- 211 (374)
Q Consensus 156 ~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~t-v~~-~l~~a~~---~g--~~~~V~v~-Esr---------------- 211 (374)
.++.+|+ +|++|...++++. |... +.. +.+.+.+ +| .+++++.. -..
T Consensus 10 EAv~~Ik-----dGdtV~~gGf~~~----G~P~~Li~AL~~r~~~~~~~g~~~~Ltl~~~~s~g~~~~~~l~~~g~v~~~ 80 (506)
T 2nvv_A 10 EAAEFVH-----HNDNVGFSGFTPA----GNPKVVPAAIAKRAIAAHEKGNPFKIGMFTGASTGARLDGVLAQADAVKFR 80 (506)
T ss_dssp HHHTTCC-----TTCEEEECCSSST----TCCCSHHHHHHHHHHHHHTTTCCCCEEEECSSCCCTTTHHHHHHTTCEEEE
T ss_pred HHHhhCC-----CCCEEEECCCCCC----CCHHHHHHHHHHhHHhhccccCCceEEEEEecCCCcchhHHhccCCceEEE
Confidence 3456787 8999999876432 2332 333 3344443 33 24555542 111
Q ss_pred -CCCcchHhHHHHHhhCC-CCeEEEcchHHHHHHhcC---CCCEEEEcceeeecCCCeec
Q 017293 212 -PFNQGSRLTAFELVHDR-IPATLIADSAAAALMKDG---RVSAVIVGADRVAANGDTAN 266 (374)
Q Consensus 212 -P~~eG~~l~a~~L~~~G-I~vtlI~Dsav~~~m~~~---~vd~VlvGAd~i~~nG~v~n 266 (374)
|++.|..+ +++.+.| ++.+-+.-+.+..++..+ ++|..++-|...-++|.+.-
T Consensus 81 ~~~~~~~~~--r~~i~~G~i~~~P~~ls~v~~~l~~~~l~~~DVAlI~as~aDe~Gnls~ 138 (506)
T 2nvv_A 81 TPYQSNKDL--RNLINNGSTSYFDLHLSTLAQDLRYGFYGKVDVAIIEVADVTEDGKILP 138 (506)
T ss_dssp ESCCCCHHH--HHHHHTTSSEECCCCGGGHHHHHHTTSSCCCCEEEEEESEECTTSEEEC
T ss_pred eeeCCCHHH--HHHHHcCCCeEeCCCcccHHHHHHcCCcCCCCEEEEEecccCCCceEEE
Confidence 22223322 3445555 333333445566555432 68999999999999997643
No 223
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=21.86 E-value=2.1e+02 Score=20.67 Aligned_cols=78 Identities=14% Similarity=0.084 Sum_probs=45.7
Q ss_pred EEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHH-HHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHH-hcC
Q 017293 204 RAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAK-FHN 281 (374)
Q Consensus 204 ~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~-~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak-~~~ 281 (374)
+|.+.|..|.... .....|.+.|+.+....+..-+ ..+.+.+.|.|++..+- ++. -|.-.+..+-+ ..+
T Consensus 3 ~ilivdd~~~~~~--~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l--~~~-----~g~~~~~~l~~~~~~ 73 (116)
T 3a10_A 3 RILVVDDEPNIRE--LLKEELQEEGYEIDTAENGEEALKKFFSGNYDLVILDIEM--PGI-----SGLEVAGEIRKKKKD 73 (116)
T ss_dssp EEEEECSCHHHHH--HHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSCC--SSS-----CHHHHHHHHHHHCTT
T ss_pred EEEEEeCCHHHHH--HHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEECCC--CCC-----CHHHHHHHHHccCCC
Confidence 5777777665432 2245677788888766654332 23345678999887642 221 23333333333 347
Q ss_pred CeEEEeccC
Q 017293 282 ILFYVAAPL 290 (374)
Q Consensus 282 vPvyV~a~~ 290 (374)
+|+++++..
T Consensus 74 ~~ii~~s~~ 82 (116)
T 3a10_A 74 AKIILLTAY 82 (116)
T ss_dssp CCEEEEESC
T ss_pred CeEEEEECC
Confidence 899988654
No 224
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=21.51 E-value=87 Score=27.91 Aligned_cols=93 Identities=16% Similarity=0.108 Sum_probs=49.3
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCC
Q 017293 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGR 247 (374)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~ 247 (374)
.+..||..+- | .++..-++.+.+.|-.+.|+-.+ +. ..+ .+|.+.| .++++...--...+ ..
T Consensus 30 ~gk~VLVVGg-G-------~va~~ka~~Ll~~GA~VtVvap~--~~---~~l--~~l~~~~-~i~~i~~~~~~~dL--~~ 91 (223)
T 3dfz_A 30 KGRSVLVVGG-G-------TIATRRIKGFLQEGAAITVVAPT--VS---AEI--NEWEAKG-QLRVKRKKVGEEDL--LN 91 (223)
T ss_dssp TTCCEEEECC-S-------HHHHHHHHHHGGGCCCEEEECSS--CC---HHH--HHHHHTT-SCEEECSCCCGGGS--SS
T ss_pred CCCEEEEECC-C-------HHHHHHHHHHHHCCCEEEEECCC--CC---HHH--HHHHHcC-CcEEEECCCCHhHh--CC
Confidence 4566777753 2 24455667777778766666432 21 122 3455544 34455432222234 56
Q ss_pred CCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEec
Q 017293 248 VSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAA 288 (374)
Q Consensus 248 vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a 288 (374)
+|.||...+. .-+| ..++..|+ .|+||-++-
T Consensus 92 adLVIaAT~d-----~~~N----~~I~~~ak-~gi~VNvvD 122 (223)
T 3dfz_A 92 VFFIVVATND-----QAVN----KFVKQHIK-NDQLVNMAS 122 (223)
T ss_dssp CSEEEECCCC-----THHH----HHHHHHSC-TTCEEEC--
T ss_pred CCEEEECCCC-----HHHH----HHHHHHHh-CCCEEEEeC
Confidence 7777643221 1233 45677788 999988763
No 225
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=21.31 E-value=1.1e+02 Score=26.40 Aligned_cols=93 Identities=11% Similarity=-0.001 Sum_probs=45.7
Q ss_pred HHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHH--H--hh----CCCCeEEEcchHHHHHHhc---CCCCEEEEcceee
Q 017293 190 LGVIRALHSEGVLERAYCSETRPFNQGSRLTAFE--L--VH----DRIPATLIADSAAAALMKD---GRVSAVIVGADRV 258 (374)
Q Consensus 190 ~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~--L--~~----~GI~vtlI~Dsav~~~m~~---~~vd~VlvGAd~i 258 (374)
..+++.+.+.|...+|+++++. .++...| + .. .|-+..+-.+..+.++-.. ...|.++|---+.
T Consensus 18 ~~l~~~L~~~g~~V~vv~T~~A-----~~~i~~e~~~~~~~l~~~l~~~~v~~~~~~~~hi~~~s~~~~aD~mvIaPaTa 92 (189)
T 2ejb_A 18 IKLLQVLEELDFSVDLVISRNA-----KVVLKEEHSLTFEEVLKGLKNVRIHEENDFTSPLASGSRLVHYRGVYVVPCST 92 (189)
T ss_dssp HHHHHHHHHTTCEEEEEECHHH-----HHHHHHC-------CCCCCSSEEEEETTCTTSGGGCHHHHTTEEEEEEEEECH
T ss_pred HHHHHHHHHCCCEEEEEEChhH-----HHHhhHHhCCCHHHHHHHhCCCeEecCCCCcCCccccccccccCEEEEecCCH
Confidence 4567777777889999998862 3332221 1 11 1212222222222221111 6788777654222
Q ss_pred ecCCCeecccccHHHHHHHHhc---CCeEEEe
Q 017293 259 AANGDTANKIGTYSLALCAKFH---NILFYVA 287 (374)
Q Consensus 259 ~~nG~v~nkiGT~~lA~~Ak~~---~vPvyV~ 287 (374)
--=+.++|-+.--.+..+|... ++|++++
T Consensus 93 nTlAkiA~GiaDnLlt~~a~~~lk~~~plvl~ 124 (189)
T 2ejb_A 93 NTLSCIANGINKNLIHRVGEVALKERVPLVLL 124 (189)
T ss_dssp HHHHHHHHTCCSSHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHcCcCCcHHHHHHHHHccCCCcEEEE
Confidence 1112233444444555555555 8999876
No 226
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=21.11 E-value=78 Score=25.49 Aligned_cols=82 Identities=13% Similarity=0.062 Sum_probs=50.1
Q ss_pred CCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEE-EcchHHH-HHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHH
Q 017293 200 GVLERAYCSETRPFNQGSRLTAFELVHDRIPATL-IADSAAA-ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCA 277 (374)
Q Consensus 200 g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtl-I~Dsav~-~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~A 277 (374)
+++.+|.|+|-.|... ++....|.+.|..++. ..|..-+ ..+++..+|.|++ |--+++. -|--.+..+=
T Consensus 10 ~k~~rILiVDD~~~~r--~~l~~~L~~~G~~~v~~a~~g~~al~~~~~~~~Dlill--D~~MP~m-----dG~el~~~ir 80 (134)
T 3to5_A 10 NKNMKILIVDDFSTMR--RIVKNLLRDLGFNNTQEADDGLTALPMLKKGDFDFVVT--DWNMPGM-----QGIDLLKNIR 80 (134)
T ss_dssp CTTCCEEEECSCHHHH--HHHHHHHHHTTCCCEEEESSHHHHHHHHHHHCCSEEEE--ESCCSSS-----CHHHHHHHHH
T ss_pred CCCCEEEEEeCCHHHH--HHHHHHHHHcCCcEEEEECCHHHHHHHHHhCCCCEEEE--cCCCCCC-----CHHHHHHHHH
Confidence 4678899999877653 3446678899997554 4454433 2356678998887 4445532 2333333221
Q ss_pred H---hcCCeEEEeccC
Q 017293 278 K---FHNILFYVAAPL 290 (374)
Q Consensus 278 k---~~~vPvyV~a~~ 290 (374)
+ ..++||++++..
T Consensus 81 ~~~~~~~ipvI~lTa~ 96 (134)
T 3to5_A 81 ADEELKHLPVLMITAE 96 (134)
T ss_dssp HSTTTTTCCEEEEESS
T ss_pred hCCCCCCCeEEEEECC
Confidence 1 246999988653
No 227
>2ahu_A Putative enzyme YDIF; COA transferase, glutamyl thioester, structural genomi montreal-kingston bacterial structural genomics initiative; 1.90A {Escherichia coli} SCOP: c.124.1.3 c.124.1.2 PDB: 2ahv_A* 2ahw_A*
Probab=20.95 E-value=6.1e+02 Score=25.37 Aligned_cols=43 Identities=7% Similarity=0.057 Sum_probs=33.1
Q ss_pred CCCEEEEcceeeecCCCeecc--cccH---HHHHHHHhcCCeEEEecc
Q 017293 247 RVSAVIVGADRVAANGDTANK--IGTY---SLALCAKFHNILFYVAAP 289 (374)
Q Consensus 247 ~vd~VlvGAd~i~~nG~v~nk--iGT~---~lA~~Ak~~~vPvyV~a~ 289 (374)
++|..|+-|...-++|.+.-. .+.+ .+|.+||..+--|+|-++
T Consensus 180 ~~DVAlI~a~~aD~~Gn~~~~~~~~~~~~~~~a~aAk~~gg~VIveVn 227 (531)
T 2ahu_A 180 APDIAFIRATTCDSEGYATFEDEVMYLDALVIAQAVHNNGGIVMMQVQ 227 (531)
T ss_dssp CCSEEEEECSEEETTCCEECTTSSCCTTHHHHHHHHHTTTCEEEEEES
T ss_pred CCeEEEEEcccCCCCceEEEcCcccccCHHHHHHhHhhcCCEEEEEEc
Confidence 799999999999999986533 2233 678999988777777554
No 228
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=20.89 E-value=2e+02 Score=22.28 Aligned_cols=81 Identities=10% Similarity=0.020 Sum_probs=46.8
Q ss_pred eeEEEEecCCCCCcchHhHHHHHhh-CCCCeE-EEcchH-HHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHH
Q 017293 202 LERAYCSETRPFNQGSRLTAFELVH-DRIPAT-LIADSA-AAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAK 278 (374)
Q Consensus 202 ~~~V~v~EsrP~~eG~~l~a~~L~~-~GI~vt-lI~Dsa-v~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak 278 (374)
..+|.++|..|.... .....|.+ .|+.+. ...+.. +-..+.+...|.||+..+- .++ -|--.+..+.+
T Consensus 5 ~~~ILivdd~~~~~~--~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~~~~dlii~D~~l--~~~-----~g~~~~~~l~~ 75 (153)
T 3cz5_A 5 TARIMLVDDHPIVRE--GYRRLIERRPGYAVVAEAADAGEAYRLYRETTPDIVVMDLTL--PGP-----GGIEATRHIRQ 75 (153)
T ss_dssp CEEEEEECSCHHHHH--HHHHHHTTSTTEEEEEEESSHHHHHHHHHTTCCSEEEECSCC--SSS-----CHHHHHHHHHH
T ss_pred ccEEEEECCcHHHHH--HHHHHHhhCCCcEEEEEeCCHHHHHHHHhcCCCCEEEEecCC--CCC-----CHHHHHHHHHH
Confidence 467888887765422 22445666 688876 444432 2334556779999887653 221 23333333433
Q ss_pred h-cCCeEEEeccCc
Q 017293 279 F-HNILFYVAAPLT 291 (374)
Q Consensus 279 ~-~~vPvyV~a~~~ 291 (374)
. .++|+++++...
T Consensus 76 ~~~~~~ii~ls~~~ 89 (153)
T 3cz5_A 76 WDGAARILIFTMHQ 89 (153)
T ss_dssp HCTTCCEEEEESCC
T ss_pred hCCCCeEEEEECCC
Confidence 3 479999887543
No 229
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=20.78 E-value=2.7e+02 Score=20.90 Aligned_cols=83 Identities=7% Similarity=0.012 Sum_probs=51.4
Q ss_pred CCeeEEEEecCCCCCcchHhHHHHHhhCCC--CeEEEcchHHH-HHHhc-----CCCCEEEEcceeeecCCCeecccccH
Q 017293 200 GVLERAYCSETRPFNQGSRLTAFELVHDRI--PATLIADSAAA-ALMKD-----GRVSAVIVGADRVAANGDTANKIGTY 271 (374)
Q Consensus 200 g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI--~vtlI~Dsav~-~~m~~-----~~vd~VlvGAd~i~~nG~v~nkiGT~ 271 (374)
++..+|.++|..|.... .....|...|. .|....+..-+ ..+.+ ..+|.||+..+ ++++ -|--
T Consensus 7 ~~~~~iLivdd~~~~~~--~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~--l~~~-----~g~~ 77 (146)
T 3ilh_A 7 RKIDSVLLIDDDDIVNF--LNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDIN--MPGI-----NGWE 77 (146)
T ss_dssp CCEEEEEEECSCHHHHH--HHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESS--CSSS-----CHHH
T ss_pred CccceEEEEeCCHHHHH--HHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCC--CCCC-----CHHH
Confidence 56788999998876522 23556888888 77776665433 23444 67999998654 3332 2333
Q ss_pred HHHHHHH-----hcCCeEEEeccCc
Q 017293 272 SLALCAK-----FHNILFYVAAPLT 291 (374)
Q Consensus 272 ~lA~~Ak-----~~~vPvyV~a~~~ 291 (374)
.+..+-+ ...+|+++++...
T Consensus 78 ~~~~l~~~~~~~~~~~~ii~~t~~~ 102 (146)
T 3ilh_A 78 LIDLFKQHFQPMKNKSIVCLLSSSL 102 (146)
T ss_dssp HHHHHHHHCGGGTTTCEEEEECSSC
T ss_pred HHHHHHHhhhhccCCCeEEEEeCCC
Confidence 3333433 3579999887644
No 230
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*
Probab=20.71 E-value=1.4e+02 Score=27.08 Aligned_cols=100 Identities=22% Similarity=0.205 Sum_probs=53.1
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEE--Ecc-hHHHHHHh
Q 017293 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATL--IAD-SAAAALMK 244 (374)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtl--I~D-sav~~~m~ 244 (374)
.+.+||..+-+|-+ | ..+.+.+.++| .+|+++..+|.. .++.+.. +.| ..+..++
T Consensus 18 ~~~~vlVtGatG~i-----G--~~l~~~L~~~G--~~V~~~~r~~~~------------~~~~~~~~Dl~d~~~~~~~~- 75 (347)
T 4id9_A 18 GSHMILVTGSAGRV-----G--RAVVAALRTQG--RTVRGFDLRPSG------------TGGEEVVGSLEDGQALSDAI- 75 (347)
T ss_dssp ---CEEEETTTSHH-----H--HHHHHHHHHTT--CCEEEEESSCCS------------SCCSEEESCTTCHHHHHHHH-
T ss_pred CCCEEEEECCCChH-----H--HHHHHHHHhCC--CEEEEEeCCCCC------------CCccEEecCcCCHHHHHHHH-
Confidence 34567766655432 2 23445556666 456666544432 1222211 112 3345666
Q ss_pred cCCCCEEEEcceeeecCCC------eecccccHHHHHHHHhcCCeEEEeccC
Q 017293 245 DGRVSAVIVGADRVAANGD------TANKIGTYSLALCAKFHNILFYVAAPL 290 (374)
Q Consensus 245 ~~~vd~VlvGAd~i~~nG~------v~nkiGT~~lA~~Ak~~~vPvyV~a~~ 290 (374)
.++|.|+--|-....+.. -.|-.||..+.-+|+.++++-+|...+
T Consensus 76 -~~~d~vih~A~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~V~~SS 126 (347)
T 4id9_A 76 -MGVSAVLHLGAFMSWAPADRDRMFAVNVEGTRRLLDAASAAGVRRFVFASS 126 (347)
T ss_dssp -TTCSEEEECCCCCCSSGGGHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred -hCCCEEEECCcccCcchhhHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECC
Confidence 688888765532221111 146789999999999999865554444
No 231
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Probab=20.68 E-value=4.3e+02 Score=24.46 Aligned_cols=71 Identities=18% Similarity=0.181 Sum_probs=37.5
Q ss_pred HHHHHHHHHHCCCeeEEEEec-CCCCCcchHh----HHHHHhhCCCCeEEE---cchHHHHHHhcCCCCEEEEcce-eee
Q 017293 189 ALGVIRALHSEGVLERAYCSE-TRPFNQGSRL----TAFELVHDRIPATLI---ADSAAAALMKDGRVSAVIVGAD-RVA 259 (374)
Q Consensus 189 v~~~l~~a~~~g~~~~V~v~E-srP~~eG~~l----~a~~L~~~GI~vtlI---~Dsav~~~m~~~~vd~VlvGAd-~i~ 259 (374)
+...|+...+.|..+..+++. .+|..-|.++ ......+.|||+..- .|...-..++..++|.+++-+= .|+
T Consensus 15 a~~~L~~L~~~~~~i~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~l~~~~~Dliv~~~y~~il 94 (314)
T 1fmt_A 15 AARHLDALLSSGHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVFQPVSLRPQENQQLVAELQADVMVVVAYGLIL 94 (314)
T ss_dssp HHHHHHHHHHTTCEEEEEECCCCBC------CBCCHHHHHHHHTTCCEECCSCSCSHHHHHHHHHTTCSEEEEESCCSCC
T ss_pred HHHHHHHHHHCCCcEEEEEeCCCCccccccccCcCHHHHHHHHcCCcEEecCCCCCHHHHHHHHhcCCCEEEEeeccccC
Confidence 344566666666544444443 2444334322 122345789998432 1455666677789999888664 443
No 232
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=20.68 E-value=1.1e+02 Score=25.38 Aligned_cols=59 Identities=17% Similarity=0.133 Sum_probs=36.0
Q ss_pred HHHhhCCCCeEEEcchHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccC
Q 017293 222 FELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPL 290 (374)
Q Consensus 222 ~~L~~~GI~vtlI~Dsav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~ 290 (374)
..|...|+++..+.|... ..+ .+=|.||+ |...|.. .-+..++-.||..|.|+++++..
T Consensus 57 ~~l~~~g~~~~~~~~~~~-~~~--~~~d~vI~----iS~sG~t---~~~~~~~~~ak~~g~~vi~IT~~ 115 (186)
T 1m3s_A 57 MRLMHMGFNAHIVGEILT-PPL--AEGDLVII----GSGSGET---KSLIHTAAKAKSLHGIVAALTIN 115 (186)
T ss_dssp HHHHHTTCCEEETTSTTC-CCC--CTTCEEEE----ECSSSCC---HHHHHHHHHHHHTTCEEEEEESC
T ss_pred HHHHhcCCeEEEeCcccc-cCC--CCCCEEEE----EcCCCCc---HHHHHHHHHHHHCCCEEEEEECC
Confidence 345556777777766531 122 34455543 3344533 34667788999999999998764
No 233
>4eu9_A Succinyl-COA:acetate coenzyme A transferase; HET: COA; 1.48A {Acetobacter aceti} PDB: 4eua_A* 4eu3_A* 4eu4_A* 4eu5_A* 4eu6_A* 4eu7_A* 4eu8_A* 4eub_A* 4euc_A* 4eud_A*
Probab=20.65 E-value=2.2e+02 Score=28.49 Aligned_cols=111 Identities=14% Similarity=0.109 Sum_probs=61.1
Q ss_pred HHHHHHhHhhhcCCCcEEEEecCCCccccccccc-HHHHH-HHH---HHCCC--eeEEEEecC-CCCCc-----------
Q 017293 155 SYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGT-ALGVI-RAL---HSEGV--LERAYCSET-RPFNQ----------- 215 (374)
Q Consensus 155 ~~~~~~i~~~~~~~~~~ILT~~~sg~lat~g~~t-v~~~l-~~a---~~~g~--~~~V~v~Es-rP~~e----------- 215 (374)
+.++.+|+ +|++|...+..|. |+.. +...| +.+ +..|. .+.++...+ .|..+
T Consensus 18 eEAv~~Ik-----dGd~V~~~Gf~~~----G~P~~L~~ALa~R~~~~~~~g~~~~i~l~~~~~~~~~~~~~l~~~g~i~~ 88 (514)
T 4eu9_A 18 ETASELIK-----HGDVVGTSGFTGA----GYPKEVPKALAQRMEAAHDRGEKYQISLITGASTGPQLDGELAKANGVYF 88 (514)
T ss_dssp HHHHTTCC-----TTCEEEECCBTTB----SCCCHHHHHHHHHHHHHHHTTCCCCEEEECSSCCCTTTHHHHHHTTCEEE
T ss_pred HHHHHhCC-----CCCEEEECCCCCC----cCHHHHHHHHHHHHHHhhcCCcceeEEEEEecCcCcccccccccCCCEEE
Confidence 34566788 9999999865432 3333 23333 222 22343 455554432 23322
Q ss_pred ------chHhHHHHHhhCC-CCeEEEcchHHHHHHhc---CCCCEEEEcceeeecCCCee-cccccHHHHHH
Q 017293 216 ------GSRLTAFELVHDR-IPATLIADSAAAALMKD---GRVSAVIVGADRVAANGDTA-NKIGTYSLALC 276 (374)
Q Consensus 216 ------G~~l~a~~L~~~G-I~vtlI~Dsav~~~m~~---~~vd~VlvGAd~i~~nG~v~-nkiGT~~lA~~ 276 (374)
|.. .+++.+.| ++..-+.-+.++..+.. .++|..++-+-..-++|.+. .....+..+.+
T Consensus 89 ~~~~~~~~~--~R~~i~~G~~~y~p~~ls~~~~~~~~~~~~~iDVAlI~as~~De~Gnis~g~sv~~~~~~~ 158 (514)
T 4eu9_A 89 RSPFNTDAT--MRNRINAGETEYFDNHLGQVAGRAVQGNYGKFNIALVEATAITEDGGIVPTSSVGNSQTFL 158 (514)
T ss_dssp EESCCCCHH--HHHHHHTTSSEECCCCGGGHHHHHHHTTTCCCCEEEEEEEEECTTCCEEECSBCBTHHHHH
T ss_pred EEecCCCHH--HHHHHHcCCeeEECccccchHHHHHhccCCCceEEEEEEEcCCCCceEEecCCcchHHHHH
Confidence 211 23455566 34444455666654433 47999999999999999874 33333444443
No 234
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=20.39 E-value=4e+02 Score=24.30 Aligned_cols=76 Identities=8% Similarity=-0.072 Sum_probs=38.7
Q ss_pred EEEEecCCCCCcchHhHHHHHhhCCCCeEEEcc--------------hHHHHHHhcCCCCEEEEcceeeecCCCeecccc
Q 017293 204 RAYCSETRPFNQGSRLTAFELVHDRIPATLIAD--------------SAAAALMKDGRVSAVIVGADRVAANGDTANKIG 269 (374)
Q Consensus 204 ~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~D--------------sav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiG 269 (374)
+|++.+ |.+.+.. .-+...|.++..++- ..+-..++ .+...|++- .--.+.|.+...--
T Consensus 128 ~vl~~~--~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~-~~~~~v~~~-~p~nptG~~~~~~~ 200 (407)
T 3nra_A 128 KVAIVQ--PDYFANR---KLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFK-AGARVFLFS-NPNNPAGVVYSAEE 200 (407)
T ss_dssp EEEEEE--SCCTHHH---HHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHH-TTCCEEEEE-SSCTTTCCCCCHHH
T ss_pred EEEEcC--CcccchH---HHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHh-hCCcEEEEc-CCCCCCCcccCHHH
Confidence 455533 5565543 234556777666652 22333343 355655442 11122343333222
Q ss_pred cHHHHHHHHhcCCeEEE
Q 017293 270 TYSLALCAKFHNILFYV 286 (374)
Q Consensus 270 T~~lA~~Ak~~~vPvyV 286 (374)
--.++-+|+.|++++++
T Consensus 201 l~~i~~~~~~~~~~li~ 217 (407)
T 3nra_A 201 IGQIAALAARYGATVIA 217 (407)
T ss_dssp HHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHcCCEEEE
Confidence 34566788999998887
No 235
>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0
Probab=20.27 E-value=1.2e+02 Score=27.25 Aligned_cols=53 Identities=13% Similarity=0.018 Sum_probs=33.8
Q ss_pred chHHHHHHhcCCCCEEEEcceeeecCCC--------eecccccHHHHHHHHhcCCeEEEeccC
Q 017293 236 DSAAAALMKDGRVSAVIVGADRVAANGD--------TANKIGTYSLALCAKFHNILFYVAAPL 290 (374)
Q Consensus 236 Dsav~~~m~~~~vd~VlvGAd~i~~nG~--------v~nkiGT~~lA~~Ak~~~vPvyV~a~~ 290 (374)
|..+..++ .++|.|+--|-....+.+ -+|-.||..+.-+|+..+++-+|...+
T Consensus 54 ~~~~~~~~--~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS 114 (313)
T 3ehe_A 54 ADDIKDYL--KGAEEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTST 114 (313)
T ss_dssp TSCCHHHH--TTCSEEEECCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred hHHHHHHh--cCCCEEEECCCCCChhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCc
Confidence 44566677 788988865532211111 137789999999999988865554444
No 236
>1xr4_A Putative citrate lyase alpha chain/citrate-ACP TR; the midwest center for structural genomics, MCSG, structural genomics; 2.37A {Salmonella typhimurium} SCOP: c.124.1.2 c.124.1.2
Probab=20.14 E-value=5.4e+02 Score=25.66 Aligned_cols=120 Identities=13% Similarity=0.076 Sum_probs=70.4
Q ss_pred HHHHHH--hHhhhcCCCcEEEEecCCCccccccccc-HHH-HHHHHHHCC-CeeEEEEecCCCC----------------
Q 017293 155 SYGASF--LQNQLKNSKFSVLTHCNTGSLATAGYGT-ALG-VIRALHSEG-VLERAYCSETRPF---------------- 213 (374)
Q Consensus 155 ~~~~~~--i~~~~~~~~~~ILT~~~sg~lat~g~~t-v~~-~l~~a~~~g-~~~~V~v~EsrP~---------------- 213 (374)
+.++++ |+ +|++|..++.+ |... +.. +.+.+.+++ ++++++-.-..+.
T Consensus 50 eEAv~~~~Ik-----dG~tV~~gg~~------G~P~~Li~AL~~r~~~~g~kdLtli~~s~g~~~~~l~~~i~~g~v~r~ 118 (509)
T 1xr4_A 50 EEAIRRSGLK-----NGMTISFHHAF------RGGDKVVNMVMAKLAEMGFRDLTLASSSLIDAHWPLIEHIKNGVVRQI 118 (509)
T ss_dssp HHHHHHTTCC-----TTCEEEECCTT------GGGCCHHHHHHHHHHHTTCCSEEEEESCCCGGGTTHHHHHHTTSEEEE
T ss_pred HHHhcCCCCC-----CcCEEEECCcc------CCHHHHHHHHHHHHHhcCCcceEEEecCCcCcchhHHHHhhcCceEEE
Confidence 345666 77 89999987533 3332 333 344454444 4678775422221
Q ss_pred ---CcchHhHHHHHhh---CCCCeEEEcchHHHHHHhc--CCCCEEEEcceeeecCCCeeccc-----ccHHHHHHHHhc
Q 017293 214 ---NQGSRLTAFELVH---DRIPATLIADSAAAALMKD--GRVSAVIVGADRVAANGDTANKI-----GTYSLALCAKFH 280 (374)
Q Consensus 214 ---~eG~~l~a~~L~~---~GI~vtlI~Dsav~~~m~~--~~vd~VlvGAd~i~~nG~v~nki-----GT~~lA~~Ak~~ 280 (374)
+-|..+ +++.+ ..+|..+.+-....+++.. -++|..++.|...-++|.+.-.- ++...+.++...
T Consensus 119 ~~~~~g~~~--r~~i~~G~~~~P~~~s~~~g~p~ll~~~~l~iDVAlI~as~aD~~Gnls~~~g~~~~~s~~~~~a~a~~ 196 (509)
T 1xr4_A 119 YTSGLRGKL--GEEISAGLMENPVQIHSHGGRVKLIQSGELNIDVAFLGVPCCDEFGNANGFSGKSRCGSLGYAQVDAQY 196 (509)
T ss_dssp EESBCCHHH--HHHHHHTCCSSCEEECCHHHHHHHHHTTSSCCSEEEEEESEEETTCCEESSSSSSCCCCCTTHHHHHHH
T ss_pred EEccCCHHH--HHHHHcCCCcCCeeEeccCCHHHHHhcCCCCceEEEEEeccCCCCceEEEeCCCCcccchHHHHHHHhh
Confidence 112111 22322 3368888753346777742 37999999999999999876422 366666666777
Q ss_pred CCeEEEe
Q 017293 281 NILFYVA 287 (374)
Q Consensus 281 ~vPvyV~ 287 (374)
..-|++-
T Consensus 197 A~~VIaE 203 (509)
T 1xr4_A 197 AKCVVLL 203 (509)
T ss_dssp CSEEEEE
T ss_pred CCEEEEE
Confidence 7666654
No 237
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=20.12 E-value=4.6e+02 Score=24.19 Aligned_cols=95 Identities=14% Similarity=0.117 Sum_probs=52.6
Q ss_pred CCcEEEEecCCCcccccccccHHHHHHHHHH---CCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEc--chHHHHH
Q 017293 168 SKFSVLTHCNTGSLATAGYGTALGVIRALHS---EGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIA--DSAAAAL 242 (374)
Q Consensus 168 ~~~~ILT~~~sg~lat~g~~tv~~~l~~a~~---~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~--Dsav~~~ 242 (374)
+..+||..+ ||+ |.......+..+.. ...++.|+..-.+...+ .+ ...+.+.++++.+.+ |. +..+
T Consensus 179 ~~~~ilv~g--Gs~---g~~~~~~~~~~al~~l~~~~~~~vi~~~G~~~~~--~~-~~~~~~~~~~~~v~~f~~d-m~~~ 249 (365)
T 3s2u_A 179 RRVNLLVLG--GSL---GAEPLNKLLPEALAQVPLEIRPAIRHQAGRQHAE--IT-AERYRTVAVEADVAPFISD-MAAA 249 (365)
T ss_dssp SCCEEEECC--TTT---TCSHHHHHHHHHHHTSCTTTCCEEEEECCTTTHH--HH-HHHHHHTTCCCEEESCCSC-HHHH
T ss_pred CCcEEEEEC--CcC---CccccchhhHHHHHhcccccceEEEEecCccccc--cc-cceecccccccccccchhh-hhhh
Confidence 346777765 443 33444445544433 23345665544433222 22 345677888877654 33 5566
Q ss_pred HhcCCCCEEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEe
Q 017293 243 MKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVA 287 (374)
Q Consensus 243 m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~ 287 (374)
| ..+|.||. +.|...++- +-..|+|++++
T Consensus 250 l--~~aDlvI~-------------raG~~Tv~E-~~a~G~P~Ili 278 (365)
T 3s2u_A 250 Y--AWADLVIC-------------RAGALTVSE-LTAAGLPAFLV 278 (365)
T ss_dssp H--HHCSEEEE-------------CCCHHHHHH-HHHHTCCEEEC
T ss_pred h--ccceEEEe-------------cCCcchHHH-HHHhCCCeEEe
Confidence 7 68888752 345444443 44579998875
No 238
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=20.04 E-value=2.9e+02 Score=25.43 Aligned_cols=78 Identities=9% Similarity=-0.014 Sum_probs=39.2
Q ss_pred EEEEecCCCCCcchHhHHHHHhhCCCCeEEEcc-------hHHHHHHhcCCCCEEEEcceeeecCCCeecccccHHHHHH
Q 017293 204 RAYCSETRPFNQGSRLTAFELVHDRIPATLIAD-------SAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALC 276 (374)
Q Consensus 204 ~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~D-------sav~~~m~~~~vd~VlvGAd~i~~nG~v~nkiGT~~lA~~ 276 (374)
+|++. .|.+.|... .+...|.++..++- ..+-..+...++..|++=..--.+.|.+...-==..++-+
T Consensus 117 ~Vl~~--~p~y~~~~~---~~~~~g~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~ 191 (397)
T 2zyj_A 117 PVLLE--APSYMGAIQ---AFRLQGPRFLTVPAGEEGPDLDALEEVLKRERPRFLYLIPSFQNPTGGLTPLPARKRLLQM 191 (397)
T ss_dssp EEEEE--ESCCHHHHH---HHHTTCCEEEEEEEETTEECHHHHHHHHHHCCCSCEEECCBSCTTTCCBCCHHHHHHHHHH
T ss_pred EEEEe--CCCcHHHHH---HHHHcCCEEEecCcCCCCCCHHHHHHHHhhcCCeEEEECCCCcCCCCCcCCHHHHHHHHHH
Confidence 55553 366666432 24457877766642 1233344333555553322211223433221111257778
Q ss_pred HHhcCCeEEE
Q 017293 277 AKFHNILFYV 286 (374)
Q Consensus 277 Ak~~~vPvyV 286 (374)
|++|++++++
T Consensus 192 ~~~~~~~li~ 201 (397)
T 2zyj_A 192 VMERGLVVVE 201 (397)
T ss_dssp HHHHTCCEEE
T ss_pred HHHcCCEEEE
Confidence 8999998886
No 239
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=20.04 E-value=1.7e+02 Score=22.99 Aligned_cols=82 Identities=13% Similarity=0.096 Sum_probs=49.2
Q ss_pred CCeeEEEEecCCCCCcchHhHHHHHhhCCCCeE-EEcchHHH-HHHhcC--CCCEEEEcceeeecCCCeecccccHHHHH
Q 017293 200 GVLERAYCSETRPFNQGSRLTAFELVHDRIPAT-LIADSAAA-ALMKDG--RVSAVIVGADRVAANGDTANKIGTYSLAL 275 (374)
Q Consensus 200 g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vt-lI~Dsav~-~~m~~~--~vd~VlvGAd~i~~nG~v~nkiGT~~lA~ 275 (374)
+...+|.++|..|... +.....|.+.|+.+. ...+..-+ ..+.+. ++|.||+..+- .+ .-|--.+..
T Consensus 34 ~~~~~Ilivdd~~~~~--~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l--~~-----~~g~~~~~~ 104 (157)
T 3hzh_A 34 GIPFNVLIVDDSVFTV--KQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITM--PK-----MDGITCLSN 104 (157)
T ss_dssp TEECEEEEECSCHHHH--HHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSC--SS-----SCHHHHHHH
T ss_pred CCceEEEEEeCCHHHH--HHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccC--CC-----ccHHHHHHH
Confidence 4578999999887652 223556888999887 45443322 233334 78999887642 22 123333333
Q ss_pred HHH-hcCCeEEEeccC
Q 017293 276 CAK-FHNILFYVAAPL 290 (374)
Q Consensus 276 ~Ak-~~~vPvyV~a~~ 290 (374)
+-+ ..++|+++++..
T Consensus 105 lr~~~~~~~ii~ls~~ 120 (157)
T 3hzh_A 105 IMEFDKNARVIMISAL 120 (157)
T ss_dssp HHHHCTTCCEEEEESC
T ss_pred HHhhCCCCcEEEEecc
Confidence 333 357999988754
Done!