RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 017293
(374 letters)
>d2a0ua1 c.124.1.5 (A:10-383) Initiation factor 2b {Leishmania major
[TaxId: 5664]}
Length = 374
Score = 297 bits (760), Expect = 4e-99
Identities = 178/372 (47%), Positives = 242/372 (65%), Gaps = 9/372 (2%)
Query: 9 DNNSLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGAPAIAMAAALS 68
+ +L+SI Y GSL+LLDQRKLPLET++ ++ D WSAI+EM VRGAPAIA++AAL
Sbjct: 5 HHATLESIKYTPGSLRLLDQRKLPLETVFDDVLTVEDIWSAIKEMRVRGAPAIAVSAALG 64
Query: 69 LAVEV--FNLNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATAS 126
+AV N + + +FL +++++SRPTAVNL + LK + K T +
Sbjct: 65 IAVATQRKAANGELKSGREVQTFLLTSCDFVMTSRPTAVNLFNCLRDLKAQVDKLDPTKA 124
Query: 127 EANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLK---NSKFSVLTHCNTGSLAT 183
A V QA++E AE + +DVA N+ I +GA+ + K K S+LT CNTG+LAT
Sbjct: 125 AAE-VAQAFVELAEAVYTNDVAFNEGIMRHGAAHILAAAKAEGRDKVSILTICNTGALAT 183
Query: 184 AGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALM 243
+ YGTALGV+R L +G LER Y ETRP+NQG+RLT +E V + IP TLI D AA++LM
Sbjct: 184 SRYGTALGVVRQLFYDGKLERVYACETRPWNQGARLTVYECVQEDIPCTLICDGAASSLM 243
Query: 244 KDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEI 303
+ ++ AV+VGADR+ NGDTANKIGTY+LA+ AKFH + YVAAP T++D+ +SG +
Sbjct: 244 LNRKIDAVVVGADRICQNGDTANKIGTYNLAVSAKFHGVKLYVAAPTTTLDVKTASGNHV 303
Query: 304 VIEERSAKELLCSRGGLGEQVAA-SGISVWNPAFDVTPANLIT-GIITEKQGVVTKAGAD 361
IEER E+ + VA +S+WNP FD+TP+ LIT GIITEK GV A +
Sbjct: 304 EIEEREPTEITTNLVTKQRVVADGPHLSIWNPVFDITPSELITGGIITEK-GVQAPAASA 362
Query: 362 DAFDIKDFIQKT 373
+DI I +
Sbjct: 363 PYYDIASIIAQA 374
>g1w2w.1 c.124.1.5 (A:,B:) Putative methylthioribose-1-phosphate
isomerase Ypr118W {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 402
Score = 282 bits (722), Expect = 4e-93
Identities = 156/404 (38%), Positives = 225/404 (55%), Gaps = 54/404 (13%)
Query: 12 SLQSICYRRG-----SLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGAPAIAMAAA 66
SL++I + R S+++LDQ LP T Y+ I DG+S I+ M VRGAPAIA+ +
Sbjct: 2 SLEAIVFDRSEPENVSVKVLDQLLLPYTTKYVPIHTIDDGYSVIKSMQVRGAPAIAIVGS 61
Query: 67 LSLAVEVFNLNAFSGTAADAA----------SFLGNKLEYLVSSRPTAVNLSDAAAKLKE 116
LS+ EV + + + L +L++L+SSRPTAVNLS++ ++K
Sbjct: 62 LSVLTEVQLIKHNPTSDVATLYSLVNWESTKTVLNKRLDFLLSSRPTAVNLSNSLVEIK- 120
Query: 117 IISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKF----SV 172
++S+ + + ++ +D+A N +G GA +L + L+ F +V
Sbjct: 121 ---NILKSSSDLKAFDGSLYNYVCELIDEDLANNMKMGDNGAKYLIDVLQKDGFKDEFAV 177
Query: 173 LTHCNTGSLATAGYGTALGVIRALHSE--------GVLERAYCSETRPFNQGSRLTAFEL 224
LT CNTGSLAT+GYGTALGVIR+L + + + ETRP+NQGSRLTA+EL
Sbjct: 178 LTICNTGSLATSGYGTALGVIRSLWKDSLAKTDKCPRMGHVFPLETRPYNQGSRLTAYEL 237
Query: 225 VHDRIPATLIADSAAAALMKDGRV--SAVIVGADRVAANGDTANKIGTYSLALCAKFHNI 282
V+D+IP+TLI DS+ A ++ + A VGADR+ NGDTANKIGT LA+ K I
Sbjct: 238 VYDKIPSTLITDSSIAYRIRTSPIPIKAAFVGADRIVRNGDTANKIGTLQLAVICKQFGI 297
Query: 283 LFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGL-------------------GEQ 323
F+V AP T+ID +G +I++EER+ +E G +
Sbjct: 298 KFFVVAPKTTIDNVTETGDDIIVEERNPEEFKVVTGTVINPENGSLILNESGEPITGKVG 357
Query: 324 VAASGISVWNPAFDVTPANLITGIITEKQGVVTKAGADDAFDIK 367
+A I+VWNPAFD+TP LI GIITE+ GV T + F ++
Sbjct: 358 IAPLEINVWNPAFDITPHELIDGIITEE-GVFT-KNSSGEFQLE 399
>d1t9ka_ c.124.1.5 (A:) Probable methylthioribose-1-phosphate
isomerase TM0911 {Thermotoga maritima [TaxId: 2336]}
Length = 340
Score = 269 bits (689), Expect = 6e-89
Identities = 154/345 (44%), Positives = 213/345 (61%), Gaps = 18/345 (5%)
Query: 12 SLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGAPAIAMAAALSLAV 71
+++ + SL+LLDQRKLP Y+E + + AI+EM+VRGAPAI +AAA +
Sbjct: 2 KTKTMEWSGNSLKLLDQRKLPFIEEYVECKTHEEVAHAIKEMIVRGAPAIGVAAAFGYVL 61
Query: 72 EVFNLNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSV 131
+ + ++ E L +RPTAVNL A +++++ + ++ ++
Sbjct: 62 GLRDYKT-----GSLTDWMKQVKETLARTRPTAVNLFWALNRMEKVFFEN----ADRENL 112
Query: 132 FQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALG 191
F+ A M +D+ NKAIG GA +++ ++LTHCN G+LAT YGTALG
Sbjct: 113 FEILENEALKMAYEDIEVNKAIGKNGAQLIKD-----GSTILTHCNAGALATVDYGTALG 167
Query: 192 VIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAV 251
VIRA G R + ETRP+ QG+RLTA+EL+ D I +I D+ A LMK G + AV
Sbjct: 168 VIRAAVESGKRIRVFADETRPYLQGARLTAWELMKDGIEVYVITDNMAGWLMKRGLIDAV 227
Query: 252 IVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAK 311
+VGADR+A NGDTANKIGTYSLA+ AK +NI FYVAAP+++ID T+ SG+EI IEER +
Sbjct: 228 VVGADRIALNGDTANKIGTYSLAVLAKRNNIPFYVAAPVSTIDPTIRSGEEIPIEERRPE 287
Query: 312 ELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKQGVVT 356
E+ G ++A G+ V NPAFDVT LIT IITEK GV+
Sbjct: 288 EVTHCG---GNRIAPEGVKVLNPAFDVTENTLITAIITEK-GVIR 328
>d1t5oa_ c.124.1.5 (A:) Putative eIF-2B delta-subunit {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 340
Score = 257 bits (657), Expect = 4e-84
Identities = 135/345 (39%), Positives = 189/345 (54%), Gaps = 18/345 (5%)
Query: 12 SLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGAPAIAMAAALSLAV 71
SL+SI + G L+L+DQ KLP + +E R+ + AI+++ VRGAPA+ A A +A+
Sbjct: 1 SLRSIFWDDG-LKLIDQTKLPEKLEVIECRNVEELADAIKKLAVRGAPALEAAGAYGIAL 59
Query: 72 EVFNLNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSV 131
+ L ++L S+RPTAVNL + K V
Sbjct: 60 AA--REREFADVDELKEHLKKAADFLASTRPTAVNLFVGIERALNAALK----GESVEEV 113
Query: 132 FQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALG 191
+ + AE + ++DV N+ +G YGA VLT+CN G LAT +GTALG
Sbjct: 114 KELALREAEKLAEEDVERNRKMGEYGAEL-----LEDGDVVLTYCNAGRLATVDWGTALG 168
Query: 192 VIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAV 251
V+R+ +G R ETRP NQGSRLT +EL+ D I TLI DS +M+ G V V
Sbjct: 169 VVRSAVEQGKEIRVIACETRPLNQGSRLTCWELMEDGIDVTLITDSMVGIVMQKGMVDKV 228
Query: 252 IVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAK 311
IVGADR+ + NKIGTY++++ AK HNI FYVAAP + D + +++VIEER +
Sbjct: 229 IVGADRIVRD-AVFNKIGTYTVSVVAKHHNIPFYVAAPKATFDWER-TAKDVVIEERPRE 286
Query: 312 ELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKQGVVT 356
EL+ Q+A + V+NPAFD TP +T +ITE GV+
Sbjct: 287 ELIFCG---KRQIAPLNVKVYNPAFDPTPLENVTALITEY-GVIY 327
>d1vb5a_ c.124.1.5 (A:) Putative eIF-2B subunit 2-like protein
PH0440 {Pyrococcus horikoshii [TaxId: 53953]}
Length = 274
Score = 197 bits (501), Expect = 1e-61
Identities = 71/313 (22%), Positives = 113/313 (36%), Gaps = 49/313 (15%)
Query: 44 ADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFLGNKLEYLVSSRPT 103
+ ++ ++GA +A A + L+ + + E +V P+
Sbjct: 6 LEILREMKRERIKGASWLAKKGAEAFLTLAEELDE-----SLLEDAIMELREEVVKVNPS 60
Query: 104 AVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQN 163
+L + A + + A L+ + + S GA
Sbjct: 61 MASLYNLARFIPVTNRRDIL------------KSRALEFLRRMEEAKRELASIGAQ---- 104
Query: 164 QLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFE 223
L + ++TH T L +IR + +E+ P +G A E
Sbjct: 105 -LIDDGDVIITHSF--------SSTVLEIIRTAKERKKRFKVILTESSPDYEGLH-LARE 154
Query: 224 LVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNIL 283
L I +I D+ + S IVGAD + +G NK GTY LAL + I
Sbjct: 155 LEFSGIEFEVITDAQMGLFCR--EASIAIVGADMITKDGYVVNKAGTYLLALACHENAIP 212
Query: 284 FYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANL 343
FYVAA TL SG ++++ ER + + + N FDVTP
Sbjct: 213 FYVAAETYKFHPTLKSG-DVMLMERD--------------LIRGNVRIRNVLFDVTPWKY 257
Query: 344 ITGIITEKQGVVT 356
+ GIITE G+V
Sbjct: 258 VRGIITEL-GIVI 269
>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase,
N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}
Length = 560
Score = 30.7 bits (68), Expect = 0.31
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Query: 133 QAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAG----YGT 188
+A+ AA DV G+ A Q K TH N G+L+TAG GT
Sbjct: 417 KAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGT 476
Query: 189 ALGVIRALHSE 199
A G + A ++
Sbjct: 477 AAGQMHAYSAD 487
>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly
(Drosophila lebanonensis) [TaxId: 7225]}
Length = 254
Score = 26.5 bits (58), Expect = 5.3
Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 270 TYSLALCAKFHNILFYVAAP-LTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAA 326
T SLA A + Y P +T L + + +E R A+ LL EQ
Sbjct: 162 TNSLAKLAPITGVTAYSINPGITRTPLVHTFNSWLDVEPRVAELLLSHPTQTSEQCGQ 219
>d2oufa1 a.292.1.1 (A:13-92) Hypothetical protein HP0242
{Helicobacter pylori [TaxId: 210]}
Length = 80
Score = 24.7 bits (54), Expect = 5.8
Identities = 10/47 (21%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 278 KFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQV 324
K+++I+F+ + L+ +L E ++E + E + L E+
Sbjct: 5 KWNDIIFHASKKLSKKEL------ERLLELLALLETFIEKEDLEEKF 45
>d1q1ra3 d.87.1.1 (A:320-422) Putidaredoxin reductase {Pseudomonas
putida [TaxId: 303]}
Length = 103
Score = 24.8 bits (54), Expect = 9.5
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 101 RPTAVNLSDAAAKLKEIISKAAATASEA 128
L D + LKEII+ A A S A
Sbjct: 76 PVEPNLLGDESVPLKEIIAAAKAELSSA 103
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.129 0.355
Gapped
Lambda K H
0.267 0.0474 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,244,037
Number of extensions: 54451
Number of successful extensions: 173
Number of sequences better than 10.0: 1
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 14
Length of query: 374
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 287
Effective length of database: 1,213,086
Effective search space: 348155682
Effective search space used: 348155682
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.2 bits)