BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017295
(374 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OHF|A Chain A, Crystal Structure Of Human Ola1 In Complex With Amppcp
Length = 396
Score = 436 bits (1122), Expect = e-123, Method: Compositional matrix adjust.
Identities = 229/397 (57%), Positives = 279/397 (70%), Gaps = 25/397 (6%)
Query: 1 MPPKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE 60
MPPK P PI+GRF + LKIGIVGLPNVGKST FN LT AENFPFCTI+
Sbjct: 1 MPPKKGGDGIKPP--PIIGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTID 58
Query: 61 PNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQG------------- 107
PNE+RV +PDERF++LCQ KP S +PAFL + DIAGLV+GAH GQG
Sbjct: 59 PNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACD 118
Query: 108 -------AFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQ 160
AFED DI HV+ SVDP+RD+E+I EL+LKD E + I+ +EK R DK+
Sbjct: 119 GIFHLTRAFEDDDITHVEGSVDPIRDIEIIHEELQLKDEEMIGPIIDKLEKVAVRGGDKK 178
Query: 161 LKIEHELCQRVKAWLQDGKD-VRL-GDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQR 218
LK E+++ +VK+W+ D K VR DW +IE+LN LT+KP+VYLVN++EKDY R
Sbjct: 179 LKPEYDIMCKVKSWVIDQKKPVRFYHDWNDKEIEVLNKHLFLTSKPMVYLVNLSEKDYIR 238
Query: 219 KKNKFLPKIHAWVQEHG-GEQIIPFSCALERNLADMPPDEAAKYCEENKVQSALPKIIKT 277
KKNK+L KI WV ++ G +IPFS ALE L ++ +E KY E N QSALPKIIK
Sbjct: 239 KKNKWLIKIKEWVDKYDPGALVIPFSGALELKLQELSAEERQKYLEANMTQSALPKIIKA 298
Query: 278 GFSAINLIYFFTAGPDEVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVMKFDDLKELGS 337
GF+A+ L YFFTAGPDEV+ W IR+ TKAPQAAG IHTDFE+GFI AEVMK++D KE GS
Sbjct: 299 GFAALQLEYFFTAGPDEVRAWTIRKGTKAPQAAGKIHTDFEKGFIMAEVMKYEDFKEEGS 358
Query: 338 EPAVKAAGKYKQEGKTYVVQDGDIIFFKFNVSGGGKK 374
E AVKAAGKY+Q+G+ Y+V+DGDIIFFKFN KK
Sbjct: 359 ENAVKAAGKYRQQGRNYIVEDGDIIFFKFNTPQQPKK 395
>pdb|1NI3|A Chain A, Structure Of The Schizosaccharomyces Pombe Ychf Gtpase
Length = 392
Score = 348 bits (893), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 179/375 (47%), Positives = 245/375 (65%), Gaps = 29/375 (7%)
Query: 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTK--LAIPAENFPFCTIEPNEARVNIPDERFEWL 76
GR ++LK GIVG PNVGKST F +TK L PA N+P+ TI+P EA+V +PDERF+WL
Sbjct: 15 GRPGNNLKTGIVGXPNVGKSTFFRAITKSVLGNPA-NYPYATIDPEEAKVAVPDERFDWL 73
Query: 77 CQLFKPKSAVPAFLEIHDIAGLVRGAHEGQG--------------------AFEDPDIIH 116
C+ +KPKS VPAFL + DIAGL +GA G G AF+D +IIH
Sbjct: 74 CEAYKPKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFDDAEIIH 133
Query: 117 VDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND----KQLKIEHELCQRVK 172
V+ VDP+RDL +I EL +KD EF+E+ +E + K R + K K E + ++V
Sbjct: 134 VEGDVDPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLEXKAKKEEQAIIEKVY 193
Query: 173 AWLQDGKD-VRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWV 231
+L + K +R GDW ++EI+N+ LLTAKPV+YLVN +E+D+ R+KNK+LPKI W+
Sbjct: 194 QYLTETKQPIRKGDWSNREVEIINSLYLLTAKPVIYLVNXSERDFLRQKNKYLPKIKKWI 253
Query: 232 QEHG-GEQIIPFSCALERNLADMPPDEAAKYCEENKVQSALPKIIKTGFSAINLIYFFTA 290
E+ G+ +IP S A E L + +EA + C++ +S LPKII TG++A+NLI +FT
Sbjct: 254 DENSPGDTLIPXSVAFEERLTNFTEEEAIEECKKLNTKSXLPKIIVTGYNALNLINYFTC 313
Query: 291 GPDEVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVMKFDDLKELGSEPAVKAAGKYKQE 350
G DEV+ W IR+ TKAPQAAG IHTDFE+ F+ E+ + DL + +E A +AAGKY +
Sbjct: 314 GEDEVRSWTIRKGTKAPQAAGVIHTDFEKAFVVGEIXHYQDLFDYKTENACRAAGKYLTK 373
Query: 351 GKTYVVQDGDIIFFK 365
GK YV + GDI +K
Sbjct: 374 GKEYVXESGDIAHWK 388
>pdb|1JAL|A Chain A, Ychf Protein (Hi0393)
pdb|1JAL|B Chain B, Ychf Protein (Hi0393)
Length = 363
Score = 268 bits (684), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 137/365 (37%), Positives = 216/365 (59%), Gaps = 25/365 (6%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS 84
K GIVGLPNVGKSTLFN LTK I A N+PFCTIEPN V +PD R + L ++ KP+
Sbjct: 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPER 62
Query: 85 AVPAFLEIHDIAGLVRGAHEGQG--------------------AFEDPDIIHVDDSVDPV 124
+P +E DIAGLV GA +G+G FE+ DI+HV +DP+
Sbjct: 63 ILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPL 122
Query: 125 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 184
D++ I+ EL L D++ ER I+ ++K K DK+ K E + +++ L++ +R
Sbjct: 123 DDIDTINTELALADLDSCERAIQRLQKRAK-GGDKEAKFELSVMEKILPVLENAGMIRSV 181
Query: 185 DWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSC 244
+++ + ++ LT KP +Y+ N+NE ++ N +L ++ + G ++P
Sbjct: 182 GLDKEELQAIKSYNFLTLKPTMYIANVNEDGFE--NNPYLDRVREIAAKEGA-VVVPVCA 238
Query: 245 ALERNLADMPPDEAAKYCEENKVQS-ALPKIIKTGFSAINLIYFFTAGPDEVKCWQIRRQ 303
A+E +A++ +E ++ ++ ++ L ++I+ G++ +NL +FTAG EV+ W +
Sbjct: 239 AIESEIAELDDEEKVEFLQDLGIEEPGLNRVIRAGYALLNLQTYFTAGVKEVRAWTVSVG 298
Query: 304 TKAPQAAGTIHTDFERGFICAEVMKFDDLKELGSEPAVKAAGKYKQEGKTYVVQDGDIIF 363
AP+AA IHTDFE+GFI AEV+ ++D + E K AGK++ EGK Y+VQDGD++
Sbjct: 299 ATAPKAAAVIHTDFEKGFIRAEVIAYEDFIQFNGENGAKEAGKWRLEGKDYIVQDGDVMH 358
Query: 364 FKFNV 368
F+FNV
Sbjct: 359 FRFNV 363
>pdb|2DWQ|A Chain A, Thermus Thermophilus Ychf Gtp-Binding Protein
pdb|2DWQ|B Chain B, Thermus Thermophilus Ychf Gtp-Binding Protein
Length = 368
Score = 247 bits (631), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 149/370 (40%), Positives = 208/370 (56%), Gaps = 31/370 (8%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS 84
L +GIVGLPNVGKSTLFN LT+ A N+PF TI+ N V + DER L + F
Sbjct: 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGE 61
Query: 85 AVPAFLEIH----DIAGLVRGAHEGQG--------------------AFEDPDIIHVDDS 120
VP + H DIAGLV+GAH+G+G F DPD++HV
Sbjct: 62 RVPPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGR 121
Query: 121 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKD 180
VDP+ D EV+ EL L D+ +ERR+E + K R++ ++L + E + + LQ+GK
Sbjct: 122 VDPLEDAEVVETELLLADLATLERRLERLRKE-ARADRERLPL-LEAAEGLYVHLQEGKP 179
Query: 181 VRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQE--HGGEQ 238
R A L LLTAKPV+Y+ N+ E+D + P++ A ++ G +
Sbjct: 180 ARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGN--PQVEAVRRKALEEGAE 237
Query: 239 IIPFSCALERNLADMPPDEAAKYCEENKVQ-SALPKIIKTGFSAINLIYFFTAGPDEVKC 297
++ S LE LA++ +EA + +Q S L ++ + G+ A++L+ FFTAG EV+
Sbjct: 238 VVVVSARLEAELAELSGEEARELLAAYGLQESGLQRLARAGYRALDLLTFFTAGEKEVRA 297
Query: 298 WQIRRQTKAPQAAGTIHTDFERGFICAEVMKFDDLKELGSEPAVKAAGKYKQEGKTYVVQ 357
W +RR TKAP+AAG IH+D ERGFI AEV+ +D L E G K G + EGK Y VQ
Sbjct: 298 WTVRRGTKAPRAAGEIHSDMERGFIRAEVIPWDKLVEAGGWARAKERGWVRLEGKDYEVQ 357
Query: 358 DGDIIFFKFN 367
DGD+I+ FN
Sbjct: 358 DGDVIYVLFN 367
>pdb|2DBY|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ychf In
Complexed With Gdp
Length = 368
Score = 246 bits (628), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 149/370 (40%), Positives = 208/370 (56%), Gaps = 31/370 (8%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS 84
L +GIVGLPNVGKSTLFN LT+ A N+PF TI+ N V + DER L + F
Sbjct: 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGE 61
Query: 85 AVPAFLEIH----DIAGLVRGAHEGQG--------------------AFEDPDIIHVDDS 120
VP + H DIAGLV+GAH+G+G F DPD++HV
Sbjct: 62 RVPPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGR 121
Query: 121 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKD 180
VDP+ D EV+ EL L D+ +ERR+E + K R++ ++L + E + + LQ+GK
Sbjct: 122 VDPLEDAEVVETELLLADLATLERRLERLRKE-ARADRERLPL-LEAAEGLYVHLQEGKP 179
Query: 181 VRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQE--HGGEQ 238
R A L LLTAKPV+Y+ N+ E+D + P++ A ++ G +
Sbjct: 180 ARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGN--PQVEAVRRKALEEGAE 237
Query: 239 IIPFSCALERNLADMPPDEAAKYCEENKVQ-SALPKIIKTGFSAINLIYFFTAGPDEVKC 297
++ S LE LA++ +EA + +Q S L ++ + G+ A++L+ FFTAG EV+
Sbjct: 238 VVVVSARLEAELAELSGEEARELLAAYGLQESGLQRLARAGYRALDLLTFFTAGEKEVRA 297
Query: 298 WQIRRQTKAPQAAGTIHTDFERGFICAEVMKFDDLKELGSEPAVKAAGKYKQEGKTYVVQ 357
W +RR TKAP+AAG IH+D ERGFI AEV+ +D L E G K G + EGK Y VQ
Sbjct: 298 WTVRRGTKAPRAAGEIHSDXERGFIRAEVIPWDKLVEAGGWARAKERGWVRLEGKDYEVQ 357
Query: 358 DGDIIFFKFN 367
DGD+I+ FN
Sbjct: 358 DGDVIYVLFN 367
>pdb|1WXQ|A Chain A, Crystal Structure Of Gtp Binding Protein From Pyrococcus
Horikoshii Ot3
Length = 397
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 94/190 (49%), Gaps = 33/190 (17%)
Query: 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEA-RVNIPDERFEWL-C----QL 79
+IG+VG PNVGKST F+ T + + N+PF TIE N I D + L C Q
Sbjct: 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQN 61
Query: 80 FKPKSAVPAF-LEIHDIAGLVRGAHEGQG---AFED-----PDIIHVDDS---VDPVRDL 127
++ ++ + ++ D+AGLV GAHEG+G F D +IHV D+ DP +
Sbjct: 62 YEYRNGLALIPVKXVDVAGLVPGAHEGRGLGNKFLDDLRXASALIHVVDATGKTDP--EG 119
Query: 128 EVISAELRLKDIEFMERRIE---------DVEKSMKRSNDKQLKIEHELCQRVKAWLQDG 178
+ ++DIEF+ER I+ +K KR +++K+E + + + +
Sbjct: 120 QPTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQKIKLESAIAEHLSGIGVNE 179
Query: 179 KDVRLGDWKA 188
DV W+A
Sbjct: 180 NDV----WEA 185
>pdb|1LNZ|A Chain A, Structure Of The Obg Gtp-Binding Protein
pdb|1LNZ|B Chain B, Structure Of The Obg Gtp-Binding Protein
Length = 342
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 66/155 (42%), Gaps = 29/155 (18%)
Query: 3 PKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN 62
P+ S++ E ER I+ +G+VG P+VGKSTL + ++ ++ F T+ PN
Sbjct: 137 PQLSENGEPGKERYIVLELKVLADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPN 196
Query: 63 EARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGAFED--------PDI 114
V D R S V A D+ GL+ GAH+G G I
Sbjct: 197 LGXVETDDGR-----------SFVXA-----DLPGLIEGAHQGVGLGHQFLRHIERTRVI 240
Query: 115 IHVDDSV-----DPVRDLEVISAELRLKDIEFMER 144
+HV D DP D I+ EL ++ ER
Sbjct: 241 VHVIDXSGLEGRDPYDDYLTINQELSEYNLRLTER 275
>pdb|1UDX|A Chain A, Crystal Structure Of The Conserved Protein Tt1381 From
Thermus Thermophilus Hb8
Length = 416
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 27/128 (21%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIP-DERFEWLCQLFKPKSA 85
+G+VG PN GKS+L +T+ +PF T+ PN V + +ERF
Sbjct: 160 VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERF------------ 207
Query: 86 VPAFLEIHDIAGLVRGAHEGQGA--------FEDPDIIHVDDSVD-PVRDLEVISAELRL 136
+ DI G++ GA EG+G +++V D+ D P++ LE + E+
Sbjct: 208 -----TLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGA 262
Query: 137 KDIEFMER 144
D + R
Sbjct: 263 YDPALLRR 270
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 22 SSHLK---IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE 74
SH+K I ++G PNVGKST+FN LT + N+P T+E E E+F+
Sbjct: 2 GSHMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFK 57
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE 74
+I ++G PNVGKST+FN LT + N+P T+E E E+F+
Sbjct: 6 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFK 54
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE 74
+I ++G PNVGKST+FN LT + N+P T+E E E+F+
Sbjct: 5 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFK 53
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE 74
+I ++G PNVGKST+FN LT + N+P T+E E E+F+
Sbjct: 5 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFK 53
>pdb|3K53|A Chain A, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|B Chain B, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|C Chain C, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|D Chain D, Crystal Structure Of Nfeob From P. Furiosus
Length = 271
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73
+ +VG PNVGK+T+FN LT L N+P T+E E + ++ F
Sbjct: 6 VALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEF 52
>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
Length = 258
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEA 64
+K+ + G PNVGK++LFN LT N+P T+E E
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEG 45
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEA 64
+K+ + G PNVGK++LFN LT N+P T+E E
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEG 45
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob
Iron Iransporter
Length = 168
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEA 64
+K+ + G PNVGK++LFN LT N+P T+E E
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEG 45
>pdb|3HYR|A Chain A, Structural Insight Into G Protein Coupling And
Regulation Of Fe2+ Membrane Transport
pdb|3HYR|B Chain B, Structural Insight Into G Protein Coupling And
Regulation Of Fe2+ Membrane Transport
pdb|3HYR|C Chain C, Structural Insight Into G Protein Coupling And
Regulation Of Fe2+ Membrane Transport
Length = 270
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73
L IG++G PN GK+TLFN LT N+ T+E E + + D +
Sbjct: 4 LTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQV 52
>pdb|3HYT|A Chain A, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|B Chain B, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|C Chain C, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
Length = 270
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73
L IG++G PN GK+TLFN LT N+ T+E E + + D +
Sbjct: 4 LTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQV 52
>pdb|3I8S|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8X|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I92|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
Length = 274
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73
L IG++G PN GK+TLFN LT N+ T+E E + + D +
Sbjct: 4 LTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQV 52
>pdb|4A9A|A Chain A, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
pdb|4A9A|B Chain B, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
Length = 376
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 17/81 (20%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAV 86
+G VG P+VGKSTL + LT A + F T+ V +P + + K A
Sbjct: 75 VGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTL------VTVPG--------VIRYKGAK 120
Query: 87 PAFLEIHDIAGLVRGAHEGQG 107
+++ D+ G++ GA +G+G
Sbjct: 121 ---IQMLDLPGIIDGAKDGRG 138
>pdb|2QTF|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus
pdb|2QTH|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus In
Complex With Gdp
pdb|3KXI|A Chain A, Crystal Structure Of Ssgbp And Gdp Complex
Length = 364
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72
IGIVG N GK++LFN+LT L + F T+ P + I + +
Sbjct: 182 IGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRK 227
>pdb|3KXL|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235s
pdb|3KXL|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235s
Length = 364
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72
IGIVG N GK++LFN+LT L + F T+ P + I + +
Sbjct: 182 IGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRK 227
>pdb|3KXK|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235p
pdb|3KXK|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235p
Length = 364
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72
IGIVG N GK++LFN+LT L + F T+ P + I + +
Sbjct: 182 IGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRK 227
>pdb|2WIA|A Chain A, Crystal Structures Of The N-Terminal Intracellular
Domain Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIA|B Chain B, Crystal Structures Of The N-Terminal Intracellular
Domain Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIB|A Chain A, Crystal Structures Of The N-Terminal Intracellular
Domain Of Feob From Klebsiella Pneumoniae In Gdp
Binding State
pdb|2WIB|B Chain B, Crystal Structures Of The N-Terminal Intracellular
Domain Of Feob From Klebsiella Pneumoniae In Gdp
Binding State
pdb|2WIC|A Chain A, Crystal Structures Of The N-Terminal Intracellular
Domain Of Feob From Klebsiella Pneumoniae In Gmppnp
Binding State
Length = 267
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNE 63
L +G++G PN GK+TLFN LT N+ T+E E
Sbjct: 4 LTVGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKE 42
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 22 SSHLKIGIVGLPNVGKSTLFNT-LTKLAIPAENFPFCTIEPNEARVNIPDERFEWL 76
+ +K+ IVG PNVGKSTLFN L K P T +P + V I ++ ++
Sbjct: 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFV 233
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/18 (83%), Positives = 15/18 (83%)
Query: 29 IVGLPNVGKSTLFNTLTK 46
IVG PNVGKSTLFN L K
Sbjct: 6 IVGRPNVGKSTLFNKLVK 23
>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of
Enga From Thermus Thermophilus Hb8
pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of
Enga From Thermus Thermophilus Hb8
Length = 161
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 26 KIGIVGLPNVGKSTLFN-TLTKLAIPAENFPFCTIEPNEARVNIPDERF 73
K+ IVG PNVGKS+LFN L K + + P T + E V RF
Sbjct: 3 KVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRF 51
>pdb|3IBY|A Chain A, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|B Chain B, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|C Chain C, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|D Chain D, Structure Of Cytosolic Domain Of L. Pneumophila Feob
Length = 256
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 29 IVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE 60
++G PN GK+TLFN LT N+P T+E
Sbjct: 6 LIGNPNCGKTTLFNALTNANQRVGNWPGVTVE 37
>pdb|3O4X|E Chain E, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|H Chain H, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|G Chain G, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|F Chain F, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
Length = 467
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 75 WLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGAFEDPDIIHVDDSVDPVRDLEVISAEL 134
+LC+L KSA +H +A L H P+++ D + V +SAE
Sbjct: 253 FLCKLRDTKSADQKMTLLHFLAELCENDH--------PEVLKFPDELAHVEKASRVSAEN 304
Query: 135 RLKDIEFMERRIEDVEKSMK 154
K ++ M+++I DVE+ ++
Sbjct: 305 LQKSLDQMKKQIADVERDVQ 324
>pdb|3OBV|E Chain E, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|F Chain F, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|G Chain G, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|H Chain H, Autoinhibited Formin Mdia1 Structure
Length = 457
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 75 WLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGAFEDPDIIHVDDSVDPVRDLEVISAEL 134
+LC+L KSA +H +A L H P+++ D + V +SAE
Sbjct: 234 FLCKLRDTKSADQKMTLLHFLAELCENDH--------PEVLKFPDELAHVEKASRVSAEN 285
Query: 135 RLKDIEFMERRIEDVEKSMK 154
K ++ M+++I DVE+ ++
Sbjct: 286 LQKSLDQMKKQIADVERDVQ 305
>pdb|2QM7|A Chain A, Meab, A Bacterial Homolog Of Mmaa, Bound To Gdp
pdb|2QM7|B Chain B, Meab, A Bacterial Homolog Of Mmaa, Bound To Gdp
Length = 337
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVN 67
+++GI G+P VGKST + L L A ++P+ R
Sbjct: 56 IRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTG 99
>pdb|2QM8|A Chain A, Meab, A Bacterial Homolog Of Mmaa, In The Nucleotide
Free Form
pdb|2QM8|B Chain B, Meab, A Bacterial Homolog Of Mmaa, In The Nucleotide
Free Form
Length = 337
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVN 67
+++GI G+P VGKST + L L A ++P+ R
Sbjct: 56 IRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTG 99
>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein
Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With
Gdp
Length = 357
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCT 58
+ I G PNVGKSTL LT ++PF T
Sbjct: 170 VVIAGHPNVGKSTLLKALTTAKPEIASYPFTT 201
>pdb|1V9D|A Chain A, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|B Chain B, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|C Chain C, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|D Chain D, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
Length = 340
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 75 WLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGAFEDPDIIHVDDSVDPVRDLEVISAEL 134
+LC+L KSA +H +A L H P+++ D + V +SAE
Sbjct: 163 FLCKLRDTKSADQKMTLLHFLAELCENDH--------PEVLKFPDELAHVEKASRVSAEN 214
Query: 135 RLKDIEFMERRIEDVEKSMK 154
K ++ M+++I DVE+ ++
Sbjct: 215 LQKSLDQMKKQIADVERDVQ 234
>pdb|3LX5|A Chain A, Crystal Structure Of Mgmppnp-Bound Nfeob From S.
Thermophilus
pdb|3LX8|A Chain A, Crystal Structure Of Gdp-Bound Nfeob From S.
Thermophilus
pdb|3SS8|A Chain A, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
pdb|3SS8|B Chain B, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
Length = 272
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE 60
S +I ++G PN GK++LFN +T N+P T+E
Sbjct: 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVE 39
>pdb|3B1X|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E66a
Mutant Bound To Gmppnp
pdb|3B1X|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E66a
Mutant Bound To Gmppnp
Length = 272
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE 60
S +I ++G PN GK++LFN +T N+P T+E
Sbjct: 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVE 39
>pdb|3B1V|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a
Mutant Bound To Mgmppnp
pdb|3B1W|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a
Mutant Bound To Gdp
pdb|3B1W|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E67a
Mutant Bound To Gdp
pdb|3B1W|C Chain C, Crystal Structure Of An S. Thermophilus Nfeob E67a
Mutant Bound To Gdp
pdb|3B1W|D Chain D, Crystal Structure Of An S. Thermophilus Nfeob E67a
Mutant Bound To Gdp
Length = 272
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE 60
S +I ++G PN GK++LFN +T N+P T+E
Sbjct: 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVE 39
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 21 FSSHLKIGIVGLPNVGKSTLFN 42
+ LK+ IVG PNVGKS+L N
Sbjct: 221 LRTGLKVAIVGRPNVGKSSLLN 242
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 29 IVGLPNVGKSTLFNTLTK 46
I+G+PNVGKSTL N L K
Sbjct: 125 IIGIPNVGKSTLINRLAK 142
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 19/25 (76%), Gaps = 2/25 (8%)
Query: 27 IGIVGLPNVGKSTLFNTL--TKLAI 49
+ IVG PNVGKSTL N L TK++I
Sbjct: 12 VAIVGKPNVGKSTLLNNLLGTKVSI 36
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The
3' End Of 16s Rrna
Length = 308
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 19/25 (76%), Gaps = 2/25 (8%)
Query: 27 IGIVGLPNVGKSTLFNTL--TKLAI 49
+ IVG PNVGKSTL N L TK++I
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVSI 37
>pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 292
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 14/18 (77%), Positives = 14/18 (77%)
Query: 27 IGIVGLPNVGKSTLFNTL 44
I IVG PNVGKSTL N L
Sbjct: 8 IAIVGRPNVGKSTLLNKL 25
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAI 49
+ IVG PNVGKSTL N L + +
Sbjct: 10 VAIVGKPNVGKSTLLNNLLGVKV 32
>pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor
Domain Of The 16s Rrna Within The Thermus Thermophilus
30s Subunit.
pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp
pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp
Length = 301
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 14/18 (77%), Positives = 14/18 (77%)
Query: 27 IGIVGLPNVGKSTLFNTL 44
I IVG PNVGKSTL N L
Sbjct: 11 IAIVGRPNVGKSTLLNKL 28
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDE 71
+ L++ IVG PNVGKSTL N L E+ T P R I +E
Sbjct: 240 LNRGLRMVIVGKPNVGKSTLLNRLLN-----EDRAIVTDIPGTTRDVISEE 285
>pdb|3B1Z|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35s
Mutant Without Nucleotide
Length = 272
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE 60
S +I ++G PN GK++LFN +T N+P ++E
Sbjct: 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVSVE 39
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 15/18 (83%)
Query: 27 IGIVGLPNVGKSTLFNTL 44
+ IVG PNVGKST+FN +
Sbjct: 6 VAIVGRPNVGKSTIFNRI 23
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 26/62 (41%), Gaps = 9/62 (14%)
Query: 23 SHLK---IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQL 79
SH+ + IVG PNVGKST+FN I E P R I EWL
Sbjct: 19 SHMGKPVVAIVGRPNVGKSTIFNR-----IAGERISIVEDTPGVTRDRIYSSA-EWLNYD 72
Query: 80 FK 81
F
Sbjct: 73 FN 74
>pdb|3B1Y|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35a
Mutant Bound To Gdp
Length = 272
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE 60
S +I ++G PN GK++LFN +T N+P +E
Sbjct: 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVAVE 39
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 45/108 (41%), Gaps = 29/108 (26%)
Query: 23 SHLKIGIVGLPNVGKSTLFNTLTKLAI----PAENFPFCTIEPNEARVNIPDERFEWLCQ 78
S ++I ++GL N GK+TL L I P + F +++ Q
Sbjct: 3 SEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQS----------------Q 46
Query: 79 LFKPKSAVPAFLEIHDIAGLVRGAHEGQGAFEDPDI-IHVDDSVDPVR 125
FK L + DI GL + + FE+ DI I+V DS D R
Sbjct: 47 GFK--------LNVWDIGGLRKIRPYWRSYFENTDILIYVIDSADRKR 86
>pdb|3TAH|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob N11a
Mutant Bound To Mgdp
pdb|3TAH|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob N11a
Mutant Bound To Mgdp
Length = 272
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE 60
S +I ++G P GK++LFN +T N+P T+E
Sbjct: 2 SMTEIALIGNPASGKTSLFNLITGHNQRVGNWPGVTVE 39
>pdb|1A5Z|A Chain A, Lactate Dehydrogenase From Thermotoga Maritima (tmldh)
Length = 319
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTK 46
+KIGIVGL VG ST F L K
Sbjct: 1 MKIGIVGLGRVGSSTAFALLMK 22
>pdb|2A45|H Chain H, Crystal Structure Of The Complex Between Thrombin And The
Central "e" Region Of Fibrin
pdb|2A45|K Chain K, Crystal Structure Of The Complex Between Thrombin And The
Central "e" Region Of Fibrin
Length = 91
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 288 FTAGPDEVKCWQIRRQTKAPQAAGTIHTDFERGFIC 323
+ A P + Q + + KAP A G +H D + G +C
Sbjct: 27 YRARPAKAAATQKKVERKAPDAGGCLHADPDLGVLC 62
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 21 FSSHLKIGIVGLPNVGKSTLFNTL 44
F ++ IVG+PN GKST+ N L
Sbjct: 96 FDRLARVLIVGVPNTGKSTIINKL 119
>pdb|3C48|A Chain A, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure.
pdb|3C48|B Chain B, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure
Length = 438
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 248 RNLADMPPDEAAKYCEENKVQSALPKIIKTGFSAINLIYFFTAGPDEVKC 297
R+ +D P EA + CE+ V +A + T +L++ + A PD +
Sbjct: 163 RDDSDTPESEARRICEQQLVDNADVLAVNTQEEMQDLMHHYDADPDRISV 212
>pdb|2QU8|A Chain A, Crystal Structure Of Putative Nucleolar Gtp-Binding
Protein 1 Pff0625w From Plasmodium Falciparum
Length = 228
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCT 58
I + G PNVGKS+ N +++ + +++ F T
Sbjct: 32 IILSGAPNVGKSSFMNIVSRANVDVQSYSFTT 63
>pdb|3C4Q|A Chain A, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4Q|B Chain B, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4V|A Chain A, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P.
pdb|3C4V|B Chain B, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P
Length = 426
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 248 RNLADMPPDEAAKYCEENKVQSALPKIIKTGFSAINLIYFFTAGPDEVKC 297
R+ +D P EA + CE+ V +A + T +L++ + A PD +
Sbjct: 143 RDDSDTPESEARRICEQQLVDNADVLAVNTQEEMQDLMHHYDADPDRISV 192
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,899,388
Number of Sequences: 62578
Number of extensions: 514026
Number of successful extensions: 1670
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1585
Number of HSP's gapped (non-prelim): 68
length of query: 374
length of database: 14,973,337
effective HSP length: 100
effective length of query: 274
effective length of database: 8,715,537
effective search space: 2388057138
effective search space used: 2388057138
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)