Query 017295
Match_columns 374
No_of_seqs 428 out of 3407
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 07:18:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017295.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017295hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00258 GTP-binding protein; 100.0 1.8E-82 3.9E-87 617.4 32.6 357 13-369 10-389 (390)
2 PRK09601 GTP-binding protein Y 100.0 1.6E-81 3.5E-86 604.2 31.3 343 23-368 1-364 (364)
3 TIGR00092 GTP-binding protein 100.0 2.2E-79 4.8E-84 589.4 31.4 342 24-368 2-368 (368)
4 COG0012 Predicted GTPase, prob 100.0 1.4E-77 3E-82 567.8 25.2 344 23-368 1-372 (372)
5 KOG1491 Predicted GTP-binding 100.0 5.9E-77 1.3E-81 550.6 26.8 364 1-368 1-391 (391)
6 PRK09602 translation-associate 100.0 5.6E-54 1.2E-58 422.1 26.1 316 25-365 2-393 (396)
7 COG1163 DRG Predicted GTPase [ 100.0 2.9E-48 6.3E-53 358.6 13.9 281 24-365 63-363 (365)
8 cd01900 YchF YchF subfamily. 100.0 1.7E-41 3.6E-46 317.5 19.8 253 27-282 1-274 (274)
9 PF06071 YchF-GTPase_C: Protei 100.0 6.3E-43 1.4E-47 262.8 6.2 84 284-367 1-84 (84)
10 cd04867 TGS_YchF_C TGS_YchF_C: 100.0 2.9E-42 6.4E-47 257.4 7.0 83 284-366 1-83 (83)
11 KOG1486 GTP-binding protein DR 100.0 2.6E-34 5.7E-39 256.7 12.2 288 14-365 54-362 (364)
12 KOG1487 GTP-binding protein DR 100.0 4.2E-32 9.1E-37 243.5 6.7 276 26-365 61-356 (358)
13 cd01899 Ygr210 Ygr210 subfamil 99.9 4.3E-27 9.3E-32 225.4 15.0 228 27-262 1-268 (318)
14 COG1120 FepC ABC-type cobalami 99.9 7.1E-24 1.5E-28 195.3 3.2 162 13-188 13-225 (258)
15 cd04938 TGS_Obg-like TGS_Obg-l 99.9 1.6E-22 3.4E-27 152.8 6.5 65 284-366 1-76 (76)
16 cd01896 DRG The developmentall 99.9 1.6E-21 3.4E-26 180.0 9.0 215 26-290 2-233 (233)
17 COG1126 GlnQ ABC-type polar am 99.8 7.1E-22 1.5E-26 174.7 5.1 159 13-185 13-219 (240)
18 COG4152 ABC-type uncharacteriz 99.8 1.7E-21 3.8E-26 174.8 6.3 160 13-186 13-214 (300)
19 KOG1489 Predicted GTP-binding 99.8 7.7E-21 1.7E-25 176.0 8.4 82 26-123 198-287 (366)
20 COG0536 Obg Predicted GTPase [ 99.8 3.8E-20 8.2E-25 173.4 11.7 78 27-120 162-247 (369)
21 COG3842 PotA ABC-type spermidi 99.8 8.7E-21 1.9E-25 182.2 7.3 161 13-187 16-222 (352)
22 COG0411 LivG ABC-type branched 99.8 1E-21 2.2E-26 177.0 -0.2 162 13-188 15-236 (250)
23 COG4559 ABC-type hemin transpo 99.8 1.4E-20 3E-25 165.8 6.0 162 14-187 13-226 (259)
24 COG1121 ZnuC ABC-type Mn/Zn tr 99.8 6E-21 1.3E-25 175.1 3.7 156 16-186 18-222 (254)
25 PRK12296 obgE GTPase CgtA; Rev 99.8 1.3E-19 2.9E-24 181.8 12.3 85 21-122 156-248 (500)
26 COG1131 CcmA ABC-type multidru 99.8 6E-21 1.3E-25 181.7 1.4 158 14-185 17-220 (293)
27 COG1137 YhbG ABC-type (unclass 99.8 1E-21 2.3E-26 171.4 -3.6 161 13-187 15-224 (243)
28 COG1125 OpuBA ABC-type proline 99.8 1.9E-20 4.2E-25 169.1 3.6 159 14-186 13-220 (309)
29 COG1118 CysA ABC-type sulfate/ 99.8 3.8E-20 8.2E-25 171.3 4.7 160 14-187 14-223 (345)
30 COG3839 MalK ABC-type sugar tr 99.8 2.4E-20 5.3E-25 178.2 3.4 157 17-187 18-219 (338)
31 COG1127 Ttg2A ABC-type transpo 99.8 3.1E-20 6.8E-25 166.7 1.6 161 13-187 19-231 (263)
32 PRK13537 nodulation ABC transp 99.8 3E-20 6.4E-25 178.2 1.3 159 14-186 19-222 (306)
33 PRK12297 obgE GTPase CgtA; Rev 99.8 9.1E-19 2E-23 173.6 11.8 79 26-121 160-247 (424)
34 cd01666 TGS_DRG_C TGS_DRG_C: 99.8 2.1E-19 4.6E-24 134.9 5.4 70 284-365 1-74 (75)
35 COG1135 AbcC ABC-type metal io 99.8 2E-19 4.3E-24 166.9 5.9 160 14-187 18-227 (339)
36 COG1116 TauB ABC-type nitrate/ 99.8 1E-19 2.2E-24 165.2 3.8 150 14-177 15-206 (248)
37 COG4604 CeuD ABC-type enteroch 99.8 1.1E-19 2.3E-24 158.5 3.5 162 13-188 12-222 (252)
38 PRK13536 nodulation factor exp 99.8 6E-20 1.3E-24 178.3 0.8 159 14-186 53-256 (340)
39 COG3638 ABC-type phosphate/pho 99.8 3.4E-19 7.5E-24 159.6 4.7 163 12-188 14-234 (258)
40 PF02421 FeoB_N: Ferrous iron 99.8 6E-19 1.3E-23 151.8 6.0 59 25-100 1-59 (156)
41 TIGR01188 drrA daunorubicin re 99.8 1.3E-19 2.9E-24 173.5 1.4 158 14-185 5-207 (302)
42 COG4555 NatA ABC-type Na+ tran 99.8 7.4E-20 1.6E-24 160.0 -0.7 160 15-188 15-219 (245)
43 COG0410 LivF ABC-type branched 99.7 3.7E-19 8.1E-24 159.2 2.4 160 13-186 14-221 (237)
44 COG1117 PstB ABC-type phosphat 99.7 2.4E-18 5.2E-23 152.0 7.0 165 13-186 18-232 (253)
45 COG1134 TagH ABC-type polysacc 99.7 9.2E-19 2E-23 158.1 4.4 156 12-187 37-232 (249)
46 PRK09536 btuD corrinoid ABC tr 99.7 3.1E-19 6.7E-24 176.4 0.7 159 14-186 15-223 (402)
47 cd03261 ABC_Org_Solvent_Resist 99.7 6.5E-19 1.4E-23 162.7 2.3 158 14-185 12-220 (235)
48 COG3840 ThiQ ABC-type thiamine 99.7 2.5E-18 5.5E-23 148.2 5.7 153 21-187 22-215 (231)
49 PRK12299 obgE GTPase CgtA; Rev 99.7 2.5E-17 5.4E-22 159.4 12.9 83 25-123 159-249 (335)
50 PRK11650 ugpC glycerol-3-phosp 99.7 5.3E-19 1.1E-23 172.7 1.1 159 14-186 16-219 (356)
51 TIGR02314 ABC_MetN D-methionin 99.7 5.5E-19 1.2E-23 171.5 0.5 158 15-186 18-225 (343)
52 PRK11432 fbpC ferric transport 99.7 7.8E-19 1.7E-23 171.2 1.3 158 14-185 18-220 (351)
53 cd03259 ABC_Carb_Solutes_like 99.7 1E-18 2.2E-23 159.0 1.6 154 15-182 13-211 (213)
54 TIGR03265 PhnT2 putative 2-ami 99.7 8.9E-19 1.9E-23 171.0 1.3 159 14-186 16-219 (353)
55 TIGR01288 nodI ATP-binding ABC 99.7 8.6E-19 1.9E-23 168.0 1.2 158 14-185 16-218 (303)
56 COG1160 Predicted GTPases [Gen 99.7 8.5E-18 1.8E-22 163.8 7.4 152 25-253 4-156 (444)
57 cd03265 ABC_DrrA DrrA is the A 99.7 1.7E-18 3.7E-23 158.3 2.1 158 14-185 12-215 (220)
58 TIGR03522 GldA_ABC_ATP gliding 99.7 1E-18 2.3E-23 167.3 0.7 158 14-186 14-216 (301)
59 TIGR01186 proV glycine betaine 99.7 1.1E-18 2.3E-23 170.6 0.7 159 13-185 4-213 (363)
60 cd03218 ABC_YhbG The ABC trans 99.7 2.1E-18 4.6E-23 158.8 2.1 158 14-185 12-216 (232)
61 PRK11000 maltose/maltodextrin 99.7 1.6E-18 3.5E-23 170.3 1.2 158 14-185 15-217 (369)
62 PRK12298 obgE GTPase CgtA; Rev 99.7 9.4E-17 2E-21 158.3 13.6 65 25-105 160-224 (390)
63 COG1124 DppF ABC-type dipeptid 99.7 9.6E-18 2.1E-22 151.3 5.9 156 16-185 21-225 (252)
64 TIGR03258 PhnT 2-aminoethylpho 99.7 1.8E-18 4E-23 169.1 1.4 157 15-185 18-222 (362)
65 TIGR00960 3a0501s02 Type II (G 99.7 2.8E-18 6.1E-23 156.4 2.0 152 15-180 16-216 (216)
66 COG3845 ABC-type uncharacteriz 99.7 9.1E-18 2E-22 164.3 5.6 158 14-185 16-223 (501)
67 cd03293 ABC_NrtD_SsuB_transpor 99.7 2.9E-18 6.3E-23 156.8 1.6 157 15-185 17-217 (220)
68 PRK10851 sulfate/thiosulfate t 99.7 2.3E-18 5E-23 168.0 1.0 158 14-185 14-220 (353)
69 TIGR02729 Obg_CgtA Obg family 99.7 9.6E-17 2.1E-21 155.1 12.0 65 25-105 158-222 (329)
70 cd03269 ABC_putative_ATPase Th 99.7 5E-18 1.1E-22 154.0 2.9 155 14-182 12-208 (210)
71 PRK11153 metN DL-methionine tr 99.7 2.3E-18 4.9E-23 167.7 0.7 158 14-185 17-224 (343)
72 PRK09452 potA putrescine/sperm 99.7 2.3E-18 5E-23 169.1 0.6 158 14-185 26-228 (375)
73 cd03219 ABC_Mj1267_LivG_branch 99.7 3.1E-18 6.7E-23 158.2 1.4 157 15-185 13-226 (236)
74 cd03296 ABC_CysA_sulfate_impor 99.7 3.2E-18 7E-23 158.5 1.5 158 14-185 14-220 (239)
75 cd03268 ABC_BcrA_bacitracin_re 99.7 3.4E-18 7.5E-23 154.9 1.5 155 14-182 12-206 (208)
76 cd03226 ABC_cobalt_CbiO_domain 99.7 3.7E-18 7.9E-23 154.4 1.4 153 15-181 13-205 (205)
77 cd03224 ABC_TM1139_LivF_branch 99.7 4.9E-18 1.1E-22 155.3 2.1 158 14-185 12-215 (222)
78 cd03301 ABC_MalK_N The N-termi 99.7 4.6E-18 1E-22 154.5 1.8 155 15-183 13-212 (213)
79 PRK11607 potG putrescine trans 99.7 3.9E-18 8.4E-23 167.7 1.2 158 14-185 31-233 (377)
80 cd03256 ABC_PhnC_transporter A 99.7 1.1E-17 2.4E-22 154.9 3.9 157 15-185 14-228 (241)
81 cd03258 ABC_MetN_methionine_tr 99.7 5.2E-18 1.1E-22 156.4 1.7 156 16-185 19-224 (233)
82 COG4175 ProV ABC-type proline/ 99.7 1.6E-17 3.5E-22 154.3 4.9 151 22-186 52-249 (386)
83 TIGR03410 urea_trans_UrtE urea 99.7 6.3E-18 1.4E-22 155.5 2.2 159 14-186 12-216 (230)
84 TIGR02673 FtsE cell division A 99.7 6.9E-18 1.5E-22 153.5 2.2 152 14-179 14-214 (214)
85 PRK09493 glnQ glutamine ABC tr 99.7 5.4E-18 1.2E-22 157.0 1.5 158 14-185 13-219 (240)
86 COG1129 MglA ABC-type sugar tr 99.7 9.4E-18 2E-22 167.0 3.3 159 13-185 19-228 (500)
87 COG1122 CbiO ABC-type cobalt t 99.7 7.2E-18 1.6E-22 154.9 2.2 158 15-186 17-223 (235)
88 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.7 7.3E-18 1.6E-22 153.8 2.1 150 15-179 17-217 (218)
89 cd03263 ABC_subfamily_A The AB 99.7 5.2E-18 1.1E-22 155.0 0.9 156 15-185 15-215 (220)
90 cd03266 ABC_NatA_sodium_export 99.7 5.1E-18 1.1E-22 154.8 0.8 153 16-182 19-216 (218)
91 TIGR02315 ABC_phnC phosphonate 99.7 1.2E-17 2.6E-22 154.9 3.2 159 14-186 14-230 (243)
92 cd03294 ABC_Pro_Gly_Bertaine T 99.7 6.8E-18 1.5E-22 159.1 1.6 159 13-185 35-244 (269)
93 cd03215 ABC_Carb_Monos_II This 99.7 7.8E-18 1.7E-22 149.5 1.8 147 17-180 15-182 (182)
94 PRK10895 lipopolysaccharide AB 99.7 8.9E-18 1.9E-22 155.7 2.2 158 14-185 15-220 (241)
95 PRK11264 putative amino-acid A 99.7 9.3E-18 2E-22 156.3 2.2 158 14-185 15-227 (250)
96 PRK11831 putative ABC transpor 99.7 8.5E-18 1.8E-22 158.5 1.9 158 14-185 19-227 (269)
97 cd03298 ABC_ThiQ_thiamine_tran 99.7 1.6E-17 3.5E-22 150.8 3.3 148 21-182 21-209 (211)
98 cd03225 ABC_cobalt_CbiO_domain 99.7 1.2E-17 2.6E-22 151.6 2.2 150 15-178 14-210 (211)
99 cd03264 ABC_drug_resistance_li 99.7 9E-18 2E-22 152.5 1.4 153 15-182 13-209 (211)
100 cd03262 ABC_HisP_GlnQ_permease 99.7 1.3E-17 2.8E-22 151.6 2.3 151 15-179 13-212 (213)
101 PRK13647 cbiO cobalt transport 99.7 8.1E-18 1.7E-22 159.0 0.8 158 15-186 18-222 (274)
102 cd03260 ABC_PstB_phosphate_tra 99.7 1.1E-17 2.4E-22 153.5 1.6 157 14-186 12-224 (227)
103 PRK10070 glycine betaine trans 99.7 7.4E-18 1.6E-22 166.5 0.4 158 14-185 40-248 (400)
104 PRK11231 fecE iron-dicitrate t 99.7 1.7E-17 3.6E-22 155.2 2.7 158 14-185 14-221 (255)
105 cd03292 ABC_FtsE_transporter F 99.7 1.1E-17 2.4E-22 152.2 1.4 151 15-179 14-213 (214)
106 TIGR01184 ntrCD nitrate transp 99.7 1.7E-17 3.7E-22 152.9 2.7 150 21-184 8-197 (230)
107 PRK10908 cell division protein 99.7 1.3E-17 2.7E-22 152.8 1.7 155 14-182 14-217 (222)
108 PRK11614 livF leucine/isoleuci 99.7 8.6E-18 1.9E-22 155.4 0.5 159 14-186 17-221 (237)
109 cd03295 ABC_OpuCA_Osmoprotecti 99.7 1.2E-17 2.7E-22 154.9 1.5 157 15-185 14-219 (242)
110 cd03257 ABC_NikE_OppD_transpor 99.7 1.7E-17 3.7E-22 152.3 2.4 153 16-182 19-226 (228)
111 PRK13637 cbiO cobalt transport 99.7 9.2E-18 2E-22 159.7 0.4 158 15-186 20-229 (287)
112 PRK13641 cbiO cobalt transport 99.7 7.6E-18 1.6E-22 160.3 -0.2 157 15-185 20-228 (287)
113 COG4586 ABC-type uncharacteriz 99.7 2.8E-17 6E-22 150.0 3.4 178 15-212 37-261 (325)
114 PRK13548 hmuV hemin importer A 99.7 2.2E-17 4.8E-22 154.7 2.7 158 14-185 14-224 (258)
115 cd03229 ABC_Class3 This class 99.7 7.9E-18 1.7E-22 149.0 -0.4 145 15-178 13-177 (178)
116 PRK11247 ssuB aliphatic sulfon 99.7 1.1E-17 2.3E-22 156.7 0.5 158 14-185 24-217 (257)
117 TIGR03740 galliderm_ABC gallid 99.7 1.4E-17 3E-22 152.6 1.2 159 14-186 12-208 (223)
118 TIGR03415 ABC_choXWV_ATP choli 99.7 1E-17 2.3E-22 164.4 0.3 160 13-186 35-249 (382)
119 TIGR02769 nickel_nikE nickel i 99.7 2.1E-17 4.6E-22 155.4 2.4 158 14-185 23-234 (265)
120 cd03233 ABC_PDR_domain1 The pl 99.7 2E-17 4.3E-22 149.4 2.0 150 13-182 18-200 (202)
121 PRK11124 artP arginine transpo 99.7 2.1E-17 4.6E-22 153.3 2.2 158 14-185 14-224 (242)
122 PRK13643 cbiO cobalt transport 99.7 1.2E-17 2.6E-22 159.0 0.4 159 15-187 19-229 (288)
123 PRK10619 histidine/lysine/argi 99.7 2.1E-17 4.6E-22 154.6 2.0 158 14-185 17-235 (257)
124 TIGR03873 F420-0_ABC_ATP propo 99.7 2.5E-17 5.3E-22 154.2 2.2 159 14-186 13-221 (256)
125 TIGR03864 PQQ_ABC_ATP ABC tran 99.7 1.8E-17 3.9E-22 153.2 1.2 157 14-185 13-215 (236)
126 cd01669 TGS_Ygr210_C TGS_Ygr21 99.7 1.5E-16 3.2E-21 120.0 5.9 54 295-365 22-75 (76)
127 COG4525 TauB ABC-type taurine 99.7 1.6E-16 3.4E-21 138.6 6.8 159 15-187 18-220 (259)
128 COG1159 Era GTPase [General fu 99.7 2.6E-16 5.7E-21 145.9 8.6 155 25-253 7-163 (298)
129 PRK10575 iron-hydroxamate tran 99.7 3E-17 6.4E-22 154.4 2.4 158 14-185 23-231 (265)
130 cd03213 ABCG_EPDR ABCG transpo 99.7 1.5E-17 3.3E-22 149.2 0.4 151 15-182 22-192 (194)
131 COG2884 FtsE Predicted ATPase 99.7 4.9E-17 1.1E-21 141.2 3.3 159 12-184 12-219 (223)
132 PRK13636 cbiO cobalt transport 99.7 2E-17 4.4E-22 157.0 1.0 160 14-187 18-227 (283)
133 PRK13652 cbiO cobalt transport 99.7 2.3E-17 5E-22 156.2 1.3 158 15-186 17-222 (277)
134 PRK11300 livG leucine/isoleuci 99.7 2.8E-17 6E-22 153.6 1.9 158 14-185 17-237 (255)
135 PRK11248 tauB taurine transpor 99.6 2.7E-17 5.8E-22 153.9 1.7 158 14-185 13-214 (255)
136 TIGR03005 ectoine_ehuA ectoine 99.6 2.5E-17 5.5E-22 153.7 1.5 157 15-185 13-230 (252)
137 COG1136 SalX ABC-type antimicr 99.6 4E-17 8.8E-22 147.8 2.7 151 15-180 18-220 (226)
138 PRK10253 iron-enterobactin tra 99.6 3.6E-17 7.8E-22 153.8 2.4 159 14-186 19-228 (265)
139 TIGR01277 thiQ thiamine ABC tr 99.6 5.2E-17 1.1E-21 147.8 3.2 149 22-184 22-211 (213)
140 cd03230 ABC_DR_subfamily_A Thi 99.6 1.9E-17 4.1E-22 145.9 0.2 144 15-179 13-172 (173)
141 PRK10771 thiQ thiamine transpo 99.6 3.7E-17 8.1E-22 150.7 2.2 151 21-185 22-213 (232)
142 PRK15112 antimicrobial peptide 99.6 3.2E-17 6.9E-22 154.4 1.5 157 15-185 26-233 (267)
143 TIGR03411 urea_trans_UrtD urea 99.6 4.2E-17 9.1E-22 151.2 2.2 157 14-185 14-225 (242)
144 cd03267 ABC_NatA_like Similar 99.6 3.4E-17 7.5E-22 151.4 1.6 155 14-182 33-234 (236)
145 TIGR02142 modC_ABC molybdenum 99.6 3.7E-17 8E-22 160.0 1.9 150 22-185 21-215 (354)
146 PRK11144 modC molybdate transp 99.6 3.3E-17 7.1E-22 160.2 1.4 150 22-185 22-212 (352)
147 PRK13650 cbiO cobalt transport 99.6 2.2E-17 4.9E-22 156.4 0.2 157 15-186 20-224 (279)
148 TIGR02211 LolD_lipo_ex lipopro 99.6 3.1E-17 6.8E-22 149.9 1.2 152 15-181 18-220 (221)
149 COG1101 PhnK ABC-type uncharac 99.6 8.2E-17 1.8E-21 142.4 3.7 157 13-183 17-230 (263)
150 PRK10762 D-ribose transporter 99.6 4.6E-17 9.9E-22 166.5 2.4 160 14-187 16-226 (501)
151 PRK13651 cobalt transporter AT 99.6 2.3E-17 5.1E-22 158.1 0.2 157 15-186 20-249 (305)
152 PRK13649 cbiO cobalt transport 99.6 3.1E-17 6.7E-22 155.5 1.0 157 15-185 20-228 (280)
153 PRK11629 lolD lipoprotein tran 99.6 3.9E-17 8.4E-22 150.7 1.5 156 15-185 22-228 (233)
154 PRK14250 phosphate ABC transpo 99.6 3E-17 6.4E-22 152.3 0.7 157 14-185 15-215 (241)
155 PRK13634 cbiO cobalt transport 99.6 2.5E-17 5.4E-22 156.9 0.1 157 15-185 20-229 (290)
156 PRK13638 cbiO cobalt transport 99.6 3.4E-17 7.4E-22 154.5 1.0 158 14-185 13-219 (271)
157 cd03300 ABC_PotA_N PotA is an 99.6 6.2E-17 1.3E-21 149.2 2.6 157 14-184 12-213 (232)
158 PRK15439 autoinducer 2 ABC tra 99.6 2.6E-17 5.6E-22 168.7 -0.0 160 14-187 23-225 (510)
159 PRK13646 cbiO cobalt transport 99.6 2.8E-17 6.1E-22 156.3 0.1 157 15-185 20-229 (286)
160 cd03297 ABC_ModC_molybdenum_tr 99.6 5.1E-17 1.1E-21 147.9 1.8 144 25-182 24-212 (214)
161 cd03235 ABC_Metallic_Cations A 99.6 6.7E-17 1.5E-21 147.0 2.5 150 15-178 12-208 (213)
162 PRK13635 cbiO cobalt transport 99.6 2.8E-17 6.1E-22 155.7 -0.0 156 15-185 20-223 (279)
163 PRK15079 oligopeptide ABC tran 99.6 3.9E-17 8.4E-22 158.2 0.7 157 15-185 34-245 (331)
164 COG4148 ModC ABC-type molybdat 99.6 6.2E-17 1.4E-21 148.1 1.8 149 25-187 25-214 (352)
165 TIGR00968 3a0106s01 sulfate AB 99.6 5.5E-17 1.2E-21 150.1 1.4 158 14-185 12-214 (237)
166 PRK13644 cbiO cobalt transport 99.6 3.4E-17 7.4E-22 154.7 0.1 156 15-185 15-218 (274)
167 TIGR01978 sufC FeS assembly AT 99.6 7.4E-17 1.6E-21 149.5 2.1 160 14-185 12-228 (243)
168 cd03232 ABC_PDR_domain2 The pl 99.6 5.1E-17 1.1E-21 145.6 0.9 153 15-182 20-190 (192)
169 PRK13639 cbiO cobalt transport 99.6 4.1E-17 9E-22 154.3 0.3 157 15-185 15-220 (275)
170 PRK10982 galactose/methyl gala 99.6 6.9E-17 1.5E-21 164.8 1.9 160 14-187 10-219 (491)
171 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.6 8.2E-17 1.8E-21 147.7 2.0 151 14-182 34-222 (224)
172 PRK13549 xylose transporter AT 99.6 9.9E-17 2.2E-21 164.2 2.6 160 14-187 17-228 (506)
173 PRK10584 putative ABC transpor 99.6 6.4E-17 1.4E-21 148.6 1.0 151 16-181 24-225 (228)
174 cd03234 ABCG_White The White s 99.6 9.7E-17 2.1E-21 147.3 2.1 156 14-183 19-225 (226)
175 PRK13631 cbiO cobalt transport 99.6 5.4E-17 1.2E-21 156.5 0.3 158 15-186 39-260 (320)
176 PRK14247 phosphate ABC transpo 99.6 1.3E-16 2.7E-21 148.8 2.5 157 14-185 15-228 (250)
177 TIGR00972 3a0107s01c2 phosphat 99.6 1.4E-16 3E-21 148.2 2.5 155 15-185 14-226 (247)
178 PRK09700 D-allose transporter 99.6 1.1E-16 2.5E-21 164.0 2.0 160 14-187 17-230 (510)
179 PRK13547 hmuV hemin importer A 99.6 1.6E-16 3.6E-21 149.9 2.7 158 14-185 13-238 (272)
180 TIGR03771 anch_rpt_ABC anchore 99.6 2.6E-16 5.7E-21 144.3 4.0 150 21-185 3-195 (223)
181 cd03217 ABC_FeS_Assembly ABC-t 99.6 7.9E-17 1.7E-21 145.3 0.2 156 14-184 12-187 (200)
182 PRK13632 cbiO cobalt transport 99.6 9.1E-17 2E-21 151.6 0.2 157 14-185 21-225 (271)
183 PRK11308 dppF dipeptide transp 99.6 1E-16 2.2E-21 155.0 0.5 157 15-185 28-238 (327)
184 cd03246 ABCC_Protease_Secretio 99.6 9.5E-17 2.1E-21 141.4 0.2 141 15-179 15-172 (173)
185 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.6 7E-17 1.5E-21 149.3 -0.7 155 15-185 16-220 (238)
186 TIGR02770 nickel_nikD nickel i 99.6 2.4E-16 5.2E-21 145.2 2.5 150 22-185 10-209 (230)
187 COG4598 HisP ABC-type histidin 99.6 3.6E-16 7.9E-21 134.7 3.4 161 13-187 17-237 (256)
188 PRK13633 cobalt transporter AT 99.6 1.2E-16 2.7E-21 151.4 0.5 157 14-185 22-227 (280)
189 cd03214 ABC_Iron-Siderophores_ 99.6 1.2E-16 2.6E-21 141.7 0.3 142 15-181 12-177 (180)
190 PRK13546 teichoic acids export 99.6 1.8E-16 3.9E-21 149.0 1.5 153 13-185 35-226 (264)
191 PRK09984 phosphonate/organopho 99.6 2.2E-16 4.7E-21 148.2 1.8 159 14-186 16-237 (262)
192 PRK13648 cbiO cobalt transport 99.6 1.2E-16 2.7E-21 150.5 0.0 157 15-186 22-226 (269)
193 PRK13645 cbiO cobalt transport 99.6 1.1E-16 2.4E-21 152.4 -0.3 156 16-185 25-234 (289)
194 cd03251 ABCC_MsbA MsbA is an e 99.6 2E-16 4.4E-21 145.8 1.4 154 16-185 16-219 (234)
195 PRK14242 phosphate transporter 99.6 2.4E-16 5.2E-21 147.1 1.7 161 14-185 18-231 (253)
196 PRK14267 phosphate ABC transpo 99.6 2.6E-16 5.6E-21 146.9 1.9 156 15-185 17-231 (253)
197 cd03299 ABC_ModC_like Archeal 99.6 2.8E-16 6.1E-21 145.2 1.9 155 17-185 14-213 (235)
198 PRK03695 vitamin B12-transport 99.6 3.5E-16 7.5E-21 145.8 2.5 156 17-185 11-216 (248)
199 PRK11022 dppD dipeptide transp 99.6 1.7E-16 3.7E-21 153.5 0.3 157 15-185 20-237 (326)
200 COG4674 Uncharacterized ABC-ty 99.6 1.5E-16 3.3E-21 138.7 -0.1 162 13-188 16-232 (249)
201 COG1084 Predicted GTPase [Gene 99.6 9.7E-15 2.1E-19 136.7 11.9 58 25-99 169-226 (346)
202 TIGR01187 potA spermidine/putr 99.6 1.6E-16 3.5E-21 153.7 -0.1 143 29-185 1-184 (325)
203 PRK11701 phnK phosphonate C-P 99.6 3.2E-16 6.9E-21 146.8 1.9 158 14-185 18-235 (258)
204 PRK14269 phosphate ABC transpo 99.6 3.5E-16 7.5E-21 145.5 1.9 159 14-185 14-224 (246)
205 PRK14273 phosphate ABC transpo 99.6 3.5E-16 7.6E-21 146.1 1.9 156 14-185 19-232 (254)
206 PRK13549 xylose transporter AT 99.6 4.5E-16 9.8E-21 159.4 2.7 159 15-187 275-490 (506)
207 PRK15056 manganese/iron transp 99.6 4.1E-16 8.8E-21 147.3 2.1 158 14-186 19-225 (272)
208 PRK13543 cytochrome c biogenes 99.6 8.7E-16 1.9E-20 139.9 4.1 145 14-171 23-207 (214)
209 PRK10261 glutathione transport 99.6 3E-16 6.4E-21 164.4 1.1 157 15-185 337-547 (623)
210 PRK10744 pstB phosphate transp 99.6 3.7E-16 8.1E-21 146.5 1.6 156 14-185 25-238 (260)
211 PRK10419 nikE nickel transport 99.6 3.8E-16 8.2E-21 147.2 1.6 158 14-185 24-235 (268)
212 PRK14248 phosphate ABC transpo 99.6 4E-16 8.8E-21 146.9 1.7 161 14-185 33-246 (268)
213 PRK11288 araG L-arabinose tran 99.6 4.6E-16 1E-20 159.1 2.1 157 14-184 16-222 (501)
214 cd03252 ABCC_Hemolysin The ABC 99.6 1.5E-16 3.3E-21 147.0 -1.3 155 15-185 15-219 (237)
215 PRK14268 phosphate ABC transpo 99.6 3E-16 6.5E-21 147.0 0.7 156 14-185 24-236 (258)
216 PRK09473 oppD oligopeptide tra 99.6 2.8E-16 6.2E-21 152.1 0.5 157 15-185 29-245 (330)
217 TIGR02982 heterocyst_DevA ABC 99.6 3.9E-16 8.4E-21 142.7 1.2 151 15-180 18-219 (220)
218 cd03253 ABCC_ATM1_transporter 99.6 2.2E-16 4.9E-21 145.7 -0.4 154 15-184 14-217 (236)
219 cd03216 ABC_Carb_Monos_I This 99.6 3.2E-16 6.9E-21 136.8 0.6 140 15-181 13-161 (163)
220 TIGR02633 xylG D-xylose ABC tr 99.6 5.6E-16 1.2E-20 158.5 2.4 159 14-186 13-225 (500)
221 cd03247 ABCC_cytochrome_bd The 99.6 2.4E-16 5.2E-21 139.4 -0.3 146 16-182 16-176 (178)
222 TIGR03608 L_ocin_972_ABC putat 99.6 6E-16 1.3E-20 139.8 2.3 144 14-171 10-203 (206)
223 TIGR01257 rim_protein retinal- 99.6 2.7E-16 5.8E-21 178.8 -0.1 158 15-186 1952-2154(2272)
224 PRK14270 phosphate ABC transpo 99.6 5.9E-16 1.3E-20 144.4 2.0 156 14-185 16-229 (251)
225 PRK14262 phosphate ABC transpo 99.6 5.5E-16 1.2E-20 144.4 1.6 156 14-185 15-228 (250)
226 PRK13640 cbiO cobalt transport 99.6 3.6E-16 7.8E-21 148.4 0.2 157 15-186 20-227 (282)
227 PRK14256 phosphate ABC transpo 99.6 5.7E-16 1.2E-20 144.6 1.5 157 14-185 16-230 (252)
228 PRK14238 phosphate transporter 99.6 4.4E-16 9.5E-21 147.0 0.7 156 14-185 36-249 (271)
229 PRK14272 phosphate ABC transpo 99.6 5.6E-16 1.2E-20 144.5 1.3 157 14-185 16-230 (252)
230 PRK14251 phosphate ABC transpo 99.6 7.8E-16 1.7E-20 143.5 2.2 156 14-185 16-229 (251)
231 PLN03211 ABC transporter G-25; 99.6 1.3E-15 2.8E-20 159.9 4.0 169 14-197 80-301 (659)
232 PRK15134 microcin C ABC transp 99.6 7E-16 1.5E-20 158.8 1.9 156 15-185 299-509 (529)
233 PRK13642 cbiO cobalt transport 99.6 5E-16 1.1E-20 147.0 0.7 157 15-186 20-224 (277)
234 PRK14237 phosphate transporter 99.6 7.2E-16 1.6E-20 145.2 1.7 157 14-186 32-246 (267)
235 PRK14259 phosphate ABC transpo 99.6 8.2E-16 1.8E-20 145.0 2.0 148 14-177 25-228 (269)
236 TIGR02323 CP_lyasePhnK phospho 99.6 7.7E-16 1.7E-20 143.7 1.8 157 15-185 16-232 (253)
237 PRK10938 putative molybdenum t 99.6 3.8E-16 8.2E-21 159.4 -0.4 158 14-185 15-218 (490)
238 PRK10261 glutathione transport 99.6 7.4E-16 1.6E-20 161.4 1.7 157 15-185 29-252 (623)
239 cd03228 ABCC_MRP_Like The MRP 99.6 3.5E-16 7.7E-21 137.5 -0.6 139 16-178 16-170 (171)
240 PRK15177 Vi polysaccharide exp 99.6 5.9E-16 1.3E-20 141.0 0.8 152 17-187 2-188 (213)
241 TIGR02633 xylG D-xylose ABC tr 99.6 1.4E-15 3E-20 155.6 3.4 156 15-184 273-485 (500)
242 PRK14241 phosphate transporter 99.6 9.5E-16 2E-20 143.6 2.0 157 14-185 16-236 (258)
243 cd03245 ABCC_bacteriocin_expor 99.6 6.1E-16 1.3E-20 141.3 0.6 151 15-182 17-218 (220)
244 PRK14239 phosphate transporter 99.6 8.1E-16 1.8E-20 143.4 1.4 158 14-185 17-230 (252)
245 PRK10247 putative ABC transpor 99.6 8.9E-16 1.9E-20 140.9 1.6 146 14-175 19-210 (225)
246 cd03231 ABC_CcmA_heme_exporter 99.6 1.4E-15 3E-20 137.2 2.8 145 14-171 12-195 (201)
247 PRK11288 araG L-arabinose tran 99.6 1.2E-15 2.5E-20 156.1 2.6 159 16-188 267-482 (501)
248 PRK10418 nikD nickel transport 99.6 8E-16 1.7E-20 143.8 1.2 157 15-185 16-224 (254)
249 cd03222 ABC_RNaseL_inhibitor T 99.5 1.1E-15 2.4E-20 134.9 1.7 127 15-178 13-148 (177)
250 PRK14274 phosphate ABC transpo 99.5 1.1E-15 2.4E-20 143.2 1.7 156 14-185 24-237 (259)
251 PRK14235 phosphate transporter 99.5 1E-15 2.2E-20 144.1 1.4 156 14-185 31-245 (267)
252 TIGR01166 cbiO cobalt transpor 99.5 2.5E-15 5.5E-20 134.2 3.8 132 14-158 4-179 (190)
253 PRK14257 phosphate ABC transpo 99.5 1E-15 2.2E-20 148.1 1.3 162 15-186 95-308 (329)
254 PRK15093 antimicrobial peptide 99.5 7.6E-16 1.7E-20 149.3 0.4 162 14-185 19-242 (330)
255 PRK14245 phosphate ABC transpo 99.5 1.1E-15 2.4E-20 142.4 1.4 159 14-185 15-228 (250)
256 PRK14240 phosphate transporter 99.5 9.4E-16 2E-20 142.9 0.9 161 14-185 15-228 (250)
257 COG2274 SunT ABC-type bacterio 99.5 1.6E-15 3.6E-20 158.9 2.8 156 15-186 486-691 (709)
258 PRK14249 phosphate ABC transpo 99.5 1.1E-15 2.3E-20 142.7 1.2 155 15-185 17-229 (251)
259 PRK15134 microcin C ABC transp 99.5 1.6E-15 3.6E-20 156.1 2.7 157 15-185 22-240 (529)
260 cd03254 ABCC_Glucan_exporter_l 99.5 1.1E-15 2.4E-20 140.4 1.2 153 15-184 16-219 (229)
261 cd03244 ABCC_MRP_domain2 Domai 99.5 8.7E-16 1.9E-20 140.4 0.1 154 15-184 17-219 (221)
262 cd03237 ABC_RNaseL_inhibitor_d 99.5 2E-15 4.4E-20 140.4 2.5 137 22-177 23-191 (246)
263 PRK14275 phosphate ABC transpo 99.5 1.3E-15 2.8E-20 144.9 1.1 155 15-185 52-264 (286)
264 PRK13545 tagH teichoic acids e 99.5 9.8E-16 2.1E-20 154.2 0.3 153 15-186 37-227 (549)
265 PRK09544 znuC high-affinity zi 99.5 8.3E-16 1.8E-20 143.5 -0.2 153 14-185 16-203 (251)
266 cd01898 Obg Obg subfamily. Th 99.5 7.3E-14 1.6E-18 121.5 11.9 59 26-100 2-60 (170)
267 PRK10762 D-ribose transporter 99.5 2.5E-15 5.5E-20 153.7 3.1 157 17-187 267-480 (501)
268 PRK14253 phosphate ABC transpo 99.5 1.3E-15 2.8E-20 141.8 0.9 156 14-185 15-227 (249)
269 COG0486 ThdF Predicted GTPase 99.5 4.5E-15 9.8E-20 145.2 4.7 157 20-256 213-370 (454)
270 cd03248 ABCC_TAP TAP, the Tran 99.5 1.6E-15 3.5E-20 139.1 1.5 149 15-179 27-225 (226)
271 PRK15439 autoinducer 2 ABC tra 99.5 2.5E-15 5.4E-20 154.0 2.9 156 17-186 278-487 (510)
272 PRK09700 D-allose transporter 99.5 3E-15 6.4E-20 153.5 3.5 155 16-184 277-491 (510)
273 COG1123 ATPase components of v 99.5 2.8E-15 6.2E-20 150.4 3.2 158 14-185 303-513 (539)
274 PRK09580 sufC cysteine desulfu 99.5 2E-15 4.3E-20 140.4 1.9 160 14-187 13-231 (248)
275 COG4138 BtuD ABC-type cobalami 99.5 1.5E-14 3.3E-19 124.2 7.1 155 19-186 20-216 (248)
276 PRK13538 cytochrome c biogenes 99.5 5E-15 1.1E-19 133.9 4.4 140 14-166 13-194 (204)
277 CHL00131 ycf16 sulfate ABC tra 99.5 2.5E-15 5.5E-20 140.1 2.4 161 14-186 19-236 (252)
278 COG2262 HflX GTPases [General 99.5 3.7E-14 8E-19 136.6 10.4 83 25-123 193-284 (411)
279 TIGR03269 met_CoM_red_A2 methy 99.5 2.2E-15 4.9E-20 154.8 2.2 159 14-186 12-253 (520)
280 PRK14263 phosphate ABC transpo 99.5 1.7E-15 3.6E-20 142.2 1.2 157 14-185 20-239 (261)
281 COG4161 ArtP ABC-type arginine 99.5 9.1E-15 2E-19 124.0 5.4 160 14-187 14-226 (242)
282 PRK14261 phosphate ABC transpo 99.5 1.7E-15 3.6E-20 141.5 1.1 161 14-185 18-231 (253)
283 PRK14236 phosphate transporter 99.5 1.8E-15 3.9E-20 142.8 1.3 156 14-185 37-250 (272)
284 COG4608 AppF ABC-type oligopep 99.5 2.3E-15 5E-20 138.5 1.9 154 15-186 26-194 (268)
285 PRK14271 phosphate ABC transpo 99.5 2.2E-15 4.8E-20 142.6 1.8 156 14-185 33-245 (276)
286 PRK14254 phosphate ABC transpo 99.5 2E-15 4.4E-20 143.4 1.4 156 15-185 52-263 (285)
287 TIGR03269 met_CoM_red_A2 methy 99.5 1.7E-15 3.6E-20 155.7 0.6 157 15-185 297-511 (520)
288 COG1160 Predicted GTPases [Gen 99.5 3.2E-14 7E-19 138.9 9.5 192 23-282 177-373 (444)
289 PRK14244 phosphate ABC transpo 99.5 2.9E-15 6.3E-20 139.7 1.9 156 14-185 17-231 (251)
290 TIGR01257 rim_protein retinal- 99.5 2.2E-15 4.7E-20 171.5 1.2 157 14-185 942-1143(2272)
291 COG4619 ABC-type uncharacteriz 99.5 6.4E-15 1.4E-19 125.7 3.7 153 13-179 14-211 (223)
292 COG4988 CydD ABC-type transpor 99.5 2.9E-15 6.3E-20 149.9 1.8 159 14-187 333-539 (559)
293 PRK14246 phosphate ABC transpo 99.5 3.9E-15 8.4E-20 139.5 2.5 158 13-185 21-235 (257)
294 PRK14243 phosphate transporter 99.5 2.3E-15 5E-20 141.5 1.0 161 14-185 22-242 (264)
295 TIGR02324 CP_lyasePhnL phospho 99.5 9.8E-15 2.1E-19 133.7 5.0 144 15-171 21-219 (224)
296 TIGR00955 3a01204 The Eye Pigm 99.5 8.2E-15 1.8E-19 153.4 5.0 162 13-188 36-253 (617)
297 cd03369 ABCC_NFT1 Domain 2 of 99.5 1.6E-15 3.5E-20 137.3 -0.4 153 15-184 21-205 (207)
298 PRK14258 phosphate ABC transpo 99.5 4.1E-15 8.8E-20 139.6 2.1 156 15-185 20-239 (261)
299 PRK10982 galactose/methyl gala 99.5 5.9E-15 1.3E-19 150.6 3.3 155 16-184 262-473 (491)
300 PRK14252 phosphate ABC transpo 99.5 3.6E-15 7.7E-20 140.3 1.2 161 14-185 28-243 (265)
301 PRK14255 phosphate ABC transpo 99.5 3.6E-15 7.8E-20 139.1 1.2 155 14-184 17-229 (252)
302 PRK14265 phosphate ABC transpo 99.5 3.3E-15 7.2E-20 141.2 0.9 157 14-186 32-253 (274)
303 PRK13539 cytochrome c biogenes 99.5 8.4E-15 1.8E-19 132.7 3.4 139 15-166 15-192 (207)
304 TIGR01189 ccmA heme ABC export 99.5 1.1E-14 2.3E-19 131.1 3.9 132 14-158 12-179 (198)
305 COG4181 Predicted ABC-type tra 99.5 2.5E-14 5.5E-19 122.5 5.9 155 12-181 20-225 (228)
306 PRK13540 cytochrome c biogenes 99.5 1.3E-14 2.9E-19 130.7 4.5 137 14-163 13-189 (200)
307 TIGR03796 NHPM_micro_ABC1 NHPM 99.5 3.4E-15 7.4E-20 158.9 0.7 154 15-186 492-695 (710)
308 cd01881 Obg_like The Obg-like 99.5 1.5E-13 3.2E-18 120.0 10.9 55 29-100 1-56 (176)
309 COG1119 ModF ABC-type molybden 99.5 2.7E-15 5.8E-20 135.6 -0.1 158 13-184 42-255 (257)
310 PRK11174 cysteine/glutathione 99.5 3.3E-15 7.1E-20 155.7 0.2 155 14-185 362-566 (588)
311 cd03223 ABCD_peroxisomal_ALDP 99.5 2.7E-15 5.9E-20 131.3 -0.4 139 15-178 14-163 (166)
312 COG0444 DppD ABC-type dipeptid 99.5 2.8E-15 6E-20 140.9 -0.4 160 14-187 17-239 (316)
313 TIGR03797 NHPM_micro_ABC2 NHPM 99.5 3E-15 6.6E-20 158.7 -0.2 155 14-186 465-668 (686)
314 PRK11176 lipid transporter ATP 99.5 5.6E-15 1.2E-19 153.8 1.5 156 15-186 356-562 (582)
315 PRK14266 phosphate ABC transpo 99.5 5.1E-15 1.1E-19 138.0 0.9 161 14-185 15-228 (250)
316 PRK14260 phosphate ABC transpo 99.5 6.8E-15 1.5E-19 137.9 1.7 156 14-185 19-237 (259)
317 TIGR00436 era GTP-binding prot 99.5 9.6E-14 2.1E-18 131.0 9.5 58 26-100 2-60 (270)
318 TIGR03375 type_I_sec_LssB type 99.5 5.7E-15 1.2E-19 156.8 0.8 155 15-185 478-682 (694)
319 COG1132 MdlB ABC-type multidru 99.5 4.5E-15 9.8E-20 154.1 -0.1 157 14-186 341-547 (567)
320 cd03250 ABCC_MRP_domain1 Domai 99.5 3.5E-15 7.7E-20 134.8 -0.8 143 15-178 18-203 (204)
321 PRK14264 phosphate ABC transpo 99.5 7E-15 1.5E-19 141.1 1.1 156 15-185 58-283 (305)
322 cd03289 ABCC_CFTR2 The CFTR su 99.5 6.3E-15 1.4E-19 139.2 0.6 156 14-186 16-220 (275)
323 TIGR01842 type_I_sec_PrtD type 99.5 7.2E-15 1.6E-19 151.8 1.1 156 15-185 331-536 (544)
324 PRK10790 putative multidrug tr 99.5 5.6E-15 1.2E-19 154.1 0.2 156 15-186 354-558 (592)
325 PRK13541 cytochrome c biogenes 99.5 2.6E-14 5.7E-19 128.2 4.2 129 23-164 25-186 (195)
326 COG4987 CydC ABC-type transpor 99.5 7.9E-15 1.7E-19 145.0 0.7 157 14-186 350-556 (573)
327 cd03288 ABCC_SUR2 The SUR doma 99.5 6.1E-15 1.3E-19 138.1 -0.1 154 15-185 34-237 (257)
328 TIGR01846 type_I_sec_HlyB type 99.5 5.9E-15 1.3E-19 156.7 -0.3 155 15-185 470-674 (694)
329 TIGR01193 bacteriocin_ABC ABC- 99.5 7.3E-15 1.6E-19 156.3 0.2 155 14-185 486-691 (708)
330 PRK11160 cysteine/glutathione 99.5 8.3E-15 1.8E-19 152.2 0.4 155 15-185 353-556 (574)
331 COG0370 FeoB Fe2+ transport sy 99.5 1.1E-13 2.4E-18 140.8 8.5 58 25-99 4-61 (653)
332 KOG0055 Multidrug/pheromone ex 99.5 1E-14 2.2E-19 156.7 1.0 158 14-187 365-572 (1228)
333 TIGR03156 GTP_HflX GTP-binding 99.5 1.1E-13 2.4E-18 135.0 7.7 62 23-100 188-249 (351)
334 PRK13409 putative ATPase RIL; 99.4 1.7E-14 3.7E-19 149.7 1.6 146 22-188 363-539 (590)
335 cd03290 ABCC_SUR1_N The SUR do 99.4 1.5E-14 3.3E-19 132.0 1.0 148 15-178 14-217 (218)
336 COG1123 ATPase components of v 99.4 2.6E-14 5.7E-19 143.4 2.6 158 15-186 22-239 (539)
337 PRK15064 ABC transporter ATP-b 99.4 1.1E-14 2.4E-19 150.0 -0.1 149 15-184 332-518 (530)
338 TIGR00958 3a01208 Conjugate Tr 99.4 1E-14 2.2E-19 155.0 -0.4 153 15-185 494-696 (711)
339 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.4 2E-14 4.3E-19 122.9 1.3 122 16-179 14-144 (144)
340 PRK10789 putative multidrug tr 99.4 1.2E-14 2.7E-19 150.9 0.0 155 15-185 328-532 (569)
341 PRK13657 cyclic beta-1,2-gluca 99.4 1.2E-14 2.7E-19 151.5 -0.1 155 15-185 348-552 (588)
342 PRK15064 ABC transporter ATP-b 99.4 1.8E-14 3.8E-19 148.5 1.0 152 14-186 13-237 (530)
343 cd03291 ABCC_CFTR1 The CFTR su 99.4 9.6E-15 2.1E-19 138.4 -0.9 148 15-185 50-241 (282)
344 TIGR01192 chvA glucan exporter 99.4 1.2E-14 2.6E-19 151.4 -0.4 155 15-185 348-552 (585)
345 TIGR00956 3a01205 Pleiotropic 99.4 4.6E-14 9.9E-19 159.0 4.1 161 14-188 775-990 (1394)
346 TIGR02203 MsbA_lipidA lipid A 99.4 3E-14 6.4E-19 148.0 1.8 155 15-185 345-550 (571)
347 TIGR02204 MsbA_rel ABC transpo 99.4 2.9E-14 6.2E-19 148.3 1.5 155 15-185 353-557 (576)
348 KOG0057 Mitochondrial Fe/S clu 99.4 1.6E-14 3.4E-19 143.1 -0.7 156 14-186 364-569 (591)
349 PRK11819 putative ABC transpor 99.4 3.2E-14 7E-19 147.3 1.4 153 14-187 19-246 (556)
350 PRK10535 macrolide transporter 99.4 3.4E-14 7.5E-19 149.4 1.5 158 15-187 21-228 (648)
351 cd03236 ABC_RNaseL_inhibitor_d 99.4 3.1E-14 6.6E-19 133.1 0.7 151 16-182 15-218 (255)
352 TIGR03719 ABC_ABC_ChvD ATP-bin 99.4 3.7E-14 8.1E-19 146.7 1.3 153 14-187 17-244 (552)
353 PRK10636 putative ABC transpor 99.4 1.6E-14 3.5E-19 151.5 -1.7 152 14-187 324-513 (638)
354 PRK10938 putative molybdenum t 99.4 6.2E-14 1.4E-18 143.1 2.6 155 15-183 273-484 (490)
355 COG4172 ABC-type uncharacteriz 99.4 1E-13 2.3E-18 132.8 3.8 159 14-187 299-512 (534)
356 TIGR00956 3a01205 Pleiotropic 99.4 9.3E-14 2E-18 156.6 4.0 165 13-187 72-296 (1394)
357 KOG0059 Lipid exporter ABCA1 a 99.4 1E-13 2.2E-18 150.2 3.5 157 17-187 580-783 (885)
358 PRK11147 ABC transporter ATPas 99.4 4.5E-14 9.7E-19 148.3 0.8 153 14-187 331-524 (635)
359 PRK11058 GTPase HflX; Provisio 99.4 7E-13 1.5E-17 132.4 9.0 60 25-100 198-257 (426)
360 KOG0061 Transporter, ABC super 99.4 4.6E-13 1E-17 139.5 8.0 163 13-187 41-256 (613)
361 TIGR03719 ABC_ABC_ChvD ATP-bin 99.4 5.9E-14 1.3E-18 145.3 1.2 147 15-181 335-520 (552)
362 COG0396 sufC Cysteine desulfur 99.4 9.6E-14 2.1E-18 124.3 2.4 160 15-186 17-229 (251)
363 PRK11819 putative ABC transpor 99.4 5.6E-14 1.2E-18 145.5 0.7 148 14-181 336-522 (556)
364 PRK03003 GTP-binding protein D 99.4 1.2E-12 2.7E-17 132.8 10.4 60 24-100 211-271 (472)
365 cd00267 ABC_ATPase ABC (ATP-bi 99.4 1.1E-13 2.4E-18 119.8 2.1 128 16-178 13-156 (157)
366 PLN03232 ABC transporter C fam 99.4 5.3E-14 1.1E-18 159.8 0.0 156 15-186 1249-1453(1495)
367 COG4167 SapF ABC-type antimicr 99.4 2.6E-13 5.6E-18 117.5 3.8 157 16-186 27-234 (267)
368 PLN03140 ABC transporter G fam 99.4 2.6E-13 5.6E-18 152.9 4.1 159 14-186 177-422 (1470)
369 PRK00089 era GTPase Era; Revie 99.4 8.3E-13 1.8E-17 125.9 6.9 58 25-99 6-64 (292)
370 PLN03130 ABC transporter C fam 99.4 6.9E-14 1.5E-18 159.3 -0.6 156 15-186 1252-1456(1622)
371 PRK10636 putative ABC transpor 99.4 1.2E-13 2.6E-18 145.0 1.1 153 13-182 12-226 (638)
372 PLN03140 ABC transporter G fam 99.4 1.6E-13 3.4E-18 154.6 2.1 163 14-188 892-1107(1470)
373 PRK13409 putative ATPase RIL; 99.4 6.6E-14 1.4E-18 145.3 -1.3 147 16-177 88-286 (590)
374 cd01897 NOG NOG1 is a nucleola 99.3 8.1E-12 1.8E-16 108.4 11.6 57 26-99 2-58 (168)
375 KOG0058 Peptide exporter, ABC 99.3 2.5E-13 5.5E-18 138.8 2.3 157 13-185 479-685 (716)
376 PRK09554 feoB ferrous iron tra 99.3 1.7E-12 3.8E-17 137.9 8.6 58 25-99 4-61 (772)
377 COG0488 Uup ATPase components 99.3 9.8E-12 2.1E-16 126.7 13.5 184 13-243 14-207 (530)
378 cd01878 HflX HflX subfamily. 99.3 6.2E-12 1.3E-16 113.3 10.5 62 22-99 39-100 (204)
379 TIGR02868 CydC thiol reductant 99.3 3.5E-13 7.6E-18 138.8 2.4 124 15-152 348-516 (529)
380 PRK15494 era GTPase Era; Provi 99.3 1E-11 2.2E-16 120.9 12.1 199 26-302 54-267 (339)
381 TIGR02857 CydD thiol reductant 99.3 4.7E-13 1E-17 137.8 2.8 142 15-171 335-526 (529)
382 cd03238 ABC_UvrA The excision 99.3 2.3E-13 5E-18 120.1 0.1 134 14-180 7-166 (176)
383 TIGR00957 MRP_assoc_pro multi 99.3 2.6E-13 5.7E-18 154.4 0.2 156 15-186 1299-1503(1522)
384 COG0218 Predicted GTPase [Gene 99.3 1.8E-11 3.9E-16 108.1 11.0 55 25-99 25-81 (200)
385 COG4133 CcmA ABC-type transpor 99.3 4.2E-12 9E-17 110.6 6.6 128 13-153 13-177 (209)
386 PRK09518 bifunctional cytidyla 99.3 8.2E-12 1.8E-16 132.7 10.2 59 25-100 451-510 (712)
387 PLN03073 ABC transporter F fam 99.3 3.7E-13 8.1E-18 142.4 0.0 145 15-181 522-703 (718)
388 PRK11147 ABC transporter ATPas 99.3 5.7E-13 1.2E-17 140.0 1.4 157 14-186 15-238 (635)
389 TIGR03594 GTPase_EngA ribosome 99.3 7.6E-12 1.6E-16 125.6 9.1 59 25-100 173-232 (429)
390 PTZ00265 multidrug resistance 99.3 4.1E-13 9E-18 151.7 -0.0 167 15-185 1181-1446(1466)
391 PTZ00243 ABC transporter; Prov 99.3 2.9E-13 6.3E-18 154.0 -1.3 156 15-186 1323-1528(1560)
392 COG4618 ArpD ABC-type protease 99.3 7.2E-13 1.6E-17 130.3 1.4 158 14-186 348-555 (580)
393 cd01895 EngA2 EngA2 subfamily. 99.3 8E-12 1.7E-16 108.1 7.7 59 25-100 3-62 (174)
394 PRK00093 GTP-binding protein D 99.3 8.6E-12 1.9E-16 125.4 8.4 60 24-100 173-233 (435)
395 PRK10522 multidrug transporter 99.3 4.8E-13 1E-17 138.4 -0.8 151 15-183 336-530 (547)
396 PTZ00265 multidrug resistance 99.3 1.6E-12 3.5E-17 147.0 2.7 150 15-179 398-656 (1466)
397 TIGR01194 cyc_pep_trnsptr cycl 99.3 6.1E-13 1.3E-17 137.8 -0.8 153 16-183 356-551 (555)
398 cd01879 FeoB Ferrous iron tran 99.3 1.1E-11 2.4E-16 106.1 7.1 54 29-99 1-54 (158)
399 TIGR00450 mnmE_trmE_thdF tRNA 99.2 1.6E-11 3.4E-16 123.4 8.6 64 19-99 198-262 (442)
400 cd01868 Rab11_like Rab11-like. 99.2 2.7E-11 5.9E-16 104.9 8.8 47 25-71 4-50 (165)
401 PRK05291 trmE tRNA modificatio 99.2 1.2E-11 2.6E-16 124.7 7.2 62 21-99 212-274 (449)
402 KOG1191 Mitochondrial GTPase [ 99.2 2E-11 4.3E-16 119.7 8.1 65 19-100 263-328 (531)
403 TIGR01271 CFTR_protein cystic 99.2 1.4E-12 3E-17 148.2 -0.3 156 14-186 1231-1435(1490)
404 TIGR03594 GTPase_EngA ribosome 99.2 1E-11 2.2E-16 124.6 5.8 57 26-99 1-58 (429)
405 TIGR03598 GTPase_YsxC ribosome 99.2 4.2E-11 9.1E-16 105.8 8.6 57 24-100 18-76 (179)
406 cd04164 trmE TrmE (MnmE, ThdF, 99.2 2.1E-11 4.6E-16 103.9 6.1 59 24-99 1-60 (157)
407 cd01861 Rab6 Rab6 subfamily. 99.2 1.1E-10 2.4E-15 100.4 10.4 46 26-71 2-47 (161)
408 cd04171 SelB SelB subfamily. 99.2 1.9E-11 4.1E-16 105.2 5.6 57 25-98 1-61 (164)
409 KOG0056 Heavy metal exporter H 99.2 1.3E-12 2.9E-17 127.6 -2.6 158 13-185 549-755 (790)
410 TIGR01271 CFTR_protein cystic 99.2 3.3E-12 7.1E-17 145.2 -0.3 150 15-186 439-631 (1490)
411 TIGR00437 feoB ferrous iron tr 99.2 2.6E-11 5.7E-16 125.9 6.3 52 31-99 1-52 (591)
412 TIGR00957 MRP_assoc_pro multi 99.2 4.1E-12 8.9E-17 144.8 -0.1 151 15-186 651-845 (1522)
413 PRK03003 GTP-binding protein D 99.2 3.7E-11 8.1E-16 122.1 6.7 58 25-99 39-97 (472)
414 COG0488 Uup ATPase components 99.2 5.1E-12 1.1E-16 128.7 -0.2 144 15-177 335-511 (530)
415 KOG0055 Multidrug/pheromone ex 99.1 1.5E-11 3.3E-16 132.6 3.2 157 13-185 1001-1207(1228)
416 KOG1490 GTP-binding protein CR 99.1 1.2E-10 2.5E-15 114.4 8.3 58 25-99 169-226 (620)
417 KOG0065 Pleiotropic drug resis 99.1 1.1E-10 2.3E-15 126.4 8.4 175 13-198 802-1028(1391)
418 PRK04213 GTP-binding protein; 99.1 4.3E-10 9.4E-15 100.9 11.0 54 24-98 9-62 (201)
419 cd04160 Arfrp1 Arfrp1 subfamil 99.1 7.7E-11 1.7E-15 102.2 5.4 56 26-98 1-60 (167)
420 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.1 3.9E-10 8.5E-15 97.7 9.7 49 202-253 107-155 (166)
421 cd01866 Rab2 Rab2 subfamily. 99.1 4.4E-10 9.6E-15 97.9 9.8 46 25-70 5-50 (168)
422 PTZ00243 ABC transporter; Prov 99.1 1.4E-11 3.1E-16 140.3 0.4 152 14-186 672-865 (1560)
423 smart00175 RAB Rab subfamily o 99.1 4.6E-10 1E-14 96.6 9.6 45 26-70 2-46 (164)
424 cd04142 RRP22 RRP22 subfamily. 99.1 8E-10 1.7E-14 99.5 11.4 50 202-253 116-165 (198)
425 COG4107 PhnK ABC-type phosphon 99.1 7.2E-11 1.6E-15 101.7 4.1 62 120-184 167-234 (258)
426 cd01867 Rab8_Rab10_Rab13_like 99.1 6.5E-10 1.4E-14 96.7 9.8 49 202-253 108-156 (167)
427 PRK09518 bifunctional cytidyla 99.1 9.9E-11 2.1E-15 124.5 5.4 58 25-99 276-334 (712)
428 KOG0054 Multidrug resistance-a 99.1 2.5E-11 5.4E-16 133.5 0.8 152 13-186 1151-1357(1381)
429 cd04163 Era Era subfamily. Er 99.1 1.8E-10 3.9E-15 98.6 5.9 58 25-99 4-62 (168)
430 cd04145 M_R_Ras_like M-Ras/R-R 99.1 6.3E-10 1.4E-14 95.9 9.1 45 25-70 3-47 (164)
431 PRK00093 GTP-binding protein D 99.1 5.8E-10 1.3E-14 112.2 10.2 58 25-99 2-60 (435)
432 cd01862 Rab7 Rab7 subfamily. 99.1 7E-10 1.5E-14 96.4 9.4 50 202-253 109-158 (172)
433 cd04119 RJL RJL (RabJ-Like) su 99.1 7.3E-10 1.6E-14 95.6 9.4 49 202-253 110-158 (168)
434 PLN03108 Rab family protein; P 99.1 9.3E-10 2E-14 99.9 10.5 48 25-72 7-54 (210)
435 cd04112 Rab26 Rab26 subfamily. 99.1 1.1E-09 2.4E-14 97.7 10.8 58 26-98 2-60 (191)
436 TIGR00954 3a01203 Peroxysomal 99.1 2.8E-11 6E-16 127.7 0.4 140 14-175 464-651 (659)
437 cd04136 Rap_like Rap-like subf 99.1 8.3E-10 1.8E-14 95.0 9.6 45 25-70 2-46 (163)
438 PLN03073 ABC transporter F fam 99.1 2E-11 4.4E-16 129.3 -0.7 61 120-186 360-426 (718)
439 cd01865 Rab3 Rab3 subfamily. 99.1 1E-09 2.2E-14 95.3 10.1 49 202-253 106-154 (165)
440 PF02824 TGS: TGS domain; Int 99.1 2.2E-10 4.7E-15 82.8 4.9 59 285-365 1-59 (60)
441 PRK00454 engB GTP-binding prot 99.1 3.1E-10 6.7E-15 101.1 6.9 55 25-99 25-81 (196)
442 cd01863 Rab18 Rab18 subfamily. 99.1 1E-09 2.3E-14 94.4 10.0 49 201-253 105-153 (161)
443 COG5265 ATM1 ABC-type transpor 99.0 7.7E-11 1.7E-15 113.9 2.9 156 14-185 275-480 (497)
444 cd01894 EngA1 EngA1 subfamily. 99.0 1.9E-09 4.2E-14 91.8 11.1 55 28-99 1-56 (157)
445 smart00173 RAS Ras subfamily o 99.0 9.1E-10 2E-14 95.1 9.1 49 202-253 105-153 (164)
446 COG4172 ABC-type uncharacteriz 99.0 1.4E-10 3.1E-15 111.5 4.3 164 13-185 21-241 (534)
447 cd04138 H_N_K_Ras_like H-Ras/N 99.0 9.8E-10 2.1E-14 94.2 9.1 49 201-253 105-153 (162)
448 cd04104 p47_IIGP_like p47 (47- 99.0 1.2E-09 2.6E-14 98.2 9.9 24 25-48 2-25 (197)
449 PLN03130 ABC transporter C fam 99.0 3.8E-11 8.3E-16 137.2 0.1 151 15-187 630-824 (1622)
450 cd00879 Sar1 Sar1 subfamily. 99.0 1.4E-09 2.9E-14 96.7 9.2 46 24-72 19-64 (190)
451 PF01926 MMR_HSR1: 50S ribosom 99.0 2.5E-10 5.3E-15 93.5 3.8 58 26-100 1-59 (116)
452 cd04107 Rab32_Rab38 Rab38/Rab3 99.0 2.6E-09 5.6E-14 96.1 10.8 51 201-253 109-159 (201)
453 cd00876 Ras Ras family. The R 99.0 9.7E-10 2.1E-14 94.0 7.6 44 26-70 1-44 (160)
454 PLN03232 ABC transporter C fam 99.0 6.6E-11 1.4E-15 134.8 0.3 151 15-186 630-823 (1495)
455 cd04139 RalA_RalB RalA/RalB su 99.0 2.5E-09 5.5E-14 91.9 10.0 44 26-70 2-45 (164)
456 cd01876 YihA_EngB The YihA (En 99.0 2.4E-09 5.3E-14 91.9 9.8 35 27-61 2-38 (170)
457 cd04159 Arl10_like Arl10-like 99.0 4.5E-10 9.8E-15 95.5 5.0 23 27-49 2-24 (159)
458 TIGR00231 small_GTP small GTP- 99.0 1.6E-09 3.5E-14 91.4 8.3 46 25-70 2-47 (161)
459 cd04109 Rab28 Rab28 subfamily. 99.0 2.3E-09 5.1E-14 97.5 9.8 49 202-253 109-157 (215)
460 cd04155 Arl3 Arl3 subfamily. 99.0 4.2E-10 9.1E-15 98.2 4.6 24 24-47 14-37 (173)
461 COG4136 ABC-type uncharacteriz 99.0 5.2E-10 1.1E-14 94.2 4.8 122 21-155 25-183 (213)
462 cd04175 Rap1 Rap1 subgroup. T 99.0 2.9E-09 6.2E-14 92.1 9.6 45 25-70 2-46 (164)
463 cd04114 Rab30 Rab30 subfamily. 99.0 2.6E-09 5.6E-14 92.7 9.3 48 24-71 7-54 (169)
464 cd00881 GTP_translation_factor 99.0 1.5E-09 3.3E-14 95.5 7.7 24 26-49 1-24 (189)
465 smart00178 SAR Sar1p-like memb 99.0 1.8E-09 4E-14 95.8 7.7 46 22-70 15-60 (184)
466 cd04122 Rab14 Rab14 subfamily. 98.9 4.6E-09 1E-13 91.1 9.9 49 202-253 107-155 (166)
467 cd04176 Rap2 Rap2 subgroup. T 98.9 9E-09 1.9E-13 88.8 11.6 23 25-47 2-24 (163)
468 cd04127 Rab27A Rab27a subfamil 98.9 5E-09 1.1E-13 92.0 10.1 49 202-253 120-168 (180)
469 cd04113 Rab4 Rab4 subfamily. 98.9 3.3E-09 7.2E-14 91.3 8.8 49 202-253 105-153 (161)
470 cd01864 Rab19 Rab19 subfamily. 98.9 7.4E-09 1.6E-13 89.7 11.0 50 202-253 108-157 (165)
471 cd04123 Rab21 Rab21 subfamily. 98.9 5.6E-09 1.2E-13 89.4 9.9 49 202-253 105-153 (162)
472 cd04146 RERG_RasL11_like RERG/ 98.9 5.2E-09 1.1E-13 90.7 9.7 58 26-99 1-58 (165)
473 cd04177 RSR1 RSR1 subgroup. R 98.9 7.1E-09 1.5E-13 90.2 10.6 51 201-253 105-155 (168)
474 cd04166 CysN_ATPS CysN_ATPS su 98.9 1.1E-09 2.4E-14 99.2 5.6 24 26-49 1-24 (208)
475 cd04158 ARD1 ARD1 subfamily. 98.9 3.2E-09 7E-14 92.7 8.3 54 26-99 1-54 (169)
476 COG4778 PhnL ABC-type phosphon 98.9 7.2E-10 1.6E-14 95.2 4.0 133 16-171 25-222 (235)
477 PLN03110 Rab GTPase; Provision 98.9 5.3E-09 1.1E-13 95.4 9.8 50 22-71 10-59 (216)
478 cd01892 Miro2 Miro2 subfamily. 98.9 7.8E-09 1.7E-13 90.4 10.4 47 25-71 5-52 (169)
479 cd01889 SelB_euk SelB subfamil 98.9 5.1E-10 1.1E-14 99.9 2.9 44 26-69 2-52 (192)
480 cd04137 RheB Rheb (Ras Homolog 98.9 5.6E-09 1.2E-13 91.8 9.5 45 25-70 2-46 (180)
481 cd01860 Rab5_related Rab5-rela 98.9 6.3E-09 1.4E-13 89.6 9.6 50 201-253 105-154 (163)
482 KOG1423 Ras-like GTPase ERA [C 98.9 9.2E-10 2E-14 102.4 4.4 61 24-101 72-133 (379)
483 cd01887 IF2_eIF5B IF2/eIF5B (i 98.9 1.3E-09 2.8E-14 94.3 5.1 43 26-68 2-44 (168)
484 cd03270 ABC_UvrA_I The excisio 98.9 2.2E-10 4.9E-15 105.2 0.2 61 121-183 154-225 (226)
485 cd00880 Era_like Era (E. coli 98.9 2.1E-09 4.5E-14 90.8 6.2 56 29-100 1-57 (163)
486 cd04116 Rab9 Rab9 subfamily. 98.9 6.8E-09 1.5E-13 90.3 9.5 49 202-253 114-162 (170)
487 cd04124 RabL2 RabL2 subfamily. 98.9 6.7E-09 1.4E-13 89.9 9.3 46 202-253 104-149 (161)
488 PF00005 ABC_tran: ABC transpo 98.9 9.6E-10 2.1E-14 92.5 3.5 44 21-75 8-51 (137)
489 cd04144 Ras2 Ras2 subfamily. 98.9 6.5E-09 1.4E-13 92.6 9.0 49 202-253 106-154 (190)
490 PRK15467 ethanolamine utilizat 98.9 5.5E-09 1.2E-13 90.6 8.2 47 202-253 91-138 (158)
491 cd00154 Rab Rab family. Rab G 98.9 5.1E-09 1.1E-13 88.8 7.8 48 202-252 105-152 (159)
492 cd04118 Rab24 Rab24 subfamily. 98.9 1.4E-08 3E-13 90.4 10.7 30 26-55 2-31 (193)
493 cd04111 Rab39 Rab39 subfamily. 98.9 1.3E-08 2.7E-13 92.6 10.5 49 202-253 109-157 (211)
494 KOG0054 Multidrug resistance-a 98.9 2.8E-10 6.1E-15 125.3 -0.5 154 14-188 533-728 (1381)
495 cd00878 Arf_Arl Arf (ADP-ribos 98.9 2.7E-09 5.9E-14 91.6 5.8 23 26-48 1-23 (158)
496 cd04125 RabA_like RabA-like su 98.9 1.4E-08 3E-13 90.2 10.2 23 26-48 2-24 (188)
497 cd04154 Arl2 Arl2 subfamily. 98.9 2.2E-09 4.8E-14 93.9 5.0 49 201-253 114-166 (173)
498 cd01891 TypA_BipA TypA (tyrosi 98.9 3E-08 6.5E-13 88.6 12.4 52 202-254 117-174 (194)
499 cd04151 Arl1 Arl1 subfamily. 98.9 2.2E-09 4.9E-14 92.4 4.8 23 26-48 1-23 (158)
500 KOG0927 Predicted transporter 98.9 1.6E-09 3.6E-14 107.6 4.3 148 16-181 404-585 (614)
No 1
>PTZ00258 GTP-binding protein; Provisional
Probab=100.00 E-value=1.8e-82 Score=617.44 Aligned_cols=357 Identities=64% Similarity=1.106 Sum_probs=319.8
Q ss_pred ccccccccccCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchH
Q 017295 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEI 92 (374)
Q Consensus 13 ~~~~vL~~i~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v 92 (374)
..+..+++...+.+|||||.||||||||||+||+..+.++||||||++|+.|.+.+++.++..++.++.|.+.++.++++
T Consensus 10 ~~~~~~~~~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~l 89 (390)
T PTZ00258 10 EKKVLLGRPGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDI 89 (390)
T ss_pred ccchhhccCCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEE
Confidence 34567888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhhhccccCCCC--------------------CCCCCceeEecCCCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHH
Q 017295 93 HDIAGLVRGAHEGQG--------------------AFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKS 152 (374)
Q Consensus 93 ~D~~gl~~~~~~~~~--------------------~~~~~~il~l~~~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~ 152 (374)
+|+||+..+++.+.+ +|.++.+.|+.+..||.+++.++++++..+|+..++++++++.+.
T Consensus 90 vDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f~d~~v~h~~~~~dp~~d~~~i~~EL~~~d~~~~ek~~~~~~k~ 169 (390)
T PTZ00258 90 TDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAFEDEDITHVEGEIDPVRDLEIISSELILKDLEFVEKRLDELTKK 169 (390)
T ss_pred EECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCCCCCCccccCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 999999988877644 455555556656679999999999999999999999999998865
Q ss_pred HHccCc-cchHHHHHHHHHHHHHHhCCCceeccCCChhHHHHHHhccccccCCEEEEEcCCCccccccccccHHHHHHHH
Q 017295 153 MKRSND-KQLKIEHELCQRVKAWLQDGKDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWV 231 (374)
Q Consensus 153 ~~~~~~-H~~~~~~~~~d~v~~~L~~G~iv~~~~~~~~~~~~l~~~~~~~~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~ 231 (374)
.+.... .........+++|+.+|++|++++..+|++++...+..+.+++.||+|||+|+++.|+....+++++.+++++
T Consensus 170 ~~~~~~~~~~~~~~~~l~~v~~~L~~~~~~~~~~~~~~e~~~l~~l~llt~KP~iyv~N~~E~D~~~~~~~~~~~l~~~~ 249 (390)
T PTZ00258 170 RKKKKKKKEEKVELDVLKKVLEWLEEGKPVRDGDWTDKEIEILNEYQLLTAKPMIYLVNMSEKDFIRQKNKWLAKIKEWV 249 (390)
T ss_pred hccccchhhHHHHHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhchhhcCCEEEEEECchhhhcccchHHHHHHHHHH
Confidence 421111 2234456778999999999999988899999999999999999999999999996665223456788888887
Q ss_pred HhhCCCeEEEeeHHHHHHhcCC-ChhHHHHHHHhccc-cccHHHHHHHHHhhcCceeeeccCCCCeeeEEecCCCChhHh
Q 017295 232 QEHGGEQIIPFSCALERNLADM-PPDEAAKYCEENKV-QSALPKIIKTGFSAINLIYFFTAGPDEVKCWQIRRQTKAPQA 309 (374)
Q Consensus 232 ~~~~~~~~i~vSa~~e~~l~~l-~~~~~~~~~~~~~~-~~~l~~l~~~~~~~L~li~~ft~~~~e~~~~~i~~gsta~~~ 309 (374)
..+.+.++|++||+.|.+|.+| +++++.+||+++|. +++++++++++|++||||+|||+||+|+|||+|++||||+||
T Consensus 250 ~~~~~~~~v~~sa~~E~el~~l~~~~e~~~fl~~~g~~~~gl~~li~~~~~lL~li~ffT~g~~e~raw~i~~Gsta~~a 329 (390)
T PTZ00258 250 GEKGGGPIIPYSAEFEEELAELGSEEERKEYLEEYGIKQSMLDKIIKTGYKLLNLIHFFTAGPDEVRCWTIQKGTKAPQA 329 (390)
T ss_pred HhcCCCeEEEeeHHHHHHHHhcCCHHHHHHHHHHcCCCcccHHHHHHHHHHHhCCEEEEcCCCCceeEEEeCCCCcHHHH
Confidence 6543467999999999999999 99999999999996 999999999999999999999999999999999999999999
Q ss_pred hhhcchhhhcceEEEEEecchhhhhcCChHHHhhcCcccccCCcceecCCCEEEEEeecC
Q 017295 310 AGTIHTDFERGFICAEVMKFDDLKELGSEPAVKAAGKYKQEGKTYVVQDGDIIFFKFNVS 369 (374)
Q Consensus 310 a~~IHsd~~~~f~~A~v~~~~d~~~~~~~~~~~~~g~~~~~g~dy~~~dgDii~~~~~~~ 369 (374)
||+|||||+||||||+||+|+||++|||+++||++|++|++||||+|||||||+|||||+
T Consensus 330 Ag~IHsD~~kgFi~Aev~~~~d~~~~g~~~~ak~~g~~r~eGkdYiv~DGDIi~f~fnv~ 389 (390)
T PTZ00258 330 AGVIHSDFEKGFICAEVMKYEDFLELGSEAAVKAEGKYRQEGKDYVVQDGDIIFFKFNVS 389 (390)
T ss_pred HhhhhhHHhhCcEEEEECcHHHHHHcCCHHHHHhcCceeeeCCceEecCCCEEEEEecCC
Confidence 999999999999999999999999999999999999999999999999999999999996
No 2
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=100.00 E-value=1.6e-81 Score=604.19 Aligned_cols=343 Identities=48% Similarity=0.834 Sum_probs=308.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhccc
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~~~ 102 (374)
+++++||||.||||||||||+|||..+.++||||||++|+.|.+.+++.++..++..+.|++.++..++++|+||+.+++
T Consensus 1 m~~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a 80 (364)
T PRK09601 1 MGLKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA 80 (364)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence 35789999999999999999999999888999999999999999999988888999999999999999999999999888
Q ss_pred cCCCC--------------------CCCCCceeEecCCCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCccchH
Q 017295 103 HEGQG--------------------AFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLK 162 (374)
Q Consensus 103 ~~~~~--------------------~~~~~~il~l~~~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~H~~~ 162 (374)
+.+.+ +|.++.+.|+.+..||.+++.++.+|+..+|+..++++++++.+..+.+ .....
T Consensus 81 ~~g~glg~~fL~~i~~aD~li~VVd~f~d~~~~~~~~~~dP~~d~~~i~~EL~~~d~~~~ek~~~k~~k~~~~~-~~~~~ 159 (364)
T PRK09601 81 SKGEGLGNQFLANIREVDAIVHVVRCFEDDNITHVEGKVDPIRDIETINTELILADLETVEKRLERLEKKAKGG-DKEAK 159 (364)
T ss_pred ChHHHHHHHHHHHHHhCCEEEEEEeCCccCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcc-chhHH
Confidence 77644 3333333343445689999999999999999999999999998765432 12235
Q ss_pred HHHHHHHHHHHHHhCCCceeccCCChhHHHHHHhccccccCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEe
Q 017295 163 IEHELCQRVKAWLQDGKDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPF 242 (374)
Q Consensus 163 ~~~~~~d~v~~~L~~G~iv~~~~~~~~~~~~l~~~~~~~~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~v 242 (374)
....++.+|+..|++|+.++...|+++|...++.+.+++.||+|||+|++|.|+. ..+++++.+.+++..+ +.++|++
T Consensus 160 ~e~~~l~~v~~~Le~~~~~~~~~~~~~e~~~l~~~~llt~KP~i~v~N~~e~~~~-~~~~~~~~i~~~~~~~-~~~~i~~ 237 (364)
T PRK09601 160 AELELLEKLLEHLEEGKPARTLELTDEEEKLLKSLQLLTAKPVLYVANVDEDDLA-DGNPYVKKVREIAAKE-GAEVVVI 237 (364)
T ss_pred HHHHHHHHHHHHHHcCCCcccCCCCHHHHHHHHHhcccccCCeEEEEECCccccc-cccHHHHHHHHHHHHc-CCeEEEE
Confidence 5677889999999999998888999999999999999999999999999987654 2467888888888665 6789999
Q ss_pred eHHHHHHhcCCChhHHHHHHHhccc-cccHHHHHHHHHhhcCceeeeccCCCCeeeEEecCCCChhHhhhhcchhhhcce
Q 017295 243 SCALERNLADMPPDEAAKYCEENKV-QSALPKIIKTGFSAINLIYFFTAGPDEVKCWQIRRQTKAPQAAGTIHTDFERGF 321 (374)
Q Consensus 243 Sa~~e~~l~~l~~~~~~~~~~~~~~-~~~l~~l~~~~~~~L~li~~ft~~~~e~~~~~i~~gsta~~~a~~IHsd~~~~f 321 (374)
||+.|.+|.+|+++++.+||+++|. +++++++++++|++||||+|||+|++|+|||+|++||||+||||+|||||+|||
T Consensus 238 sa~~E~el~~l~~ee~~~fl~~~g~~~s~~~~ii~~~~~~L~li~fftvg~~evrawti~~GstA~~aAg~IHsD~~kgF 317 (364)
T PRK09601 238 CAKIEAEIAELDDEEKAEFLEELGLEESGLDRLIRAGYELLGLITYFTAGPKEVRAWTIKKGTTAPQAAGVIHTDFEKGF 317 (364)
T ss_pred EHHHHHHHHcCCHHHHHHHHHHcCCcchhHHHHHHHHHHHhCCEEEecCCCCeEEEEEeCCCCchHHHhhcchhhHhhcc
Confidence 9999999999998899999999995 899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecchhhhhcCChHHHhhcCcccccCCcceecCCCEEEEEeec
Q 017295 322 ICAEVMKFDDLKELGSEPAVKAAGKYKQEGKTYVVQDGDIIFFKFNV 368 (374)
Q Consensus 322 ~~A~v~~~~d~~~~~~~~~~~~~g~~~~~g~dy~~~dgDii~~~~~~ 368 (374)
|||+|++|+||++|||++.||++|++|++||||+|||||||+||||+
T Consensus 318 I~AeVi~~~d~~~~g~~~~ak~~gk~rleGkdY~v~DGDIi~f~fn~ 364 (364)
T PRK09601 318 IRAEVISYDDLIEYGSEAGAKEAGKVRLEGKDYIVQDGDVMHFRFNV 364 (364)
T ss_pred EEEEEecHHHHHHcCCHHHHHHccceeccCCceEecCCCEEEEEcCC
Confidence 99999999999999999999999999999999999999999999996
No 3
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=100.00 E-value=2.2e-79 Score=589.37 Aligned_cols=342 Identities=39% Similarity=0.620 Sum_probs=309.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhccc
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~~-~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~~~ 102 (374)
++++||||.||+|||||||+||+..+ ++++|||||++|+.|++.++|.++..++..+.|.+..++.+++.|++|+++++
T Consensus 2 ~lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA 81 (368)
T TIGR00092 2 GLSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA 81 (368)
T ss_pred CceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence 47899999999999999999999999 99999999999999999999999999999999999988899999999999999
Q ss_pred cCCCC--------------------CCCCCceeEecCCCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCccchH
Q 017295 103 HEGQG--------------------AFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLK 162 (374)
Q Consensus 103 ~~~~~--------------------~~~~~~il~l~~~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~H~~~ 162 (374)
+.|.+ +|.++.+.|+.+..||.+++.++++++...|+..++++++++.+..+.+ ....
T Consensus 82 s~g~Glgn~fL~~ir~~d~l~hVvr~f~d~~i~H~~~~~dp~~d~~~i~~EL~l~d~~~~ek~l~r~~k~~k~~--k~~~ 159 (368)
T TIGR00092 82 SKGEGLGNQFLANIREVDIIQHVVRCFEDDIIHHVGNVDDPRDDFEIIDEELLKADEFLVEKRIGRSKKSAEGG--KDKK 159 (368)
T ss_pred hcccCcchHHHHHHHhCCEEEEEEeCCCCcccCccCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcc--hhhH
Confidence 88765 7777777888788899999999999999999999999999998765332 2345
Q ss_pred HHHHHHHHHHHHHhCCCceeccCCChhHHHHHHhccccccCCEEEEEcCCCccccccccccHHHHHHHHHhh--CCCeEE
Q 017295 163 IEHELCQRVKAWLQDGKDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEH--GGEQII 240 (374)
Q Consensus 163 ~~~~~~d~v~~~L~~G~iv~~~~~~~~~~~~l~~~~~~~~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~--~~~~~i 240 (374)
....++.+++.+|++|++++...+++++...++.+.+++.||++||+|..+.+....++.+...++ +...+ .+..++
T Consensus 160 ~e~~ll~~~~~~Le~~~~~r~~~~~~ee~~~~~~~~llt~Kp~~~v~N~~e~~~~~~n~~~~~~~~-~~~~~~~~~~~~~ 238 (368)
T TIGR00092 160 EELLLLEIILPLLNGGQMARHVDLSKEELILIKSLNLLTKKPIILIANVSEDYLRNLNNNYLLIVE-WIAAYSKGDPKVV 238 (368)
T ss_pred HHHHHHHHHHHHHhCCCeeccCCCCHHHHHHHHhCcchhhCCEEEEEECCHHHhhhcccHHHHHHH-HHhhcCcCCCeEE
Confidence 567788999999999999987788999999999999999999999999987554321134444454 66553 356799
Q ss_pred EeeHHHHHHhcCCChhHHHHHHHhccc-cc-cHHHHHHHHHhhcCceeeeccCCCCeeeEEecCCCChhHhhhhcchhhh
Q 017295 241 PFSCALERNLADMPPDEAAKYCEENKV-QS-ALPKIIKTGFSAINLIYFFTAGPDEVKCWQIRRQTKAPQAAGTIHTDFE 318 (374)
Q Consensus 241 ~vSa~~e~~l~~l~~~~~~~~~~~~~~-~~-~l~~l~~~~~~~L~li~~ft~~~~e~~~~~i~~gsta~~~a~~IHsd~~ 318 (374)
++||+.|.++.+|+++|+.+||+++|+ +| ++++|++..|++|+|++|||+|++|+|||+|++|+||++|||+|||||+
T Consensus 239 ~~~a~~E~el~~l~~ee~~~fl~~~g~~~s~~~~~ii~~~y~lL~L~sFfT~g~~EvRaWti~~G~~Ap~AAG~IHsDfe 318 (368)
T TIGR00092 239 FVCALEESELSELDDEERQEFLQKLGLTESAGLNIIIRARYKLLLLSFFFTGGKEEVRAWTRKGGWAAPQAAGIIHTDFE 318 (368)
T ss_pred EeEHHHHHHHhcCCHHHHHHHHHHcCCcccchHHHHHHHHHHHhCeeEEEcCCCceeEEeecCCCCchhHhcCCcccccc
Confidence 999999999999999999999999995 88 9999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEecchhhhhcCChHHHhhcCcccccCCcceecCCCEEEEEeec
Q 017295 319 RGFICAEVMKFDDLKELGSEPAVKAAGKYKQEGKTYVVQDGDIIFFKFNV 368 (374)
Q Consensus 319 ~~f~~A~v~~~~d~~~~~~~~~~~~~g~~~~~g~dy~~~dgDii~~~~~~ 368 (374)
||||||||++|+||++|||++.||++|++|++||||+|||||||+|||||
T Consensus 319 kgFIrAEV~~yddl~~~gs~~~~k~~Gk~r~eGK~YivqDGDIi~f~fnv 368 (368)
T TIGR00092 319 TGFIAAEVISWDDFIYKKSSQGAKKGGLMRLEGKYYVVDDGDVLFFAFNV 368 (368)
T ss_pred cCceEEEEecHHHHHHcCCHHHHHhcCchhhcCCeEEeeCCeEEEEecCC
Confidence 99999999999999999999999999999999999999999999999996
No 4
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-77 Score=567.78 Aligned_cols=344 Identities=47% Similarity=0.791 Sum_probs=315.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhcc-CCCCccccchHhhHhhhhcc
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFK-PKSAVPAFLEIHDIAGLVRG 101 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~-~~~~~~~~~~v~D~~gl~~~ 101 (374)
++.++||||.||+|||||||+||...++++||||||++|+.|.+++++.++..++.++. +++..+..++++|++||+++
T Consensus 1 m~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G 80 (372)
T COG0012 1 MSLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG 80 (372)
T ss_pred CCceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence 45789999999999999999999999899999999999999999999999999999998 67778889999999999999
Q ss_pred ccCCCC--------------------CCCCCceeEecCCCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccC--cc
Q 017295 102 AHEGQG--------------------AFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSN--DK 159 (374)
Q Consensus 102 ~~~~~~--------------------~~~~~~il~l~~~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~--~H 159 (374)
+|+|+| ||.+..+.|+.+.+||.+|+.+++.|+..+|++.+++.++++.+.++.++ ..
T Consensus 81 As~GeGLGNkFL~~IRevdaI~hVVr~f~d~di~hv~~~vDP~~DIe~I~~EL~l~d~~~lek~~~r~~k~a~~~~~~~k 160 (372)
T COG0012 81 ASKGEGLGNKFLDNIREVDAIIHVVRCFGDTDIEHVEGKVDPVEDIEIINTELILWDLESLEKRWERLEKRAKAGKKLDK 160 (372)
T ss_pred cccCCCcchHHHHhhhhcCeEEEEEEecCCCcccCCCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHH
Confidence 999887 67777777777789999999999999999999999999999998886554 35
Q ss_pred chHHHHHHHHHHHHHHhCCCceec---cCCChhHHHHHHhccccccCCEEEEEcCCCccccccccccHHHHHHHHHhhCC
Q 017295 160 QLKIEHELCQRVKAWLQDGKDVRL---GDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGG 236 (374)
Q Consensus 160 ~~~~~~~~~d~v~~~L~~G~iv~~---~~~~~~~~~~l~~~~~~~~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~ 236 (374)
.+.+...++..+...|.+|+..+. ..|++++...+..+.+++.||+|||+||+|.+... .+++++.++++...+ +
T Consensus 161 ~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~e~~~~l~~l~llt~KP~lyvaN~~e~~~~~-~n~~~~~i~~~~~~~-~ 238 (372)
T COG0012 161 ELKEELSLLGKLEEHLEEGKPARGLDLSKWSEEDLEALASLNLLTAKPMLYVANVSEDDLAN-LNEYVKRLKELAAKE-N 238 (372)
T ss_pred HHHHHHHHHHhHHHHHHhhhhhhcCCcccCCHHHHHHHHHhhhhhcCCeEEEEECCcccccc-hhHHHHHHHHHhhhc-C
Confidence 666777888888888999988653 46999999999999999999999999999977643 366789999988665 5
Q ss_pred CeEEEeeHHHHHHhcCCCh-hHHHHHHHhccc-cccHHHHHHHHHhhcCceeeeccCCCCeeeEEecCCCChhHhhhhcc
Q 017295 237 EQIIPFSCALERNLADMPP-DEAAKYCEENKV-QSALPKIIKTGFSAINLIYFFTAGPDEVKCWQIRRQTKAPQAAGTIH 314 (374)
Q Consensus 237 ~~~i~vSa~~e~~l~~l~~-~~~~~~~~~~~~-~~~l~~l~~~~~~~L~li~~ft~~~~e~~~~~i~~gsta~~~a~~IH 314 (374)
.++||+||+.|.+|.+|++ +++.+|+..+|+ +++|++++++.|.+|||++|||+|++|+|+|++++|+|++|+||.||
T Consensus 239 ~~vV~~sA~~E~eL~~l~~~~e~~~F~~~~g~~~~~l~~~i~~~y~~lgl~~~ft~g~~evrawti~~g~kap~aaG~Ih 318 (372)
T COG0012 239 AEVVPVSAAIELELRELADAEEKGEFLIELGQKESGLNELIRAGYGLLGLQTYFTAGVKEVRAWTIKDGSKAPDAAGVIH 318 (372)
T ss_pred CcEEEeeHHHHHHHHhCccccchhhHHHhcCcchhHHHHHHHHHhcccchhHHHhhcCCeEEEEEeccCCcccccCCccc
Confidence 7899999999999999997 889999999996 79999999999999999999999999999999999999999999999
Q ss_pred hhhhcceEEEEEecchhhhhcCChHHHhhcCcccccCCcceecCCCEEEEEeec
Q 017295 315 TDFERGFICAEVMKFDDLKELGSEPAVKAAGKYKQEGKTYVVQDGDIIFFKFNV 368 (374)
Q Consensus 315 sd~~~~f~~A~v~~~~d~~~~~~~~~~~~~g~~~~~g~dy~~~dgDii~~~~~~ 368 (374)
|||+++||+|+|++|+||++|||+..||.+|++|.+||||+|||||||+||||+
T Consensus 319 ~Dfe~~fi~aevi~~~d~i~~~~~~~Akeag~~r~~GkdY~vqdGDVi~Fk~~~ 372 (372)
T COG0012 319 PDFEKGFIRAEVISYADLIHYGGEAAAKEAGKRRLEGKDYIVQDGDVIHFKFNV 372 (372)
T ss_pred cchhhccccceEeeHHHHHhcCcHHHHHHhcceeeccccceecCCCEEEEEecC
Confidence 999999999999999999999999999999999999999999999999999996
No 5
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=100.00 E-value=5.9e-77 Score=550.60 Aligned_cols=364 Identities=62% Similarity=0.994 Sum_probs=332.5
Q ss_pred CCCcccCCcCCcccccccccccCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhc
Q 017295 1 MPPKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLF 80 (374)
Q Consensus 1 ~~~~~~~~~~~~~~~~vL~~i~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~ 80 (374)
|||++- . ...+..+.+.+....+||||.||+|||||||+||...+.++||||||++|+.+.|.+++.+++.+++.|
T Consensus 1 ~~~kk~-~---~~~~~~~gR~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y 76 (391)
T KOG1491|consen 1 MPPKKD-I---EEKKVLLGRDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIY 76 (391)
T ss_pred CCcccc-c---ccccccccCCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhc
Confidence 566652 1 346788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccccchHhhHhhhhccccCCCC--------------------CCCCCceeEecCCCCCchhHHHHHHHHHhhcHH
Q 017295 81 KPKSAVPAFLEIHDIAGLVRGAHEGQG--------------------AFEDPDIIHVDDSVDPVRDLEVISAELRLKDIE 140 (374)
Q Consensus 81 ~~~~~~~~~~~v~D~~gl~~~~~~~~~--------------------~~~~~~il~l~~~~dP~~~l~ilde~l~~~D~~ 140 (374)
.|+..+++.+++.|++||.+++|.|.| +|.+..+.|+.+.+||.+|+.++.+|+..+|.+
T Consensus 77 ~~~~~vpa~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~d~di~hve~~vDPvrDieii~~EL~lkd~e 156 (391)
T KOG1491|consen 77 GPKSKVPAFLTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFEDTDIIHVEGGVDPVRDIEIIQEELRLKDLE 156 (391)
T ss_pred CCcceeeeeEEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecCcccceeccCCCCchhhHHHHHHHHHHhHHH
Confidence 998889999999999999999999877 778888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHccCc----cchHHHHHHHHHHHHHHhCC-Cc-eeccCCChhHHHHHHhccccccCCEEEEEcCCCc
Q 017295 141 FMERRIEDVEKSMKRSND----KQLKIEHELCQRVKAWLQDG-KD-VRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEK 214 (374)
Q Consensus 141 ~~~~~~~~i~~~~~~~~~----H~~~~~~~~~d~v~~~L~~G-~i-v~~~~~~~~~~~~l~~~~~~~~kP~i~v~Nk~d~ 214 (374)
.+++.++.+.+...+.+. ........+..+|+..|-+| +. .....|++++++.+..+++++.||+||++|++|.
T Consensus 157 ~l~k~~e~~~k~~~~~~~~~~~~q~k~e~~~l~~v~~~ll~~kk~~~~~~~W~d~eieiln~~~lLt~kP~Vyl~N~se~ 236 (391)
T KOG1491|consen 157 FLEKRLEKLEKKHKRTKSNLETKQLKFEYGLLEKVKEKLLDGKKPVRPKEKWNDEEIEILNKLFLLTAKPTVYLLNLSEH 236 (391)
T ss_pred HHHHHHHHHhhhhhcccCcHHHHHHHHHHhHHHHHHHHHhccCCCCcchhhcCHHHHHHHHHhhhhhcCceEEEEecCcc
Confidence 999999999887655443 34445566778887766544 44 4458999999999999999999999999999999
Q ss_pred cccccccccHHHHHHHHHhhC-CCeEEEeeHHHHHHhcCCChhHHHHHHHhccccccHHHHHHHHHhhcCceeeeccCCC
Q 017295 215 DYQRKKNKFLPKIHAWVQEHG-GEQIIPFSCALERNLADMPPDEAAKYCEENKVQSALPKIIKTGFSAINLIYFFTAGPD 293 (374)
Q Consensus 215 d~~~~~~~~~~~l~~~~~~~~-~~~~i~vSa~~e~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~L~li~~ft~~~~ 293 (374)
|..+.+++++..++++...+. ++.++++|+..|..+.+|.+||+.+|+++++.+++|++++...|+.|+||.|||+||+
T Consensus 237 dy~r~knk~l~~i~~w~~~~~~g~~~i~fs~~~e~ql~~~~~EE~~~~~~~~~~~s~L~~iI~~~~~~L~li~fFt~G~~ 316 (391)
T KOG1491|consen 237 DYARKKNKKLPKIKEWVDEVSPGDVVIVFSAAFESQLFELYEEEAVKELEDLGDSSALPKIIKTGYSALNLIVFFTCGED 316 (391)
T ss_pred hhhhHHHHHHhhhhhhhhccCCCCeEEEehHHHHHHhhccCHHHHHHHHHhcccccchhHHHHHHHHhhCceEEEeeCCc
Confidence 988777889999999986543 6789999999999999999999999999999889999999999999999999999999
Q ss_pred CeeeEEecCCCChhHhhhhcchhhhcceEEEEEecchhhhhcCChHHHhhcCcccccCCcceecCCCEEEEEeec
Q 017295 294 EVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVMKFDDLKELGSEPAVKAAGKYKQEGKTYVVQDGDIIFFKFNV 368 (374)
Q Consensus 294 e~~~~~i~~gsta~~~a~~IHsd~~~~f~~A~v~~~~d~~~~~~~~~~~~~g~~~~~g~dy~~~dgDii~~~~~~ 368 (374)
|+|+|+|++|++|++|||.|||||+++|+.|+|+.|+||+.|||+.++|..|+.+++||+|+|+||||++||||.
T Consensus 317 eV~~WtIr~gt~ap~aagvihsdf~k~Fi~aev~~f~D~~~~k~e~a~k~~Gk~~~~Gk~yiVedGDIi~FK~~~ 391 (391)
T KOG1491|consen 317 EVRAWTIRKGTKAPQAAGVIHSDFEKGFIMAEVMKFEDFKEYKSESACKAAGKYRQVGKEYIVEDGDIIFFKFNP 391 (391)
T ss_pred hheeeehhhccccccccceeeehhhhhccccceeeeehHHHhcCHHHHHHhcchhhcCceeeecCCCEEEEeecC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999985
No 6
>PRK09602 translation-associated GTPase; Reviewed
Probab=100.00 E-value=5.6e-54 Score=422.10 Aligned_cols=316 Identities=26% Similarity=0.379 Sum_probs=246.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeC----Ccchhhhhhhcc---CCCCccccchHhhHhh
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIP----DERFEWLCQLFK---PKSAVPAFLEIHDIAG 97 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~----g~~~~~l~~~~~---~~~~~~~~~~v~D~~g 97 (374)
.+|||||.||+|||||||+||+..+.+++|||||++|+.|.+.+. +.++..++.... +....+..++++|++|
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 479999999999999999999999989999999999999999874 334444332211 2223456689999999
Q ss_pred hhccccCCCC---CC-----CCCceeEecCC---------------CCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 017295 98 LVRGAHEGQG---AF-----EDPDIIHVDDS---------------VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMK 154 (374)
Q Consensus 98 l~~~~~~~~~---~~-----~~~~il~l~~~---------------~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~ 154 (374)
+..+++.+.+ .| ..+.++|+.++ .||.+++.++.++|..+|+..+++.+..+.+..+
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~~~~~ 161 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGILEKNWEKFSRKAQ 161 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 9988877655 22 34556666554 4799999999999999999999999988876543
Q ss_pred ccCc-cc--hHHHHHHH----HHHHHHHh-CCCceeccCCChhHHHHHHhccccccCCEEEEEcCCCccccccccccHHH
Q 017295 155 RSND-KQ--LKIEHELC----QRVKAWLQ-DGKDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPK 226 (374)
Q Consensus 155 ~~~~-H~--~~~~~~~~----d~v~~~L~-~G~iv~~~~~~~~~~~~l~~~~~~~~kP~i~v~Nk~d~d~~~~~~~~~~~ 226 (374)
.++. .. +......+ ++|+.+|+ .|..++...|++++...+..+.+++.||+|||+||+|.. . .++.+..
T Consensus 162 ~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D~~--~-~~~~l~~ 238 (396)
T PRK09602 162 AEKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLELARELRKISKPMVIAANKADLP--P-AEENIER 238 (396)
T ss_pred cCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHHHHhhhhcCCCEEEEEEchhcc--c-chHHHHH
Confidence 3221 11 11111122 66778887 677777778999999999999999999999999999742 1 1233344
Q ss_pred HHHHHHhhCCCeEEEeeHHHHHHhcC---------------------CChhHH------HHHHHhccccccHHHHH-HHH
Q 017295 227 IHAWVQEHGGEQIIPFSCALERNLAD---------------------MPPDEA------AKYCEENKVQSALPKII-KTG 278 (374)
Q Consensus 227 l~~~~~~~~~~~~i~vSa~~e~~l~~---------------------l~~~~~------~~~~~~~~~~~~l~~l~-~~~ 278 (374)
+.++ ++.+++++||+.|.++.+ +++++. .+||..+|. +++++++ +++
T Consensus 239 i~~~----~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~d~ltd~~~r~~E~IRk~l~~~g~-~~~~~~i~~~~ 313 (396)
T PRK09602 239 LKEE----KYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEILGELSEKQKKALEYIREVLKKYGG-TGVQEAINTAV 313 (396)
T ss_pred HHhc----CCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCccccCCHHHHHHHHHHHHHHHHhCC-chHHHHHHHHH
Confidence 4443 356799999999999877 443331 378888888 8999999 999
Q ss_pred HhhcCceeeeccCC----------CCeeeEEecCCCChhHhhhhcchhhhcceEEEEEecchhhhhcCChHHHhhcCccc
Q 017295 279 FSAINLIYFFTAGP----------DEVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVMKFDDLKELGSEPAVKAAGKYK 348 (374)
Q Consensus 279 ~~~L~li~~ft~~~----------~e~~~~~i~~gsta~~~a~~IHsd~~~~f~~A~v~~~~d~~~~~~~~~~~~~g~~~ 348 (374)
|++|+||+|||+++ ++.+||++++||||+|+|++|||||+++||||+.| | +.|
T Consensus 314 ~~~L~li~~yt~~~~~~~~~~~g~~~~~~~~l~~g~t~~d~A~~IH~d~~~~fi~A~~~--------------~---~~~ 376 (396)
T PRK09602 314 FDLLDMIVVYPVEDENKLTDKKGNVLPDAFLLPKGSTARDLAYKIHTDIGEGFLYAIDA--------------R---TKR 376 (396)
T ss_pred HHHhCCEEEEecCcccccccccCcccceeEEECCCCCHHHHHHHHHHHHHhhceehhcc--------------c---CCc
Confidence 99999999999975 66779999999999999999999999999999932 3 359
Q ss_pred ccCCcceecCCCEEEEE
Q 017295 349 QEGKTYVVQDGDIIFFK 365 (374)
Q Consensus 349 ~~g~dy~~~dgDii~~~ 365 (374)
++|+||+|||||||+|.
T Consensus 377 ~~g~~~~l~dgDiv~i~ 393 (396)
T PRK09602 377 RIGEDYELKDGDVIKIV 393 (396)
T ss_pred ccCCCcEecCCCEEEEE
Confidence 99999999999999997
No 7
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=100.00 E-value=2.9e-48 Score=358.58 Aligned_cols=281 Identities=25% Similarity=0.327 Sum_probs=217.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhcccc
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~~~~ 103 (374)
..+++|||+|++|||||||.|||.++++++|||||+.|.+|++.++|.. ++++|+||++.+++
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~-----------------IQild~Pgii~gas 125 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQ-----------------IQLLDLPGIIEGAS 125 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCce-----------------EEEEcCcccccCcc
Confidence 4569999999999999999999999999999999999999999999865 89999999999998
Q ss_pred CCCC--------CCCCCceeEecCCCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc--cchHHHH-HHHHHHH
Q 017295 104 EGQG--------AFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND--KQLKIEH-ELCQRVK 172 (374)
Q Consensus 104 ~~~~--------~~~~~~il~l~~~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~--H~~~~~~-~~~d~v~ 172 (374)
.|.+ +..++.++.+.|...+...++++.++|....+..-.......-+....++. +....+. --.+.|+
T Consensus 126 ~g~grG~~vlsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir 205 (365)
T COG1163 126 SGRGRGRQVLSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVR 205 (365)
T ss_pred cCCCCcceeeeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHH
Confidence 8765 344567778888777765688888888887766333222211111112332 2111111 1245666
Q ss_pred HHHhCCCcee-----ccCCChhHHHHHHhccccccCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHH
Q 017295 173 AWLQDGKDVR-----LGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALE 247 (374)
Q Consensus 173 ~~L~~G~iv~-----~~~~~~~~~~~l~~~~~~~~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e 247 (374)
.+|++.++.. .++.+.+|+...-.- ...++|+|+|+||+|. .+ .+.+....+. ...+++||+.+
T Consensus 206 ~iL~Ey~I~nA~V~Ir~dvTlDd~id~l~~-nrvY~p~l~v~NKiD~--~~-----~e~~~~l~~~---~~~v~isa~~~ 274 (365)
T COG1163 206 AILREYRIHNADVLIREDVTLDDLIDALEG-NRVYKPALYVVNKIDL--PG-----LEELERLARK---PNSVPISAKKG 274 (365)
T ss_pred HHHHHhCcccceEEEecCCcHHHHHHHHhh-cceeeeeEEEEecccc--cC-----HHHHHHHHhc---cceEEEecccC
Confidence 7788777643 467887775443222 3679999999999963 21 2233333322 25899999986
Q ss_pred HHhcCCChhHHHHHHHhccccccHHHHHHHHHhhcCceeeeccCC----CCeeeEEecCCCChhHhhhhcchhhhcceEE
Q 017295 248 RNLADMPPDEAAKYCEENKVQSALPKIIKTGFSAINLIYFFTAGP----DEVKCWQIRRQTKAPQAAGTIHTDFERGFIC 323 (374)
Q Consensus 248 ~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~L~li~~ft~~~----~e~~~~~i~~gsta~~~a~~IHsd~~~~f~~ 323 (374)
.+ +++|.+.+|+.|++||+||+.| |...|.++++||||.|+|.+||+||.+.|+|
T Consensus 275 ~n---------------------ld~L~e~i~~~L~liRVYtK~~g~~pd~~~PlIlr~GsTV~Dvc~~IH~~l~~~Fry 333 (365)
T COG1163 275 IN---------------------LDELKERIWDVLGLIRVYTKPPGEEPDFDEPLILRRGSTVGDVCRKIHRDLVENFRY 333 (365)
T ss_pred CC---------------------HHHHHHHHHHhhCeEEEEecCCCCCCCCCCCeEEeCCCcHHHHHHHHHHHHHHhcce
Confidence 54 6788999999999999999964 5668999999999999999999999999999
Q ss_pred EEEecchhhhhcCChHHHhhcCcccccCCcceecCCCEEEEE
Q 017295 324 AEVMKFDDLKELGSEPAVKAAGKYKQEGKTYVVQDGDIIFFK 365 (374)
Q Consensus 324 A~v~~~~d~~~~~~~~~~~~~g~~~~~g~dy~~~dgDii~~~ 365 (374)
|.||+ ++||++| |++|.||+|+|+|||+|+
T Consensus 334 A~VWG----------kSvk~~~--QrVG~dHvLeD~DIV~I~ 363 (365)
T COG1163 334 ARVWG----------KSVKHPG--QRVGLDHVLEDEDIVEIH 363 (365)
T ss_pred EEEec----------cCCCCCc--cccCcCcCccCCCeEEEe
Confidence 99999 8999999 999999999999999997
No 8
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=100.00 E-value=1.7e-41 Score=317.53 Aligned_cols=253 Identities=49% Similarity=0.810 Sum_probs=218.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhccccCCC
Q 017295 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQ 106 (374)
Q Consensus 27 vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~~~~~~~ 106 (374)
+||||.||||||||||+|||.++.++||||||++|+.|.+.+++.++..++.++.|.+.+++.++++|+||+.++++.+.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999888765
Q ss_pred C--------------------CCCCCceeEecCCCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCccchHHHHH
Q 017295 107 G--------------------AFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHE 166 (374)
Q Consensus 107 ~--------------------~~~~~~il~l~~~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~H~~~~~~~ 166 (374)
+ +|.++.+.|+.+..||.+|+.++++++..+|+..++++++++.+..+++. ........
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f~d~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~ek~~~~l~k~~~~~~-~~~~~e~~ 159 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCFEDDDITHVEGSVDPVRDIEIINTELILADLETVEKRLERLEKKAKSGD-KEAKAELE 159 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCcCCCCccCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc-HHHHHHHH
Confidence 4 44444444444567999999999999999999999999999987654321 23455677
Q ss_pred HHHHHHHHHhCCCceeccCCChhHHHHHHhccccccCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHH
Q 017295 167 LCQRVKAWLQDGKDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCAL 246 (374)
Q Consensus 167 ~~d~v~~~L~~G~iv~~~~~~~~~~~~l~~~~~~~~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~ 246 (374)
++++|+.+|++|++++...|++++...++.+.+++.||++||+|++|.|+.. .+...+.+.++.... +.++|++||+.
T Consensus 160 ~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KP~i~v~N~~e~d~~~-~~~~~~~~~~~~~~~-~~~~i~~sa~~ 237 (274)
T cd01900 160 LLEKIKEHLEEGKPARSLELTEEEIEILNSLQLLTAKPVLYVANVSEDDLAN-GNNKVLKVREIAAKE-GAEVIPISAKI 237 (274)
T ss_pred HHHHHHHHHHcCCCcCcCCCCHHHHHHHHHHhHhhcCCceeecccCHHHhcc-ccHHHHHHHHHHhcC-CCeEEEeeHHH
Confidence 8899999999999998889999999999999999999999999999876542 334455555555443 66899999999
Q ss_pred HHHhcCCChhHHHHHHHhccc-cccHHHHHHHHHhhc
Q 017295 247 ERNLADMPPDEAAKYCEENKV-QSALPKIIKTGFSAI 282 (374)
Q Consensus 247 e~~l~~l~~~~~~~~~~~~~~-~~~l~~l~~~~~~~L 282 (374)
|.+|.+|+++|+.+|++++|+ ++++++|++++|++|
T Consensus 238 E~eL~~l~~ee~~~fl~~~gi~es~l~riI~~~y~~L 274 (274)
T cd01900 238 EAELAELDEEEAAEFLEELGLEESGLDRLIRAGYELL 274 (274)
T ss_pred HHHHHcCCHHHHHHHHHHcCCccccHHHHHHHHHhhC
Confidence 999999999999999999996 889999999999987
No 9
>PF06071 YchF-GTPase_C: Protein of unknown function (DUF933); InterPro: IPR013029 This domain is found at the C terminus of family of conserved hypothetical proteins found in both prokaryotes and eukaryotes. While the function of these proteins is not known, the crystal structure of P44681 from SWISSPROT from Haemophilus influenzae has been determined []. This protein consists of three domains: an N-terminal domain which has a mononucleotide binding fold typical for the P-loop NTPases, a central domain which forms an alpha-helical coiled coil, and this C-terminal domain which is composed of a six-stranded half-barrel curved around an alpha helix. The central domain and this domain are topologically similar to RNA-binding proteins, while the N-terminal region contains the features typical of GTP-dependent molecular switches. The purified protein was capable of binding both double-stranded nucleic acid and GTP. It was suggested, therefore, that this protein might be part of a nucleoprotein complex and could function as a GTP-dependent translation factor.; PDB: 1NI3_A 1JAL_A 2DWQ_B 2DBY_A 2OHF_A.
Probab=100.00 E-value=6.3e-43 Score=262.85 Aligned_cols=84 Identities=67% Similarity=1.122 Sum_probs=76.5
Q ss_pred ceeeeccCCCCeeeEEecCCCChhHhhhhcchhhhcceEEEEEecchhhhhcCChHHHhhcCcccccCCcceecCCCEEE
Q 017295 284 LIYFFTAGPDEVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVMKFDDLKELGSEPAVKAAGKYKQEGKTYVVQDGDIIF 363 (374)
Q Consensus 284 li~~ft~~~~e~~~~~i~~gsta~~~a~~IHsd~~~~f~~A~v~~~~d~~~~~~~~~~~~~g~~~~~g~dy~~~dgDii~ 363 (374)
||+|||+||+|+|||++++|+||++|||+|||||+||||+|||++|+||+++||++.||.+||+|++||||+|||||||+
T Consensus 1 L~tffT~G~~EvRaWti~~G~~Ap~aAG~IHsDfekgFI~Aevi~~~d~~~~~s~~~~k~~Gk~r~eGK~YivqDGDIi~ 80 (84)
T PF06071_consen 1 LITFFTAGPKEVRAWTIRKGTTAPQAAGVIHSDFEKGFIRAEVISYDDFVEYGSEAAAKEAGKLRLEGKDYIVQDGDIIH 80 (84)
T ss_dssp EEEEEEESSSEEEEEEEETT-BHHHHHHCC-THHHHHEEEEEEEEHHHHHHHTSHHHHHHTT-SEEEETT-B--TTEEEE
T ss_pred CceEEccCCCeEEEEEccCCCCHHHhHhHHHHHHHhhceEEEEEcHHHHHHcCCHHHHHHcCCccccCCceeEeCCCEEE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEee
Q 017295 364 FKFN 367 (374)
Q Consensus 364 ~~~~ 367 (374)
||||
T Consensus 81 f~fN 84 (84)
T PF06071_consen 81 FRFN 84 (84)
T ss_dssp EEE-
T ss_pred EEcC
Confidence 9998
No 10
>cd04867 TGS_YchF_C TGS_YchF_C: This subfamily represents TGS domain-containing YchF GTP-binding protein, a universally conserved GTPase whose function is unknown. The N-terminal domain of the YchF protein belongs to the Obg-like family of GTPases, and some members of the family contain a C-terminal TGS domain. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=100.00 E-value=2.9e-42 Score=257.36 Aligned_cols=83 Identities=80% Similarity=1.269 Sum_probs=82.2
Q ss_pred ceeeeccCCCCeeeEEecCCCChhHhhhhcchhhhcceEEEEEecchhhhhcCChHHHhhcCcccccCCcceecCCCEEE
Q 017295 284 LIYFFTAGPDEVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVMKFDDLKELGSEPAVKAAGKYKQEGKTYVVQDGDIIF 363 (374)
Q Consensus 284 li~~ft~~~~e~~~~~i~~gsta~~~a~~IHsd~~~~f~~A~v~~~~d~~~~~~~~~~~~~g~~~~~g~dy~~~dgDii~ 363 (374)
|++|||+||+|+|||++++|+||++|||+|||||+||||||||++|+||++|||++.||++|++|++||||+||||||++
T Consensus 1 L~tffT~G~~EvRAWti~~g~tAp~AAG~IHsDfekgFIrAeVi~~~d~i~~g~~~~ak~~Gkir~eGK~Yiv~DGDi~~ 80 (83)
T cd04867 1 LISFFTAGPDEVRAWTIRKGTKAPQAAGVIHTDFEKGFIRAEVMKYEDLVELGSEAAAKEAGKYRQEGKDYVVQDGDIIF 80 (83)
T ss_pred CccEECCCCCeEEEEEccCCCChHHhcCCcccccccCcEEEEEEcHHHHHHcCCHHHHHHcChhhhhCCceEeeCCeEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEe
Q 017295 364 FKF 366 (374)
Q Consensus 364 ~~~ 366 (374)
|||
T Consensus 81 f~f 83 (83)
T cd04867 81 FKF 83 (83)
T ss_pred EEC
Confidence 997
No 11
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=100.00 E-value=2.6e-34 Score=256.70 Aligned_cols=288 Identities=20% Similarity=0.297 Sum_probs=214.2
Q ss_pred cccccccccCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHh
Q 017295 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIH 93 (374)
Q Consensus 14 ~~~vL~~i~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~ 93 (374)
+..|+ -+.+.+|++||.|.+|||||+..||....++++|.|||+.-.+|.+.++|.. ++++
T Consensus 54 GFeV~--KsGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~-----------------IQll 114 (364)
T KOG1486|consen 54 GFEVL--KSGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGAN-----------------IQLL 114 (364)
T ss_pred Ceeee--ccCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCce-----------------EEEe
Confidence 34454 2456779999999999999999999999999999999999999999999865 8999
Q ss_pred hHhhhhccccCCCC--------CCCCCceeEecCCCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc---cchH
Q 017295 94 DIAGLVRGAHEGQG--------AFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND---KQLK 162 (374)
Q Consensus 94 D~~gl~~~~~~~~~--------~~~~~~il~l~~~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~---H~~~ 162 (374)
|.||++.++++|.+ +...+.++.+.|+..+...-.++..++....+..-++..+..-+..+.++. +-..
T Consensus 115 DLPGIieGAsqgkGRGRQviavArtaDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~ 194 (364)
T KOG1486|consen 115 DLPGIIEGASQGKGRGRQVIAVARTADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVP 194 (364)
T ss_pred cCcccccccccCCCCCceEEEEeecccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeec
Confidence 99999999998876 445677888888888866677888888777766332222221111112221 1000
Q ss_pred HHHHHHHHHHHHHhCCCce-----eccCCChhH-HHHHHhccccccCCEEEEEcCCCccccccccccHHHHHHHHHhhCC
Q 017295 163 IEHELCQRVKAWLQDGKDV-----RLGDWKAAD-IEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGG 236 (374)
Q Consensus 163 ~~~~~~d~v~~~L~~G~iv-----~~~~~~~~~-~~~l~~~~~~~~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~ 236 (374)
.-.---.-+..+|++.+|. ...+.+.+| +..+.. ...+.|++||-||+|. . .++++.... +.++
T Consensus 195 lT~~~ek~i~~ILheykI~Naevl~ReD~t~DdfIDvi~g--nr~Y~~ClYvYnKID~--v-----s~eevdrlA-r~Pn 264 (364)
T KOG1486|consen 195 LTHCDEKLIYTILHEYKIHNAEVLFREDCTVDDFIDVIEG--NRVYIKCLYVYNKIDQ--V-----SIEEVDRLA-RQPN 264 (364)
T ss_pred cccccHHHHHHHHHHHeeccceEEEecCCChHHHHHHHhc--cceEEEEEEEeeccce--e-----cHHHHHHHh-cCCC
Confidence 0000011223456666653 234566655 455543 3468999999999963 2 245666554 3344
Q ss_pred CeEEEeeHHHHHHhcCCChhHHHHHHHhccccccHHHHHHHHHhhcCceeeeccC----CCCeeeEEecCCCChhHhhhh
Q 017295 237 EQIIPFSCALERNLADMPPDEAAKYCEENKVQSALPKIIKTGFSAINLIYFFTAG----PDEVKCWQIRRQTKAPQAAGT 312 (374)
Q Consensus 237 ~~~i~vSa~~e~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~L~li~~ft~~----~~e~~~~~i~~gsta~~~a~~ 312 (374)
-+++|+.... ++++|++.+|+.|+|.++||+. ||+..|+++++|+|+.|+|-.
T Consensus 265 --svViSC~m~l---------------------nld~lle~iWe~l~L~rvYtKk~g~~Pdfdd~~vlr~g~tve~~C~~ 321 (364)
T KOG1486|consen 265 --SVVISCNMKL---------------------NLDRLLERIWEELNLVRVYTKKKGQRPDFDDPLVLRKGSTVEDVCHR 321 (364)
T ss_pred --cEEEEecccc---------------------CHHHHHHHHHHHhceEEEEecCCCCCCCCCCceEEeCCCcHHHHHHH
Confidence 4677875432 5889999999999999999995 578899999999999999999
Q ss_pred cchhhhcceEEEEEecchhhhhcCChHHHhhcCcccccCCcceecCCCEEEEE
Q 017295 313 IHTDFERGFICAEVMKFDDLKELGSEPAVKAAGKYKQEGKTYVVQDGDIIFFK 365 (374)
Q Consensus 313 IHsd~~~~f~~A~v~~~~d~~~~~~~~~~~~~g~~~~~g~dy~~~dgDii~~~ 365 (374)
||++|...|+||-||+ .+||+. +|++|-.|.+.|-|||.+-
T Consensus 322 iHr~l~~qfkyAlVWG----------tSakhs--PQrvgl~h~~~dEdvvqi~ 362 (364)
T KOG1486|consen 322 IHRTLAAQFKYALVWG----------TSAKHS--PQRVGLGHTLEDEDVVQIV 362 (364)
T ss_pred HHHHHHHhhceeeEec----------cccccC--cceeccccccccccceeee
Confidence 9999999999999999 889996 5999999999999999863
No 12
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.97 E-value=4.2e-32 Score=243.54 Aligned_cols=276 Identities=21% Similarity=0.322 Sum_probs=212.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhccccCC
Q 017295 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEG 105 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~~~~~~ 105 (374)
++|++|.|.+|||||+.-|+|...++++|-|||....+|.+.+.|.. ++++|.||++.++..|
T Consensus 61 ~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaK-----------------iqlldlpgiiegakdg 123 (358)
T KOG1487|consen 61 RVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAK-----------------IQLLDLPGIIEGAKDG 123 (358)
T ss_pred eeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccc-----------------eeeecCcchhcccccC
Confidence 69999999999999999999999999999999999999999988865 8999999999999877
Q ss_pred CC--------CCCCCceeEecCCCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----c-chHHHHHHHHHH
Q 017295 106 QG--------AFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----K-QLKIEHELCQRV 171 (374)
Q Consensus 106 ~~--------~~~~~~il~l~~~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H-~~~~~~~~~d~v 171 (374)
.+ +..+..++.+.|...|...-.+++.++.+..+....+..+...+..++++. | ++..+..++.+-
T Consensus 124 kgrg~qviavartcnli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~ey 203 (358)
T KOG1487|consen 124 KGRGKQVIAVARTCNLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEY 203 (358)
T ss_pred CCCccEEEEEeecccEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHh
Confidence 66 556788889999999999999999999999887544433332222223332 3 333333333222
Q ss_pred HHHHhCCCceeccCCChhH-HHHHHhccccccCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHh
Q 017295 172 KAWLQDGKDVRLGDWKAAD-IEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNL 250 (374)
Q Consensus 172 ~~~L~~G~iv~~~~~~~~~-~~~l~~~~~~~~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l 250 (374)
-+.+-.+....+.+.++ +..++.. +.+.|++|++||+|. . .++++.-.. . ....+|+||.++++
T Consensus 204 --R~hsAdi~Lr~DaT~DdLIdvVegn--r~yVp~iyvLNkIds--I-----SiEELdii~-~--iphavpISA~~~wn- 268 (358)
T KOG1487|consen 204 --RIHSADIALRFDATADDLIDVVEGN--RIYVPCIYVLNKIDS--I-----SIEELDIIY-T--IPHAVPISAHTGWN- 268 (358)
T ss_pred --hhcchheeeecCcchhhhhhhhccC--ceeeeeeeeecccce--e-----eeeccceee-e--ccceeecccccccc-
Confidence 11222233345666666 3444432 458999999999963 2 122332222 1 22479999999886
Q ss_pred cCCChhHHHHHHHhccccccHHHHHHHHHhhcCceeeeccC----CCCeeeEEecCC-CChhHhhhhcchhhhcceEEEE
Q 017295 251 ADMPPDEAAKYCEENKVQSALPKIIKTGFSAINLIYFFTAG----PDEVKCWQIRRQ-TKAPQAAGTIHTDFERGFICAE 325 (374)
Q Consensus 251 ~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~L~li~~ft~~----~~e~~~~~i~~g-sta~~~a~~IHsd~~~~f~~A~ 325 (374)
++.++..+++.|+|+++||+. ||...|.+++.+ +|+.|+|.+||+++.+.|.+|-
T Consensus 269 --------------------~d~lL~~mweyL~LvriYtkPKgq~PDy~~pVvLs~~~~sv~dfc~~ih~~~~~~fk~al 328 (358)
T KOG1487|consen 269 --------------------FDKLLEKMWEYLKLVRIYTKPKGQPPDYTSPVVLSSERRSVEDFCNKIHKSILKQFKYAL 328 (358)
T ss_pred --------------------hHHHHHHHhhcchheEEecCCCCCCCCCCCCceecCCcccHHHHHHHHHHHHHHhhhhhe
Confidence 567899999999999999995 567788888887 7999999999999999999999
Q ss_pred EecchhhhhcCChHHHhhcCcccccCCcceecCCCEEEEE
Q 017295 326 VMKFDDLKELGSEPAVKAAGKYKQEGKTYVVQDGDIIFFK 365 (374)
Q Consensus 326 v~~~~d~~~~~~~~~~~~~g~~~~~g~dy~~~dgDii~~~ 365 (374)
||+ .++|+++ |++|++|++.|-|||.|.
T Consensus 329 vwg----------~s~kh~p--q~vg~~h~l~dedvv~iv 356 (358)
T KOG1487|consen 329 VWG----------SSVKHNP--QRVGKEHVLEDEDVVQIV 356 (358)
T ss_pred Eec----------cccCcCh--hhcchhheeccchhhhhc
Confidence 999 8899987 999999999999999874
No 13
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.95 E-value=4.3e-27 Score=225.39 Aligned_cols=228 Identities=29% Similarity=0.443 Sum_probs=165.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEe----CCcchhhhhhh-----ccCCCCccccchHhhHhh
Q 017295 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNI----PDERFEWLCQL-----FKPKSAVPAFLEIHDIAG 97 (374)
Q Consensus 27 vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~----~g~~~~~l~~~-----~~~~~~~~~~~~v~D~~g 97 (374)
+||||.||+|||||||+||+..+.+++|||||++|+.|.+.+ ++.+++.++.. ..+.+.++ ++++|++|
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~--i~l~D~aG 78 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVP--VELIDVAG 78 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcce--EEEEECCC
Confidence 589999999999999999999999999999999999999986 45555555432 11122233 89999999
Q ss_pred hhccccCCCC---C-----CCCCceeEecC---------------CCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 017295 98 LVRGAHEGQG---A-----FEDPDIIHVDD---------------SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMK 154 (374)
Q Consensus 98 l~~~~~~~~~---~-----~~~~~il~l~~---------------~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~ 154 (374)
+..+++.+.+ . ...+.++|+.+ ..||.+++.++.+++..+|...+++.+..+.+..+
T Consensus 79 lv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~ 158 (318)
T cd01899 79 LVPGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKAD 158 (318)
T ss_pred CCCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9988876655 1 12344555544 35899999999999999999999999999986654
Q ss_pred ccCc-c--chHHHHHHH----HHHHHHHhCCC-ceeccCCChhHHHHHHhccccccCCEEEEEcCCCccccccccccHHH
Q 017295 155 RSND-K--QLKIEHELC----QRVKAWLQDGK-DVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPK 226 (374)
Q Consensus 155 ~~~~-H--~~~~~~~~~----d~v~~~L~~G~-iv~~~~~~~~~~~~l~~~~~~~~kP~i~v~Nk~d~d~~~~~~~~~~~ 226 (374)
.++. . ........+ ++|+.+|++|. ......|++.+++.+..+.+++.||+|+|+||+|. .. .++..+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl--~~-~~~~~~~ 235 (318)
T cd01899 159 AEKTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADI--PD-AENNISK 235 (318)
T ss_pred cCCccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHc--cC-hHHHHHH
Confidence 3322 1 112222333 77778887776 44556788999999999999999999999999973 22 2233333
Q ss_pred HHHHHHhhCCCeEEEeeHHHHHHhcCCChhHHHHHH
Q 017295 227 IHAWVQEHGGEQIIPFSCALERNLADMPPDEAAKYC 262 (374)
Q Consensus 227 l~~~~~~~~~~~~i~vSa~~e~~l~~l~~~~~~~~~ 262 (374)
+.. .....++|++||+.|.++.+|..++..+|+
T Consensus 236 l~~---~~~~~~iI~iSA~~e~~L~~L~~~~i~~~l 268 (318)
T cd01899 236 LRL---KYPDEIVVPTSAEAELALRRAAKQGLIKYD 268 (318)
T ss_pred HHh---hCCCCeEEEEeCcccccHHHHHHhhHHHhC
Confidence 332 223567999999999988777544455554
No 14
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.88 E-value=7.1e-24 Score=195.27 Aligned_cols=162 Identities=22% Similarity=0.296 Sum_probs=135.5
Q ss_pred ccccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhh-------hcc
Q 017295 13 AERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFK 81 (374)
Q Consensus 13 ~~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~-------~~~ 81 (374)
+++.+|+++++. ..++|+|||||||||||++|+|. +.|.+|.|.++|+++..+.. .|.
T Consensus 13 ~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~-----------l~p~~G~V~l~g~~i~~~~~kelAk~ia~v 81 (258)
T COG1120 13 GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGL-----------LKPKSGEVLLDGKDIASLSPKELAKKLAYV 81 (258)
T ss_pred CCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhcc-----------CCCCCCEEEECCCchhhcCHHHHhhhEEEe
Confidence 467899999875 45999999999999999999999 88999999999999876443 589
Q ss_pred CCCC-ccccchHhhHhhhhccccCCCC---------------------CCCCCceeEecC------------CCCCchhH
Q 017295 82 PKSA-VPAFLEIHDIAGLVRGAHEGQG---------------------AFEDPDIIHVDD------------SVDPVRDL 127 (374)
Q Consensus 82 ~~~~-~~~~~~v~D~~gl~~~~~~~~~---------------------~~~~~~il~l~~------------~~dP~~~l 127 (374)
||.. .+..++|.|.+.+++..+.+.. .+.+..+-.+++ +.+| ++
T Consensus 82 pQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~--~i 159 (258)
T COG1120 82 PQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQET--PI 159 (258)
T ss_pred ccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCC--CE
Confidence 9986 7788999999999987765422 223333444444 6789 99
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccCCCh
Q 017295 128 EVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWKA 188 (374)
Q Consensus 128 ~ilde~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~~~ 188 (374)
+++|||++.+|+.+....++.++++.++ +.+ ||++.+.++||++ .+|++|+++..|.+.+
T Consensus 160 LLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~-i~lk~G~i~a~G~p~e 225 (258)
T COG1120 160 LLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHL-ILLKDGKIVAQGTPEE 225 (258)
T ss_pred EEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEE-EEEECCeEEeecCcch
Confidence 9999999999999999999999998855 444 9999999999999 9999999999887643
No 15
>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF. The TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=99.87 E-value=1.6e-22 Score=152.81 Aligned_cols=65 Identities=31% Similarity=0.431 Sum_probs=60.2
Q ss_pred ceeeeccC-----------CCCeeeEEecCCCChhHhhhhcchhhhcceEEEEEecchhhhhcCChHHHhhcCcccccCC
Q 017295 284 LIYFFTAG-----------PDEVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVMKFDDLKELGSEPAVKAAGKYKQEGK 352 (374)
Q Consensus 284 li~~ft~~-----------~~e~~~~~i~~gsta~~~a~~IHsd~~~~f~~A~v~~~~d~~~~~~~~~~~~~g~~~~~g~ 352 (374)
||++||+. +++.+||++++|+||+|+|++||+||.++|++|+||+ .|++|+
T Consensus 1 li~VYpv~~~~~~~~~~~g~d~~~~~~l~~g~tv~d~a~~IH~d~~~~F~~A~v~~------------------~~~vg~ 62 (76)
T cd04938 1 LIPVYPVKNIHTFTNGSGGNVFRDCVLVKKGTTVGDVARKIHGDLEKGFIEAVGGR------------------RRLEGK 62 (76)
T ss_pred CEEEEEcCCCccccCcCCCCccceeEEEcCCCCHHHHHHHHhHHHHhccEEEEEcc------------------CEEECC
Confidence 68999962 5788999999999999999999999999999999997 499999
Q ss_pred cceecCCCEEEEEe
Q 017295 353 TYVVQDGDIIFFKF 366 (374)
Q Consensus 353 dy~~~dgDii~~~~ 366 (374)
||+|+|||||+|.+
T Consensus 63 d~~l~d~DVv~i~~ 76 (76)
T cd04938 63 DVILGKNDILKFKT 76 (76)
T ss_pred CEEecCCCEEEEEC
Confidence 99999999999975
No 16
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.85 E-value=1.6e-21 Score=180.01 Aligned_cols=215 Identities=20% Similarity=0.296 Sum_probs=138.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhccccCC
Q 017295 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEG 105 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~~~~~~ 105 (374)
+++|+|+||||||||||+|+|....+++|||||.+|..|.+.++|.+ ++++|+||+......+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~-----------------i~l~DtpG~~~~~~~~ 64 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAK-----------------IQLLDLPGIIEGAADG 64 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeE-----------------EEEEECCCcccccccc
Confidence 58999999999999999999998888999999999999999988754 6778888876544222
Q ss_pred CC-------CCC-CCceeEecCCCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHH-HccCcc---chHHHHHHHHHHHH
Q 017295 106 QG-------AFE-DPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSM-KRSNDK---QLKIEHELCQRVKA 173 (374)
Q Consensus 106 ~~-------~~~-~~~il~l~~~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~-~~~~~H---~~~~~~~~~d~v~~ 173 (374)
.+ .+. .+.++++.++.++.+....+.+.+...++. +.+....+.-.. ..++.. .......-.+.|+.
T Consensus 65 ~~~~~~~l~~~~~ad~il~V~D~t~~~~~~~~~~~~l~~~gi~-l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~ 143 (233)
T cd01896 65 KGRGRQVIAVARTADLILMVLDATKPEGHREILERELEGVGIR-LNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKA 143 (233)
T ss_pred hhHHHHHHHhhccCCEEEEEecCCcchhHHHHHHHHHHHcCce-ecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHH
Confidence 11 222 355777888778866677776666665552 111111111000 011110 00000011244445
Q ss_pred HHhCCCce-----eccCCChhHHHHHHhccccccCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHH
Q 017295 174 WLQDGKDV-----RLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALER 248 (374)
Q Consensus 174 ~L~~G~iv-----~~~~~~~~~~~~l~~~~~~~~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~ 248 (374)
+|++.++. ..++.+.+++...- ..-..++|+++|+||+|.. . .+.++.+.. ...++++||+.+.
T Consensus 144 ~l~~~~i~~~~v~~~~~~~~~~~~~~~-~~~~~y~p~iiV~NK~Dl~--~-----~~~~~~~~~---~~~~~~~SA~~g~ 212 (233)
T cd01896 144 ILREYKIHNADVLIREDITVDDLIDVI-EGNRVYIPCLYVYNKIDLI--S-----IEELDLLAR---QPNSVVISAEKGL 212 (233)
T ss_pred HHHHhCeeeEEEEEccCCCHHHHHHHH-hCCceEeeEEEEEECccCC--C-----HHHHHHHhc---CCCEEEEcCCCCC
Confidence 66666553 24567777754322 2335689999999999742 1 123333332 2358999999875
Q ss_pred HhcCCChhHHHHHHHhccccccHHHHHHHHHhhcCceeeecc
Q 017295 249 NLADMPPDEAAKYCEENKVQSALPKIIKTGFSAINLIYFFTA 290 (374)
Q Consensus 249 ~l~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~L~li~~ft~ 290 (374)
+ ++++.+.+++.|++||+||+
T Consensus 213 g---------------------i~~l~~~i~~~L~~irvy~k 233 (233)
T cd01896 213 N---------------------LDELKERIWDKLGLIRVYTK 233 (233)
T ss_pred C---------------------HHHHHHHHHHHhCcEEEecC
Confidence 4 66888999999999999996
No 17
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.85 E-value=7.1e-22 Score=174.72 Aligned_cols=159 Identities=18% Similarity=0.257 Sum_probs=127.9
Q ss_pred ccccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhh------hhh--hc
Q 017295 13 AERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW------LCQ--LF 80 (374)
Q Consensus 13 ~~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~------l~~--~~ 80 (374)
++..||++++.. ..++||||+|||||||++||.++ ..|++|.|.++|..+.. +.+ ++
T Consensus 13 g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~L-----------E~~~~G~I~i~g~~~~~~~~~~~~R~~vGm 81 (240)
T COG1126 13 GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGL-----------EEPDSGSITVDGEDVGDKKDILKLRRKVGM 81 (240)
T ss_pred CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCC-----------cCCCCceEEECCEeccchhhHHHHHHhcCe
Confidence 467899999864 55999999999999999999999 77999999999975432 222 57
Q ss_pred cCCCC-ccccchHhhHhhhhccccCCCC---------------CC---CCCceeEecC------------CCCCchhHHH
Q 017295 81 KPKSA-VPAFLEIHDIAGLVRGAHEGQG---------------AF---EDPDIIHVDD------------SVDPVRDLEV 129 (374)
Q Consensus 81 ~~~~~-~~~~~~v~D~~gl~~~~~~~~~---------------~~---~~~~il~l~~------------~~dP~~~l~i 129 (374)
+.|.. +++++++.|+.-+.+-.-.+.. .+ .+.....+++ +.+| ++.+
T Consensus 82 VFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P--~vmL 159 (240)
T COG1126 82 VFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDP--KVML 159 (240)
T ss_pred ecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCC--CEEe
Confidence 77776 8899999999887543333322 11 1122333444 6799 9999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 130 ISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 130 lde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+|||++.+|++.+...++.+..+++.|.| |++..+.+++||| .+|++|+++..++
T Consensus 160 FDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~Vadrv-iFmd~G~iie~g~ 219 (240)
T COG1126 160 FDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRV-IFMDQGKIIEEGP 219 (240)
T ss_pred ecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheE-EEeeCCEEEEecC
Confidence 99999999999999999999999988866 9999999999999 9999999987763
No 18
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.84 E-value=1.7e-21 Score=174.76 Aligned_cols=160 Identities=16% Similarity=0.236 Sum_probs=128.2
Q ss_pred ccccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh---hhccCCCC
Q 017295 13 AERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC---QLFKPKSA 85 (374)
Q Consensus 13 ~~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~---~~~~~~~~ 85 (374)
+++.+++++++. ...|++|+|||||||+|++|.|+ ++|++|.|.++|.++.+.. .+|.|...
T Consensus 13 g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILgl-----------le~~~G~I~~~g~~~~~~~~~rIGyLPEER 81 (300)
T COG4152 13 GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGL-----------LEPTEGEITWNGGPLSQEIKNRIGYLPEER 81 (300)
T ss_pred CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhcc-----------CCccCceEEEcCcchhhhhhhhcccChhhh
Confidence 467889998875 45999999999999999999999 9999999999998876533 36888876
Q ss_pred -ccccchHhhHhhhhccccCCCC-----------------CCCCCceeEec------------CCCCCchhHHHHHHHHH
Q 017295 86 -VPAFLEIHDIAGLVRGAHEGQG-----------------AFEDPDIIHVD------------DSVDPVRDLEVISAELR 135 (374)
Q Consensus 86 -~~~~~~v~D~~gl~~~~~~~~~-----------------~~~~~~il~l~------------~~~dP~~~l~ilde~l~ 135 (374)
+++.+++.|.+-+......-.. ....+.+-.++ -.++| ++.++|||++
T Consensus 82 GLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHeP--eLlILDEPFS 159 (300)
T COG4152 82 GLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEP--ELLILDEPFS 159 (300)
T ss_pred ccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCC--CEEEecCCcc
Confidence 8899999998877544332111 00111111111 15789 9999999999
Q ss_pred hhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 136 LKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 136 ~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
++|+-..+-..+.+.++..+|.+ |.++.++++||++ .+|+.|+.+.+|+.
T Consensus 160 GLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~l-lmL~kG~~V~~G~v 214 (300)
T COG4152 160 GLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRL-LMLKKGQTVLYGTV 214 (300)
T ss_pred CCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhh-heecCCceEEeccH
Confidence 99999999999999988878876 9999999999999 99999999988764
No 19
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.83 E-value=7.7e-21 Score=176.00 Aligned_cols=82 Identities=33% Similarity=0.581 Sum_probs=68.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhccccCC
Q 017295 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEG 105 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~~~~~~ 105 (374)
.+||||.||||||||||+|+..++.|++|||||+.|.-|.+.+++. .+++|.|+||+++++|..
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf----------------~q~tVADiPGiI~GAh~n 261 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDF----------------SQITVADIPGIIEGAHMN 261 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeecccc----------------ceeEeccCcccccccccc
Confidence 3999999999999999999999999999999999999999988873 348999999999999976
Q ss_pred CC--------CCCCCceeEecCCCCC
Q 017295 106 QG--------AFEDPDIIHVDDSVDP 123 (374)
Q Consensus 106 ~~--------~~~~~~il~l~~~~dP 123 (374)
.+ .-.+..++.+.|...|
T Consensus 262 kGlG~~FLrHiER~~~l~fVvD~s~~ 287 (366)
T KOG1489|consen 262 KGLGYKFLRHIERCKGLLFVVDLSGK 287 (366)
T ss_pred CcccHHHHHHHHhhceEEEEEECCCc
Confidence 55 2234556666665544
No 20
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.82 E-value=3.8e-20 Score=173.43 Aligned_cols=78 Identities=37% Similarity=0.631 Sum_probs=67.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhccccCCC
Q 017295 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQ 106 (374)
Q Consensus 27 vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~~~~~~~ 106 (374)
|||||.||||||||+++++..++.|++|||||+.|+-|.|.+.+.+ .+.+.|+||++.++|.|.
T Consensus 162 VGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~----------------sfv~ADIPGLIEGAs~G~ 225 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGE----------------SFVVADIPGLIEGASEGV 225 (369)
T ss_pred cccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCC----------------cEEEecCcccccccccCC
Confidence 9999999999999999999999999999999999999999985432 378899999999999987
Q ss_pred C--------CCCCCceeEecCC
Q 017295 107 G--------AFEDPDIIHVDDS 120 (374)
Q Consensus 107 ~--------~~~~~~il~l~~~ 120 (374)
+ .-++..++|+.|+
T Consensus 226 GLG~~FLrHIERt~vL~hviD~ 247 (369)
T COG0536 226 GLGLRFLRHIERTRVLLHVIDL 247 (369)
T ss_pred CccHHHHHHHHhhheeEEEEec
Confidence 6 2245667777763
No 21
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.82 E-value=8.7e-21 Score=182.17 Aligned_cols=161 Identities=12% Similarity=0.206 Sum_probs=129.8
Q ss_pred ccccccccccCCc----eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhh-----hccCC
Q 017295 13 AERPILGRFSSHL----KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-----LFKPK 83 (374)
Q Consensus 13 ~~~~vL~~i~~~~----~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~-----~~~~~ 83 (374)
++..+|++++..+ .++|+||+||||||||++|+|. ..|++|.|.++|+++..++. .++.|
T Consensus 16 g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGf-----------e~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ 84 (352)
T COG3842 16 GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGF-----------EQPSSGEILLDGEDITDVPPEKRPIGMVFQ 84 (352)
T ss_pred CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEECCCCChhhcccceeec
Confidence 3578899888754 4999999999999999999999 78999999999999877664 68889
Q ss_pred CC-ccccchHhhHhhhhccccCCCC------------------CCCCCceeEecC------------CCCCchhHHHHHH
Q 017295 84 SA-VPAFLEIHDIAGLVRGAHEGQG------------------AFEDPDIIHVDD------------SVDPVRDLEVISA 132 (374)
Q Consensus 84 ~~-~~~~~~v~D~~gl~~~~~~~~~------------------~~~~~~il~l~~------------~~dP~~~l~ilde 132 (374)
++ ++++++|.|+++++........ .+.......+++ +.+| +++++||
T Consensus 85 ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P--~vLLLDE 162 (352)
T COG3842 85 SYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEP--KVLLLDE 162 (352)
T ss_pred CcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCc--chhhhcC
Confidence 88 8999999999998755221111 222223333333 5688 9999999
Q ss_pred HHHhhcHHHHHHHHHHHHHHHHccC-c-----cchHHHHHHHHHHHHHHhCCCceeccCCC
Q 017295 133 ELRLKDIEFMERRIEDVEKSMKRSN-D-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 187 (374)
Q Consensus 133 ~l~~~D~~~~~~~~~~i~~~~~~~~-~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~~ 187 (374)
|++.+|...+++....++++.++.+ | ||.++++.++||| .+|++|++...+++.
T Consensus 163 PlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI-~Vm~~G~I~Q~gtP~ 222 (352)
T COG3842 163 PLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRI-AVMNDGRIEQVGTPE 222 (352)
T ss_pred cccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccce-EEccCCceeecCCHH
Confidence 9999999999988888888776543 2 9999999999999 999999998777553
No 22
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.82 E-value=1e-21 Score=176.97 Aligned_cols=162 Identities=18% Similarity=0.189 Sum_probs=124.3
Q ss_pred ccccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhh--------hc
Q 017295 13 AERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ--------LF 80 (374)
Q Consensus 13 ~~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~--------~~ 80 (374)
++-.+++++++. ..+|||||||||||||||+|||. ++|++|+|.+.|+++..++. .-
T Consensus 15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~-----------~~P~~G~v~~~G~~it~l~p~~iar~Gi~R 83 (250)
T COG0411 15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGF-----------YKPSSGTVIFRGRDITGLPPHRIARLGIAR 83 (250)
T ss_pred CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeeccc-----------ccCCCceEEECCcccCCCCHHHHHhcccee
Confidence 456788888864 45999999999999999999999 99999999999998876543 12
Q ss_pred cCCCC-ccccchHhhHhhhhccccCC-------------CC----------------CCCCCceeEecC-----------
Q 017295 81 KPKSA-VPAFLEIHDIAGLVRGAHEG-------------QG----------------AFEDPDIIHVDD----------- 119 (374)
Q Consensus 81 ~~~~~-~~~~~~v~D~~gl~~~~~~~-------------~~----------------~~~~~~il~l~~----------- 119 (374)
..|.. +++.+++.|++.+....+.+ +. ...+...-.++.
T Consensus 84 TFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArA 163 (250)
T COG0411 84 TFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARA 163 (250)
T ss_pred ecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHH
Confidence 34444 67789999998876432211 00 000111111111
Q ss_pred -CCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccC-c-----cchHHHHHHHHHHHHHHhCCCceeccCCCh
Q 017295 120 -SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSN-D-----KQLKIEHELCQRVKAWLQDGKDVRLGDWKA 188 (374)
Q Consensus 120 -~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~-~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~~~ 188 (374)
+.+| .++++|||.+++.+.......+.|.++.+.++ + |++..+..+|||| .+|+.|+++.+|++.+
T Consensus 164 La~~P--~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri-~Vl~~G~~IAeG~P~e 236 (250)
T COG0411 164 LATQP--KLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRI-VVLNYGEVIAEGTPEE 236 (250)
T ss_pred HhcCC--CEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEE-EeccCCcCcccCCHHH
Confidence 6789 99999999999999999999999999886543 3 9999999999999 9999999999887653
No 23
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.81 E-value=1.4e-20 Score=165.78 Aligned_cols=162 Identities=15% Similarity=0.250 Sum_probs=128.6
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhh-------hccC
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKP 82 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~-------~~~~ 82 (374)
++.+|++++. |+..+|+||||||||||+++|+|. +.|++|.+.++|.++..... ...|
T Consensus 13 Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGe-----------l~p~~G~v~~~g~~l~~~~~~~lA~~raVlp 81 (259)
T COG4559 13 GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGE-----------LSPDSGEVTLNGVPLNSWPPEELARHRAVLP 81 (259)
T ss_pred cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCc-----------cCCCCCeEeeCCcChhhCCHHHHHHHhhhcc
Confidence 6788999886 456999999999999999999999 88999999999998765332 4678
Q ss_pred CCC-ccccchHhhHhhhhccccCC--CC-----------------CCCCCceeEecC----------------CCCCchh
Q 017295 83 KSA-VPAFLEIHDIAGLVRGAHEG--QG-----------------AFEDPDIIHVDD----------------SVDPVRD 126 (374)
Q Consensus 83 ~~~-~~~~~~v~D~~gl~~~~~~~--~~-----------------~~~~~~il~l~~----------------~~dP~~~ 126 (374)
|.. +-+.+++.|++.+++-.+.. .. .|.......+++ ..-|...
T Consensus 82 Q~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r 161 (259)
T COG4559 82 QNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGR 161 (259)
T ss_pred cCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCc
Confidence 876 55668999999998766532 20 233333344444 1123336
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCCC
Q 017295 127 LEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 187 (374)
Q Consensus 127 l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~~ 187 (374)
++++|||++.+|+.+....+...+.+.++++. ||++....+||++ .+|.+|+++..+.+.
T Consensus 162 ~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDri-vll~~Grv~a~g~p~ 226 (259)
T COG4559 162 WLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRI-VLLHQGRVIASGSPQ 226 (259)
T ss_pred eEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhhee-eeeeCCeEeecCCHH
Confidence 89999999999999999999999999987765 9999999999999 999999999877543
No 24
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.81 E-value=6e-21 Score=175.11 Aligned_cols=156 Identities=19% Similarity=0.240 Sum_probs=125.5
Q ss_pred cccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh----hhhccCCCC-c
Q 017295 16 PILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----CQLFKPKSA-V 86 (374)
Q Consensus 16 ~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l----~~~~~~~~~-~ 86 (374)
+||+++++ |..++||||||||||||+++|+|+ ++|.+|.|.+.|.+.... ...|+||+. +
T Consensus 18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGl-----------l~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~ 86 (254)
T COG1121 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGL-----------LKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSV 86 (254)
T ss_pred eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CcCCcceEEEccccccccccCCeEEEcCccccc
Confidence 68999887 455999999999999999999999 899999999999875443 347999965 2
Q ss_pred --cccchHhhHhhhhccccCCCC---------------------CCCCCceeEecC------------CCCCchhHHHHH
Q 017295 87 --PAFLEIHDIAGLVRGAHEGQG---------------------AFEDPDIIHVDD------------SVDPVRDLEVIS 131 (374)
Q Consensus 87 --~~~~~v~D~~gl~~~~~~~~~---------------------~~~~~~il~l~~------------~~dP~~~l~ild 131 (374)
...++|.|++.+++....+.- .+.+..+-.+++ +.+| +++++|
T Consensus 87 d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p--~lllLD 164 (254)
T COG1121 87 DRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNP--DLLLLD 164 (254)
T ss_pred CCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCC--CEEEec
Confidence 344799999999755443311 455666777777 7899 999999
Q ss_pred HHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 132 AELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 132 e~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
||+.+.|+.....+++.+.++.+++++ ||+..+...+|+| ..|+ ++++..|+.
T Consensus 165 EP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~v-i~Ln-~~~~~~G~~ 222 (254)
T COG1121 165 EPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRV-ICLN-RHLIASGPP 222 (254)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEE-EEEc-CeeEeccCh
Confidence 999999999999999999999877766 9999999999999 6664 445555543
No 25
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.81 E-value=1.3e-19 Score=181.79 Aligned_cols=85 Identities=34% Similarity=0.614 Sum_probs=69.2
Q ss_pred ccCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhc
Q 017295 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (374)
Q Consensus 21 i~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~ 100 (374)
+..-..|+|||.||||||||||+|++.++.+++|||||+.|+.|.+.+.+.+ +++.|+||++.
T Consensus 156 Lk~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~-----------------f~laDtPGlie 218 (500)
T PRK12296 156 LKSVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTR-----------------FTVADVPGLIP 218 (500)
T ss_pred ecccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeE-----------------EEEEECCCCcc
Confidence 3344559999999999999999999999999999999999999999987644 78999999987
Q ss_pred cccCCCC--------CCCCCceeEecCCCC
Q 017295 101 GAHEGQG--------AFEDPDIIHVDDSVD 122 (374)
Q Consensus 101 ~~~~~~~--------~~~~~~il~l~~~~d 122 (374)
+++.+.+ .-.++.++++.|+.+
T Consensus 219 gas~g~gLg~~fLrhieradvLv~VVD~s~ 248 (500)
T PRK12296 219 GASEGKGLGLDFLRHIERCAVLVHVVDCAT 248 (500)
T ss_pred ccchhhHHHHHHHHHHHhcCEEEEEECCcc
Confidence 7765543 223567788877643
No 26
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.80 E-value=6e-21 Score=181.70 Aligned_cols=158 Identities=20% Similarity=0.260 Sum_probs=127.9
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhh----h--hhhccCC
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW----L--CQLFKPK 83 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~----l--~~~~~~~ 83 (374)
.+.+|+++++. ..+||+||||||||||||+|+|. +.|++|.|.++|.+... . ..+|.|+
T Consensus 17 ~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl-----------~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~ 85 (293)
T COG1131 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGL-----------LKPTSGEILVLGYDVVKEPAKVRRRIGYVPQ 85 (293)
T ss_pred CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCC-----------cCCCceEEEEcCEeCccCHHHHHhheEEEcc
Confidence 47899999874 45999999999999999999999 88999999999977543 1 1268888
Q ss_pred CC-ccccchHhhHhhhhccccCCCC--------------CCC---CCceeEecC------------CCCCchhHHHHHHH
Q 017295 84 SA-VPAFLEIHDIAGLVRGAHEGQG--------------AFE---DPDIIHVDD------------SVDPVRDLEVISAE 133 (374)
Q Consensus 84 ~~-~~~~~~v~D~~gl~~~~~~~~~--------------~~~---~~~il~l~~------------~~dP~~~l~ilde~ 133 (374)
.. +++.+++.|++.+....+.... .+. +..+-.++. +.+| +++++|||
T Consensus 86 ~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P--~lliLDEP 163 (293)
T COG1131 86 EPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDP--ELLILDEP 163 (293)
T ss_pred CCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCC--CEEEECCC
Confidence 87 7889999999988765554320 111 111222332 6799 99999999
Q ss_pred HHhhcHHHHHHHHHHHHHHHHccC-c-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 134 LRLKDIEFMERRIEDVEKSMKRSN-D-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 134 l~~~D~~~~~~~~~~i~~~~~~~~-~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
++++|+.....+++.+++++++++ + |.++++..+||+| .+|++|+++..++
T Consensus 164 t~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v-~il~~G~~~~~g~ 220 (293)
T COG1131 164 TSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRV-IILNDGKIIAEGT 220 (293)
T ss_pred CcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEE-EEEeCCEEEEeCC
Confidence 999999999999999999998773 4 9999999999999 9999999998873
No 27
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.80 E-value=1e-21 Score=171.39 Aligned_cols=161 Identities=18% Similarity=0.261 Sum_probs=130.0
Q ss_pred ccccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhh--------hc
Q 017295 13 AERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ--------LF 80 (374)
Q Consensus 13 ~~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~--------~~ 80 (374)
+.+.|++++++ |+.|||+|||||||||.|.+++|+ ..|++|.|.++|.++..++. .|
T Consensus 15 ~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Gl-----------v~~d~G~i~ld~~diT~lPm~~RArlGigY 83 (243)
T COG1137 15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGL-----------VRPDSGKILLDDEDITKLPMHKRARLGIGY 83 (243)
T ss_pred CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEE-----------EecCCceEEECCcccccCChHHHhhcCccc
Confidence 46788998876 556999999999999999999999 89999999999999876543 69
Q ss_pred cCCCC-ccccchHhhHhhhhccccCCCC-------------------CCCCCceeEecC------------CCCCchhHH
Q 017295 81 KPKSA-VPAFLEIHDIAGLVRGAHEGQG-------------------AFEDPDIIHVDD------------SVDPVRDLE 128 (374)
Q Consensus 81 ~~~~~-~~~~~~v~D~~gl~~~~~~~~~-------------------~~~~~~il~l~~------------~~dP~~~l~ 128 (374)
.||+. ++..++|.|+...+........ ...+..-..+++ +.+| .+.
T Consensus 84 LpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P--~fi 161 (243)
T COG1137 84 LPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANP--KFI 161 (243)
T ss_pred ccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCC--CEE
Confidence 99997 8888999999887543322110 111222233343 6789 999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCCC
Q 017295 129 VISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 187 (374)
Q Consensus 129 ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~~ 187 (374)
++|||+++.|+-.+..+...+..+..++-. |+..+.+.+|||+ .++.+|+++..|.++
T Consensus 162 LLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRa-YIi~~G~vla~G~p~ 224 (243)
T COG1137 162 LLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRA-YIISDGKVLAEGSPE 224 (243)
T ss_pred EecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheE-EEEecCeEEecCCHH
Confidence 999999999999999999999888877643 9999999999999 999999999888654
No 28
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.80 E-value=1.9e-20 Score=169.07 Aligned_cols=159 Identities=15% Similarity=0.204 Sum_probs=129.4
Q ss_pred cccccccccCCc----eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-------hhccC
Q 017295 14 ERPILGRFSSHL----KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKP 82 (374)
Q Consensus 14 ~~~vL~~i~~~~----~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-------~~~~~ 82 (374)
.+.+++++++.+ .+++|||+||||||++++|.++ ++|++|.|.++|+++.... .+|.-
T Consensus 13 ~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrL-----------iept~G~I~i~g~~i~~~d~~~LRr~IGYvi 81 (309)
T COG1125 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRL-----------IEPTSGEILIDGEDISDLDPVELRRKIGYVI 81 (309)
T ss_pred CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcc-----------cCCCCceEEECCeecccCCHHHHHHhhhhhh
Confidence 567888888654 4999999999999999999999 9999999999999876532 26887
Q ss_pred CCC-ccccchHhhHhhhhccccCCCC-------------------CCCCCceeEecC------------CCCCchhHHHH
Q 017295 83 KSA-VPAFLEIHDIAGLVRGAHEGQG-------------------AFEDPDIIHVDD------------SVDPVRDLEVI 130 (374)
Q Consensus 83 ~~~-~~~~~~v~D~~gl~~~~~~~~~-------------------~~~~~~il~l~~------------~~dP~~~l~il 130 (374)
|.. +++++++.++..+++...++.. .|.+...-.+++ +.+| .++++
T Consensus 82 QqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP--~ilLM 159 (309)
T COG1125 82 QQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADP--PILLM 159 (309)
T ss_pred hhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCC--CeEee
Confidence 776 8899999999998876554432 233333334444 6799 99999
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 131 SAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 131 de~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
|||+..+|+-.+.+..+.+.++.++ +.| ||++++..++||+ .+|++|+++..+.+
T Consensus 160 DEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri-~vm~~G~i~Q~~~P 220 (309)
T COG1125 160 DEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRI-AVMDAGEIVQYDTP 220 (309)
T ss_pred cCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceE-EEecCCeEEEeCCH
Confidence 9999999999999998888877765 344 9999999999999 99999999876543
No 29
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.79 E-value=3.8e-20 Score=171.34 Aligned_cols=160 Identities=17% Similarity=0.198 Sum_probs=124.8
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCc---chhhhh-----hhcc
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDE---RFEWLC-----QLFK 81 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~---~~~~l~-----~~~~ 81 (374)
...++++++. |..++|+||||||||||+++|+|+ ..|+.|.|.++|+ +...+. .+|.
T Consensus 14 ~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGL-----------e~p~~G~I~~~~~~l~D~~~~~~~~R~VGfv 82 (345)
T COG1118 14 AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGL-----------ETPDAGRIRLNGRVLFDVSNLAVRDRKVGFV 82 (345)
T ss_pred cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCc-----------CCCCCceEEECCEeccchhccchhhcceeEE
Confidence 4456666655 555999999999999999999999 8899999999998 443322 2677
Q ss_pred CCCC-ccccchHhhHhhhhccccCCCC-------------------CCCCCceeEecC------------CCCCchhHHH
Q 017295 82 PKSA-VPAFLEIHDIAGLVRGAHEGQG-------------------AFEDPDIIHVDD------------SVDPVRDLEV 129 (374)
Q Consensus 82 ~~~~-~~~~~~v~D~~gl~~~~~~~~~-------------------~~~~~~il~l~~------------~~dP~~~l~i 129 (374)
.|.+ ++++|+|.|++.++........ .+.+.....+++ +.+| .+++
T Consensus 83 FQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP--~vLL 160 (345)
T COG1118 83 FQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEP--KVLL 160 (345)
T ss_pred EechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCC--CeEe
Confidence 8887 7889999999998753321110 223333444444 6789 9999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccCCC
Q 017295 130 ISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 187 (374)
Q Consensus 130 lde~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~~ 187 (374)
+|||+..+|..........+.+...+ +.+ ||.+++.+++|+| .+|++|+|...++.+
T Consensus 161 LDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrv-vvl~~G~Ieqvg~p~ 223 (345)
T COG1118 161 LDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRV-VVLNQGRIEQVGPPD 223 (345)
T ss_pred ecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceE-EEecCCeeeeeCCHH
Confidence 99999999999988888888887766 333 9999999999999 999999998776543
No 30
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.79 E-value=2.4e-20 Score=178.18 Aligned_cols=157 Identities=14% Similarity=0.150 Sum_probs=125.7
Q ss_pred ccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhh-----hccCCCC-c
Q 017295 17 ILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-----LFKPKSA-V 86 (374)
Q Consensus 17 vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~-----~~~~~~~-~ 86 (374)
+|++++.. ..++|+||||||||||||+|+|+ .+|++|.|.++|.++..+.. .+++|.+ +
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGL-----------e~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yAL 86 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGL-----------EEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYAL 86 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEECCCCChhHCCEEEEeCCccc
Confidence 78877764 55999999999999999999999 88999999999999877553 5788887 8
Q ss_pred cccchHhhHhhhhccccCCCC-----------------CCCCCceeEecC------------CCCCchhHHHHHHHHHhh
Q 017295 87 PAFLEIHDIAGLVRGAHEGQG-----------------AFEDPDIIHVDD------------SVDPVRDLEVISAELRLK 137 (374)
Q Consensus 87 ~~~~~v~D~~gl~~~~~~~~~-----------------~~~~~~il~l~~------------~~dP~~~l~ilde~l~~~ 137 (374)
+++|+|.|+.++.....+-.. .+.+.....+++ ..+| ++.++|||++.+
T Consensus 87 yPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P--~v~L~DEPlSnL 164 (338)
T COG3839 87 YPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKP--KVFLLDEPLSNL 164 (338)
T ss_pred cCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCC--CEEEecCchhHh
Confidence 999999999998644332111 112222333443 5689 999999999999
Q ss_pred cHHHHHHHHHHHHHHHHccC-c-----cchHHHHHHHHHHHHHHhCCCceeccCCC
Q 017295 138 DIEFMERRIEDVEKSMKRSN-D-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 187 (374)
Q Consensus 138 D~~~~~~~~~~i~~~~~~~~-~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~~ 187 (374)
|..........+.++.++.+ | ||..++..++|++ .+|++|++...+.+.
T Consensus 165 Da~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri-~Vm~~G~i~Q~g~p~ 219 (338)
T COG3839 165 DAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRI-VVMNDGRIQQVGTPL 219 (338)
T ss_pred hHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEE-EEEeCCeeeecCChH
Confidence 99999999999988776543 2 9999999999999 999999998776543
No 31
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.78 E-value=3.1e-20 Score=166.70 Aligned_cols=161 Identities=20% Similarity=0.201 Sum_probs=127.3
Q ss_pred ccccccccccCCc----eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhh----------
Q 017295 13 AERPILGRFSSHL----KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ---------- 78 (374)
Q Consensus 13 ~~~~vL~~i~~~~----~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~---------- 78 (374)
+++.||+++++.+ ..+|+|++|+|||||+++|.|+ +.|++|+|.+.|.++..+++
T Consensus 19 G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gl-----------l~P~~GeI~i~G~~i~~ls~~~~~~ir~r~ 87 (263)
T COG1127 19 GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGL-----------LRPDKGEILIDGEDIPQLSEEELYEIRKRM 87 (263)
T ss_pred CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhcc-----------CCCCCCeEEEcCcchhccCHHHHHHHHhhe
Confidence 5789999998754 5999999999999999999999 89999999999998866543
Q ss_pred hccCCCC-ccccchHhhHhhhhccccCCCC---------------CCC----CCceeEecC------------CCCCchh
Q 017295 79 LFKPKSA-VPAFLEIHDIAGLVRGAHEGQG---------------AFE----DPDIIHVDD------------SVDPVRD 126 (374)
Q Consensus 79 ~~~~~~~-~~~~~~v~D~~gl~~~~~~~~~---------------~~~----~~~il~l~~------------~~dP~~~ 126 (374)
++..|.. ++..++|.|++++.-..+.... .+. +.....+++ +.|| +
T Consensus 88 GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdP--e 165 (263)
T COG1127 88 GVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDP--E 165 (263)
T ss_pred eEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCC--C
Confidence 3556665 7888999999998543333322 110 111122333 6799 9
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHccC-c-----cchHHHHHHHHHHHHHHhCCCceeccCCC
Q 017295 127 LEVISAELRLKDIEFMERRIEDVEKSMKRSN-D-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 187 (374)
Q Consensus 127 l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~-~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~~ 187 (374)
++++|||++++|+-....+-+.|.++.+.-+ | |++..+..+||++ .+|.+|+++..|+.+
T Consensus 166 ll~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv-~~L~~gkv~~~Gt~~ 231 (263)
T COG1127 166 LLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRV-AVLADGKVIAEGTPE 231 (263)
T ss_pred EEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceE-EEEeCCEEEEeCCHH
Confidence 9999999999999998888888888876533 3 9999999999999 999999999888654
No 32
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.78 E-value=3e-20 Score=178.25 Aligned_cols=159 Identities=16% Similarity=0.214 Sum_probs=122.2
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh------hhhccCC
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------CQLFKPK 83 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l------~~~~~~~ 83 (374)
++.+|+++++. ..+||+||||||||||+++|+|. +.|++|.|.++|.++... ...|.||
T Consensus 19 ~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl-----------~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q 87 (306)
T PRK13537 19 DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGL-----------THPDAGSISLCGEPVPSRARHARQRVGVVPQ 87 (306)
T ss_pred CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCEecccchHHHHhcEEEEec
Confidence 45789998865 45999999999999999999999 889999999999876432 1257788
Q ss_pred CC-ccccchHhhHhhhhccccCCCC-----------------CCCCCceeEecC------------CCCCchhHHHHHHH
Q 017295 84 SA-VPAFLEIHDIAGLVRGAHEGQG-----------------AFEDPDIIHVDD------------SVDPVRDLEVISAE 133 (374)
Q Consensus 84 ~~-~~~~~~v~D~~gl~~~~~~~~~-----------------~~~~~~il~l~~------------~~dP~~~l~ilde~ 133 (374)
.. +++.+++.|++.+....+.... ...+..+-.+++ +.+| +++++|||
T Consensus 88 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P--~lllLDEP 165 (306)
T PRK13537 88 FDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDP--DVLVLDEP 165 (306)
T ss_pred cCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCC--CEEEEeCC
Confidence 76 6677889888875432211000 011122222222 6789 99999999
Q ss_pred HHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 134 LRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 134 l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
++++|+.....+++.+.++.+++.+ |++.++..+||++ .+|++|+++..++.
T Consensus 166 t~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i-~il~~G~i~~~g~~ 222 (306)
T PRK13537 166 TTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRL-CVIEEGRKIAEGAP 222 (306)
T ss_pred CcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEE-EEEECCEEEEECCH
Confidence 9999999999999999988755554 9999999999999 99999999877653
No 33
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.78 E-value=9.1e-19 Score=173.61 Aligned_cols=79 Identities=38% Similarity=0.607 Sum_probs=64.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeC-CcchhhhhhhccCCCCccccchHhhHhhhhccccC
Q 017295 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIP-DERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~-g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~~~~~ 104 (374)
.|||||.||||||||||+|++.++.+++|||||+.|+.|.+.++ +.+ +.+.|+||++.+++.
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~-----------------~~laD~PGliega~~ 222 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRS-----------------FVMADIPGLIEGASE 222 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCce-----------------EEEEECCCCcccccc
Confidence 49999999999999999999999999999999999999999886 332 789999999887775
Q ss_pred CCC--------CCCCCceeEecCCC
Q 017295 105 GQG--------AFEDPDIIHVDDSV 121 (374)
Q Consensus 105 ~~~--------~~~~~~il~l~~~~ 121 (374)
+.+ .-..+.++++.|+.
T Consensus 223 ~~gLg~~fLrhier~~llI~VID~s 247 (424)
T PRK12297 223 GVGLGHQFLRHIERTRVIVHVIDMS 247 (424)
T ss_pred cchHHHHHHHHHhhCCEEEEEEeCC
Confidence 433 11245666766644
No 34
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=99.78 E-value=2.1e-19 Score=134.95 Aligned_cols=70 Identities=26% Similarity=0.324 Sum_probs=65.2
Q ss_pred ceeeeccCC----CCeeeEEecCCCChhHhhhhcchhhhcceEEEEEecchhhhhcCChHHHhhcCcccccCCcceecCC
Q 017295 284 LIYFFTAGP----DEVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVMKFDDLKELGSEPAVKAAGKYKQEGKTYVVQDG 359 (374)
Q Consensus 284 li~~ft~~~----~e~~~~~i~~gsta~~~a~~IHsd~~~~f~~A~v~~~~d~~~~~~~~~~~~~g~~~~~g~dy~~~dg 359 (374)
||++||+.+ |..+|.++|+||||.|+|.+||+||.+.|++|.||+ .+++..| |++|.||+|+||
T Consensus 1 lirvytk~~g~~~d~~~~liL~~GaTV~D~a~~iH~di~~~f~~A~v~g----------~s~~~~g--q~Vgl~~~L~d~ 68 (75)
T cd01666 1 LIRVYTKPKGQEPDFDEPVILRRGSTVEDVCNKIHKDLVKQFKYALVWG----------SSVKHSP--QRVGLDHVLEDE 68 (75)
T ss_pred CEEEEeCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHhCCeeEEec----------cCCcCCC--eECCCCCEecCC
Confidence 689999964 678999999999999999999999999999999999 7777877 999999999999
Q ss_pred CEEEEE
Q 017295 360 DIIFFK 365 (374)
Q Consensus 360 Dii~~~ 365 (374)
|||+|.
T Consensus 69 DvVeI~ 74 (75)
T cd01666 69 DVVQIV 74 (75)
T ss_pred CEEEEe
Confidence 999984
No 35
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.77 E-value=2e-19 Score=166.91 Aligned_cols=160 Identities=17% Similarity=0.185 Sum_probs=125.2
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhh----------h
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ----------L 79 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~----------~ 79 (374)
...+|++++. |..+||||++|||||||++++.++ ..|++|.|.++|.++..+.. .
T Consensus 18 ~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~L-----------e~PtsG~v~v~G~di~~l~~~~Lr~~R~~IG 86 (339)
T COG1135 18 TVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLL-----------ERPTSGSVFVDGQDLTALSEAELRQLRQKIG 86 (339)
T ss_pred ceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhcc-----------CCCCCceEEEcCEecccCChHHHHHHHhhcc
Confidence 4578998876 556999999999999999999999 78999999999987654332 4
Q ss_pred ccCCCC-ccccchHhhHhhhhccccCCCC-----------------CCCCCceeEecC------------CCCCchhHHH
Q 017295 80 FKPKSA-VPAFLEIHDIAGLVRGAHEGQG-----------------AFEDPDIIHVDD------------SVDPVRDLEV 129 (374)
Q Consensus 80 ~~~~~~-~~~~~~v~D~~gl~~~~~~~~~-----------------~~~~~~il~l~~------------~~dP~~~l~i 129 (374)
+.+|.+ +....++.+++.+....++..+ ...+.....+++ +.+| ++++
T Consensus 87 MIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P--~iLL 164 (339)
T COG1135 87 MIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNP--KILL 164 (339)
T ss_pred EEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCC--CEEE
Confidence 566665 6666788888877543332111 111222333444 6789 9999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHccCc------cchHHHHHHHHHHHHHHhCCCceeccCCC
Q 017295 130 ISAELRLKDIEFMERRIEDVEKSMKRSND------KQLKIEHELCQRVKAWLQDGKDVRLGDWK 187 (374)
Q Consensus 130 lde~l~~~D~~~~~~~~~~i~~~~~~~~~------H~~~~~~~~~d~v~~~L~~G~iv~~~~~~ 187 (374)
.||+++.+|+++...+++.+.+..++-+. |.++.+..+|||| .+|++|+++..|+..
T Consensus 165 ~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rV-avm~~G~lvE~G~v~ 227 (339)
T COG1135 165 CDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRV-AVLDQGRLVEEGTVS 227 (339)
T ss_pred ecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhh-eEeeCCEEEEeccHH
Confidence 99999999999999999999998876443 9999999999999 999999999887654
No 36
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.77 E-value=1e-19 Score=165.19 Aligned_cols=150 Identities=17% Similarity=0.185 Sum_probs=119.0
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh--hhhccCCCC-c
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--CQLFKPKSA-V 86 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l--~~~~~~~~~-~ 86 (374)
...||+++++. +.|+||||+|||||||||+|+|+ ..|++|+|.++|..+..- ...|++|+. +
T Consensus 15 ~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL-----------~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~L 83 (248)
T COG1116 15 GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGL-----------EKPTSGEVLLDGRPVTGPGPDIGYVFQEDAL 83 (248)
T ss_pred ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCcccCCCCCCEEEEeccCcc
Confidence 36889998864 55999999999999999999999 889999999999887332 226788886 7
Q ss_pred cccchHhhHhhhhccccC---CCC--------------CCCCCceeEecC------------CCCCchhHHHHHHHHHhh
Q 017295 87 PAFLEIHDIAGLVRGAHE---GQG--------------AFEDPDIIHVDD------------SVDPVRDLEVISAELRLK 137 (374)
Q Consensus 87 ~~~~~v~D~~gl~~~~~~---~~~--------------~~~~~~il~l~~------------~~dP~~~l~ilde~l~~~ 137 (374)
++..++.||+.+...... .+. .|.+...-.+++ +.+| +++++|||+..+
T Consensus 84 lPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P--~lLLlDEPFgAL 161 (248)
T COG1116 84 LPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRP--KLLLLDEPFGAL 161 (248)
T ss_pred cchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCC--CEEEEcCCcchh
Confidence 888999999998644321 100 444555555555 6789 999999999999
Q ss_pred cHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhC
Q 017295 138 DIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQD 177 (374)
Q Consensus 138 D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~ 177 (374)
|..+.....+.+.++-++ +.| |+++++..++||| .+|.+
T Consensus 162 DalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRi-vvl~~ 206 (248)
T COG1116 162 DALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRV-VVLSN 206 (248)
T ss_pred hHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEE-EEecC
Confidence 999999988887766644 343 9999999999999 77766
No 37
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.77 E-value=1.1e-19 Score=158.50 Aligned_cols=162 Identities=17% Similarity=0.286 Sum_probs=124.8
Q ss_pred ccccccccccCCc----eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhh-----hhh--hcc
Q 017295 13 AERPILGRFSSHL----KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LCQ--LFK 81 (374)
Q Consensus 13 ~~~~vL~~i~~~~----~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~-----l~~--~~~ 81 (374)
+++.||++++... ..+|||||||||||||.+++++ +.+++|.|.++|.++.. +++ ...
T Consensus 12 ~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL-----------~~~d~G~i~i~g~~~~~~~s~~LAk~lSIL 80 (252)
T COG4604 12 GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRL-----------LKKDSGEITIDGLELTSTPSKELAKKLSIL 80 (252)
T ss_pred CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHh-----------ccccCceEEEeeeecccCChHHHHHHHHHH
Confidence 4678899887654 4999999999999999999999 88999999999988743 232 122
Q ss_pred CCC-CccccchHhhHhhhhcccc-CCCC------------------CCCCC------------ceeEecCCCCCchhHHH
Q 017295 82 PKS-AVPAFLEIHDIAGLVRGAH-EGQG------------------AFEDP------------DIIHVDDSVDPVRDLEV 129 (374)
Q Consensus 82 ~~~-~~~~~~~v~D~~gl~~~~~-~~~~------------------~~~~~------------~il~l~~~~dP~~~l~i 129 (374)
.|. .+...++|.|.++|++..+ +|.- .+.+. ..+...-+.|. +..+
T Consensus 81 kQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdT--dyvl 158 (252)
T COG4604 81 KQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDT--DYVL 158 (252)
T ss_pred HhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccC--cEEE
Confidence 333 3566789999999987654 4432 11111 11111125566 8999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccCCCh
Q 017295 130 ISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWKA 188 (374)
Q Consensus 130 lde~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~~~ 188 (374)
+|||++.+|+.+.-..++.+++++++ +++ ||.+.+...+|.+ ..|++|+++..|++++
T Consensus 159 LDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~I-VAlK~G~vv~~G~~~e 222 (252)
T COG4604 159 LDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHI-VALKNGKVVKQGSPDE 222 (252)
T ss_pred ecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhhe-eeecCCEEEecCCHHH
Confidence 99999999999999999999988865 444 9999999999999 9999999999887654
No 38
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.76 E-value=6e-20 Score=178.29 Aligned_cols=159 Identities=14% Similarity=0.184 Sum_probs=121.0
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh------hhhccCC
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------CQLFKPK 83 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l------~~~~~~~ 83 (374)
++.+|+++++ |..+||+|||||||||||++|+|. +.|++|.|.++|.++... ...|.||
T Consensus 53 ~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl-----------~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q 121 (340)
T PRK13536 53 DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGM-----------TSPDAGKITVLGVPVPARARLARARIGVVPQ 121 (340)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcC-----------CCCCceEEEECCEECCcchHHHhccEEEEeC
Confidence 4568998875 456999999999999999999999 889999999999876421 1257777
Q ss_pred CC-ccccchHhhHhhhhccccCCCC-----------------CCCCCceeEecC------------CCCCchhHHHHHHH
Q 017295 84 SA-VPAFLEIHDIAGLVRGAHEGQG-----------------AFEDPDIIHVDD------------SVDPVRDLEVISAE 133 (374)
Q Consensus 84 ~~-~~~~~~v~D~~gl~~~~~~~~~-----------------~~~~~~il~l~~------------~~dP~~~l~ilde~ 133 (374)
.. ++..+++.|++.+....+.... ...+..+-.+++ +.+| +++++|||
T Consensus 122 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P--~lLiLDEP 199 (340)
T PRK13536 122 FDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDP--QLLILDEP 199 (340)
T ss_pred CccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCC--CEEEEECC
Confidence 76 5667888888765332211000 001112222222 5789 99999999
Q ss_pred HHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 134 LRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 134 l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
++++|+.....+++.+.++.+.+.+ |++.++..+||+| .+|++|+++..++.
T Consensus 200 t~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i-~il~~G~i~~~g~~ 256 (340)
T PRK13536 200 TTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRL-CVLEAGRKIAEGRP 256 (340)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEE-EEEECCEEEEEcCH
Confidence 9999999999999999988765554 9999999999999 99999999877653
No 39
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.76 E-value=3.4e-19 Score=159.62 Aligned_cols=163 Identities=17% Similarity=0.190 Sum_probs=124.5
Q ss_pred cccccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhh---------
Q 017295 12 PAERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ--------- 78 (374)
Q Consensus 12 ~~~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~--------- 78 (374)
|+++.+|++|++. +.|+|||++||||||||++|.|+ .+|+.|.|.++|.++..+..
T Consensus 14 p~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl-----------~d~t~G~i~~~g~~i~~~~~k~lr~~r~~ 82 (258)
T COG3638 14 PGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGL-----------VDPTSGEILFNGVQITKLKGKELRKLRRD 82 (258)
T ss_pred CCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcc-----------cCCCcceEEecccchhccchHHHHHHHHh
Confidence 4678899988764 55999999999999999999999 99999999999987644221
Q ss_pred -hccCCCC-ccccchHhhHhhhhccccCCCC-----CC------------CCCce--------eEecC------------
Q 017295 79 -LFKPKSA-VPAFLEIHDIAGLVRGAHEGQG-----AF------------EDPDI--------IHVDD------------ 119 (374)
Q Consensus 79 -~~~~~~~-~~~~~~v~D~~gl~~~~~~~~~-----~~------------~~~~i--------l~l~~------------ 119 (374)
+|..|.. +.+.+++++++-.++-.+.... .| ..-.+ -.+++
T Consensus 83 iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL 162 (258)
T COG3638 83 IGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARAL 162 (258)
T ss_pred ceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHH
Confidence 4556655 6667788888776543332111 01 00000 11122
Q ss_pred CCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHcc-Cc-----cchHHHHHHHHHHHHHHhCCCceeccCCCh
Q 017295 120 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRS-ND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWKA 188 (374)
Q Consensus 120 ~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~-~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~~~ 188 (374)
+.+| ++.+-|||.+.+|+...++.++.+++..++. .| |+++.+.++|+|+ .-|++|+++.+++.++
T Consensus 163 ~Q~p--kiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Ri-igl~~G~ivfDg~~~e 234 (258)
T COG3638 163 VQQP--KIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRI-IGLKAGRIVFDGPASE 234 (258)
T ss_pred hcCC--CEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhh-eEecCCcEEEeCChhh
Confidence 5688 9999999999999999999999999888654 44 9999999999999 9999999999987655
No 40
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.76 E-value=6e-19 Score=151.79 Aligned_cols=59 Identities=41% Similarity=0.665 Sum_probs=50.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhc
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~ 100 (374)
++|+++|.||+|||||||+|||.+..++|||++|.++..|.+.+.+.. +.++|+||+..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~-----------------~~lvDlPG~ys 59 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQ-----------------VELVDLPGIYS 59 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEE-----------------EEEEE----SS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCce-----------------EEEEECCCccc
Confidence 468999999999999999999999999999999999999999998754 79999999853
No 41
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.76 E-value=1.3e-19 Score=173.54 Aligned_cols=158 Identities=15% Similarity=0.144 Sum_probs=119.4
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh------hhhccCC
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------CQLFKPK 83 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l------~~~~~~~ 83 (374)
++.+|+++++. ..+||+|+||||||||+++|+|. +.|++|.|.++|.++... ...|.+|
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q 73 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTL-----------LRPTSGTARVAGYDVVREPRKVRRSIGIVPQ 73 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEEcccCHHHHHhhcEEecC
Confidence 45688888764 56999999999999999999999 889999999999775321 1256777
Q ss_pred CC-ccccchHhhHhhhhccccCCC------C--------C---CCCCceeEecC------------CCCCchhHHHHHHH
Q 017295 84 SA-VPAFLEIHDIAGLVRGAHEGQ------G--------A---FEDPDIIHVDD------------SVDPVRDLEVISAE 133 (374)
Q Consensus 84 ~~-~~~~~~v~D~~gl~~~~~~~~------~--------~---~~~~~il~l~~------------~~dP~~~l~ilde~ 133 (374)
.. ++..+++.+++.+........ . . ..+..+-.+++ +.+| +++++|||
T Consensus 74 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p--~lllLDEP 151 (302)
T TIGR01188 74 YASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQP--DVLFLDEP 151 (302)
T ss_pred CCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCC--CEEEEeCC
Confidence 75 666778888876532211100 0 1 11222223333 5789 99999999
Q ss_pred HHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 134 LRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 134 l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
++++|+......++.+.++.+++.+ |++.++..+||++ .+|++|+++..++
T Consensus 152 t~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v-~~l~~G~i~~~g~ 207 (302)
T TIGR01188 152 TTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRI-AIIDHGRIIAEGT 207 (302)
T ss_pred CcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 9999999999999999888755554 9999999999999 9999999987664
No 42
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.75 E-value=7.4e-20 Score=160.05 Aligned_cols=160 Identities=18% Similarity=0.149 Sum_probs=118.7
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhh------hcc-CC
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ------LFK-PK 83 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~------~~~-~~ 83 (374)
.++++++++ |..+||+|+|||||||++++|+++ +.|++|.|+++|.+....+. ... .+
T Consensus 15 v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatl-----------L~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e 83 (245)
T COG4555 15 VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATL-----------LIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGE 83 (245)
T ss_pred HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHh-----------ccCCCceEEEeecccccChHHHhhhcceecCC
Confidence 347888886 456999999999999999999999 99999999999977543332 122 33
Q ss_pred CCccccchHhhHhhhhccccCCCC-----------------------------CCCCCceeEecCCCCCchhHHHHHHHH
Q 017295 84 SAVPAFLEIHDIAGLVRGAHEGQG-----------------------------AFEDPDIIHVDDSVDPVRDLEVISAEL 134 (374)
Q Consensus 84 ~~~~~~~~v~D~~gl~~~~~~~~~-----------------------------~~~~~~il~l~~~~dP~~~l~ilde~l 134 (374)
..++..+++.+++.+....+.-.+ .++....+.-.-.+|| .++++|||+
T Consensus 84 ~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P--~i~vlDEP~ 161 (245)
T COG4555 84 RGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDP--SILVLDEPT 161 (245)
T ss_pred cChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCC--CeEEEcCCC
Confidence 447778888888766433221100 0111111111115689 999999999
Q ss_pred HhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCCCh
Q 017295 135 RLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWKA 188 (374)
Q Consensus 135 ~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~~~ 188 (374)
+++|+....++.+.+.+....+.. |.+.++..+||++ .+|++|.++..++...
T Consensus 162 sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrv-ivlh~Gevv~~gs~~~ 219 (245)
T COG4555 162 SGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRV-IVLHKGEVVLEGSIEA 219 (245)
T ss_pred CCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheE-EEEecCcEEEcCCHHH
Confidence 999999999999999887765543 9999999999999 9999999998876544
No 43
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.74 E-value=3.7e-19 Score=159.23 Aligned_cols=160 Identities=18% Similarity=0.222 Sum_probs=126.8
Q ss_pred ccccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhh--------hc
Q 017295 13 AERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ--------LF 80 (374)
Q Consensus 13 ~~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~--------~~ 80 (374)
+...+|.++++ |..++|+|+||||||||+++|+|+ .+|.+|.|.+.|+++..++. .|
T Consensus 14 G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl-----------~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~ 82 (237)
T COG0410 14 GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGL-----------VRPRSGRIIFDGEDITGLPPHERARLGIAY 82 (237)
T ss_pred cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeeEEECCeecCCCCHHHHHhCCeEe
Confidence 34678888876 456999999999999999999999 88999999999999876543 58
Q ss_pred cCCCC-ccccchHhhHhhhhccccCCCC-----------CC------CCCceeEecC------------CCCCchhHHHH
Q 017295 81 KPKSA-VPAFLEIHDIAGLVRGAHEGQG-----------AF------EDPDIIHVDD------------SVDPVRDLEVI 130 (374)
Q Consensus 81 ~~~~~-~~~~~~v~D~~gl~~~~~~~~~-----------~~------~~~~il~l~~------------~~dP~~~l~il 130 (374)
+||.. +++.++|.|++.++........ .| .+..--.+++ +.+| .++++
T Consensus 83 VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~P--klLLL 160 (237)
T COG0410 83 VPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRP--KLLLL 160 (237)
T ss_pred CcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCC--CEEEe
Confidence 89876 8899999999988643322110 00 1111112222 5789 99999
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHccC-c-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 131 SAELRLKDIEFMERRIEDVEKSMKRSN-D-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 131 de~l~~~D~~~~~~~~~~i~~~~~~~~-~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
|||..++-+..++++.+.|.++.++++ + ++...+.+++|+. .+|++|+++..|+.
T Consensus 161 DEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~-yvle~Griv~~G~~ 221 (237)
T COG0410 161 DEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRG-YVLENGRIVLSGTA 221 (237)
T ss_pred cCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEE-EEEeCCEEEEecCH
Confidence 999999999999999999999986644 4 7888999999999 99999999988754
No 44
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.74 E-value=2.4e-18 Score=151.95 Aligned_cols=165 Identities=15% Similarity=0.138 Sum_probs=124.3
Q ss_pred ccccccccccCCce----EEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh-------h--hh
Q 017295 13 AERPILGRFSSHLK----IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-------C--QL 79 (374)
Q Consensus 13 ~~~~vL~~i~~~~~----vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l-------~--~~ 79 (374)
+++.+|++|++.+. .+||||+|||||||+++|...+- -+|.+ -..|+|.++|+++... . .+
T Consensus 18 g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmnd---l~~~~---r~~G~v~~~g~ni~~~~~d~~~lRr~vG 91 (253)
T COG1117 18 GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMND---LIPGA---RVEGEVLLDGKNIYDPKVDVVELRRRVG 91 (253)
T ss_pred CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcc---cCcCc---eEEEEEEECCeeccCCCCCHHHHHHHhe
Confidence 46789999998765 99999999999999999999832 12222 1359999999887432 1 15
Q ss_pred ccCCCCccccchHhhHhhhhccccCCCC--------------CC-------CCCceeEecC------------CCCCchh
Q 017295 80 FKPKSAVPAFLEIHDIAGLVRGAHEGQG--------------AF-------EDPDIIHVDD------------SVDPVRD 126 (374)
Q Consensus 80 ~~~~~~~~~~~~v~D~~gl~~~~~~~~~--------------~~-------~~~~il~l~~------------~~dP~~~ 126 (374)
++.|+.-|..++++|++.++...++-.. ++ .++.-.-+++ +.+| +
T Consensus 92 MVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~P--e 169 (253)
T COG1117 92 MVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKP--E 169 (253)
T ss_pred eeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCC--c
Confidence 6777776666999999999866554321 00 1112222333 6799 9
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHccC----ccchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 127 LEVISAELRLKDIEFMERRIEDVEKSMKRSN----DKQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 127 l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~----~H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
++++|||++.+|+-...++-+.|.+++++-. ||++..+.+++|+. .++..|+++..++.
T Consensus 170 VlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~t-aFf~~G~LvE~g~T 232 (253)
T COG1117 170 VLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYT-AFFYLGELVEFGPT 232 (253)
T ss_pred EEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhh-hhhcccEEEEEcCH
Confidence 9999999999999999998888888874432 39999999999999 99999999987653
No 45
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.74 E-value=9.2e-19 Score=158.07 Aligned_cols=156 Identities=26% Similarity=0.381 Sum_probs=113.1
Q ss_pred cccccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchh--hhhhhccCCCC
Q 017295 12 PAERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE--WLCQLFKPKSA 85 (374)
Q Consensus 12 ~~~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~--~l~~~~~~~~~ 85 (374)
.....+|+++++. ..+||||+||||||||+++|+|. ++|++|.|.+.|+-.. .+...++|+-.
T Consensus 37 ~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi-----------~~Pt~G~v~v~G~v~~li~lg~Gf~pelT 105 (249)
T COG1134 37 VAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGI-----------YKPTSGKVKVTGKVAPLIELGAGFDPELT 105 (249)
T ss_pred cceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCc-----------cCCCCceEEEcceEehhhhcccCCCcccc
Confidence 3567899999975 55999999999999999999999 9999999999986321 12223333211
Q ss_pred cccc-------------------chHhhHhhhh-------ccccCCCC---CCCCCceeEecCCCCCchhHHHHHHHHHh
Q 017295 86 VPAF-------------------LEIHDIAGLV-------RGAHEGQG---AFEDPDIIHVDDSVDPVRDLEVISAELRL 136 (374)
Q Consensus 86 ~~~~-------------------~~v~D~~gl~-------~~~~~~~~---~~~~~~il~l~~~~dP~~~l~ilde~l~~ 136 (374)
-..+ -++.|.+.|+ +.+|.|+. +|. ++-..+| +++++||-++.
T Consensus 106 GreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFs------ia~~~~p--dILllDEvlav 177 (249)
T COG1134 106 GRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFS------VATHVEP--DILLLDEVLAV 177 (249)
T ss_pred hHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHh------hhhhcCC--CEEEEehhhhc
Confidence 0000 0222333332 22222221 221 1125688 99999999999
Q ss_pred hcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCCC
Q 017295 137 KDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 187 (374)
Q Consensus 137 ~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~~ 187 (374)
-|....++..+++.++.+++.+ |++..+.++||++ .+|+.|++...|+++
T Consensus 178 GD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~-i~l~~G~i~~~G~~~ 232 (249)
T COG1134 178 GDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRA-IWLEHGQIRMEGSPE 232 (249)
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCee-EEEeCCEEEEcCCHH
Confidence 9999999999999998767665 9999999999999 999999999887654
No 46
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.74 E-value=3.1e-19 Score=176.41 Aligned_cols=159 Identities=18% Similarity=0.314 Sum_probs=123.0
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-------hhccC
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKP 82 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-------~~~~~ 82 (374)
++.+|+++++. ..+||+|||||||||||++|+|. ++|++|.|.++|.++..+. ..|.+
T Consensus 15 ~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGl-----------l~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~ 83 (402)
T PRK09536 15 DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGT-----------LTPTAGTVLVAGDDVEALSARAASRRVASVP 83 (402)
T ss_pred CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcC-----------CCCCCcEEEECCEEcCcCCHHHHhcceEEEc
Confidence 46789998865 45999999999999999999999 8899999999998764322 14677
Q ss_pred CCC-ccccchHhhHhhhhccccCC----CC-----------------CCCCCceeEecC------------CCCCchhHH
Q 017295 83 KSA-VPAFLEIHDIAGLVRGAHEG----QG-----------------AFEDPDIIHVDD------------SVDPVRDLE 128 (374)
Q Consensus 83 ~~~-~~~~~~v~D~~gl~~~~~~~----~~-----------------~~~~~~il~l~~------------~~dP~~~l~ 128 (374)
|+. ++..+++.|++.+.+..+.+ .. .+.+..+..+++ +.+| +++
T Consensus 84 q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P--~iL 161 (402)
T PRK09536 84 QDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQAT--PVL 161 (402)
T ss_pred cCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCC--CEE
Confidence 776 56678999988775432110 00 111222233333 6789 999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 129 VISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 129 ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
++|||++++|+.....+++.+.++.+++.+ |+++.+..+||++ .+|++|+++..++.
T Consensus 162 LLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adri-i~l~~G~iv~~G~~ 223 (402)
T PRK09536 162 LLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDEL-VLLADGRVRAAGPP 223 (402)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEE-EEEECCEEEEecCH
Confidence 999999999999999999999988755544 9999999999999 99999999887654
No 47
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=6.5e-19 Score=162.66 Aligned_cols=158 Identities=22% Similarity=0.201 Sum_probs=116.8
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh--------h--hh
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------C--QL 79 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l--------~--~~ 79 (374)
++.+|+++++ |..+||+|+||||||||+++|+|. .+|++|.|.++|.++... . ..
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~ 80 (235)
T cd03261 12 GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGL-----------LRPDSGEVLIDGEDISGLSEAELYRLRRRMG 80 (235)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEEccccChhhHHHHhcceE
Confidence 3468888875 456999999999999999999999 889999999999765321 1 14
Q ss_pred ccCCCC-ccccchHhhHhhhhccccCCCC------------------CCCCCceeEecC------------CCCCchhHH
Q 017295 80 FKPKSA-VPAFLEIHDIAGLVRGAHEGQG------------------AFEDPDIIHVDD------------SVDPVRDLE 128 (374)
Q Consensus 80 ~~~~~~-~~~~~~v~D~~gl~~~~~~~~~------------------~~~~~~il~l~~------------~~dP~~~l~ 128 (374)
|.+|.. +++.+++.|++.+......+.. .+.+..+..+++ +.+| +++
T Consensus 81 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p--~ll 158 (235)
T cd03261 81 MLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDP--ELL 158 (235)
T ss_pred EEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCC--CEE
Confidence 667765 5556788888765421111000 111122222333 5689 999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 129 VISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 129 ilde~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
++|||++++|+.....+++.+.+..++ +.+ |++..+..+||++ .+|++|+++..++
T Consensus 159 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v-~~l~~G~i~~~g~ 220 (235)
T cd03261 159 LYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRI-AVLYDGKIVAEGT 220 (235)
T ss_pred EecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEE-EEEECCeEEEecC
Confidence 999999999999999999999887653 444 9999999999999 8999999876554
No 48
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.73 E-value=2.5e-18 Score=148.21 Aligned_cols=153 Identities=14% Similarity=0.136 Sum_probs=116.1
Q ss_pred ccCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhh-----hccCCCC-ccccchHhh
Q 017295 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-----LFKPKSA-VPAFLEIHD 94 (374)
Q Consensus 21 i~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~-----~~~~~~~-~~~~~~v~D 94 (374)
+..+.+++|+||+|||||||+|.|+|. ..|.+|.|.++|.+...... .+..|+. ++++++|..
T Consensus 22 v~~ge~vAi~GpSGaGKSTLLnLIAGF-----------~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~q 90 (231)
T COG3840 22 VPAGEIVAILGPSGAGKSTLLNLIAGF-----------ETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQ 90 (231)
T ss_pred ecCCcEEEEECCCCccHHHHHHHHHhc-----------cCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhh
Confidence 456778999999999999999999999 77999999999988654332 3455655 788999999
Q ss_pred HhhhhccccCCCC-----------------CCCCCceeEecC------------CCCCchhHHHHHHHHHhhcHHHHHHH
Q 017295 95 IAGLVRGAHEGQG-----------------AFEDPDIIHVDD------------SVDPVRDLEVISAELRLKDIEFMERR 145 (374)
Q Consensus 95 ~~gl~~~~~~~~~-----------------~~~~~~il~l~~------------~~dP~~~l~ilde~l~~~D~~~~~~~ 145 (374)
+++++...+.... .|.+...-.+++ ..+ +.++++|||++.+|+..+...
T Consensus 91 NigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~--~PilLLDEPFsALdP~LR~eM 168 (231)
T COG3840 91 NIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVRE--QPILLLDEPFSALDPALRAEM 168 (231)
T ss_pred hhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhcc--CCeEEecCchhhcCHHHHHHH
Confidence 9998754432221 222222223333 111 157889999999999999999
Q ss_pred HHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccCCC
Q 017295 146 IEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 187 (374)
Q Consensus 146 ~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~~ 187 (374)
+..+.++..+ +.| |..+++..+++++ .++++|++...++.+
T Consensus 169 l~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~-~fl~~Gri~~~g~~~ 215 (231)
T COG3840 169 LALVSQLCDERKMTLLMVTHHPEDAARIADRV-VFLDNGRIAAQGSTQ 215 (231)
T ss_pred HHHHHHHHHhhCCEEEEEeCCHHHHHHhhhce-EEEeCCEEEeeccHH
Confidence 9988887754 333 9999999999999 999999998876543
No 49
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.73 E-value=2.5e-17 Score=159.37 Aligned_cols=83 Identities=36% Similarity=0.590 Sum_probs=64.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhccccC
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~~~~~ 104 (374)
..|||||.||||||||||+|++.++.+++|||||+.|+.|.+.+.+. ..+.+.|+||++.+++.
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~----------------~~~~i~D~PGli~ga~~ 222 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDY----------------KSFVIADIPGLIEGASE 222 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCC----------------cEEEEEeCCCccCCCCc
Confidence 44999999999999999999999999999999999999999988431 12789999999887765
Q ss_pred CCC--------CCCCCceeEecCCCCC
Q 017295 105 GQG--------AFEDPDIIHVDDSVDP 123 (374)
Q Consensus 105 ~~~--------~~~~~~il~l~~~~dP 123 (374)
+.+ .-..+.++++.|+.++
T Consensus 223 ~~gLg~~flrhie~a~vlI~ViD~s~~ 249 (335)
T PRK12299 223 GAGLGHRFLKHIERTRLLLHLVDIEAV 249 (335)
T ss_pred cccHHHHHHHHhhhcCEEEEEEcCCCC
Confidence 433 1123456666665444
No 50
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=5.3e-19 Score=172.75 Aligned_cols=159 Identities=13% Similarity=0.117 Sum_probs=122.0
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-----hhccCCC
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS 84 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-----~~~~~~~ 84 (374)
++.+|+++++. ..++|+||||||||||+++|+|+ ..|++|.|.++|.++.... ..|.+|.
T Consensus 16 ~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl-----------~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~ 84 (356)
T PRK11650 16 KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGL-----------ERITSGEIWIGGRVVNELEPADRDIAMVFQN 84 (356)
T ss_pred CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCC-----------CCCCceEEEECCEECCCCCHHHCCEEEEeCC
Confidence 45688888764 45999999999999999999999 7899999999998764322 2577887
Q ss_pred C-ccccchHhhHhhhhccccCCCC-----------------CCCCCceeEecC------------CCCCchhHHHHHHHH
Q 017295 85 A-VPAFLEIHDIAGLVRGAHEGQG-----------------AFEDPDIIHVDD------------SVDPVRDLEVISAEL 134 (374)
Q Consensus 85 ~-~~~~~~v~D~~gl~~~~~~~~~-----------------~~~~~~il~l~~------------~~dP~~~l~ilde~l 134 (374)
. +++++++.|++.+......... .+.+..+-.+++ +.+| +++++|||+
T Consensus 85 ~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P--~llLLDEP~ 162 (356)
T PRK11650 85 YALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREP--AVFLFDEPL 162 (356)
T ss_pred ccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCC--CEEEEeCCc
Confidence 6 6778899999877532111000 111222223333 5789 999999999
Q ss_pred HhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 135 RLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 135 ~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
+++|....+..++.+.++.++ +.+ |+..++..+||++ .+|++|+++..++.
T Consensus 163 s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i-~vl~~G~i~~~g~~ 219 (356)
T PRK11650 163 SNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRV-VVMNGGVAEQIGTP 219 (356)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE-EEEeCCEEEEECCH
Confidence 999999999999999887754 443 9999999999999 99999999877653
No 51
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.72 E-value=5.5e-19 Score=171.51 Aligned_cols=158 Identities=16% Similarity=0.191 Sum_probs=120.9
Q ss_pred ccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh----------hhc
Q 017295 15 RPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC----------QLF 80 (374)
Q Consensus 15 ~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~----------~~~ 80 (374)
+.+|+++++. ..+||+|+||||||||+++|+|+ .+|++|.|.++|.++..+. ..|
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl-----------~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~ 86 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL-----------ERPTSGSVIVDGQDLTTLSNSELTKARRQIGM 86 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCEECCcCCHHHHHHHhcCEEE
Confidence 4789998864 45999999999999999999999 8899999999998764321 256
Q ss_pred cCCCC-ccccchHhhHhhhhccccCCCC-----------------CCCCCceeEecC------------CCCCchhHHHH
Q 017295 81 KPKSA-VPAFLEIHDIAGLVRGAHEGQG-----------------AFEDPDIIHVDD------------SVDPVRDLEVI 130 (374)
Q Consensus 81 ~~~~~-~~~~~~v~D~~gl~~~~~~~~~-----------------~~~~~~il~l~~------------~~dP~~~l~il 130 (374)
.+|.. ++...++.|++.+......... .+.+.....+++ +.+| +++++
T Consensus 87 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P--~iLLl 164 (343)
T TIGR02314 87 IFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNP--KVLLC 164 (343)
T ss_pred EECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCC--CEEEE
Confidence 77775 5666788888876432111000 111222223333 5789 99999
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 131 SAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 131 de~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
|||++++|+.....+++.+.++.++ +.+ |+++.+..+||++ .+|++|+++..++.
T Consensus 165 DEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v-~vl~~G~iv~~g~~ 225 (343)
T TIGR02314 165 DEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCV-AVISNGELIEQGTV 225 (343)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEEcCH
Confidence 9999999999999999999988764 444 9999999999999 99999999876653
No 52
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=7.8e-19 Score=171.16 Aligned_cols=158 Identities=14% Similarity=0.209 Sum_probs=122.0
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-----hhccCCC
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS 84 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-----~~~~~~~ 84 (374)
++.+|+++++ |..++|+||||||||||+++|+|+ .+|++|.|.++|.++.... ..|.+|.
T Consensus 18 ~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl-----------~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~ 86 (351)
T PRK11432 18 SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGL-----------EKPTEGQIFIDGEDVTHRSIQQRDICMVFQS 86 (351)
T ss_pred CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCC-----------CCCCceEEEECCEECCCCCHHHCCEEEEeCC
Confidence 3567888876 456999999999999999999999 8899999999998764322 2577787
Q ss_pred C-ccccchHhhHhhhhccccCCCC-----------------CCCCCceeEecC------------CCCCchhHHHHHHHH
Q 017295 85 A-VPAFLEIHDIAGLVRGAHEGQG-----------------AFEDPDIIHVDD------------SVDPVRDLEVISAEL 134 (374)
Q Consensus 85 ~-~~~~~~v~D~~gl~~~~~~~~~-----------------~~~~~~il~l~~------------~~dP~~~l~ilde~l 134 (374)
. +++++++.|++.+......... .+.+.....+++ +.+| +++++|||+
T Consensus 87 ~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P--~lLLLDEP~ 164 (351)
T PRK11432 87 YALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKP--KVLLFDEPL 164 (351)
T ss_pred cccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCC--CEEEEcCCc
Confidence 6 6778899999987532111000 112222333333 5689 999999999
Q ss_pred HhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 135 RLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 135 ~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+++|.......+..+.++.++ +.+ |+..++..+||++ .+|++|+++..++
T Consensus 165 s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i-~vm~~G~i~~~g~ 220 (351)
T PRK11432 165 SNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTV-IVMNKGKIMQIGS 220 (351)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEE-EEEECCEEEEEcC
Confidence 999999999999999887754 443 9999999999999 9999999987664
No 53
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=1e-18 Score=158.96 Aligned_cols=154 Identities=14% Similarity=0.169 Sum_probs=113.1
Q ss_pred ccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-----hhccCCCC
Q 017295 15 RPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKSA 85 (374)
Q Consensus 15 ~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-----~~~~~~~~ 85 (374)
+.+|+++++. ..++|+|+||||||||+++|+|. ++|++|.|.++|.++.... ..|.+|..
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~ 81 (213)
T cd03259 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGL-----------ERPDSGEILIDGRDVTGVPPERRNIGMVFQDY 81 (213)
T ss_pred eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeEEEECCEEcCcCchhhccEEEEcCch
Confidence 5689988764 56999999999999999999999 7899999999997754321 24667764
Q ss_pred -ccccchHhhHhhhhccccCC---C---C--------CC---CCCceeEecC------------CCCCchhHHHHHHHHH
Q 017295 86 -VPAFLEIHDIAGLVRGAHEG---Q---G--------AF---EDPDIIHVDD------------SVDPVRDLEVISAELR 135 (374)
Q Consensus 86 -~~~~~~v~D~~gl~~~~~~~---~---~--------~~---~~~~il~l~~------------~~dP~~~l~ilde~l~ 135 (374)
++...++.|++.+....... . . .+ .+..+..+++ +.+| +++++|||++
T Consensus 82 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p--~~lllDEPt~ 159 (213)
T cd03259 82 ALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREP--SLLLLDEPLS 159 (213)
T ss_pred hhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCC--CEEEEcCCcc
Confidence 55556777777653211100 0 0 01 1112222333 5689 9999999999
Q ss_pred hhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCcee
Q 017295 136 LKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVR 182 (374)
Q Consensus 136 ~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~ 182 (374)
++|+......++.+.+..++ +.+ |+...+..+||++ .+|++|+++.
T Consensus 160 ~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v-~~l~~G~i~~ 211 (213)
T cd03259 160 ALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRI-AVMNEGRIVQ 211 (213)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEE-EEEECCEEEe
Confidence 99999999999999887654 444 9999999999999 8888888754
No 54
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.72 E-value=8.9e-19 Score=170.97 Aligned_cols=159 Identities=14% Similarity=0.093 Sum_probs=122.4
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-----hhccCCC
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS 84 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-----~~~~~~~ 84 (374)
.+.+|+++++ |..++|+||||||||||+++|+|. ..|++|.|.++|+++.... ..|.+|.
T Consensus 16 ~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl-----------~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~ 84 (353)
T TIGR03265 16 AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGL-----------ERQTAGTIYQGGRDITRLPPQKRDYGIVFQS 84 (353)
T ss_pred CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCC-----------CCCCceEEEECCEECCCCCHHHCCEEEEeCC
Confidence 3567888775 456999999999999999999999 7899999999998764322 2577887
Q ss_pred C-ccccchHhhHhhhhccccCCCC-----------------CCCCCceeEecC------------CCCCchhHHHHHHHH
Q 017295 85 A-VPAFLEIHDIAGLVRGAHEGQG-----------------AFEDPDIIHVDD------------SVDPVRDLEVISAEL 134 (374)
Q Consensus 85 ~-~~~~~~v~D~~gl~~~~~~~~~-----------------~~~~~~il~l~~------------~~dP~~~l~ilde~l 134 (374)
. +++++++.+++.+......... .+.+.....+++ +.+| +++++|||+
T Consensus 85 ~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P--~llLLDEP~ 162 (353)
T TIGR03265 85 YALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSP--GLLLLDEPL 162 (353)
T ss_pred cccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCC--CEEEEcCCc
Confidence 6 7778999999987532211000 111222223333 5789 999999999
Q ss_pred HhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 135 RLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 135 ~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
+++|.......+..+.++.++ +.+ |+..++..+||++ .+|++|+++..++.
T Consensus 163 s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i-~vl~~G~i~~~g~~ 219 (353)
T TIGR03265 163 SALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRI-VVMNHGVIEQVGTP 219 (353)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEE-EEEECCEEEEEcCH
Confidence 999999999999999887754 443 9999999999999 99999999877653
No 55
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.72 E-value=8.6e-19 Score=168.02 Aligned_cols=158 Identities=16% Similarity=0.218 Sum_probs=117.4
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh------hhhccCC
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------CQLFKPK 83 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l------~~~~~~~ 83 (374)
++.+|+++++ |..+||+|+||||||||+++|+|. ..|++|.|.++|.++... ...|.+|
T Consensus 16 ~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q 84 (303)
T TIGR01288 16 DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGM-----------ISPDRGKITVLGEPVPSRARLARVAIGVVPQ 84 (303)
T ss_pred CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEECcccHHHHhhcEEEEec
Confidence 3568988876 456999999999999999999999 789999999999765321 1246777
Q ss_pred CC-ccccchHhhHhhhhccccCCC-C-------------C---CCCCceeEecC------------CCCCchhHHHHHHH
Q 017295 84 SA-VPAFLEIHDIAGLVRGAHEGQ-G-------------A---FEDPDIIHVDD------------SVDPVRDLEVISAE 133 (374)
Q Consensus 84 ~~-~~~~~~v~D~~gl~~~~~~~~-~-------------~---~~~~~il~l~~------------~~dP~~~l~ilde~ 133 (374)
.. ++..+++.|++.+........ . . ..+..+-.+++ +.+| +++++|||
T Consensus 85 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p--~lllLDEP 162 (303)
T TIGR01288 85 FDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDP--QLLILDEP 162 (303)
T ss_pred cccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCC--CEEEEeCC
Confidence 65 555678888776432111000 0 0 01112222222 5689 99999999
Q ss_pred HHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 134 LRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 134 l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
++++|+.....+++.+.++.+++.+ |++.++..+||++ .+|++|+++..++
T Consensus 163 t~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i-~~l~~G~i~~~g~ 218 (303)
T TIGR01288 163 TTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRL-CVLESGRKIAEGR 218 (303)
T ss_pred CcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEE-EEEECCEEEEEcC
Confidence 9999999999999999988755554 9999999999999 9999999987664
No 56
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.72 E-value=8.5e-18 Score=163.81 Aligned_cols=152 Identities=26% Similarity=0.304 Sum_probs=102.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhcccc
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~~-s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~~~~ 103 (374)
..|+|||+||+|||||||.|+|.+.++ +++||+|+++..|.+.+.|.. +.++||.|+....
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~-----------------f~lIDTgGl~~~~- 65 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE-----------------FILIDTGGLDDGD- 65 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce-----------------EEEEECCCCCcCC-
Confidence 469999999999999999999999877 999999999999999998865 7899999994321
Q ss_pred CCCCCCCCCceeEecCCCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCccchHHHHHHHHHHHHHHhCCCceec
Q 017295 104 EGQGAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRL 183 (374)
Q Consensus 104 ~~~~~~~~~~il~l~~~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~H~~~~~~~~~d~v~~~L~~G~iv~~ 183 (374)
+ ..+...+.+.+ ..+..-+|-+ .++-+|+
T Consensus 66 -------------------~-------------------~~l~~~i~~Qa--------~~Ai~eADvi-lfvVD~~---- 94 (444)
T COG1160 66 -------------------E-------------------DELQELIREQA--------LIAIEEADVI-LFVVDGR---- 94 (444)
T ss_pred -------------------c-------------------hHHHHHHHHHH--------HHHHHhCCEE-EEEEeCC----
Confidence 0 00111111111 0112223333 3333333
Q ss_pred cCCChhHHHHHHhccccccCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCC
Q 017295 184 GDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADM 253 (374)
Q Consensus 184 ~~~~~~~~~~l~~~~~~~~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l 253 (374)
.-++++|....+.+. ...||+|+|+||+|... ..+...+++... ..++++|||.++.++.+|
T Consensus 95 ~Git~~D~~ia~~Lr-~~~kpviLvvNK~D~~~------~e~~~~efyslG-~g~~~~ISA~Hg~Gi~dL 156 (444)
T COG1160 95 EGITPADEEIAKILR-RSKKPVILVVNKIDNLK------AEELAYEFYSLG-FGEPVPISAEHGRGIGDL 156 (444)
T ss_pred CCCCHHHHHHHHHHH-hcCCCEEEEEEcccCch------hhhhHHHHHhcC-CCCceEeehhhccCHHHH
Confidence 234666666655555 55799999999997531 122444555432 446899999999887766
No 57
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=1.7e-18 Score=158.26 Aligned_cols=158 Identities=16% Similarity=0.138 Sum_probs=115.6
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh------hhhccCC
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------CQLFKPK 83 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l------~~~~~~~ 83 (374)
++.+|+++++ |..+||+|+||||||||+++|+|. ..|++|.|.++|.++... ...|.+|
T Consensus 12 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (220)
T cd03265 12 DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTL-----------LKPTSGRATVAGHDVVREPREVRRRIGIVFQ 80 (220)
T ss_pred CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEecCcChHHHhhcEEEecC
Confidence 3568998886 456999999999999999999999 789999999998765321 1246677
Q ss_pred CC-ccccchHhhHhhhhccccCC-C-----C--------CC---CCCceeEecC------------CCCCchhHHHHHHH
Q 017295 84 SA-VPAFLEIHDIAGLVRGAHEG-Q-----G--------AF---EDPDIIHVDD------------SVDPVRDLEVISAE 133 (374)
Q Consensus 84 ~~-~~~~~~v~D~~gl~~~~~~~-~-----~--------~~---~~~~il~l~~------------~~dP~~~l~ilde~ 133 (374)
.. ++..+++.|+..+....... . . .+ .+..+-.+++ +.+| +++++|||
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p--~llllDEP 158 (220)
T cd03265 81 DLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRP--EVLFLDEP 158 (220)
T ss_pred CccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCC--CEEEEcCC
Confidence 65 45556777777553211100 0 0 11 1112222332 5689 99999999
Q ss_pred HHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 134 LRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 134 l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+.++|.......++.+.+..++ +.+ |+...+..+||++ .+|++|+++..++
T Consensus 159 t~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i-~~l~~G~i~~~~~ 215 (220)
T cd03265 159 TIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRV-AIIDHGRIIAEGT 215 (220)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE-EEEeCCEEEEeCC
Confidence 9999999999999999887755 444 9999999999999 8999999876543
No 58
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.71 E-value=1e-18 Score=167.25 Aligned_cols=158 Identities=16% Similarity=0.177 Sum_probs=119.2
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh----h--hhccCC
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----C--QLFKPK 83 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l----~--~~~~~~ 83 (374)
++.+|+++++. ..+||+|+||||||||+++|+|. ..|++|.|.++|.++... . ..|.||
T Consensus 14 ~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl-----------~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q 82 (301)
T TIGR03522 14 TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGY-----------LPPDSGSVQVCGEDVLQNPKEVQRNIGYLPE 82 (301)
T ss_pred CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEEcccChHHHHhceEEecC
Confidence 45689988764 55999999999999999999999 889999999999876431 1 257777
Q ss_pred CC-ccccchHhhHhhhhccccCCC------C------C-----CCCCceeEecC------------CCCCchhHHHHHHH
Q 017295 84 SA-VPAFLEIHDIAGLVRGAHEGQ------G------A-----FEDPDIIHVDD------------SVDPVRDLEVISAE 133 (374)
Q Consensus 84 ~~-~~~~~~v~D~~gl~~~~~~~~------~------~-----~~~~~il~l~~------------~~dP~~~l~ilde~ 133 (374)
.. +++.+++.|++.+........ . . ..+..+-.+++ +.+| +++++|||
T Consensus 83 ~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p--~lliLDEP 160 (301)
T TIGR03522 83 HNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDP--KVLILDEP 160 (301)
T ss_pred CCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCC--CEEEEcCC
Confidence 75 667788888876543221100 0 0 11112222222 5789 99999999
Q ss_pred HHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 134 LRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 134 l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
++++|+......++.+.++.+ +.+ |++.++..+||++ .+|++|+++..++.
T Consensus 161 t~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~~~~~~~d~i-~~l~~G~i~~~g~~ 216 (301)
T TIGR03522 161 TTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQEVEAICDRV-IIINKGKIVADKKL 216 (301)
T ss_pred cccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHHhCCEE-EEEECCEEEEeCCH
Confidence 999999999999999988753 444 9999999999999 99999999876653
No 59
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.71 E-value=1.1e-18 Score=170.57 Aligned_cols=159 Identities=16% Similarity=0.177 Sum_probs=121.9
Q ss_pred ccccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh-----------h
Q 017295 13 AERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----------C 77 (374)
Q Consensus 13 ~~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l-----------~ 77 (374)
+.+.+|+++++. ..++|+|+||||||||+++|+|. ++|++|.|.++|.++..+ .
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl-----------~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~ 72 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRL-----------IEPTAGQIFIDGENIMKQSPVELREVRRKK 72 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCC-----------CCCCceEEEECCEECCcCCHHHHHHHHhCc
Confidence 456788988864 55999999999999999999999 889999999999876431 1
Q ss_pred hhccCCCC-ccccchHhhHhhhhccccCCCC-----------------CCCCCceeEecC------------CCCCchhH
Q 017295 78 QLFKPKSA-VPAFLEIHDIAGLVRGAHEGQG-----------------AFEDPDIIHVDD------------SVDPVRDL 127 (374)
Q Consensus 78 ~~~~~~~~-~~~~~~v~D~~gl~~~~~~~~~-----------------~~~~~~il~l~~------------~~dP~~~l 127 (374)
..|.+|.. +++++++.+++.+......... .+.+.....+++ +.+| ++
T Consensus 73 i~~v~Q~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p--~i 150 (363)
T TIGR01186 73 IGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEP--DI 150 (363)
T ss_pred EEEEECCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCC--CE
Confidence 25777776 6777899998877533211000 111122222333 6789 99
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 128 EVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 128 ~ilde~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+++|||+.++|+.....+.+.+.++.++ +.+ |++.++..+||++ .+|++|+++..++
T Consensus 151 LLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI-~vl~~G~iv~~g~ 213 (363)
T TIGR01186 151 LLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRI-VIMKAGEIVQVGT 213 (363)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE-EEEeCCEEEeeCC
Confidence 9999999999999999999998887644 444 9999999999999 9999999987664
No 60
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.71 E-value=2.1e-18 Score=158.85 Aligned_cols=158 Identities=14% Similarity=0.196 Sum_probs=115.7
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh--------hhhcc
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------CQLFK 81 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l--------~~~~~ 81 (374)
++.+|+++++ |..+||+|+||||||||+++|+|. ..|++|.|.++|.++... ...|.
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (232)
T cd03218 12 KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGL-----------VKPDSGKILLDGQDITKLPMHKRARLGIGYL 80 (232)
T ss_pred CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEecccCCHhHHHhccEEEe
Confidence 3568988775 456999999999999999999999 789999999999765321 12466
Q ss_pred CCCC-ccccchHhhHhhhhccccCCC-C-------------CC---CCCceeEecC------------CCCCchhHHHHH
Q 017295 82 PKSA-VPAFLEIHDIAGLVRGAHEGQ-G-------------AF---EDPDIIHVDD------------SVDPVRDLEVIS 131 (374)
Q Consensus 82 ~~~~-~~~~~~v~D~~gl~~~~~~~~-~-------------~~---~~~~il~l~~------------~~dP~~~l~ild 131 (374)
+|.. +++.+++.|++.+........ . .+ .+..+-.+++ +.+| +++++|
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p--~llllD 158 (232)
T cd03218 81 PQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNP--KFLLLD 158 (232)
T ss_pred cCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCC--CEEEec
Confidence 7765 555678888776532111100 0 00 1111122222 5689 999999
Q ss_pred HHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 132 AELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 132 e~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
||+.++|....+...+.+.+..+.+.+ |+++.+..+||++ .+|++|+++..++
T Consensus 159 EPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i-~~l~~G~i~~~~~ 216 (232)
T cd03218 159 EPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRA-YIIYEGKVLAEGT 216 (232)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEE-EEEECCeEEEEeC
Confidence 999999999999999999887655544 9999999999999 8999999876554
No 61
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.71 E-value=1.6e-18 Score=170.25 Aligned_cols=158 Identities=15% Similarity=0.145 Sum_probs=119.8
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-----hhccCCC
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS 84 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-----~~~~~~~ 84 (374)
++.+|+++++ |..++|+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.+|.
T Consensus 15 ~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl-----------~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~ 83 (369)
T PRK11000 15 DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL-----------EDITSGDLFIGEKRMNDVPPAERGVGMVFQS 83 (369)
T ss_pred CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCceEEEECCEECCCCCHhHCCEEEEeCC
Confidence 3568888876 456999999999999999999999 8899999999998764322 2577777
Q ss_pred C-ccccchHhhHhhhhccccCCC------C-----------CCCCCceeEecC------------CCCCchhHHHHHHHH
Q 017295 85 A-VPAFLEIHDIAGLVRGAHEGQ------G-----------AFEDPDIIHVDD------------SVDPVRDLEVISAEL 134 (374)
Q Consensus 85 ~-~~~~~~v~D~~gl~~~~~~~~------~-----------~~~~~~il~l~~------------~~dP~~~l~ilde~l 134 (374)
. +++.+++.|++.+........ . .+.+..+..+++ +.+| +++++|||+
T Consensus 84 ~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P--~lLLLDEPt 161 (369)
T PRK11000 84 YALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEP--SVFLLDEPL 161 (369)
T ss_pred cccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCC--CEEEEeCCc
Confidence 5 666789999887643211000 0 111222223333 5789 999999999
Q ss_pred HhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 135 RLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 135 ~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+++|....+.+++.+.++.++ +.+ |+..++..+||++ .+|++|+++..++
T Consensus 162 s~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i-~vl~~G~i~~~g~ 217 (369)
T PRK11000 162 SNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKI-VVLDAGRVAQVGK 217 (369)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEEcC
Confidence 999999999999999887654 444 9999999999999 9999999987654
No 62
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.71 E-value=9.4e-17 Score=158.30 Aligned_cols=65 Identities=40% Similarity=0.744 Sum_probs=56.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhccccC
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~~~~~ 104 (374)
..|||||+||||||||||+|++.++.+++|||||+.|+.|.+.+.+.+ .+.+.|+||++.+++.
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~----------------~i~~vDtPGi~~~a~~ 223 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDER----------------SFVVADIPGLIEGASE 223 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCc----------------EEEEEeCCCccccccc
Confidence 349999999999999999999999989999999999999999886421 2789999999877654
Q ss_pred C
Q 017295 105 G 105 (374)
Q Consensus 105 ~ 105 (374)
+
T Consensus 224 ~ 224 (390)
T PRK12298 224 G 224 (390)
T ss_pred h
Confidence 3
No 63
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.71 E-value=9.6e-18 Score=151.26 Aligned_cols=156 Identities=20% Similarity=0.253 Sum_probs=112.6
Q ss_pred cccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-------h-hccCC
Q 017295 16 PILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------Q-LFKPK 83 (374)
Q Consensus 16 ~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-------~-~~~~~ 83 (374)
.+|++|++ |..+||||++|||||||.++|+|+ .+|+.|.|.++|.++.... . -+++|
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl-----------~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQ 89 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGL-----------EKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQ 89 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcc-----------cCCCCceEEECCcccCccccchhhccceeEEec
Confidence 58898886 566999999999999999999999 7899999999997654321 1 12223
Q ss_pred ---CCccccchHhhHhhhhccccC---CC------------C-CCCCCceeEecC------------CCCCchhHHHHHH
Q 017295 84 ---SAVPAFLEIHDIAGLVRGAHE---GQ------------G-AFEDPDIIHVDD------------SVDPVRDLEVISA 132 (374)
Q Consensus 84 ---~~~~~~~~v~D~~gl~~~~~~---~~------------~-~~~~~~il~l~~------------~~dP~~~l~ilde 132 (374)
..+.+..++.+.+.-....+. .. . .+.+.....+++ +.+| +++++||
T Consensus 90 Dp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~P--klLIlDE 167 (252)
T COG1124 90 DPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEP--KLLILDE 167 (252)
T ss_pred CCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCC--CEEEecC
Confidence 235555555554433211100 00 0 111222223333 5678 9999999
Q ss_pred HHHhhcHHHHHHHHHHHHHHHHccC-c-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 133 ELRLKDIEFMERRIEDVEKSMKRSN-D-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 133 ~l~~~D~~~~~~~~~~i~~~~~~~~-~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
|++.+|......+++.+.++.++.+ + ||+..+..+|||| .+|++|+++...+
T Consensus 168 ptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi-~Vm~~G~ivE~~~ 225 (252)
T COG1124 168 PTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRI-AVMDNGQIVEIGP 225 (252)
T ss_pred chhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhhe-eeeeCCeEEEeec
Confidence 9999999999999999988876543 2 9999999999999 9999999987654
No 64
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.71 E-value=1.8e-18 Score=169.13 Aligned_cols=157 Identities=14% Similarity=0.217 Sum_probs=120.7
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCce--eEEEeCCcchhhhh-----hhccCC
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNE--ARVNIPDERFEWLC-----QLFKPK 83 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~--G~i~~~g~~~~~l~-----~~~~~~ 83 (374)
+.+|+++++ |..++|+|||||||||||++|+|+ ..|++ |.|.++|.++.... ..|.+|
T Consensus 18 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl-----------~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ 86 (362)
T TIGR03258 18 NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGF-----------VKAAGLTGRIAIADRDLTHAPPHKRGLALLFQ 86 (362)
T ss_pred eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCCEEEEECCEECCCCCHHHCCEEEEEC
Confidence 468888775 456999999999999999999999 78999 99999998764322 257777
Q ss_pred CC-ccccchHhhHhhhhccccCCCC-----------------CCCCCceeEecC------------CCCCchhHHHHHHH
Q 017295 84 SA-VPAFLEIHDIAGLVRGAHEGQG-----------------AFEDPDIIHVDD------------SVDPVRDLEVISAE 133 (374)
Q Consensus 84 ~~-~~~~~~v~D~~gl~~~~~~~~~-----------------~~~~~~il~l~~------------~~dP~~~l~ilde~ 133 (374)
.. +++++++.+++.+......... .+.+..+-.+++ +.+| +++++|||
T Consensus 87 ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P--~llLLDEP 164 (362)
T TIGR03258 87 NYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEP--DVLLLDEP 164 (362)
T ss_pred CcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCC--CEEEEcCc
Confidence 76 6778899999876432111000 111222223333 5789 99999999
Q ss_pred HHhhcHHHHHHHHHHHHHHHHc--cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 134 LRLKDIEFMERRIEDVEKSMKR--SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 134 l~~~D~~~~~~~~~~i~~~~~~--~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
++++|......++..+.++.++ +.+ |+..++..+||++ .+|++|+++..++
T Consensus 165 ~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri-~vl~~G~i~~~g~ 222 (362)
T TIGR03258 165 LSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKA-GIMKDGRLAAHGE 222 (362)
T ss_pred cccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEEcC
Confidence 9999999999999999887765 444 9999999999999 9999999987764
No 65
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.70 E-value=2.8e-18 Score=156.38 Aligned_cols=152 Identities=13% Similarity=0.122 Sum_probs=110.9
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh--------h--hhc
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------C--QLF 80 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l--------~--~~~ 80 (374)
+.+|+++++ |..+||+|+||||||||+++|+|. .+|++|.|.++|.++... . ..|
T Consensus 16 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~ 84 (216)
T TIGR00960 16 QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGI-----------EKPTRGKIRFNGQDLTRLRGREIPFLRRHIGM 84 (216)
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEehhhcChhHHHHHHHhceE
Confidence 468998875 456999999999999999999999 789999999999876321 1 246
Q ss_pred cCCCC-ccccchHhhHhhhhccccCCC------C-----------CCCCCceeEecC------------CCCCchhHHHH
Q 017295 81 KPKSA-VPAFLEIHDIAGLVRGAHEGQ------G-----------AFEDPDIIHVDD------------SVDPVRDLEVI 130 (374)
Q Consensus 81 ~~~~~-~~~~~~v~D~~gl~~~~~~~~------~-----------~~~~~~il~l~~------------~~dP~~~l~il 130 (374)
.+|.. ++..+++.|++.+........ . .+.+..+..+++ +.+| +++++
T Consensus 85 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p--~llll 162 (216)
T TIGR00960 85 VFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKP--PLLLA 162 (216)
T ss_pred EecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCC--CEEEE
Confidence 67765 555678888776532111000 0 111122223333 5689 99999
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCc
Q 017295 131 SAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKD 180 (374)
Q Consensus 131 de~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~i 180 (374)
|||++++|........+.+.+..+++.+ |+...+..+||++ .+|++|++
T Consensus 163 DEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i-~~l~~G~i 216 (216)
T TIGR00960 163 DEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRT-LTLSRGRL 216 (216)
T ss_pred eCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEE-EEEeCCcC
Confidence 9999999999999999999887655544 9999998999998 77877753
No 66
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.70 E-value=9.1e-18 Score=164.33 Aligned_cols=158 Identities=16% Similarity=0.115 Sum_probs=124.6
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh--------hhcc
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC--------QLFK 81 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~--------~~~~ 81 (374)
+..++++|++ |...||+|.||||||||+++|.|. +.|++|+|.++|+.+...+ ..++
T Consensus 16 ~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~-----------~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMV 84 (501)
T COG3845 16 GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGL-----------YQPDSGEIRVDGKEVRIKSPRDAIRLGIGMV 84 (501)
T ss_pred CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCc-----------ccCCcceEEECCEEeccCCHHHHHHcCCcEE
Confidence 5567788876 455999999999999999999999 8999999999999864322 2466
Q ss_pred CCCC-ccccchHhhHhhhhccccCCCC-----------------CCCCCceeEecC---------------CCCCchhHH
Q 017295 82 PKSA-VPAFLEIHDIAGLVRGAHEGQG-----------------AFEDPDIIHVDD---------------SVDPVRDLE 128 (374)
Q Consensus 82 ~~~~-~~~~~~v~D~~gl~~~~~~~~~-----------------~~~~~~il~l~~---------------~~dP~~~l~ 128 (374)
.|.+ +.+.+++.+++-++.....+.. .+.-++--.+.+ ..+| +++
T Consensus 85 hQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a--~iL 162 (501)
T COG3845 85 HQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGA--RLL 162 (501)
T ss_pred eeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCC--CEE
Confidence 6766 6778999999988765432211 222222222222 4577 999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 129 VISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 129 ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
++|||++.+-+...+++...++.+.+.|++ |-++++.++||++ .+|+.|+++...+
T Consensus 163 ILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrv-TVLR~Gkvvgt~~ 223 (501)
T COG3845 163 ILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRV-TVLRRGKVVGTVD 223 (501)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCee-EEEeCCeEEeeec
Confidence 999999999999999999999999988876 9999999999999 9999999875544
No 67
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=2.9e-18 Score=156.77 Aligned_cols=157 Identities=19% Similarity=0.208 Sum_probs=114.3
Q ss_pred ccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh--hhccCCCC-cc
Q 017295 15 RPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC--QLFKPKSA-VP 87 (374)
Q Consensus 15 ~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~--~~~~~~~~-~~ 87 (374)
+.+|+++++. ..+||+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.+|.. ++
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~ 85 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGL-----------ERPTSGEVLVDGEPVTGPGPDRGYVFQQDALL 85 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEECccccCcEEEEecccccc
Confidence 5789988764 45999999999999999999999 7899999999997764322 24666664 45
Q ss_pred ccchHhhHhhhhccccC---CC---C--------CC---CCCceeEecC------------CCCCchhHHHHHHHHHhhc
Q 017295 88 AFLEIHDIAGLVRGAHE---GQ---G--------AF---EDPDIIHVDD------------SVDPVRDLEVISAELRLKD 138 (374)
Q Consensus 88 ~~~~v~D~~gl~~~~~~---~~---~--------~~---~~~~il~l~~------------~~dP~~~l~ilde~l~~~D 138 (374)
...++.++..+...... .. . .+ .+..+..+++ +.+| +++++|||++++|
T Consensus 86 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p--~lllLDEPt~~LD 163 (220)
T cd03293 86 PWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDP--DVLLLDEPFSALD 163 (220)
T ss_pred cCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCC--CEEEECCCCCCCC
Confidence 55677777655322110 00 0 11 1122223333 5689 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHh--CCCceeccC
Q 017295 139 IEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQ--DGKDVRLGD 185 (374)
Q Consensus 139 ~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~--~G~iv~~~~ 185 (374)
+.....+++.+.+..++ +.+ |+...+..+||++ .+|+ +|+++...+
T Consensus 164 ~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i-~~l~~~~G~i~~~~~ 217 (220)
T cd03293 164 ALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRV-VVLSARPGRIVAEVE 217 (220)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEE-EEEECCCCEEEEEEE
Confidence 99999999999887543 444 9999999999999 8888 688876543
No 68
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.70 E-value=2.3e-18 Score=168.03 Aligned_cols=158 Identities=13% Similarity=0.168 Sum_probs=120.7
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-----hhccCCC
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS 84 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-----~~~~~~~ 84 (374)
++.+|+++++ |..++|+|+||||||||+++|+|. .+|++|.|.++|.++.... ..|.+|.
T Consensus 14 ~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl-----------~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~ 82 (353)
T PRK10851 14 RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGL-----------EHQTSGHIRFHGTDVSRLHARDRKVGFVFQH 82 (353)
T ss_pred CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEECCCCCHHHCCEEEEecC
Confidence 3568888865 456999999999999999999999 8899999999998764322 2577777
Q ss_pred C-ccccchHhhHhhhhcccc---CCCC------------------CCCCCceeEecC------------CCCCchhHHHH
Q 017295 85 A-VPAFLEIHDIAGLVRGAH---EGQG------------------AFEDPDIIHVDD------------SVDPVRDLEVI 130 (374)
Q Consensus 85 ~-~~~~~~v~D~~gl~~~~~---~~~~------------------~~~~~~il~l~~------------~~dP~~~l~il 130 (374)
. +++.+++.+++.+..... .+.. .+.+..+..+++ +.+| +++++
T Consensus 83 ~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P--~llLL 160 (353)
T PRK10851 83 YALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEP--QILLL 160 (353)
T ss_pred cccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCC--CEEEE
Confidence 6 677789999987753211 0100 111222222333 5789 99999
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 131 SAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 131 de~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
|||++++|.......++.+.++.++ +.+ |++.++..+||++ .+|++|+++..++
T Consensus 161 DEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri-~vl~~G~i~~~g~ 220 (353)
T PRK10851 161 DEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRV-VVMSQGNIEQAGT 220 (353)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEEcC
Confidence 9999999999999999999887755 443 9999999999999 9999999987654
No 69
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.70 E-value=9.6e-17 Score=155.10 Aligned_cols=65 Identities=42% Similarity=0.715 Sum_probs=56.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhccccC
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~~~~~ 104 (374)
..|+|||.||||||||||+|++..+.+++|||||+.|+.|.+.+++. ..+++.|+||+..+++.
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~----------------~~~~i~D~PGli~~a~~ 221 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDG----------------RSFVIADIPGLIEGASE 221 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCc----------------eEEEEEeCCCcccCCcc
Confidence 34999999999999999999999889999999999999999988651 12788999999877665
Q ss_pred C
Q 017295 105 G 105 (374)
Q Consensus 105 ~ 105 (374)
+
T Consensus 222 ~ 222 (329)
T TIGR02729 222 G 222 (329)
T ss_pred c
Confidence 4
No 70
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=5e-18 Score=154.03 Aligned_cols=155 Identities=17% Similarity=0.241 Sum_probs=112.3
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh---hhhccCCCC-
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL---CQLFKPKSA- 85 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l---~~~~~~~~~- 85 (374)
++.+|+++++ |..++|+|+||||||||+++|+|. .+|++|.|.++|.++... ...|.+|..
T Consensus 12 ~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~ 80 (210)
T cd03269 12 RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGI-----------ILPDSGEVLFDGKPLDIAARNRIGYLPEERG 80 (210)
T ss_pred CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCCchhHHHHccEEEeccCCc
Confidence 3468888775 456999999999999999999999 789999999999876421 124666664
Q ss_pred ccccchHhhHhhhhccccCCCC--------------CC---CCCceeEecC------------CCCCchhHHHHHHHHHh
Q 017295 86 VPAFLEIHDIAGLVRGAHEGQG--------------AF---EDPDIIHVDD------------SVDPVRDLEVISAELRL 136 (374)
Q Consensus 86 ~~~~~~v~D~~gl~~~~~~~~~--------------~~---~~~~il~l~~------------~~dP~~~l~ilde~l~~ 136 (374)
++..+++.|++.+......... .+ .+..+..+++ +.+| +++++|||+++
T Consensus 81 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p--~~lllDEP~~~ 158 (210)
T cd03269 81 LYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDP--ELLILDEPFSG 158 (210)
T ss_pred CCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCC--CEEEEeCCCcC
Confidence 5555677777655321110000 00 0111112222 5688 99999999999
Q ss_pred hcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCcee
Q 017295 137 KDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVR 182 (374)
Q Consensus 137 ~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~ 182 (374)
+|+.......+.+.+..+++.+ |+...+..+||++ .+|++|+++.
T Consensus 159 LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i-~~l~~g~i~~ 208 (210)
T cd03269 159 LDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRV-LLLNKGRAVL 208 (210)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEE-EEEeCCEEEe
Confidence 9999999999999887655544 9999999999999 8888888753
No 71
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=2.3e-18 Score=167.73 Aligned_cols=158 Identities=18% Similarity=0.205 Sum_probs=118.5
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh----------hhh
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----------CQL 79 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l----------~~~ 79 (374)
.+.+|+++++. ..+||+|+||||||||+++|+|. ..|++|.|.++|.++..+ ...
T Consensus 17 ~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl-----------~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig 85 (343)
T PRK11153 17 TIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLL-----------ERPTSGRVLVDGQDLTALSEKELRKARRQIG 85 (343)
T ss_pred ceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCceEEEECCEECCcCCHHHHHHHhcCEE
Confidence 35789998864 55999999999999999999999 889999999999876421 124
Q ss_pred ccCCCC-ccccchHhhHhhhhccccCCC------C-----------CCCCCceeEecC------------CCCCchhHHH
Q 017295 80 FKPKSA-VPAFLEIHDIAGLVRGAHEGQ------G-----------AFEDPDIIHVDD------------SVDPVRDLEV 129 (374)
Q Consensus 80 ~~~~~~-~~~~~~v~D~~gl~~~~~~~~------~-----------~~~~~~il~l~~------------~~dP~~~l~i 129 (374)
|.+|.. +++.+++.|++.+......-. . .+.+..+..+++ +.+| ++++
T Consensus 86 ~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p--~iLl 163 (343)
T PRK11153 86 MIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNP--KVLL 163 (343)
T ss_pred EEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCC--CEEE
Confidence 667765 556678888876642211000 0 111122223333 5789 9999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 130 ISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 130 lde~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+|||++++|+.....+++.+.++.++ +.+ |++..+..+||++ .+|++|+++..++
T Consensus 164 LDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v-~~l~~G~i~~~g~ 224 (343)
T PRK11153 164 CDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRV-AVIDAGRLVEQGT 224 (343)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEEcC
Confidence 99999999999999999999887654 444 9999999999999 9999999987654
No 72
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.70 E-value=2.3e-18 Score=169.09 Aligned_cols=158 Identities=9% Similarity=0.191 Sum_probs=121.2
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-----hhccCCC
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS 84 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-----~~~~~~~ 84 (374)
++.+|+++++. ..++|+|+||||||||+++|+|. .+|++|.|.++|.++..+. ..|.+|.
T Consensus 26 ~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl-----------~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~ 94 (375)
T PRK09452 26 GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGF-----------ETPDSGRIMLDGQDITHVPAENRHVNTVFQS 94 (375)
T ss_pred CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCceEEEECCEECCCCCHHHCCEEEEecC
Confidence 35678887764 45999999999999999999999 7899999999998764322 2577777
Q ss_pred C-ccccchHhhHhhhhccccCCCC-----------------CCCCCceeEecC------------CCCCchhHHHHHHHH
Q 017295 85 A-VPAFLEIHDIAGLVRGAHEGQG-----------------AFEDPDIIHVDD------------SVDPVRDLEVISAEL 134 (374)
Q Consensus 85 ~-~~~~~~v~D~~gl~~~~~~~~~-----------------~~~~~~il~l~~------------~~dP~~~l~ilde~l 134 (374)
. +++++++.|++.+......... .+.+..+..+++ +.+| +++++|||+
T Consensus 95 ~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P--~llLLDEP~ 172 (375)
T PRK09452 95 YALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKP--KVLLLDESL 172 (375)
T ss_pred cccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCC--CEEEEeCCC
Confidence 6 7778999999876532111000 111222222333 5789 999999999
Q ss_pred HhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 135 RLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 135 ~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+++|......++..+.++.++ +.+ |+..++..++|++ .+|++|+++..++
T Consensus 173 s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri-~vl~~G~i~~~g~ 228 (375)
T PRK09452 173 SALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRI-VVMRDGRIEQDGT 228 (375)
T ss_pred CcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEEcC
Confidence 999999999999999887764 443 9999999999999 9999999987654
No 73
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.70 E-value=3.1e-18 Score=158.15 Aligned_cols=157 Identities=20% Similarity=0.208 Sum_probs=115.7
Q ss_pred ccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh--------hhhccC
Q 017295 15 RPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------CQLFKP 82 (374)
Q Consensus 15 ~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l--------~~~~~~ 82 (374)
+.+|+++++. ..+||+|+||||||||+++|+|. +.|++|.|.++|.++... ...|.+
T Consensus 13 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 81 (236)
T cd03219 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGF-----------LRPTSGSVLFDGEDITGLPPHEIARLGIGRTF 81 (236)
T ss_pred EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCC-----------CCCCCceEEECCEECCCCCHHHHHhcCEEEEe
Confidence 4688888765 46999999999999999999999 789999999999765321 124667
Q ss_pred CCC-ccccchHhhHhhhhccccCCC----------------C--------CC---CCCceeEecC------------CCC
Q 017295 83 KSA-VPAFLEIHDIAGLVRGAHEGQ----------------G--------AF---EDPDIIHVDD------------SVD 122 (374)
Q Consensus 83 ~~~-~~~~~~v~D~~gl~~~~~~~~----------------~--------~~---~~~~il~l~~------------~~d 122 (374)
|.. +++.+++.|++.+........ . .+ .+..+-.+++ +.+
T Consensus 82 q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~ 161 (236)
T cd03219 82 QIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATD 161 (236)
T ss_pred cccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 765 556678888776542211100 0 00 1111112222 568
Q ss_pred CchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 123 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 123 P~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
| +++++|||+.++|.......++.+.+..+++.+ |++..+..+||++ .+|++|+++..++
T Consensus 162 p--~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i-~~l~~G~i~~~~~ 226 (236)
T cd03219 162 P--KLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRV-TVLDQGRVIAEGT 226 (236)
T ss_pred C--CEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEE-EEEeCCEEEeecC
Confidence 9 999999999999999999999999887655544 9999999999999 8999999876543
No 74
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=3.2e-18 Score=158.48 Aligned_cols=158 Identities=13% Similarity=0.148 Sum_probs=115.5
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-----hhccCCC
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS 84 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-----~~~~~~~ 84 (374)
++.+|+++++ |..+||+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.+|.
T Consensus 14 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 82 (239)
T cd03296 14 DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGL-----------ERPDSGTILFGGEDATDVPVQERNVGFVFQH 82 (239)
T ss_pred CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEECCcCCccccceEEEecC
Confidence 3568988876 456999999999999999999999 7899999999997653221 2466776
Q ss_pred C-ccccchHhhHhhhhccccCC----C------C--------C---CCCCceeEecC------------CCCCchhHHHH
Q 017295 85 A-VPAFLEIHDIAGLVRGAHEG----Q------G--------A---FEDPDIIHVDD------------SVDPVRDLEVI 130 (374)
Q Consensus 85 ~-~~~~~~v~D~~gl~~~~~~~----~------~--------~---~~~~~il~l~~------------~~dP~~~l~il 130 (374)
. ++...++.|++.+....... . . . +.+..+..+++ +.+| +++++
T Consensus 83 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p--~llll 160 (239)
T cd03296 83 YALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEP--KVLLL 160 (239)
T ss_pred CcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCC--CEEEE
Confidence 5 45557788877653211100 0 0 0 01111222222 5689 99999
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 131 SAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 131 de~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
|||++++|+......++.+.++.++ +.+ |+...+..+||++ .+|++|+++..++
T Consensus 161 DEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i-~~l~~G~i~~~~~ 220 (239)
T cd03296 161 DEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRV-VVMNKGRIEQVGT 220 (239)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEE-EEEECCeEEEecC
Confidence 9999999999999999999887754 444 9999999999999 8899999876553
No 75
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.69 E-value=3.4e-18 Score=154.89 Aligned_cols=155 Identities=14% Similarity=0.159 Sum_probs=113.8
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh-----hhhccCCC
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQLFKPKS 84 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l-----~~~~~~~~ 84 (374)
++.+|+++++. ..++|+|+||||||||+++|+|. .+|++|.|.++|.++... ...|.+|.
T Consensus 12 ~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 80 (208)
T cd03268 12 KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGL-----------IKPDSGEITFDGKSYQKNIEALRRIGALIEA 80 (208)
T ss_pred CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------cCCCceEEEECCCcccchHHHHhhEEEecCC
Confidence 35688888764 56999999999999999999999 789999999999876321 12466776
Q ss_pred C-ccccchHhhHhhhhccccC-CCC---------CC---CCCceeEecC------------CCCCchhHHHHHHHHHhhc
Q 017295 85 A-VPAFLEIHDIAGLVRGAHE-GQG---------AF---EDPDIIHVDD------------SVDPVRDLEVISAELRLKD 138 (374)
Q Consensus 85 ~-~~~~~~v~D~~gl~~~~~~-~~~---------~~---~~~~il~l~~------------~~dP~~~l~ilde~l~~~D 138 (374)
. +++..++.|++.+...... ... .+ .+..+-.+++ +.+| +++++|||++++|
T Consensus 81 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p--~llllDEPt~~LD 158 (208)
T cd03268 81 PGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNP--DLLILDEPTNGLD 158 (208)
T ss_pred CccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCC--CEEEECCCcccCC
Confidence 5 5666788888765422111 000 00 1111112222 5688 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCcee
Q 017295 139 IEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVR 182 (374)
Q Consensus 139 ~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~ 182 (374)
+......++.+.+..+++.+ |+...+..+||++ .+|++|+++.
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v-~~l~~g~i~~ 206 (208)
T cd03268 159 PDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRI-GIINKGKLIE 206 (208)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEE-EEEECCEEEe
Confidence 99999999999887655544 9999999999999 8889888764
No 76
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.69 E-value=3.7e-18 Score=154.41 Aligned_cols=153 Identities=18% Similarity=0.167 Sum_probs=110.8
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh----hhhccCCCC-
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----CQLFKPKSA- 85 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l----~~~~~~~~~- 85 (374)
+.+|+++++ |..++|+|+||||||||+++|+|. ..|++|.|.++|.++... ...|.+|..
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~ 81 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGL-----------IKESSGSILLNGKPIKAKERRKSIGYVMQDVD 81 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCEEhhhHHhhcceEEEecChh
Confidence 568888775 456999999999999999999999 789999999999876321 124666663
Q ss_pred -ccccchHhhHhhhhccccCCC--C-----------CCCCCceeEecC------------CCCCchhHHHHHHHHHhhcH
Q 017295 86 -VPAFLEIHDIAGLVRGAHEGQ--G-----------AFEDPDIIHVDD------------SVDPVRDLEVISAELRLKDI 139 (374)
Q Consensus 86 -~~~~~~v~D~~gl~~~~~~~~--~-----------~~~~~~il~l~~------------~~dP~~~l~ilde~l~~~D~ 139 (374)
.....++.|+..+........ . .+.+..+-.+++ +.+| +++++|||++++|+
T Consensus 82 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p--~llllDEPt~~LD~ 159 (205)
T cd03226 82 YQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGK--DLLIFDEPTSGLDY 159 (205)
T ss_pred hhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCC--CEEEEeCCCccCCH
Confidence 223457788776532111100 0 111222222333 5689 99999999999999
Q ss_pred HHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCce
Q 017295 140 EFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDV 181 (374)
Q Consensus 140 ~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv 181 (374)
......++.+.+..+++.+ |++..+..+||++ .+|++|+++
T Consensus 160 ~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i-~~l~~G~iv 205 (205)
T cd03226 160 KNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRV-LLLANGAIV 205 (205)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEE-EEEECCEEC
Confidence 9999999999887655544 9999998999999 888888753
No 77
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.69 E-value=4.9e-18 Score=155.32 Aligned_cols=158 Identities=17% Similarity=0.185 Sum_probs=115.3
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh------h--hhcc
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------C--QLFK 81 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l------~--~~~~ 81 (374)
++.+|+++++ |..+||+|+||||||||+++|+|. +.|+.|.|.++|.++... . ..|.
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (222)
T cd03224 12 KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGL-----------LPPRSGSIRFDGRDITGLPPHERARAGIGYV 80 (222)
T ss_pred CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEEcCCCCHHHHHhcCeEEe
Confidence 3468888775 456999999999999999999999 789999999999765321 1 2466
Q ss_pred CCCC-ccccchHhhHhhhhccccCCCC----------CC------CCCceeEecC------------CCCCchhHHHHHH
Q 017295 82 PKSA-VPAFLEIHDIAGLVRGAHEGQG----------AF------EDPDIIHVDD------------SVDPVRDLEVISA 132 (374)
Q Consensus 82 ~~~~-~~~~~~v~D~~gl~~~~~~~~~----------~~------~~~~il~l~~------------~~dP~~~l~ilde 132 (374)
+|.. ++..+++.++..+......... .+ .+..+..+++ +.+| +++++||
T Consensus 81 ~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p--~llllDE 158 (222)
T cd03224 81 PEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRP--KLLLLDE 158 (222)
T ss_pred ccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCC--CEEEECC
Confidence 7765 5556778777765422111000 01 0111112222 5688 9999999
Q ss_pred HHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 133 ELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 133 ~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
|++++|.......++.+.+..+++.+ |++..+..+||++ .+|++|+++..++
T Consensus 159 Pt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i-~~l~~G~i~~~~~ 215 (222)
T cd03224 159 PSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRA-YVLERGRVVLEGT 215 (222)
T ss_pred CcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEE-EEeeCCeEEEeCC
Confidence 99999999999999999887655544 9999999999999 8999999876543
No 78
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.69 E-value=4.6e-18 Score=154.55 Aligned_cols=155 Identities=14% Similarity=0.159 Sum_probs=112.5
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-----hhccCCCC
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKSA 85 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-----~~~~~~~~ 85 (374)
+.+|+++++ |..++|+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.+|..
T Consensus 13 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-----------~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~ 81 (213)
T cd03301 13 VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGL-----------EEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNY 81 (213)
T ss_pred eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEECCcCCcccceEEEEecCh
Confidence 468888775 556999999999999999999999 7899999999997754321 24666664
Q ss_pred -ccccchHhhHhhhhccccCCC-C-------------CC---CCCceeEecC------------CCCCchhHHHHHHHHH
Q 017295 86 -VPAFLEIHDIAGLVRGAHEGQ-G-------------AF---EDPDIIHVDD------------SVDPVRDLEVISAELR 135 (374)
Q Consensus 86 -~~~~~~v~D~~gl~~~~~~~~-~-------------~~---~~~~il~l~~------------~~dP~~~l~ilde~l~ 135 (374)
++...++.|++.+........ . .+ .+..+..+++ +.+| +++++|||+.
T Consensus 82 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p--~llllDEPt~ 159 (213)
T cd03301 82 ALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREP--KVFLMDEPLS 159 (213)
T ss_pred hhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCC--CEEEEcCCcc
Confidence 445567777765532111000 0 01 1111222222 5688 9999999999
Q ss_pred hhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceec
Q 017295 136 LKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRL 183 (374)
Q Consensus 136 ~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~ 183 (374)
++|+......++.+.+..++ +.+ |+...+..+||++ .+|++|+++..
T Consensus 160 ~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i-~~l~~g~~~~~ 212 (213)
T cd03301 160 NLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRI-AVMNDGQIQQI 212 (213)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeE-EEEECCEEEec
Confidence 99999999999999887754 444 9999999999999 88888887643
No 79
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=3.9e-18 Score=167.69 Aligned_cols=158 Identities=15% Similarity=0.203 Sum_probs=120.4
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-----hhccCCC
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS 84 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-----~~~~~~~ 84 (374)
++.+|+++++. ..++|+|+||||||||+++|+|+ ..|+.|.|.++|..+.... ..|.+|.
T Consensus 31 ~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl-----------~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~ 99 (377)
T PRK11607 31 GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGF-----------EQPTAGQIMLDGVDLSHVPPYQRPINMMFQS 99 (377)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCceEEEECCEECCCCCHHHCCEEEEeCC
Confidence 34678888764 45999999999999999999999 7899999999998764322 2577777
Q ss_pred C-ccccchHhhHhhhhccccCCCC-----------------CCCCCceeEecC------------CCCCchhHHHHHHHH
Q 017295 85 A-VPAFLEIHDIAGLVRGAHEGQG-----------------AFEDPDIIHVDD------------SVDPVRDLEVISAEL 134 (374)
Q Consensus 85 ~-~~~~~~v~D~~gl~~~~~~~~~-----------------~~~~~~il~l~~------------~~dP~~~l~ilde~l 134 (374)
. +++++++.|++.+......... .+.+.....+++ +.+| +++++|||+
T Consensus 100 ~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P--~lLLLDEP~ 177 (377)
T PRK11607 100 YALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRP--KLLLLDEPM 177 (377)
T ss_pred CccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCC--CEEEEeCCc
Confidence 6 7788999999877532111000 111222223333 5789 999999999
Q ss_pred HhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 135 RLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 135 ~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+++|....+..+..+.++.++ +.+ |+..++..++|++ .+|++|+++..++
T Consensus 178 s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri-~vl~~G~i~~~g~ 233 (377)
T PRK11607 178 GALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRI-AIMNRGKFVQIGE 233 (377)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEE-EEEeCCEEEEEcC
Confidence 999999999988888777654 443 9999999999999 9999999987665
No 80
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=1.1e-17 Score=154.89 Aligned_cols=157 Identities=18% Similarity=0.141 Sum_probs=116.2
Q ss_pred ccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh----------hhc
Q 017295 15 RPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC----------QLF 80 (374)
Q Consensus 15 ~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~----------~~~ 80 (374)
+.+|+++++. ..+||+|+||||||||+++|+|. ++|++|.|.++|.++.... ..|
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~ 82 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGL-----------VEPTSGSVLIDGTDINKLKGKALRQLRRQIGM 82 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------cCCCCceEEECCEeccccCHhHHHHHHhccEE
Confidence 5688888764 56999999999999999999999 7899999999997764321 246
Q ss_pred cCCCC-ccccchHhhHhhhhccc--------cCCC--C---------------CCCCCceeEecC------------CCC
Q 017295 81 KPKSA-VPAFLEIHDIAGLVRGA--------HEGQ--G---------------AFEDPDIIHVDD------------SVD 122 (374)
Q Consensus 81 ~~~~~-~~~~~~v~D~~gl~~~~--------~~~~--~---------------~~~~~~il~l~~------------~~d 122 (374)
.+|.. +++.+++.|++.+.... .... . ...+..+..+++ +.+
T Consensus 83 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 162 (241)
T cd03256 83 IFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQ 162 (241)
T ss_pred EcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcC
Confidence 77765 55567888877543110 0000 0 011122223333 568
Q ss_pred CchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 123 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 123 P~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
| +++++|||++++|+.....+++.+.++.++ +.+ |++..+..+||++ .+|++|+++..++
T Consensus 163 p--~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v-~~l~~G~i~~~~~ 228 (241)
T cd03256 163 P--KLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRI-VGLKDGRIVFDGP 228 (241)
T ss_pred C--CEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEeecC
Confidence 9 999999999999999999999999887654 444 9999999999999 8999999886654
No 81
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=5.2e-18 Score=156.40 Aligned_cols=156 Identities=17% Similarity=0.187 Sum_probs=115.4
Q ss_pred cccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh--------h--hhcc
Q 017295 16 PILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------C--QLFK 81 (374)
Q Consensus 16 ~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l--------~--~~~~ 81 (374)
.+|+++++. ..++|+|+||||||||+++|+|. .+|+.|.|.++|.++... . ..|.
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~ 87 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGL-----------ERPTSGSVLVDGTDLTLLSGKELRKARRRIGMI 87 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEEcccCCHHHHHHHHhheEEE
Confidence 689888764 55999999999999999999999 789999999999875321 1 1466
Q ss_pred CCCC-ccccchHhhHhhhhccccCCCC-----------------CCCCCceeEecC------------CCCCchhHHHHH
Q 017295 82 PKSA-VPAFLEIHDIAGLVRGAHEGQG-----------------AFEDPDIIHVDD------------SVDPVRDLEVIS 131 (374)
Q Consensus 82 ~~~~-~~~~~~v~D~~gl~~~~~~~~~-----------------~~~~~~il~l~~------------~~dP~~~l~ild 131 (374)
+|.. +++.+++.|+..+......... ...+..+..+++ +.+| +++++|
T Consensus 88 ~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p--~lllLD 165 (233)
T cd03258 88 FQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNP--KVLLCD 165 (233)
T ss_pred ccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCC--CEEEec
Confidence 7765 5556788887765321110000 011112222332 5688 999999
Q ss_pred HHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 132 AELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 132 e~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
||++++|+.....+++.+.+..++ +.+ |+...+..+||++ .+|++|+++..++
T Consensus 166 EP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i-~~l~~G~i~~~~~ 224 (233)
T cd03258 166 EATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRV-AVMEKGEVVEEGT 224 (233)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEecC
Confidence 999999999999999999887654 444 9999999999999 8899999986653
No 82
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.69 E-value=1.6e-17 Score=154.30 Aligned_cols=151 Identities=18% Similarity=0.228 Sum_probs=118.8
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhh-----------hccCCCC-cccc
Q 017295 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-----------LFKPKSA-VPAF 89 (374)
Q Consensus 22 ~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~-----------~~~~~~~-~~~~ 89 (374)
..|+...|.|.+|||||||+++|.++ ++|+.|+|.++|.++..+.. .++.|+. +.++
T Consensus 52 ~~GeIfViMGLSGSGKSTLvR~~NrL-----------iept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPh 120 (386)
T COG4175 52 EEGEIFVIMGLSGSGKSTLVRLLNRL-----------IEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPH 120 (386)
T ss_pred cCCeEEEEEecCCCCHHHHHHHHhcc-----------CCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccc
Confidence 34566999999999999999999999 99999999999998754332 4667776 7788
Q ss_pred chHhhHhhhhccccCCCC-----------------CCCCCceeEecC------------CCCCchhHHHHHHHHHhhcHH
Q 017295 90 LEIHDIAGLVRGAHEGQG-----------------AFEDPDIIHVDD------------SVDPVRDLEVISAELRLKDIE 140 (374)
Q Consensus 90 ~~v~D~~gl~~~~~~~~~-----------------~~~~~~il~l~~------------~~dP~~~l~ilde~l~~~D~~ 140 (374)
.+|.|+.+++....+-.. .+.+...-.+++ +.|| +++++|||++.+|+-
T Consensus 121 rtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~--~IlLMDEaFSALDPL 198 (386)
T COG4175 121 RTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDP--DILLMDEAFSALDPL 198 (386)
T ss_pred hhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCC--CEEEecCchhhcChH
Confidence 999999988643322111 333333444444 6789 999999999999999
Q ss_pred HHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 141 FMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 141 ~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
......+.+.++.++ .+| ||++++.++.+|| .+|++|+++..|.+
T Consensus 199 IR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rI-aimkdG~ivQ~Gtp 249 (386)
T COG4175 199 IRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRI-AIMKDGEIVQVGTP 249 (386)
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceE-EEecCCeEEEeCCH
Confidence 888888877766644 344 9999999999999 99999999988754
No 83
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.69 E-value=6.3e-18 Score=155.54 Aligned_cols=159 Identities=16% Similarity=0.140 Sum_probs=116.4
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh--------hhhcc
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------CQLFK 81 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l--------~~~~~ 81 (374)
++.+|+++++ |..+||+|+||||||||+++|+|. ++|++|+|.++|.++... ...|.
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (230)
T TIGR03410 12 QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGL-----------LPVKSGSIRLDGEDITKLPPHERARAGIAYV 80 (230)
T ss_pred CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCEEEECCEECCCCCHHHHHHhCeEEe
Confidence 3468888876 456999999999999999999999 889999999998765321 12466
Q ss_pred CCCC-ccccchHhhHhhhhccccC-CCC--------C------CCCCceeEecC------------CCCCchhHHHHHHH
Q 017295 82 PKSA-VPAFLEIHDIAGLVRGAHE-GQG--------A------FEDPDIIHVDD------------SVDPVRDLEVISAE 133 (374)
Q Consensus 82 ~~~~-~~~~~~v~D~~gl~~~~~~-~~~--------~------~~~~~il~l~~------------~~dP~~~l~ilde~ 133 (374)
+|.. ++..+++.++..+...... ... . ..+..+..+++ +.+| +++++|||
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p--~illlDEP 158 (230)
T TIGR03410 81 PQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRP--KLLLLDEP 158 (230)
T ss_pred ccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCC--CEEEecCC
Confidence 7765 5556688777765322111 000 0 01111222222 5688 99999999
Q ss_pred HHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 134 LRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 134 l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
+.++|+......++.+.+..++ +.+ |++..+..+||++ .+|++|+++..++.
T Consensus 159 t~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v-~~l~~g~i~~~~~~ 216 (230)
T TIGR03410 159 TEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRY-YVMERGRVVASGAG 216 (230)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEE-EEEECCEEEEECCH
Confidence 9999999999999999887654 444 9999999999999 89999998876543
No 84
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.69 E-value=6.9e-18 Score=153.51 Aligned_cols=152 Identities=19% Similarity=0.198 Sum_probs=109.5
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh--------h--hh
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------C--QL 79 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l--------~--~~ 79 (374)
++.+|+++++. ..+||+|+||||||||+++|+|. .+|++|.|.++|.++... . ..
T Consensus 14 ~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~ 82 (214)
T TIGR02673 14 GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGA-----------LTPSRGQVRIAGEDVNRLRGRQLPLLRRRIG 82 (214)
T ss_pred CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEEcccCCHHHHHHHHhheE
Confidence 35689888764 45999999999999999999999 789999999999765321 1 14
Q ss_pred ccCCCC-ccccchHhhHhhhhccccCCC------C--------CC---CCCceeEecC------------CCCCchhHHH
Q 017295 80 FKPKSA-VPAFLEIHDIAGLVRGAHEGQ------G--------AF---EDPDIIHVDD------------SVDPVRDLEV 129 (374)
Q Consensus 80 ~~~~~~-~~~~~~v~D~~gl~~~~~~~~------~--------~~---~~~~il~l~~------------~~dP~~~l~i 129 (374)
|.+|.. ++...++.|+..+........ . .+ .+..+..+++ +.+| ++++
T Consensus 83 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p--~lll 160 (214)
T TIGR02673 83 VVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSP--PLLL 160 (214)
T ss_pred EEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCC--CEEE
Confidence 667665 455577877766532111000 0 11 1111222322 5689 9999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCC
Q 017295 130 ISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGK 179 (374)
Q Consensus 130 lde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~ 179 (374)
+|||++++|......+.+.+.+..+++.+ |+..++..+||++ .+|++|+
T Consensus 161 LDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i-~~l~~G~ 214 (214)
T TIGR02673 161 ADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRV-IILDDGR 214 (214)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEE-EEecCCC
Confidence 99999999999999999999887655544 9999999999998 7777663
No 85
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.68 E-value=5.4e-18 Score=157.01 Aligned_cols=158 Identities=14% Similarity=0.156 Sum_probs=115.8
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh-------h--hhc
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-------C--QLF 80 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l-------~--~~~ 80 (374)
++.+|+++++. ..+||+|+||||||||+++|+|. ..|++|.|.++|.++... . ..|
T Consensus 13 ~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 81 (240)
T PRK09493 13 PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKL-----------EEITSGDLIVDGLKVNDPKVDERLIRQEAGM 81 (240)
T ss_pred CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEECCcCChhHHHHhhceEE
Confidence 35688888764 56999999999999999999999 789999999999775421 1 146
Q ss_pred cCCCC-ccccchHhhHhhhhccccCCCC---------------CC---CCCceeEecC------------CCCCchhHHH
Q 017295 81 KPKSA-VPAFLEIHDIAGLVRGAHEGQG---------------AF---EDPDIIHVDD------------SVDPVRDLEV 129 (374)
Q Consensus 81 ~~~~~-~~~~~~v~D~~gl~~~~~~~~~---------------~~---~~~~il~l~~------------~~dP~~~l~i 129 (374)
.+|.. +++.+++.++..+......+.. .+ .+..+..+++ +.+| ++++
T Consensus 82 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p--~lll 159 (240)
T PRK09493 82 VFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKP--KLML 159 (240)
T ss_pred EecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCC--CEEE
Confidence 67665 5556788777765321000000 01 1111122222 5689 9999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 130 ISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 130 lde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+|||+.++|+......++.+.+..+++.+ |++..+..+||++ .+|++|+++..++
T Consensus 160 lDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i-~~l~~G~i~~~g~ 219 (240)
T PRK09493 160 FDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRL-IFIDKGRIAEDGD 219 (240)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEeeCC
Confidence 99999999999999999999887655554 9999999999999 8899999886654
No 86
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.68 E-value=9.4e-18 Score=166.98 Aligned_cols=159 Identities=16% Similarity=0.174 Sum_probs=124.2
Q ss_pred ccccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhh--------hc
Q 017295 13 AERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ--------LF 80 (374)
Q Consensus 13 ~~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~--------~~ 80 (374)
+..++|+++++. ..+||+|.||||||||+|+|+|. +.|++|+|.++|+.+..... ..
T Consensus 19 ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv-----------~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~ 87 (500)
T COG1129 19 GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGV-----------YPPDSGEILIDGKPVAFSSPRDALAAGIAT 87 (500)
T ss_pred CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCc-----------ccCCCceEEECCEEccCCCHHHHHhCCcEE
Confidence 356889999875 45999999999999999999999 88999999999987653221 24
Q ss_pred cCCCC-ccccchHhhHhhhhccccCCCC------------------CCCCC---ceeEecC------------CCCCchh
Q 017295 81 KPKSA-VPAFLEIHDIAGLVRGAHEGQG------------------AFEDP---DIIHVDD------------SVDPVRD 126 (374)
Q Consensus 81 ~~~~~-~~~~~~v~D~~gl~~~~~~~~~------------------~~~~~---~il~l~~------------~~dP~~~ 126 (374)
..|+. +.+++++.++..+++....+.+ .+..+ .+-.++. +.++ .
T Consensus 88 V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~a--r 165 (500)
T COG1129 88 VHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDA--R 165 (500)
T ss_pred EeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCC--C
Confidence 55665 6778999999998876554322 11111 1111111 3466 8
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 127 LEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 127 l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
++++|||++.++....+...+.++++.++|.+ |.++++.++||++ .+|++|+.+...+
T Consensus 166 llIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~Dri-tVlRDG~~v~~~~ 228 (500)
T COG1129 166 VLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRI-TVLRDGRVVGTRP 228 (500)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEE-EEEeCCEEeeecc
Confidence 99999999999999999999999999877765 9999999999999 9999999886554
No 87
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.68 E-value=7.2e-18 Score=154.91 Aligned_cols=158 Identities=19% Similarity=0.161 Sum_probs=117.9
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhh------hhh--hccC
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW------LCQ--LFKP 82 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~------l~~--~~~~ 82 (374)
..+|+++++ +..++|+|+||||||||+++|+|+ +.|++|.|.++|.++.. +.+ .+..
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GL-----------l~p~~G~v~~~g~~~~~~~~~~~~~~~vG~Vf 85 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGL-----------LKPTSGEVLVDGLDTSSEKSLLELRQKVGLVF 85 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCc-----------CcCCCCEEEECCeeccchhhHHHhhcceEEEE
Confidence 578888876 456999999999999999999999 89999999999977542 222 2333
Q ss_pred CCC--ccccchHhhHhhhhccccCC-----------------CCCCCCCceeEecC------------CCCCchhHHHHH
Q 017295 83 KSA--VPAFLEIHDIAGLVRGAHEG-----------------QGAFEDPDIIHVDD------------SVDPVRDLEVIS 131 (374)
Q Consensus 83 ~~~--~~~~~~v~D~~gl~~~~~~~-----------------~~~~~~~~il~l~~------------~~dP~~~l~ild 131 (374)
|.. ....-+|.|-+.++.....- ...+.+....++++ +.+| +++++|
T Consensus 86 Qnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P--~iliLD 163 (235)
T COG1122 86 QNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGP--EILLLD 163 (235)
T ss_pred ECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCC--CEEEEc
Confidence 332 22223555555554221110 00334455556665 6789 999999
Q ss_pred HHHHhhcHHHHHHHHHHHHHHHHcc-Cc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 132 AELRLKDIEFMERRIEDVEKSMKRS-ND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 132 e~l~~~D~~~~~~~~~~i~~~~~~~-~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
||++++|+......++.+.++...+ .+ |+++.+..++|++ .+|++|+++.++++
T Consensus 164 EPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v-~vl~~G~i~~~g~p 223 (235)
T COG1122 164 EPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRV-VVLDDGKILADGDP 223 (235)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEE-EEEECCEEeecCCH
Confidence 9999999999999999999988764 33 9999999999999 99999999888764
No 88
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.68 E-value=7.3e-18 Score=153.81 Aligned_cols=150 Identities=21% Similarity=0.144 Sum_probs=108.9
Q ss_pred ccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh---------h--hh
Q 017295 15 RPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL---------C--QL 79 (374)
Q Consensus 15 ~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l---------~--~~ 79 (374)
+.+|+++++. ..+||+|+||||||||+++|+|. ++|++|.|.++|.++... . ..
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 85 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGL-----------DRPTSGEVRVDGTDISKLSEKELAAFRRRHIG 85 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCC-----------cCCCceeEEECCEehhhcchhHHHHHHhhcEE
Confidence 5689988764 56999999999999999999999 889999999999876421 1 24
Q ss_pred ccCCCC-ccccchHhhHhhhhccccCCC------C--------CC---CCCceeEecC------------CCCCchhHHH
Q 017295 80 FKPKSA-VPAFLEIHDIAGLVRGAHEGQ------G--------AF---EDPDIIHVDD------------SVDPVRDLEV 129 (374)
Q Consensus 80 ~~~~~~-~~~~~~v~D~~gl~~~~~~~~------~--------~~---~~~~il~l~~------------~~dP~~~l~i 129 (374)
|.+|.. ++..+++.|++.+........ . .+ .+..+..+++ +.+| ++++
T Consensus 86 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p--~lll 163 (218)
T cd03255 86 FVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDP--KIIL 163 (218)
T ss_pred EEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCC--CEEE
Confidence 666664 555667887776532211000 0 00 1111222332 5689 9999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHH-ccCc-----cchHHHHHHHHHHHHHHhCCC
Q 017295 130 ISAELRLKDIEFMERRIEDVEKSMK-RSND-----KQLKIEHELCQRVKAWLQDGK 179 (374)
Q Consensus 130 lde~l~~~D~~~~~~~~~~i~~~~~-~~~~-----H~~~~~~~~~d~v~~~L~~G~ 179 (374)
+|||++++|+.....+.+.+.+..+ .+.+ |+...+. +||++ .+|++|+
T Consensus 164 LDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v-~~l~~G~ 217 (218)
T cd03255 164 ADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRI-IELRDGK 217 (218)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEE-EEeeCCc
Confidence 9999999999999999999988765 3444 9998876 89998 7787775
No 89
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.68 E-value=5.2e-18 Score=154.98 Aligned_cols=156 Identities=15% Similarity=0.173 Sum_probs=113.6
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh----h--hhccCCC
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----C--QLFKPKS 84 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l----~--~~~~~~~ 84 (374)
+.+|+++++ |..++|+|+||||||||+++|+|. .+|++|.|.++|.++... . ..|.+|.
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~ 83 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGE-----------LRPTSGTAYINGYSIRTDRKAARQSLGYCPQF 83 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEecccchHHHhhhEEEecCc
Confidence 568999875 455999999999999999999999 789999999999875321 1 1466666
Q ss_pred C-ccccchHhhHhhhhccccCCC------C--------CC---CCCceeEecC------------CCCCchhHHHHHHHH
Q 017295 85 A-VPAFLEIHDIAGLVRGAHEGQ------G--------AF---EDPDIIHVDD------------SVDPVRDLEVISAEL 134 (374)
Q Consensus 85 ~-~~~~~~v~D~~gl~~~~~~~~------~--------~~---~~~~il~l~~------------~~dP~~~l~ilde~l 134 (374)
. ++...++.+++.+........ . .+ .+..+..+++ +.+| +++++|||+
T Consensus 84 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p--~llllDEP~ 161 (220)
T cd03263 84 DALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGP--SVLLLDEPT 161 (220)
T ss_pred CCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCC--CEEEECCCC
Confidence 5 455677777765532111000 0 00 0111112222 5689 999999999
Q ss_pred HhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 135 RLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 135 ~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+++|+...+...+.+.+..+ +.+ |++..+..+||++ .+|++|+++..++
T Consensus 162 ~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i-~~l~~g~i~~~~~ 215 (220)
T cd03263 162 SGLDPASRRAIWDLILEVRK-GRSIILTTHSMDEAEALCDRI-AIMSDGKLRCIGS 215 (220)
T ss_pred CCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhcCEE-EEEECCEEEecCC
Confidence 99999999999999988764 343 9999999999999 8899999876553
No 90
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.68 E-value=5.1e-18 Score=154.80 Aligned_cols=153 Identities=18% Similarity=0.152 Sum_probs=112.3
Q ss_pred cccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh------hhccCCCC
Q 017295 16 PILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC------QLFKPKSA 85 (374)
Q Consensus 16 ~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~------~~~~~~~~ 85 (374)
.+|+++++ |..++|+|+||||||||+++|+|. .+|++|.|.++|.++.... ..|.+|..
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~ 87 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGL-----------LEPDAGFATVDGFDVVKEPAEARRRLGFVSDST 87 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------cCCCCceEEECCEEcccCHHHHHhhEEEecCCc
Confidence 68988876 456999999999999999999999 7899999999998764211 14667765
Q ss_pred -ccccchHhhHhhhhccccCCCC--------------CC---CCCceeEecC------------CCCCchhHHHHHHHHH
Q 017295 86 -VPAFLEIHDIAGLVRGAHEGQG--------------AF---EDPDIIHVDD------------SVDPVRDLEVISAELR 135 (374)
Q Consensus 86 -~~~~~~v~D~~gl~~~~~~~~~--------------~~---~~~~il~l~~------------~~dP~~~l~ilde~l~ 135 (374)
+++.+++.|++.+......... .+ .+..+-.+++ +.+| +++++|||+.
T Consensus 88 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p--~illlDEPt~ 165 (218)
T cd03266 88 GLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDP--PVLLLDEPTT 165 (218)
T ss_pred ccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCC--CEEEEcCCCc
Confidence 5556788887765322111000 00 0111112222 5689 9999999999
Q ss_pred hhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCcee
Q 017295 136 LKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVR 182 (374)
Q Consensus 136 ~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~ 182 (374)
++|........+.+.+..+++.+ |+...+..++|++ .+|++|+++.
T Consensus 166 ~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i-~~l~~G~i~~ 216 (218)
T cd03266 166 GLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRV-VVLHRGRVVY 216 (218)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEE-EEEECCEEee
Confidence 99999999999999887655544 9999999999999 8888888753
No 91
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.68 E-value=1.2e-17 Score=154.90 Aligned_cols=159 Identities=16% Similarity=0.159 Sum_probs=117.0
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh--------h--hh
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------C--QL 79 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l--------~--~~ 79 (374)
++.+|+++++. ..++|+|+||||||||+++|+|. .+|++|.|.++|.++... . ..
T Consensus 14 ~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~ 82 (243)
T TIGR02315 14 GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRL-----------VEPSSGSILLEGTDITKLRGKKLRKLRRRIG 82 (243)
T ss_pred CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------cCCCccEEEECCEEhhhCCHHHHHHHHhheE
Confidence 35689988864 45999999999999999999999 789999999999775421 1 24
Q ss_pred ccCCCC-ccccchHhhHhhhhcccc-----------CCCC--------------CCCCCceeEecC------------CC
Q 017295 80 FKPKSA-VPAFLEIHDIAGLVRGAH-----------EGQG--------------AFEDPDIIHVDD------------SV 121 (374)
Q Consensus 80 ~~~~~~-~~~~~~v~D~~gl~~~~~-----------~~~~--------------~~~~~~il~l~~------------~~ 121 (374)
|.+|.. ++..+++.|++.+..... .... .+.+..+..+++ +.
T Consensus 83 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~ 162 (243)
T TIGR02315 83 MIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQ 162 (243)
T ss_pred EEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 677765 555678888775432100 0000 111222233333 57
Q ss_pred CCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 122 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 122 dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
+| +++++|||++++|........+.+.++.++ +.+ |+...+..+||++ .+|++|+++..++.
T Consensus 163 ~p--~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v-~~l~~G~i~~~~~~ 230 (243)
T TIGR02315 163 QP--DLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRI-VGLKAGEIVFDGAP 230 (243)
T ss_pred CC--CEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeE-EEEECCEEEecCCH
Confidence 89 999999999999999999999999887654 443 9999999999999 89999998866543
No 92
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=6.8e-18 Score=159.11 Aligned_cols=159 Identities=19% Similarity=0.234 Sum_probs=116.5
Q ss_pred ccccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh-----------h
Q 017295 13 AERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----------C 77 (374)
Q Consensus 13 ~~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l-----------~ 77 (374)
+.+.+|+++++. ..++|+|+||||||||+++|+|. +.|++|.|.++|.++... .
T Consensus 35 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl-----------~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRL-----------IEPTSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence 345688888764 56999999999999999999999 789999999999765321 1
Q ss_pred hhccCCCC-ccccchHhhHhhhhccccCCC------C-----------CCCCCceeEecC------------CCCCchhH
Q 017295 78 QLFKPKSA-VPAFLEIHDIAGLVRGAHEGQ------G-----------AFEDPDIIHVDD------------SVDPVRDL 127 (374)
Q Consensus 78 ~~~~~~~~-~~~~~~v~D~~gl~~~~~~~~------~-----------~~~~~~il~l~~------------~~dP~~~l 127 (374)
..|.+|.. ++..+++.|++.+........ . .+.+..+-.+++ +.+| ++
T Consensus 104 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p--~i 181 (269)
T cd03294 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDP--DI 181 (269)
T ss_pred EEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCC--CE
Confidence 24667765 555678888776532111000 0 011122223333 5789 99
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 128 EVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 128 ~ilde~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+++|||+.++|......+.+.+.++.++ +.+ |++..+..+||++ .+|++|+++..++
T Consensus 182 llLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v-~~l~~G~i~~~g~ 244 (269)
T cd03294 182 LLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRI-AIMKDGRLVQVGT 244 (269)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEE-EEEECCEEEEeCC
Confidence 9999999999999999999999887644 444 9999999999999 8899999876553
No 93
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.68 E-value=7.8e-18 Score=149.54 Aligned_cols=147 Identities=16% Similarity=0.193 Sum_probs=108.4
Q ss_pred ccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh--------hhccCCC
Q 017295 17 ILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC--------QLFKPKS 84 (374)
Q Consensus 17 vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~--------~~~~~~~ 84 (374)
+|+++++ |..++|+|+||||||||+++|+|. .+|++|+|.++|.++.... ..|.+|+
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~ 83 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGL-----------RPPASGEITLDGKPVTRRSPRDAIRAGIAYVPED 83 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEECCccCHHHHHhCCeEEecCC
Confidence 6777765 456999999999999999999999 7899999999997764321 2466665
Q ss_pred ----CccccchHhhHhhhhccccCCCCCCCCCceeEecCCCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc--
Q 017295 85 ----AVPAFLEIHDIAGLVRGAHEGQGAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-- 158 (374)
Q Consensus 85 ----~~~~~~~v~D~~gl~~~~~~~~~~~~~~~il~l~~~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-- 158 (374)
.++...++.|+..+....|.|+. ....+...-+.+| +++++|||++++|+.......+.+.+..+++.+
T Consensus 84 ~~~~~~~~~~t~~e~l~~~~~LS~G~~---qrl~la~al~~~p--~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tii 158 (182)
T cd03215 84 RKREGLVLDLSVAENIALSSLLSGGNQ---QKVVLARWLARDP--RVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVL 158 (182)
T ss_pred cccCcccCCCcHHHHHHHHhhcCHHHH---HHHHHHHHHccCC--CEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 24556788888766433444432 0000000113468 899999999999999999999999887655544
Q ss_pred ---cchHHHHHHHHHHHHHHhCCCc
Q 017295 159 ---KQLKIEHELCQRVKAWLQDGKD 180 (374)
Q Consensus 159 ---H~~~~~~~~~d~v~~~L~~G~i 180 (374)
|+...+..+||++ .+|++|++
T Consensus 159 i~sh~~~~~~~~~d~v-~~l~~G~i 182 (182)
T cd03215 159 LISSELDELLGLCDRI-LVMYEGRI 182 (182)
T ss_pred EEeCCHHHHHHhCCEE-EEecCCcC
Confidence 9999999999999 78887753
No 94
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=8.9e-18 Score=155.68 Aligned_cols=158 Identities=16% Similarity=0.198 Sum_probs=115.8
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh--------hhhcc
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------CQLFK 81 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l--------~~~~~ 81 (374)
++.+|+++++. ..+||+|+||||||||+++|+|. ..|++|.|.++|.++... ...|.
T Consensus 15 ~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 83 (241)
T PRK10895 15 GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGI-----------VPRDAGNIIIDDEDISLLPLHARARRGIGYL 83 (241)
T ss_pred CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEECCCCCHHHHHHhCeEEe
Confidence 35689888764 56999999999999999999999 789999999999765321 12466
Q ss_pred CCCC-ccccchHhhHhhhhccccCCC---C------------CC---CCCceeEecC------------CCCCchhHHHH
Q 017295 82 PKSA-VPAFLEIHDIAGLVRGAHEGQ---G------------AF---EDPDIIHVDD------------SVDPVRDLEVI 130 (374)
Q Consensus 82 ~~~~-~~~~~~v~D~~gl~~~~~~~~---~------------~~---~~~~il~l~~------------~~dP~~~l~il 130 (374)
+|.. ++..+++.|++.+........ . .+ .+..+-.+++ ..+| +++++
T Consensus 84 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p--~llll 161 (241)
T PRK10895 84 PQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANP--KFILL 161 (241)
T ss_pred ccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCC--CEEEE
Confidence 7765 555678888776532111100 0 01 0111222222 5688 99999
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 131 SAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 131 de~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
|||+.++|+......++.+....+.+.+ |+...+..+||++ .+|++|+++..++
T Consensus 162 DEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v-~~l~~G~i~~~~~ 220 (241)
T PRK10895 162 DEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERA-YIVSQGHLIAHGT 220 (241)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEE-EEEeCCeEEeeCC
Confidence 9999999999999988888877655554 9999999999999 8899999886554
No 95
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.68 E-value=9.3e-18 Score=156.33 Aligned_cols=158 Identities=13% Similarity=0.211 Sum_probs=115.0
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh-------------
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------------- 76 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l------------- 76 (374)
++.+|+++++. ..+||+|+||||||||+++|+|. ..|+.|.|.++|.++...
T Consensus 15 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 83 (250)
T PRK11264 15 GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLL-----------EQPEAGTIRVGDITIDTARSLSQQKGLIRQL 83 (250)
T ss_pred CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCeEEEECCEEccccccccchhhHHHHh
Confidence 34688988765 45999999999999999999999 789999999998765311
Q ss_pred h--hhccCCCC-ccccchHhhHhhhhccccCCCC---------------CC---CCCceeEecC------------CCCC
Q 017295 77 C--QLFKPKSA-VPAFLEIHDIAGLVRGAHEGQG---------------AF---EDPDIIHVDD------------SVDP 123 (374)
Q Consensus 77 ~--~~~~~~~~-~~~~~~v~D~~gl~~~~~~~~~---------------~~---~~~~il~l~~------------~~dP 123 (374)
. ..|.+|.. +++..++.|++.+......+.. .+ .+...-.+++ +.+|
T Consensus 84 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p 163 (250)
T PRK11264 84 RQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRP 163 (250)
T ss_pred hhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCC
Confidence 1 14667765 4555677777654211000000 11 1112222332 5689
Q ss_pred chhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 124 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 124 ~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+++++|||++++|.......++.+.++.+++.+ |+...+..+||++ .+|++|+++..++
T Consensus 164 --~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i-~~l~~G~i~~~~~ 227 (250)
T PRK11264 164 --EVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRA-IFMDQGRIVEQGP 227 (250)
T ss_pred --CEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEE-EEEECCEEEEeCC
Confidence 999999999999999999999999887755544 9999999999999 8999999876543
No 96
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.68 E-value=8.5e-18 Score=158.46 Aligned_cols=158 Identities=15% Similarity=0.151 Sum_probs=115.6
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh--------h--hh
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------C--QL 79 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l--------~--~~ 79 (374)
++.+|+++++. ..++|+|+||||||||+++|+|. .+|++|.|.++|.++... . ..
T Consensus 19 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~ 87 (269)
T PRK11831 19 NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQ-----------IAPDHGEILFDGENIPAMSRSRLYTVRKRMS 87 (269)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEEccccChhhHHHHhhcEE
Confidence 45688888764 46999999999999999999999 789999999999765321 1 24
Q ss_pred ccCCCC-ccccchHhhHhhhhccccCCCC---------------CC---CCCceeEecC------------CCCCchhHH
Q 017295 80 FKPKSA-VPAFLEIHDIAGLVRGAHEGQG---------------AF---EDPDIIHVDD------------SVDPVRDLE 128 (374)
Q Consensus 80 ~~~~~~-~~~~~~v~D~~gl~~~~~~~~~---------------~~---~~~~il~l~~------------~~dP~~~l~ 128 (374)
|.+|.. ++..+++.|++.+......... .+ .+..+-.+++ +.+| +++
T Consensus 88 ~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p--~ll 165 (269)
T PRK11831 88 MLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEP--DLI 165 (269)
T ss_pred EEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCC--CEE
Confidence 667765 5556788887765321110000 01 1111222332 5689 999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 129 VISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 129 ilde~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
++|||+.++|......+++.+.++.++ +.+ |++..+..+||++ .+|++|+++..++
T Consensus 166 lLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v-~~l~~G~i~~~g~ 227 (269)
T PRK11831 166 MFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHA-YIVADKKIVAHGS 227 (269)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEE-EEEECCEEEEeCC
Confidence 999999999999999999999887654 444 9999999999999 8899999876654
No 97
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.67 E-value=1.6e-17 Score=150.78 Aligned_cols=148 Identities=20% Similarity=0.168 Sum_probs=108.1
Q ss_pred ccCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-----hhccCCCC-ccccchHhh
Q 017295 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKSA-VPAFLEIHD 94 (374)
Q Consensus 21 i~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-----~~~~~~~~-~~~~~~v~D 94 (374)
+..|..++|+|+||||||||+++|+|. .+|++|.|.++|.++.... ..|.+|.. +++.+++.|
T Consensus 21 i~~Ge~~~l~G~nGsGKSTLl~~l~gl-----------~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 89 (211)
T cd03298 21 FAQGEITAIVGPSGSGKSTLLNLIAGF-----------ETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQ 89 (211)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHH
Confidence 345667999999999999999999999 7899999999997653321 24666665 555678888
Q ss_pred HhhhhccccCC---C-C----------C---CCCCceeEecC------------CCCCchhHHHHHHHHHhhcHHHHHHH
Q 017295 95 IAGLVRGAHEG---Q-G----------A---FEDPDIIHVDD------------SVDPVRDLEVISAELRLKDIEFMERR 145 (374)
Q Consensus 95 ~~gl~~~~~~~---~-~----------~---~~~~~il~l~~------------~~dP~~~l~ilde~l~~~D~~~~~~~ 145 (374)
+..+....... . . . ..+..+..+++ +.+| +++++|||++++|.......
T Consensus 90 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p--~llllDEP~~~LD~~~~~~l 167 (211)
T cd03298 90 NVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDK--PVLLLDEPFAALDPALRAEM 167 (211)
T ss_pred HHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCC--CEEEEcCCcccCCHHHHHHH
Confidence 77653221100 0 0 0 01112222332 5689 99999999999999999999
Q ss_pred HHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCcee
Q 017295 146 IEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVR 182 (374)
Q Consensus 146 ~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~ 182 (374)
++.+.++.++ +.+ |++..+..+||++ .+|++|+++.
T Consensus 168 ~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i-~~l~~G~i~~ 209 (211)
T cd03298 168 LDLVLDLHAETKMTVLMVTHQPEDAKRLAQRV-VFLDNGRIAA 209 (211)
T ss_pred HHHHHHHHHhcCCEEEEEecCHHHHHhhhCEE-EEEECCEEee
Confidence 9999887643 444 9999999999999 8889888753
No 98
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.67 E-value=1.2e-17 Score=151.60 Aligned_cols=150 Identities=21% Similarity=0.207 Sum_probs=107.3
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh-----h--hhccCC
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C--QLFKPK 83 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l-----~--~~~~~~ 83 (374)
+.+|+++++ |..+||+|+||||||||+++|+|. +.|++|.|.++|.++... . ..|.+|
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q 82 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGL-----------LGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQ 82 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcC-----------CCCCCceEEECCEEcccCCHHHHHhhceEEec
Confidence 568888875 456999999999999999999999 789999999999765321 1 146666
Q ss_pred CC--ccccchHhhHhhhhccccC-C--C---C-----------CCCCCceeEecC------------CCCCchhHHHHHH
Q 017295 84 SA--VPAFLEIHDIAGLVRGAHE-G--Q---G-----------AFEDPDIIHVDD------------SVDPVRDLEVISA 132 (374)
Q Consensus 84 ~~--~~~~~~v~D~~gl~~~~~~-~--~---~-----------~~~~~~il~l~~------------~~dP~~~l~ilde 132 (374)
.. .+...++.|++.+...... . . . .+.+..+..+++ +.+| +++++||
T Consensus 83 ~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p--~llllDE 160 (211)
T cd03225 83 NPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDP--DILLLDE 160 (211)
T ss_pred ChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCC--CEEEEcC
Confidence 64 2345677777654311100 0 0 0 011122223333 5688 9999999
Q ss_pred HHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCC
Q 017295 133 ELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDG 178 (374)
Q Consensus 133 ~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G 178 (374)
|++++|+.....+++.+.+..+++.+ |+...+..+||++ .+|++|
T Consensus 161 Pt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i-~~l~~G 210 (211)
T cd03225 161 PTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRV-IVLEDG 210 (211)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEE-EEEeCC
Confidence 99999999999999999887755444 9999999999988 667665
No 99
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.67 E-value=9e-18 Score=152.47 Aligned_cols=153 Identities=19% Similarity=0.186 Sum_probs=111.3
Q ss_pred ccccccccCCc---eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh------hhccCCCC
Q 017295 15 RPILGRFSSHL---KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC------QLFKPKSA 85 (374)
Q Consensus 15 ~~vL~~i~~~~---~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~------~~~~~~~~ 85 (374)
+.+|+++++.. .++|+|+||||||||+++|+|. ++|++|.|.++|.++.... ..|.+|..
T Consensus 13 ~~~l~~vs~~i~~g~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~ 81 (211)
T cd03264 13 KRALDGVSLTLGPGMYGLLGPNGAGKTTLMRILATL-----------TPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEF 81 (211)
T ss_pred EEEEcceeEEEcCCcEEEECCCCCCHHHHHHHHhCC-----------CCCCccEEEECCCccccchHHHHhheEEecCCC
Confidence 46888877543 6999999999999999999999 8899999999997764321 14666665
Q ss_pred -ccccchHhhHhhhhccccC---CC--C---------C---CCCCceeEecC------------CCCCchhHHHHHHHHH
Q 017295 86 -VPAFLEIHDIAGLVRGAHE---GQ--G---------A---FEDPDIIHVDD------------SVDPVRDLEVISAELR 135 (374)
Q Consensus 86 -~~~~~~v~D~~gl~~~~~~---~~--~---------~---~~~~~il~l~~------------~~dP~~~l~ilde~l~ 135 (374)
++..+++.|+..+...... .. . . +.+..+..+++ +.+| +++++|||+.
T Consensus 82 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p--~llllDEPt~ 159 (211)
T cd03264 82 GVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDP--SILIVDEPTA 159 (211)
T ss_pred cccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCC--CEEEEcCCcc
Confidence 4555678777665321110 00 0 0 11112222222 5789 9999999999
Q ss_pred hhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCcee
Q 017295 136 LKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVR 182 (374)
Q Consensus 136 ~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~ 182 (374)
++|+...+...+.+.+..+ +.+ |+...+..++|++ .+|++|+++.
T Consensus 160 ~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~~d~i-~~l~~g~i~~ 209 (211)
T cd03264 160 GLDPEERIRFRNLLSELGE-DRIVILSTHIVEDVESLCNQV-AVLNKGKLVF 209 (211)
T ss_pred cCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHhCCEE-EEEECCEEEe
Confidence 9999999999999988764 344 9999998999999 8889888764
No 100
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.67 E-value=1.3e-17 Score=151.59 Aligned_cols=151 Identities=17% Similarity=0.222 Sum_probs=109.4
Q ss_pred ccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhh-------hh--hhcc
Q 017295 15 RPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFK 81 (374)
Q Consensus 15 ~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~-------l~--~~~~ 81 (374)
+.+|+++++. ..+||+|+||||||||+++|+|. .+|++|.|.++|.++.. .. ..|.
T Consensus 13 ~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~ 81 (213)
T cd03262 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLL-----------EEPDSGTIIIDGLKLTDDKKNINELRQKVGMV 81 (213)
T ss_pred eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEECCccchhHHHHHhcceEE
Confidence 4688888764 56999999999999999999999 78999999999976521 11 1466
Q ss_pred CCCC-ccccchHhhHhhhhccccCCCC------------------CCCCCceeEecC------------CCCCchhHHHH
Q 017295 82 PKSA-VPAFLEIHDIAGLVRGAHEGQG------------------AFEDPDIIHVDD------------SVDPVRDLEVI 130 (374)
Q Consensus 82 ~~~~-~~~~~~v~D~~gl~~~~~~~~~------------------~~~~~~il~l~~------------~~dP~~~l~il 130 (374)
+|.. ++..+++.|+..+......+.. ...+..+..+++ +.+| +++++
T Consensus 82 ~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p--~llll 159 (213)
T cd03262 82 FQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNP--KVMLF 159 (213)
T ss_pred ecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCC--CEEEE
Confidence 7765 4555778777755321000000 011122223333 5689 99999
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCC
Q 017295 131 SAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGK 179 (374)
Q Consensus 131 de~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~ 179 (374)
|||+.++|....+...+.+.+..+.+.+ |+...+..+||++ .+|++|+
T Consensus 160 DEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i-~~l~~g~ 212 (213)
T cd03262 160 DEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRV-IFMDDGR 212 (213)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEE-EEEeCCc
Confidence 9999999999999999999887755544 9999999999998 7777775
No 101
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=8.1e-18 Score=159.03 Aligned_cols=158 Identities=19% Similarity=0.200 Sum_probs=116.7
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-------hhccCC
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPK 83 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-------~~~~~~ 83 (374)
+.+|+++++ |..+||+|+||||||||+++|+|. .+|++|.|.++|.++.... ..|.+|
T Consensus 18 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q 86 (274)
T PRK13647 18 TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGI-----------YLPQRGRVKVMGREVNAENEKWVRSKVGLVFQ 86 (274)
T ss_pred CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-----------CCCCceEEEECCEECCCCCHHHHHhhEEEEec
Confidence 468988876 456999999999999999999999 8899999999997763211 146666
Q ss_pred CC--ccccchHhhHhhhhccccCCC-----C------------CCCCCceeEecC------------CCCCchhHHHHHH
Q 017295 84 SA--VPAFLEIHDIAGLVRGAHEGQ-----G------------AFEDPDIIHVDD------------SVDPVRDLEVISA 132 (374)
Q Consensus 84 ~~--~~~~~~v~D~~gl~~~~~~~~-----~------------~~~~~~il~l~~------------~~dP~~~l~ilde 132 (374)
.. .....++.+++.+......-. . .+.+..+..+++ +.+| +++++||
T Consensus 87 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p--~llllDE 164 (274)
T PRK13647 87 DPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDP--DVIVLDE 164 (274)
T ss_pred ChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCC--CEEEEEC
Confidence 53 233457777776532111000 0 111222223333 5789 9999999
Q ss_pred HHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 133 ELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 133 ~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
|+.++|+.....+++.+.++.+++.+ |+++.+..+||++ .+|++|+++..++.
T Consensus 165 Pt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i-~~l~~G~i~~~g~~ 222 (274)
T PRK13647 165 PMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQV-IVLKEGRVLAEGDK 222 (274)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEECCH
Confidence 99999999999999999988755554 9999999999999 99999999877653
No 102
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.67 E-value=1.1e-17 Score=153.54 Aligned_cols=157 Identities=18% Similarity=0.164 Sum_probs=115.8
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCccc-----CCceeEEEeCCcchhhhh-------
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTI-----EPNEARVNIPDERFEWLC------- 77 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~-----~p~~G~i~~~g~~~~~l~------- 77 (374)
.+.+|+++++ |..++|+|+||||||||+++|+|. . .|++|.|.++|.++....
T Consensus 12 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~-----------~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (227)
T cd03260 12 DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRL-----------NDLIPGAPDEGEVLLDGKDIYDLDVDVLELR 80 (227)
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh-----------cccccCCCCCeEEEECCEEhhhcchHHHHHH
Confidence 3468888875 456999999999999999999999 6 799999999998764321
Q ss_pred --hhccCCCC-ccccchHhhHhhhhccccC---CC----C--------CCC---CCc--eeEecC------------CCC
Q 017295 78 --QLFKPKSA-VPAFLEIHDIAGLVRGAHE---GQ----G--------AFE---DPD--IIHVDD------------SVD 122 (374)
Q Consensus 78 --~~~~~~~~-~~~~~~v~D~~gl~~~~~~---~~----~--------~~~---~~~--il~l~~------------~~d 122 (374)
..|.+|.. ++ .+++.|++.+...... .. . .+. +.. ...+++ +.+
T Consensus 81 ~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~ 159 (227)
T cd03260 81 RRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANE 159 (227)
T ss_pred hhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcC
Confidence 14667765 44 5788887765321110 00 0 111 111 233443 568
Q ss_pred CchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 123 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 123 P~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
| +++++|||++++|.......++.+.+..++ .+ |++..+..+||++ .+|++|+++..++.
T Consensus 160 p--~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i-~~l~~G~i~~~g~~ 224 (227)
T cd03260 160 P--EVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRT-AFLLNGRLVEFGPT 224 (227)
T ss_pred C--CEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHhCCEE-EEEeCCEEEEecCc
Confidence 9 999999999999999999999999887655 43 9999999999999 89999998766543
No 103
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=7.4e-18 Score=166.51 Aligned_cols=158 Identities=18% Similarity=0.200 Sum_probs=119.1
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh-----------hh
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----------CQ 78 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l-----------~~ 78 (374)
...+|+++++. ..++|+|+||||||||+++|+|+ ++|++|.|.++|.++... ..
T Consensus 40 ~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl-----------~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~i 108 (400)
T PRK10070 40 LSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRL-----------IEPTRGQVLIDGVDIAKISDAELREVRRKKI 108 (400)
T ss_pred CeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcC-----------CCCCCCEEEECCEECCcCCHHHHHHHHhCCE
Confidence 44578888764 55999999999999999999999 889999999999875321 12
Q ss_pred hccCCCC-ccccchHhhHhhhhccccCCC------C-----------CCCCCceeEecC------------CCCCchhHH
Q 017295 79 LFKPKSA-VPAFLEIHDIAGLVRGAHEGQ------G-----------AFEDPDIIHVDD------------SVDPVRDLE 128 (374)
Q Consensus 79 ~~~~~~~-~~~~~~v~D~~gl~~~~~~~~------~-----------~~~~~~il~l~~------------~~dP~~~l~ 128 (374)
.|.+|.. +++.+++.|++.+........ . .+.+..+..+++ +.+| +++
T Consensus 109 gyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P--~iL 186 (400)
T PRK10070 109 AMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINP--DIL 186 (400)
T ss_pred EEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCC--CEE
Confidence 4777775 666788888887643211000 0 111222333443 6789 999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 129 VISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 129 ilde~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
++|||++++|+.....+++.+.++.++ +.+ |++.++..+||++ .+|++|+++..++
T Consensus 187 LLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri-~vL~~G~i~~~g~ 248 (400)
T PRK10070 187 LMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRI-AIMQNGEVVQVGT 248 (400)
T ss_pred EEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEE-EEEECCEEEecCC
Confidence 999999999999999999999887643 444 9999999999999 9999999886653
No 104
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=1.7e-17 Score=155.22 Aligned_cols=158 Identities=16% Similarity=0.305 Sum_probs=115.7
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh-----h--hhccC
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C--QLFKP 82 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l-----~--~~~~~ 82 (374)
++.+|+++++ |..++|+|+||||||||+++|+|. .+|++|.|.++|.++... . ..|.+
T Consensus 14 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 82 (255)
T PRK11231 14 TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARL-----------LTPQSGTVFLGDKPISMLSSRQLARRLALLP 82 (255)
T ss_pred CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------cCCCCcEEEECCEEhHHCCHHHHhhheEEec
Confidence 4578999775 456999999999999999999999 789999999999765421 1 24666
Q ss_pred CCC-ccccchHhhHhhhhccc----cC---CCC-----------CC---CCCceeEecC------------CCCCchhHH
Q 017295 83 KSA-VPAFLEIHDIAGLVRGA----HE---GQG-----------AF---EDPDIIHVDD------------SVDPVRDLE 128 (374)
Q Consensus 83 ~~~-~~~~~~v~D~~gl~~~~----~~---~~~-----------~~---~~~~il~l~~------------~~dP~~~l~ 128 (374)
|.. ++..+++.|+..+.... .. ... .+ .+..+..+++ +.+| +++
T Consensus 83 q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p--~ll 160 (255)
T PRK11231 83 QHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDT--PVV 160 (255)
T ss_pred ccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCC--CEE
Confidence 665 45556777776553110 00 000 00 1112222332 5789 999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 129 VISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 129 ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
++|||+.++|+.......+.+.++.+++.+ |++..+.++||++ .+|++|+++..++
T Consensus 161 llDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i-~~l~~G~i~~~~~ 221 (255)
T PRK11231 161 LLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHL-VVLANGHVMAQGT 221 (255)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEE-EEEECCeEEEEcC
Confidence 999999999999999999999887655544 9999999999999 8999999876654
No 105
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.67 E-value=1.1e-17 Score=152.15 Aligned_cols=151 Identities=13% Similarity=0.060 Sum_probs=109.5
Q ss_pred ccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh----------hhhc
Q 017295 15 RPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----------CQLF 80 (374)
Q Consensus 15 ~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l----------~~~~ 80 (374)
+.+|+++++. ..++|+|+||||||||+++|+|. .+|++|.|.++|.++... ...|
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~ 82 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKE-----------ELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGV 82 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCEEcccCCHHHHHHHHHheEE
Confidence 5689888764 45999999999999999999999 789999999999865321 1246
Q ss_pred cCCCC-ccccchHhhHhhhhccccCCCC--------------CC---CCCceeEecC------------CCCCchhHHHH
Q 017295 81 KPKSA-VPAFLEIHDIAGLVRGAHEGQG--------------AF---EDPDIIHVDD------------SVDPVRDLEVI 130 (374)
Q Consensus 81 ~~~~~-~~~~~~v~D~~gl~~~~~~~~~--------------~~---~~~~il~l~~------------~~dP~~~l~il 130 (374)
.+|.. +++.+++.|+..+......... .+ .+..+..+++ +.+| +++++
T Consensus 83 v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p--~llll 160 (214)
T cd03292 83 VFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSP--TILIA 160 (214)
T ss_pred EecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCC--CEEEE
Confidence 67765 5556777777665321110000 00 1111222222 5689 99999
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCC
Q 017295 131 SAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGK 179 (374)
Q Consensus 131 de~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~ 179 (374)
|||++++|+.......+.+.+..+++.+ |+...+..+||++ .+|++|+
T Consensus 161 DEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i-~~l~~G~ 213 (214)
T cd03292 161 DEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRV-IALERGK 213 (214)
T ss_pred eCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEE-EEEeCCc
Confidence 9999999999999999999887655544 9999988899988 7777775
No 106
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.67 E-value=1.7e-17 Score=152.86 Aligned_cols=150 Identities=16% Similarity=0.221 Sum_probs=110.9
Q ss_pred ccCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh--hhccCCCC-ccccchHhhHhh
Q 017295 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC--QLFKPKSA-VPAFLEIHDIAG 97 (374)
Q Consensus 21 i~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~--~~~~~~~~-~~~~~~v~D~~g 97 (374)
+..|..++|+|+||||||||+++|+|. .+|++|.|.++|.++.... ..|.+|.. ++..+++.|+..
T Consensus 8 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 8 IQQGEFISLIGHSGCGKSTLLNLISGL-----------AQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHH
Confidence 456778999999999999999999999 7899999999998764321 25667765 555578888776
Q ss_pred hhccc-cCCCC---------------CC---CCCceeEecC------------CCCCchhHHHHHHHHHhhcHHHHHHHH
Q 017295 98 LVRGA-HEGQG---------------AF---EDPDIIHVDD------------SVDPVRDLEVISAELRLKDIEFMERRI 146 (374)
Q Consensus 98 l~~~~-~~~~~---------------~~---~~~~il~l~~------------~~dP~~~l~ilde~l~~~D~~~~~~~~ 146 (374)
+.... ..+.. .+ .+..+..+++ +.+| +++++|||++++|+.....++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p--~lllLDEPt~gLD~~~~~~l~ 154 (230)
T TIGR01184 77 LAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRP--KVLLLDEPFGALDALTRGNLQ 154 (230)
T ss_pred HHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCC--CEEEEcCCCcCCCHHHHHHHH
Confidence 53110 00000 01 1112222332 5689 999999999999999999999
Q ss_pred HHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceecc
Q 017295 147 EDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLG 184 (374)
Q Consensus 147 ~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~ 184 (374)
+.+.+..++ +.+ |++..+..+||++ .+|++|+++..+
T Consensus 155 ~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v-~~l~~G~i~~~~ 197 (230)
T TIGR01184 155 EELMQIWEEHRVTVLMVTHDVDEALLLSDRV-VMLTNGPAANIG 197 (230)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHHhcCEE-EEEeCCcEeccc
Confidence 999887654 444 9999999999999 899999987554
No 107
>PRK10908 cell division protein FtsE; Provisional
Probab=99.67 E-value=1.3e-17 Score=152.76 Aligned_cols=155 Identities=13% Similarity=0.058 Sum_probs=112.4
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh--------h--hh
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------C--QL 79 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l--------~--~~ 79 (374)
++.+|+++++ |..+||+|+||||||||+++|+|. .+|++|.|.++|.++..+ . ..
T Consensus 14 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~ 82 (222)
T PRK10908 14 GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGI-----------ERPSAGKIWFSGHDITRLKNREVPFLRRQIG 82 (222)
T ss_pred CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEEcccCChhHHHHHHhheE
Confidence 3568988875 456999999999999999999999 789999999999765321 1 14
Q ss_pred ccCCCC-ccccchHhhHhhhhccccC-C--C------C-----CC---CCCceeEecC------------CCCCchhHHH
Q 017295 80 FKPKSA-VPAFLEIHDIAGLVRGAHE-G--Q------G-----AF---EDPDIIHVDD------------SVDPVRDLEV 129 (374)
Q Consensus 80 ~~~~~~-~~~~~~v~D~~gl~~~~~~-~--~------~-----~~---~~~~il~l~~------------~~dP~~~l~i 129 (374)
|.+|.. ++..+++.|++.+...... . . . .+ .+..+..+++ ..+| ++++
T Consensus 83 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p--~lll 160 (222)
T PRK10908 83 MIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKP--AVLL 160 (222)
T ss_pred EEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCC--CEEE
Confidence 667765 4455677777655321110 0 0 0 01 1111222222 5689 9999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCcee
Q 017295 130 ISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVR 182 (374)
Q Consensus 130 lde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~ 182 (374)
+|||++++|+...+.+++.+.+..+++.+ |+...+..+||++ .+|++|+++.
T Consensus 161 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i-~~l~~G~i~~ 217 (222)
T PRK10908 161 ADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRM-LTLSDGHLHG 217 (222)
T ss_pred EeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEE-EEEECCEEcc
Confidence 99999999999999999999887655444 9999999999999 8889888753
No 108
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=8.6e-18 Score=155.40 Aligned_cols=159 Identities=14% Similarity=0.109 Sum_probs=115.1
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh------h--hhcc
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------C--QLFK 81 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l------~--~~~~ 81 (374)
.+.+|+++++. ..+||+|+||||||||+++|+|. .+|++|.|.++|.++... . ..|.
T Consensus 17 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 85 (237)
T PRK11614 17 KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGD-----------PRATSGRIVFDGKDITDWQTAKIMREAVAIV 85 (237)
T ss_pred CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCC-----------CCCCCceEEECCEecCCCCHHHHHHhCEEEe
Confidence 35688888764 55999999999999999999999 789999999999875321 1 1466
Q ss_pred CCCC-ccccchHhhHhhhhccccCCCC----------CC------CCCceeEecC------------CCCCchhHHHHHH
Q 017295 82 PKSA-VPAFLEIHDIAGLVRGAHEGQG----------AF------EDPDIIHVDD------------SVDPVRDLEVISA 132 (374)
Q Consensus 82 ~~~~-~~~~~~v~D~~gl~~~~~~~~~----------~~------~~~~il~l~~------------~~dP~~~l~ilde 132 (374)
+|.. +++.+++.|+..+......... .+ .+..+-.+++ +.+| +++++||
T Consensus 86 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p--~illlDE 163 (237)
T PRK11614 86 PEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQP--RLLLLDE 163 (237)
T ss_pred ccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCC--CEEEEcC
Confidence 6664 4555677777655321100000 00 0111111222 5689 9999999
Q ss_pred HHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 133 ELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 133 ~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
|+.++|+.......+.+.++.+++.+ |++.++..+||++ .+|++|+++..++.
T Consensus 164 Pt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i-~~l~~G~i~~~~~~ 221 (237)
T PRK11614 164 PSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRG-YVLENGHVVLEDTG 221 (237)
T ss_pred ccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEE-EEEeCCEEEeeCCH
Confidence 99999999999999999887655554 9999999999999 99999999876543
No 109
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.67 E-value=1.2e-17 Score=154.87 Aligned_cols=157 Identities=15% Similarity=0.234 Sum_probs=115.6
Q ss_pred ccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-------hhccCC
Q 017295 15 RPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPK 83 (374)
Q Consensus 15 ~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-------~~~~~~ 83 (374)
+.+|+++++. ..++|+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.+|
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q 82 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRL-----------IEPTSGEIFIDGEDIREQDPVELRRKIGYVIQ 82 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCceEEECCeEcCcCChHHhhcceEEEcc
Confidence 5688888764 56999999999999999999999 7899999999997654211 146677
Q ss_pred CC-ccccchHhhHhhhhccccCCC------C--------CC-----CCCceeEecC------------CCCCchhHHHHH
Q 017295 84 SA-VPAFLEIHDIAGLVRGAHEGQ------G--------AF-----EDPDIIHVDD------------SVDPVRDLEVIS 131 (374)
Q Consensus 84 ~~-~~~~~~v~D~~gl~~~~~~~~------~--------~~-----~~~~il~l~~------------~~dP~~~l~ild 131 (374)
.. +++.+++.+++.+........ . .+ .+..+..+++ ..+| +++++|
T Consensus 83 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p--~llllD 160 (242)
T cd03295 83 QIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADP--PLLLMD 160 (242)
T ss_pred CccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCC--CEEEec
Confidence 65 555678888776542211100 0 11 1111222322 5688 999999
Q ss_pred HHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 132 AELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 132 e~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
||++++|........+.+.+..++ +.+ |+...+..+||++ .+|++|+++..++
T Consensus 161 EPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i-~~l~~G~i~~~~~ 219 (242)
T cd03295 161 EPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRI-AIMKNGEIVQVGT 219 (242)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEE-EEEECCEEEEecC
Confidence 999999999999999999887654 444 9999999999999 8999999876543
No 110
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.67 E-value=1.7e-17 Score=152.28 Aligned_cols=153 Identities=17% Similarity=0.194 Sum_probs=111.0
Q ss_pred cccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh----------hhcc
Q 017295 16 PILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC----------QLFK 81 (374)
Q Consensus 16 ~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~----------~~~~ 81 (374)
.+|+++++. ..+||+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~ 87 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGL-----------LKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMV 87 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEEccccchhhHHHhhccEEEE
Confidence 689988864 56999999999999999999999 7899999999998764321 1456
Q ss_pred CCCC---ccccchHhhHhhhhccccC-C------C----C-----CC----CCCceeEecC------------CCCCchh
Q 017295 82 PKSA---VPAFLEIHDIAGLVRGAHE-G------Q----G-----AF----EDPDIIHVDD------------SVDPVRD 126 (374)
Q Consensus 82 ~~~~---~~~~~~v~D~~gl~~~~~~-~------~----~-----~~----~~~~il~l~~------------~~dP~~~ 126 (374)
+|.. ++..+++.|++.+...... . . . .+ .+..+..+++ ..+| +
T Consensus 88 ~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p--~ 165 (228)
T cd03257 88 FQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNP--K 165 (228)
T ss_pred ecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCC--C
Confidence 6664 3445677776643211000 0 0 0 00 1111222322 5689 9
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCcee
Q 017295 127 LEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVR 182 (374)
Q Consensus 127 l~ilde~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~ 182 (374)
++++|||++++|....+...+.+.+..++ +.+ |+...+..+||++ .+|++|+++.
T Consensus 166 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i-~~l~~G~i~~ 226 (228)
T cd03257 166 LLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRV-AVMYAGKIVE 226 (228)
T ss_pred EEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeE-EEEeCCEEEe
Confidence 99999999999999999999999887754 444 9999999999999 8899998764
No 111
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=9.2e-18 Score=159.68 Aligned_cols=158 Identities=14% Similarity=0.125 Sum_probs=117.5
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh---------hhcc
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC---------QLFK 81 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~---------~~~~ 81 (374)
+.+|+++++ |..+||+|+||||||||+++|+|. +.|++|.|.++|.++.... ..|.
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v 88 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGL-----------LKPTSGKIIIDGVDITDKKVKLSDIRKKVGLV 88 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-----------CCCCccEEEECCEECCCcCccHHHHhhceEEE
Confidence 468999876 456999999999999999999999 8899999999998764311 1466
Q ss_pred CCCC--ccccchHhhHhhhhccccCCCC--------------CC-----CCCceeEecC------------CCCCchhHH
Q 017295 82 PKSA--VPAFLEIHDIAGLVRGAHEGQG--------------AF-----EDPDIIHVDD------------SVDPVRDLE 128 (374)
Q Consensus 82 ~~~~--~~~~~~v~D~~gl~~~~~~~~~--------------~~-----~~~~il~l~~------------~~dP~~~l~ 128 (374)
+|.. .....++.|++.+......-.. .+ .+..+..+++ +.+| +++
T Consensus 89 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P--~ll 166 (287)
T PRK13637 89 FQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEP--KIL 166 (287)
T ss_pred ecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCC--CEE
Confidence 7753 2234577787765322110000 11 1222333433 5789 999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 129 VISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 129 ilde~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
++|||+.++|+.....+++.+.++.++ +.+ |++..+..+||++ .+|++|+++..++.
T Consensus 167 llDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv-~~l~~G~i~~~g~~ 229 (287)
T PRK13637 167 ILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRI-IVMNKGKCELQGTP 229 (287)
T ss_pred EEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEECCH
Confidence 999999999999999999999988754 444 9999999999999 99999999876643
No 112
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=7.6e-18 Score=160.27 Aligned_cols=157 Identities=13% Similarity=0.094 Sum_probs=115.6
Q ss_pred ccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh-----------hhh
Q 017295 15 RPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----------CQL 79 (374)
Q Consensus 15 ~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l-----------~~~ 79 (374)
+.+|+++++. ..+||+|+||||||||+++|+|. ++|++|.|.++|.++... ...
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig 88 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNAL-----------LKPSSGTITIAGYHITPETGNKNLKKLRKKVS 88 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECCEECccccccchHHHHHhceE
Confidence 4689998864 56999999999999999999999 889999999999865321 114
Q ss_pred ccCCCC--ccccchHhhHhhhhccccCCCC--------------C----CCCCceeEecC------------CCCCchhH
Q 017295 80 FKPKSA--VPAFLEIHDIAGLVRGAHEGQG--------------A----FEDPDIIHVDD------------SVDPVRDL 127 (374)
Q Consensus 80 ~~~~~~--~~~~~~v~D~~gl~~~~~~~~~--------------~----~~~~~il~l~~------------~~dP~~~l 127 (374)
|.+|.. .....++.|++.+......... . +.+..+-.+++ +.+| ++
T Consensus 89 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p--~l 166 (287)
T PRK13641 89 LVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEP--EI 166 (287)
T ss_pred EEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCC--CE
Confidence 666653 1224677887765321110000 1 11222233333 5789 99
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 128 EVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 128 ~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+++|||++++|+.......+.+.++.+++.+ |+++.+..+||++ .+|++|+++..++
T Consensus 167 LlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v-~~l~~G~i~~~g~ 228 (287)
T PRK13641 167 LCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDV-LVLEHGKLIKHAS 228 (287)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 9999999999999999999999887655544 9999999999999 9999999987664
No 113
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.66 E-value=2.8e-17 Score=150.03 Aligned_cols=178 Identities=17% Similarity=0.113 Sum_probs=114.8
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhh-----hhh--hccCC
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LCQ--LFKPK 83 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~-----l~~--~~~~~ 83 (374)
..+++++|+ |..+|++|+|||||||++++|||. +.|++|.|.++|..-.. +.. ....|
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGl-----------l~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gq 105 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGL-----------LLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQ 105 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCc-----------cccCCCeEEecCcCcchhHHHHHHHHHHHhhh
Confidence 346666665 566999999999999999999999 89999999999864221 111 11122
Q ss_pred CC-ccccchHhhHhhhhccccCC--------CC---------CCCCCceeEecC------------CCCCchhHHHHHHH
Q 017295 84 SA-VPAFLEIHDIAGLVRGAHEG--------QG---------AFEDPDIIHVDD------------SVDPVRDLEVISAE 133 (374)
Q Consensus 84 ~~-~~~~~~v~D~~gl~~~~~~~--------~~---------~~~~~~il~l~~------------~~dP~~~l~ilde~ 133 (374)
+. +...+.+.|...+.+..+.- .. .|...++-.++. .++| +++++|||
T Consensus 106 k~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p--~VLfLDEp 183 (325)
T COG4586 106 KLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPP--KVLFLDEP 183 (325)
T ss_pred hheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCC--cEEEecCC
Confidence 21 11111122222211100000 00 111111111111 4578 99999999
Q ss_pred HHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccCCChhHHHHHHhccccccCCEEE
Q 017295 134 LRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWKAADIEILNTFQLLTAKPVVY 207 (374)
Q Consensus 134 l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~~~~~~~~l~~~~~~~~kP~i~ 207 (374)
+.++|.....++++.+++..++ +.| |++..+..+|++| .+++.|+++.+|++++-. +.+. -.+-.-+
T Consensus 184 TvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv-~~I~~Gqlv~dg~l~~l~----~~f~--~~k~~~~ 256 (325)
T COG4586 184 TVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRV-LLIDQGQLVFDGTLAQLQ----EQFG--PYKEFSV 256 (325)
T ss_pred ccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhhe-EEeeCCcEeecccHHHHH----HHhC--CceEEEE
Confidence 9999999999999999887754 343 9999999999999 999999999988765422 2232 2455666
Q ss_pred EEcCC
Q 017295 208 LVNMN 212 (374)
Q Consensus 208 v~Nk~ 212 (374)
.+++.
T Consensus 257 el~~~ 261 (325)
T COG4586 257 ELKQA 261 (325)
T ss_pred EEccc
Confidence 77643
No 114
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.66 E-value=2.2e-17 Score=154.69 Aligned_cols=158 Identities=16% Similarity=0.270 Sum_probs=115.2
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-------hhccC
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKP 82 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-------~~~~~ 82 (374)
++.+|+++++. ..++|+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.+
T Consensus 14 ~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~-----------~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 82 (258)
T PRK13548 14 GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGE-----------LSPDSGEVRLNGRPLADWSPAELARRRAVLP 82 (258)
T ss_pred CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCEEEECCEEcccCCHHHhhhheEEEc
Confidence 35689888864 45999999999999999999999 7899999999997653211 24667
Q ss_pred CCC-ccccchHhhHhhhhccccCC--C---C---------CC---CCCceeEecC------------C------CCCchh
Q 017295 83 KSA-VPAFLEIHDIAGLVRGAHEG--Q---G---------AF---EDPDIIHVDD------------S------VDPVRD 126 (374)
Q Consensus 83 ~~~-~~~~~~v~D~~gl~~~~~~~--~---~---------~~---~~~~il~l~~------------~------~dP~~~ 126 (374)
|.. ++...++.|++.+....... . . .+ .+..+..+++ + .+| +
T Consensus 83 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p--~ 160 (258)
T PRK13548 83 QHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPP--R 160 (258)
T ss_pred cCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCC--C
Confidence 764 44556888877653211100 0 0 11 1122223333 3 378 9
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHH-HccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 127 LEVISAELRLKDIEFMERRIEDVEKSM-KRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 127 l~ilde~l~~~D~~~~~~~~~~i~~~~-~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
++++|||++++|+.....+.+.+.++. +++.+ |++..+..+||++ .+|++|+++..++
T Consensus 161 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i-~~l~~G~i~~~~~ 224 (258)
T PRK13548 161 WLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRI-VLLHQGRLVADGT 224 (258)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEE-EEEECCEEEeeCC
Confidence 999999999999999999999998876 44444 9999999999999 8999999886554
No 115
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.66 E-value=7.9e-18 Score=148.98 Aligned_cols=145 Identities=20% Similarity=0.198 Sum_probs=104.8
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh---------hhcc
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC---------QLFK 81 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~---------~~~~ 81 (374)
+.+|+++++ |..+||+|+||||||||+++|+|. .+|++|+|.++|.++.... ..|.
T Consensus 13 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~ 81 (178)
T cd03229 13 KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGL-----------EEPDSGSILIDGEDLTDLEDELPPLRRRIGMV 81 (178)
T ss_pred eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEEccccchhHHHHhhcEEEE
Confidence 468888875 456999999999999999999999 7899999999997654321 1355
Q ss_pred CCCC-ccccchHhhHhhhhccccCCCCCCCCCceeEecCCCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHc-cCc-
Q 017295 82 PKSA-VPAFLEIHDIAGLVRGAHEGQGAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKR-SND- 158 (374)
Q Consensus 82 ~~~~-~~~~~~v~D~~gl~~~~~~~~~~~~~~~il~l~~~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~-~~~- 158 (374)
+|.. ++...++.|+..+. .|.|+. ....+...-+.+| +++++|||+.++|.......++.+.+..++ +.+
T Consensus 82 ~q~~~~~~~~t~~~~l~~~--lS~G~~---qr~~la~al~~~p--~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~ti 154 (178)
T cd03229 82 FQDFALFPHLTVLENIALG--LSGGQQ---QRVALARALAMDP--DVLLLDEPTSALDPITRREVRALLKSLQAQLGITV 154 (178)
T ss_pred ecCCccCCCCCHHHheeec--CCHHHH---HHHHHHHHHHCCC--CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 6654 44456788876542 232321 0000000113467 999999999999999999999999887765 443
Q ss_pred ----cchHHHHHHHHHHHHHHhCC
Q 017295 159 ----KQLKIEHELCQRVKAWLQDG 178 (374)
Q Consensus 159 ----H~~~~~~~~~d~v~~~L~~G 178 (374)
|+...+..+||++ .+|++|
T Consensus 155 ii~sH~~~~~~~~~d~i-~~l~~g 177 (178)
T cd03229 155 VLVTHDLDEAARLADRV-VVLRDG 177 (178)
T ss_pred EEEeCCHHHHHHhcCEE-EEEeCC
Confidence 9999888888888 666655
No 116
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.66 E-value=1.1e-17 Score=156.66 Aligned_cols=158 Identities=18% Similarity=0.162 Sum_probs=114.0
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhh--hccCCCC-c
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ--LFKPKSA-V 86 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~--~~~~~~~-~ 86 (374)
++.+|+++++. ..++|+|+||||||||+++|+|. .+|++|.|.++|.++..... .|.+|.. +
T Consensus 24 ~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l 92 (257)
T PRK11247 24 ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGL-----------ETPSAGELLAGTAPLAEAREDTRLMFQDARL 92 (257)
T ss_pred CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCeEEEECCEEHHHhhCceEEEecCccC
Confidence 45688888764 56999999999999999999999 78999999998876543222 4666664 4
Q ss_pred cccchHhhHhhhhccc-cC----------CCCCCCCCceeEecC------------CCCCchhHHHHHHHHHhhcHHHHH
Q 017295 87 PAFLEIHDIAGLVRGA-HE----------GQGAFEDPDIIHVDD------------SVDPVRDLEVISAELRLKDIEFME 143 (374)
Q Consensus 87 ~~~~~v~D~~gl~~~~-~~----------~~~~~~~~~il~l~~------------~~dP~~~l~ilde~l~~~D~~~~~ 143 (374)
++..++.|++.+.... .. +.....+..+..+++ +.+| +++++|||++++|+....
T Consensus 93 ~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p--~lllLDEPt~~LD~~~~~ 170 (257)
T PRK11247 93 LPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRP--GLLLLDEPLGALDALTRI 170 (257)
T ss_pred CCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHH
Confidence 5556787776653110 00 000011112222332 5688 999999999999999999
Q ss_pred HHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 144 RRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 144 ~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
.+.+.+.+..++ +.+ |+...+..+||++ .+|++|+++..++
T Consensus 171 ~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i-~~l~~G~i~~~~~ 217 (257)
T PRK11247 171 EMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRV-LLIEEGKIGLDLT 217 (257)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEeecc
Confidence 999999887543 443 9999999999999 8899999876543
No 117
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.66 E-value=1.4e-17 Score=152.62 Aligned_cols=159 Identities=13% Similarity=0.080 Sum_probs=115.1
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh---hhhccCCCC-
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL---CQLFKPKSA- 85 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l---~~~~~~~~~- 85 (374)
++.+|+++++ |..+||+|+||||||||+++|+|. ++|++|.|.++|.++... ...|.+|..
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~ 80 (223)
T TIGR03740 12 KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGI-----------LRPTSGEIIFDGHPWTRKDLHKIGSLIESPP 80 (223)
T ss_pred CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEeccccccccEEEEcCCCC
Confidence 3568888775 556999999999999999999999 789999999998765321 124566654
Q ss_pred ccccchHhhHhhhhccccCCC--C--------CC---CCCceeEecC------------CCCCchhHHHHHHHHHhhcHH
Q 017295 86 VPAFLEIHDIAGLVRGAHEGQ--G--------AF---EDPDIIHVDD------------SVDPVRDLEVISAELRLKDIE 140 (374)
Q Consensus 86 ~~~~~~v~D~~gl~~~~~~~~--~--------~~---~~~~il~l~~------------~~dP~~~l~ilde~l~~~D~~ 140 (374)
+++.+++.|++.+........ . .+ .+..+..+++ +.+| +++++|||++++|..
T Consensus 81 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p--~llllDEP~~~LD~~ 158 (223)
T TIGR03740 81 LYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHP--KLLILDEPTNGLDPI 158 (223)
T ss_pred ccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCC--CEEEECCCccCCCHH
Confidence 455567777765432111100 0 01 0111112222 5688 999999999999999
Q ss_pred HHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 141 FMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 141 ~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
..+.+++.+.+..+++.+ |+...+..+||++ .+|++|+++..++.
T Consensus 159 ~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i-~~l~~g~i~~~~~~ 208 (223)
T TIGR03740 159 GIQELRELIRSFPEQGITVILSSHILSEVQQLADHI-GIISEGVLGYQGKI 208 (223)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEE-EEEeCCEEEEecCh
Confidence 999999999887655544 9999999999999 88999998876654
No 118
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.66 E-value=1e-17 Score=164.40 Aligned_cols=160 Identities=13% Similarity=0.137 Sum_probs=120.1
Q ss_pred ccccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCc----chhhh--------
Q 017295 13 AERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDE----RFEWL-------- 76 (374)
Q Consensus 13 ~~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~----~~~~l-------- 76 (374)
+...+|+++++. ..++|+|+||||||||+++|+|. ++|++|+|.++|. ++...
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl-----------~~p~~G~I~idG~~~~~~i~~~~~~~l~~~ 103 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGL-----------NPVSRGSVLVKDGDGSIDVANCDAATLRRL 103 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCCcEEEECCEecccccccCCHHHHHHH
Confidence 467788988864 45999999999999999999999 8899999999985 32111
Q ss_pred ---hhhccCCCC-ccccchHhhHhhhhccccC---CCC--------------CCCCCceeEecC------------CCCC
Q 017295 77 ---CQLFKPKSA-VPAFLEIHDIAGLVRGAHE---GQG--------------AFEDPDIIHVDD------------SVDP 123 (374)
Q Consensus 77 ---~~~~~~~~~-~~~~~~v~D~~gl~~~~~~---~~~--------------~~~~~~il~l~~------------~~dP 123 (374)
...|.+|.. +++.+++.|++.+...... ... .+.+..+..+++ +.+|
T Consensus 104 r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P 183 (382)
T TIGR03415 104 RTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDA 183 (382)
T ss_pred hcCCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 124677776 6667899998876532110 000 111222223333 6789
Q ss_pred chhHHHHHHHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 124 VRDLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 124 ~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
+++++|||++++|+.....+.+.+.++.++ +.+ |+++++..+||++ .+|++|+++..++.
T Consensus 184 --~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI-~vl~~G~iv~~g~~ 249 (382)
T TIGR03415 184 --DILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRI-AIMEGGRIIQHGTP 249 (382)
T ss_pred --CEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEecCH
Confidence 999999999999999999999999887654 444 9999999999999 99999999876643
No 119
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.66 E-value=2.1e-17 Score=155.40 Aligned_cols=158 Identities=23% Similarity=0.310 Sum_probs=115.0
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh--------h--hh
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------C--QL 79 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l--------~--~~ 79 (374)
++.+|+++++. ..+||+|+||||||||+++|+|. .+|++|.|.++|.++... . ..
T Consensus 23 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~ 91 (265)
T TIGR02769 23 RAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGL-----------EKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQ 91 (265)
T ss_pred ceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEEccccCHHHHHHHhhceE
Confidence 46789998865 46999999999999999999999 889999999999765421 1 24
Q ss_pred ccCCCC---ccccchHhhHhhhhcc----ccCCC---C--------CC----CCCceeEecC------------CCCCch
Q 017295 80 FKPKSA---VPAFLEIHDIAGLVRG----AHEGQ---G--------AF----EDPDIIHVDD------------SVDPVR 125 (374)
Q Consensus 80 ~~~~~~---~~~~~~v~D~~gl~~~----~~~~~---~--------~~----~~~~il~l~~------------~~dP~~ 125 (374)
|.+|.. ++...++.|++.+... ..... . .+ .+..+..+++ +.+|
T Consensus 92 ~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p-- 169 (265)
T TIGR02769 92 LVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKP-- 169 (265)
T ss_pred EEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCC--
Confidence 666653 4445677776643211 00000 0 11 1112222232 5689
Q ss_pred hHHHHHHHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 126 DLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 126 ~l~ilde~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+++++|||++++|+......++.+.++.+. +.+ |++..+..+||++ .+|++|+++..++
T Consensus 170 ~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i-~~l~~G~i~~~g~ 234 (265)
T TIGR02769 170 KLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRV-AVMDKGQIVEECD 234 (265)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEE-EEEeCCEEEEECC
Confidence 999999999999999999999999887654 444 9999999999999 8999999886654
No 120
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.66 E-value=2e-17 Score=149.40 Aligned_cols=150 Identities=14% Similarity=0.168 Sum_probs=111.3
Q ss_pred ccccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccC---CceeEEEeCCcchhhhh------hh
Q 017295 13 AERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE---PNEARVNIPDERFEWLC------QL 79 (374)
Q Consensus 13 ~~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~---p~~G~i~~~g~~~~~l~------~~ 79 (374)
+++.+|+++++ |..++|+|+||||||||+++|+|. .+ |++|.|.++|.++.... ..
T Consensus 18 ~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~ 86 (202)
T cd03233 18 SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANR-----------TEGNVSVEGDIHYNGIPYKEFAEKYPGEII 86 (202)
T ss_pred CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhccc-----------CCCCCCcceEEEECCEECccchhhhcceEE
Confidence 35678998765 556999999999999999999999 66 88999999998764321 14
Q ss_pred ccCCCC-ccccchHhhHhhhhccccCCCCCCCCCceeEecC------------CCCCchhHHHHHHHHHhhcHHHHHHHH
Q 017295 80 FKPKSA-VPAFLEIHDIAGLVRGAHEGQGAFEDPDIIHVDD------------SVDPVRDLEVISAELRLKDIEFMERRI 146 (374)
Q Consensus 80 ~~~~~~-~~~~~~v~D~~gl~~~~~~~~~~~~~~~il~l~~------------~~dP~~~l~ilde~l~~~D~~~~~~~~ 146 (374)
|.+|.. ++..+++.|+..+..... .+..+..++. +.+| +++++|||+.++|.......+
T Consensus 87 ~~~q~~~~~~~~tv~~~l~~~~~~~------~~~~~~~LS~Ge~qrl~laral~~~p--~llllDEPt~~LD~~~~~~~~ 158 (202)
T cd03233 87 YVSEEDVHFPTLTVRETLDFALRCK------GNEFVRGISGGERKRVSIAEALVSRA--SVLCWDNSTRGLDSSTALEIL 158 (202)
T ss_pred EEecccccCCCCcHHHHHhhhhhhc------cccchhhCCHHHHHHHHHHHHHhhCC--CEEEEcCCCccCCHHHHHHHH
Confidence 666664 555678888877643211 0111111221 4578 999999999999999999999
Q ss_pred HHHHHHHHc-cCc------cchHHHHHHHHHHHHHHhCCCcee
Q 017295 147 EDVEKSMKR-SND------KQLKIEHELCQRVKAWLQDGKDVR 182 (374)
Q Consensus 147 ~~i~~~~~~-~~~------H~~~~~~~~~d~v~~~L~~G~iv~ 182 (374)
+.+.+..++ +.+ |+.+.+..+||++ .+|++|+++.
T Consensus 159 ~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i-~~l~~G~i~~ 200 (202)
T cd03233 159 KCIRTMADVLKTTTFVSLYQASDEIYDLFDKV-LVLYEGRQIY 200 (202)
T ss_pred HHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeE-EEEECCEEEe
Confidence 999987654 332 5567888899999 8899998764
No 121
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=2.1e-17 Score=153.25 Aligned_cols=158 Identities=16% Similarity=0.240 Sum_probs=113.7
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchh-----------hh--
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE-----------WL-- 76 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~-----------~l-- 76 (374)
.+.+|+++++. ..++|+|+||||||||+++|+|. ..|++|.|.++|.++. ..
T Consensus 14 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 82 (242)
T PRK11124 14 AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLL-----------EMPRSGTLNIAGNHFDFSKTPSDKAIRELRR 82 (242)
T ss_pred CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEecccccccchhhHHHHHh
Confidence 35689888764 56999999999999999999999 7899999999997652 01
Q ss_pred hhhccCCCC-ccccchHhhHhhhhc----cccC--------------CCCCCCCCceeEecC------------CCCCch
Q 017295 77 CQLFKPKSA-VPAFLEIHDIAGLVR----GAHE--------------GQGAFEDPDIIHVDD------------SVDPVR 125 (374)
Q Consensus 77 ~~~~~~~~~-~~~~~~v~D~~gl~~----~~~~--------------~~~~~~~~~il~l~~------------~~dP~~ 125 (374)
...|.+|.. ++..+++.++..+.. +... +...+.+..+..+++ +.+|
T Consensus 83 ~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p-- 160 (242)
T PRK11124 83 NVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEP-- 160 (242)
T ss_pred heEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCC--
Confidence 124667765 455567777664211 0000 000111111222222 5688
Q ss_pred hHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 126 DLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 126 ~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+++++|||++++|.......++.+.+..+++.+ |+...+..+||++ .+|++|+++..++
T Consensus 161 ~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i-~~l~~g~i~~~~~ 224 (242)
T PRK11124 161 QVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRV-VYMENGHIVEQGD 224 (242)
T ss_pred CEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEE-EEEECCEEEEeCC
Confidence 999999999999999999999999887655554 9999999999999 8899999886554
No 122
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=1.2e-17 Score=159.00 Aligned_cols=159 Identities=14% Similarity=0.095 Sum_probs=116.5
Q ss_pred ccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhh---------hh--hh
Q 017295 15 RPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW---------LC--QL 79 (374)
Q Consensus 15 ~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~---------l~--~~ 79 (374)
+.+|+++++. ..++|+|+||||||||+++|+|. +.|++|.|.++|.++.. .. ..
T Consensus 19 ~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig 87 (288)
T PRK13643 19 SRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGL-----------LQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVG 87 (288)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcC-----------CCCCCcEEEECCEECccccccccHHHHHhhEE
Confidence 3589998875 46999999999999999999999 88999999999987531 11 14
Q ss_pred ccCCCC--ccccchHhhHhhhhccccCCCC--------------C----CCCCceeEecC------------CCCCchhH
Q 017295 80 FKPKSA--VPAFLEIHDIAGLVRGAHEGQG--------------A----FEDPDIIHVDD------------SVDPVRDL 127 (374)
Q Consensus 80 ~~~~~~--~~~~~~v~D~~gl~~~~~~~~~--------------~----~~~~~il~l~~------------~~dP~~~l 127 (374)
|.+|.. .....++.|++.+......-.. . +.+..+..+++ +.+| ++
T Consensus 88 ~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p--~i 165 (288)
T PRK13643 88 VVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEP--EV 165 (288)
T ss_pred EEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCC--CE
Confidence 566643 1222477777765432110000 1 11222333333 5789 99
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCCC
Q 017295 128 EVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 187 (374)
Q Consensus 128 ~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~~ 187 (374)
+++|||++++|+.....+.+.+.++.+++.+ |++..+..+||+| .+|++|+++..++.+
T Consensus 166 llLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri-~~l~~G~i~~~g~~~ 229 (288)
T PRK13643 166 LVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYV-YLLEKGHIISCGTPS 229 (288)
T ss_pred EEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEE-EEEECCEEEEECCHH
Confidence 9999999999999999999999887655554 9999999999999 999999998776543
No 123
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.66 E-value=2.1e-17 Score=154.65 Aligned_cols=158 Identities=15% Similarity=0.214 Sum_probs=116.0
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhh--------------
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------------- 75 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~-------------- 75 (374)
++.+|+++++. ..++|+|+||||||||+++|+|. .+|++|.|.++|.++..
T Consensus 17 ~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 85 (257)
T PRK10619 17 EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFL-----------EKPSEGSIVVNGQTINLVRDKDGQLKVADKN 85 (257)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeEEEECCEEcccccccccccccccch
Confidence 35688888764 56999999999999999999999 78999999999976531
Q ss_pred ----h--hhhccCCCC-ccccchHhhHhhhhc-cccCCC------C--------CC----CCCceeEecC----------
Q 017295 76 ----L--CQLFKPKSA-VPAFLEIHDIAGLVR-GAHEGQ------G--------AF----EDPDIIHVDD---------- 119 (374)
Q Consensus 76 ----l--~~~~~~~~~-~~~~~~v~D~~gl~~-~~~~~~------~--------~~----~~~~il~l~~---------- 119 (374)
. ...|.+|.. ++..+++.|+..+.. ...... . .+ .+.....+++
T Consensus 86 ~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~lar 165 (257)
T PRK10619 86 QLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIAR 165 (257)
T ss_pred HHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHH
Confidence 0 114667765 455578887765421 000000 0 11 1222233333
Q ss_pred --CCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 120 --SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 120 --~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+.+| +++++|||++++|+.......+.+.++.+.+.+ |+...+..+||++ .+|++|+++..++
T Consensus 166 al~~~p--~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i-~~l~~G~i~~~~~ 235 (257)
T PRK10619 166 ALAMEP--EVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHV-IFLHQGKIEEEGA 235 (257)
T ss_pred HHhcCC--CEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEE-EEEECCEEEEeCC
Confidence 5689 999999999999999999999999887655554 9999999999999 8999999986654
No 124
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.66 E-value=2.5e-17 Score=154.15 Aligned_cols=159 Identities=19% Similarity=0.272 Sum_probs=117.1
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-------hhccC
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKP 82 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-------~~~~~ 82 (374)
++.+|+++++ |..++|+|+||||||||+++|+|. .+|++|.|.++|.++.... ..|.+
T Consensus 13 ~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 81 (256)
T TIGR03873 13 GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGA-----------LRPDAGTVDLAGVDLHGLSRRARARRVALVE 81 (256)
T ss_pred CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC-----------CCCCCCEEEECCEEcccCCHHHHhhheEEec
Confidence 3568888875 456999999999999999999999 7899999999997754311 24667
Q ss_pred CCC-ccccchHhhHhhhhcc-c---cC-C--C---C-----------CCCCCceeEecC------------CCCCchhHH
Q 017295 83 KSA-VPAFLEIHDIAGLVRG-A---HE-G--Q---G-----------AFEDPDIIHVDD------------SVDPVRDLE 128 (374)
Q Consensus 83 ~~~-~~~~~~v~D~~gl~~~-~---~~-~--~---~-----------~~~~~~il~l~~------------~~dP~~~l~ 128 (374)
|.. ++..+++.+++.+... . .. . . . ...+..+..+++ +.+| +++
T Consensus 82 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p--~ll 159 (256)
T TIGR03873 82 QDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEP--KLL 159 (256)
T ss_pred ccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCC--CEE
Confidence 765 4555678887755311 0 00 0 0 0 011122223333 5689 999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 129 VISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 129 ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
++|||++++|........+.+.++.+++.+ |++..+..+||++ .+|++|+++..++.
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i-~~l~~G~i~~~g~~ 221 (256)
T TIGR03873 160 LLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHV-VVLDGGRVVAAGPP 221 (256)
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE-EEEeCCCEEEecCH
Confidence 999999999999999999999887655544 9999999999999 99999999876543
No 125
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.66 E-value=1.8e-17 Score=153.17 Aligned_cols=157 Identities=16% Similarity=0.147 Sum_probs=113.2
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh------hhccCC
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC------QLFKPK 83 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~------~~~~~~ 83 (374)
++.+|+++++ |..+||+|+||||||||+++|+|. .+|++|.|.++|.++.... ..|.+|
T Consensus 13 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q 81 (236)
T TIGR03864 13 ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRL-----------YVAQEGQISVAGHDLRRAPRAALARLGVVFQ 81 (236)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------cCCCceEEEECCEEcccCChhhhhhEEEeCC
Confidence 3568888775 556999999999999999999999 7899999999997653221 246677
Q ss_pred CC-ccccchHhhHhhhhccccCCC------C--------CC---CCCceeEecC------------CCCCchhHHHHHHH
Q 017295 84 SA-VPAFLEIHDIAGLVRGAHEGQ------G--------AF---EDPDIIHVDD------------SVDPVRDLEVISAE 133 (374)
Q Consensus 84 ~~-~~~~~~v~D~~gl~~~~~~~~------~--------~~---~~~~il~l~~------------~~dP~~~l~ilde~ 133 (374)
.. ++...++.+++.+........ . .+ .+..+..+++ +.+| +++++|||
T Consensus 82 ~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p--~llllDEP 159 (236)
T TIGR03864 82 QPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRP--ALLLLDEP 159 (236)
T ss_pred CCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCC--CEEEEcCC
Confidence 65 445677777775532211100 0 01 1111222222 5789 99999999
Q ss_pred HHhhcHHHHHHHHHHHHHHHH-ccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 134 LRLKDIEFMERRIEDVEKSMK-RSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 134 l~~~D~~~~~~~~~~i~~~~~-~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
++++|+.....+.+.+.+..+ ++.+ |++..+.. ||++ .+|++|+++..++
T Consensus 160 ~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i-~~l~~G~i~~~~~ 215 (236)
T TIGR03864 160 TVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRL-VVLHRGRVLADGA 215 (236)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEE-EEEeCCeEEEeCC
Confidence 999999999999999988764 3444 99988864 9999 8899999876543
No 126
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea. Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=99.65 E-value=1.5e-16 Score=120.05 Aligned_cols=54 Identities=26% Similarity=0.441 Sum_probs=48.7
Q ss_pred eeeEEecCCCChhHhhhhcchhhhcceEEEEEecchhhhhcCChHHHhhcCcccccCCcceecCCCEEEEE
Q 017295 295 VKCWQIRRQTKAPQAAGTIHTDFERGFICAEVMKFDDLKELGSEPAVKAAGKYKQEGKTYVVQDGDIIFFK 365 (374)
Q Consensus 295 ~~~~~i~~gsta~~~a~~IHsd~~~~f~~A~v~~~~d~~~~~~~~~~~~~g~~~~~g~dy~~~dgDii~~~ 365 (374)
.+||++|+|+||.|+|++||+||.++|++|.++ | .| |++|+||+|+|||||+|.
T Consensus 22 ~d~~~l~~GaTv~D~A~~IHtdi~~~f~~Ai~~--------------k-~~--~~vg~~~~L~dgDvV~Ii 75 (76)
T cd01669 22 PDAFLLPKGSTARDLAYAIHTDIGDGFLHAIDA--------------R-TG--RRVGEDYELKHRDVIKIV 75 (76)
T ss_pred cceEEECCCCCHHHHHHHHHHHHHhcceeeEEe--------------e-CC--EEeCCCcEecCCCEEEEe
Confidence 369999999999999999999999999999653 3 34 999999999999999984
No 127
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.65 E-value=1.6e-16 Score=138.62 Aligned_cols=159 Identities=17% Similarity=0.195 Sum_probs=123.1
Q ss_pred ccccccccCCc----eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh--hhhccCCCC-cc
Q 017295 15 RPILGRFSSHL----KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--CQLFKPKSA-VP 87 (374)
Q Consensus 15 ~~vL~~i~~~~----~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l--~~~~~~~~~-~~ 87 (374)
+.+|++++.++ .++++||+|||||||+|+++|. .+|..|.|.++|.++.-- .+..+.|+. +.
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf-----------~~P~~G~i~l~~r~i~gPgaergvVFQ~~~Ll 86 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGF-----------VTPSRGSIQLNGRRIEGPGAERGVVFQNEALL 86 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcC-----------cCcccceEEECCEeccCCCccceeEeccCccc
Confidence 56899988754 4999999999999999999999 889999999999887542 235666665 67
Q ss_pred ccchHhhHhhhhccccCCCC-----------------CCCCCceeEecC------------CCCCchhHHHHHHHHHhhc
Q 017295 88 AFLEIHDIAGLVRGAHEGQG-----------------AFEDPDIIHVDD------------SVDPVRDLEVISAELRLKD 138 (374)
Q Consensus 88 ~~~~v~D~~gl~~~~~~~~~-----------------~~~~~~il~l~~------------~~dP~~~l~ilde~l~~~D 138 (374)
+.++++|++.++.....-.+ .+.+..+.++++ +.+| +++++|||+..+|
T Consensus 87 PWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP--~~LlLDEPfgAlD 164 (259)
T COG4525 87 PWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEP--QLLLLDEPFGALD 164 (259)
T ss_pred hhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCc--ceEeecCchhhHH
Confidence 78999999988643322111 445667778877 6899 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHc-cC-----ccchHHHHHHHHHHHHHHhC--CCceeccCCC
Q 017295 139 IEFMERRIEDVEKSMKR-SN-----DKQLKIEHELCQRVKAWLQD--GKDVRLGDWK 187 (374)
Q Consensus 139 ~~~~~~~~~~i~~~~~~-~~-----~H~~~~~~~~~d~v~~~L~~--G~iv~~~~~~ 187 (374)
.-+.+...+.+..+-+. ++ ||+++++.-+++++ .+|.- |+++...+++
T Consensus 165 a~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrL-vvlsp~pgRvv~~~~~d 220 (259)
T COG4525 165 ALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRL-VVLSPGPGRVVERLPLD 220 (259)
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhhee-EEecCCCceeeEecCCC
Confidence 99988887777655543 33 39999999999998 77753 5677655444
No 128
>COG1159 Era GTPase [General function prediction only]
Probab=99.65 E-value=2.6e-16 Score=145.94 Aligned_cols=155 Identities=25% Similarity=0.281 Sum_probs=100.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhcccc
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~~-s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~~~~ 103 (374)
..|||||+||+|||||+|.|.|.++++ |+.|.||+....|.+..++.+ +.++||||+....+
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~Q-----------------iIfvDTPGih~pk~ 69 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQ-----------------IIFVDTPGIHKPKH 69 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCce-----------------EEEEeCCCCCCcch
Confidence 348999999999999999999999987 999999999999999877543 78999999965311
Q ss_pred CCCCCCCCCceeEecCCCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCccchHHHHHHHHHHHHHHhCCCce-e
Q 017295 104 EGQGAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV-R 182 (374)
Q Consensus 104 ~~~~~~~~~~il~l~~~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~H~~~~~~~~~d~v~~~L~~G~iv-~ 182 (374)
..-+.+.+.+.. ...-+|-+ .+ ++ .
T Consensus 70 ----------------------------------------~l~~~m~~~a~~--------sl~dvDli-lf-----vvd~ 95 (298)
T COG1159 70 ----------------------------------------ALGELMNKAARS--------ALKDVDLI-LF-----VVDA 95 (298)
T ss_pred ----------------------------------------HHHHHHHHHHHH--------HhccCcEE-EE-----EEec
Confidence 011111111100 01112222 11 11 1
Q ss_pred ccCCChhHHHHHHhccccccCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCC
Q 017295 183 LGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADM 253 (374)
Q Consensus 183 ~~~~~~~~~~~l~~~~~~~~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l 253 (374)
...+..+|...++.+.. +..|+|+++||+|.-. ......+.++.+....+...++|+||+++.++..|
T Consensus 96 ~~~~~~~d~~il~~lk~-~~~pvil~iNKID~~~--~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L 163 (298)
T COG1159 96 DEGWGPGDEFILEQLKK-TKTPVILVVNKIDKVK--PKTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTL 163 (298)
T ss_pred cccCCccHHHHHHHHhh-cCCCeEEEEEccccCC--cHHHHHHHHHHHHhhCCcceEEEeeccccCCHHHH
Confidence 23466666666666654 4689999999997422 11112233333333344668999999999998777
No 129
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=3e-17 Score=154.41 Aligned_cols=158 Identities=16% Similarity=0.254 Sum_probs=115.3
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-------hhccC
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKP 82 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-------~~~~~ 82 (374)
++.+|+++++. ..+||+|+||||||||+++|+|. .+|++|.|.++|.++.... ..|.+
T Consensus 23 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 91 (265)
T PRK10575 23 GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRH-----------QPPSEGEILLDAQPLESWSSKAFARKVAYLP 91 (265)
T ss_pred CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCC-----------CCCCCCEEEECCEehhhCCHHHHhhheEEec
Confidence 35789988865 55999999999999999999999 7899999999997753211 24666
Q ss_pred CCC-ccccchHhhHhhhhccccCC----C-C-------------CC---CCCceeEecC------------CCCCchhHH
Q 017295 83 KSA-VPAFLEIHDIAGLVRGAHEG----Q-G-------------AF---EDPDIIHVDD------------SVDPVRDLE 128 (374)
Q Consensus 83 ~~~-~~~~~~v~D~~gl~~~~~~~----~-~-------------~~---~~~~il~l~~------------~~dP~~~l~ 128 (374)
|.. +++.+++.|++.+......+ . . .+ .+..+-.+++ +.+| +++
T Consensus 92 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p--~ll 169 (265)
T PRK10575 92 QQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDS--RCL 169 (265)
T ss_pred cCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCC--CEE
Confidence 663 44556777777653210000 0 0 11 1111222332 5789 999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 129 VISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 129 ilde~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
++|||++++|+.....+++.+.++.+. +.+ |++..+..+||++ .+|++|+++..++
T Consensus 170 lLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i-~~l~~G~i~~~~~ 231 (265)
T PRK10575 170 LLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYL-VALRGGEMIAQGT 231 (265)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE-EEEECCeEEEecC
Confidence 999999999999999999999887654 444 9999999999999 8999999886654
No 130
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.65 E-value=1.5e-17 Score=149.24 Aligned_cols=151 Identities=17% Similarity=0.179 Sum_probs=111.5
Q ss_pred ccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCccc--CCceeEEEeCCcchhhh----hhhccCCC
Q 017295 15 RPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTI--EPNEARVNIPDERFEWL----CQLFKPKS 84 (374)
Q Consensus 15 ~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~--~p~~G~i~~~g~~~~~l----~~~~~~~~ 84 (374)
+.+|+++++. ..++|+|+||||||||+++|+|. . .|+.|.|.++|.++... ...|.+|.
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl-----------~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~ 90 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGR-----------RTGLGVSGEVLINGRPLDKRSFRKIIGYVPQD 90 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCceEEEECCEeCchHhhhheEEEccCc
Confidence 5689988865 46999999999999999999999 7 89999999999876421 12466666
Q ss_pred C-ccccchHhhHhhhhc---cccCCCCCCCCCceeEecCCCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc--
Q 017295 85 A-VPAFLEIHDIAGLVR---GAHEGQGAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-- 158 (374)
Q Consensus 85 ~-~~~~~~v~D~~gl~~---~~~~~~~~~~~~~il~l~~~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-- 158 (374)
. +++.+++.|+..+.. ..|.|+. ....+...-+.+| +++++|||++++|........+.+.+..+++.+
T Consensus 91 ~~~~~~~t~~~~i~~~~~~~~LS~G~~---qrv~laral~~~p--~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tii 165 (194)
T cd03213 91 DILHPTLTVRETLMFAAKLRGLSGGER---KRVSIALELVSNP--SLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTII 165 (194)
T ss_pred ccCCCCCcHHHHHHHHHHhccCCHHHH---HHHHHHHHHHcCC--CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 5 555678888876543 2333322 0000000014468 899999999999999999999999887655544
Q ss_pred ---cchH-HHHHHHHHHHHHHhCCCcee
Q 017295 159 ---KQLK-IEHELCQRVKAWLQDGKDVR 182 (374)
Q Consensus 159 ---H~~~-~~~~~~d~v~~~L~~G~iv~ 182 (374)
|+.. .+..+||++ .+|++|+++.
T Consensus 166 i~sh~~~~~~~~~~d~v-~~l~~G~i~~ 192 (194)
T cd03213 166 CSIHQPSSEIFELFDKL-LLLSQGRVIY 192 (194)
T ss_pred EEecCchHHHHHhcCEE-EEEeCCEEEe
Confidence 9986 677889999 8888888753
No 131
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.65 E-value=4.9e-17 Score=141.21 Aligned_cols=159 Identities=16% Similarity=0.134 Sum_probs=121.6
Q ss_pred cccccccccccCCce----EEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhh---------
Q 017295 12 PAERPILGRFSSHLK----IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ--------- 78 (374)
Q Consensus 12 ~~~~~vL~~i~~~~~----vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~--------- 78 (374)
+.++++|+++++.+. +-|+||+|||||||+++|++. ..|+.|.|.++|.++..+..
T Consensus 12 ~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~-----------e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 12 PGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGE-----------ERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred CCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhh-----------hcCCCceEEECCeecccccccccchhhhe
Confidence 456779999987654 899999999999999999999 88999999999998765443
Q ss_pred -hccCCCC-ccccchHhhHhhhhccccCCCC--------------CC---CCCceeEecC------------CCCCchhH
Q 017295 79 -LFKPKSA-VPAFLEIHDIAGLVRGAHEGQG--------------AF---EDPDIIHVDD------------SVDPVRDL 127 (374)
Q Consensus 79 -~~~~~~~-~~~~~~v~D~~gl~~~~~~~~~--------------~~---~~~~il~l~~------------~~dP~~~l 127 (374)
+++.|+. +..+.++.|++.+....-+... .+ .+.....+++ ..+| .+
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P--~v 158 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQP--AV 158 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCC--Ce
Confidence 4566665 6667889998887432211111 11 1112223333 5689 99
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceecc
Q 017295 128 EVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLG 184 (374)
Q Consensus 128 ~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~ 184 (374)
++-|||+.++|+.....++..+.+..+.|.| |+...+..+-.++ ..|++|+++++.
T Consensus 159 LlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rv-l~l~~Grl~~d~ 219 (223)
T COG2884 159 LLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRV-LALEDGRLVRDE 219 (223)
T ss_pred EeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcE-EEEeCCEEEecc
Confidence 9999999999999999999999999877765 9998888887788 888999988653
No 132
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=2e-17 Score=156.99 Aligned_cols=160 Identities=15% Similarity=0.147 Sum_probs=117.1
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhh-------hh--hhc
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLF 80 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~-------l~--~~~ 80 (374)
++.+|+++++. ..+||+|+||||||||+++|+|. .+|++|.|.++|.++.. +. ..|
T Consensus 18 ~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl-----------~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~ 86 (283)
T PRK13636 18 GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGI-----------LKPSSGRILFDGKPIDYSRKGLMKLRESVGM 86 (283)
T ss_pred CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCccEEEECCEECCCCcchHHHHHhhEEE
Confidence 35689888764 56999999999999999999999 88999999999987631 11 146
Q ss_pred cCCCC--ccccchHhhHhhhhccccCCC-----C------------CCCCCceeEecC------------CCCCchhHHH
Q 017295 81 KPKSA--VPAFLEIHDIAGLVRGAHEGQ-----G------------AFEDPDIIHVDD------------SVDPVRDLEV 129 (374)
Q Consensus 81 ~~~~~--~~~~~~v~D~~gl~~~~~~~~-----~------------~~~~~~il~l~~------------~~dP~~~l~i 129 (374)
.+|.. .....++.|++.+........ . .+.+..+-.+++ ..+| ++++
T Consensus 87 v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p--~lLi 164 (283)
T PRK13636 87 VFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEP--KVLV 164 (283)
T ss_pred EecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCC--CEEE
Confidence 67764 223457788776532111000 0 111222223332 5789 9999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccCCC
Q 017295 130 ISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 187 (374)
Q Consensus 130 lde~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~~ 187 (374)
+|||+.++|+.....+++.+.++.++ +.+ |++..+..+||++ .+|++|+++..++.+
T Consensus 165 lDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri-~~l~~G~i~~~g~~~ 227 (283)
T PRK13636 165 LDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNV-FVMKEGRVILQGNPK 227 (283)
T ss_pred EeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEE-EEEECCEEEEeCCHH
Confidence 99999999999999999999888754 444 9999999999999 999999998776543
No 133
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=2.3e-17 Score=156.18 Aligned_cols=158 Identities=16% Similarity=0.161 Sum_probs=114.2
Q ss_pred ccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-------hhccCC
Q 017295 15 RPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPK 83 (374)
Q Consensus 15 ~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-------~~~~~~ 83 (374)
+.+|+++++. ..+||+|+||||||||+++|+|. .+|++|.|.++|.++.... ..|.+|
T Consensus 17 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q 85 (277)
T PRK13652 17 KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGI-----------LKPTSGSVLIRGEPITKENIREVRKFVGLVFQ 85 (277)
T ss_pred CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCEECCcCCHHHHHhheEEEec
Confidence 4589988865 56999999999999999999999 8899999999997653211 145566
Q ss_pred CC--ccccchHhhHhhhhccccC-C----------------CCCCCCCceeEecC------------CCCCchhHHHHHH
Q 017295 84 SA--VPAFLEIHDIAGLVRGAHE-G----------------QGAFEDPDIIHVDD------------SVDPVRDLEVISA 132 (374)
Q Consensus 84 ~~--~~~~~~v~D~~gl~~~~~~-~----------------~~~~~~~~il~l~~------------~~dP~~~l~ilde 132 (374)
.. .....++.|++.+...... . ...+.+..+..+++ +.+| +++++||
T Consensus 86 ~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p--~llilDE 163 (277)
T PRK13652 86 NPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEP--QVLVLDE 163 (277)
T ss_pred CcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCC--CEEEEeC
Confidence 53 1224577776654221100 0 00111112222332 5789 9999999
Q ss_pred HHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 133 ELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 133 ~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
|+.++|+......++.+.++.++ +.+ |++..+..+||++ .+|++|+++..++.
T Consensus 164 Pt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv-~~l~~G~i~~~g~~ 222 (277)
T PRK13652 164 PTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYI-YVMDKGRIVAYGTV 222 (277)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEE-EEEECCeEEEECCH
Confidence 99999999999999999887754 444 9999999999999 99999999876643
No 134
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=2.8e-17 Score=153.60 Aligned_cols=158 Identities=11% Similarity=0.133 Sum_probs=115.7
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh--------hhcc
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC--------QLFK 81 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~--------~~~~ 81 (374)
++.+|+++++ |..++|+|+||||||||+++|+|. .+|++|.|.++|.++.... ..|.
T Consensus 17 ~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 85 (255)
T PRK11300 17 GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGF-----------YKPTGGTILLRGQHIEGLPGHQIARMGVVRT 85 (255)
T ss_pred CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCC-----------cCCCcceEEECCEECCCCCHHHHHhcCeEEe
Confidence 4568888885 455999999999999999999999 8899999999998653211 1355
Q ss_pred CCCC-ccccchHhhHhhhhccc----------c------CC--C---C-----------CCCCCceeEecC---------
Q 017295 82 PKSA-VPAFLEIHDIAGLVRGA----------H------EG--Q---G-----------AFEDPDIIHVDD--------- 119 (374)
Q Consensus 82 ~~~~-~~~~~~v~D~~gl~~~~----------~------~~--~---~-----------~~~~~~il~l~~--------- 119 (374)
+|.. ++..+++.|++.+.... . .. . . .+.+..+-.+++
T Consensus 86 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la 165 (255)
T PRK11300 86 FQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIA 165 (255)
T ss_pred ccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHH
Confidence 7765 55667888877653210 0 00 0 0 000111111222
Q ss_pred ---CCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 120 ---SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 120 ---~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+.+| +++++|||++++|.......++.+.++.++ +.+ |++..+..+||++ .+|++|+++..++
T Consensus 166 ~al~~~p--~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i-~~l~~g~i~~~~~ 237 (255)
T PRK11300 166 RCMVTQP--EILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRI-YVVNQGTPLANGT 237 (255)
T ss_pred HHHhcCC--CEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEE-EEEECCeEEecCC
Confidence 5689 999999999999999999999999887654 444 9999999999999 8999999886654
No 135
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=2.7e-17 Score=153.88 Aligned_cols=158 Identities=13% Similarity=0.138 Sum_probs=112.6
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh--hhccCCCC-c
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC--QLFKPKSA-V 86 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~--~~~~~~~~-~ 86 (374)
++.+|+++++ |..++|+|+||||||||+++|+|. .+|++|.|.++|.++.... ..|.+|.. +
T Consensus 13 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~ 81 (255)
T PRK11248 13 GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGF-----------VPYQHGSITLDGKPVEGPGAERGVVFQNEGL 81 (255)
T ss_pred CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEECCCCCCcEEEEeCCCcc
Confidence 3568888875 456999999999999999999999 7899999999997753221 24666664 4
Q ss_pred cccchHhhHhhhhccccC-CC-----C--------CC---CCCceeEecC------------CCCCchhHHHHHHHHHhh
Q 017295 87 PAFLEIHDIAGLVRGAHE-GQ-----G--------AF---EDPDIIHVDD------------SVDPVRDLEVISAELRLK 137 (374)
Q Consensus 87 ~~~~~v~D~~gl~~~~~~-~~-----~--------~~---~~~~il~l~~------------~~dP~~~l~ilde~l~~~ 137 (374)
+...++.+++.+...... .. . .+ .+..+..+++ +.+| +++++|||++++
T Consensus 82 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p--~lllLDEPt~~L 159 (255)
T PRK11248 82 LPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANP--QLLLLDEPFGAL 159 (255)
T ss_pred CCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCC--CEEEEeCCCccC
Confidence 555677777654321100 00 0 00 1111222222 5689 999999999999
Q ss_pred cHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHh--CCCceeccC
Q 017295 138 DIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQ--DGKDVRLGD 185 (374)
Q Consensus 138 D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~--~G~iv~~~~ 185 (374)
|+.....+++.+.+..++ +.+ |+...+..+||++ .+|+ +|+++...+
T Consensus 160 D~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i-~~l~~~~G~i~~~~~ 214 (255)
T PRK11248 160 DAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATEL-VLLSPGPGRVVERLP 214 (255)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE-EEEeCCCcEEEEEec
Confidence 999999999999887543 444 9999999999999 8887 488775543
No 136
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.65 E-value=2.5e-17 Score=153.66 Aligned_cols=157 Identities=15% Similarity=0.205 Sum_probs=113.6
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh--------------
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-------------- 76 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l-------------- 76 (374)
+.+|+++++ |..+||+|+||||||||+++|+|. ..|++|.|.++|.++..+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~ 81 (252)
T TIGR03005 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTL-----------EPIDEGQIQVEGEQLYHMPGRNGPLVPADEKH 81 (252)
T ss_pred eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEEccccccccccccccchhH
Confidence 468888886 456999999999999999999999 789999999999765321
Q ss_pred ----h--hhccCCCC-ccccchHhhHhhhhccccCCCC---------------C---CCCCceeEecC------------
Q 017295 77 ----C--QLFKPKSA-VPAFLEIHDIAGLVRGAHEGQG---------------A---FEDPDIIHVDD------------ 119 (374)
Q Consensus 77 ----~--~~~~~~~~-~~~~~~v~D~~gl~~~~~~~~~---------------~---~~~~~il~l~~------------ 119 (374)
. ..|.+|.. +++..++.|++.+......+.. . +.+.....+++
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral 161 (252)
T TIGR03005 82 LRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARAL 161 (252)
T ss_pred HHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHH
Confidence 1 13566664 4555677777655311000000 0 01111112222
Q ss_pred CCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 120 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 120 ~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+.+| +++++|||+.++|........+.+.+..++ +.+ |++..+..+||++ .+|++|+++..++
T Consensus 162 ~~~p--~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i-~~l~~G~i~~~g~ 230 (252)
T TIGR03005 162 AMRP--KVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRV-CFFDKGRIVEQGK 230 (252)
T ss_pred HcCC--CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEE-EEEECCEEEEeCC
Confidence 5688 999999999999999999999999887654 444 9999999999999 8999999876554
No 137
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.65 E-value=4e-17 Score=147.79 Aligned_cols=151 Identities=21% Similarity=0.184 Sum_probs=114.5
Q ss_pred ccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhh-----------h
Q 017295 15 RPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-----------L 79 (374)
Q Consensus 15 ~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~-----------~ 79 (374)
..+|+++++. ..++|+||+|||||||||+|.|+ ..|++|.+.++|.++..+.. +
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~l-----------d~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iG 86 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGL-----------DKPTSGEVLINGKDLTKLSEKELAKLRRKKIG 86 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------cCCCCceEEECCEEcCcCCHHHHHHHHHHhEE
Confidence 5789988864 45999999999999999999999 78999999999977654332 5
Q ss_pred ccCCCC-ccccchHhhHhhhhc---cccCCCC-----------C---CCC-CceeEecC------------CCCCchhHH
Q 017295 80 FKPKSA-VPAFLEIHDIAGLVR---GAHEGQG-----------A---FED-PDIIHVDD------------SVDPVRDLE 128 (374)
Q Consensus 80 ~~~~~~-~~~~~~v~D~~gl~~---~~~~~~~-----------~---~~~-~~il~l~~------------~~dP~~~l~ 128 (374)
|..|.. +.+.+++.|++.+.. +...+.. . ... ...-.+++ +.+| .++
T Consensus 87 fvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P--~ii 164 (226)
T COG1136 87 FVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNP--KII 164 (226)
T ss_pred EECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCC--CeE
Confidence 777876 777899999988632 2111100 1 111 22334454 6789 999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCc
Q 017295 129 VISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKD 180 (374)
Q Consensus 129 ilde~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~i 180 (374)
+.|||+..+|.++-+.+++.+.+..++ +.+ |+...+ ..|||+ ..|++|++
T Consensus 165 lADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA-~~~dr~-i~l~dG~~ 220 (226)
T COG1136 165 LADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELA-KYADRV-IELKDGKI 220 (226)
T ss_pred EeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH-HhCCEE-EEEeCCee
Confidence 999999999999999999999998866 433 988654 478998 78888873
No 138
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.65 E-value=3.6e-17 Score=153.84 Aligned_cols=159 Identities=17% Similarity=0.253 Sum_probs=115.8
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-------hhccC
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKP 82 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-------~~~~~ 82 (374)
++.+|+++++. ..++|+|+||||||||+++|+|. .+|+.|.|.++|.++.... ..|.+
T Consensus 19 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 87 (265)
T PRK10253 19 KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRL-----------MTPAHGHVWLDGEHIQHYASKEVARRIGLLA 87 (265)
T ss_pred CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCC-----------CCCCCcEEEECCEEhhhCCHHHHhhheEEee
Confidence 35689888864 55999999999999999999999 7899999999998653211 24667
Q ss_pred CCC-ccccchHhhHhhhhccccC------CC----C-----------CCCCCceeEecC------------CCCCchhHH
Q 017295 83 KSA-VPAFLEIHDIAGLVRGAHE------GQ----G-----------AFEDPDIIHVDD------------SVDPVRDLE 128 (374)
Q Consensus 83 ~~~-~~~~~~v~D~~gl~~~~~~------~~----~-----------~~~~~~il~l~~------------~~dP~~~l~ 128 (374)
|.. ++..+++.|++.+...... .. . .+.+..+..+++ +.+| +++
T Consensus 88 q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p--~ll 165 (265)
T PRK10253 88 QNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQET--AIM 165 (265)
T ss_pred ccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCC--CEE
Confidence 665 4445677777654211000 00 0 111122222332 5689 999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 129 VISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 129 ilde~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
++|||+.++|+.......+.+.++.++ +.+ |++..+..+||++ .+|++|+++..++.
T Consensus 166 llDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i-~~l~~G~i~~~g~~ 228 (265)
T PRK10253 166 LLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHL-IALREGKIVAQGAP 228 (265)
T ss_pred EEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEeCCH
Confidence 999999999999999999999887653 443 9999999999999 89999998866543
No 139
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.65 E-value=5.2e-17 Score=147.76 Aligned_cols=149 Identities=17% Similarity=0.187 Sum_probs=108.7
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-----hhccCCCC-ccccchHhhH
Q 017295 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKSA-VPAFLEIHDI 95 (374)
Q Consensus 22 ~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-----~~~~~~~~-~~~~~~v~D~ 95 (374)
..|..++|+|+||||||||+++|+|. .+|++|.|.++|.++.... ..|.+|.. ++..+++.|+
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en 90 (213)
T TIGR01277 22 ADGEIVAIMGPSGAGKSTLLNLIAGF-----------IEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQN 90 (213)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHH
Confidence 35667999999999999999999999 8899999999997653211 24667765 5556788888
Q ss_pred hhhhccccCC-C-----C-----------CCCCCceeEecC------------CCCCchhHHHHHHHHHhhcHHHHHHHH
Q 017295 96 AGLVRGAHEG-Q-----G-----------AFEDPDIIHVDD------------SVDPVRDLEVISAELRLKDIEFMERRI 146 (374)
Q Consensus 96 ~gl~~~~~~~-~-----~-----------~~~~~~il~l~~------------~~dP~~~l~ilde~l~~~D~~~~~~~~ 146 (374)
+.+....... . . ...+..+-.+++ +.+| +++++|||+.++|........
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p--~llllDEPt~~LD~~~~~~~~ 168 (213)
T TIGR01277 91 IGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPN--PILLLDEPFSALDPLLREEML 168 (213)
T ss_pred HHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCC--CEEEEcCCCccCCHHHHHHHH
Confidence 7653111000 0 0 001111122222 5688 999999999999999999999
Q ss_pred HHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceecc
Q 017295 147 EDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLG 184 (374)
Q Consensus 147 ~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~ 184 (374)
+.+.+..++ +.+ |+...+..+||++ .+|++|+++..+
T Consensus 169 ~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v-~~l~~g~i~~~~ 211 (213)
T TIGR01277 169 ALVKQLCSERQRTLLMVTHHLSDARAIASQI-AVVSQGKIKVVS 211 (213)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHhhcCeE-EEEECCeEEEec
Confidence 999887654 444 9999988999999 888999887654
No 140
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.65 E-value=1.9e-17 Score=145.90 Aligned_cols=144 Identities=20% Similarity=0.266 Sum_probs=105.3
Q ss_pred ccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh------hhhccCCC
Q 017295 15 RPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------CQLFKPKS 84 (374)
Q Consensus 15 ~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l------~~~~~~~~ 84 (374)
+.+|+++++. ..++|+|+||||||||+++|+|. ..|++|.|.++|.++... ...|.+|.
T Consensus 13 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~ 81 (173)
T cd03230 13 KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGL-----------LKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEE 81 (173)
T ss_pred eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeEEEECCEEcccchHhhhccEEEEecC
Confidence 3588888764 55999999999999999999999 779999999999765421 11466666
Q ss_pred C-ccccchHhhHhhhhccccCCCCCCCCCceeEecCCCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----
Q 017295 85 A-VPAFLEIHDIAGLVRGAHEGQGAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND----- 158 (374)
Q Consensus 85 ~-~~~~~~v~D~~gl~~~~~~~~~~~~~~~il~l~~~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~----- 158 (374)
. ++..+++.|++.+ |.|+. ....+...-+.+| +++++|||+.++|........+.+.+..+++.+
T Consensus 82 ~~~~~~~tv~~~~~L----S~G~~---qrv~laral~~~p--~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~t 152 (173)
T cd03230 82 PSLYENLTVRENLKL----SGGMK---QRLALAQALLHDP--ELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSS 152 (173)
T ss_pred CccccCCcHHHHhhc----CHHHH---HHHHHHHHHHcCC--CEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEC
Confidence 4 4555678887642 22221 0000000013468 999999999999999999999999988766443
Q ss_pred cchHHHHHHHHHHHHHHhCCC
Q 017295 159 KQLKIEHELCQRVKAWLQDGK 179 (374)
Q Consensus 159 H~~~~~~~~~d~v~~~L~~G~ 179 (374)
|+...+..+||++ .+|++|+
T Consensus 153 h~~~~~~~~~d~i-~~l~~g~ 172 (173)
T cd03230 153 HILEEAERLCDRV-AILNNGR 172 (173)
T ss_pred CCHHHHHHhCCEE-EEEeCCC
Confidence 9999888889988 7777665
No 141
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=3.7e-17 Score=150.68 Aligned_cols=151 Identities=13% Similarity=0.133 Sum_probs=110.5
Q ss_pred ccCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh-----hhhccCCCC-ccccchHhh
Q 017295 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQLFKPKSA-VPAFLEIHD 94 (374)
Q Consensus 21 i~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l-----~~~~~~~~~-~~~~~~v~D 94 (374)
+..|..+||+|+||||||||+++|+|. ..|++|.|.++|.++... ...|.+|.. +++.+++.+
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 90 (232)
T PRK10771 22 VERGERVAILGPSGAGKSTLLNLIAGF-----------LTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQ 90 (232)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHH
Confidence 345677999999999999999999999 789999999999875432 124666664 555578888
Q ss_pred HhhhhccccCC-CC----------------CCCCCceeEecC------------CCCCchhHHHHHHHHHhhcHHHHHHH
Q 017295 95 IAGLVRGAHEG-QG----------------AFEDPDIIHVDD------------SVDPVRDLEVISAELRLKDIEFMERR 145 (374)
Q Consensus 95 ~~gl~~~~~~~-~~----------------~~~~~~il~l~~------------~~dP~~~l~ilde~l~~~D~~~~~~~ 145 (374)
++.+....... .. .+.+..+..+++ +.+| +++++|||+.++|.......
T Consensus 91 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p--~lllLDEP~~gLD~~~~~~~ 168 (232)
T PRK10771 91 NIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQ--PILLLDEPFSALDPALRQEM 168 (232)
T ss_pred HHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCC--CEEEEeCCcccCCHHHHHHH
Confidence 77553211100 00 011122222332 5689 99999999999999999999
Q ss_pred HHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 146 IEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 146 ~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
.+.+.+..++ +.+ |+...+..+||++ .+|++|+++..++
T Consensus 169 ~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i-~~l~~g~i~~~g~ 213 (232)
T PRK10771 169 LTLVSQVCQERQLTLLMVSHSLEDAARIAPRS-LVVADGRIAWDGP 213 (232)
T ss_pred HHHHHHHHHhcCCEEEEEECCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 9999887654 444 9999999999999 8999999886654
No 142
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.64 E-value=3.2e-17 Score=154.38 Aligned_cols=157 Identities=16% Similarity=0.191 Sum_probs=110.5
Q ss_pred ccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhh-----hh--hhccCC
Q 017295 15 RPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LC--QLFKPK 83 (374)
Q Consensus 15 ~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~-----l~--~~~~~~ 83 (374)
+.+|+++++. ..++|+|+||||||||+++|+|. ++|++|.|.++|.++.. .. ..|.+|
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q 94 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGM-----------IEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQ 94 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCC-----------CCCCCCEEEECCEECCCCchhhHhccEEEEec
Confidence 5689998865 45999999999999999999999 88999999999876532 11 135565
Q ss_pred CC---ccccchHhhHhhhhccccCCCC---------------CC----CCCceeEecC------------CCCCchhHHH
Q 017295 84 SA---VPAFLEIHDIAGLVRGAHEGQG---------------AF----EDPDIIHVDD------------SVDPVRDLEV 129 (374)
Q Consensus 84 ~~---~~~~~~v~D~~gl~~~~~~~~~---------------~~----~~~~il~l~~------------~~dP~~~l~i 129 (374)
.. +++.+++.++..+......+.. .+ .+..+-.+++ +.+| ++++
T Consensus 95 ~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p--~lll 172 (267)
T PRK15112 95 DPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRP--KVII 172 (267)
T ss_pred CchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCC--CEEE
Confidence 53 2334455554432111000000 11 0111122322 5689 9999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 130 ISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 130 lde~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+|||++++|+.....+.+.+.++.++ +.+ |++..+..+||++ .+|++|+++..++
T Consensus 173 LDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i-~~l~~G~i~~~~~ 233 (267)
T PRK15112 173 ADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQV-LVMHQGEVVERGS 233 (267)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEE-EEEECCEEEecCC
Confidence 99999999999999999999887654 444 9999999999999 8899999876543
No 143
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.64 E-value=4.2e-17 Score=151.19 Aligned_cols=157 Identities=17% Similarity=0.139 Sum_probs=115.3
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh--------hhhcc
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------CQLFK 81 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l--------~~~~~ 81 (374)
++.+|+++++. ..+||+|+||||||||+++|+|. .+|++|.|.++|.++... ...|.
T Consensus 14 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 82 (242)
T TIGR03411 14 GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGK-----------TRPDEGSVLFGGTDLTGLPEHQIARAGIGRK 82 (242)
T ss_pred CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCeEEECCeecCCCCHHHHHhcCeeEe
Confidence 34688888864 56999999999999999999999 789999999999765321 12466
Q ss_pred CCCC-ccccchHhhHhhhhccccC--------CC---C-----------CC---CCCceeEecC------------CCCC
Q 017295 82 PKSA-VPAFLEIHDIAGLVRGAHE--------GQ---G-----------AF---EDPDIIHVDD------------SVDP 123 (374)
Q Consensus 82 ~~~~-~~~~~~v~D~~gl~~~~~~--------~~---~-----------~~---~~~~il~l~~------------~~dP 123 (374)
+|.. +++.+++.|++.+...... .. . .+ .+..+..+++ +.+|
T Consensus 83 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p 162 (242)
T TIGR03411 83 FQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDP 162 (242)
T ss_pred ccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 7765 5666788887765321100 00 0 01 1111222222 5688
Q ss_pred chhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 124 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 124 ~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+++++|||++++|+......++.+.++.+ +.+ |++..+..+||++ .+|++|+++..++
T Consensus 163 --~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i-~~l~~g~~~~~~~ 225 (242)
T TIGR03411 163 --KLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDMEFVRSIADKV-TVLHQGSVLAEGS 225 (242)
T ss_pred --CEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEE-EEEECCeEEeeCC
Confidence 99999999999999999999999988764 444 9999999999999 8999999886654
No 144
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.64 E-value=3.4e-17 Score=151.38 Aligned_cols=155 Identities=15% Similarity=0.096 Sum_probs=110.0
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh------hhhccC-
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------CQLFKP- 82 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l------~~~~~~- 82 (374)
.+.+|+++++ |..++|+|+||||||||+++|+|. .+|++|.|.++|.++... ...|.+
T Consensus 33 ~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~ 101 (236)
T cd03267 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGL-----------LQPTSGEVRVAGLVPWKRRKKFLRRIGVVFG 101 (236)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------cCCCceEEEECCEEccccchhhcccEEEEcC
Confidence 4578998876 456999999999999999999999 789999999998754221 113444
Q ss_pred CC-CccccchHhhHhhhhccccCC-CC-------------CC---CCCceeEecC------------CCCCchhHHHHHH
Q 017295 83 KS-AVPAFLEIHDIAGLVRGAHEG-QG-------------AF---EDPDIIHVDD------------SVDPVRDLEVISA 132 (374)
Q Consensus 83 ~~-~~~~~~~v~D~~gl~~~~~~~-~~-------------~~---~~~~il~l~~------------~~dP~~~l~ilde 132 (374)
+. .++..+++.|+..+....+.. .. .+ .+..+-.+++ +.+| +++++||
T Consensus 102 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p--~llllDE 179 (236)
T cd03267 102 QKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEP--EILFLDE 179 (236)
T ss_pred CccccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCC--CEEEEcC
Confidence 33 245556777766543221100 00 00 1111222222 5689 9999999
Q ss_pred HHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCcee
Q 017295 133 ELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVR 182 (374)
Q Consensus 133 ~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~ 182 (374)
|++++|+.....+.+.+.+..++ +.+ |+...+..+||++ .+|.+|+++.
T Consensus 180 Pt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i-~~l~~G~i~~ 234 (236)
T cd03267 180 PTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRV-LVIDKGRLLY 234 (236)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEE-EEEeCCEEEe
Confidence 99999999999999999887654 443 9999999999999 8888888754
No 145
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.64 E-value=3.7e-17 Score=159.95 Aligned_cols=150 Identities=16% Similarity=0.106 Sum_probs=112.0
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh---------h--hhccCCCC-cccc
Q 017295 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL---------C--QLFKPKSA-VPAF 89 (374)
Q Consensus 22 ~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l---------~--~~~~~~~~-~~~~ 89 (374)
..|..++|+|+||||||||+++|+|. .+|++|.|.++|.++... . ..|.+|.. +++.
T Consensus 21 ~~Gei~~l~G~nGsGKSTLl~~iaGl-----------~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 89 (354)
T TIGR02142 21 PGQGVTAIFGRSGSGKTTLIRLIAGL-----------TRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPH 89 (354)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCC
Confidence 34567999999999999999999999 889999999999775321 1 14667765 5667
Q ss_pred chHhhHhhhhccccCCCC---------------CCCCCceeEecC------------CCCCchhHHHHHHHHHhhcHHHH
Q 017295 90 LEIHDIAGLVRGAHEGQG---------------AFEDPDIIHVDD------------SVDPVRDLEVISAELRLKDIEFM 142 (374)
Q Consensus 90 ~~v~D~~gl~~~~~~~~~---------------~~~~~~il~l~~------------~~dP~~~l~ilde~l~~~D~~~~ 142 (374)
+++.+++.+......... .+.+..+-.+++ +.+| +++++|||++++|....
T Consensus 90 ~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p--~lllLDEPts~LD~~~~ 167 (354)
T TIGR02142 90 LSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSP--RLLLMDEPLAALDDPRK 167 (354)
T ss_pred CcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCC--CEEEEcCCCcCCCHHHH
Confidence 888888876422111000 111122222333 5689 99999999999999999
Q ss_pred HHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 143 ERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 143 ~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
..+++.+.++.++ +.+ |++.++..+||++ .+|++|+++..++
T Consensus 168 ~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i-~~l~~G~i~~~g~ 215 (354)
T TIGR02142 168 YEILPYLERLHAEFGIPILYVSHSLQEVLRLADRV-VVLEDGRVAAAGP 215 (354)
T ss_pred HHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEE-EEEeCCEEEEECC
Confidence 9999999887754 443 9999999999999 9999999987654
No 146
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.64 E-value=3.3e-17 Score=160.15 Aligned_cols=150 Identities=16% Similarity=0.152 Sum_probs=112.1
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh-----------hhhccCCCC-cccc
Q 017295 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----------CQLFKPKSA-VPAF 89 (374)
Q Consensus 22 ~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l-----------~~~~~~~~~-~~~~ 89 (374)
..|..++|+|+||||||||+++|+|. .+|++|.|.++|.++... ...|.+|.. +++.
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl~~iaGl-----------~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 90 (352)
T PRK11144 22 PAQGITAIFGRSGAGKTSLINAISGL-----------TRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPH 90 (352)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCC
Confidence 34667999999999999999999999 889999999999765321 114667775 6667
Q ss_pred chHhhHhhhhccccCCCC-----------CCCCCceeEecC------------CCCCchhHHHHHHHHHhhcHHHHHHHH
Q 017295 90 LEIHDIAGLVRGAHEGQG-----------AFEDPDIIHVDD------------SVDPVRDLEVISAELRLKDIEFMERRI 146 (374)
Q Consensus 90 ~~v~D~~gl~~~~~~~~~-----------~~~~~~il~l~~------------~~dP~~~l~ilde~l~~~D~~~~~~~~ 146 (374)
+++.|++.+......... .+.+..+-.+++ +.+| +++++|||++++|......++
T Consensus 91 ~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p--~llLLDEPts~LD~~~~~~l~ 168 (352)
T PRK11144 91 YKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAP--ELLLMDEPLASLDLPRKRELL 168 (352)
T ss_pred CcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCC--CEEEEcCCcccCCHHHHHHHH
Confidence 888888765321100000 111222223333 5689 999999999999999999999
Q ss_pred HHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 147 EDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 147 ~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+.+.++.++ +.+ |+..++..+||++ .+|++|+++..++
T Consensus 169 ~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i-~~l~~G~i~~~g~ 212 (352)
T PRK11144 169 PYLERLAREINIPILYVSHSLDEILRLADRV-VVLEQGKVKAFGP 212 (352)
T ss_pred HHHHHHHHhcCCeEEEEecCHHHHHHhCCEE-EEEeCCEEEEecC
Confidence 999887755 443 9999999999999 9999999987654
No 147
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=2.2e-17 Score=156.41 Aligned_cols=157 Identities=15% Similarity=0.130 Sum_probs=115.6
Q ss_pred ccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-------hhccCC
Q 017295 15 RPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPK 83 (374)
Q Consensus 15 ~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-------~~~~~~ 83 (374)
+.+|+++++. ..+||+|+||||||||+++|+|. ++|++|.|.++|.++.... ..|.+|
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q 88 (279)
T PRK13650 20 KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGL-----------LEAESGQIIIDGDLLTEENVWDIRHKIGMVFQ 88 (279)
T ss_pred CeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECCEECCcCcHHHHHhhceEEEc
Confidence 4589888865 45999999999999999999999 8899999999998764311 146666
Q ss_pred CC--ccccchHhhHhhhhccccC-CC-----C-----------CCCCCceeEecC------------CCCCchhHHHHHH
Q 017295 84 SA--VPAFLEIHDIAGLVRGAHE-GQ-----G-----------AFEDPDIIHVDD------------SVDPVRDLEVISA 132 (374)
Q Consensus 84 ~~--~~~~~~v~D~~gl~~~~~~-~~-----~-----------~~~~~~il~l~~------------~~dP~~~l~ilde 132 (374)
.. .....++.|++.+...... .. . .+.+..+..+++ +.+| +++++||
T Consensus 89 ~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p--~lLlLDE 166 (279)
T PRK13650 89 NPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRP--KIIILDE 166 (279)
T ss_pred ChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCC--CEEEEEC
Confidence 53 3344678887765421110 00 0 112222333333 6789 9999999
Q ss_pred HHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 133 ELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 133 ~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
|+.++|+.....+++.+.++.++ +.+ |++..+ ..||++ .+|++|+++..++.
T Consensus 167 Pt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~-~~~dri-~~l~~G~i~~~g~~ 224 (279)
T PRK13650 167 ATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEV-ALSDRV-LVMKNGQVESTSTP 224 (279)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEE-EEEECCEEEEECCH
Confidence 99999999999999999888754 544 999887 579999 89999998876653
No 148
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.64 E-value=3.1e-17 Score=149.93 Aligned_cols=152 Identities=16% Similarity=0.119 Sum_probs=108.6
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh-----------hhh
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----------CQL 79 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l-----------~~~ 79 (374)
+.+|+++++ |..++|+|+||||||||+++|+|. .+|++|.|.++|.++... ...
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 86 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGL-----------DNPTSGEVLFNGQSLSKLSSNERAKLRNKKLG 86 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEEhhhcCHhHHHHHHHhcEE
Confidence 468988876 455999999999999999999999 789999999999765321 124
Q ss_pred ccCCCC-ccccchHhhHhhhhccccC-C-C----C--------CC---CCCceeEecC------------CCCCchhHHH
Q 017295 80 FKPKSA-VPAFLEIHDIAGLVRGAHE-G-Q----G--------AF---EDPDIIHVDD------------SVDPVRDLEV 129 (374)
Q Consensus 80 ~~~~~~-~~~~~~v~D~~gl~~~~~~-~-~----~--------~~---~~~~il~l~~------------~~dP~~~l~i 129 (374)
|.+|.. ++..+++.|+..+...... . . . .+ .+..+-.+++ +.+| ++++
T Consensus 87 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p--~ill 164 (221)
T TIGR02211 87 FIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQP--SLVL 164 (221)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCC--CEEE
Confidence 667765 5556788887765321100 0 0 0 01 1111222222 5689 9999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCce
Q 017295 130 ISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDV 181 (374)
Q Consensus 130 lde~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv 181 (374)
+|||++++|........+.+.++.++ +.+ |++..+.. +|++ .+|++|+++
T Consensus 165 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v-~~l~~G~i~ 220 (221)
T TIGR02211 165 ADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK-LDRV-LEMKDGQLF 220 (221)
T ss_pred EeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEE-EEEeCCEec
Confidence 99999999999999999999887643 443 99987754 7888 788888764
No 149
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.64 E-value=8.2e-17 Score=142.39 Aligned_cols=157 Identities=18% Similarity=0.225 Sum_probs=120.6
Q ss_pred ccccccccccCCce----EEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhh---------h
Q 017295 13 AERPILGRFSSHLK----IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ---------L 79 (374)
Q Consensus 13 ~~~~vL~~i~~~~~----vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~---------~ 79 (374)
.++++|++++..+. |.+||.||||||||+|+|+|. +.|++|.|.++|.++...+. .
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~-----------l~~t~G~I~Idg~dVtk~~~~~RA~~larV 85 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGD-----------LKPTSGQILIDGVDVTKKSVAKRANLLARV 85 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCc-----------cccCCceEEECceecccCCHHHHhhHHHHH
Confidence 46789999887654 999999999999999999999 89999999999998876443 3
Q ss_pred ccCC-CCccccchHhhHhhhhccccCCCC----------------------CC---CCCceeEecC------------CC
Q 017295 80 FKPK-SAVPAFLEIHDIAGLVRGAHEGQG----------------------AF---EDPDIIHVDD------------SV 121 (374)
Q Consensus 80 ~~~~-~~~~~~~~v~D~~gl~~~~~~~~~----------------------~~---~~~~il~l~~------------~~ 121 (374)
|+.. .-..+.+++.++..+.....+..+ .+ ..+.+-.+++ ..
T Consensus 86 fQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~ 165 (263)
T COG1101 86 FQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLH 165 (263)
T ss_pred hcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcC
Confidence 3322 235677899999888643222111 11 1223333333 45
Q ss_pred CCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccC------ccchHHHHHHHHHHHHHHhCCCceec
Q 017295 122 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSN------DKQLKIEHELCQRVKAWLQDGKDVRL 183 (374)
Q Consensus 122 dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~------~H~~~~~~~~~d~v~~~L~~G~iv~~ 183 (374)
.| +++++||-++.+||...+..++...+..++.+ ||+++.+..+-+|. ++|++|+|+-+
T Consensus 166 ~p--kiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~Rl-ImLh~G~IvlD 230 (263)
T COG1101 166 PP--KILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRL-IMLHSGKIVLD 230 (263)
T ss_pred CC--cEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeE-EEEeCCeEEEE
Confidence 67 99999999999999999999998887776543 29999999999999 99999999864
No 150
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.64 E-value=4.6e-17 Score=166.50 Aligned_cols=160 Identities=14% Similarity=0.088 Sum_probs=118.6
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh------h--hhcc
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------C--QLFK 81 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l------~--~~~~ 81 (374)
++.+|+++++ |..+||+|+||||||||+++|+|. +.|++|.|.++|.++... . ..|.
T Consensus 16 ~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 84 (501)
T PRK10762 16 GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGI-----------YTRDAGSILYLGKEVTFNGPKSSQEAGIGII 84 (501)
T ss_pred CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEECCCCCHHHHHhCCEEEE
Confidence 4568998886 456999999999999999999999 789999999999765321 1 2466
Q ss_pred CCCC-ccccchHhhHhhhhcccc---CCC-------C-----------CCCCCceeEecC------------CCCCchhH
Q 017295 82 PKSA-VPAFLEIHDIAGLVRGAH---EGQ-------G-----------AFEDPDIIHVDD------------SVDPVRDL 127 (374)
Q Consensus 82 ~~~~-~~~~~~v~D~~gl~~~~~---~~~-------~-----------~~~~~~il~l~~------------~~dP~~~l 127 (374)
+|.. ++..+++.|++.+..... ... . ...+..+-.+++ +.+| ++
T Consensus 85 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p--~l 162 (501)
T PRK10762 85 HQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFES--KV 162 (501)
T ss_pred EcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCC--CE
Confidence 7764 555678888776532110 000 0 111122223333 5789 99
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCCC
Q 017295 128 EVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 187 (374)
Q Consensus 128 ~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~~ 187 (374)
+++|||++++|+.....+++.+.++.+.+.+ |+++.+..+||++ .+|++|+++..++..
T Consensus 163 llLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i-~~l~~G~i~~~~~~~ 226 (501)
T PRK10762 163 IIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDV-TVFRDGQFIAEREVA 226 (501)
T ss_pred EEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEE-EEEeCCEEEEecCcC
Confidence 9999999999999999999999887655544 9999999999999 999999998765543
No 151
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=2.3e-17 Score=158.08 Aligned_cols=157 Identities=18% Similarity=0.145 Sum_probs=114.7
Q ss_pred ccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchh----------------
Q 017295 15 RPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE---------------- 74 (374)
Q Consensus 15 ~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~---------------- 74 (374)
..+|+++++. ..++|+|+||||||||+++|+|. .+|++|.|.++|.+..
T Consensus 20 ~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 88 (305)
T PRK13651 20 LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNAL-----------LLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLV 88 (305)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCCcEEEEeceecccccccccccccccccc
Confidence 3689998865 46999999999999999999999 8899999999865431
Q ss_pred -------------hhh--hhccCCCC--ccccchHhhHhhhhccccCCCC---------------CC----CCCceeEec
Q 017295 75 -------------WLC--QLFKPKSA--VPAFLEIHDIAGLVRGAHEGQG---------------AF----EDPDIIHVD 118 (374)
Q Consensus 75 -------------~l~--~~~~~~~~--~~~~~~v~D~~gl~~~~~~~~~---------------~~----~~~~il~l~ 118 (374)
... ..|.+|.. .....++.|++.+..... +.. .+ .+..+..++
T Consensus 89 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LS 167 (305)
T PRK13651 89 IQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM-GVSKEEAKKRAAKYIELVGLDESYLQRSPFELS 167 (305)
T ss_pred cccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc-CCCHHHHHHHHHHHHHHcCCChhhhhCChhhCC
Confidence 111 14666652 222357777776543211 100 11 122223333
Q ss_pred C------------CCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCce
Q 017295 119 D------------SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDV 181 (374)
Q Consensus 119 ~------------~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv 181 (374)
+ +.+| +++++|||++++|+.....+++.+.++.+.+.+ |++..+..+||++ .+|++|+++
T Consensus 168 gGqkqrvalA~aL~~~P--~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv-~vl~~G~i~ 244 (305)
T PRK13651 168 GGQKRRVALAGILAMEP--DFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRT-IFFKDGKII 244 (305)
T ss_pred HHHHHHHHHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEE-EEEECCEEE
Confidence 3 5789 999999999999999999999999887755554 9999999999999 999999998
Q ss_pred eccCC
Q 017295 182 RLGDW 186 (374)
Q Consensus 182 ~~~~~ 186 (374)
..++.
T Consensus 245 ~~g~~ 249 (305)
T PRK13651 245 KDGDT 249 (305)
T ss_pred EECCH
Confidence 77653
No 152
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=3.1e-17 Score=155.50 Aligned_cols=157 Identities=14% Similarity=0.059 Sum_probs=113.4
Q ss_pred ccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh---------h--hh
Q 017295 15 RPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL---------C--QL 79 (374)
Q Consensus 15 ~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l---------~--~~ 79 (374)
+.+|+++++. ..++|+|+||||||||+++|+|. ..|++|.|.++|.++... . ..
T Consensus 20 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl-----------~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~ 88 (280)
T PRK13649 20 GRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGL-----------HVPTQGSVRVDDTLITSTSKNKDIKQIRKKVG 88 (280)
T ss_pred cceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEEccccccccCHHHHHhheE
Confidence 4689988864 46999999999999999999999 789999999999765321 1 14
Q ss_pred ccCCCC--ccccchHhhHhhhhccccC-CCC-------------CC----CCCceeEecC------------CCCCchhH
Q 017295 80 FKPKSA--VPAFLEIHDIAGLVRGAHE-GQG-------------AF----EDPDIIHVDD------------SVDPVRDL 127 (374)
Q Consensus 80 ~~~~~~--~~~~~~v~D~~gl~~~~~~-~~~-------------~~----~~~~il~l~~------------~~dP~~~l 127 (374)
|.+|.. .....++.|++.+...... ... .+ .+..+-.+++ +.+| ++
T Consensus 89 ~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p--~l 166 (280)
T PRK13649 89 LVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEP--KI 166 (280)
T ss_pred EEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCC--CE
Confidence 667663 1222477777654321110 000 11 1122223333 5789 99
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 128 EVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 128 ~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+++|||++++|+.....+.+.+.++.+.+.+ |+...+..+||++ .+|++|+++..++
T Consensus 167 llLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i-~~l~~G~i~~~g~ 228 (280)
T PRK13649 167 LVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFV-YVLEKGKLVLSGK 228 (280)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 9999999999999999999999887655444 9999999999999 8999999886654
No 153
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=3.9e-17 Score=150.66 Aligned_cols=156 Identities=15% Similarity=0.107 Sum_probs=112.0
Q ss_pred ccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh-----------hhh
Q 017295 15 RPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----------CQL 79 (374)
Q Consensus 15 ~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l-----------~~~ 79 (374)
+.+|+++++. ..++|+|+||||||||+++|+|. .+|++|.|.++|.++... ...
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~ 90 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGL-----------DTPTSGDVIFNGQPMSKLSSAAKAELRNQKLG 90 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCEEcCcCCHHHHHHHHhccEE
Confidence 4689988865 45999999999999999999999 789999999999775321 124
Q ss_pred ccCCCC-ccccchHhhHhhhhccccC-C--C---C--------CC---CCCceeEecC------------CCCCchhHHH
Q 017295 80 FKPKSA-VPAFLEIHDIAGLVRGAHE-G--Q---G--------AF---EDPDIIHVDD------------SVDPVRDLEV 129 (374)
Q Consensus 80 ~~~~~~-~~~~~~v~D~~gl~~~~~~-~--~---~--------~~---~~~~il~l~~------------~~dP~~~l~i 129 (374)
|.+|.. +++.+++.+++.+...... . . . .+ .+.....+++ +.+| ++++
T Consensus 91 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p--~lll 168 (233)
T PRK11629 91 FIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNP--RLVL 168 (233)
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCC--CEEE
Confidence 667775 5556788887765321100 0 0 0 11 1111122222 5689 9999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 130 ISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 130 lde~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+|||++++|........+.+.+..++ +.+ |+++.+..+ +++ .+|++|+++..+.
T Consensus 169 LDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~-~~~-~~l~~G~i~~~~~ 228 (233)
T PRK11629 169 ADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM-SRQ-LEMRDGRLTAELS 228 (233)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh-CEE-EEEECCEEEEEec
Confidence 99999999999999999999887643 444 999887765 577 7889998876554
No 154
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=3e-17 Score=152.28 Aligned_cols=157 Identities=17% Similarity=0.174 Sum_probs=112.8
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-------hhccC
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKP 82 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-------~~~~~ 82 (374)
++.+|+++++. ..++|+|+||||||||+++|+|. .+|++|.|.++|.++.... ..|.+
T Consensus 15 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~ 83 (241)
T PRK14250 15 GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRL-----------IDPTEGSILIDGVDIKTIDVIDLRRKIGMVF 83 (241)
T ss_pred CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEEhhhcChHHhhhcEEEEe
Confidence 34688888765 46999999999999999999999 7899999999997653211 14666
Q ss_pred CCC-ccccchHhhHhhhhccccCCC--C--------CC----CCCceeEecC------------CCCCchhHHHHHHHHH
Q 017295 83 KSA-VPAFLEIHDIAGLVRGAHEGQ--G--------AF----EDPDIIHVDD------------SVDPVRDLEVISAELR 135 (374)
Q Consensus 83 ~~~-~~~~~~v~D~~gl~~~~~~~~--~--------~~----~~~~il~l~~------------~~dP~~~l~ilde~l~ 135 (374)
|.. ++ ..++.++..+........ . .+ .+...-.+++ +.+| +++++|||++
T Consensus 84 q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p--~llllDEPt~ 160 (241)
T PRK14250 84 QQPHLF-EGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNP--EVLLLDEPTS 160 (241)
T ss_pred cCchhc-hhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCC--CEEEEeCCcc
Confidence 664 33 247777665422111000 0 11 1111222332 5689 9999999999
Q ss_pred hhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 136 LKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 136 ~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
++|........+.+....++ +.+ |+...+..+||++ .+|++|+++..++
T Consensus 161 ~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i-~~l~~G~i~~~~~ 215 (241)
T PRK14250 161 ALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYT-AFLNKGILVEYAK 215 (241)
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEE-EEEeCCEEEEeCC
Confidence 99999999999999887654 444 9999999999999 8999999876543
No 155
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=2.5e-17 Score=156.91 Aligned_cols=157 Identities=15% Similarity=0.123 Sum_probs=115.8
Q ss_pred ccccccccCCc----eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhh---------hh--hh
Q 017295 15 RPILGRFSSHL----KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW---------LC--QL 79 (374)
Q Consensus 15 ~~vL~~i~~~~----~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~---------l~--~~ 79 (374)
+.+|+++++.+ .++|+|+||||||||+++|+|. ..|++|.|.++|+++.. .. ..
T Consensus 20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig 88 (290)
T PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGL-----------LQPTSGTVTIGERVITAGKKNKKLKPLRKKVG 88 (290)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-----------CCCCCcEEEECCEECccccccchHHHHHhhEE
Confidence 46899998654 5999999999999999999999 78999999999987631 11 14
Q ss_pred ccCCCC--ccccchHhhHhhhhccccC---CC---C--------CC----CCCceeEecC------------CCCCchhH
Q 017295 80 FKPKSA--VPAFLEIHDIAGLVRGAHE---GQ---G--------AF----EDPDIIHVDD------------SVDPVRDL 127 (374)
Q Consensus 80 ~~~~~~--~~~~~~v~D~~gl~~~~~~---~~---~--------~~----~~~~il~l~~------------~~dP~~~l 127 (374)
|.+|.. .....++.+++.+...... .. . .+ .+..+..+++ +.+| ++
T Consensus 89 ~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P--~l 166 (290)
T PRK13634 89 IVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEP--EV 166 (290)
T ss_pred EEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCC--CE
Confidence 666653 1223577777765321110 00 0 11 1222333333 6789 99
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 128 EVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 128 ~ilde~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+++|||++++|+.....+++.+.++.++ +.+ |++..+..+||++ .+|++|+++..++
T Consensus 167 lllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv-~~l~~G~i~~~g~ 229 (290)
T PRK13634 167 LVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQI-VVMHKGTVFLQGT 229 (290)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 9999999999999999999999888654 444 9999999999999 9999999987664
No 156
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=3.4e-17 Score=154.49 Aligned_cols=158 Identities=17% Similarity=0.227 Sum_probs=112.0
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhh-------hh--hhc
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLF 80 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~-------l~--~~~ 80 (374)
++.+|+++++. ..++|+|+||||||||+++|+|. ++|++|.|.++|.++.. .. ..|
T Consensus 13 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~ 81 (271)
T PRK13638 13 DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGL-----------LRPQKGAVLWQGKPLDYSKRGLLALRQQVAT 81 (271)
T ss_pred CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCC-----------CCCCccEEEECCEEcccccCCHHHHHhheEE
Confidence 35689888764 56999999999999999999999 88999999999987531 11 146
Q ss_pred cCCCCc--cccchHhhHhhhhccccC-----------------CCCCCCCCceeEecC------------CCCCchhHHH
Q 017295 81 KPKSAV--PAFLEIHDIAGLVRGAHE-----------------GQGAFEDPDIIHVDD------------SVDPVRDLEV 129 (374)
Q Consensus 81 ~~~~~~--~~~~~v~D~~gl~~~~~~-----------------~~~~~~~~~il~l~~------------~~dP~~~l~i 129 (374)
.+|... ....++.+++.+...... +...+.+..+..+++ +.+| ++++
T Consensus 82 v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p--~lll 159 (271)
T PRK13638 82 VFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQA--RYLL 159 (271)
T ss_pred EeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCC--CEEE
Confidence 666531 222344554433211000 000111222233333 5689 9999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 130 ISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 130 lde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+|||++++|........+.+.++.+++.+ |++..+..+||++ .+|++|+++..++
T Consensus 160 LDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i-~~l~~G~i~~~g~ 219 (271)
T PRK13638 160 LDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAV-YVLRQGQILTHGA 219 (271)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 99999999999999999999887655544 9999999999999 8999999887654
No 157
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.64 E-value=6.2e-17 Score=149.24 Aligned_cols=157 Identities=12% Similarity=0.150 Sum_probs=114.8
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-----hhccCCC
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS 84 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-----~~~~~~~ 84 (374)
.+.+|+++++ |..+||+|+||||||||+++|+|. ++|+.|.|.++|.++.... ..|.+|+
T Consensus 12 ~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~-----------~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 80 (232)
T cd03300 12 GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGF-----------ETPTSGEILLDGKDITNLPPHKRPVNTVFQN 80 (232)
T ss_pred CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCEEcCcCChhhcceEEEecc
Confidence 3468888765 566999999999999999999999 8899999999998664321 2466666
Q ss_pred C-ccccchHhhHhhhhccccC-----------------CCCCCCCCceeEecC------------CCCCchhHHHHHHHH
Q 017295 85 A-VPAFLEIHDIAGLVRGAHE-----------------GQGAFEDPDIIHVDD------------SVDPVRDLEVISAEL 134 (374)
Q Consensus 85 ~-~~~~~~v~D~~gl~~~~~~-----------------~~~~~~~~~il~l~~------------~~dP~~~l~ilde~l 134 (374)
. ++..+++.|+..+...... +...+.+..+..++. +.+| ++.++|||+
T Consensus 81 ~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p--~llllDEP~ 158 (232)
T cd03300 81 YALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEP--KVLLLDEPL 158 (232)
T ss_pred cccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCC--CEEEEcCCc
Confidence 5 4445677777654321110 000111112222222 5688 999999999
Q ss_pred HhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceecc
Q 017295 135 RLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLG 184 (374)
Q Consensus 135 ~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~ 184 (374)
.++|......+++.+....++ +.+ |+...+..+||++ .+|++|+++..+
T Consensus 159 ~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i-~~l~~G~~~~~~ 213 (232)
T cd03300 159 GALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRI-AVMNKGKIQQIG 213 (232)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEE-EEEECCEEEecC
Confidence 999999999999999887654 444 9999999999999 889999987654
No 158
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.64 E-value=2.6e-17 Score=168.65 Aligned_cols=160 Identities=14% Similarity=0.153 Sum_probs=118.9
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh--------hhhcc
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------CQLFK 81 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l--------~~~~~ 81 (374)
++.+|+++++. ..+||+|+||||||||+++|+|. +.|++|.|.++|.++... ...|.
T Consensus 23 ~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 91 (510)
T PRK15439 23 GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGI-----------VPPDSGTLEIGGNPCARLTPAKAHQLGIYLV 91 (510)
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 45688988764 55999999999999999999999 889999999999765321 12466
Q ss_pred CCCC-ccccchHhhHhhhhccccCC--CC-----------CCCCCceeEecC------------CCCCchhHHHHHHHHH
Q 017295 82 PKSA-VPAFLEIHDIAGLVRGAHEG--QG-----------AFEDPDIIHVDD------------SVDPVRDLEVISAELR 135 (374)
Q Consensus 82 ~~~~-~~~~~~v~D~~gl~~~~~~~--~~-----------~~~~~~il~l~~------------~~dP~~~l~ilde~l~ 135 (374)
+|.. ++..+++.|++.+....... .. ...+..+-.+++ +.+| +++++|||++
T Consensus 92 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p--~lllLDEPt~ 169 (510)
T PRK15439 92 PQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDS--RILILDEPTA 169 (510)
T ss_pred eccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCC--CEEEEECCCC
Confidence 7765 55667888877653211000 00 111222223333 5689 9999999999
Q ss_pred hhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCCC
Q 017295 136 LKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 187 (374)
Q Consensus 136 ~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~~ 187 (374)
++|+.....+++.+.++.+++.+ |++..+..+||++ .+|++|+++..++.+
T Consensus 170 ~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i-~~l~~G~i~~~g~~~ 225 (510)
T PRK15439 170 SLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRI-SVMRDGTIALSGKTA 225 (510)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEecChH
Confidence 99999999999999888765544 9999999999999 999999998766543
No 159
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=2.8e-17 Score=156.30 Aligned_cols=157 Identities=13% Similarity=0.132 Sum_probs=115.5
Q ss_pred ccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhh---------hh--hh
Q 017295 15 RPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW---------LC--QL 79 (374)
Q Consensus 15 ~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~---------l~--~~ 79 (374)
+.+|+++++. ..+||+|+||||||||+++|+|. ..|+.|.|.++|.++.. .. ..
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl-----------~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig 88 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINAL-----------LKPTTGTVTVDDITITHKTKDKYIRPVRKRIG 88 (286)
T ss_pred cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECCEECccccccchHHHHHhheE
Confidence 4689998864 55999999999999999999999 88999999999987632 11 14
Q ss_pred ccCCCC--ccccchHhhHhhhhccccC-CC----C---------CC----CCCceeEecC------------CCCCchhH
Q 017295 80 FKPKSA--VPAFLEIHDIAGLVRGAHE-GQ----G---------AF----EDPDIIHVDD------------SVDPVRDL 127 (374)
Q Consensus 80 ~~~~~~--~~~~~~v~D~~gl~~~~~~-~~----~---------~~----~~~~il~l~~------------~~dP~~~l 127 (374)
|.+|.. .....++.|++.+...... .. . .+ .+..+-.+++ +.+| ++
T Consensus 89 ~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p--~i 166 (286)
T PRK13646 89 MVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNP--DI 166 (286)
T ss_pred EEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCC--CE
Confidence 666653 1222477777765421110 00 0 11 1122333333 5789 99
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 128 EVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 128 ~ilde~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+++|||++++|+.....+++.+.++.++ +.+ |+++.+..+||++ .+|++|+++..++
T Consensus 167 lllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri-~~l~~G~i~~~g~ 229 (286)
T PRK13646 167 IVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEV-IVMKEGSIVSQTS 229 (286)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 9999999999999999999999887654 444 9999999999999 9999999987664
No 160
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=5.1e-17 Score=147.89 Aligned_cols=144 Identities=14% Similarity=0.164 Sum_probs=105.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhh---------h--hhhccCCCC-ccccchH
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW---------L--CQLFKPKSA-VPAFLEI 92 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~---------l--~~~~~~~~~-~~~~~~v 92 (374)
..++|+|+||||||||+++|+|. ++|++|.|.++|.++.. . ...|.+|.. +++.+++
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 92 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGL-----------EKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNV 92 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCH
Confidence 57999999999999999999999 88999999999876531 1 124667765 5556778
Q ss_pred hhHhhhhccccCC----CC--------CC---CCCceeEecC------------CCCCchhHHHHHHHHHhhcHHHHHHH
Q 017295 93 HDIAGLVRGAHEG----QG--------AF---EDPDIIHVDD------------SVDPVRDLEVISAELRLKDIEFMERR 145 (374)
Q Consensus 93 ~D~~gl~~~~~~~----~~--------~~---~~~~il~l~~------------~~dP~~~l~ilde~l~~~D~~~~~~~ 145 (374)
.|+..+....... .. .+ .+..+..+++ +.+| +++++|||++++|.......
T Consensus 93 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p--~llllDEPt~~LD~~~~~~l 170 (214)
T cd03297 93 RENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQP--ELLLLDEPFSALDRALRLQL 170 (214)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCC--CEEEEcCCcccCCHHHHHHH
Confidence 7776543211000 00 11 1122233333 5789 99999999999999999999
Q ss_pred HHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCcee
Q 017295 146 IEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVR 182 (374)
Q Consensus 146 ~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~ 182 (374)
.+.+.+..++ +.+ |+...+..+||++ .+|++|+++.
T Consensus 171 ~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i-~~l~~G~i~~ 212 (214)
T cd03297 171 LPELKQIKKNLNIPVIFVTHDLSEAEYLADRI-VVMEDGRLQY 212 (214)
T ss_pred HHHHHHHHHHcCcEEEEEecCHHHHHHhcCEE-EEEECCEEEe
Confidence 9999887654 444 9999999999999 8899998764
No 161
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.63 E-value=6.7e-17 Score=146.97 Aligned_cols=150 Identities=21% Similarity=0.274 Sum_probs=107.2
Q ss_pred ccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh--hhccCCCC-cc
Q 017295 15 RPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC--QLFKPKSA-VP 87 (374)
Q Consensus 15 ~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~--~~~~~~~~-~~ 87 (374)
+.+|+++++. ..++|+|+||||||||+++|+|. .+|++|.|.++|.++.... ..|.+|.. ++
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-----------~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~ 80 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGL-----------LKPTSGSIRVFGKPLEKERKRIGYVPQRRSID 80 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCC-----------CCCCCCEEEECCccHHHHHhheEEeccccccc
Confidence 4688888764 46999999999999999999999 7899999999998764222 24666654 21
Q ss_pred --ccchHhhHhhhhccccCC----CC--------------CC---CCCceeEecC------------CCCCchhHHHHHH
Q 017295 88 --AFLEIHDIAGLVRGAHEG----QG--------------AF---EDPDIIHVDD------------SVDPVRDLEVISA 132 (374)
Q Consensus 88 --~~~~v~D~~gl~~~~~~~----~~--------------~~---~~~~il~l~~------------~~dP~~~l~ilde 132 (374)
...++.|++.+....... .. .+ .+..+..+++ +.+| +++++||
T Consensus 81 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p--~llllDE 158 (213)
T cd03235 81 RDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDP--DLLLLDE 158 (213)
T ss_pred cCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCC--CEEEEeC
Confidence 235777776553211000 00 01 1112222332 5689 9999999
Q ss_pred HHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCC
Q 017295 133 ELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDG 178 (374)
Q Consensus 133 ~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G 178 (374)
|++++|+.......+.+.+..+++.+ |+...+..+||++ .+|++|
T Consensus 159 Pt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i-~~l~~~ 208 (213)
T cd03235 159 PFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRV-LLLNRT 208 (213)
T ss_pred CcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEE-EEEcCc
Confidence 99999999999999999887655544 9999999999998 777665
No 162
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=2.8e-17 Score=155.71 Aligned_cols=156 Identities=16% Similarity=0.133 Sum_probs=114.4
Q ss_pred ccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-------hhccCC
Q 017295 15 RPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPK 83 (374)
Q Consensus 15 ~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-------~~~~~~ 83 (374)
+.+|+++++. ..+||+|+||||||||+++|+|. .+|++|.|.++|.++.... ..|.+|
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~-----------~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q 88 (279)
T PRK13635 20 TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGL-----------LLPEAGTITVGGMVLSEETVWDVRRQVGMVFQ 88 (279)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-----------CCCCCcEEEECCEECCcCcHHHHhhheEEEEe
Confidence 4689888864 45999999999999999999999 8899999999998764321 146666
Q ss_pred CC--ccccchHhhHhhhhccccC-C----------------CCCCCCCceeEecC------------CCCCchhHHHHHH
Q 017295 84 SA--VPAFLEIHDIAGLVRGAHE-G----------------QGAFEDPDIIHVDD------------SVDPVRDLEVISA 132 (374)
Q Consensus 84 ~~--~~~~~~v~D~~gl~~~~~~-~----------------~~~~~~~~il~l~~------------~~dP~~~l~ilde 132 (374)
.. .+...++.|++.+...... . ...+.+..+..+++ +.+| +++++||
T Consensus 89 ~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p--~lllLDE 166 (279)
T PRK13635 89 NPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQP--DIIILDE 166 (279)
T ss_pred CHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCC--CEEEEeC
Confidence 54 3445678887755321110 0 00111222223333 5789 9999999
Q ss_pred HHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 133 ELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 133 ~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
|+.++|+.....+++.+.++.++ +.+ |++..+. .||++ .+|++|+++..++
T Consensus 167 Pt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~-~~d~i-~~l~~G~i~~~g~ 223 (279)
T PRK13635 167 ATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAA-QADRV-IVMNKGEILEEGT 223 (279)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEE-EEEECCEEEEECC
Confidence 99999999999999999988765 444 9998876 59999 8999999886654
No 163
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.63 E-value=3.9e-17 Score=158.19 Aligned_cols=157 Identities=13% Similarity=0.179 Sum_probs=117.2
Q ss_pred ccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh----------hhc
Q 017295 15 RPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC----------QLF 80 (374)
Q Consensus 15 ~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~----------~~~ 80 (374)
..+|+++++. ..+||+|+||||||||+++|+|+ +.|++|.|.++|.++..+. ..|
T Consensus 34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl-----------~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~ 102 (331)
T PRK15079 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGL-----------VKATDGEVAWLGKDLLGMKDDEWRAVRSDIQM 102 (331)
T ss_pred eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCC-----------CCCCCcEEEECCEECCcCCHHHHHHHhCceEE
Confidence 5689998865 45999999999999999999999 7899999999998764321 146
Q ss_pred cCCCC---ccccchHhhHhhhhccccC-CCC---------------CC----CCCceeEecC------------CCCCch
Q 017295 81 KPKSA---VPAFLEIHDIAGLVRGAHE-GQG---------------AF----EDPDIIHVDD------------SVDPVR 125 (374)
Q Consensus 81 ~~~~~---~~~~~~v~D~~gl~~~~~~-~~~---------------~~----~~~~il~l~~------------~~dP~~ 125 (374)
.+|.. +++.+++.|++......+. +.. .+ .+.....+++ +.+|
T Consensus 103 v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P-- 180 (331)
T PRK15079 103 IFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEP-- 180 (331)
T ss_pred EecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCC--
Confidence 66663 4556788887654211110 000 11 1122223333 6789
Q ss_pred hHHHHHHHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 126 DLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 126 ~l~ilde~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+++++|||++++|......+++.+.++.++ +.+ |++..+..+||++ .+|.+|+++..++
T Consensus 181 ~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri-~vl~~G~ive~g~ 245 (331)
T PRK15079 181 KLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRV-LVMYLGHAVELGT 245 (331)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEEcC
Confidence 999999999999999999999999887754 443 9999999999999 9999999987664
No 164
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.63 E-value=6.2e-17 Score=148.13 Aligned_cols=149 Identities=17% Similarity=0.136 Sum_probs=112.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-----------hhccCCCC-ccccchH
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----------QLFKPKSA-VPAFLEI 92 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-----------~~~~~~~~-~~~~~~v 92 (374)
-..+|.|++|||||||+|+|+|+ +.|+.|.|.++|.-+.... .+|+.|+. ++++++|
T Consensus 25 GvTAlFG~SGsGKTslin~IaGL-----------~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tV 93 (352)
T COG4148 25 GITALFGPSGSGKTSLINMIAGL-----------TRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTV 93 (352)
T ss_pred ceEEEecCCCCChhhHHHHHhcc-----------CCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEE
Confidence 34899999999999999999999 8999999999997653211 15777776 7777887
Q ss_pred hhHhhhhccccCCCC-----------CCCCCceeEecC------------CCCCchhHHHHHHHHHhhcHHHHHHHHHHH
Q 017295 93 HDIAGLVRGAHEGQG-----------AFEDPDIIHVDD------------SVDPVRDLEVISAELRLKDIEFMERRIEDV 149 (374)
Q Consensus 93 ~D~~gl~~~~~~~~~-----------~~~~~~il~l~~------------~~dP~~~l~ilde~l~~~D~~~~~~~~~~i 149 (374)
.-+..++...+.... .+.+.....+++ ..+| +++++|||++.+|......++..+
T Consensus 94 rgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P--~LLLmDEPLaSLD~~RK~Eilpyl 171 (352)
T COG4148 94 RGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAP--ELLLMDEPLASLDLPRKREILPYL 171 (352)
T ss_pred ecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCC--CeeeecCchhhcccchhhHHHHHH
Confidence 777666543321100 001111112222 4579 999999999999999999999999
Q ss_pred HHHHHccCc------cchHHHHHHHHHHHHHHhCCCceeccCCC
Q 017295 150 EKSMKRSND------KQLKIEHELCQRVKAWLQDGKDVRLGDWK 187 (374)
Q Consensus 150 ~~~~~~~~~------H~~~~~~~~~d~v~~~L~~G~iv~~~~~~ 187 (374)
+++.++-.. |.+.++.+++|+| .+|++|++...|...
T Consensus 172 ERL~~e~~IPIlYVSHS~~Ev~RLAd~v-V~le~GkV~A~g~~e 214 (352)
T COG4148 172 ERLRDEINIPILYVSHSLDEVLRLADRV-VVLENGKVKASGPLE 214 (352)
T ss_pred HHHHHhcCCCEEEEecCHHHHHhhhheE-EEecCCeEEecCcHH
Confidence 988866443 9999999999999 999999998877643
No 165
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.63 E-value=5.5e-17 Score=150.11 Aligned_cols=158 Identities=15% Similarity=0.188 Sum_probs=114.4
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-----hhccCCC
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS 84 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-----~~~~~~~ 84 (374)
.+.+|+++++ |..+||+|+||||||||+++|+|. ++|+.|.|.++|.++.... ..|.+|.
T Consensus 12 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~-----------~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~ 80 (237)
T TIGR00968 12 SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGL-----------EQPDSGRIRLNGQDATRVHARDRKIGFVFQH 80 (237)
T ss_pred CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCEEcCcCChhhcCEEEEecC
Confidence 3468888765 566999999999999999999999 7899999999997764311 2466666
Q ss_pred C-ccccchHhhHhhhhccccCCCC-----------------CCCCCceeEecC------------CCCCchhHHHHHHHH
Q 017295 85 A-VPAFLEIHDIAGLVRGAHEGQG-----------------AFEDPDIIHVDD------------SVDPVRDLEVISAEL 134 (374)
Q Consensus 85 ~-~~~~~~v~D~~gl~~~~~~~~~-----------------~~~~~~il~l~~------------~~dP~~~l~ilde~l 134 (374)
. ++...++.+++.+......... .+.+.....++. +.+| ++.++|||+
T Consensus 81 ~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p--~llllDEP~ 158 (237)
T TIGR00968 81 YALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEP--QVLLLDEPF 158 (237)
T ss_pred hhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCC--CEEEEcCCc
Confidence 5 4555677776654322111000 001111122222 5688 999999999
Q ss_pred HhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 135 RLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 135 ~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
.++|....+..++.+.+...+ +.+ |+...+..+||++ .+|++|+++..++
T Consensus 159 ~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i-~~l~~g~i~~~~~ 214 (237)
T TIGR00968 159 GALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRI-VVMSNGKIEQIGS 214 (237)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEE-EEEECCEEEEecC
Confidence 999999999999999887654 444 9999999999999 8999999876543
No 166
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=3.4e-17 Score=154.74 Aligned_cols=156 Identities=16% Similarity=0.146 Sum_probs=113.3
Q ss_pred ccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh--------hhccC
Q 017295 15 RPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC--------QLFKP 82 (374)
Q Consensus 15 ~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~--------~~~~~ 82 (374)
+.+|+++++. ..+||+|+||||||||+++|+|. .+|+.|.|.++|.++.... ..|.+
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 83 (274)
T PRK13644 15 TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGL-----------LRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVF 83 (274)
T ss_pred CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCceEEECCEECCccccHHHHHhheEEEE
Confidence 4689988865 45999999999999999999999 7899999999998764211 14556
Q ss_pred CCC--ccccchHhhHhhhhccccCCC-----C------------CCCCCceeEecC------------CCCCchhHHHHH
Q 017295 83 KSA--VPAFLEIHDIAGLVRGAHEGQ-----G------------AFEDPDIIHVDD------------SVDPVRDLEVIS 131 (374)
Q Consensus 83 ~~~--~~~~~~v~D~~gl~~~~~~~~-----~------------~~~~~~il~l~~------------~~dP~~~l~ild 131 (374)
|.. .+...++.|++.+........ . .+.+..+..+++ +.+| +++++|
T Consensus 84 q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p--~lllLD 161 (274)
T PRK13644 84 QNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEP--ECLIFD 161 (274)
T ss_pred EChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCC--CEEEEe
Confidence 653 233467777765532111000 0 111222223332 5689 999999
Q ss_pred HHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 132 AELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 132 e~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
||+.++|+.....+++.+.++.+++.+ |++..+ ..||++ .+|++|+++..++
T Consensus 162 EPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~-~~~d~v-~~l~~G~i~~~g~ 218 (274)
T PRK13644 162 EVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEEL-HDADRI-IVMDRGKIVLEGE 218 (274)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH-hhCCEE-EEEECCEEEEECC
Confidence 999999999999999999887655554 999987 569999 9999999887664
No 167
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.63 E-value=7.4e-17 Score=149.54 Aligned_cols=160 Identities=16% Similarity=0.139 Sum_probs=112.9
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh------h--hhcc
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------C--QLFK 81 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l------~--~~~~ 81 (374)
++.+|+++++. ..++|+|+||||||||+++|+|... ..|++|.|.++|.++... . ..|.
T Consensus 12 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---------~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v 82 (243)
T TIGR01978 12 DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPS---------YEVTSGTILFKGQDLLELEPDERARAGLFLA 82 (243)
T ss_pred CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---------CCCCcceEEECCEecCCCCHHHhhccceEee
Confidence 35688888764 5699999999999999999999821 158999999999765321 1 1356
Q ss_pred CCCC-ccccchHhhHhhhhccccC----------CC---C--------CCC----CCceeE-ecC------------CCC
Q 017295 82 PKSA-VPAFLEIHDIAGLVRGAHE----------GQ---G--------AFE----DPDIIH-VDD------------SVD 122 (374)
Q Consensus 82 ~~~~-~~~~~~v~D~~gl~~~~~~----------~~---~--------~~~----~~~il~-l~~------------~~d 122 (374)
+|.. +++.+++.++..+...... .. . .+. +..+.. +++ +.+
T Consensus 83 ~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~ 162 (243)
T TIGR01978 83 FQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLE 162 (243)
T ss_pred eccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcC
Confidence 6664 4555666665543211000 00 0 111 111211 443 568
Q ss_pred CchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHH-HHHHHHHHhCCCceeccC
Q 017295 123 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHEL-CQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 123 P~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~-~d~v~~~L~~G~iv~~~~ 185 (374)
| +++++|||++++|......+++.+.+..+++.+ |+...+..+ ||++ .+|++|+++..++
T Consensus 163 p--~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i-~~l~~G~i~~~g~ 228 (243)
T TIGR01978 163 P--KLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYV-HVLLDGRIVKSGD 228 (243)
T ss_pred C--CEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeE-EEEeCCEEEEecC
Confidence 8 999999999999999999999999887655554 999999888 7999 8899999876654
No 168
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=5.1e-17 Score=145.58 Aligned_cols=153 Identities=16% Similarity=0.157 Sum_probs=109.6
Q ss_pred ccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhh-hh--hhccCCCC-c
Q 017295 15 RPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-LC--QLFKPKSA-V 86 (374)
Q Consensus 15 ~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~-l~--~~~~~~~~-~ 86 (374)
+.+|+++++. ..++|+|+||||||||+++|+|... ..|+.|+|.++|.++.. .. ..|.+|.. +
T Consensus 20 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---------~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~ 90 (192)
T cd03232 20 RQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKT---------AGVITGEILINGRPLDKNFQRSTGYVEQQDVH 90 (192)
T ss_pred eEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCc---------CCCcceEEEECCEehHHHhhhceEEecccCcc
Confidence 5688888764 4599999999999999999999721 24899999999987631 11 24566654 5
Q ss_pred cccchHhhHhhhhc---cccCCCCCCCCCceeEecCCCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----
Q 017295 87 PAFLEIHDIAGLVR---GAHEGQGAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND----- 158 (374)
Q Consensus 87 ~~~~~v~D~~gl~~---~~~~~~~~~~~~~il~l~~~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~----- 158 (374)
++.+++.++..+.. ..|.|+. ....+...-+.+| +++++|||++++|.......++.+.+..+.+.+
T Consensus 91 ~~~~tv~~~l~~~~~~~~LSgGe~---qrv~la~al~~~p--~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivt 165 (192)
T cd03232 91 SPNLTVREALRFSALLRGLSVEQR---KRLTIGVELAAKP--SILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTI 165 (192)
T ss_pred ccCCcHHHHHHHHHHHhcCCHHHh---HHHHHHHHHhcCC--cEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 55678888876642 3343432 0000000114467 899999999999999999999999887655544
Q ss_pred cchH-HHHHHHHHHHHHHhC-CCcee
Q 017295 159 KQLK-IEHELCQRVKAWLQD-GKDVR 182 (374)
Q Consensus 159 H~~~-~~~~~~d~v~~~L~~-G~iv~ 182 (374)
|+.. .+...||++ .+|++ |+++.
T Consensus 166 H~~~~~~~~~~d~i-~~l~~~g~i~~ 190 (192)
T cd03232 166 HQPSASIFEKFDRL-LLLKRGGKTVY 190 (192)
T ss_pred cCChHHHHhhCCEE-EEEcCCCeEEe
Confidence 9987 467889999 88887 88764
No 169
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=4.1e-17 Score=154.27 Aligned_cols=157 Identities=15% Similarity=0.160 Sum_probs=114.1
Q ss_pred ccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhh-------hh--hhcc
Q 017295 15 RPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFK 81 (374)
Q Consensus 15 ~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~-------l~--~~~~ 81 (374)
+.+|+++++. ..+||+|+||||||||+++|+|. .+|++|.|.++|.++.. .. ..|.
T Consensus 15 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v 83 (275)
T PRK13639 15 TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGI-----------LKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIV 83 (275)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCccEEEECCEECccccchHHHHHhheEEE
Confidence 4588888764 56999999999999999999999 78999999999987631 11 1466
Q ss_pred CCCC--ccccchHhhHhhhhccccCCCC-----------------CCCCCceeEecC------------CCCCchhHHHH
Q 017295 82 PKSA--VPAFLEIHDIAGLVRGAHEGQG-----------------AFEDPDIIHVDD------------SVDPVRDLEVI 130 (374)
Q Consensus 82 ~~~~--~~~~~~v~D~~gl~~~~~~~~~-----------------~~~~~~il~l~~------------~~dP~~~l~il 130 (374)
+|.. .....++.|++.+......... .+.+..+..+++ +.+| +++++
T Consensus 84 ~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p--~llll 161 (275)
T PRK13639 84 FQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKP--EIIVL 161 (275)
T ss_pred eeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCC--CEEEE
Confidence 6663 2223577777754321110000 111122222222 5688 99999
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 131 SAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 131 de~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
|||+.++|+......++.+.++.+++.+ |++..+..+||++ .+|++|+++..++
T Consensus 162 DEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i-~~l~~G~i~~~g~ 220 (275)
T PRK13639 162 DEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKV-YVMSDGKIIKEGT 220 (275)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 9999999999999999999987755544 9999999999999 8999999987664
No 170
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.63 E-value=6.9e-17 Score=164.80 Aligned_cols=160 Identities=13% Similarity=0.139 Sum_probs=118.3
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh--------hhhcc
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------CQLFK 81 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l--------~~~~~ 81 (374)
++.+|+++++. ..+||+|+||||||||+++|+|. ++|++|.|.++|.++... ...|.
T Consensus 10 ~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 10 GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGI-----------YQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC-----------CCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 35689988864 56999999999999999999999 789999999999765321 12466
Q ss_pred CCCC-ccccchHhhHhhhhccccCCC----C----------------CCCCCceeEecC------------CCCCchhHH
Q 017295 82 PKSA-VPAFLEIHDIAGLVRGAHEGQ----G----------------AFEDPDIIHVDD------------SVDPVRDLE 128 (374)
Q Consensus 82 ~~~~-~~~~~~v~D~~gl~~~~~~~~----~----------------~~~~~~il~l~~------------~~dP~~~l~ 128 (374)
+|.. .+..+++.|++.+......+. . ...+..+-.+++ +.+| +++
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p--~ll 156 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNA--KIV 156 (491)
T ss_pred ecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCC--CEE
Confidence 7764 455678888776532110000 0 011122222333 5689 999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCCC
Q 017295 129 VISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 187 (374)
Q Consensus 129 ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~~ 187 (374)
++|||++++|+.....+++.+.++.+.+.+ |++..+..+||++ .+|++|+++..++..
T Consensus 157 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i-~~l~~G~i~~~~~~~ 219 (491)
T PRK10982 157 IMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEI-TILRDGQWIATQPLA 219 (491)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEE-EEEECCEEEeecChh
Confidence 999999999999999999999887655554 9999999999999 999999998766543
No 171
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.62 E-value=8.2e-17 Score=147.71 Aligned_cols=151 Identities=23% Similarity=0.255 Sum_probs=105.5
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCcccc
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAF 89 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~ 89 (374)
.+.+|+++++ |..++|+|+||||||||+++|+|. .+|++|.|.++|..+...... ..+.+.
T Consensus 34 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~p~~G~i~~~g~~~~~~~~~----~~~~~~ 98 (224)
T cd03220 34 EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGI-----------YPPDSGTVTVRGRVSSLLGLG----GGFNPE 98 (224)
T ss_pred CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEEchhhccc----ccCCCC
Confidence 4678998885 456999999999999999999999 789999999999764322110 012233
Q ss_pred chHhhHhhhhccccC-----------------CCCCCCCCceeEecC------------CCCCchhHHHHHHHHHhhcHH
Q 017295 90 LEIHDIAGLVRGAHE-----------------GQGAFEDPDIIHVDD------------SVDPVRDLEVISAELRLKDIE 140 (374)
Q Consensus 90 ~~v~D~~gl~~~~~~-----------------~~~~~~~~~il~l~~------------~~dP~~~l~ilde~l~~~D~~ 140 (374)
+++.|++.+...... +.....+..+..+++ +.+| +++++|||++++|..
T Consensus 99 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p--~llllDEP~~gLD~~ 176 (224)
T cd03220 99 LTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEP--DILLIDEVLAVGDAA 176 (224)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCC--CEEEEeCCcccCCHH
Confidence 455555443211000 000011112222222 5688 999999999999999
Q ss_pred HHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCcee
Q 017295 141 FMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVR 182 (374)
Q Consensus 141 ~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~ 182 (374)
.....++.+.+..+++.+ |+...+..+||++ .+|++|+++.
T Consensus 177 ~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i-~~l~~G~i~~ 222 (224)
T cd03220 177 FQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRA-LVLEKGKIRF 222 (224)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEe
Confidence 999999999887655444 9999999999999 8888888754
No 172
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.62 E-value=9.9e-17 Score=164.22 Aligned_cols=160 Identities=11% Similarity=0.069 Sum_probs=118.4
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCC--ceeEEEeCCcchhhh--------hhh
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP--NEARVNIPDERFEWL--------CQL 79 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p--~~G~i~~~g~~~~~l--------~~~ 79 (374)
++.+|+++++. ..+||+|+||||||||+|+|+|. +.| ++|.|.++|.++... ...
T Consensus 17 ~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 85 (506)
T PRK13549 17 GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGV-----------YPHGTYEGEIIFEGEELQASNIRDTERAGIA 85 (506)
T ss_pred CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCCeEEEECCEECCCCCHHHHHHCCeE
Confidence 45789998865 45999999999999999999999 665 899999999765321 124
Q ss_pred ccCCCC-ccccchHhhHhhhhccccC-C---CC-------------C---CCCCceeEecC------------CCCCchh
Q 017295 80 FKPKSA-VPAFLEIHDIAGLVRGAHE-G---QG-------------A---FEDPDIIHVDD------------SVDPVRD 126 (374)
Q Consensus 80 ~~~~~~-~~~~~~v~D~~gl~~~~~~-~---~~-------------~---~~~~~il~l~~------------~~dP~~~ 126 (374)
|.+|.. ++..+++.|++.+...... + .. . ..+..+-.+++ +.+| +
T Consensus 86 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p--~ 163 (506)
T PRK13549 86 IIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQA--R 163 (506)
T ss_pred EEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCC--C
Confidence 667765 5566788888765432110 0 00 1 11122222333 5789 9
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCCC
Q 017295 127 LEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 187 (374)
Q Consensus 127 l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~~ 187 (374)
++++|||++++|+.....+++.+.++.+++.+ |++..+..+||++ .+|++|+++..++..
T Consensus 164 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v-~~l~~G~i~~~~~~~ 228 (506)
T PRK13549 164 LLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTI-CVIRDGRHIGTRPAA 228 (506)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEE-EEEECCEEeeecccc
Confidence 99999999999999999999999887655544 9999999999999 999999988766543
No 173
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.62 E-value=6.4e-17 Score=148.61 Aligned_cols=151 Identities=17% Similarity=0.142 Sum_probs=107.7
Q ss_pred cccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh-----------hhhc
Q 017295 16 PILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----------CQLF 80 (374)
Q Consensus 16 ~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l-----------~~~~ 80 (374)
.+|+++++. ..++|+|+||||||||+++|+|. .+|++|.|.++|.++... ...|
T Consensus 24 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~ 92 (228)
T PRK10584 24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGL-----------DDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGF 92 (228)
T ss_pred EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcC-----------CCCCCeeEEECCEEcccCCHHHHHHHHhheEEE
Confidence 589888764 46999999999999999999999 889999999999765321 1246
Q ss_pred cCCCC-ccccchHhhHhhhhccccCCC------C--------C---CCCCceeEecC------------CCCCchhHHHH
Q 017295 81 KPKSA-VPAFLEIHDIAGLVRGAHEGQ------G--------A---FEDPDIIHVDD------------SVDPVRDLEVI 130 (374)
Q Consensus 81 ~~~~~-~~~~~~v~D~~gl~~~~~~~~------~--------~---~~~~~il~l~~------------~~dP~~~l~il 130 (374)
.+|.. ++..+++.|+..+........ . . +.+..+..+++ +.+| +++++
T Consensus 93 ~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p--~llll 170 (228)
T PRK10584 93 VFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRP--DVLFA 170 (228)
T ss_pred EEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCC--CEEEE
Confidence 66664 455567777765431111000 0 0 11111222222 5688 99999
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCce
Q 017295 131 SAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDV 181 (374)
Q Consensus 131 de~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv 181 (374)
|||+.++|+...+.+.+.+.+..++ +.+ |+...+. .||++ .+|++|+++
T Consensus 171 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~i-~~l~~g~i~ 225 (228)
T PRK10584 171 DEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAA-RCDRR-LRLVNGQLQ 225 (228)
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEE-EEEECCEEE
Confidence 9999999999999999999887654 443 9988764 58998 888888765
No 174
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.62 E-value=9.7e-17 Score=147.34 Aligned_cols=156 Identities=15% Similarity=0.149 Sum_probs=112.4
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccC---CceeEEEeCCcchhhh----hhhccC
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE---PNEARVNIPDERFEWL----CQLFKP 82 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~---p~~G~i~~~g~~~~~l----~~~~~~ 82 (374)
.+.+|+++++. ..++|+|+||||||||+++|+|. .. |++|.|.++|.++... ...|.+
T Consensus 19 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~-----------~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~ 87 (226)
T cd03234 19 YARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGR-----------VEGGGTTSGQILFNGQPRKPDQFQKCVAYVR 87 (226)
T ss_pred ccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCc-----------cCCCCCCceEEEECCEECChHHhcccEEEeC
Confidence 36789988764 56999999999999999999999 77 8999999999765321 124667
Q ss_pred CCC-ccccchHhhHhhhhcccc--CC-CC--------C----------CCCCceeEecC------------CCCCchhHH
Q 017295 83 KSA-VPAFLEIHDIAGLVRGAH--EG-QG--------A----------FEDPDIIHVDD------------SVDPVRDLE 128 (374)
Q Consensus 83 ~~~-~~~~~~v~D~~gl~~~~~--~~-~~--------~----------~~~~~il~l~~------------~~dP~~~l~ 128 (374)
|.. +++.+++.|+..+..... .. .. . ..+..+..+++ +.+| +++
T Consensus 88 q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p--~il 165 (226)
T cd03234 88 QDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDP--KVL 165 (226)
T ss_pred CCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCC--CEE
Confidence 765 556678887776532110 00 00 0 00111112222 5688 999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cch-HHHHHHHHHHHHHHhCCCceec
Q 017295 129 VISAELRLKDIEFMERRIEDVEKSMKRSND-----KQL-KIEHELCQRVKAWLQDGKDVRL 183 (374)
Q Consensus 129 ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~-~~~~~~~d~v~~~L~~G~iv~~ 183 (374)
++|||+.++|+.....+++.+.+..+++.+ |+. .++..+||++ .+|++|+++..
T Consensus 166 llDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i-~~l~~G~i~~~ 225 (226)
T cd03234 166 ILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRI-LLLSSGEIVYS 225 (226)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEE-EEEeCCEEEec
Confidence 999999999999999999999887655544 988 5888999999 88999987643
No 175
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.62 E-value=5.4e-17 Score=156.54 Aligned_cols=158 Identities=13% Similarity=0.064 Sum_probs=114.8
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh--------------
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-------------- 76 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l-------------- 76 (374)
+.+|+++++ |..+||+|+||||||||+++|+|+ ..|++|.|.++|.++...
T Consensus 39 ~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl-----------~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~ 107 (320)
T PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGL-----------IKSKYGTIQVGDIYIGDKKNNHELITNPYSKK 107 (320)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCeEEECCEEcccccccccccccccccc
Confidence 468999876 456999999999999999999999 889999999998665321
Q ss_pred -------h--hhccCCCC--ccccchHhhHhhhhccccC-CC----C---------C----CCCCceeEecC--------
Q 017295 77 -------C--QLFKPKSA--VPAFLEIHDIAGLVRGAHE-GQ----G---------A----FEDPDIIHVDD-------- 119 (374)
Q Consensus 77 -------~--~~~~~~~~--~~~~~~v~D~~gl~~~~~~-~~----~---------~----~~~~~il~l~~-------- 119 (374)
. ..|.+|.. .....++.+++.+...... .. . . +.+.....+++
T Consensus 108 ~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvai 187 (320)
T PRK13631 108 IKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAI 187 (320)
T ss_pred cchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHH
Confidence 1 13556543 1222477777655321100 00 0 1 11222333443
Q ss_pred ----CCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 120 ----SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 120 ----~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
+.+| +++++|||+.++|......+++.+.++.+++.+ |+++.+..+||++ .+|++|+++..++.
T Consensus 188 AraL~~~p--~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri-~vl~~G~i~~~g~~ 260 (320)
T PRK13631 188 AGILAIQP--EILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEV-IVMDKGKILKTGTP 260 (320)
T ss_pred HHHHHcCC--CEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEE-EEEECCEEEEeCCH
Confidence 5789 999999999999999999999999887655554 9999999999999 99999999877653
No 176
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=1.3e-16 Score=148.78 Aligned_cols=157 Identities=15% Similarity=0.112 Sum_probs=114.4
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccC-----CceeEEEeCCcchhhhh-------
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE-----PNEARVNIPDERFEWLC------- 77 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~-----p~~G~i~~~g~~~~~l~------- 77 (374)
++.+|+++++. ..+||+|+||||||||+++|+|. .. |++|.|.++|.++....
T Consensus 15 ~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~-----------~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (250)
T PRK14247 15 QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRL-----------IELYPEARVSGEVYLDGQDIFKMDVIELRRR 83 (250)
T ss_pred CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------CCCCCCCCCceEEEECCEECCcCCHHHHhcc
Confidence 34688888764 56999999999999999999999 54 47999999998764321
Q ss_pred hhccCCCC-ccccchHhhHhhhhccccCC--C-C-------------CC-------CCCceeEecC------------CC
Q 017295 78 QLFKPKSA-VPAFLEIHDIAGLVRGAHEG--Q-G-------------AF-------EDPDIIHVDD------------SV 121 (374)
Q Consensus 78 ~~~~~~~~-~~~~~~v~D~~gl~~~~~~~--~-~-------------~~-------~~~~il~l~~------------~~ 121 (374)
..|.+|.. ++..+++.|++.+....... . . .+ .+..+..+++ +.
T Consensus 84 i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~ 163 (250)
T PRK14247 84 VQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAF 163 (250)
T ss_pred EEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 14677775 45667888887653211100 0 0 11 1112222332 56
Q ss_pred CCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 122 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 122 dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+| +++++|||++++|........+.+.+.. ++.+ |+...+..+||++ .+|++|+++..++
T Consensus 164 ~p--~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~~~d~i-~~l~~G~i~~~g~ 228 (250)
T PRK14247 164 QP--EVLLADEPTANLDPENTAKIESLFLELK-KDMTIVLVTHFPQQAARISDYV-AFLYKGQIVEWGP 228 (250)
T ss_pred CC--CEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEE-EEEECCeEEEECC
Confidence 89 9999999999999999999999998875 3444 9999999999999 8999999876654
No 177
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.61 E-value=1.4e-16 Score=148.22 Aligned_cols=155 Identities=16% Similarity=0.177 Sum_probs=113.0
Q ss_pred ccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCc-----eeEEEeCCcchhhh-------h-
Q 017295 15 RPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN-----EARVNIPDERFEWL-------C- 77 (374)
Q Consensus 15 ~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~-----~G~i~~~g~~~~~l-------~- 77 (374)
+.+|+++++. ..++|+|+||||||||+++|+|. ..|+ +|.|.++|.++... .
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 82 (247)
T TIGR00972 14 KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRM-----------NDLVPGVRIEGKVLFDGQDIYDKKIDVVELRR 82 (247)
T ss_pred eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhcc-----------CCCCcCCCCceEEEECCEEccccccchHHHHh
Confidence 4588888764 56999999999999999999999 7777 99999999876421 1
Q ss_pred -hhccCCCC-ccccchHhhHhhhhccccCCC--C-------------CCC-------CCceeEecC------------CC
Q 017295 78 -QLFKPKSA-VPAFLEIHDIAGLVRGAHEGQ--G-------------AFE-------DPDIIHVDD------------SV 121 (374)
Q Consensus 78 -~~~~~~~~-~~~~~~v~D~~gl~~~~~~~~--~-------------~~~-------~~~il~l~~------------~~ 121 (374)
..|.+|.. ++. .++.|++.+........ . .+. +..+..+++ +.
T Consensus 83 ~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~ 161 (247)
T TIGR00972 83 RVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAV 161 (247)
T ss_pred heEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhc
Confidence 24667765 444 77777776532111100 0 111 111222332 56
Q ss_pred CCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 122 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 122 dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+| +++++|||++++|+......++.+.+..+. .+ |++..+..+||++ .+|++|+++..++
T Consensus 162 ~p--~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tiiivsH~~~~~~~~~d~i-~~l~~G~i~~~~~ 226 (247)
T TIGR00972 162 EP--EVLLLDEPTSALDPIATGKIEELIQELKKK-YTIVIVTHNMQQAARISDRT-AFFYDGELVEYGP 226 (247)
T ss_pred CC--CEEEEeCCcccCCHHHHHHHHHHHHHHHhc-CeEEEEecCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 89 999999999999999999999999887643 43 9999999999999 9999999886654
No 178
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.61 E-value=1.1e-16 Score=163.96 Aligned_cols=160 Identities=16% Similarity=0.143 Sum_probs=118.9
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh--------hhcc
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC--------QLFK 81 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~--------~~~~ 81 (374)
++.+|+++++ |..+||+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.
T Consensus 17 ~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl-----------~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v 85 (510)
T PRK09700 17 PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGI-----------HEPTKGTITINNINYNKLDHKLAAQLGIGII 85 (510)
T ss_pred CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC-----------cCCCccEEEECCEECCCCCHHHHHHCCeEEE
Confidence 4568999886 456999999999999999999999 7899999999997764321 2466
Q ss_pred CCCC-ccccchHhhHhhhhcccc---CCC----------C-----------CCCCCceeEecC------------CCCCc
Q 017295 82 PKSA-VPAFLEIHDIAGLVRGAH---EGQ----------G-----------AFEDPDIIHVDD------------SVDPV 124 (374)
Q Consensus 82 ~~~~-~~~~~~v~D~~gl~~~~~---~~~----------~-----------~~~~~~il~l~~------------~~dP~ 124 (374)
+|.. ++..+++.|++.+..... .+. . ...+..+-.+++ +.+|
T Consensus 86 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p- 164 (510)
T PRK09700 86 YQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDA- 164 (510)
T ss_pred eecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCC-
Confidence 7764 555678888775532100 000 0 011222223333 5789
Q ss_pred hhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCCC
Q 017295 125 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 187 (374)
Q Consensus 125 ~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~~ 187 (374)
+++++|||++++|+.....+++.+.++.+++.+ |++..+..+||++ .+|++|+++..++.+
T Consensus 165 -~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v-~~l~~G~i~~~g~~~ 230 (510)
T PRK09700 165 -KVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRY-TVMKDGSSVCSGMVS 230 (510)
T ss_pred -CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE-EEEECCEEeeecchh
Confidence 999999999999999999999999988765554 9999999999999 999999998766543
No 179
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.61 E-value=1.6e-16 Score=149.88 Aligned_cols=158 Identities=21% Similarity=0.288 Sum_probs=114.3
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCc--------eeEEEeCCcchhhh-----
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN--------EARVNIPDERFEWL----- 76 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~--------~G~i~~~g~~~~~l----- 76 (374)
++.+|+++++ |..++|+|+||||||||+++|+|. ++|+ +|.|.++|.++...
T Consensus 13 ~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~-----------~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (272)
T PRK13547 13 HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGD-----------LTGGGAPRGARVTGDVTLNGEPLAAIDAPRL 81 (272)
T ss_pred CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCcccccccCCceEEEECCEEcccCCHHHH
Confidence 3568888775 456999999999999999999999 6777 89999999765321
Q ss_pred h--hhccCCCC-ccccchHhhHhhhhccccC---CC----C--------------CCCCCceeEecC------------C
Q 017295 77 C--QLFKPKSA-VPAFLEIHDIAGLVRGAHE---GQ----G--------------AFEDPDIIHVDD------------S 120 (374)
Q Consensus 77 ~--~~~~~~~~-~~~~~~v~D~~gl~~~~~~---~~----~--------------~~~~~~il~l~~------------~ 120 (374)
. ..|.+|.. ....+++.|++.+...... +. . .+.+..+..+++ +
T Consensus 82 ~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~ 161 (272)
T PRK13547 82 ARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLA 161 (272)
T ss_pred HhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 1 14667664 3344788887755321100 00 0 111122223332 3
Q ss_pred ---------CCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 121 ---------VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 121 ---------~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
.+| +++++|||+.++|+.....+.+.+.++.+. +.+ |+...+..+||++ .+|++|+++..++
T Consensus 162 ~~~~~~~~~~~p--~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i-~~l~~G~i~~~g~ 238 (272)
T PRK13547 162 QLWPPHDAAQPP--RYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRI-AMLADGAIVAHGA 238 (272)
T ss_pred ccccccccCCCC--CEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEE-EEEECCeEEEecC
Confidence 378 999999999999999999999999887654 444 9999999999999 8999999886654
No 180
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.61 E-value=2.6e-16 Score=144.27 Aligned_cols=150 Identities=16% Similarity=0.187 Sum_probs=107.1
Q ss_pred ccCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh--hhccCCCC-cc--ccchHhhH
Q 017295 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC--QLFKPKSA-VP--AFLEIHDI 95 (374)
Q Consensus 21 i~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~--~~~~~~~~-~~--~~~~v~D~ 95 (374)
++.|..+||+|+||||||||+++|+|. .+|++|.|.++|.++.... ..|.+|.. +. ..+++.++
T Consensus 3 i~~Ge~~~l~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~ 71 (223)
T TIGR03771 3 ADKGELLGLLGPNGAGKTTLLRAILGL-----------IPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHT 71 (223)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHH
Confidence 567899999999999999999999999 7899999999998753322 24666654 21 23566666
Q ss_pred hhhhccc-------cCCC--C---------CC---CCCceeEecC------------CCCCchhHHHHHHHHHhhcHHHH
Q 017295 96 AGLVRGA-------HEGQ--G---------AF---EDPDIIHVDD------------SVDPVRDLEVISAELRLKDIEFM 142 (374)
Q Consensus 96 ~gl~~~~-------~~~~--~---------~~---~~~~il~l~~------------~~dP~~~l~ilde~l~~~D~~~~ 142 (374)
..+.... .... . .+ .+..+-.+++ +.+| +++++|||+.++|+...
T Consensus 72 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p--~llilDEP~~~LD~~~~ 149 (223)
T TIGR03771 72 VMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRP--SVLLLDEPFTGLDMPTQ 149 (223)
T ss_pred HHhccccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCC--CEEEEeCCcccCCHHHH
Confidence 5432100 0000 0 11 1111222222 5789 99999999999999999
Q ss_pred HHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 143 ERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 143 ~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
....+.+.+..+++.+ |++..+..+||++ .+| +|+++..++
T Consensus 150 ~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i-~~l-~G~i~~~~~ 195 (223)
T TIGR03771 150 ELLTELFIELAGAGTAILMTTHDLAQAMATCDRV-VLL-NGRVIADGT 195 (223)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEE-EEE-CCEEEeecC
Confidence 9999999887655544 9999999999999 677 798886654
No 181
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.61 E-value=7.9e-17 Score=145.25 Aligned_cols=156 Identities=21% Similarity=0.168 Sum_probs=110.5
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh--------hhcc
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC--------QLFK 81 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~--------~~~~ 81 (374)
++.+|+++++. ..++|+|+||||||||+++|+|... ..|++|.|.++|.++.... ..|.
T Consensus 12 ~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---------~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 82 (200)
T cd03217 12 GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPK---------YEVTEGEILFKGEDITDLPPEERARLGIFLA 82 (200)
T ss_pred CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCc---------CCCCccEEEECCEECCcCCHHHHhhCcEEEe
Confidence 34688888764 5699999999999999999999810 2589999999998764321 2356
Q ss_pred CCCC-ccccchHhhHhhhh-ccccCCCCCCCCCceeEecCCCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-
Q 017295 82 PKSA-VPAFLEIHDIAGLV-RGAHEGQGAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND- 158 (374)
Q Consensus 82 ~~~~-~~~~~~v~D~~gl~-~~~~~~~~~~~~~~il~l~~~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~- 158 (374)
+|.. +++..++.++.... ...|.|+. ....+...-+.+| +++++|||+.++|.......++.+.+..+++.+
T Consensus 83 ~q~~~~~~~~~~~~~l~~~~~~LS~G~~---qrv~laral~~~p--~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~ti 157 (200)
T cd03217 83 FQYPPEIPGVKNADFLRYVNEGFSGGEK---KRNEILQLLLLEP--DLAILDEPDSGLDIDALRLVAEVINKLREEGKSV 157 (200)
T ss_pred ecChhhccCccHHHHHhhccccCCHHHH---HHHHHHHHHhcCC--CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEE
Confidence 6664 45556666655222 22333322 0000000114468 999999999999999999999999887655554
Q ss_pred ----cchHHHHH-HHHHHHHHHhCCCceecc
Q 017295 159 ----KQLKIEHE-LCQRVKAWLQDGKDVRLG 184 (374)
Q Consensus 159 ----H~~~~~~~-~~d~v~~~L~~G~iv~~~ 184 (374)
|+...+.. ++|++ .+|++|+++..+
T Consensus 158 ii~sh~~~~~~~~~~d~i-~~l~~G~i~~~~ 187 (200)
T cd03217 158 LIITHYQRLLDYIKPDRV-HVLYDGRIVKSG 187 (200)
T ss_pred EEEecCHHHHHHhhCCEE-EEEECCEEEEEc
Confidence 99998877 79999 889999987665
No 182
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.60 E-value=9.1e-17 Score=151.61 Aligned_cols=157 Identities=15% Similarity=0.149 Sum_probs=112.6
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh-----h--hhccC
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C--QLFKP 82 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l-----~--~~~~~ 82 (374)
++.+|+++++. ..+||+|+||||||||+++|+|. .+|++|.|.++|.++... . ..|.+
T Consensus 21 ~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~ 89 (271)
T PRK13632 21 ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGL-----------LKPQSGEIKIDGITISKENLKEIRKKIGIIF 89 (271)
T ss_pred CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCceEEECCEecCcCCHHHHhcceEEEE
Confidence 45689988864 46999999999999999999999 789999999999876421 1 14666
Q ss_pred CCC--ccccchHhhHhhhhccccC-CCC----------------CCCCCceeEecC------------CCCCchhHHHHH
Q 017295 83 KSA--VPAFLEIHDIAGLVRGAHE-GQG----------------AFEDPDIIHVDD------------SVDPVRDLEVIS 131 (374)
Q Consensus 83 ~~~--~~~~~~v~D~~gl~~~~~~-~~~----------------~~~~~~il~l~~------------~~dP~~~l~ild 131 (374)
|.. .+...++.|+..+...... ... .+.+..+..+++ +.+| +++++|
T Consensus 90 q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p--~lllLD 167 (271)
T PRK13632 90 QNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNP--EIIIFD 167 (271)
T ss_pred eCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCC--CEEEEe
Confidence 663 3445677777755321110 000 011111222222 5689 999999
Q ss_pred HHHHhhcHHHHHHHHHHHHHHHHcc-Cc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 132 AELRLKDIEFMERRIEDVEKSMKRS-ND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 132 e~l~~~D~~~~~~~~~~i~~~~~~~-~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
||+.++|......+++.+.+..+++ .+ |+...+. .||++ .+|++|+++..++
T Consensus 168 EP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v-~~l~~G~i~~~g~ 225 (271)
T PRK13632 168 ESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKV-IVFSEGKLIAQGK 225 (271)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEE-EEEECCEEEEecC
Confidence 9999999999999999998876543 33 9988875 79999 8899999876654
No 183
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.60 E-value=1e-16 Score=155.02 Aligned_cols=157 Identities=15% Similarity=0.124 Sum_probs=114.2
Q ss_pred ccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh----------hhc
Q 017295 15 RPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC----------QLF 80 (374)
Q Consensus 15 ~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~----------~~~ 80 (374)
..+|+++++. ..+||+|+||||||||+++|+|+ +.|++|.|.++|.++..+. ..|
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl-----------~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~ 96 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMI-----------ETPTGGELYYQGQDLLKADPEAQKLLRQKIQI 96 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcC-----------CCCCCcEEEECCEEcCcCCHHHHHHHhCCEEE
Confidence 5789998864 55999999999999999999999 7799999999998764321 135
Q ss_pred cCCCC---ccccchHhhHhhhhccccCCCC---------------CC----CCCceeEecC------------CCCCchh
Q 017295 81 KPKSA---VPAFLEIHDIAGLVRGAHEGQG---------------AF----EDPDIIHVDD------------SVDPVRD 126 (374)
Q Consensus 81 ~~~~~---~~~~~~v~D~~gl~~~~~~~~~---------------~~----~~~~il~l~~------------~~dP~~~ 126 (374)
.+|.. +.+.+++.+++......+.+.. .+ .+...-.+++ +.+| +
T Consensus 97 v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P--~ 174 (327)
T PRK11308 97 VFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDP--D 174 (327)
T ss_pred EEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCC--C
Confidence 56653 4455566555432111110000 11 1112223333 5789 9
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 127 LEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 127 l~ilde~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
++++|||+.++|......+++.+.++.++ +.+ |++..+..+||++ .+|..|+++..++
T Consensus 175 lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv-~vm~~G~ive~g~ 238 (327)
T PRK11308 175 VVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEV-MVMYLGRCVEKGT 238 (327)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 99999999999999999999999887754 443 9999999999999 9999999987764
No 184
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.60 E-value=9.5e-17 Score=141.41 Aligned_cols=141 Identities=18% Similarity=0.189 Sum_probs=100.5
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-------hhccCC
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPK 83 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-------~~~~~~ 83 (374)
+.+|+++++ |..++|+|+||||||||+++|+|. .+|++|.|.++|.++.... ..|.+|
T Consensus 15 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q 83 (173)
T cd03246 15 PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGL-----------LRPTSGRVRLDGADISQWDPNELGDHVGYLPQ 83 (173)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhc-----------cCCCCCeEEECCEEcccCCHHHHHhheEEECC
Confidence 457888775 456999999999999999999999 7899999999997664321 135666
Q ss_pred CC-ccccchHhhHhhhhccccCCCCCCCCCceeEecCCCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc----
Q 017295 84 SA-VPAFLEIHDIAGLVRGAHEGQGAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND---- 158 (374)
Q Consensus 84 ~~-~~~~~~v~D~~gl~~~~~~~~~~~~~~~il~l~~~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~---- 158 (374)
.. ++. .++.|+. .|.|+. ....+...-+.+| +++++|||+.++|+......++.+.+..+++.+
T Consensus 84 ~~~~~~-~tv~~~l-----LS~G~~---qrv~la~al~~~p--~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~ 152 (173)
T cd03246 84 DDELFS-GSIAENI-----LSGGQR---QRLGLARALYGNP--RILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVI 152 (173)
T ss_pred CCcccc-CcHHHHC-----cCHHHH---HHHHHHHHHhcCC--CEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 64 333 4777765 233321 0000000113467 899999999999999999999999887655444
Q ss_pred -cchHHHHHHHHHHHHHHhCCC
Q 017295 159 -KQLKIEHELCQRVKAWLQDGK 179 (374)
Q Consensus 159 -H~~~~~~~~~d~v~~~L~~G~ 179 (374)
|+...+ ..||++ .+|++|+
T Consensus 153 sh~~~~~-~~~d~v-~~l~~G~ 172 (173)
T cd03246 153 AHRPETL-ASADRI-LVLEDGR 172 (173)
T ss_pred eCCHHHH-HhCCEE-EEEECCC
Confidence 988776 578888 7777665
No 185
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.60 E-value=7e-17 Score=149.33 Aligned_cols=155 Identities=17% Similarity=0.191 Sum_probs=110.0
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-------hhccCC
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPK 83 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-------~~~~~~ 83 (374)
+.+|+++++ |..+||+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.+|
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q 84 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERF-----------YDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQ 84 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhcc-----------CCCCCCEEEECCEehhhcCHHHHHhhEEEECC
Confidence 468888775 556999999999999999999999 7899999999997654211 246666
Q ss_pred CCccccchHhhHhhhhccccC-----------CCC----CC-------CCCceeEecC------------CCCCchhHHH
Q 017295 84 SAVPAFLEIHDIAGLVRGAHE-----------GQG----AF-------EDPDIIHVDD------------SVDPVRDLEV 129 (374)
Q Consensus 84 ~~~~~~~~v~D~~gl~~~~~~-----------~~~----~~-------~~~~il~l~~------------~~dP~~~l~i 129 (374)
.......++.|++.+...... +.. .+ ....+..+++ +.+| ++++
T Consensus 85 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p--~lll 162 (238)
T cd03249 85 EPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNP--KILL 162 (238)
T ss_pred chhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCC--CEEE
Confidence 642223477777654311100 000 00 0111122332 5689 9999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 130 ISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 130 lde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+|||+.++|+.....+++.+.... ++.+ |++..+. .||++ .+|++|+++..++
T Consensus 163 lDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~~~-~~d~v-~~l~~G~i~~~~~ 220 (238)
T cd03249 163 LDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLSTIR-NADLI-AVLQNGQVVEQGT 220 (238)
T ss_pred EeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHh-hCCEE-EEEECCEEEEeCC
Confidence 999999999999999999998775 5543 9998886 89999 8999999876543
No 186
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.60 E-value=2.4e-16 Score=145.16 Aligned_cols=150 Identities=13% Similarity=0.138 Sum_probs=105.5
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCC----ceeEEEeCCcchhhh-----hhhccCCCC---cccc
Q 017295 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP----NEARVNIPDERFEWL-----CQLFKPKSA---VPAF 89 (374)
Q Consensus 22 ~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p----~~G~i~~~g~~~~~l-----~~~~~~~~~---~~~~ 89 (374)
..|..++|+|+||||||||+++|+|. .+| ++|.|.++|.++... ...|.+|.. ++..
T Consensus 10 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 10 KRGEVLALVGESGSGKSLTCLAILGL-----------LPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcc
Confidence 45677999999999999999999999 667 899999999876432 124566653 3334
Q ss_pred chHhhHhhhhcccc---CC--CC---------CCC------CCceeEecC------------CCCCchhHHHHHHHHHhh
Q 017295 90 LEIHDIAGLVRGAH---EG--QG---------AFE------DPDIIHVDD------------SVDPVRDLEVISAELRLK 137 (374)
Q Consensus 90 ~~v~D~~gl~~~~~---~~--~~---------~~~------~~~il~l~~------------~~dP~~~l~ilde~l~~~ 137 (374)
+++.+++.+..... .. .. .+. +..+..+++ +.+| +++++|||++++
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p--~vllLDEPt~~L 156 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEP--PFLIADEPTTDL 156 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCC--CEEEEcCCcccc
Confidence 55554432211000 00 00 111 122223333 5689 999999999999
Q ss_pred cHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 138 DIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 138 D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
|........+.+.+..++ +.+ |+++.+..+||++ .+|++|+++..++
T Consensus 157 D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i-~~l~~G~i~~~~~ 209 (230)
T TIGR02770 157 DVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEV-AVMDDGRIVERGT 209 (230)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 999999999999887654 444 9999999999999 8999999886653
No 187
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.60 E-value=3.6e-16 Score=134.68 Aligned_cols=161 Identities=16% Similarity=0.210 Sum_probs=121.4
Q ss_pred ccccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhh-------------
Q 017295 13 AERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW------------- 75 (374)
Q Consensus 13 ~~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~------------- 75 (374)
+.-.||+.++.. ..|.|||.+|||||||++||.-+ ..|+.|.|.++|+.+.-
T Consensus 17 G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~L-----------E~P~~G~I~v~geei~~k~~~~G~l~~ad~ 85 (256)
T COG4598 17 GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFL-----------EKPSAGSIRVNGEEIRLKRDKDGQLKPADK 85 (256)
T ss_pred ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhh-----------cCCCCceEEECCeEEEeeeCCCCCeeeCCH
Confidence 356789999864 45999999999999999999988 77999999999986532
Q ss_pred --hhh-----hccCCCC-ccccchHhhHhhhhccccCCCC------------------CCCCCceeEecC----------
Q 017295 76 --LCQ-----LFKPKSA-VPAFLEIHDIAGLVRGAHEGQG------------------AFEDPDIIHVDD---------- 119 (374)
Q Consensus 76 --l~~-----~~~~~~~-~~~~~~v~D~~gl~~~~~~~~~------------------~~~~~~il~l~~---------- 119 (374)
+.. .++.|.. +..++++.+++--.+-.-.|.. .-.+....++++
T Consensus 86 ~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIAR 165 (256)
T COG4598 86 RQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIAR 165 (256)
T ss_pred HHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHH
Confidence 110 3445554 6667887776543211111110 111233445555
Q ss_pred --CCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCCC
Q 017295 120 --SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 187 (374)
Q Consensus 120 --~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~~ 187 (374)
+.+| ++.++|||++.+|++.+-..+..+..+++++.| |.+..+..++.+| .+|++|.+-..|++.
T Consensus 166 aLameP--~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v-~fLh~G~iEE~G~P~ 237 (256)
T COG4598 166 ALAMEP--EVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHV-IFLHQGKIEEEGPPE 237 (256)
T ss_pred HHhcCC--ceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhhe-EEeecceecccCChH
Confidence 6789 999999999999999999999999999988887 9999999999999 999999987666543
No 188
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.60 E-value=1.2e-16 Score=151.44 Aligned_cols=157 Identities=13% Similarity=0.104 Sum_probs=112.5
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh------h--hhcc
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------C--QLFK 81 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l------~--~~~~ 81 (374)
.+.+|+++++. ..++|+|+||||||||+++|+|. +.|++|.|.++|.++... . ..|.
T Consensus 22 ~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v 90 (280)
T PRK13633 22 EKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNAL-----------LIPSEGKVYVDGLDTSDEENLWDIRNKAGMV 90 (280)
T ss_pred CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEeccccccHHHHhhheEEE
Confidence 35699999874 55999999999999999999999 889999999999876421 1 1456
Q ss_pred CCCC--ccccchHhhHhhhhccccCCCC-----------------CCCCCceeEecC------------CCCCchhHHHH
Q 017295 82 PKSA--VPAFLEIHDIAGLVRGAHEGQG-----------------AFEDPDIIHVDD------------SVDPVRDLEVI 130 (374)
Q Consensus 82 ~~~~--~~~~~~v~D~~gl~~~~~~~~~-----------------~~~~~~il~l~~------------~~dP~~~l~il 130 (374)
+|.. .....++.|+..+......... .+.+..+..+++ +.+| +++++
T Consensus 91 ~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p--~llll 168 (280)
T PRK13633 91 FQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRP--ECIIF 168 (280)
T ss_pred ecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCC--CEEEE
Confidence 6653 1222456666654321110000 111222233333 5789 99999
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 131 SAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 131 de~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
|||++++|+.....+++.+.++.++ +.+ |++..+.. ||++ .+|++|+++..++
T Consensus 169 DEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v-~~l~~G~i~~~g~ 227 (280)
T PRK13633 169 DEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRI-IVMDSGKVVMEGT 227 (280)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEE-EEEECCEEEEecC
Confidence 9999999999999999999887654 444 99998875 9999 9999999887664
No 189
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.60 E-value=1.2e-16 Score=141.70 Aligned_cols=142 Identities=22% Similarity=0.374 Sum_probs=99.1
Q ss_pred ccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhh-------hccCC
Q 017295 15 RPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPK 83 (374)
Q Consensus 15 ~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~-------~~~~~ 83 (374)
+.+|+++++. ..++|+|+||||||||+++|+|. ..|+.|.|.++|.++..... .|.+|
T Consensus 12 ~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~-----------~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q 80 (180)
T cd03214 12 RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGL-----------LKPSSGEILLDGKDLASLSPKELARKIAYVPQ 80 (180)
T ss_pred eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEECCcCCHHHHHHHHhHHHH
Confidence 4688888764 56999999999999999999999 78999999999976532110 12221
Q ss_pred CCccccchHhhHhhhhc-------cccCCCCCCCCCceeEecCCCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHc-
Q 017295 84 SAVPAFLEIHDIAGLVR-------GAHEGQGAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKR- 155 (374)
Q Consensus 84 ~~~~~~~~v~D~~gl~~-------~~~~~~~~~~~~~il~l~~~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~- 155 (374)
+.+..++.. ..|.|+. ....+...-+.+| +++++|||+.++|........+.+.+..++
T Consensus 81 --------~l~~~gl~~~~~~~~~~LS~G~~---qrl~laral~~~p--~llllDEP~~~LD~~~~~~~~~~l~~~~~~~ 147 (180)
T cd03214 81 --------ALELLGLAHLADRPFNELSGGER---QRVLLARALAQEP--PILLLDEPTSHLDIAHQIELLELLRRLARER 147 (180)
T ss_pred --------HHHHcCCHhHhcCCcccCCHHHH---HHHHHHHHHhcCC--CEEEEeCCccCCCHHHHHHHHHHHHHHHHhc
Confidence 233333321 1111111 0000000014578 999999999999999999999999887654
Q ss_pred cCc-----cchHHHHHHHHHHHHHHhCCCce
Q 017295 156 SND-----KQLKIEHELCQRVKAWLQDGKDV 181 (374)
Q Consensus 156 ~~~-----H~~~~~~~~~d~v~~~L~~G~iv 181 (374)
+.+ |+...+..+||++ .+|++|+++
T Consensus 148 ~~tiii~sh~~~~~~~~~d~~-~~l~~g~i~ 177 (180)
T cd03214 148 GKTVVMVLHDLNLAARYADRV-ILLKDGRIV 177 (180)
T ss_pred CCEEEEEeCCHHHHHHhCCEE-EEEECCEEE
Confidence 444 9999988999999 888888765
No 190
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.60 E-value=1.8e-16 Score=148.96 Aligned_cols=153 Identities=23% Similarity=0.323 Sum_probs=105.6
Q ss_pred ccccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCC-cc
Q 017295 13 AERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSA-VP 87 (374)
Q Consensus 13 ~~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~-~~ 87 (374)
..+.+|+++++ |..+||+|+||||||||+++|+|. ++|+.|.|.++|... +.++.. +.
T Consensus 35 ~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl-----------~~p~~G~I~~~g~~~------~~~~~~~~~ 97 (264)
T PRK13546 35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGS-----------LSPTVGKVDRNGEVS------VIAISAGLS 97 (264)
T ss_pred CceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------cCCCceEEEECCEEe------EEecccCCC
Confidence 45678998875 556999999999999999999999 789999999988521 111111 22
Q ss_pred ccchHhhHhhhhccccC-----------------CCCCCCCCceeEecC------------CCCCchhHHHHHHHHHhhc
Q 017295 88 AFLEIHDIAGLVRGAHE-----------------GQGAFEDPDIIHVDD------------SVDPVRDLEVISAELRLKD 138 (374)
Q Consensus 88 ~~~~v~D~~gl~~~~~~-----------------~~~~~~~~~il~l~~------------~~dP~~~l~ilde~l~~~D 138 (374)
..+++.+++.+...... +.....+..+..+++ +.+| +++++|||++++|
T Consensus 98 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p--~iLlLDEPt~gLD 175 (264)
T PRK13546 98 GQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNP--DILVIDEALSVGD 175 (264)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCC--CEEEEeCccccCC
Confidence 23445554432110000 000001111122222 5688 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 139 IEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 139 ~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+......++.+.+..+.+.+ |+...+..+||++ .+|++|+++..++
T Consensus 176 ~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i-~~l~~G~i~~~g~ 226 (264)
T PRK13546 176 QTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKI-AWIEGGKLKDYGE 226 (264)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEE-EEEECCEEEEeCC
Confidence 99999999998877655554 9999999999999 8999999886654
No 191
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.60 E-value=2.2e-16 Score=148.24 Aligned_cols=159 Identities=13% Similarity=0.148 Sum_probs=115.5
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCc---eeEEEeCCcchhhh----------
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN---EARVNIPDERFEWL---------- 76 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~---~G~i~~~g~~~~~l---------- 76 (374)
++.+|+++++. ..++|+|+||||||||+++|+|. ..|+ +|.|.++|.++...
T Consensus 16 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~-----------~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 84 (262)
T PRK09984 16 QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGL-----------ITGDKSAGSHIELLGRTVQREGRLARDIRKS 84 (262)
T ss_pred CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhcc-----------CCCCCCCceEEEECCEecccccccchhHHHH
Confidence 45688888764 46999999999999999999999 6665 49999999775321
Q ss_pred --hhhccCCCC-ccccchHhhHhhhhcccc--------C--CCC---------------CCCCCceeEecC---------
Q 017295 77 --CQLFKPKSA-VPAFLEIHDIAGLVRGAH--------E--GQG---------------AFEDPDIIHVDD--------- 119 (374)
Q Consensus 77 --~~~~~~~~~-~~~~~~v~D~~gl~~~~~--------~--~~~---------------~~~~~~il~l~~--------- 119 (374)
...|.+|.. +++.+++.+++.+..... . ... ...+..+..+++
T Consensus 85 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 164 (262)
T PRK09984 85 RANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIA 164 (262)
T ss_pred HhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHH
Confidence 124677765 555678888776432100 0 000 111122222332
Q ss_pred ---CCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 120 ---SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 120 ---~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
+.+| +++++|||+.++|......+.+.+.+..++ +.+ |+...+..+||++ .+|++|+++..++.
T Consensus 165 ral~~~p--~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i-~~l~~g~i~~~g~~ 237 (262)
T PRK09984 165 RALMQQA--KVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERI-VALRQGHVFYDGSS 237 (262)
T ss_pred HHHhcCC--CEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEeCCH
Confidence 5689 999999999999999999999999988654 444 9999999999999 88999998766554
No 192
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.59 E-value=1.2e-16 Score=150.53 Aligned_cols=157 Identities=13% Similarity=0.037 Sum_probs=108.7
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-------hhccCC
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPK 83 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-------~~~~~~ 83 (374)
+.+|+++++ |..++|+|+||||||||+++|+|. .+|++|.|.++|.++.... ..|.+|
T Consensus 22 ~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q 90 (269)
T PRK13648 22 SFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGI-----------EKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQ 90 (269)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCEECCcCCHHHHHhheeEEEe
Confidence 458888875 556999999999999999999999 8899999999998763211 135555
Q ss_pred CC--ccccchHhhHhhhhccccC-----------------CCCCCCCCceeEecC------------CCCCchhHHHHHH
Q 017295 84 SA--VPAFLEIHDIAGLVRGAHE-----------------GQGAFEDPDIIHVDD------------SVDPVRDLEVISA 132 (374)
Q Consensus 84 ~~--~~~~~~v~D~~gl~~~~~~-----------------~~~~~~~~~il~l~~------------~~dP~~~l~ilde 132 (374)
.. .+...++.++..+...... +...+.+..+..+++ ..+| +++++||
T Consensus 91 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p--~lllLDE 168 (269)
T PRK13648 91 NPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNP--SVIILDE 168 (269)
T ss_pred ChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCC--CEEEEeC
Confidence 53 2333344444433211000 000111112222322 5689 9999999
Q ss_pred HHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 133 ELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 133 ~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
|++++|......+++.+.++.++ +.+ |+...+.. ||++ .+|++|+++..++.
T Consensus 169 Pt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i-~~l~~G~i~~~g~~ 226 (269)
T PRK13648 169 ATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHV-IVMNKGTVYKEGTP 226 (269)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEE-EEEECCEEEEecCH
Confidence 99999999999999999887654 444 99988875 9999 89999999866543
No 193
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.59 E-value=1.1e-16 Score=152.36 Aligned_cols=156 Identities=15% Similarity=0.074 Sum_probs=111.0
Q ss_pred cccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhh----------hh--hh
Q 017295 16 PILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW----------LC--QL 79 (374)
Q Consensus 16 ~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~----------l~--~~ 79 (374)
.+|+++++. ..+||+|+||||||||+++|+|. +.|++|.|.++|.++.. +. ..
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~ 93 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGL-----------IISETGQTIVGDYAIPANLKKIKEVKRLRKEIG 93 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCceEEECCEEccccccccccHHHHhccEE
Confidence 589988764 45999999999999999999999 78999999999876521 11 14
Q ss_pred ccCCCC--ccccchHhhHhhhhccccCCCC--------------CC----CCCceeEecC------------CCCCchhH
Q 017295 80 FKPKSA--VPAFLEIHDIAGLVRGAHEGQG--------------AF----EDPDIIHVDD------------SVDPVRDL 127 (374)
Q Consensus 80 ~~~~~~--~~~~~~v~D~~gl~~~~~~~~~--------------~~----~~~~il~l~~------------~~dP~~~l 127 (374)
|.+|.. .....++.++..+......... .+ .+..+..+++ +.+| ++
T Consensus 94 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p--~l 171 (289)
T PRK13645 94 LVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDG--NT 171 (289)
T ss_pred EEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCC--CE
Confidence 666653 1122466666654321100000 11 1111222222 5689 99
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 128 EVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 128 ~ilde~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+++|||++++|.......++.+.++.+. +.+ |++..+..+||++ .+|++|+++..++
T Consensus 172 LlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i-~~l~~G~i~~~g~ 234 (289)
T PRK13645 172 LVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEV-IVMHEGKVISIGS 234 (289)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 9999999999999999999999887653 444 9999999999999 9999999886654
No 194
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.59 E-value=2e-16 Score=145.80 Aligned_cols=154 Identities=18% Similarity=0.219 Sum_probs=109.4
Q ss_pred cccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-------hhccCCC
Q 017295 16 PILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKS 84 (374)
Q Consensus 16 ~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-------~~~~~~~ 84 (374)
.+|+++++ |..++|+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.+|.
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~ 84 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRF-----------YDVDSGRILIDGHDVRDYTLASLRRQIGLVSQD 84 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------ccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCC
Confidence 68888765 556999999999999999999999 7899999999997654211 1466666
Q ss_pred CccccchHhhHhhhhccccC-----------CCC----CC-------CCCceeEecC------------CCCCchhHHHH
Q 017295 85 AVPAFLEIHDIAGLVRGAHE-----------GQG----AF-------EDPDIIHVDD------------SVDPVRDLEVI 130 (374)
Q Consensus 85 ~~~~~~~v~D~~gl~~~~~~-----------~~~----~~-------~~~~il~l~~------------~~dP~~~l~il 130 (374)
......++.|+..+...... +.. .+ .+..+..+++ +.+| +++++
T Consensus 85 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p--~lllL 162 (234)
T cd03251 85 VFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDP--PILIL 162 (234)
T ss_pred CeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCC--CEEEE
Confidence 52223577777655321100 000 00 0111222222 5688 99999
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 131 SAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 131 de~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
|||++++|+.....+.+.+.+.. ++.+ |+...+.. ||++ .+|++|+++..++
T Consensus 163 DEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~-~d~v-~~l~~G~i~~~~~ 219 (234)
T cd03251 163 DEATSALDTESERLVQAALERLM-KNRTTFVIAHRLSTIEN-ADRI-VVLEDGKIVERGT 219 (234)
T ss_pred eCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHhh-CCEE-EEecCCeEeeeCC
Confidence 99999999999999999998775 4443 99988865 9999 9999999876543
No 195
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.59 E-value=2.4e-16 Score=147.11 Aligned_cols=161 Identities=14% Similarity=0.129 Sum_probs=111.3
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhh-------hh--hhc
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLF 80 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~-------l~--~~~ 80 (374)
++.+|+++++. ..+||+|+||||||||+++|+|... .+| ..|++|.|.++|.++.. .. ..|
T Consensus 18 ~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~---~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~ 91 (253)
T PRK14242 18 DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMND---LIP---GARVEGEILLDGENIYDPHVDVVELRRRVGM 91 (253)
T ss_pred CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcc---cCC---CCCCceEEEECCEEccccccCHHHHhhcEEE
Confidence 34689988864 4599999999999999999999821 000 01589999999977632 11 246
Q ss_pred cCCCC-ccccchHhhHhhhhccccC--CC-----C--------CC-------CCCceeEecC------------CCCCch
Q 017295 81 KPKSA-VPAFLEIHDIAGLVRGAHE--GQ-----G--------AF-------EDPDIIHVDD------------SVDPVR 125 (374)
Q Consensus 81 ~~~~~-~~~~~~v~D~~gl~~~~~~--~~-----~--------~~-------~~~~il~l~~------------~~dP~~ 125 (374)
.+|.. ++. .++.|++.+...... .. . .+ .+.....+++ +.+|
T Consensus 92 v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p-- 168 (253)
T PRK14242 92 VFQKPNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEP-- 168 (253)
T ss_pred EecCCCCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCC--
Confidence 67765 333 477777755321110 00 0 01 0111222332 5689
Q ss_pred hHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 126 DLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 126 ~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+++++|||++++|........+.+.+.. ++.+ |++..+..+||++ .+|++|+++..+.
T Consensus 169 ~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~tH~~~~~~~~~d~v-~~l~~G~i~~~g~ 231 (253)
T PRK14242 169 EVLLMDEPASALDPIATQKIEELIHELK-ARYTIIIVTHNMQQAARVSDVT-AFFYMGKLIEVGP 231 (253)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCeEEEEEecHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 9999999999999999999999998875 3444 9999999999999 8999999876553
No 196
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.59 E-value=2.6e-16 Score=146.89 Aligned_cols=156 Identities=16% Similarity=0.098 Sum_probs=112.6
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCC-----ceeEEEeCCcchh--h-----hh-
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP-----NEARVNIPDERFE--W-----LC- 77 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p-----~~G~i~~~g~~~~--~-----l~- 77 (374)
+.+|+++++ |..+||+|+||||||||+++|+|. +.| ++|.|.++|.++. . ..
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-----------~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~ 85 (253)
T PRK14267 17 NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRL-----------LELNEEARVEGEVRLFGRNIYSPDVDPIEVRR 85 (253)
T ss_pred eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------CCcccCCCCceEEEECCEEccccccChHHHhh
Confidence 468998775 456999999999999999999999 555 5999999997763 1 11
Q ss_pred -hhccCCCC-ccccchHhhHhhhhccccCC--CC--------------CC-------CCCceeEecC------------C
Q 017295 78 -QLFKPKSA-VPAFLEIHDIAGLVRGAHEG--QG--------------AF-------EDPDIIHVDD------------S 120 (374)
Q Consensus 78 -~~~~~~~~-~~~~~~v~D~~gl~~~~~~~--~~--------------~~-------~~~~il~l~~------------~ 120 (374)
..|.+|.. ++..+++.+++.+....... .. .+ .+.....+++ +
T Consensus 86 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 165 (253)
T PRK14267 86 EVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALA 165 (253)
T ss_pred ceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHh
Confidence 14667765 55567787777653211100 00 00 0111122222 5
Q ss_pred CCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 121 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 121 ~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
.+| +++++|||+.++|+.......+.+.+..+ +.+ |++..+..+||++ .+|++|+++..++
T Consensus 166 ~~p--~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i-~~l~~G~i~~~~~ 231 (253)
T PRK14267 166 MKP--KILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPAQAARVSDYV-AFLYLGKLIEVGP 231 (253)
T ss_pred cCC--CEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHHHhhCCEE-EEEECCEEEEeCC
Confidence 689 99999999999999999999999988764 444 9999999999999 8999999886654
No 197
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.59 E-value=2.8e-16 Score=145.15 Aligned_cols=155 Identities=17% Similarity=0.238 Sum_probs=112.8
Q ss_pred ccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-----hhccCCCC-c
Q 017295 17 ILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKSA-V 86 (374)
Q Consensus 17 vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-----~~~~~~~~-~ 86 (374)
+|+++++ |..+||+|+||||||||+++|+|. .+|+.|.|.++|.++.... ..|.+|.. +
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~-----------~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~ 82 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGF-----------IKPDSGKILLNGKDITNLPPEKRDISYVPQNYAL 82 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------cCCCceEEEECCEEcCcCChhHcCEEEEeecCcc
Confidence 6887775 456999999999999999999999 8899999999997764311 24566664 4
Q ss_pred cccchHhhHhhhhccccCCC-C----------------CCCCCceeEecC------------CCCCchhHHHHHHHHHhh
Q 017295 87 PAFLEIHDIAGLVRGAHEGQ-G----------------AFEDPDIIHVDD------------SVDPVRDLEVISAELRLK 137 (374)
Q Consensus 87 ~~~~~v~D~~gl~~~~~~~~-~----------------~~~~~~il~l~~------------~~dP~~~l~ilde~l~~~ 137 (374)
+...++.|++.+........ . .+.+..+-.+++ ..+| +++++|||+.++
T Consensus 83 ~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p--~llllDEPt~gL 160 (235)
T cd03299 83 FPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNP--KILLLDEPFSAL 160 (235)
T ss_pred CCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCC--CEEEECCCcccC
Confidence 55567777776532111000 0 001112222332 5688 999999999999
Q ss_pred cHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 138 DIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 138 D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
|.......++.+.+...+ +.+ |++..+..+||++ .+|++|+++..++
T Consensus 161 D~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i-~~l~~G~i~~~~~ 213 (235)
T cd03299 161 DVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKV-AIMLNGKLIQVGK 213 (235)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEE-EEEECCEEEEecC
Confidence 999999999999887644 444 9999999999999 8899999876543
No 198
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.59 E-value=3.5e-16 Score=145.78 Aligned_cols=156 Identities=15% Similarity=0.208 Sum_probs=110.0
Q ss_pred ccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-------hhccCCCC
Q 017295 17 ILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSA 85 (374)
Q Consensus 17 vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-------~~~~~~~~ 85 (374)
+|+++++ |..+||+|+||||||||+++|+|. .+ .+|.|.++|.++.... ..|.+|..
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl-----------~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~ 78 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGL-----------LP-GSGSIQFAGQPLEAWSAAELARHRAYLSQQQ 78 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCC-----------CC-CCeEEEECCEecCcCCHHHHhhheEEecccC
Confidence 5777765 556999999999999999999998 53 4899999998653211 24667764
Q ss_pred -ccccchHhhHhhhhccccCCCC-------------CC---CCCceeEecC------------CC-----CCchhHHHHH
Q 017295 86 -VPAFLEIHDIAGLVRGAHEGQG-------------AF---EDPDIIHVDD------------SV-----DPVRDLEVIS 131 (374)
Q Consensus 86 -~~~~~~v~D~~gl~~~~~~~~~-------------~~---~~~~il~l~~------------~~-----dP~~~l~ild 131 (374)
.+..+++.+++.+......... .+ .+..+-.+++ +. +|..+++++|
T Consensus 79 ~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 79 TPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred ccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 4555677777765421110000 01 1112222332 22 1223999999
Q ss_pred HHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 132 AELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 132 e~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
||+.++|+.....+.+.+.+..+++.+ |++..+..+||++ .+|++|+++..++
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i-~~l~~G~i~~~g~ 216 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRV-WLLKQGKLLASGR 216 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 999999999999999999887655544 9999999999999 9999999987654
No 199
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.59 E-value=1.7e-16 Score=153.48 Aligned_cols=157 Identities=15% Similarity=0.177 Sum_probs=111.6
Q ss_pred ccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccC----CceeEEEeCCcchhhhh---------
Q 017295 15 RPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE----PNEARVNIPDERFEWLC--------- 77 (374)
Q Consensus 15 ~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~----p~~G~i~~~g~~~~~l~--------- 77 (374)
..+|+++++. ..+||||+||||||||+++|+|+ ++ |++|.|.++|.++..+.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gl-----------l~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~ 88 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGL-----------IDYPGRVMAEKLEFNGQDLQRISEKERRNLVG 88 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcC-----------CCCCCCCcceEEEECCEECCcCCHHHHHHHhC
Confidence 4689999875 45999999999999999999998 44 58999999998764321
Q ss_pred --hhccCCCC---ccccchHhhHhhhhccccCCCC---------------CCC------CCceeEecC------------
Q 017295 78 --QLFKPKSA---VPAFLEIHDIAGLVRGAHEGQG---------------AFE------DPDIIHVDD------------ 119 (374)
Q Consensus 78 --~~~~~~~~---~~~~~~v~D~~gl~~~~~~~~~---------------~~~------~~~il~l~~------------ 119 (374)
..|.+|.. +.+.+++.+++......+.+.. .+. +.....+++
T Consensus 89 ~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL 168 (326)
T PRK11022 89 AEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAI 168 (326)
T ss_pred CCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHH
Confidence 24566653 4444555443321110000000 111 111222333
Q ss_pred CCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 120 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 120 ~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+.+| +++++|||+.++|......+++.+.++.++ +.+ |++..+..+||+| .+|.+|+++..++
T Consensus 169 ~~~P--~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri-~vm~~G~ive~g~ 237 (326)
T PRK11022 169 ACRP--KLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKI-IVMYAGQVVETGK 237 (326)
T ss_pred HhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 5789 999999999999999999999999988754 443 9999999999999 9999999987764
No 200
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.59 E-value=1.5e-16 Score=138.70 Aligned_cols=162 Identities=17% Similarity=0.149 Sum_probs=118.8
Q ss_pred ccccccccccCCc----eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCC-cchhhhhh--------h
Q 017295 13 AERPILGRFSSHL----KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD-ERFEWLCQ--------L 79 (374)
Q Consensus 13 ~~~~vL~~i~~~~----~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g-~~~~~l~~--------~ 79 (374)
++..+|+++++.+ --+|||||||||||++.+|+|. ..|+.|.+.+.| .++..+.. +
T Consensus 16 ~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGK-----------trp~~G~v~f~g~~dl~~~~e~~IAr~GIG 84 (249)
T COG4674 16 GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGK-----------TRPQEGEVLFDGDTDLTKLPEHRIARAGIG 84 (249)
T ss_pred cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeeccc-----------CCCCcceEEEcCchhhccCCHHHHHHhccC
Confidence 4667888887644 4899999999999999999999 789999999998 66654433 2
Q ss_pred ccCCCC-ccccchHhhHhhhhccccCCCC----------------------CC---CCC------------ceeEecCCC
Q 017295 80 FKPKSA-VPAFLEIHDIAGLVRGAHEGQG----------------------AF---EDP------------DIIHVDDSV 121 (374)
Q Consensus 80 ~~~~~~-~~~~~~v~D~~gl~~~~~~~~~----------------------~~---~~~------------~il~l~~~~ 121 (374)
-..|+. ++..+++.|++.+....+++.. .+ .+. .-+-+.-+.
T Consensus 85 RKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q 164 (249)
T COG4674 85 RKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQ 164 (249)
T ss_pred ccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeecc
Confidence 345555 7778899999888654433311 00 000 000011157
Q ss_pred CCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc----cchHHHHHHHHHHHHHHhCCCceeccCCCh
Q 017295 122 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND----KQLKIEHELCQRVKAWLQDGKDVRLGDWKA 188 (374)
Q Consensus 122 dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~----H~~~~~~~~~d~v~~~L~~G~iv~~~~~~~ 188 (374)
+| +++++|||.++.--...++.-+.+..++.+... ||+..+.+++++| .+|++|.+...|++++
T Consensus 165 ~P--~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~V-TVlh~G~VL~EGsld~ 232 (249)
T COG4674 165 DP--KLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKV-TVLHEGSVLAEGSLDE 232 (249)
T ss_pred CC--cEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhhee-EEEeccceeecccHHH
Confidence 89 999999999998777777777778777643322 9999999999999 9999999998887653
No 201
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.59 E-value=9.7e-15 Score=136.75 Aligned_cols=58 Identities=31% Similarity=0.444 Sum_probs=53.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhh
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~ 99 (374)
.++.+-|.||+|||||+++||+.++++++|||||...+.|.+...+.+ ++++||||+.
T Consensus 169 pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R-----------------~QvIDTPGlL 226 (346)
T COG1084 169 PTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLR-----------------IQVIDTPGLL 226 (346)
T ss_pred CeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCce-----------------EEEecCCccc
Confidence 348999999999999999999999999999999999999999887655 8999999994
No 202
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.59 E-value=1.6e-16 Score=153.72 Aligned_cols=143 Identities=13% Similarity=0.220 Sum_probs=107.6
Q ss_pred EEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-----hhccCCCC-ccccchHhhHhhhhccc
Q 017295 29 IVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKSA-VPAFLEIHDIAGLVRGA 102 (374)
Q Consensus 29 LvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-----~~~~~~~~-~~~~~~v~D~~gl~~~~ 102 (374)
|+|+||||||||+++|+|. .+|++|.|.++|.++.... ..|.+|.. +++.+++.+++.+....
T Consensus 1 l~G~nGsGKSTLl~~iaGl-----------~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~ 69 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGF-----------EQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKM 69 (325)
T ss_pred CcCCCCCCHHHHHHHHHCC-----------CCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhh
Confidence 6899999999999999999 8899999999998764321 24667775 66678899888764321
Q ss_pred cCCC------C-----------CCCCCceeEecC------------CCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q 017295 103 HEGQ------G-----------AFEDPDIIHVDD------------SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSM 153 (374)
Q Consensus 103 ~~~~------~-----------~~~~~~il~l~~------------~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~ 153 (374)
.... . .+.+..+..+++ +.+| +++++|||++++|......+++.+.++.
T Consensus 70 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p--~lllLDEP~s~LD~~~~~~l~~~l~~l~ 147 (325)
T TIGR01187 70 RKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKP--KILLLDEPLSALDKKLRDQMQLELKTIQ 147 (325)
T ss_pred cCCCHHHHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCC--CEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 1000 0 111222222333 5689 9999999999999999999999998876
Q ss_pred Hc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 154 KR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 154 ~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
++ +.+ |++.++..+||++ .+|++|+++..++
T Consensus 148 ~~~g~tiiivTHd~~e~~~~~d~i-~vl~~G~i~~~g~ 184 (325)
T TIGR01187 148 EQLGITFVFVTHDQEEAMTMSDRI-AIMRKGKIAQIGT 184 (325)
T ss_pred HhcCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEEcC
Confidence 54 444 9999999999999 9999999886654
No 203
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.59 E-value=3.2e-16 Score=146.78 Aligned_cols=158 Identities=20% Similarity=0.210 Sum_probs=108.8
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcc-----hhhh--------
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER-----FEWL-------- 76 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~-----~~~l-------- 76 (374)
++.+|+++++ |..+||+|+||||||||+++|+|. ++|++|.|.++|.+ +...
T Consensus 18 ~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~ 86 (258)
T PRK11701 18 PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSAR-----------LAPDAGEVHYRMRDGQLRDLYALSEAERRRL 86 (258)
T ss_pred CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCEEEECCccccccccccCCHHHHHHH
Confidence 3568888765 556999999999999999999999 88999999999976 4321
Q ss_pred ---hhhccCCCC---ccccchHhhHhhhhc---cc-cCCC---C--------CC----CCCceeEecC------------
Q 017295 77 ---CQLFKPKSA---VPAFLEIHDIAGLVR---GA-HEGQ---G--------AF----EDPDIIHVDD------------ 119 (374)
Q Consensus 77 ---~~~~~~~~~---~~~~~~v~D~~gl~~---~~-~~~~---~--------~~----~~~~il~l~~------------ 119 (374)
...|.+|.. +...+++.+++.... .. ..+. . .+ .+.....+++
T Consensus 87 ~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral 166 (258)
T PRK11701 87 LRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNL 166 (258)
T ss_pred hhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHH
Confidence 123556553 222333333332110 00 0000 0 01 1111222332
Q ss_pred CCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 120 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 120 ~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+.+| +++++|||++++|.......++.+.+..++ +.+ |+...+..+||++ .+|++|+++..++
T Consensus 167 ~~~p--~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i-~~l~~g~i~~~~~ 235 (258)
T PRK11701 167 VTHP--RLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRL-LVMKQGRVVESGL 235 (258)
T ss_pred hcCC--CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEE-EEEECCEEEEeCC
Confidence 5689 999999999999999999999999887654 443 9999999999999 9999999886654
No 204
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=3.5e-16 Score=145.54 Aligned_cols=159 Identities=12% Similarity=0.137 Sum_probs=112.8
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh-----h--hhccC
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C--QLFKP 82 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l-----~--~~~~~ 82 (374)
++.+|+++++. ..+||+|+||||||||+++|+|.... ..|++|.|.++|.++... . ..|.+
T Consensus 14 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--------~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~ 85 (246)
T PRK14269 14 KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDK--------IAKIDGLVEIEGKDVKNQDVVALRKNVGMVF 85 (246)
T ss_pred CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--------CCCCceEEEECCEecccCCHHHHhhhEEEEe
Confidence 35688888764 56999999999999999999998210 136899999999876421 1 24667
Q ss_pred CCC-ccccchHhhHhhhhccccC----CCC------------CC-------CCCceeEecC------------CCCCchh
Q 017295 83 KSA-VPAFLEIHDIAGLVRGAHE----GQG------------AF-------EDPDIIHVDD------------SVDPVRD 126 (374)
Q Consensus 83 ~~~-~~~~~~v~D~~gl~~~~~~----~~~------------~~-------~~~~il~l~~------------~~dP~~~ 126 (374)
|.. ++. .++.|++.+....+. ... .+ .+.....+++ +.+| +
T Consensus 86 q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p--~ 162 (246)
T PRK14269 86 QQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKP--K 162 (246)
T ss_pred cCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCC--C
Confidence 765 333 578887755321110 000 11 0111222332 5789 9
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 127 LEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 127 l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
++++|||+.++|+.......+.+.+.. .+.+ |++..+..+||++ .+|++|+++..++
T Consensus 163 lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~~~~~~~d~i-~~l~~G~i~~~g~ 224 (246)
T PRK14269 163 LLLLDEPTSALDPISSGVIEELLKELS-HNLSMIMVTHNMQQGKRVADYT-AFFHLGELIEFGE 224 (246)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHhhCcEE-EEEECCEEEEECC
Confidence 999999999999999999999888775 3444 9999999999999 8999999986653
No 205
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=3.5e-16 Score=146.13 Aligned_cols=156 Identities=14% Similarity=0.147 Sum_probs=112.1
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCC-----ceeEEEeCCcchhh-------hh
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP-----NEARVNIPDERFEW-------LC 77 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p-----~~G~i~~~g~~~~~-------l~ 77 (374)
++.+|+++++ |..++|+|+||||||||+++|+|. .+| ++|.|.++|.++.. ..
T Consensus 19 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 87 (254)
T PRK14273 19 DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRM-----------NDLVEGIKIEGNVIYEGKNIYSNNFDILELR 87 (254)
T ss_pred CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------ccCCcCCCCceEEEECCEecccccccHHHHh
Confidence 3568888875 456999999999999999999999 555 58999999976531 11
Q ss_pred --hhccCCCC-ccccchHhhHhhhhccccCCCC---------------CC-------CCCceeEecC------------C
Q 017295 78 --QLFKPKSA-VPAFLEIHDIAGLVRGAHEGQG---------------AF-------EDPDIIHVDD------------S 120 (374)
Q Consensus 78 --~~~~~~~~-~~~~~~v~D~~gl~~~~~~~~~---------------~~-------~~~~il~l~~------------~ 120 (374)
..|.+|.. ++ ..++.|++.+......... .+ .+...-.+++ +
T Consensus 88 ~~i~~v~q~~~~~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~ 166 (254)
T PRK14273 88 RKIGMVFQTPNPF-LMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLA 166 (254)
T ss_pred hceEEEeeccccc-cCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHH
Confidence 14667765 33 3788887765422111000 00 0111122222 5
Q ss_pred CCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 121 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 121 ~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
.+| +++++|||++++|.......++.+.++. ++.+ |++..+..+||++ .+|++|+++..++
T Consensus 167 ~~p--~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~~~~~~~d~i-~~l~~G~i~~~g~ 232 (254)
T PRK14273 167 IEP--NVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQQAGRISDRT-AFFLNGCIEEESS 232 (254)
T ss_pred cCC--CEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 689 9999999999999999999999998875 3444 9999999999999 8999999886654
No 206
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.58 E-value=4.5e-16 Score=159.37 Aligned_cols=159 Identities=14% Similarity=0.116 Sum_probs=116.3
Q ss_pred ccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccC-CceeEEEeCCcchhhh--------hhhcc
Q 017295 15 RPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE-PNEARVNIPDERFEWL--------CQLFK 81 (374)
Q Consensus 15 ~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~-p~~G~i~~~g~~~~~l--------~~~~~ 81 (374)
+.+|+++++. ..+||+|+||||||||+++|+|. ++ |++|.|.++|.++... ...|.
T Consensus 275 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl-----------~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v 343 (506)
T PRK13549 275 IKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGA-----------YPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMV 343 (506)
T ss_pred cccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCC-----------CCCCCCcEEEECCEECCCCCHHHHHHCCCEEe
Confidence 4688988764 45999999999999999999999 77 5999999998765311 12466
Q ss_pred CCCC----ccccchHhhHhhhhc--cccC----CC-----C--------CCC----CCceeEecC------------CCC
Q 017295 82 PKSA----VPAFLEIHDIAGLVR--GAHE----GQ-----G--------AFE----DPDIIHVDD------------SVD 122 (374)
Q Consensus 82 ~~~~----~~~~~~v~D~~gl~~--~~~~----~~-----~--------~~~----~~~il~l~~------------~~d 122 (374)
+|.. ++..+++.|++.+.. .... .. . .+. +..+-.+++ +.+
T Consensus 344 ~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~ 423 (506)
T PRK13549 344 PEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLN 423 (506)
T ss_pred CcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhC
Confidence 7662 455678877775431 1100 00 0 111 122233333 568
Q ss_pred CchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCCC
Q 017295 123 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 187 (374)
Q Consensus 123 P~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~~ 187 (374)
| +++++|||++++|+.....+++.+..+.+++.+ |++..+..+||++ .+|++|+++..++.+
T Consensus 424 p--~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v-~~l~~G~i~~~~~~~ 490 (506)
T PRK13549 424 P--KILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRV-LVMHEGKLKGDLINH 490 (506)
T ss_pred C--CEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEE-EEEECCEEEEEeccc
Confidence 9 999999999999999999999999888766554 9999999999999 899999988765443
No 207
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.58 E-value=4.1e-16 Score=147.25 Aligned_cols=158 Identities=17% Similarity=0.203 Sum_probs=108.2
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh----hhhccCCCC
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----CQLFKPKSA 85 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l----~~~~~~~~~ 85 (374)
++.+|+++++ |..+||+|+||||||||+++|+|. ++|++|.|.++|.++... ...|.+|..
T Consensus 19 ~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~ 87 (272)
T PRK15056 19 GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGF-----------VRLASGKISILGQPTRQALQKNLVAYVPQSE 87 (272)
T ss_pred CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEEhHHhhccceEEEecccc
Confidence 3568888875 456999999999999999999999 889999999999775321 123555553
Q ss_pred -cc--ccchHhhHhhhhccc-----c-CCC----C-----------CCCCCceeEecC------------CCCCchhHHH
Q 017295 86 -VP--AFLEIHDIAGLVRGA-----H-EGQ----G-----------AFEDPDIIHVDD------------SVDPVRDLEV 129 (374)
Q Consensus 86 -~~--~~~~v~D~~gl~~~~-----~-~~~----~-----------~~~~~~il~l~~------------~~dP~~~l~i 129 (374)
+. ....+.++..+.... . ... . ...+..+..+++ +.+| ++++
T Consensus 88 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p--~lll 165 (272)
T PRK15056 88 EVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQG--QVIL 165 (272)
T ss_pred ccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCC--CEEE
Confidence 11 112334433211000 0 000 0 111222223332 5688 9999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 130 ISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 130 lde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
+|||++++|+.....+.+.+.+..+++.+ |+...+..+||++ .++ +|+++..++.
T Consensus 166 lDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v-~~~-~G~i~~~g~~ 225 (272)
T PRK15056 166 LDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYT-VMV-KGTVLASGPT 225 (272)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE-EEE-CCEEEeecCH
Confidence 99999999999999999999887655544 9999999999998 666 7998766544
No 208
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.58 E-value=8.7e-16 Score=139.91 Aligned_cols=145 Identities=14% Similarity=0.172 Sum_probs=102.9
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh--h--hhccCCCC
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--C--QLFKPKSA 85 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l--~--~~~~~~~~ 85 (374)
++.+|+++++ |..++|+|+||||||||+++|+|. ..|++|.|.++|.++... . ..|.+|..
T Consensus 23 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~-----------~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~ 91 (214)
T PRK13543 23 EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGL-----------LHVESGQIQIDGKTATRGDRSRFMAYLGHLP 91 (214)
T ss_pred CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCC-----------CCCCCeeEEECCEEccchhhhhceEEeecCc
Confidence 4568888876 456999999999999999999999 789999999999765421 1 23556654
Q ss_pred -ccccchHhhHhhhhccccCCC--C---------C---CCCCceeEecC------------CCCCchhHHHHHHHHHhhc
Q 017295 86 -VPAFLEIHDIAGLVRGAHEGQ--G---------A---FEDPDIIHVDD------------SVDPVRDLEVISAELRLKD 138 (374)
Q Consensus 86 -~~~~~~v~D~~gl~~~~~~~~--~---------~---~~~~~il~l~~------------~~dP~~~l~ilde~l~~~D 138 (374)
++..+++.|+..+........ . . ..+..+..+++ +.+| +++++|||++++|
T Consensus 92 ~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p--~llllDEPt~~LD 169 (214)
T PRK13543 92 GLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPA--PLWLLDEPYANLD 169 (214)
T ss_pred ccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCC--CEEEEeCCcccCC
Confidence 455567777764432111000 0 0 01112222222 5689 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHH
Q 017295 139 IEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRV 171 (374)
Q Consensus 139 ~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v 171 (374)
+...+...+.+.+..+++.+ |+...+..+|+++
T Consensus 170 ~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i 207 (214)
T PRK13543 170 LEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRM 207 (214)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceE
Confidence 99999999998877655554 9999988888876
No 209
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.58 E-value=3e-16 Score=164.36 Aligned_cols=157 Identities=16% Similarity=0.175 Sum_probs=116.2
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh----------hhhc
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----------CQLF 80 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l----------~~~~ 80 (374)
+.+|+++++ |..+||+|+||||||||+++|+|+ .+|++|.|.++|.++..+ ...|
T Consensus 337 ~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl-----------~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~ 405 (623)
T PRK10261 337 VHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRL-----------VESQGGEIIFNGQRIDTLSPGKLQALRRDIQF 405 (623)
T ss_pred eEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcC-----------CCCCCcEEEECCEECCcCCHHHHHHhcCCeEE
Confidence 468888886 455999999999999999999999 789999999999765321 1146
Q ss_pred cCCCC---ccccchHhhHhhhhccccC---CC----C--------CC----CCCceeEecC------------CCCCchh
Q 017295 81 KPKSA---VPAFLEIHDIAGLVRGAHE---GQ----G--------AF----EDPDIIHVDD------------SVDPVRD 126 (374)
Q Consensus 81 ~~~~~---~~~~~~v~D~~gl~~~~~~---~~----~--------~~----~~~~il~l~~------------~~dP~~~ 126 (374)
.+|.. +++.+++.+++.+....+. .. . .+ .+..+-.+++ +.+| +
T Consensus 406 v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p--~ 483 (623)
T PRK10261 406 IFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNP--K 483 (623)
T ss_pred EecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCC--C
Confidence 66663 5556777777654221110 00 0 11 1122233333 5789 9
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 127 LEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 127 l~ilde~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
++++|||++++|+.....+++.+.++.++ +.+ |++..+..+||++ .+|.+|+++..++
T Consensus 484 llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri-~vl~~G~iv~~g~ 547 (623)
T PRK10261 484 VIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRV-AVMYLGQIVEIGP 547 (623)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEecC
Confidence 99999999999999999999999888754 444 9999999999999 9999999986654
No 210
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.58 E-value=3.7e-16 Score=146.52 Aligned_cols=156 Identities=15% Similarity=0.140 Sum_probs=111.7
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccC-----CceeEEEeCCcchhh-------hh
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE-----PNEARVNIPDERFEW-------LC 77 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~-----p~~G~i~~~g~~~~~-------l~ 77 (374)
++.+|+++++. ..++|+|+||||||||+++|+|. .. |++|.|.++|.++.. +.
T Consensus 25 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~ 93 (260)
T PRK10744 25 KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRM-----------YELYPEQRAEGEILLDGENILTPKQDIALLR 93 (260)
T ss_pred CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------cccCCCCCcceEEEECCEEccccccchHHHh
Confidence 34689988865 45999999999999999999998 43 579999999977531 11
Q ss_pred --hhccCCCC-ccccchHhhHhhhhccccCCCC---------------CC-------CCCceeEecC------------C
Q 017295 78 --QLFKPKSA-VPAFLEIHDIAGLVRGAHEGQG---------------AF-------EDPDIIHVDD------------S 120 (374)
Q Consensus 78 --~~~~~~~~-~~~~~~v~D~~gl~~~~~~~~~---------------~~-------~~~~il~l~~------------~ 120 (374)
..|.+|.. ++. .++.|++.+......+.. .+ .+.....+++ +
T Consensus 94 ~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~ 172 (260)
T PRK10744 94 AKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIA 172 (260)
T ss_pred cceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence 13666664 333 677777765322110000 11 0111222332 5
Q ss_pred CCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 121 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 121 ~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
.+| +++++|||++++|........+.+.+.. ++.+ |+...+..+||++ .+|++|+++..++
T Consensus 173 ~~p--~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~~~~~~~d~i-~~l~~G~i~~~g~ 238 (260)
T PRK10744 173 IRP--EVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQQAARCSDYT-AFMYLGELIEFGN 238 (260)
T ss_pred CCC--CEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 789 9999999999999999999999998875 3443 9999999999999 8999999886654
No 211
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.58 E-value=3.8e-16 Score=147.19 Aligned_cols=158 Identities=19% Similarity=0.265 Sum_probs=111.7
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh--------h--hh
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------C--QL 79 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l--------~--~~ 79 (374)
++.+|+++++. ..++|+|+||||||||+++|+|. ..|++|.|.++|.++... . ..
T Consensus 24 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~ 92 (268)
T PRK10419 24 HQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGL-----------ESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQ 92 (268)
T ss_pred ceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEeccccChhHHHHHHhcEE
Confidence 36789998865 46999999999999999999999 789999999999865321 1 13
Q ss_pred ccCCCC---ccccchHhhHhhhhccc----cCCC---C--------CC----CCCceeEecC------------CCCCch
Q 017295 80 FKPKSA---VPAFLEIHDIAGLVRGA----HEGQ---G--------AF----EDPDIIHVDD------------SVDPVR 125 (374)
Q Consensus 80 ~~~~~~---~~~~~~v~D~~gl~~~~----~~~~---~--------~~----~~~~il~l~~------------~~dP~~ 125 (374)
|.+|.. ++...++.++..+.... .... . .+ .+.....+++ +.+|
T Consensus 93 ~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p-- 170 (268)
T PRK10419 93 MVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEP-- 170 (268)
T ss_pred EEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCC--
Confidence 556653 33445555554321100 0000 0 11 1112222332 5789
Q ss_pred hHHHHHHHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 126 DLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 126 ~l~ilde~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+++++|||++++|........+.+.+..++ +.+ |+...+..+||++ .+|++|+++..++
T Consensus 171 ~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i-~~l~~G~i~~~g~ 235 (268)
T PRK10419 171 KLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRV-MVMDNGQIVETQP 235 (268)
T ss_pred CEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEE-EEEECCEEeeeCC
Confidence 999999999999999999999999887654 444 9999999999999 8899999876654
No 212
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=4e-16 Score=146.93 Aligned_cols=161 Identities=12% Similarity=0.125 Sum_probs=110.7
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhh-------hh--hhc
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLF 80 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~-------l~--~~~ 80 (374)
++.+|+++++ |..+||+|+||||||||+++|+|.... .| ..|++|.|.++|.++.. .. ..|
T Consensus 33 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~---~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~ 106 (268)
T PRK14248 33 EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDL---IP---SARSEGEILYEGLNILDSNINVVNLRREIGM 106 (268)
T ss_pred CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccc---cC---CCCCceEEEECCEEcccccccHHHHhccEEE
Confidence 4568888875 456999999999999999999997100 00 02689999999977532 11 146
Q ss_pred cCCCC-ccccchHhhHhhhhccccCC--CC-------------CC-------CCCceeEecC------------CCCCch
Q 017295 81 KPKSA-VPAFLEIHDIAGLVRGAHEG--QG-------------AF-------EDPDIIHVDD------------SVDPVR 125 (374)
Q Consensus 81 ~~~~~-~~~~~~v~D~~gl~~~~~~~--~~-------------~~-------~~~~il~l~~------------~~dP~~ 125 (374)
.+|.. ++. .++.|+..+....... .. .+ .+..+..+++ +.+|
T Consensus 107 v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p-- 183 (268)
T PRK14248 107 VFQKPNPFP-KSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKP-- 183 (268)
T ss_pred EecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCC--
Confidence 67665 333 3677766543111000 00 01 0111222222 5789
Q ss_pred hHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 126 DLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 126 ~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+++++|||++++|........+.+.++.+ +.+ |++..+..+||++ .+|++|+++..++
T Consensus 184 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~~d~v-~~l~~G~i~~~~~ 246 (268)
T PRK14248 184 AVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQQALRVSDRT-AFFLNGDLVEYDQ 246 (268)
T ss_pred CEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 99999999999999999999999988753 344 9999999999999 8999999886654
No 213
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.58 E-value=4.6e-16 Score=159.13 Aligned_cols=157 Identities=13% Similarity=0.136 Sum_probs=116.2
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh------h--hhcc
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------C--QLFK 81 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l------~--~~~~ 81 (374)
++.+|+++++. ..+||+|+||||||||+++|+|. ..|++|.|.++|.++... . ..|.
T Consensus 16 ~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v 84 (501)
T PRK11288 16 GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGN-----------YQPDAGSILIDGQEMRFASTTAALAAGVAII 84 (501)
T ss_pred CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCEEEECCEECCCCCHHHHHhCCEEEE
Confidence 34689988865 45999999999999999999999 789999999999765321 1 2466
Q ss_pred CCCC-ccccchHhhHhhhhccc-cCC-C-------C--------CC---CCCceeEecC------------CCCCchhHH
Q 017295 82 PKSA-VPAFLEIHDIAGLVRGA-HEG-Q-------G--------AF---EDPDIIHVDD------------SVDPVRDLE 128 (374)
Q Consensus 82 ~~~~-~~~~~~v~D~~gl~~~~-~~~-~-------~--------~~---~~~~il~l~~------------~~dP~~~l~ 128 (374)
+|.. ++..+++.|++.+.... ..+ . . .+ .+..+..+++ ..+| +++
T Consensus 85 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p--~ll 162 (501)
T PRK11288 85 YQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNA--RVI 162 (501)
T ss_pred EechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCC--CEE
Confidence 7764 55567888877653210 001 0 0 11 1122223333 5689 999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceecc
Q 017295 129 VISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLG 184 (374)
Q Consensus 129 ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~ 184 (374)
++|||++++|+.....+.+.+.++.+++.+ |++..+..+||++ .+|++|+++..+
T Consensus 163 lLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i-~~l~~G~i~~~~ 222 (501)
T PRK11288 163 AFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAI-TVFKDGRYVATF 222 (501)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEeec
Confidence 999999999999999999999887655554 9999999999999 999999987543
No 214
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.58 E-value=1.5e-16 Score=146.97 Aligned_cols=155 Identities=18% Similarity=0.195 Sum_probs=110.6
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-------hhccCC
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPK 83 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-------~~~~~~ 83 (374)
+.+|+++++ |..++|+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.+|
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q 83 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF-----------YVPENGRVLVDGHDLALADPAWLRRQVGVVLQ 83 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------cCCCCCEEEECCeehHhcCHHHHhhcEEEEcC
Confidence 568888775 556999999999999999999999 7899999999998764321 246677
Q ss_pred CCccccchHhhHhhhhccccC--C-------CC------CC-------CCCceeEecC------------CCCCchhHHH
Q 017295 84 SAVPAFLEIHDIAGLVRGAHE--G-------QG------AF-------EDPDIIHVDD------------SVDPVRDLEV 129 (374)
Q Consensus 84 ~~~~~~~~v~D~~gl~~~~~~--~-------~~------~~-------~~~~il~l~~------------~~dP~~~l~i 129 (374)
.......++.|++.+...... . .+ .+ .+..+..+++ +.+| ++++
T Consensus 84 ~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p--~lll 161 (237)
T cd03252 84 ENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNP--RILI 161 (237)
T ss_pred CchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCC--CEEE
Confidence 652223577777655321000 0 00 00 0111222332 5688 9999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 130 ISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 130 lde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+|||++++|+.....+.+.+.+.. ++.+ |+...+. .||++ .+|++|+++..++
T Consensus 162 lDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~-~~d~v-~~l~~G~i~~~~~ 219 (237)
T cd03252 162 FDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLSTVK-NADRI-IVMEKGRIVEQGS 219 (237)
T ss_pred EeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHH-hCCEE-EEEECCEEEEEcC
Confidence 999999999999999999998875 4444 9998875 59999 8999999886654
No 215
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=3e-16 Score=146.99 Aligned_cols=156 Identities=15% Similarity=0.173 Sum_probs=111.6
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccC-----CceeEEEeCCcchhh-------hh
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE-----PNEARVNIPDERFEW-------LC 77 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~-----p~~G~i~~~g~~~~~-------l~ 77 (374)
++.+|+++++. ..+||+|+||||||||+++|+|. .+ |++|+|.++|.++.. ..
T Consensus 24 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl-----------~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 92 (258)
T PRK14268 24 EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRM-----------NDLIKNCRIEGKVSIEGEDIYEPDVDVVELR 92 (258)
T ss_pred CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCcccCCCcceEEEECCEEcccccchHHHHh
Confidence 45688888764 56999999999999999999998 54 379999999876531 11
Q ss_pred --hhccCCCC-ccccchHhhHhhhhccccCCC------C------C--C-------CCCceeEecC------------CC
Q 017295 78 --QLFKPKSA-VPAFLEIHDIAGLVRGAHEGQ------G------A--F-------EDPDIIHVDD------------SV 121 (374)
Q Consensus 78 --~~~~~~~~-~~~~~~v~D~~gl~~~~~~~~------~------~--~-------~~~~il~l~~------------~~ 121 (374)
..|.+|.. ++. .++.+++.+........ . . + .+..+..+++ +.
T Consensus 93 ~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~ 171 (258)
T PRK14268 93 KNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAV 171 (258)
T ss_pred hhEEEEecCCccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 14667665 333 67777776532111000 0 0 1 0111222222 56
Q ss_pred CCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 122 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 122 dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+| +++++|||++++|.......++.+.++. ++.+ |++..+..+||++ .+|++|+++..++
T Consensus 172 ~p--~llllDEPt~~LD~~~~~~l~~~l~~l~-~~~tiiivsH~~~~~~~~~d~i-~~l~~G~i~~~~~ 236 (258)
T PRK14268 172 KP--KIILFDEPTSALDPISTARIEDLIMNLK-KDYTIVIVTHNMQQAARISDYT-GFFLMGELIEFGQ 236 (258)
T ss_pred CC--CEEEEeCCCcccCHHHHHHHHHHHHHHh-hCCEEEEEECCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 89 9999999999999999999999998875 3444 9999999999999 8999999886654
No 216
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.58 E-value=2.8e-16 Score=152.14 Aligned_cols=157 Identities=14% Similarity=0.190 Sum_probs=112.3
Q ss_pred ccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCc---eeEEEeCCcchhhhh----------
Q 017295 15 RPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN---EARVNIPDERFEWLC---------- 77 (374)
Q Consensus 15 ~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~---~G~i~~~g~~~~~l~---------- 77 (374)
..+|+++++. ..+||+|+||||||||+++|+|+ +.|+ +|.|.++|.++..+.
T Consensus 29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl-----------~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~ 97 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGL-----------LAANGRIGGSATFNGREILNLPEKELNKLRAE 97 (330)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcC-----------CCCCCCCCeEEEECCEECCcCCHHHHHHHhcC
Confidence 4688988864 45999999999999999999999 6664 999999998763211
Q ss_pred -hhccCCCC---ccccchHhhHhhhhccccCCCC---------------CCC------CCceeEecC------------C
Q 017295 78 -QLFKPKSA---VPAFLEIHDIAGLVRGAHEGQG---------------AFE------DPDIIHVDD------------S 120 (374)
Q Consensus 78 -~~~~~~~~---~~~~~~v~D~~gl~~~~~~~~~---------------~~~------~~~il~l~~------------~ 120 (374)
..|.+|.. +.+.+++.+++......+.+.. .+. +.....+++ +
T Consensus 98 ~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~ 177 (330)
T PRK09473 98 QISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALL 177 (330)
T ss_pred CEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHH
Confidence 24566653 4445555554322111111000 111 111222333 5
Q ss_pred CCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 121 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 121 ~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
.+| +++++|||+.++|......+++.+.++.++ +.+ |++..+..+||++ .+|.+|+++..++
T Consensus 178 ~~P--~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri-~vm~~G~ive~g~ 245 (330)
T PRK09473 178 CRP--KLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKV-LVMYAGRTMEYGN 245 (330)
T ss_pred cCC--CEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 789 999999999999999999999999888754 443 9999999999999 9999999998765
No 217
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.57 E-value=3.9e-16 Score=142.74 Aligned_cols=151 Identities=13% Similarity=0.119 Sum_probs=107.2
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh----------hhhc
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----------CQLF 80 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l----------~~~~ 80 (374)
+.+|+++++ |..++|+|+||||||||+++|+|. ..|++|.|.++|.++... ...|
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~ 86 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGL-----------RSVQEGSLKVLGQELYGASEKELVQLRRNIGY 86 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeEEEECCEEhHhcCHhHHHHHHhheEE
Confidence 578999775 456999999999999999999999 789999999999876421 1246
Q ss_pred cCCCC-ccccchHhhHhhhhccccCCCC---------------C---CCCCceeEecC------------CCCCchhHHH
Q 017295 81 KPKSA-VPAFLEIHDIAGLVRGAHEGQG---------------A---FEDPDIIHVDD------------SVDPVRDLEV 129 (374)
Q Consensus 81 ~~~~~-~~~~~~v~D~~gl~~~~~~~~~---------------~---~~~~~il~l~~------------~~dP~~~l~i 129 (374)
.+|.. ++...++.++..+......... . +.+..+..+++ +.+| ++++
T Consensus 87 ~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p--~ill 164 (220)
T TIGR02982 87 IFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRP--KLVL 164 (220)
T ss_pred EcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCC--CEEE
Confidence 66665 4455677776655332111100 0 01111122222 5689 9999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCc
Q 017295 130 ISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKD 180 (374)
Q Consensus 130 lde~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~i 180 (374)
+|||+.++|..........+.+..+. +.+ |+.. ...+||++ .+|++|++
T Consensus 165 lDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~-~~~~~d~v-~~l~~g~~ 219 (220)
T TIGR02982 165 ADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR-ILDVADRI-VHMEDGKL 219 (220)
T ss_pred EeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHhhCCEE-EEEECCEE
Confidence 99999999999999999999887653 444 9987 45789988 77777754
No 218
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.57 E-value=2.2e-16 Score=145.72 Aligned_cols=154 Identities=18% Similarity=0.176 Sum_probs=109.1
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-------hhccCC
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPK 83 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-------~~~~~~ 83 (374)
+.+|+++++ |..++|+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.+|
T Consensus 14 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl-----------~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q 82 (236)
T cd03253 14 RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRF-----------YDVSSGSILIDGQDIREVTLDSLRRAIGVVPQ 82 (236)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------cCCCCCEEEECCEEhhhCCHHHHHhhEEEECC
Confidence 458888775 456999999999999999999999 7899999999997764311 246666
Q ss_pred CCccccchHhhHhhhhccccC-----------CCC----C-------CCCCceeEecC------------CCCCchhHHH
Q 017295 84 SAVPAFLEIHDIAGLVRGAHE-----------GQG----A-------FEDPDIIHVDD------------SVDPVRDLEV 129 (374)
Q Consensus 84 ~~~~~~~~v~D~~gl~~~~~~-----------~~~----~-------~~~~~il~l~~------------~~dP~~~l~i 129 (374)
.......++.|++.+...... +.. . +.......+++ +.+| ++++
T Consensus 83 ~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p--~lll 160 (236)
T cd03253 83 DTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNP--PILL 160 (236)
T ss_pred CChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCC--CEEE
Confidence 652223577776654321100 000 0 00111223333 6789 9999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceecc
Q 017295 130 ISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLG 184 (374)
Q Consensus 130 lde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~ 184 (374)
+|||+.++|........+.+.+..+ +.+ |+...+.. ||++ .+|++|+++..+
T Consensus 161 lDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~-~d~~-~~l~~g~i~~~~ 217 (236)
T cd03253 161 LDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLSTIVN-ADKI-IVLKDGRIVERG 217 (236)
T ss_pred EeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHh-CCEE-EEEECCEEEeeC
Confidence 9999999999999999999987764 444 99888754 9999 889999887554
No 219
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.57 E-value=3.2e-16 Score=136.77 Aligned_cols=140 Identities=18% Similarity=0.173 Sum_probs=96.3
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccc
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFL 90 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~ 90 (374)
+.+|+++++ |..++|+|+||||||||+++|+|. .+|++|.|.++|.++.......
T Consensus 13 ~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~-----------~~~~~G~v~~~g~~~~~~~~~~---------- 71 (163)
T cd03216 13 VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGL-----------YKPDSGEILVDGKEVSFASPRD---------- 71 (163)
T ss_pred eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeEEEECCEECCcCCHHH----------
Confidence 468888765 566999999999999999999999 7899999999997654321000
Q ss_pred hHhhHhhhhccccCCCCCCCCCceeEecCCCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHH
Q 017295 91 EIHDIAGLVRGAHEGQGAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEH 165 (374)
Q Consensus 91 ~v~D~~gl~~~~~~~~~~~~~~~il~l~~~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~ 165 (374)
......++....|.|+. ....+...-..+| +++++|||+.++|........+.+.+..+++.+ |+...+.
T Consensus 72 ~~~~~i~~~~qLS~G~~---qrl~laral~~~p--~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 72 ARRAGIAMVYQLSVGER---QMVEIARALARNA--RLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred HHhcCeEEEEecCHHHH---HHHHHHHHHhcCC--CEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 00000111111222211 0000000003467 899999999999999999999999887655554 9999888
Q ss_pred HHHHHHHHHHhCCCce
Q 017295 166 ELCQRVKAWLQDGKDV 181 (374)
Q Consensus 166 ~~~d~v~~~L~~G~iv 181 (374)
.+||++ .+|++|+++
T Consensus 147 ~~~d~~-~~l~~g~i~ 161 (163)
T cd03216 147 EIADRV-TVLRDGRVV 161 (163)
T ss_pred HhCCEE-EEEECCEEE
Confidence 999999 888888765
No 220
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.57 E-value=5.6e-16 Score=158.46 Aligned_cols=159 Identities=13% Similarity=0.133 Sum_probs=117.1
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCC--ceeEEEeCCcchhhh--------hhh
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP--NEARVNIPDERFEWL--------CQL 79 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p--~~G~i~~~g~~~~~l--------~~~ 79 (374)
++.+|+++++. ..+||+|+||||||||+++|+|. ..| ++|.|.++|.++... ...
T Consensus 13 ~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~-----------~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (500)
T TIGR02633 13 GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGV-----------YPHGTWDGEIYWSGSPLKASNIRDTERAGIV 81 (500)
T ss_pred CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCCeEEEECCEECCCCCHHHHHhCCEE
Confidence 35689988764 55999999999999999999999 555 799999999765321 124
Q ss_pred ccCCCC-ccccchHhhHhhhhcccc--CC-CC---------------CCC----CCceeEecC------------CCCCc
Q 017295 80 FKPKSA-VPAFLEIHDIAGLVRGAH--EG-QG---------------AFE----DPDIIHVDD------------SVDPV 124 (374)
Q Consensus 80 ~~~~~~-~~~~~~v~D~~gl~~~~~--~~-~~---------------~~~----~~~il~l~~------------~~dP~ 124 (374)
|.+|.. ++..+++.|++.+..... .+ .. .+. +..+-.+++ +.+|
T Consensus 82 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p- 160 (500)
T TIGR02633 82 IIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQA- 160 (500)
T ss_pred EEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCC-
Confidence 667765 555678888776532111 00 00 111 112233443 5689
Q ss_pred hhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 125 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 125 ~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
+++++|||++++|+.....+.+.+.++.+++.+ |++..+..+||++ .+|++|+++..++.
T Consensus 161 -~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i-~~l~~G~i~~~~~~ 225 (500)
T TIGR02633 161 -RLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTI-CVIRDGQHVATKDM 225 (500)
T ss_pred -CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEE-EEEeCCeEeeecCc
Confidence 999999999999999999999999888765554 9999999999999 99999998866544
No 221
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.57 E-value=2.4e-16 Score=139.43 Aligned_cols=146 Identities=15% Similarity=0.122 Sum_probs=104.1
Q ss_pred cccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh----h--hhccCCCC
Q 017295 16 PILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----C--QLFKPKSA 85 (374)
Q Consensus 16 ~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l----~--~~~~~~~~ 85 (374)
.+|+++++ |..++|+|+||||||||+++|+|. .+|++|.|.++|.++... . ..|.+|..
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~ 84 (178)
T cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGD-----------LKPQQGEITLDGVPVSDLEKALSSLISVLNQRP 84 (178)
T ss_pred cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------CCCCCCEEEECCEEHHHHHHHHHhhEEEEccCC
Confidence 58888876 456999999999999999999999 789999999999876432 1 14666665
Q ss_pred ccccchHhhHhhhhccccCCCCCCCCCceeEecCCCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cc
Q 017295 86 VPAFLEIHDIAGLVRGAHEGQGAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQ 160 (374)
Q Consensus 86 ~~~~~~v~D~~gl~~~~~~~~~~~~~~~il~l~~~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~ 160 (374)
.....++.|++ ....|.|+. ....+...-+.+| +++++|||+.++|....+..++.+.+.. ++.+ |+
T Consensus 85 ~~~~~tv~~~i--~~~LS~G~~---qrv~laral~~~p--~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~ 156 (178)
T cd03247 85 YLFDTTLRNNL--GRRFSGGER---QRLALARILLQDA--PIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHH 156 (178)
T ss_pred eeecccHHHhh--cccCCHHHH---HHHHHHHHHhcCC--CEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecC
Confidence 22235777765 233333322 0000000114468 9999999999999999999999998774 4443 99
Q ss_pred hHHHHHHHHHHHHHHhCCCcee
Q 017295 161 LKIEHELCQRVKAWLQDGKDVR 182 (374)
Q Consensus 161 ~~~~~~~~d~v~~~L~~G~iv~ 182 (374)
...+. .||++ .+|++|+++.
T Consensus 157 ~~~~~-~~d~~-~~l~~g~i~~ 176 (178)
T cd03247 157 LTGIE-HMDKI-LFLENGKIIM 176 (178)
T ss_pred HHHHH-hCCEE-EEEECCEEEe
Confidence 88875 68988 8888888753
No 222
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.57 E-value=6e-16 Score=139.84 Aligned_cols=144 Identities=15% Similarity=0.093 Sum_probs=99.6
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh-----------hh
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----------CQ 78 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l-----------~~ 78 (374)
++.+|+++++. ..++|+|+||||||||+++|+|. .+|+.|+|.++|.++..+ ..
T Consensus 10 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 78 (206)
T TIGR03608 10 DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLL-----------EKFDSGQVYLNGKETPPLNSKKASKFRREKL 78 (206)
T ss_pred CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcC-----------CCCCCeEEEECCEEccccchhhHHHHHHhCe
Confidence 35688887764 56999999999999999999999 889999999999874311 11
Q ss_pred hccCCCC-ccccchHhhHhhhhccccCCCC-----------------CCCCCceeEecC------------CCCCchhHH
Q 017295 79 LFKPKSA-VPAFLEIHDIAGLVRGAHEGQG-----------------AFEDPDIIHVDD------------SVDPVRDLE 128 (374)
Q Consensus 79 ~~~~~~~-~~~~~~v~D~~gl~~~~~~~~~-----------------~~~~~~il~l~~------------~~dP~~~l~ 128 (374)
.|.+|.. +++..++.|+..+......... ...+..+..+++ +.+| +++
T Consensus 79 ~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p--~ll 156 (206)
T TIGR03608 79 GYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDP--PLI 156 (206)
T ss_pred eEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCC--CEE
Confidence 4556664 5555777777655321110000 111122222332 5689 999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHH
Q 017295 129 VISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRV 171 (374)
Q Consensus 129 ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v 171 (374)
++|||++++|........+.+.+..+++.+ |+.... ..||++
T Consensus 157 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~-~~~d~i 203 (206)
T TIGR03608 157 LADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVA-KQADRV 203 (206)
T ss_pred EEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-hhcCEE
Confidence 999999999999999999999887655443 887653 456655
No 223
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.57 E-value=2.7e-16 Score=178.81 Aligned_cols=158 Identities=15% Similarity=0.156 Sum_probs=120.4
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhh----h--hhhccCCC
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW----L--CQLFKPKS 84 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~----l--~~~~~~~~ 84 (374)
+.+|+++++ |..+||+|+||||||||||+|+|. +.|++|.|.++|.++.. . ..+|.||.
T Consensus 1952 ~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gl-----------l~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~ 2020 (2272)
T TIGR01257 1952 SPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGD-----------TTVTSGDATVAGKSILTNISDVHQNMGYCPQF 2020 (2272)
T ss_pred ceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCC-----------CCCCccEEEECCEECcchHHHHhhhEEEEecc
Confidence 568888875 456999999999999999999999 88999999999987632 1 12577887
Q ss_pred C-ccccchHhhHhhhhccccCCCC-----------------CCCCCceeEecC------------CCCCchhHHHHHHHH
Q 017295 85 A-VPAFLEIHDIAGLVRGAHEGQG-----------------AFEDPDIIHVDD------------SVDPVRDLEVISAEL 134 (374)
Q Consensus 85 ~-~~~~~~v~D~~gl~~~~~~~~~-----------------~~~~~~il~l~~------------~~dP~~~l~ilde~l 134 (374)
. ++..+++.|++.+......-.. .+.+..+-.+++ +.+| +++++|||+
T Consensus 2021 ~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P--~VLLLDEPT 2098 (2272)
T TIGR01257 2021 DAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCP--PLVLLDEPT 2098 (2272)
T ss_pred ccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCC--CEEEEECCC
Confidence 5 6667888888765322111000 111222222332 5689 999999999
Q ss_pred HhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 135 RLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 135 ~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
+++|+......++.+.+..+++.+ |+++++..+||++ .+|.+|+++..|+.
T Consensus 2099 sGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV-~IL~~G~i~~~Gs~ 2154 (2272)
T TIGR01257 2099 TGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRL-AIMVKGAFQCLGTI 2154 (2272)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEECCH
Confidence 999999999999999987666554 9999999999999 99999999877654
No 224
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.57 E-value=5.9e-16 Score=144.39 Aligned_cols=156 Identities=13% Similarity=0.108 Sum_probs=111.8
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCC-----ceeEEEeCCcchhhh-------h
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP-----NEARVNIPDERFEWL-------C 77 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p-----~~G~i~~~g~~~~~l-------~ 77 (374)
++.+|+++++ |..++|+|+||||||||+++|+|. .+| ++|.|.++|.++... .
T Consensus 16 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (251)
T PRK14270 16 EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRM-----------NDLISNVKIEGEVLLDGKNIYDKDVDVVELR 84 (251)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhc-----------cCcccCCCCccEEEECCEecccccccHHHHH
Confidence 3468888875 456999999999999999999998 443 789999999876321 1
Q ss_pred --hhccCCCC-ccccchHhhHhhhhccccCC--CC-----------CC---------CCCceeEecC------------C
Q 017295 78 --QLFKPKSA-VPAFLEIHDIAGLVRGAHEG--QG-----------AF---------EDPDIIHVDD------------S 120 (374)
Q Consensus 78 --~~~~~~~~-~~~~~~v~D~~gl~~~~~~~--~~-----------~~---------~~~~il~l~~------------~ 120 (374)
..|.+|.. ++. .++.+++.+....... .. .+ .+.....+++ +
T Consensus 85 ~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 163 (251)
T PRK14270 85 KRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIA 163 (251)
T ss_pred hheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence 24667765 333 6777777653221100 00 00 0111112222 5
Q ss_pred CCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 121 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 121 ~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
.+| +++++|||++++|+.......+.+.+..+ +.+ |+++.+..+||++ .+|++|+++..++
T Consensus 164 ~~p--~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~d~v-~~l~~G~i~~~~~ 229 (251)
T PRK14270 164 VKP--DVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQQASRVSDYT-AFFLMGDLIEFNK 229 (251)
T ss_pred cCC--CEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHHHHHHhcCEE-EEEECCeEEEeCC
Confidence 688 99999999999999999999999988764 343 9999999999999 9999999886654
No 225
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.57 E-value=5.5e-16 Score=144.44 Aligned_cols=156 Identities=13% Similarity=0.164 Sum_probs=111.4
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccC-----CceeEEEeCCcchhh-------h-
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE-----PNEARVNIPDERFEW-------L- 76 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~-----p~~G~i~~~g~~~~~-------l- 76 (374)
++.+|+++++. ..++|+|+||||||||+++|+|. .. |++|.|.++|.++.. .
T Consensus 15 ~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl-----------~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~ 83 (250)
T PRK14262 15 EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRM-----------NDHIPGFRVEGKIYFKGQDIYDPQLDVTEYR 83 (250)
T ss_pred CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhcc-----------ccCCCCCCcceEEEECCEEcccchhhHHHhh
Confidence 35688888864 55999999999999999999998 44 388999999976532 1
Q ss_pred -hhhccCCCC-ccccchHhhHhhhhccccCCC---C------------CC-------CCCceeEecC------------C
Q 017295 77 -CQLFKPKSA-VPAFLEIHDIAGLVRGAHEGQ---G------------AF-------EDPDIIHVDD------------S 120 (374)
Q Consensus 77 -~~~~~~~~~-~~~~~~v~D~~gl~~~~~~~~---~------------~~-------~~~~il~l~~------------~ 120 (374)
...|.+|.. ++. .++.|++.+........ . .+ .+..+..+++ +
T Consensus 84 ~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~ 162 (250)
T PRK14262 84 KKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALA 162 (250)
T ss_pred hhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHh
Confidence 124666665 333 67777776532111000 0 00 1111222222 5
Q ss_pred CCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 121 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 121 ~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
.+| +++++|||+.++|.......++.+.+..+ +.+ |+...+..+||++ .+|++|+++..++
T Consensus 163 ~~p--~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~~~~~~~d~i-~~l~~G~i~~~g~ 228 (250)
T PRK14262 163 VEP--EVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIGQAIRIADYI-AFMYRGELIEYGP 228 (250)
T ss_pred CCC--CEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHHHHHHhCCEE-EEEECCEEEEecC
Confidence 688 99999999999999999999999988753 444 9999999999999 8999999986654
No 226
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.57 E-value=3.6e-16 Score=148.41 Aligned_cols=157 Identities=15% Similarity=0.186 Sum_probs=113.1
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCce---eEEEeCCcchhhh-----h--hhc
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNE---ARVNIPDERFEWL-----C--QLF 80 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~---G~i~~~g~~~~~l-----~--~~~ 80 (374)
+.+|+++++ |..+||+|+||||||||+++|+|. ..|+. |.|.++|.++... . ..|
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~-----------~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~ 88 (282)
T PRK13640 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGL-----------LLPDDNPNSKITVDGITLTAKTVWDIREKVGI 88 (282)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcc-----------cCCCCCCCcEEEECCEECCcCCHHHHHhheEE
Confidence 458888876 456999999999999999999999 77887 8999999876421 1 146
Q ss_pred cCCCC--ccccchHhhHhhhhccccC-CC-----C-----------CCCCCceeEecC------------CCCCchhHHH
Q 017295 81 KPKSA--VPAFLEIHDIAGLVRGAHE-GQ-----G-----------AFEDPDIIHVDD------------SVDPVRDLEV 129 (374)
Q Consensus 81 ~~~~~--~~~~~~v~D~~gl~~~~~~-~~-----~-----------~~~~~~il~l~~------------~~dP~~~l~i 129 (374)
.+|.. .+...++.|++.+...... .. . .+.+..+-.+++ +.+| ++++
T Consensus 89 v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P--~lll 166 (282)
T PRK13640 89 VFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEP--KIII 166 (282)
T ss_pred EEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCC--CEEE
Confidence 66653 3445678887765321110 00 0 111122222332 5789 9999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 130 ISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 130 lde~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
+|||+.++|......+.+.+.++.++ +.+ |++..+ ..||++ .+|++|+++..++.
T Consensus 167 lDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~-~~~d~i-~~l~~G~i~~~g~~ 227 (282)
T PRK13640 167 LDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEA-NMADQV-LVLDDGKLLAQGSP 227 (282)
T ss_pred EECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEE-EEEECCEEEEeCCH
Confidence 99999999999999999999887654 444 999887 479999 89999999877653
No 227
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.57 E-value=5.7e-16 Score=144.56 Aligned_cols=157 Identities=13% Similarity=0.108 Sum_probs=111.8
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccC-----CceeEEEeCCcchhhh-------h
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE-----PNEARVNIPDERFEWL-------C 77 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~-----p~~G~i~~~g~~~~~l-------~ 77 (374)
.+.+|+++++. ..+||+|+||||||||+++|+|. .. |++|.|.++|.++... .
T Consensus 16 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~ 84 (252)
T PRK14256 16 KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRM-----------HDLVPSARVTGKILLDDTDIYDRGVDPVSIR 84 (252)
T ss_pred CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhc-----------ccCCCCCCCceEEEECCEEcccccCChHHhh
Confidence 34688888764 56999999999999999999998 43 3689999999776321 1
Q ss_pred --hhccCCCC-ccccchHhhHhhhhccccC---CC---C---------CCC-------CCceeEecC------------C
Q 017295 78 --QLFKPKSA-VPAFLEIHDIAGLVRGAHE---GQ---G---------AFE-------DPDIIHVDD------------S 120 (374)
Q Consensus 78 --~~~~~~~~-~~~~~~v~D~~gl~~~~~~---~~---~---------~~~-------~~~il~l~~------------~ 120 (374)
..|.+|.. ++...++.+++.+...... .. . .+. +..+-.+++ +
T Consensus 85 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~ 164 (252)
T PRK14256 85 RRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIA 164 (252)
T ss_pred ccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHh
Confidence 14667765 4555677777654311110 00 0 100 011112222 5
Q ss_pred CCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 121 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 121 ~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
.+| +++++|||+.++|........+.+.++.+ +.+ |++..+..+||++ .+|++|+++..++
T Consensus 165 ~~p--~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~i-~~l~~G~i~~~~~ 230 (252)
T PRK14256 165 VKP--EVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQQAARVSDYT-AFFYMGDLVECGE 230 (252)
T ss_pred cCC--CEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHHHHHhhCCEE-EEEECCEEEEeCC
Confidence 689 99999999999999999999999988764 344 9999999999999 8899999887654
No 228
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.56 E-value=4.4e-16 Score=146.96 Aligned_cols=156 Identities=16% Similarity=0.144 Sum_probs=111.5
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccC-----CceeEEEeCCcchhh-------hh
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE-----PNEARVNIPDERFEW-------LC 77 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~-----p~~G~i~~~g~~~~~-------l~ 77 (374)
++.+|+++++ |..+||+|+||||||||+++|+|. .. |++|.|.++|.++.. +.
T Consensus 36 ~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl-----------~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 104 (271)
T PRK14238 36 EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRM-----------VELVPSVKTTGKILYRDQNIFDKSYSVEELR 104 (271)
T ss_pred CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh-----------ccCCCCCCCceeEEECCEEcccccccHHHHh
Confidence 3468888775 456999999999999999999998 54 689999999976531 11
Q ss_pred --hhccCCCC-ccccchHhhHhhhhccccCC-C-C-----------CC---------CCCceeEecC------------C
Q 017295 78 --QLFKPKSA-VPAFLEIHDIAGLVRGAHEG-Q-G-----------AF---------EDPDIIHVDD------------S 120 (374)
Q Consensus 78 --~~~~~~~~-~~~~~~v~D~~gl~~~~~~~-~-~-----------~~---------~~~~il~l~~------------~ 120 (374)
..|.+|.. ++. .++.+++.+....... . . .+ .+.....+++ +
T Consensus 105 ~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~ 183 (271)
T PRK14238 105 TNVGMVFQKPNPFP-KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLA 183 (271)
T ss_pred hhEEEEecCCcccc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHH
Confidence 24667765 333 4777776543211100 0 0 00 0111222322 5
Q ss_pred CCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 121 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 121 ~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
.+| +++++|||++++|........+.+.+..+ +.+ |++..+..+||++ .+|++|+++..++
T Consensus 184 ~~p--~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~i~~~~d~i-~~l~~G~i~~~g~ 249 (271)
T PRK14238 184 IEP--DVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQQAARISDKT-AFFLNGYVNEYDD 249 (271)
T ss_pred cCC--CEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 689 99999999999999999999999988764 444 9999999999999 8999999987654
No 229
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.56 E-value=5.6e-16 Score=144.50 Aligned_cols=157 Identities=8% Similarity=0.101 Sum_probs=112.4
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCc-----eeEEEeCCcchhh-------h-
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN-----EARVNIPDERFEW-------L- 76 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~-----~G~i~~~g~~~~~-------l- 76 (374)
++.+|+++++ |..+||+|+||||||||+++|+|. ..|+ +|.|.++|.++.. .
T Consensus 16 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~-----------~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T PRK14272 16 DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRM-----------HDLTPGARVTGRILLDGQDIYGPRVDPVAMR 84 (252)
T ss_pred CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------CCCCcCCCCceeEEECCEEcccCccCHHHhh
Confidence 3568998875 456999999999999999999999 5553 7999999976532 1
Q ss_pred -hhhccCCCC-ccccchHhhHhhhhccccC--CCC-----------CC---------CCCceeEecC------------C
Q 017295 77 -CQLFKPKSA-VPAFLEIHDIAGLVRGAHE--GQG-----------AF---------EDPDIIHVDD------------S 120 (374)
Q Consensus 77 -~~~~~~~~~-~~~~~~v~D~~gl~~~~~~--~~~-----------~~---------~~~~il~l~~------------~ 120 (374)
...|.+|.. ++...++.|++.+...... ... .+ .+..+..+++ .
T Consensus 85 ~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~ 164 (252)
T PRK14272 85 RRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALA 164 (252)
T ss_pred ceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 124667765 5555677777754321100 000 00 0111222322 5
Q ss_pred CCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 121 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 121 ~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
.+| +++++|||++++|+.......+.+.+.. ++.+ |+...+..+||++ .+|++|+++..++
T Consensus 165 ~~p--~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~~~d~i-~~l~~G~i~~~~~ 230 (252)
T PRK14272 165 VEP--EILLMDEPTSALDPASTARIEDLMTDLK-KVTTIIIVTHNMHQAARVSDTT-SFFLVGDLVEHGP 230 (252)
T ss_pred cCC--CEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 789 9999999999999999999999998875 3444 9999999999999 9999999886553
No 230
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.56 E-value=7.8e-16 Score=143.53 Aligned_cols=156 Identities=13% Similarity=0.115 Sum_probs=109.9
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccC-----CceeEEEeCCcchhh-------hh
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE-----PNEARVNIPDERFEW-------LC 77 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~-----p~~G~i~~~g~~~~~-------l~ 77 (374)
.+.+|+++++ |..++|+|+||||||||+++|+|. .. |++|.|.++|.++.. ..
T Consensus 16 ~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~ 84 (251)
T PRK14251 16 NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRM-----------NDDIENIKITGEIKFEGQNIYGSKMDLVELR 84 (251)
T ss_pred CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhc-----------cccccCCCcceEEEECCEEcccccchHHHhh
Confidence 3568888765 456999999999999999999999 44 479999999976521 11
Q ss_pred --hhccCCCC-ccccchHhhHhhhhccccC---CC----C--------CC-------CCCceeEecC------------C
Q 017295 78 --QLFKPKSA-VPAFLEIHDIAGLVRGAHE---GQ----G--------AF-------EDPDIIHVDD------------S 120 (374)
Q Consensus 78 --~~~~~~~~-~~~~~~v~D~~gl~~~~~~---~~----~--------~~-------~~~~il~l~~------------~ 120 (374)
..|.+|.. ++ ..++.|+..+...... .. . .+ .+.....+++ .
T Consensus 85 ~~i~~~~q~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~ 163 (251)
T PRK14251 85 KEVGMVFQQPTPF-PFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALA 163 (251)
T ss_pred ccEEEEecCCccC-CCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHh
Confidence 14566664 33 2577776654321100 00 0 11 0111122222 5
Q ss_pred CCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 121 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 121 ~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
.+| +++++|||++++|+.....+.+.+.+.. ++.+ |++..+..+||++ .+|++|+++..++
T Consensus 164 ~~p--~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~~~~~~~d~i-~~l~~G~i~~~~~ 229 (251)
T PRK14251 164 VRP--KVVLLDEPTSALDPISSSEIEETLMELK-HQYTFIMVTHNLQQAGRISDQT-AFLMNGDLIEAGP 229 (251)
T ss_pred cCC--CEEEecCCCccCCHHHHHHHHHHHHHHH-cCCeEEEEECCHHHHHhhcCEE-EEEECCEEEEeCC
Confidence 689 9999999999999999999999998875 3443 9999999999999 8999999886543
No 231
>PLN03211 ABC transporter G-25; Provisional
Probab=99.56 E-value=1.3e-15 Score=159.94 Aligned_cols=169 Identities=15% Similarity=0.179 Sum_probs=122.0
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCc--eeEEEeCCcchhhh---hhhccCCC
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN--EARVNIPDERFEWL---CQLFKPKS 84 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~--~G~i~~~g~~~~~l---~~~~~~~~ 84 (374)
++.+|++++. |..+||+||||||||||+++|+|. .+|. +|.|.++|.++... ...|.+|+
T Consensus 80 ~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~-----------~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~ 148 (659)
T PLN03211 80 ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGR-----------IQGNNFTGTILANNRKPTKQILKRTGFVTQD 148 (659)
T ss_pred CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCC-----------CCCCceeEEEEECCEECchhhccceEEECcc
Confidence 5679999875 556999999999999999999999 5564 89999999875321 12577777
Q ss_pred C-ccccchHhhHhhhhccccC--CCC---------------CCC---C-----CceeEecC------------CCCCchh
Q 017295 85 A-VPAFLEIHDIAGLVRGAHE--GQG---------------AFE---D-----PDIIHVDD------------SVDPVRD 126 (374)
Q Consensus 85 ~-~~~~~~v~D~~gl~~~~~~--~~~---------------~~~---~-----~~il~l~~------------~~dP~~~ 126 (374)
. +++.+++.|++.+...... ... .+. + ...-.+++ ..+| +
T Consensus 149 ~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P--~ 226 (659)
T PLN03211 149 DILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINP--S 226 (659)
T ss_pred cccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCC--C
Confidence 5 5667888888876432110 000 110 0 01112333 5689 9
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchH-HHHHHHHHHHHHHhCCCceeccCCChhHHHHHHhc
Q 017295 127 LEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLK-IEHELCQRVKAWLQDGKDVRLGDWKAADIEILNTF 197 (374)
Q Consensus 127 l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~-~~~~~~d~v~~~L~~G~iv~~~~~~~~~~~~l~~~ 197 (374)
++++|||++++|.......++.++++++++.+ |+.. .+..++|++ .+|++|+++..|+.+ +-...++..
T Consensus 227 iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~i-ilL~~G~iv~~G~~~-~~~~~f~~~ 301 (659)
T PLN03211 227 LLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSV-LVLSEGRCLFFGKGS-DAMAYFESV 301 (659)
T ss_pred EEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceE-EEecCCcEEEECCHH-HHHHHHHHC
Confidence 99999999999999999999999988766655 9887 578899999 999999999887653 223344443
No 232
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.56 E-value=7e-16 Score=158.82 Aligned_cols=156 Identities=18% Similarity=0.221 Sum_probs=115.0
Q ss_pred ccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh--------h--hhc
Q 017295 15 RPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------C--QLF 80 (374)
Q Consensus 15 ~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l--------~--~~~ 80 (374)
+.+|+++++. ..+||+|+||||||||+++|+|. . |++|.|.++|.++... . ..|
T Consensus 299 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl-----------~-~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~ 366 (529)
T PRK15134 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRL-----------I-NSQGEIWFDGQPLHNLNRRQLLPVRHRIQV 366 (529)
T ss_pred ceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCc-----------C-CCCcEEEECCEEccccchhhHHHhhhceEE
Confidence 5689998864 45999999999999999999998 5 5799999999765321 1 246
Q ss_pred cCCCC---ccccchHhhHhhhhccccC-----CC--C---------CC----CCCceeEecC------------CCCCch
Q 017295 81 KPKSA---VPAFLEIHDIAGLVRGAHE-----GQ--G---------AF----EDPDIIHVDD------------SVDPVR 125 (374)
Q Consensus 81 ~~~~~---~~~~~~v~D~~gl~~~~~~-----~~--~---------~~----~~~~il~l~~------------~~dP~~ 125 (374)
.+|.. +++.+++.+++.+...... .. . .+ .+..+-.+++ +.+|
T Consensus 367 v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p-- 444 (529)
T PRK15134 367 VFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKP-- 444 (529)
T ss_pred EEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCC--
Confidence 66663 4556788887765321110 00 0 11 1122233333 5789
Q ss_pred hHHHHHHHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 126 DLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 126 ~l~ilde~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+++++|||++++|+.....+++.+.++.++ +.+ |++..+..+||++ .+|++|+++..++
T Consensus 445 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i-~~l~~G~i~~~~~ 509 (529)
T PRK15134 445 SLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQV-IVLRQGEVVEQGD 509 (529)
T ss_pred CEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeE-EEEECCEEEEEcC
Confidence 999999999999999999999999988754 444 9999999999999 9999999886654
No 233
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.56 E-value=5e-16 Score=147.04 Aligned_cols=157 Identities=13% Similarity=0.108 Sum_probs=113.2
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh-----h--hhccCC
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C--QLFKPK 83 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l-----~--~~~~~~ 83 (374)
..+|+++++ |..++|+|+||||||||+++|+|. ..|++|.|.++|.++... . ..|.+|
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q 88 (277)
T PRK13642 20 VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGL-----------FEEFEGKVKIDGELLTAENVWNLRRKIGMVFQ 88 (277)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-----------CCCCCCEEEECCEECCcCCHHHHhcceEEEEE
Confidence 358888876 456999999999999999999999 789999999999775421 1 146666
Q ss_pred CC--ccccchHhhHhhhhccccC-CC--------------C--CCCCCceeEecC------------CCCCchhHHHHHH
Q 017295 84 SA--VPAFLEIHDIAGLVRGAHE-GQ--------------G--AFEDPDIIHVDD------------SVDPVRDLEVISA 132 (374)
Q Consensus 84 ~~--~~~~~~v~D~~gl~~~~~~-~~--------------~--~~~~~~il~l~~------------~~dP~~~l~ilde 132 (374)
.. .....++.+++.+...... .. + .+.+..+..+++ +.+| +++++||
T Consensus 89 ~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p--~llllDE 166 (277)
T PRK13642 89 NPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRP--EIIILDE 166 (277)
T ss_pred CHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCC--CEEEEeC
Confidence 53 3444577777654311100 00 0 111222222332 5689 9999999
Q ss_pred HHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 133 ELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 133 ~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
|+.++|......+++.+.++.++ +.+ |++..+. .||++ .+|++|+++..++.
T Consensus 167 Pt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i-~~l~~G~i~~~g~~ 224 (277)
T PRK13642 167 STSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRI-LVMKAGEIIKEAAP 224 (277)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEE-EEEECCEEEEeCCH
Confidence 99999999999999999887754 544 9999986 59999 99999999876653
No 234
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.56 E-value=7.2e-16 Score=145.17 Aligned_cols=157 Identities=10% Similarity=0.077 Sum_probs=112.2
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccC-----CceeEEEeCCcchhh-------hh
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE-----PNEARVNIPDERFEW-------LC 77 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~-----p~~G~i~~~g~~~~~-------l~ 77 (374)
++.+|+++++. ..+||+|+||||||||+++|+|. .. |++|.|.++|.++.. ..
T Consensus 32 ~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl-----------~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 100 (267)
T PRK14237 32 KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRM-----------NDTIDIARVTGQILYRGIDINRKEINVYEMR 100 (267)
T ss_pred CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhc-----------cCccCCCCcceEEEECCEEcccccCChHHHh
Confidence 45788888764 45999999999999999999998 43 589999999987632 11
Q ss_pred --hhccCCCC-ccccchHhhHhhhhccccCC-CC--------------CC-------CCCceeEecC------------C
Q 017295 78 --QLFKPKSA-VPAFLEIHDIAGLVRGAHEG-QG--------------AF-------EDPDIIHVDD------------S 120 (374)
Q Consensus 78 --~~~~~~~~-~~~~~~v~D~~gl~~~~~~~-~~--------------~~-------~~~~il~l~~------------~ 120 (374)
..|.+|.. ++. .++.|++.+....... .. .+ .+.....+++ +
T Consensus 101 ~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~ 179 (267)
T PRK14237 101 KHIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIA 179 (267)
T ss_pred cceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 24667764 333 4777777653211000 00 00 0111122222 5
Q ss_pred CCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 121 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 121 ~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
.+| +++++|||++++|........+.+.+.. ++.+ |+...+..+||++ .+|++|+++..++.
T Consensus 180 ~~p--~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~~~~~~~d~i-~~l~~G~i~~~g~~ 246 (267)
T PRK14237 180 VKP--DILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQQAARASDYT-AFFYLGDLIEYDKT 246 (267)
T ss_pred cCC--CEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhcCEE-EEEECCEEEEeCCH
Confidence 688 9999999999999999999999998875 3443 9999999999999 99999999876543
No 235
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.56 E-value=8.2e-16 Score=144.98 Aligned_cols=148 Identities=9% Similarity=0.079 Sum_probs=105.1
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccC-----CceeEEEeCCcchhh-------hh
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE-----PNEARVNIPDERFEW-------LC 77 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~-----p~~G~i~~~g~~~~~-------l~ 77 (374)
.+.+|+++++. ..++|+|+||||||||+++|+|. .+ |++|.|.++|.++.. ..
T Consensus 25 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~ 93 (269)
T PRK14259 25 TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRM-----------NDLIEGCSLKGRVLFDGTDLYDPRVDPVEVR 93 (269)
T ss_pred CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------ccccCCCCCceEEEECCEEcccccCCHHHHh
Confidence 35689988764 46999999999999999999998 44 689999999876531 11
Q ss_pred --hhccCCCC-ccccchHhhHhhhhccccC--C--CC-------CC---------CCCceeEecC------------CCC
Q 017295 78 --QLFKPKSA-VPAFLEIHDIAGLVRGAHE--G--QG-------AF---------EDPDIIHVDD------------SVD 122 (374)
Q Consensus 78 --~~~~~~~~-~~~~~~v~D~~gl~~~~~~--~--~~-------~~---------~~~~il~l~~------------~~d 122 (374)
..|.+|.. ++. .++.|++.+...... . .. .+ .+..+-.+++ +.+
T Consensus 94 ~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~ 172 (269)
T PRK14259 94 RRIGMVFQQPNPFP-KSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIE 172 (269)
T ss_pred hceEEEccCCccch-hhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcC
Confidence 24667765 333 377777765322110 0 00 00 1111122222 568
Q ss_pred CchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhC
Q 017295 123 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQD 177 (374)
Q Consensus 123 P~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~ 177 (374)
| +++++|||+.++|......+++.+.++. ++.+ |++..+..+||++ .+|++
T Consensus 173 p--~lllLDEPt~gLD~~~~~~l~~~l~~~~-~~~tiiivtH~~~~~~~~~d~i-~~l~~ 228 (269)
T PRK14259 173 P--EVILMDEPCSALDPISTLKIEETMHELK-KNFTIVIVTHNMQQAVRVSDMT-AFFNA 228 (269)
T ss_pred C--CEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEE-EEEec
Confidence 9 9999999999999999999999998775 3443 9999999999999 88886
No 236
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.56 E-value=7.7e-16 Score=143.72 Aligned_cols=157 Identities=20% Similarity=0.184 Sum_probs=106.6
Q ss_pred ccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcc-----hhhh---------
Q 017295 15 RPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER-----FEWL--------- 76 (374)
Q Consensus 15 ~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~-----~~~l--------- 76 (374)
+.+|+++++. ..++|+|+||||||||+++|+|. .+|++|.|.++|.+ +...
T Consensus 16 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 84 (253)
T TIGR02323 16 GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGR-----------LAPDHGTATYIMRSGAELELYQLSEAERRRLM 84 (253)
T ss_pred ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEEecccccccccccCCHHHHHHhh
Confidence 4678888765 45999999999999999999999 78999999998865 3211
Q ss_pred h--hhccCCCC---ccccchHhhHhhhhc---cc-cCCC---C--------CC----CCCceeEecC------------C
Q 017295 77 C--QLFKPKSA---VPAFLEIHDIAGLVR---GA-HEGQ---G--------AF----EDPDIIHVDD------------S 120 (374)
Q Consensus 77 ~--~~~~~~~~---~~~~~~v~D~~gl~~---~~-~~~~---~--------~~----~~~~il~l~~------------~ 120 (374)
. ..|.+|.. ....+++.++..... .. .... . .+ .+..+-.+++ +
T Consensus 85 ~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~ 164 (253)
T TIGR02323 85 RTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLV 164 (253)
T ss_pred hcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHh
Confidence 1 13455543 222233333332100 00 0000 0 01 1111222222 5
Q ss_pred CCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 121 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 121 ~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
.+| +++++|||++++|+......++.+.+..++ +.+ |+...+..+||++ .+|++|+++..++
T Consensus 165 ~~p--~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~-~~l~~G~i~~~~~ 232 (253)
T TIGR02323 165 TRP--RLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRL-LVMQQGRVVESGL 232 (253)
T ss_pred cCC--CEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEE-EEEECCEEEEECC
Confidence 689 999999999999999999999999877644 444 9999999999999 8899999876543
No 237
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.56 E-value=3.8e-16 Score=159.35 Aligned_cols=158 Identities=15% Similarity=0.027 Sum_probs=109.2
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh-----h--hhccC
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C--QLFKP 82 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l-----~--~~~~~ 82 (374)
++.+|+++++ |..+||+|+||||||||+|+|+|. +.|++|.|.++|.++... . ..|.+
T Consensus 15 ~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~-----------~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~ 83 (490)
T PRK10938 15 DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGE-----------LPLLSGERQSQFSHITRLSFEQLQKLVSDEW 83 (490)
T ss_pred CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------CCCCCceEEECCcccccCCHHHHHHHhceec
Confidence 3468999886 456999999999999999999999 789999999987654221 1 13444
Q ss_pred CCCc----cc-----cchHhhHhhhhcc-------cc--CCCCCCCCCceeEecC------------CCCCchhHHHHHH
Q 017295 83 KSAV----PA-----FLEIHDIAGLVRG-------AH--EGQGAFEDPDIIHVDD------------SVDPVRDLEVISA 132 (374)
Q Consensus 83 ~~~~----~~-----~~~v~D~~gl~~~-------~~--~~~~~~~~~~il~l~~------------~~dP~~~l~ilde 132 (374)
|... .. .+++.++..+... .- -+.....+..+-.+++ +.+| +++++||
T Consensus 84 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p--~lllLDE 161 (490)
T PRK10938 84 QRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEP--DLLILDE 161 (490)
T ss_pred cCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCC--CEEEEcC
Confidence 4321 00 2344443221000 00 0000111222333333 5689 9999999
Q ss_pred HHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 133 ELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 133 ~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
|++++|+......++.+.++.+++.+ |++..+..+||++ .+|++|+++..++
T Consensus 162 Pt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v-~~l~~G~i~~~~~ 218 (490)
T PRK10938 162 PFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFA-GVLADCTLAETGE 218 (490)
T ss_pred CcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEE-EEEECCEEEEeCC
Confidence 99999999999999999988765544 9999999999999 8999999887654
No 238
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.56 E-value=7.4e-16 Score=161.37 Aligned_cols=157 Identities=15% Similarity=0.173 Sum_probs=114.8
Q ss_pred ccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchh----------------
Q 017295 15 RPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE---------------- 74 (374)
Q Consensus 15 ~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~---------------- 74 (374)
..+|+++++. ..+||||+||||||||+++|+|+ +.|++|.|.++|..+.
T Consensus 29 ~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gl-----------l~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 97 (623)
T PRK10261 29 IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRL-----------LEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQ 97 (623)
T ss_pred eeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcC-----------CCCCCeEEEECCEEeccccccccccccCCHHH
Confidence 4689998864 56999999999999999999999 8899999998775220
Q ss_pred --hh---hhhccCCCC---ccccchHhhHhhhhccccCCCC---------------CC------CCCceeEecC------
Q 017295 75 --WL---CQLFKPKSA---VPAFLEIHDIAGLVRGAHEGQG---------------AF------EDPDIIHVDD------ 119 (374)
Q Consensus 75 --~l---~~~~~~~~~---~~~~~~v~D~~gl~~~~~~~~~---------------~~------~~~~il~l~~------ 119 (374)
.. ...|.+|.. +.+.+++.+++.+....+.+.. .+ .+..+..+++
T Consensus 98 ~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv 177 (623)
T PRK10261 98 MRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRV 177 (623)
T ss_pred HHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHH
Confidence 01 114556653 3455677777765321110100 11 1222333444
Q ss_pred ------CCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 120 ------SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 120 ------~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+.+| +++++|||++++|+.....+++.+.++.++ +.+ |++..+..+||++ .+|++|+++..++
T Consensus 178 ~iA~AL~~~P--~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri-~vl~~G~i~~~g~ 252 (623)
T PRK10261 178 MIAMALSCRP--AVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRV-LVMYQGEAVETGS 252 (623)
T ss_pred HHHHHHhCCC--CEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEE-EEeeCCeecccCC
Confidence 6789 999999999999999999999999988754 444 9999999999999 9999999986554
No 239
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.56 E-value=3.5e-16 Score=137.50 Aligned_cols=139 Identities=23% Similarity=0.271 Sum_probs=97.5
Q ss_pred cccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-------hhccCCC
Q 017295 16 PILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKS 84 (374)
Q Consensus 16 ~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-------~~~~~~~ 84 (374)
.+|+++++. ..++|+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.+|.
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~ 84 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRL-----------YDPTSGEILIDGVDLRDLDLESLRKNIAYVPQD 84 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcC-----------CCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCC
Confidence 688888764 56999999999999999999999 7899999999998764321 1355665
Q ss_pred CccccchHhhHhhhhccccCCCCCCCCCceeEecCCCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----c
Q 017295 85 AVPAFLEIHDIAGLVRGAHEGQGAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----K 159 (374)
Q Consensus 85 ~~~~~~~v~D~~gl~~~~~~~~~~~~~~~il~l~~~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H 159 (374)
......++.|++ .|.|+. ....+...-+.+| +++++|||++++|........+.+.+.. ++.+ |
T Consensus 85 ~~~~~~t~~e~l-----LS~G~~---~rl~la~al~~~p--~llllDEP~~gLD~~~~~~l~~~l~~~~-~~~tii~~sh 153 (171)
T cd03228 85 PFLFSGTIRENI-----LSGGQR---QRIAIARALLRDP--PILILDEATSALDPETEALILEALRALA-KGKTVIVIAH 153 (171)
T ss_pred chhccchHHHHh-----hCHHHH---HHHHHHHHHhcCC--CEEEEECCCcCCCHHHHHHHHHHHHHhc-CCCEEEEEec
Confidence 422234777765 222221 0000000013468 9999999999999999999999888765 3343 9
Q ss_pred chHHHHHHHHHHHHHHhCC
Q 017295 160 QLKIEHELCQRVKAWLQDG 178 (374)
Q Consensus 160 ~~~~~~~~~d~v~~~L~~G 178 (374)
+...+.. ||++ .+|++|
T Consensus 154 ~~~~~~~-~d~~-~~l~~g 170 (171)
T cd03228 154 RLSTIRD-ADRI-IVLDDG 170 (171)
T ss_pred CHHHHHh-CCEE-EEEcCC
Confidence 8888766 8887 666655
No 240
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.56 E-value=5.9e-16 Score=140.95 Aligned_cols=152 Identities=18% Similarity=0.172 Sum_probs=101.3
Q ss_pred ccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEE-eCCcchhhhhhhccCCCCccccch
Q 017295 17 ILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVN-IPDERFEWLCQLFKPKSAVPAFLE 91 (374)
Q Consensus 17 vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~-~~g~~~~~l~~~~~~~~~~~~~~~ 91 (374)
+|+++++ |..+||+|+||||||||+++|+|. ..|++|.|. +++..+. ..+ ...+++.++
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl-----------~~~~sG~i~~~~~~~~~---~~~--~~~l~~~lt 65 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGL-----------DAPDEGDFIGLRGDALP---LGA--NSFILPGLT 65 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------ccCCCCCEEEecCceec---ccc--ccccCCcCc
Confidence 5666665 556999999999999999999999 789999997 6664321 011 112444566
Q ss_pred HhhHhhhhccccCCCC--------------CCCCCceeEecC------------CCCCchhHHHHHHHHHhhcHHHHHHH
Q 017295 92 IHDIAGLVRGAHEGQG--------------AFEDPDIIHVDD------------SVDPVRDLEVISAELRLKDIEFMERR 145 (374)
Q Consensus 92 v~D~~gl~~~~~~~~~--------------~~~~~~il~l~~------------~~dP~~~l~ilde~l~~~D~~~~~~~ 145 (374)
+.++..+....+.... ...+..+-.++. +.+| ++.++|||+..+|.......
T Consensus 66 v~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p--~llllDEP~~~lD~~~~~~~ 143 (213)
T PRK15177 66 GEENARMMASLYGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPC--RLYIADGKLYTGDNATQLRM 143 (213)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCC--CEEEECCCCccCCHHHHHHH
Confidence 6666655322111000 000111111221 5688 99999999999999988888
Q ss_pred HHHHHHHHHccC----ccchHHHHHHHHHHHHHHhCCCceeccCCC
Q 017295 146 IEDVEKSMKRSN----DKQLKIEHELCQRVKAWLQDGKDVRLGDWK 187 (374)
Q Consensus 146 ~~~i~~~~~~~~----~H~~~~~~~~~d~v~~~L~~G~iv~~~~~~ 187 (374)
...+.+..+..+ +|++..+..+||++ .+|++|+++..++..
T Consensus 144 ~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i-~~l~~G~i~~~~~~~ 188 (213)
T PRK15177 144 QAALACQLQQKGLIVLTHNPRLIKEHCHAF-GVLLHGKITMCEDLA 188 (213)
T ss_pred HHHHHHHhhCCcEEEEECCHHHHHHhcCee-EEEECCeEEEeCCHH
Confidence 877754432222 29999999999999 899999988665443
No 241
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.55 E-value=1.4e-15 Score=155.59 Aligned_cols=156 Identities=15% Similarity=0.090 Sum_probs=113.5
Q ss_pred ccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCC-ceeEEEeCCcchhhh------h--hhcc
Q 017295 15 RPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP-NEARVNIPDERFEWL------C--QLFK 81 (374)
Q Consensus 15 ~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p-~~G~i~~~g~~~~~l------~--~~~~ 81 (374)
+.+|+++++. ..+||+|+||||||||+++|+|. ..| ++|.|.++|+++... . ..|.
T Consensus 273 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~-----------~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v 341 (500)
T TIGR02633 273 RKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGA-----------YPGKFEGNVFINGKPVDIRNPAQAIRAGIAMV 341 (500)
T ss_pred ccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCC-----------CCCCCCeEEEECCEECCCCCHHHHHhCCCEEc
Confidence 4688888764 55999999999999999999999 775 899999998765311 1 2466
Q ss_pred CCCC----ccccchHhhHhhhhcc--ccC--C-C-C-------------CCC----CCceeEecC------------CCC
Q 017295 82 PKSA----VPAFLEIHDIAGLVRG--AHE--G-Q-G-------------AFE----DPDIIHVDD------------SVD 122 (374)
Q Consensus 82 ~~~~----~~~~~~v~D~~gl~~~--~~~--~-~-~-------------~~~----~~~il~l~~------------~~d 122 (374)
+|.. +++.+++.+++.+... ... . . . .+. +..+-.+++ +.+
T Consensus 342 ~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~ 421 (500)
T TIGR02633 342 PEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTN 421 (500)
T ss_pred CcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhC
Confidence 6662 4555677776654210 000 0 0 0 111 122333443 568
Q ss_pred CchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceecc
Q 017295 123 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLG 184 (374)
Q Consensus 123 P~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~ 184 (374)
| +++++|||++++|+.....+++.+..+.+++.+ |++..+..+||++ .+|++|+++...
T Consensus 422 p--~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v-~~l~~G~i~~~~ 485 (500)
T TIGR02633 422 P--RVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRV-LVIGEGKLKGDF 485 (500)
T ss_pred C--CEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEE-EEEECCEEEEEE
Confidence 9 999999999999999999999999887766554 9999999999999 889999987654
No 242
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.55 E-value=9.5e-16 Score=143.60 Aligned_cols=157 Identities=14% Similarity=0.102 Sum_probs=110.4
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccC-----CceeEEEeCCcchhh-------hh
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE-----PNEARVNIPDERFEW-------LC 77 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~-----p~~G~i~~~g~~~~~-------l~ 77 (374)
++.+|+++++ |..+||+|+||||||||+++|+|. .. |++|.|.++|.++.. ..
T Consensus 16 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl-----------~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~ 84 (258)
T PRK14241 16 SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRM-----------HEVIPGARVEGEVLLDGEDLYGPGVDPVAVR 84 (258)
T ss_pred CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcc-----------CCcccCCCcceEEEECCEeccccccChHHHh
Confidence 3568888876 456999999999999999999998 44 379999999976521 11
Q ss_pred --hhccCCCC-ccccchHhhHhhhhccccCC--CC-------------CC-------CCCceeEecC------------C
Q 017295 78 --QLFKPKSA-VPAFLEIHDIAGLVRGAHEG--QG-------------AF-------EDPDIIHVDD------------S 120 (374)
Q Consensus 78 --~~~~~~~~-~~~~~~v~D~~gl~~~~~~~--~~-------------~~-------~~~~il~l~~------------~ 120 (374)
..|.+|.. ++...++.|++.+....... .. .+ .+..+..+++ .
T Consensus 85 ~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 164 (258)
T PRK14241 85 RTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIA 164 (258)
T ss_pred cceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence 24666664 45556777776543211100 00 00 0111222332 5
Q ss_pred CCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHh------CCCceeccC
Q 017295 121 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQ------DGKDVRLGD 185 (374)
Q Consensus 121 ~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~------~G~iv~~~~ 185 (374)
.+| +++++|||++++|+.....+++.+.+.. ++.+ |++..+..+||++ .+|+ +|+++..++
T Consensus 165 ~~p--~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tviivsH~~~~~~~~~d~i-~~l~~~~~~~~g~i~~~~~ 236 (258)
T PRK14241 165 VEP--DVLLMDEPCSALDPISTLAIEDLINELK-QDYTIVIVTHNMQQAARVSDQT-AFFNLEATGKPGRLVEIDD 236 (258)
T ss_pred cCC--CEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEE-EEEecccCCCCceEEecCC
Confidence 689 9999999999999999999999998875 3444 9999999999999 7775 688876553
No 243
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.55 E-value=6.1e-16 Score=141.31 Aligned_cols=151 Identities=19% Similarity=0.232 Sum_probs=106.1
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh-----h--hhccCC
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C--QLFKPK 83 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l-----~--~~~~~~ 83 (374)
+.+|+++++ |..++|+|+||||||||+++|+|. ..|+.|.|.++|.++... . ..|.+|
T Consensus 17 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q 85 (220)
T cd03245 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGL-----------YKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQ 85 (220)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------cCCCCCeEEECCEEhHHCCHHHHHhhEEEeCC
Confidence 468888875 455999999999999999999999 779999999999765321 1 146666
Q ss_pred CC-ccccchHhhHhhhhccccCCCC--------CCC---C-----------CceeEecC------------CCCCchhHH
Q 017295 84 SA-VPAFLEIHDIAGLVRGAHEGQG--------AFE---D-----------PDIIHVDD------------SVDPVRDLE 128 (374)
Q Consensus 84 ~~-~~~~~~v~D~~gl~~~~~~~~~--------~~~---~-----------~~il~l~~------------~~dP~~~l~ 128 (374)
.. ++. .++.|+..+......... .+. + ..+..+++ +.+| +++
T Consensus 86 ~~~~~~-~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p--~ll 162 (220)
T cd03245 86 DVTLFY-GTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDP--PIL 162 (220)
T ss_pred CCcccc-chHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCC--CEE
Confidence 65 332 477776654311100000 000 0 01112332 5688 999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCcee
Q 017295 129 VISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVR 182 (374)
Q Consensus 129 ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~ 182 (374)
++|||++++|......+++.+.+..+. .+ |+.... ++||++ .+|++|+++.
T Consensus 163 llDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~-~~~d~v-~~l~~g~i~~ 218 (220)
T cd03245 163 LLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPSLL-DLVDRI-IVMDSGRIVA 218 (220)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHHHH-HhCCEE-EEEeCCeEee
Confidence 999999999999999999999887643 33 998875 789999 8888888753
No 244
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.55 E-value=8.1e-16 Score=143.45 Aligned_cols=158 Identities=12% Similarity=0.132 Sum_probs=110.9
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCC---ceeEEEeCCcchhh-------hh--
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP---NEARVNIPDERFEW-------LC-- 77 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p---~~G~i~~~g~~~~~-------l~-- 77 (374)
++.+|+++++ |..++|+|+||||||||+++|+|... ..| ++|.|.++|.++.. +.
T Consensus 17 ~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---------~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 87 (252)
T PRK14239 17 KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMND---------LNPEVTITGSIVYNGHNIYSPRTDTVDLRKE 87 (252)
T ss_pred CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccc---------cCCCCCccceEEECCEECcCcccchHhhhhc
Confidence 3468888876 45699999999999999999999721 125 58999999976521 11
Q ss_pred hhccCCCC-ccccchHhhHhhhhccccC---CCC------------CC-------CCCceeEecC------------CCC
Q 017295 78 QLFKPKSA-VPAFLEIHDIAGLVRGAHE---GQG------------AF-------EDPDIIHVDD------------SVD 122 (374)
Q Consensus 78 ~~~~~~~~-~~~~~~v~D~~gl~~~~~~---~~~------------~~-------~~~~il~l~~------------~~d 122 (374)
..|.+|.. ++. .++.|++.+...... ... .+ .+..+..+++ +.+
T Consensus 88 i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 166 (252)
T PRK14239 88 IGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATS 166 (252)
T ss_pred EEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcC
Confidence 24667765 333 677777754321100 000 00 0111222332 568
Q ss_pred CchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 123 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 123 P~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
| +++++|||++++|......+.+.+.+..+ +.+ |++..+..+||++ .+|++|+++..++
T Consensus 167 p--~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i-~~l~~G~i~~~g~ 230 (252)
T PRK14239 167 P--KIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQQASRISDRT-GFFLDGDLIEYND 230 (252)
T ss_pred C--CEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 9 99999999999999999999999988753 344 9999999999999 9999999886654
No 245
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.55 E-value=8.9e-16 Score=140.91 Aligned_cols=146 Identities=16% Similarity=0.125 Sum_probs=102.8
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh-----h--hhccC
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C--QLFKP 82 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l-----~--~~~~~ 82 (374)
++.+|+++++. ..++|+|+||||||||+++|+|. .+|++|.|.++|.++... . ..|.+
T Consensus 19 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 87 (225)
T PRK10247 19 DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASL-----------ISPTSGTLLFEGEDISTLKPEIYRQQVSYCA 87 (225)
T ss_pred CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------cCCCCCeEEECCEEcCcCCHHHHHhccEEEe
Confidence 45689998864 45999999999999999999999 789999999998765321 1 24666
Q ss_pred CCC-ccccchHhhHhhhhccccCCC--C----------CC----CCCceeEecC------------CCCCchhHHHHHHH
Q 017295 83 KSA-VPAFLEIHDIAGLVRGAHEGQ--G----------AF----EDPDIIHVDD------------SVDPVRDLEVISAE 133 (374)
Q Consensus 83 ~~~-~~~~~~v~D~~gl~~~~~~~~--~----------~~----~~~~il~l~~------------~~dP~~~l~ilde~ 133 (374)
|.. ++. .++.|+..+........ . .+ .+..+..+++ +.+| +++++|||
T Consensus 88 q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p--~llllDEP 164 (225)
T PRK10247 88 QTPTLFG-DTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMP--KVLLLDEI 164 (225)
T ss_pred ccccccc-ccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCC--CEEEEeCC
Confidence 665 333 47777765532111100 0 11 1122223332 5789 99999999
Q ss_pred HHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHH
Q 017295 134 LRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWL 175 (374)
Q Consensus 134 l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L 175 (374)
+.++|........+.+.+..++ +.+ |+...+. .||++ .+|
T Consensus 165 t~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i-~~l 210 (225)
T PRK10247 165 TSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKV-ITL 210 (225)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEE-EEE
Confidence 9999999999999999887654 443 9888874 58888 666
No 246
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.55 E-value=1.4e-15 Score=137.22 Aligned_cols=145 Identities=18% Similarity=0.198 Sum_probs=100.8
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh----h--hhccCC
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----C--QLFKPK 83 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l----~--~~~~~~ 83 (374)
.+.+|+++++ |..+||+|+||||||||+++|+|. ..|++|.|.++|.++... . ..|.+|
T Consensus 12 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (201)
T cd03231 12 GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGL-----------SPPLAGRVLLNGGPLDFQRDSIARGLLYLGH 80 (201)
T ss_pred CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEecccccHHhhhheEEecc
Confidence 3568888765 566999999999999999999999 789999999998765321 1 135565
Q ss_pred CC-ccccchHhhHhhhhccccCCCC-----------CCCCCceeEecC------------CCCCchhHHHHHHHHHhhcH
Q 017295 84 SA-VPAFLEIHDIAGLVRGAHEGQG-----------AFEDPDIIHVDD------------SVDPVRDLEVISAELRLKDI 139 (374)
Q Consensus 84 ~~-~~~~~~v~D~~gl~~~~~~~~~-----------~~~~~~il~l~~------------~~dP~~~l~ilde~l~~~D~ 139 (374)
.. ++...++.|+..+......... .+.+..+..+++ +.+| +++++|||++++|+
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p--~llllDEPt~~LD~ 158 (201)
T cd03231 81 APGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGR--PLWILDEPTTALDK 158 (201)
T ss_pred ccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCH
Confidence 54 4445677777655321110000 111122222332 5689 99999999999999
Q ss_pred HHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHH
Q 017295 140 EFMERRIEDVEKSMKRSND-----KQLKIEHELCQRV 171 (374)
Q Consensus 140 ~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v 171 (374)
.......+.+.+..+.+.+ |+.......++++
T Consensus 159 ~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~ 195 (201)
T cd03231 159 AGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARE 195 (201)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCchhhhhcccee
Confidence 9999999988876655544 8777777777766
No 247
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.55 E-value=1.2e-15 Score=156.15 Aligned_cols=159 Identities=13% Similarity=0.166 Sum_probs=116.1
Q ss_pred cccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh--------hhhccCC
Q 017295 16 PILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------CQLFKPK 83 (374)
Q Consensus 16 ~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l--------~~~~~~~ 83 (374)
.+|+++++ |..+||+|+||||||||+++|+|. .+|++|.|.++|+++... ...|.+|
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q 335 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGA-----------TRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPE 335 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCC-----------CcCCCceEEECCEECCCCCHHHHHhCCCEEcCc
Confidence 46787775 456999999999999999999999 789999999998765321 1136666
Q ss_pred CC----ccccchHhhHhhhhccccC---C----C-----C--------CC----CCCceeEecC------------CCCC
Q 017295 84 SA----VPAFLEIHDIAGLVRGAHE---G----Q-----G--------AF----EDPDIIHVDD------------SVDP 123 (374)
Q Consensus 84 ~~----~~~~~~v~D~~gl~~~~~~---~----~-----~--------~~----~~~~il~l~~------------~~dP 123 (374)
.. +++.+++.+++.+...... + . . .+ .+..+-.+++ +.+|
T Consensus 336 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p 415 (501)
T PRK11288 336 DRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDM 415 (501)
T ss_pred CHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCC
Confidence 52 4555677777544211000 0 0 0 11 1223334444 5689
Q ss_pred chhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCCCh
Q 017295 124 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWKA 188 (374)
Q Consensus 124 ~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~~~ 188 (374)
+++++|||++++|+......++.+.++.+.+.+ |++..+..+||++ .+|++|+++..+...+
T Consensus 416 --~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i-~~l~~g~i~~~~~~~~ 482 (501)
T PRK11288 416 --KVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRI-VVMREGRIAGELAREQ 482 (501)
T ss_pred --CEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEE-EEEECCEEEEEEcccc
Confidence 999999999999999999999999888766554 9999999999999 8999999887665443
No 248
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.55 E-value=8e-16 Score=143.78 Aligned_cols=157 Identities=14% Similarity=0.150 Sum_probs=108.2
Q ss_pred ccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCC----ceeEEEeCCcchhhh-----hhhcc
Q 017295 15 RPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP----NEARVNIPDERFEWL-----CQLFK 81 (374)
Q Consensus 15 ~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p----~~G~i~~~g~~~~~l-----~~~~~ 81 (374)
+.+|+++++. ..++|+|+||||||||+++|+|. .+| ++|.|.++|.++... ...|.
T Consensus 16 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v 84 (254)
T PRK10418 16 QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGI-----------LPAGVRQTAGRVLLDGKPVAPCALRGRKIATI 84 (254)
T ss_pred cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCCcCCEEEECCeeccccccccceEEEE
Confidence 4688888764 56999999999999999999999 667 899999999775321 12355
Q ss_pred CCCC---ccccchHhhHhhhh---ccccCCCC---------CC------CCCceeEecC------------CCCCchhHH
Q 017295 82 PKSA---VPAFLEIHDIAGLV---RGAHEGQG---------AF------EDPDIIHVDD------------SVDPVRDLE 128 (374)
Q Consensus 82 ~~~~---~~~~~~v~D~~gl~---~~~~~~~~---------~~------~~~~il~l~~------------~~dP~~~l~ 128 (374)
+|.. +.+..++.++.... .+...... .+ .+..+..+++ +.+| +++
T Consensus 85 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p--~lL 162 (254)
T PRK10418 85 MQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEA--PFI 162 (254)
T ss_pred ecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCC--CEE
Confidence 6653 22223443332211 00000000 11 1122223333 5789 999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 129 VISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 129 ilde~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
++|||+.++|......+++.+.+..++ +.+ |+...+..+||++ .+|++|+++..++
T Consensus 163 lLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v-~~l~~G~i~~~~~ 224 (254)
T PRK10418 163 IADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDV-AVMSHGRIVEQGD 224 (254)
T ss_pred EEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEE-EEEECCEEEEecC
Confidence 999999999999999999999887654 443 9999999999999 8999999876543
No 249
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.55 E-value=1.1e-15 Score=134.90 Aligned_cols=127 Identities=17% Similarity=0.141 Sum_probs=90.0
Q ss_pred ccccc---cccCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccch
Q 017295 15 RPILG---RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLE 91 (374)
Q Consensus 15 ~~vL~---~i~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~ 91 (374)
+.+++ .+..|..++|+|+||||||||+++|+|. ..|++|.|.++|..+. |.+|...
T Consensus 13 ~~~l~~~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~i~-----~~~q~~~----- 71 (177)
T cd03222 13 FFLLVELGVVKEGEVIGIVGPNGTGKTTAVKILAGQ-----------LIPNGDNDEWDGITPV-----YKPQYID----- 71 (177)
T ss_pred EEEEccCcEECCCCEEEEECCCCChHHHHHHHHHcC-----------CCCCCcEEEECCEEEE-----EEcccCC-----
Confidence 44555 4477888999999999999999999999 8899999999986543 2222210
Q ss_pred HhhHhhhhccccCCCCCCCCCceeEecCCCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHcc-Cc-----cchHHHH
Q 017295 92 IHDIAGLVRGAHEGQGAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRS-ND-----KQLKIEH 165 (374)
Q Consensus 92 v~D~~gl~~~~~~~~~~~~~~~il~l~~~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~-~~-----H~~~~~~ 165 (374)
.|.|+. ....+...-+.+| ++.++|||++++|........+.+.+..+++ .+ |++..+.
T Consensus 72 ----------LSgGq~---qrv~laral~~~p--~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 72 ----------LSGGEL---QRVAIAAALLRNA--TFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred ----------CCHHHH---HHHHHHHHHhcCC--CEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 111111 0000000003457 8999999999999999999999998876554 43 9999888
Q ss_pred HHHHHHHHHHhCC
Q 017295 166 ELCQRVKAWLQDG 178 (374)
Q Consensus 166 ~~~d~v~~~L~~G 178 (374)
.+||++ .+|+++
T Consensus 137 ~~~d~i-~~l~~~ 148 (177)
T cd03222 137 YLSDRI-HVFEGE 148 (177)
T ss_pred HhCCEE-EEEcCC
Confidence 889988 666554
No 250
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.55 E-value=1.1e-15 Score=143.21 Aligned_cols=156 Identities=17% Similarity=0.167 Sum_probs=110.4
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccC--C---ceeEEEeCCcchhh-------hh
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE--P---NEARVNIPDERFEW-------LC 77 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~--p---~~G~i~~~g~~~~~-------l~ 77 (374)
.+.+|+++++ |..++|+|+||||||||+++|+|. .. | ++|.|.++|.++.. ..
T Consensus 24 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-----------~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~ 92 (259)
T PRK14274 24 QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLM-----------IQMVPNVKLTGEMNYNGSNILKGKVDLVELR 92 (259)
T ss_pred CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh-----------ccCCCCCCCceEEEECCEEccccccCHHHHh
Confidence 3568888765 556999999999999999999998 44 3 58999999987531 11
Q ss_pred --hhccCCCC-ccccchHhhHhhhhccccCC-C-C-------------CC-------CCCceeEecC------------C
Q 017295 78 --QLFKPKSA-VPAFLEIHDIAGLVRGAHEG-Q-G-------------AF-------EDPDIIHVDD------------S 120 (374)
Q Consensus 78 --~~~~~~~~-~~~~~~v~D~~gl~~~~~~~-~-~-------------~~-------~~~~il~l~~------------~ 120 (374)
..|.+|.. ++. .++.|+..+....... . . .+ .+.....+++ +
T Consensus 93 ~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~ 171 (259)
T PRK14274 93 KNIGMVFQKGNPFP-QSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALA 171 (259)
T ss_pred hceEEEecCCcccc-cCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHh
Confidence 14667664 333 3777776543211100 0 0 11 0111122222 5
Q ss_pred CCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 121 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 121 ~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
.+| +++++|||++++|+......++.+.+..+ +.+ |++..+..+||++ .+|++|+++..++
T Consensus 172 ~~p--~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~~~~~d~i-~~l~~G~i~~~g~ 237 (259)
T PRK14274 172 TNP--DVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQQAARVSDQT-AFFYMGELVECND 237 (259)
T ss_pred cCC--CEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 689 99999999999999999999999988753 443 9999999999999 8999999987654
No 251
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.55 E-value=1e-15 Score=144.13 Aligned_cols=156 Identities=14% Similarity=0.144 Sum_probs=111.3
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccC-----CceeEEEeCCcchhhh-------h
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE-----PNEARVNIPDERFEWL-------C 77 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~-----p~~G~i~~~g~~~~~l-------~ 77 (374)
++.+|+++++. ..++|+|+||||||||+++|+|. .. |++|.|.++|.++... .
T Consensus 31 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~ 99 (267)
T PRK14235 31 EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRM-----------NDTIDGCRVTGKITLDGEDIYDPRLDVVELR 99 (267)
T ss_pred CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhh-----------cccccCCCCceEEEECCEECcccccchHHHh
Confidence 35688888764 55999999999999999999998 44 4899999999776321 1
Q ss_pred --hhccCCCC-ccccchHhhHhhhhccccC---CCC-------------CCC-------CCceeEecC------------
Q 017295 78 --QLFKPKSA-VPAFLEIHDIAGLVRGAHE---GQG-------------AFE-------DPDIIHVDD------------ 119 (374)
Q Consensus 78 --~~~~~~~~-~~~~~~v~D~~gl~~~~~~---~~~-------------~~~-------~~~il~l~~------------ 119 (374)
..|.+|.. ++. .++.|++.+....+. ... .+. +.....+++
T Consensus 100 ~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral 178 (267)
T PRK14235 100 ARVGMVFQKPNPFP-KSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAI 178 (267)
T ss_pred hceEEEecCCCCCC-CcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHH
Confidence 14666664 333 377777765321110 000 110 111222332
Q ss_pred CCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 120 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 120 ~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+.+| +++++|||+.++|+.......+.+.++.+ +.+ |++..+..+||++ .+|++|+++..++
T Consensus 179 ~~~p--~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~~~~~~~d~v-~~l~~G~i~~~g~ 245 (267)
T PRK14235 179 AVSP--EVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQQAARVSQRT-AFFHLGNLVEVGD 245 (267)
T ss_pred HcCC--CEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHHHHHhhCCEE-EEEECCEEEEeCC
Confidence 5689 99999999999999999999999988753 444 9999999999999 8899999886653
No 252
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.54 E-value=2.5e-15 Score=134.19 Aligned_cols=132 Identities=13% Similarity=0.099 Sum_probs=90.1
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhh-------hh--hhc
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLF 80 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~-------l~--~~~ 80 (374)
++.+|+++++ |..+||+|+||||||||+++|+|. .+|++|.|.++|.++.. .. ..|
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 72 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGL-----------LRPQSGAVLIDGEPLDYSRKGLLERRQRVGL 72 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceeEEECCEEccccccchHHHHhhEEE
Confidence 4568888776 456999999999999999999999 78999999999976531 11 146
Q ss_pred cCCCC--ccccchHhhHhhhhccccCCC------C-----------CCCCCceeEecC------------CCCCchhHHH
Q 017295 81 KPKSA--VPAFLEIHDIAGLVRGAHEGQ------G-----------AFEDPDIIHVDD------------SVDPVRDLEV 129 (374)
Q Consensus 81 ~~~~~--~~~~~~v~D~~gl~~~~~~~~------~-----------~~~~~~il~l~~------------~~dP~~~l~i 129 (374)
.+|.. .....++.|++.+........ . .+.+..+..+++ +.+| ++++
T Consensus 73 ~~q~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p--~lll 150 (190)
T TIGR01166 73 VFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRP--DVLL 150 (190)
T ss_pred EecChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCC--CEEE
Confidence 66653 222357777765532111000 0 111122222322 5689 9999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHccCc
Q 017295 130 ISAELRLKDIEFMERRIEDVEKSMKRSND 158 (374)
Q Consensus 130 lde~l~~~D~~~~~~~~~~i~~~~~~~~~ 158 (374)
+|||+.++|........+.+.+..+++.+
T Consensus 151 lDEPt~~LD~~~~~~~~~~l~~~~~~~~t 179 (190)
T TIGR01166 151 LDEPTAGLDPAGREQMLAILRRLRAEGMT 179 (190)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHcCCE
Confidence 99999999999999999988877654443
No 253
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.54 E-value=1e-15 Score=148.12 Aligned_cols=162 Identities=13% Similarity=0.106 Sum_probs=114.5
Q ss_pred ccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhh-------hh--hhcc
Q 017295 15 RPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLFK 81 (374)
Q Consensus 15 ~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~-------l~--~~~~ 81 (374)
+.+|+++++. ..+||+|+||||||||+++|+|..... .-.|+.|.|.++|.++.. +. ..|.
T Consensus 95 ~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~------~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v 168 (329)
T PRK14257 95 KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLI------EGTSHEGEIYFLGTNTRSKKISSLELRTRIGMV 168 (329)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccc------CCCCCceEEEECCEEccccccchHhhhccEEEE
Confidence 4688888864 459999999999999999999982100 002678999999988741 11 2477
Q ss_pred CCCCccccchHhhHhhhhccccCC--CC-------------CC-------CCCceeEecC------------CCCCchhH
Q 017295 82 PKSAVPAFLEIHDIAGLVRGAHEG--QG-------------AF-------EDPDIIHVDD------------SVDPVRDL 127 (374)
Q Consensus 82 ~~~~~~~~~~v~D~~gl~~~~~~~--~~-------------~~-------~~~~il~l~~------------~~dP~~~l 127 (374)
||.......++.|++.+....... .. .+ .......+++ ..+| ++
T Consensus 169 ~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p--~I 246 (329)
T PRK14257 169 FQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEP--EV 246 (329)
T ss_pred ecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCC--CE
Confidence 777644457888888754321100 00 11 0111112222 5688 99
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 128 EVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 128 ~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
+++|||++++|+.....+.+.+....+ +.+ |++..+..+||++ .+|++|+++..++.
T Consensus 247 lLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~~i~~~~Dri-ivl~~G~i~e~g~~ 308 (329)
T PRK14257 247 LLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMAQAQRISDET-VFFYQGWIEEAGET 308 (329)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEeCCH
Confidence 999999999999999998888887764 444 9999999999999 99999999877653
No 254
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.54 E-value=7.6e-16 Score=149.28 Aligned_cols=162 Identities=11% Similarity=0.071 Sum_probs=112.9
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-----------h
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----------Q 78 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-----------~ 78 (374)
...+|+++++. ..+||+|+||||||||+++|+|+.. |. ..|++|.|.++|.++..+. .
T Consensus 19 ~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~-----~~--~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i 91 (330)
T PRK15093 19 WVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTK-----DN--WRVTADRMRFDDIDLLRLSPRERRKLVGHNV 91 (330)
T ss_pred CEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCC-----CC--CCCcceEEEECCEECCcCCHHHHHHHhCCCE
Confidence 35689998865 4599999999999999999999921 00 1268999999998753211 2
Q ss_pred hccCCCC---ccccchHhhHhhhhc-c--ccC----C-----CC--------CCC------CCceeEecC----------
Q 017295 79 LFKPKSA---VPAFLEIHDIAGLVR-G--AHE----G-----QG--------AFE------DPDIIHVDD---------- 119 (374)
Q Consensus 79 ~~~~~~~---~~~~~~v~D~~gl~~-~--~~~----~-----~~--------~~~------~~~il~l~~---------- 119 (374)
.|.+|.. +.+.+++.+++.... . ... . .. .+. +.....+++
T Consensus 92 ~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iAr 171 (330)
T PRK15093 92 SMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAI 171 (330)
T ss_pred EEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHH
Confidence 3566653 344455555543210 0 000 0 00 111 112223333
Q ss_pred --CCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 120 --SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 120 --~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+.+| +++++|||++++|......+++.+.++.++ +.+ |++..+..+||++ .+|.+|+++..++
T Consensus 172 AL~~~P--~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri-~vm~~G~ive~g~ 242 (330)
T PRK15093 172 ALANQP--RLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKI-NVLYCGQTVETAP 242 (330)
T ss_pred HHHCCC--CEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 6789 999999999999999999999999988754 444 9999999999999 9999999987764
No 255
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.54 E-value=1.1e-15 Score=142.45 Aligned_cols=159 Identities=12% Similarity=0.097 Sum_probs=110.1
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCC--ceeEEEeCCcchhhh-------h--h
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP--NEARVNIPDERFEWL-------C--Q 78 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p--~~G~i~~~g~~~~~l-------~--~ 78 (374)
.+.+|+++++ |..+||+|+||||||||+++|+|.... ..| ++|.|.++|.++... . .
T Consensus 15 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~--------~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 86 (250)
T PRK14245 15 DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDL--------IPATRLEGEIRIDGRNIYDKGVQVDELRKNV 86 (250)
T ss_pred CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcc--------cCCCCCceEEEECCEecccccccHHHHhhhe
Confidence 3568888765 556999999999999999999996110 123 589999999876321 1 2
Q ss_pred hccCCCC-ccccchHhhHhhhhccccC---CC----C------CC---------CCCceeEecC------------CCCC
Q 017295 79 LFKPKSA-VPAFLEIHDIAGLVRGAHE---GQ----G------AF---------EDPDIIHVDD------------SVDP 123 (374)
Q Consensus 79 ~~~~~~~-~~~~~~v~D~~gl~~~~~~---~~----~------~~---------~~~~il~l~~------------~~dP 123 (374)
.|.+|.. ++. .++.|++.+...... .. . .+ .+.....+++ +.+|
T Consensus 87 ~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p 165 (250)
T PRK14245 87 GMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSP 165 (250)
T ss_pred EEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 4667664 332 477776654321100 00 0 11 0111122332 5689
Q ss_pred chhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 124 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 124 ~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+++++|||++++|+.......+.+.+.. ++.+ |+...+.++||++ .+|++|+++..++
T Consensus 166 --~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~~~~~~~d~v-~~l~~G~~~~~~~ 228 (250)
T PRK14245 166 --SVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQQAARVSDKT-AFFYMGEMVEYDD 228 (250)
T ss_pred --CEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHhhCCEE-EEEECCEEEEECC
Confidence 9999999999999999999999998875 4444 9999999999999 8899999887654
No 256
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.54 E-value=9.4e-16 Score=142.89 Aligned_cols=161 Identities=16% Similarity=0.189 Sum_probs=110.8
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhh-------hh--hhc
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLF 80 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~-------l~--~~~ 80 (374)
++.+|+++++ |..++|+|+||||||||+++|+|... .+|. .|++|+|.++|.++.. .. ..|
T Consensus 15 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~~---~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 88 (250)
T PRK14240 15 DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMND---LIPS---VKIEGEVLLDGQDIYKSDIDVNQLRKRVGM 88 (250)
T ss_pred CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccc---ccCC---CCCceEEEECCEEccccccchHHHhccEEE
Confidence 3468888885 55699999999999999999999821 0000 1268999999977532 11 146
Q ss_pred cCCCC-ccccchHhhHhhhhccccCCC-----C----------CC-------CCCceeEecC------------CCCCch
Q 017295 81 KPKSA-VPAFLEIHDIAGLVRGAHEGQ-----G----------AF-------EDPDIIHVDD------------SVDPVR 125 (374)
Q Consensus 81 ~~~~~-~~~~~~v~D~~gl~~~~~~~~-----~----------~~-------~~~~il~l~~------------~~dP~~ 125 (374)
.+|.. ++. .++.++..+........ . .+ .+..+..+++ +.+|
T Consensus 89 ~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p-- 165 (250)
T PRK14240 89 VFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEP-- 165 (250)
T ss_pred EecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCC--
Confidence 67664 333 67777776532111000 0 00 0111112222 5689
Q ss_pred hHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 126 DLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 126 ~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+++++|||++++|........+.+.+.. ++.+ |++..+..+||++ .+|++|+++..++
T Consensus 166 ~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~~~d~v-~~l~~G~i~~~~~ 228 (250)
T PRK14240 166 EVLLMDEPTSALDPISTLKIEELIQELK-KDYTIVIVTHNMQQASRISDKT-AFFLNGEIVEFGD 228 (250)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEEeCHHHHHhhCCEE-EEEECCEEEEeCC
Confidence 9999999999999999999999888775 3444 9999999999999 9999999886653
No 257
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.54 E-value=1.6e-15 Score=158.88 Aligned_cols=156 Identities=19% Similarity=0.225 Sum_probs=117.1
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhh-------hccCC
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPK 83 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~-------~~~~~ 83 (374)
..+|++++. |..|||||+||||||||+|+|+|. ..|..|.|.++|.++..+.. .|++|
T Consensus 486 ~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gl-----------y~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q 554 (709)
T COG2274 486 PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGL-----------YKPQQGRILLDGVDLNDIDLASLRRQVGYVLQ 554 (709)
T ss_pred cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCceEEECCEeHHhcCHHHHHhheeEEcc
Confidence 468888875 456999999999999999999999 89999999999998865432 58888
Q ss_pred CCccccchHhhHhhhhccccCCCC-----------CCCC------Cce-----eEecC------------CCCCchhHHH
Q 017295 84 SAVPAFLEIHDIAGLVRGAHEGQG-----------AFED------PDI-----IHVDD------------SVDPVRDLEV 129 (374)
Q Consensus 84 ~~~~~~~~v~D~~gl~~~~~~~~~-----------~~~~------~~i-----l~l~~------------~~dP~~~l~i 129 (374)
+.....-++.|+..+.......+. .|.. +.. ..+++ ..+| .+++
T Consensus 555 ~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P--~ILl 632 (709)
T COG2274 555 DPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKP--KILL 632 (709)
T ss_pred cchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCC--CEEE
Confidence 886666788888777533222111 0000 000 00111 5689 9999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 130 ISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 130 lde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
+||+++.+|..+.+...+.+.+.. .++| |.+.. ...||++ .+|++|+++.+|+.
T Consensus 633 LDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~t-i~~adrI-iVl~~Gkiv~~gs~ 691 (709)
T COG2274 633 LDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLST-IRSADRI-IVLDQGKIVEQGSH 691 (709)
T ss_pred EeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccchH-hhhccEE-EEccCCceeccCCH
Confidence 999999999999999899888766 4455 87765 4669999 99999999988754
No 258
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.54 E-value=1.1e-15 Score=142.66 Aligned_cols=155 Identities=15% Similarity=0.151 Sum_probs=110.7
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCc-----eeEEEeCCcchhh-------hh-
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN-----EARVNIPDERFEW-------LC- 77 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~-----~G~i~~~g~~~~~-------l~- 77 (374)
+.+|+++++ |..+||+|+||||||||+++|+|. .+|+ .|.|.++|.++.. ..
T Consensus 17 ~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~ 85 (251)
T PRK14249 17 HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRM-----------NDIVSGARLEGAVLLDNENIYSPNLDVVNLRK 85 (251)
T ss_pred eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------cCccccCCcccEEEECCEEccccccChHHhhc
Confidence 468888875 456999999999999999999999 5565 6999999876531 11
Q ss_pred -hhccCCCC-ccccchHhhHhhhhccccC---CCC------------CC-------CCCceeEecC------------CC
Q 017295 78 -QLFKPKSA-VPAFLEIHDIAGLVRGAHE---GQG------------AF-------EDPDIIHVDD------------SV 121 (374)
Q Consensus 78 -~~~~~~~~-~~~~~~v~D~~gl~~~~~~---~~~------------~~-------~~~~il~l~~------------~~ 121 (374)
..|.+|.. +++ .++.|++.+...... ... .+ .+.....+++ +.
T Consensus 86 ~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~ 164 (251)
T PRK14249 86 RVGMVFQQPNPFP-KSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAI 164 (251)
T ss_pred eEEEEecCCccCc-CcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhc
Confidence 24667765 333 377777655321110 000 00 1111222222 56
Q ss_pred CCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 122 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 122 dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+| +++++|||++++|........+.+.+.. ++.+ |++..+..+||++ .+|++|+++..++
T Consensus 165 ~p--~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~~~~~~~d~i-~~l~~G~i~~~~~ 229 (251)
T PRK14249 165 EP--EVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQQAARASDWT-GFLLTGDLVEYGR 229 (251)
T ss_pred CC--CEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhhCCEE-EEEeCCeEEEeCC
Confidence 89 9999999999999999999999888774 4444 9999999999999 8999999876654
No 259
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.54 E-value=1.6e-15 Score=156.06 Aligned_cols=157 Identities=15% Similarity=0.196 Sum_probs=111.9
Q ss_pred ccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCC-----ceeEEEeCCcchhhh---------
Q 017295 15 RPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP-----NEARVNIPDERFEWL--------- 76 (374)
Q Consensus 15 ~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p-----~~G~i~~~g~~~~~l--------- 76 (374)
+.+|+++++. ..+||+|+||||||||+++|+|. ++| ++|.|.++|.++...
T Consensus 22 ~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~-----------~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~ 90 (529)
T PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRL-----------LPSPPVVYPSGDIRFHGESLLHASEQTLRGVR 90 (529)
T ss_pred eeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcC-----------CCCCcCCccceEEEECCEecccCCHHHHHHHh
Confidence 5789999865 45999999999999999999999 554 799999999775321
Q ss_pred --hhhccCCCC---ccccchHhhHhhhhccccCCCC---------------CCC------CCceeEecC-----------
Q 017295 77 --CQLFKPKSA---VPAFLEIHDIAGLVRGAHEGQG---------------AFE------DPDIIHVDD----------- 119 (374)
Q Consensus 77 --~~~~~~~~~---~~~~~~v~D~~gl~~~~~~~~~---------------~~~------~~~il~l~~----------- 119 (374)
...|.+|.. +....++.+++.+......+.. .+. +..+-.+++
T Consensus 91 ~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAra 170 (529)
T PRK15134 91 GNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMA 170 (529)
T ss_pred cCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHH
Confidence 124666653 3333455554432111000000 111 122333443
Q ss_pred -CCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 120 -SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 120 -~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+.+| +++++|||++++|+.....+++.+.++.++ +.+ |+++.+..+||++ .+|++|+++..+.
T Consensus 171 L~~~p--~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri-~~l~~G~i~~~g~ 240 (529)
T PRK15134 171 LLTRP--ELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRV-AVMQNGRCVEQNR 240 (529)
T ss_pred HhcCC--CEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEE-EEEECCEEEEeCC
Confidence 6789 999999999999999999999999887654 444 9999999999999 9999999876543
No 260
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.54 E-value=1.1e-15 Score=140.40 Aligned_cols=153 Identities=20% Similarity=0.248 Sum_probs=108.0
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh-----h--hhccCC
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C--QLFKPK 83 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l-----~--~~~~~~ 83 (374)
+.+|+++++ |..++|+|+||||||||+++|+|. ..|++|.|.++|.++... . ..|.+|
T Consensus 16 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q 84 (229)
T cd03254 16 KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRF-----------YDPQKGQILIDGIDIRDISRKSLRSMIGVVLQ 84 (229)
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------cCCCCCEEEECCEeHHHcCHHHHhhhEEEecC
Confidence 458888875 456999999999999999999999 789999999999776431 1 246666
Q ss_pred CC-ccccchHhhHhhhhccccCCC---------C------CC-------CCCceeEecC------------CCCCchhHH
Q 017295 84 SA-VPAFLEIHDIAGLVRGAHEGQ---------G------AF-------EDPDIIHVDD------------SVDPVRDLE 128 (374)
Q Consensus 84 ~~-~~~~~~v~D~~gl~~~~~~~~---------~------~~-------~~~~il~l~~------------~~dP~~~l~ 128 (374)
.. ++. .++.|+..+........ + .+ ....+..+++ +.+| +++
T Consensus 85 ~~~~~~-~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p--~ll 161 (229)
T cd03254 85 DTFLFS-GTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDP--KIL 161 (229)
T ss_pred Cchhhh-hHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCC--CEE
Confidence 65 333 36666665432111000 0 00 0011112222 5789 999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceecc
Q 017295 129 VISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLG 184 (374)
Q Consensus 129 ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~ 184 (374)
++|||+.++|+...+.+++.+.+.. ++.+ |+...+. .||++ .+|++|+++..+
T Consensus 162 llDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~-~~d~i-~~l~~g~~~~~~ 219 (229)
T cd03254 162 ILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLSTIK-NADKI-LVLDDGKIIEEG 219 (229)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHh-hCCEE-EEEeCCeEEEeC
Confidence 9999999999999999999998775 4443 9988875 59999 899999987654
No 261
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.54 E-value=8.7e-16 Score=140.39 Aligned_cols=154 Identities=19% Similarity=0.204 Sum_probs=105.8
Q ss_pred ccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-------hhccCC
Q 017295 15 RPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPK 83 (374)
Q Consensus 15 ~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-------~~~~~~ 83 (374)
+.+|+++++. ..++|+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.+|
T Consensus 17 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q 85 (221)
T cd03244 17 PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRL-----------VELSSGSILIDGVDISKIGLHDLRSRISIIPQ 85 (221)
T ss_pred cccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcC-----------CCCCCCEEEECCEEhHhCCHHHHhhhEEEECC
Confidence 4689988865 45999999999999999999999 7899999999997764311 145666
Q ss_pred CCccccchHhhHhhhhccccC----------CCCCC-----------CCCceeEecC------------CCCCchhHHHH
Q 017295 84 SAVPAFLEIHDIAGLVRGAHE----------GQGAF-----------EDPDIIHVDD------------SVDPVRDLEVI 130 (374)
Q Consensus 84 ~~~~~~~~v~D~~gl~~~~~~----------~~~~~-----------~~~~il~l~~------------~~dP~~~l~il 130 (374)
.......++.|+..+...... +...+ .......++. +.+| +++++
T Consensus 86 ~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p--~llll 163 (221)
T cd03244 86 DPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKS--KILVL 163 (221)
T ss_pred CCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCC--CEEEE
Confidence 542222466665543211000 00000 0011122222 5688 99999
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceecc
Q 017295 131 SAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLG 184 (374)
Q Consensus 131 de~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~ 184 (374)
|||+.++|.......++.+.+..+ +.+ |+...+.. ||++ .+|++|+++..+
T Consensus 164 DEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~-~d~i-~~l~~g~~~~~~ 219 (221)
T cd03244 164 DEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLDTIID-SDRI-LVLDKGRVVEFD 219 (221)
T ss_pred eCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHHhh-CCEE-EEEECCeEEecC
Confidence 999999999999999999987653 333 99888765 8998 888888876543
No 262
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.54 E-value=2e-15 Score=140.40 Aligned_cols=137 Identities=17% Similarity=0.263 Sum_probs=95.1
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCC-ccccchHhhHhhhhc
Q 017295 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSA-VPAFLEIHDIAGLVR 100 (374)
Q Consensus 22 ~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~-~~~~~~v~D~~gl~~ 100 (374)
..|..+||+|+||||||||+++|+|. ..|++|.|.++|..+. |.+|.. .....++.|++....
T Consensus 23 ~~Ge~~~i~G~NGsGKSTLlk~L~G~-----------~~p~~G~i~~~g~~i~-----~~~q~~~~~~~~tv~e~l~~~~ 86 (246)
T cd03237 23 SESEVIGILGPNGIGKTTFIKMLAGV-----------LKPDEGDIEIELDTVS-----YKPQYIKADYEGTVRDLLSSIT 86 (246)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC-----------CcCCCCeEEECCceEE-----EecccccCCCCCCHHHHHHHHh
Confidence 35667999999999999999999999 8899999999886443 344443 223355666553321
Q ss_pred cccCC-----------CC--CCCCCceeEecC------------CCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHc
Q 017295 101 GAHEG-----------QG--AFEDPDIIHVDD------------SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKR 155 (374)
Q Consensus 101 ~~~~~-----------~~--~~~~~~il~l~~------------~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~ 155 (374)
..... .+ ...+..+-.+++ +.+| +++++|||++.+|+.......+.+.+..++
T Consensus 87 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p--~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 164 (246)
T cd03237 87 KDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDA--DIYLLDEPSAYLDVEQRLMASKVIRRFAEN 164 (246)
T ss_pred hhccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCC--CEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 10000 00 001111122222 5688 999999999999999999999999887654
Q ss_pred -cCc-----cchHHHHHHHHHHHHHHhC
Q 017295 156 -SND-----KQLKIEHELCQRVKAWLQD 177 (374)
Q Consensus 156 -~~~-----H~~~~~~~~~d~v~~~L~~ 177 (374)
+.+ |++..+..+||++ .+|+.
T Consensus 165 ~~~tiiivsHd~~~~~~~~d~i-~~l~~ 191 (246)
T cd03237 165 NEKTAFVVEHDIIMIDYLADRL-IVFEG 191 (246)
T ss_pred cCCEEEEEeCCHHHHHHhCCEE-EEEcC
Confidence 443 9999999999998 66754
No 263
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.54 E-value=1.3e-15 Score=144.87 Aligned_cols=155 Identities=12% Similarity=0.149 Sum_probs=109.8
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccC-----CceeEEEeCCcchhh-------hh-
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE-----PNEARVNIPDERFEW-------LC- 77 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~-----p~~G~i~~~g~~~~~-------l~- 77 (374)
+.+|+++++ |..++|+|+||||||||+++|+|+ .. |+.|.|.++|.++.. ..
T Consensus 52 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl-----------~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~ 120 (286)
T PRK14275 52 FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRM-----------NDLIPSCHTTGALMFDGEDIYGKFTDEVLLRK 120 (286)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------cccCCCCCCceEEEECCEEhhhcccchHHhhh
Confidence 457887765 456999999999999999999997 32 489999999976532 11
Q ss_pred -hhccCCCC-ccccchHhhHhhhhccccC--CCC-------------CC-------CCCceeEecC------------CC
Q 017295 78 -QLFKPKSA-VPAFLEIHDIAGLVRGAHE--GQG-------------AF-------EDPDIIHVDD------------SV 121 (374)
Q Consensus 78 -~~~~~~~~-~~~~~~v~D~~gl~~~~~~--~~~-------------~~-------~~~~il~l~~------------~~ 121 (374)
..|.+|.. ++. .++.|++.+...... ... .+ .+..+..+++ +.
T Consensus 121 ~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~ 199 (286)
T PRK14275 121 KIGMVFQKPNPFP-KSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAV 199 (286)
T ss_pred cEEEECCCCCCCc-cCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 14667765 333 377777765321100 000 00 0111222222 56
Q ss_pred CCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 122 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 122 dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+| +++++|||+.++|........+.+.+... +.+ |+...+..+||++ .+|++|+++..++
T Consensus 200 ~p--~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~~~~~~~d~i-~~L~~G~i~~~g~ 264 (286)
T PRK14275 200 EP--EILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQQASRVSDYT-MFFYEGVLVEHAP 264 (286)
T ss_pred CC--CEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 89 99999999999999999999999887753 333 9999999999999 8999999886654
No 264
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.54 E-value=9.8e-16 Score=154.18 Aligned_cols=153 Identities=23% Similarity=0.341 Sum_probs=105.9
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccc
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFL 90 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~ 90 (374)
+.+|+++++ |..+||+|+||||||||+++|+|. ..|++|.|.++|.... .. +. ..+...+
T Consensus 37 ~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGL-----------l~P~sGeI~I~G~~~~-i~--~~--~~l~~~l 100 (549)
T PRK13545 37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGV-----------TMPNKGTVDIKGSAAL-IA--IS--SGLNGQL 100 (549)
T ss_pred ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEeee-EE--ec--cccCCCC
Confidence 468998875 456999999999999999999999 8899999999886421 00 00 0122234
Q ss_pred hHhhHhhhhccccC-----------------CCCCCCCCceeEecC------------CCCCchhHHHHHHHHHhhcHHH
Q 017295 91 EIHDIAGLVRGAHE-----------------GQGAFEDPDIIHVDD------------SVDPVRDLEVISAELRLKDIEF 141 (374)
Q Consensus 91 ~v~D~~gl~~~~~~-----------------~~~~~~~~~il~l~~------------~~dP~~~l~ilde~l~~~D~~~ 141 (374)
++.+++.+...... +...+.+..+..+++ +.+| +++++|||++++|+..
T Consensus 101 TV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P--~LLLLDEPTsgLD~~s 178 (549)
T PRK13545 101 TGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINP--DILVIDEALSVGDQTF 178 (549)
T ss_pred cHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCC--CEEEEECCcccCCHHH
Confidence 55554433110000 000011122222332 5688 9999999999999999
Q ss_pred HHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 142 MERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 142 ~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
...+++.+.+..+++.+ |++..+..+||++ .+|++|+++..++.
T Consensus 179 r~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrI-ivL~~GkIv~~G~~ 227 (549)
T PRK13545 179 TKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKA-LWLHYGQVKEYGDI 227 (549)
T ss_pred HHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEE-EEEECCEEEEECCH
Confidence 99999999887655554 9999999999999 89999998876543
No 265
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.53 E-value=8.3e-16 Score=143.46 Aligned_cols=153 Identities=17% Similarity=0.219 Sum_probs=102.3
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCC-ccc
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSA-VPA 88 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~-~~~ 88 (374)
++.+|+++++ |..++|+|+||||||||+++|+|. .+|++|.|.+++.. ...|.+|.. ++.
T Consensus 16 ~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl-----------~~p~~G~i~~~~~~----~i~~v~q~~~~~~ 80 (251)
T PRK09544 16 QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGL-----------VAPDEGVIKRNGKL----RIGYVPQKLYLDT 80 (251)
T ss_pred CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCcc----CEEEecccccccc
Confidence 3468888876 456999999999999999999999 78999999998732 123444443 222
Q ss_pred c--chHhhHhhhhccccC----------CCCCCCCCceeEecC------------CCCCchhHHHHHHHHHhhcHHHHHH
Q 017295 89 F--LEIHDIAGLVRGAHE----------GQGAFEDPDIIHVDD------------SVDPVRDLEVISAELRLKDIEFMER 144 (374)
Q Consensus 89 ~--~~v~D~~gl~~~~~~----------~~~~~~~~~il~l~~------------~~dP~~~l~ilde~l~~~D~~~~~~ 144 (374)
. .++.++..+...... +.....+..+..+++ +.+| +++++|||++++|+.....
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p--~lllLDEPt~~LD~~~~~~ 158 (251)
T PRK09544 81 TLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRP--QLLVLDEPTQGVDVNGQVA 158 (251)
T ss_pred ccChhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCC--CEEEEeCCCcCCCHHHHHH
Confidence 2 234333222110000 000001111222222 5688 9999999999999999999
Q ss_pred HHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 145 RIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 145 ~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
.++.+.+..++ +.+ |+...+..+||++ .+|+ ++++..++
T Consensus 159 l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i-~~l~-~~i~~~g~ 203 (251)
T PRK09544 159 LYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEV-LCLN-HHICCSGT 203 (251)
T ss_pred HHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEE-EEEC-CceEeeCC
Confidence 99999887654 443 9999999999999 7775 46665543
No 266
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.53 E-value=7.3e-14 Score=121.49 Aligned_cols=59 Identities=37% Similarity=0.701 Sum_probs=51.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhc
Q 017295 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~ 100 (374)
.|+|||++|||||||+|+|++....++++||+|.+|+.|.+.+.+. ..+.++|+||+..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~----------------~~~~l~DtpG~~~ 60 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG----------------RSFVVADIPGLIE 60 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC----------------CeEEEEecCcccC
Confidence 4899999999999999999998887899999999999999887653 1278899999753
No 267
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.53 E-value=2.5e-15 Score=153.67 Aligned_cols=157 Identities=10% Similarity=0.108 Sum_probs=114.7
Q ss_pred ccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh--------hhhccCCC
Q 017295 17 ILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------CQLFKPKS 84 (374)
Q Consensus 17 vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l--------~~~~~~~~ 84 (374)
+|+++++ |..+||+|+||||||||+++|+|. ..|++|.|.++|.++... ...|.+|.
T Consensus 267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~-----------~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~ 335 (501)
T PRK10762 267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGA-----------LPRTSGYVTLDGHEVVTRSPQDGLANGIVYISED 335 (501)
T ss_pred CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEECCCCCHHHHHHCCCEEecCc
Confidence 5777765 456999999999999999999999 789999999999765321 12566776
Q ss_pred C----ccccchHhhHhhhhcc--ccC--C-----C---C--------CC----CCCceeEecC------------CCCCc
Q 017295 85 A----VPAFLEIHDIAGLVRG--AHE--G-----Q---G--------AF----EDPDIIHVDD------------SVDPV 124 (374)
Q Consensus 85 ~----~~~~~~v~D~~gl~~~--~~~--~-----~---~--------~~----~~~~il~l~~------------~~dP~ 124 (374)
. ++..+++.+++.+... ... + . . .+ .+..+-.+++ +.+|
T Consensus 336 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p- 414 (501)
T PRK10762 336 RKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRP- 414 (501)
T ss_pred cccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCC-
Confidence 2 4455677776654210 000 0 0 0 11 1222333333 5689
Q ss_pred hhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCCC
Q 017295 125 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 187 (374)
Q Consensus 125 ~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~~ 187 (374)
+++++|||++++|+.......+.+.++.+++.+ |++..+..+||++ .+|++|+++..++..
T Consensus 415 -~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v-~~l~~G~i~~~~~~~ 480 (501)
T PRK10762 415 -KVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRI-LVMHEGRISGEFTRE 480 (501)
T ss_pred -CEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEE-EEEECCEEEEEeccc
Confidence 999999999999999999999999988765554 9999999999999 899999988665443
No 268
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.53 E-value=1.3e-15 Score=141.84 Aligned_cols=156 Identities=16% Similarity=0.169 Sum_probs=110.9
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCC-----ceeEEEeCCcchhh------hh-
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP-----NEARVNIPDERFEW------LC- 77 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p-----~~G~i~~~g~~~~~------l~- 77 (374)
++.+|+++++. ..++|+|+||||||||+++|+|. .+| ++|.|.++|.++.. ..
T Consensus 15 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~ 83 (249)
T PRK14253 15 ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRM-----------NDLIEGVKITGKLTMDGEDIYGNIDVADLRI 83 (249)
T ss_pred CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhh-----------cccccCCCCceEEEECCEEcccccchHHHHh
Confidence 35688888864 56999999999999999999998 443 68999999976531 11
Q ss_pred -hhccCCCC-ccccchHhhHhhhhccccC-C-CC-------------CC-------CCCceeEecC------------CC
Q 017295 78 -QLFKPKSA-VPAFLEIHDIAGLVRGAHE-G-QG-------------AF-------EDPDIIHVDD------------SV 121 (374)
Q Consensus 78 -~~~~~~~~-~~~~~~v~D~~gl~~~~~~-~-~~-------------~~-------~~~~il~l~~------------~~ 121 (374)
..|.+|.. ++. .++.|++.+...... . .. .+ .+.....+++ +.
T Consensus 84 ~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 162 (249)
T PRK14253 84 KVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAM 162 (249)
T ss_pred heeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHc
Confidence 24667765 333 677777654321110 0 00 00 0011112222 56
Q ss_pred CCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 122 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 122 dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+| +++++|||+.++|......+++.+.+..+ +.+ |+...+..+||++ .+|++|+++..++
T Consensus 163 ~p--~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~~d~i-~~l~~G~i~~~g~ 227 (249)
T PRK14253 163 EP--DVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQQARRISDRT-AFFLMGELVEHDD 227 (249)
T ss_pred CC--CEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 89 99999999999999999999999988764 344 9999999999999 9999999886553
No 269
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.53 E-value=4.5e-15 Score=145.22 Aligned_cols=157 Identities=24% Similarity=0.277 Sum_probs=102.7
Q ss_pred cccCCceEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhh
Q 017295 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (374)
Q Consensus 20 ~i~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~-s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl 98 (374)
.+..|.+++|+|+||+|||||||+|++.+.++ ++.||||++.....+.++|.+ +.+.||+|+
T Consensus 213 ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~p-----------------v~l~DTAGi 275 (454)
T COG0486 213 ILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIP-----------------VRLVDTAGI 275 (454)
T ss_pred hhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEE-----------------EEEEecCCc
Confidence 35678899999999999999999999999987 999999999999999999976 789999999
Q ss_pred hccccCCCCCCCCCceeEecCCCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCccchHHHHHHHHHHHHHHhCC
Q 017295 99 VRGAHEGQGAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDG 178 (374)
Q Consensus 99 ~~~~~~~~~~~~~~~il~l~~~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~H~~~~~~~~~d~v~~~L~~G 178 (374)
-... |. +. .. .+++-++ ...-+|.|..+++..
T Consensus 276 Ret~-------------------d~---VE-------~i---GIeRs~~----------------~i~~ADlvL~v~D~~ 307 (454)
T COG0486 276 RETD-------------------DV---VE-------RI---GIERAKK----------------AIEEADLVLFVLDAS 307 (454)
T ss_pred ccCc-------------------cH---HH-------HH---HHHHHHH----------------HHHhCCEEEEEEeCC
Confidence 4211 11 00 00 0111111 112234331222211
Q ss_pred CceeccCCChhHHHHHHhccccccCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCCChh
Q 017295 179 KDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADMPPD 256 (374)
Q Consensus 179 ~iv~~~~~~~~~~~~l~~~~~~~~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l~~~ 256 (374)
.+++.++...+. .....+|+++|+||.|. ... .....+ + ...+.+++.+||+++.+|..|..+
T Consensus 308 -----~~~~~~d~~~~~--~~~~~~~~i~v~NK~DL--~~~--~~~~~~-~---~~~~~~~i~iSa~t~~Gl~~L~~~ 370 (454)
T COG0486 308 -----QPLDKEDLALIE--LLPKKKPIIVVLNKADL--VSK--IELESE-K---LANGDAIISISAKTGEGLDALREA 370 (454)
T ss_pred -----CCCchhhHHHHH--hcccCCCEEEEEechhc--ccc--cccchh-h---ccCCCceEEEEecCccCHHHHHHH
Confidence 224555555555 23457999999999963 221 111222 1 112457999999999998888544
No 270
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.53 E-value=1.6e-15 Score=139.10 Aligned_cols=149 Identities=13% Similarity=0.116 Sum_probs=102.3
Q ss_pred ccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-------hhccCC
Q 017295 15 RPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPK 83 (374)
Q Consensus 15 ~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-------~~~~~~ 83 (374)
+.+|+++++. ..++|+|+||||||||+++|+|. .+|++|.|.++|.++.... ..|.+|
T Consensus 27 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q 95 (226)
T cd03248 27 TLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENF-----------YQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQ 95 (226)
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------cCCCCcEEEECCCchHHcCHHHHHhhEEEEec
Confidence 4688888764 45999999999999999999999 7899999999998764321 145566
Q ss_pred CCccccchHhhHhhhhccccC----------------------CCCCCCCCceeEecC------------CCCCchhHHH
Q 017295 84 SAVPAFLEIHDIAGLVRGAHE----------------------GQGAFEDPDIIHVDD------------SVDPVRDLEV 129 (374)
Q Consensus 84 ~~~~~~~~v~D~~gl~~~~~~----------------------~~~~~~~~~il~l~~------------~~dP~~~l~i 129 (374)
.......++.|+..+...... +.....+..+..+++ +.+| ++++
T Consensus 96 ~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p--~lll 173 (226)
T cd03248 96 EPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNP--QVLI 173 (226)
T ss_pred ccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCC--CEEE
Confidence 542112466666643211000 000001111122222 5789 9999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCC
Q 017295 130 ISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGK 179 (374)
Q Consensus 130 lde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~ 179 (374)
+|||+.++|+.....+.+.+.+..+ +.+ |+...+. .||++ .+|++|+
T Consensus 174 lDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~-~~d~i-~~l~~g~ 225 (226)
T cd03248 174 LDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLSTVE-RADQI-LVLDGGR 225 (226)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHHHHH-hCCEE-EEecCCc
Confidence 9999999999999999999887653 333 9988875 48988 7777765
No 271
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.53 E-value=2.5e-15 Score=154.03 Aligned_cols=156 Identities=12% Similarity=0.117 Sum_probs=111.8
Q ss_pred ccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh--------hhhccCCC
Q 017295 17 ILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------CQLFKPKS 84 (374)
Q Consensus 17 vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l--------~~~~~~~~ 84 (374)
+|+++++. ..+||+|+||||||||+++|+|. ..|++|.|.++|.++... ...|.+|.
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl-----------~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~ 346 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGL-----------RPARGGRIMLNGKEINALSTAQRLARGLVYLPED 346 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCC-----------CCCCCcEEEECCEECCCCCHHHHHhCCcEECCCC
Confidence 57777654 55999999999999999999999 789999999998765321 12466665
Q ss_pred C----ccccchHhhHhhhh-----ccc-cCC-CC----------CC----CCCceeEecC------------CCCCchhH
Q 017295 85 A----VPAFLEIHDIAGLV-----RGA-HEG-QG----------AF----EDPDIIHVDD------------SVDPVRDL 127 (374)
Q Consensus 85 ~----~~~~~~v~D~~gl~-----~~~-~~~-~~----------~~----~~~~il~l~~------------~~dP~~~l 127 (374)
. ++..+++.++.... ... ... .. .+ .+..+-.+++ +.+| ++
T Consensus 347 ~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p--~l 424 (510)
T PRK15439 347 RQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASP--QL 424 (510)
T ss_pred hhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCC--CE
Confidence 2 44445665554211 000 000 00 11 1223334444 5689 99
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 128 EVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 128 ~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
+++|||++++|+.....+++.+.++.+++.+ |++..+..+||++ .+|++|+++..+..
T Consensus 425 LlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i-~~l~~G~i~~~~~~ 487 (510)
T PRK15439 425 LIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRV-LVMHQGEISGALTG 487 (510)
T ss_pred EEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEE-EEEECCEEEEEEcc
Confidence 9999999999999999999999888765554 9999999999999 89999998866543
No 272
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.53 E-value=3e-15 Score=153.52 Aligned_cols=155 Identities=14% Similarity=0.197 Sum_probs=114.5
Q ss_pred cccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhh------h--hhhccCC
Q 017295 16 PILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW------L--CQLFKPK 83 (374)
Q Consensus 16 ~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~------l--~~~~~~~ 83 (374)
.+|+++++ |..+||+|+||||||||+++|+|. ..|++|.|.++|.++.. . ...|.+|
T Consensus 277 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl-----------~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q 345 (510)
T PRK09700 277 KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGV-----------DKRAGGEIRLNGKDISPRSPLDAVKKGMAYITE 345 (510)
T ss_pred CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CcCCCCeEEECCEECCCCCHHHHHHCCcEEccC
Confidence 47888775 456999999999999999999999 78999999999876532 1 1246777
Q ss_pred C----CccccchHhhHhhhhcccc----C---C---CC-------------CC----CCCceeEecC------------C
Q 017295 84 S----AVPAFLEIHDIAGLVRGAH----E---G---QG-------------AF----EDPDIIHVDD------------S 120 (374)
Q Consensus 84 ~----~~~~~~~v~D~~gl~~~~~----~---~---~~-------------~~----~~~~il~l~~------------~ 120 (374)
. .+++.+++.++..+..... . + .. .+ .+..+-.+++ +
T Consensus 346 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~ 425 (510)
T PRK09700 346 SRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLC 425 (510)
T ss_pred ccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHh
Confidence 5 2555678888765432100 0 0 00 11 1222333443 5
Q ss_pred CCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceecc
Q 017295 121 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLG 184 (374)
Q Consensus 121 ~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~ 184 (374)
.+| +++++|||++++|+......++.+.++.+++.+ |++..+..+||++ .+|++|+++..+
T Consensus 426 ~~p--~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i-~~l~~G~i~~~~ 491 (510)
T PRK09700 426 CCP--EVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRI-AVFCEGRLTQIL 491 (510)
T ss_pred cCC--CEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEE-EEEECCEEEEEe
Confidence 789 999999999999999999999999887755554 9999999999999 889999987654
No 273
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.53 E-value=2.8e-15 Score=150.36 Aligned_cols=158 Identities=22% Similarity=0.330 Sum_probs=117.1
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcch-------hhhh---h-
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF-------EWLC---Q- 78 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~-------~~l~---~- 78 (374)
...++++|++. +.+||||.+|||||||.++|+|+ ..|+.|.|.++|.++ ..+. +
T Consensus 303 ~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL-----------~~P~~G~i~~~g~~~~~~~~~~~~~r~~~Qm 371 (539)
T COG1123 303 EVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGL-----------LPPSSGSIIFDGQDLDLTGGELRRLRRRIQM 371 (539)
T ss_pred ceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEEeCcccccccchhhhhhhheEE
Confidence 45778888864 56999999999999999999999 889999999988762 1111 1
Q ss_pred hcc-CCCCccccchHhhHhhhhccccCCCC-------------------CCCCCceeEecC------------CCCCchh
Q 017295 79 LFK-PKSAVPAFLEIHDIAGLVRGAHEGQG-------------------AFEDPDIIHVDD------------SVDPVRD 126 (374)
Q Consensus 79 ~~~-~~~~~~~~~~v~D~~gl~~~~~~~~~-------------------~~~~~~il~l~~------------~~dP~~~ 126 (374)
+|+ |...+.+.+++.++..-.-..+.... .+.+...-.+++ +.+| +
T Consensus 372 vFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P--~ 449 (539)
T COG1123 372 VFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEP--K 449 (539)
T ss_pred EEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCC--C
Confidence 233 33346677777776654332222110 111112222333 6789 9
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHccC-c-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 127 LEVISAELRLKDIEFMERRIEDVEKSMKRSN-D-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 127 l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~-~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
++++|||++.+|+.......+.+.++.++.+ + ||+..+..+||+| .+|..|+++..|+
T Consensus 450 lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv-~vm~~G~iVE~G~ 513 (539)
T COG1123 450 LLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRV-AVMYDGRIVEEGP 513 (539)
T ss_pred EEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceE-EEEECCeEEEeCC
Confidence 9999999999999999999999998887644 3 9999999999999 9999999998873
No 274
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.53 E-value=2e-15 Score=140.40 Aligned_cols=160 Identities=16% Similarity=0.133 Sum_probs=105.3
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCccc--CCceeEEEeCCcchhhhh--------hh
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTI--EPNEARVNIPDERFEWLC--------QL 79 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~--~p~~G~i~~~g~~~~~l~--------~~ 79 (374)
++.+|+++++. ..++|+|+||||||||+++|+|. + .|++|.|.++|.++.... ..
T Consensus 13 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (248)
T PRK09580 13 DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGR-----------EDYEVTGGTVEFKGKDLLELSPEDRAGEGIF 81 (248)
T ss_pred CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCC-----------ccCCCCceEEEECCCccccCCHHHHhhcceE
Confidence 35688987754 56999999999999999999998 4 489999999997653211 13
Q ss_pred ccCCCC-ccccchHhhHhhhhc-c---ccC----CC-C------------CC----CCCcee-EecC------------C
Q 017295 80 FKPKSA-VPAFLEIHDIAGLVR-G---AHE----GQ-G------------AF----EDPDII-HVDD------------S 120 (374)
Q Consensus 80 ~~~~~~-~~~~~~v~D~~gl~~-~---~~~----~~-~------------~~----~~~~il-~l~~------------~ 120 (374)
|.+|.. .++.++...+..... . ... .. . .+ .+..+. .+++ +
T Consensus 82 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~ 161 (248)
T PRK09580 82 MAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAV 161 (248)
T ss_pred EEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHH
Confidence 445443 222222221111100 0 000 00 0 00 011111 2333 5
Q ss_pred CCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHH-HHHHHHHHhCCCceeccCCC
Q 017295 121 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHEL-CQRVKAWLQDGKDVRLGDWK 187 (374)
Q Consensus 121 ~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~-~d~v~~~L~~G~iv~~~~~~ 187 (374)
.+| +++++|||++++|........+.+..+.+.+.+ |+...+... +|++ .+|++|+++..++.+
T Consensus 162 ~~p--~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i-~~l~~g~i~~~g~~~ 231 (248)
T PRK09580 162 LEP--ELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYV-HVLYQGRIVKSGDFT 231 (248)
T ss_pred cCC--CEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEE-EEEECCeEEEeCCHH
Confidence 689 999999999999999999999988877655544 999888877 7988 888999988766443
No 275
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.53 E-value=1.5e-14 Score=124.19 Aligned_cols=155 Identities=14% Similarity=0.187 Sum_probs=109.5
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-----h--hccCCCC-ccccc
Q 017295 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----Q--LFKPKSA-VPAFL 90 (374)
Q Consensus 19 ~~i~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-----~--~~~~~~~-~~~~~ 90 (374)
..++.|+.+-+|||||||||||+..|+|. -|-+|.|.+.|.++...+ + .|..|.. .++.+
T Consensus 20 ~qv~aGe~~HliGPNGaGKSTLLA~lAGm------------~~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~m 87 (248)
T COG4138 20 GEVRAGEILHLVGPNGAGKSTLLARMAGM------------TSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAM 87 (248)
T ss_pred cccccceEEEEECCCCccHHHHHHHHhCC------------CCCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchh
Confidence 45677888999999999999999999998 478999999999875422 1 2433332 22223
Q ss_pred hHhhHhhhhc---------------------------cccCCCC--CCCCCceeEecCCCCCchhHHHHHHHHHhhcHHH
Q 017295 91 EIHDIAGLVR---------------------------GAHEGQG--AFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEF 141 (374)
Q Consensus 91 ~v~D~~gl~~---------------------------~~~~~~~--~~~~~~il~l~~~~dP~~~l~ilde~l~~~D~~~ 141 (374)
.|..+..+.. ..++|+. ......++.+.-..||...++++|||.+.+|+..
T Consensus 88 pV~~YL~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ 167 (248)
T COG4138 88 PVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQ 167 (248)
T ss_pred hhhhhhhhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHH
Confidence 3333222211 1122222 1122334455556799999999999999999998
Q ss_pred HHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 142 MERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 142 ~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
.......+......|.+ ||++..++.+|++ .+|..|++...|..
T Consensus 168 ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~-wLL~rG~l~~~G~~ 216 (248)
T COG4138 168 QSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRA-WLLKRGKLLASGRR 216 (248)
T ss_pred HHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHH-HHHhcCeEEeecch
Confidence 77766677777766544 9999999999999 99999999887653
No 276
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.53 E-value=5e-15 Score=133.89 Aligned_cols=140 Identities=16% Similarity=0.153 Sum_probs=97.1
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh------hhccCC
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC------QLFKPK 83 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~------~~~~~~ 83 (374)
.+.+|+++++. ..+||+|+||||||||+++|+|. .+|++|.|.++|.++.... ..|.++
T Consensus 13 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-----------~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~ 81 (204)
T PRK13538 13 ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGL-----------ARPDAGEVLWQGEPIRRQRDEYHQDLLYLGH 81 (204)
T ss_pred CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEEcccchHHhhhheEEeCC
Confidence 34688888764 46999999999999999999999 7899999999997653211 135555
Q ss_pred CC-ccccchHhhHhhhhccccCCCC--------------CCCCCceeEecC------------CCCCchhHHHHHHHHHh
Q 017295 84 SA-VPAFLEIHDIAGLVRGAHEGQG--------------AFEDPDIIHVDD------------SVDPVRDLEVISAELRL 136 (374)
Q Consensus 84 ~~-~~~~~~v~D~~gl~~~~~~~~~--------------~~~~~~il~l~~------------~~dP~~~l~ilde~l~~ 136 (374)
.. +++.+++.|+..+....+.... .+.+..+..+++ +.+| +++++|||+.+
T Consensus 82 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p--~llllDEPt~~ 159 (204)
T PRK13538 82 QPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRA--PLWILDEPFTA 159 (204)
T ss_pred ccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCC--CEEEEeCCCcc
Confidence 54 4555678777765432211000 011112222222 5789 99999999999
Q ss_pred hcHHHHHHHHHHHHHHHHccCc-----cchHHHHH
Q 017295 137 KDIEFMERRIEDVEKSMKRSND-----KQLKIEHE 166 (374)
Q Consensus 137 ~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~ 166 (374)
+|+...+..++.+.+..+++.+ |+...+..
T Consensus 160 LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~ 194 (204)
T PRK13538 160 IDKQGVARLEALLAQHAEQGGMVILTTHQDLPVAS 194 (204)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhcc
Confidence 9999999999988877654444 87766544
No 277
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.53 E-value=2.5e-15 Score=140.09 Aligned_cols=161 Identities=19% Similarity=0.151 Sum_probs=108.8
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh--------hhcc
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC--------QLFK 81 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~--------~~~~ 81 (374)
++.+|+++++. ..+||+|+||||||||+++|+|... .+|+.|.|.++|.++.... ..|.
T Consensus 19 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 89 (252)
T CHL00131 19 ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPA---------YKILEGDILFKGESILDLEPEERAHLGIFLA 89 (252)
T ss_pred CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCc---------CcCCCceEEECCEEcccCChhhhheeeEEEE
Confidence 34689888764 5699999999999999999999711 3589999999987654321 1234
Q ss_pred CCCC-ccccchHhhHhhhhccc-------cC-CC-----C--------CC----CCCcee-EecC------------CCC
Q 017295 82 PKSA-VPAFLEIHDIAGLVRGA-------HE-GQ-----G--------AF----EDPDII-HVDD------------SVD 122 (374)
Q Consensus 82 ~~~~-~~~~~~v~D~~gl~~~~-------~~-~~-----~--------~~----~~~~il-~l~~------------~~d 122 (374)
+|.. .++.+++.++..+.... .. .. . .+ .+..+. .+++ +.+
T Consensus 90 ~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~ 169 (252)
T CHL00131 90 FQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLD 169 (252)
T ss_pred eccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcC
Confidence 4443 33333444443221100 00 00 0 01 111122 1443 568
Q ss_pred CchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHH-HHHHHHHHhCCCceeccCC
Q 017295 123 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHEL-CQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 123 P~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~-~d~v~~~L~~G~iv~~~~~ 186 (374)
| +++++|||++++|.......++.+.+..+++.+ |+...+..+ ||++ .+|++|+++..++.
T Consensus 170 p--~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i-~~l~~G~i~~~~~~ 236 (252)
T CHL00131 170 S--ELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYV-HVMQNGKIIKTGDA 236 (252)
T ss_pred C--CEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEE-EEEeCCEEEEecCh
Confidence 9 999999999999999999999999887655554 999888776 8999 88999999876644
No 278
>COG2262 HflX GTPases [General function prediction only]
Probab=99.53 E-value=3.7e-14 Score=136.63 Aligned_cols=83 Identities=33% Similarity=0.498 Sum_probs=66.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhccccC
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~~~~~ 104 (374)
..|+|||-.|||||||||+|||..+.+.|..|+|++|+.-.+.++|-. .+-+.|++||+.....
T Consensus 193 p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~----------------~vlLtDTVGFI~~LP~ 256 (411)
T COG2262 193 PLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGR----------------KVLLTDTVGFIRDLPH 256 (411)
T ss_pred CeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCc----------------eEEEecCccCcccCCh
Confidence 349999999999999999999999999999999999999999987521 2667888888765432
Q ss_pred CCC---------CCCCCceeEecCCCCC
Q 017295 105 GQG---------AFEDPDIIHVDDSVDP 123 (374)
Q Consensus 105 ~~~---------~~~~~~il~l~~~~dP 123 (374)
..- ....+.++|+.|+.||
T Consensus 257 ~LV~AFksTLEE~~~aDlllhVVDaSdp 284 (411)
T COG2262 257 PLVEAFKSTLEEVKEADLLLHVVDASDP 284 (411)
T ss_pred HHHHHHHHHHHHhhcCCEEEEEeecCCh
Confidence 211 3455778888888888
No 279
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.53 E-value=2.2e-15 Score=154.76 Aligned_cols=159 Identities=16% Similarity=0.119 Sum_probs=111.5
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCccc--CCceeEEEeC------------------
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTI--EPNEARVNIP------------------ 69 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~--~p~~G~i~~~------------------ 69 (374)
++.+|+++++ |..+||+|+||||||||+++|+|. + .|++|.|.++
T Consensus 12 ~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl-----------~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~ 80 (520)
T TIGR03269 12 GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGM-----------DQYEPTSGRIIYHVALCEKCGYVERPSKVGE 80 (520)
T ss_pred CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhc-----------ccCCCCceEEEEecccccccccccccccccc
Confidence 3568888876 456999999999999999999998 5 5899999886
Q ss_pred -----Ccch-------h--------hhh--hhccCCC--CccccchHhhHhhhhccccCCC------C-----------C
Q 017295 70 -----DERF-------E--------WLC--QLFKPKS--AVPAFLEIHDIAGLVRGAHEGQ------G-----------A 108 (374)
Q Consensus 70 -----g~~~-------~--------~l~--~~~~~~~--~~~~~~~v~D~~gl~~~~~~~~------~-----------~ 108 (374)
|..+ . ... ..|.+|. .++..+++.+++.+........ . .
T Consensus 81 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~ 160 (520)
T TIGR03269 81 PCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSH 160 (520)
T ss_pred ccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh
Confidence 2111 0 001 1455664 2444567777765432111000 0 1
Q ss_pred CCCCceeEecC------------CCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHH
Q 017295 109 FEDPDIIHVDD------------SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQR 170 (374)
Q Consensus 109 ~~~~~il~l~~------------~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~ 170 (374)
+.+..+-.+++ +.+| +++++|||++++|+.....+++.+.++.++ +.+ |+...+..+||+
T Consensus 161 ~~~~~~~~LSgGq~qrv~iA~al~~~p--~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~ 238 (520)
T TIGR03269 161 RITHIARDLSGGEKQRVVLARQLAKEP--FLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDK 238 (520)
T ss_pred hhhcCcccCCHHHHHHHHHHHHHhcCC--CEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCE
Confidence 11222333443 5789 999999999999999999999999887654 444 999999999999
Q ss_pred HHHHHhCCCceeccCC
Q 017295 171 VKAWLQDGKDVRLGDW 186 (374)
Q Consensus 171 v~~~L~~G~iv~~~~~ 186 (374)
+ .+|++|+++..++.
T Consensus 239 i-~~l~~G~i~~~g~~ 253 (520)
T TIGR03269 239 A-IWLENGEIKEEGTP 253 (520)
T ss_pred E-EEEeCCEEeeecCH
Confidence 9 99999998865543
No 280
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.53 E-value=1.7e-15 Score=142.23 Aligned_cols=157 Identities=14% Similarity=0.146 Sum_probs=111.1
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCC-----ceeEEEeCCcchhh-------hh
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP-----NEARVNIPDERFEW-------LC 77 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p-----~~G~i~~~g~~~~~-------l~ 77 (374)
++.+|+++++ |..+||+|+||||||||+++|+|. ..| ++|.|.++|.++.. ..
T Consensus 20 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 88 (261)
T PRK14263 20 NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRM-----------NDLVKGFRFEGHVHFLGQDVYGKGVDPVVVR 88 (261)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcc-----------cccccCCCCceEEEECCEeccccccchHhhh
Confidence 4568888876 455999999999999999999999 544 78999999987532 11
Q ss_pred --hhccCCCCccccchHhhHhhhhccccC--CC---C--------CCC-------CCceeEecC------------CCCC
Q 017295 78 --QLFKPKSAVPAFLEIHDIAGLVRGAHE--GQ---G--------AFE-------DPDIIHVDD------------SVDP 123 (374)
Q Consensus 78 --~~~~~~~~~~~~~~v~D~~gl~~~~~~--~~---~--------~~~-------~~~il~l~~------------~~dP 123 (374)
..|.+|......+++.|++.+...... .. . .+. +.....+++ +.+|
T Consensus 89 ~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p 168 (261)
T PRK14263 89 RYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEP 168 (261)
T ss_pred hceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 146666652224777777765321110 00 0 110 011122332 5689
Q ss_pred chhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHh--------CCCceeccC
Q 017295 124 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQ--------DGKDVRLGD 185 (374)
Q Consensus 124 ~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~--------~G~iv~~~~ 185 (374)
+++++|||+.++|+......++.+.+.. ++.+ |++..+..+||++ .+|+ +|+++..++
T Consensus 169 --~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~~i~~~~d~v-~~l~~~~~~~~~~G~i~~~g~ 239 (261)
T PRK14263 169 --EVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQQAIRVADTT-AFFSVDISQGTRTGYLVEMGP 239 (261)
T ss_pred --CEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEE-EEEecccccccCCceEEEeCC
Confidence 9999999999999999999999998875 3443 9999999999999 8885 788886654
No 281
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.53 E-value=9.1e-15 Score=124.03 Aligned_cols=160 Identities=17% Similarity=0.269 Sum_probs=122.2
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhh-----------hhh
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----------LCQ 78 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~-----------l~~ 78 (374)
..++|-+|++ |..+.++||+|||||||++.|.-+ .-|.+|+..+.+..++. +.+
T Consensus 14 ~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnll-----------e~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~ 82 (242)
T COG4161 14 AHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLL-----------EMPRSGTLNIAGNHFDFSKTPSDKAIRDLRR 82 (242)
T ss_pred cchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHH-----------hCCCCCeEEecccccccccCccHHHHHHHHH
Confidence 3456777765 567999999999999999999988 55999999887765432 221
Q ss_pred --hccCCCC-ccccchHhhHhhhh----ccccCCCC--------------CCCCCceeEecC------------CCCCch
Q 017295 79 --LFKPKSA-VPAFLEIHDIAGLV----RGAHEGQG--------------AFEDPDIIHVDD------------SVDPVR 125 (374)
Q Consensus 79 --~~~~~~~-~~~~~~v~D~~gl~----~~~~~~~~--------------~~~~~~il~l~~------------~~dP~~ 125 (374)
+++.|.. +.+++++.+++--. .+.++... .+.+...+|+++ +.+|
T Consensus 83 ~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkp-- 160 (242)
T COG4161 83 NVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEP-- 160 (242)
T ss_pred hhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCC--
Confidence 3555554 67788887764321 12221110 556677788887 6789
Q ss_pred hHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCCC
Q 017295 126 DLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 187 (374)
Q Consensus 126 ~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~~ 187 (374)
+++++|||+..+|++...+..+.|+++...|.+ |..+.+..++.+| ..|++|+++..|+.+
T Consensus 161 qvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~v-vyme~g~ive~g~a~ 226 (242)
T COG4161 161 QVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRV-VYMENGHIVEQGDAS 226 (242)
T ss_pred cEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhhe-EeeecCeeEeecchh
Confidence 999999999999999999999999998876665 9999999999999 999999999887543
No 282
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.53 E-value=1.7e-15 Score=141.47 Aligned_cols=161 Identities=12% Similarity=0.100 Sum_probs=110.5
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh-------h--hhc
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-------C--QLF 80 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l-------~--~~~ 80 (374)
++.+|+++++ |..+||+|+||||||||+++|+|.... .| ..|++|.|.++|.++... . ..|
T Consensus 18 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~---~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 91 (253)
T PRK14261 18 EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDL---IP---GCRITGDILYNGENIMDSGADVVALRRKIGM 91 (253)
T ss_pred CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccC---CC---CCCcceEEEECCEEccccccchhhhhceEEE
Confidence 4568888875 456999999999999999999998210 00 012589999999876422 1 146
Q ss_pred cCCCC-ccccchHhhHhhhhccccCCC--C-------------CC-------CCCceeEecC------------CCCCch
Q 017295 81 KPKSA-VPAFLEIHDIAGLVRGAHEGQ--G-------------AF-------EDPDIIHVDD------------SVDPVR 125 (374)
Q Consensus 81 ~~~~~-~~~~~~v~D~~gl~~~~~~~~--~-------------~~-------~~~~il~l~~------------~~dP~~ 125 (374)
.+|.. ++. .++.|++.+........ . .+ .+.....+++ +.+|
T Consensus 92 ~~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p-- 168 (253)
T PRK14261 92 VFQRPNPFP-KSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNP-- 168 (253)
T ss_pred EecCCccCc-ccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCC--
Confidence 66665 333 37777776542211100 0 00 0111112222 5689
Q ss_pred hHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 126 DLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 126 ~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+++++|||+.++|....+...+.+.+..+ +.+ |+...+..+||++ .+|++|+++..++
T Consensus 169 ~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~~~~~~~d~v-~~l~~G~i~~~g~ 231 (253)
T PRK14261 169 EVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQQAARVSDYT-GFMYLGKLIEFDK 231 (253)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHHHHHhhCCEE-EEEECCEEEEcCC
Confidence 99999999999999999999999887764 344 9999999999999 8999999876554
No 283
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.53 E-value=1.8e-15 Score=142.84 Aligned_cols=156 Identities=13% Similarity=0.113 Sum_probs=111.3
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccC-----CceeEEEeCCcchhh-------hh
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE-----PNEARVNIPDERFEW-------LC 77 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~-----p~~G~i~~~g~~~~~-------l~ 77 (374)
++.+|+++++. ..+||+|+||||||||+++|+|. .. |++|.|.++|.++.. ..
T Consensus 37 ~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl-----------~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~ 105 (272)
T PRK14236 37 DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRM-----------NDLVDNCRIEGEIRLDGQNIYDKKVDVAELR 105 (272)
T ss_pred CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhc-----------CCCccCCCCceEEEECCEECcccccCHHHHh
Confidence 34688888764 55999999999999999999999 44 489999999977532 11
Q ss_pred --hhccCCCC-ccccchHhhHhhhhccccCC-C-----C---------CC-------CCCceeEecC------------C
Q 017295 78 --QLFKPKSA-VPAFLEIHDIAGLVRGAHEG-Q-----G---------AF-------EDPDIIHVDD------------S 120 (374)
Q Consensus 78 --~~~~~~~~-~~~~~~v~D~~gl~~~~~~~-~-----~---------~~-------~~~~il~l~~------------~ 120 (374)
..|.+|.. ++.. ++.|+..+....... . . .+ .+.....+++ +
T Consensus 106 ~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~ 184 (272)
T PRK14236 106 RRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIA 184 (272)
T ss_pred ccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHH
Confidence 14667664 3333 777776543211100 0 0 11 0111222322 5
Q ss_pred CCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 121 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 121 ~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
.+| +++++|||+.++|.......++.+.+..+ +.+ |+...+..+||++ .+|++|+++..++
T Consensus 185 ~~p--~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~~~~~~d~i-~~l~~G~i~~~g~ 250 (272)
T PRK14236 185 IEP--EVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQQAARVSDYT-AFMYMGKLVEYGD 250 (272)
T ss_pred CCC--CEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHHHHHhhCCEE-EEEECCEEEecCC
Confidence 689 99999999999999999999999988764 444 9999999999999 8999999886654
No 284
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.53 E-value=2.3e-15 Score=138.52 Aligned_cols=154 Identities=21% Similarity=0.231 Sum_probs=109.4
Q ss_pred ccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccc
Q 017295 15 RPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFL 90 (374)
Q Consensus 15 ~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~ 90 (374)
..++++|++. ..+||||.+|||||||-++|+|+ .+|++|.|.+.|.++..+... .....-.
T Consensus 26 v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L-----------~~pt~G~i~f~g~~i~~~~~~----~~~~~v~ 90 (268)
T COG4608 26 VKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGL-----------EEPTSGEILFEGKDITKLSKE----ERRERVL 90 (268)
T ss_pred eEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcC-----------cCCCCceEEEcCcchhhcchh----HHHHHHH
Confidence 4778888764 55999999999999999999999 899999999999886443310 0000012
Q ss_pred hHhhHhhhhcc-----ccCCCCCCCCCceeEecCCCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccC-c-----c
Q 017295 91 EIHDIAGLVRG-----AHEGQGAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSN-D-----K 159 (374)
Q Consensus 91 ~v~D~~gl~~~-----~~~~~~~~~~~~il~l~~~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~-~-----H 159 (374)
.+.+.+|+... .|.-.+...+...+...-+.+| ++.+.|||.+++|.....+.++.+..+.++.+ + |
T Consensus 91 elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P--~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsH 168 (268)
T COG4608 91 ELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNP--KLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISH 168 (268)
T ss_pred HHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCC--cEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEE
Confidence 44455554321 1110111111111111115678 99999999999999999999999988876543 2 9
Q ss_pred chHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 160 QLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 160 ~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
|+..+..+||++ .+|..|+++..++.
T Consensus 169 DL~vv~~isdri-~VMy~G~iVE~g~~ 194 (268)
T COG4608 169 DLSVVRYISDRI-AVMYLGKIVEIGPT 194 (268)
T ss_pred EHHhhhhhcccE-EEEecCceeEecCH
Confidence 999999999999 99999999987654
No 285
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.53 E-value=2.2e-15 Score=142.55 Aligned_cols=156 Identities=16% Similarity=0.141 Sum_probs=111.4
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccC-----CceeEEEeCCcchhhh------h-
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE-----PNEARVNIPDERFEWL------C- 77 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~-----p~~G~i~~~g~~~~~l------~- 77 (374)
++.+|+++++ |..++|+|+||||||||+++|+|. .+ |++|.|.++|.++... .
T Consensus 33 ~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl-----------~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 101 (276)
T PRK14271 33 GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRM-----------NDKVSGYRYSGDVLLGGRSIFNYRDVLEFRR 101 (276)
T ss_pred CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcc-----------CCcCCCCCCceEEEECCEEccccchhHHHhh
Confidence 4568888875 456999999999999999999999 54 4799999999765321 1
Q ss_pred -hhccCCCC-ccccchHhhHhhhhccccCCCC-------------C--CC-------CCceeEecC------------CC
Q 017295 78 -QLFKPKSA-VPAFLEIHDIAGLVRGAHEGQG-------------A--FE-------DPDIIHVDD------------SV 121 (374)
Q Consensus 78 -~~~~~~~~-~~~~~~v~D~~gl~~~~~~~~~-------------~--~~-------~~~il~l~~------------~~ 121 (374)
..|.+|.. ++. .++.+++.+......... . +. +..+..+++ +.
T Consensus 102 ~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~ 180 (276)
T PRK14271 102 RVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAV 180 (276)
T ss_pred heEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhc
Confidence 14667765 333 677776654321110000 0 10 011122232 57
Q ss_pred CCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 122 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 122 dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+| +++++|||+.++|......+.+.+.++.+ ..+ |++..+..+||++ .+|++|+++..++
T Consensus 181 ~p--~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~dri-~~l~~G~i~~~g~ 245 (276)
T PRK14271 181 NP--EVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLAQAARISDRA-ALFFDGRLVEEGP 245 (276)
T ss_pred CC--CEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 89 99999999999999999999998887764 343 9999999999999 9999999886654
No 286
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.52 E-value=2e-15 Score=143.43 Aligned_cols=156 Identities=13% Similarity=0.147 Sum_probs=108.9
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccC-----CceeEEEeCCcchhhh-------h-
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE-----PNEARVNIPDERFEWL-------C- 77 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~-----p~~G~i~~~g~~~~~l-------~- 77 (374)
+.+|+++++ |..++|+|+||||||||+++|+|. .. |++|.|.++|.++... .
T Consensus 52 ~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl-----------~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~ 120 (285)
T PRK14254 52 EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRM-----------NDLIDAARVEGELTFRGKNVYDADVDPVALRR 120 (285)
T ss_pred EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------CCcccCCCCceEEEECCEEccccccchHhhhc
Confidence 468888875 456999999999999999999999 44 6899999999765321 1
Q ss_pred -hhccCCCC-ccccchHhhHhhhhccccC-C-C---C--------CC-------CCCceeEecC------------CCCC
Q 017295 78 -QLFKPKSA-VPAFLEIHDIAGLVRGAHE-G-Q---G--------AF-------EDPDIIHVDD------------SVDP 123 (374)
Q Consensus 78 -~~~~~~~~-~~~~~~v~D~~gl~~~~~~-~-~---~--------~~-------~~~~il~l~~------------~~dP 123 (374)
..|.+|.. ++. .++.|++.+...... . . . .+ .+..+..+++ +.+|
T Consensus 121 ~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p 199 (285)
T PRK14254 121 RIGMVFQKPNPFP-KSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDP 199 (285)
T ss_pred cEEEEecCCccCc-CCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 14666664 333 367666654321100 0 0 0 01 0112222333 5689
Q ss_pred chhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 124 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 124 ~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+++++|||++++|......+.+.+.+..++ .+ |+...+..+||++..+|++|+++..++
T Consensus 200 --~lLLLDEPts~LD~~~~~~l~~~L~~~~~~-~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~ 263 (285)
T PRK14254 200 --EVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTHNMQQAARISDKTAVFLTGGELVEFDD 263 (285)
T ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCC
Confidence 999999999999999999999999887643 33 999999999999624579999876553
No 287
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.52 E-value=1.7e-15 Score=155.70 Aligned_cols=157 Identities=18% Similarity=0.263 Sum_probs=113.3
Q ss_pred ccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeC-Ccc---hh--------hhh-
Q 017295 15 RPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIP-DER---FE--------WLC- 77 (374)
Q Consensus 15 ~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~-g~~---~~--------~l~- 77 (374)
+.+|+++++. ..+||+|+||||||||+++|+|. ..|++|.|.++ |.+ +. ...
T Consensus 297 ~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl-----------~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~ 365 (520)
T TIGR03269 297 VKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGV-----------LEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKR 365 (520)
T ss_pred ceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeEEEEecCCccccccccchhhHHHHhh
Confidence 4689988764 56999999999999999999999 78999999995 532 11 111
Q ss_pred -hhccCCCC-ccccchHhhHhhhhccc--cCC---CC--------CCC--------CCceeEecC------------CCC
Q 017295 78 -QLFKPKSA-VPAFLEIHDIAGLVRGA--HEG---QG--------AFE--------DPDIIHVDD------------SVD 122 (374)
Q Consensus 78 -~~~~~~~~-~~~~~~v~D~~gl~~~~--~~~---~~--------~~~--------~~~il~l~~------------~~d 122 (374)
..|.+|.. +++.+++.+++.+.... ... .. .+. +..+-.+++ +.+
T Consensus 366 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~ 445 (520)
T TIGR03269 366 YIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKE 445 (520)
T ss_pred hEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 24677764 55567787777542110 000 00 111 122223333 568
Q ss_pred CchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 123 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 123 P~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
| +++++|||++++|+.....+++.+.++.++ +.+ |++..+..+||++ .+|++|+++..++
T Consensus 446 p--~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i-~~l~~G~i~~~g~ 511 (520)
T TIGR03269 446 P--RIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRA-ALMRDGKIVKIGD 511 (520)
T ss_pred C--CEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 9 999999999999999999999999887654 444 9999999999999 8999999876653
No 288
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.52 E-value=3.2e-14 Score=138.90 Aligned_cols=192 Identities=17% Similarity=0.187 Sum_probs=118.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhcc
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~-s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~~ 101 (374)
...++||||+||+|||||+|+|+|....+ ++.|+||+++..-.+.++|+. +.++||+|+-+.
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~-----------------~~liDTAGiRrk 239 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRK-----------------YVLIDTAGIRRK 239 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeE-----------------EEEEECCCCCcc
Confidence 45789999999999999999999998866 999999999999999999876 788999998543
Q ss_pred ccCCCCCCCCCceeEecCCCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCccchHHHHHHHHHHHHHHhCCCce
Q 017295 102 AHEGQGAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV 181 (374)
Q Consensus 102 ~~~~~~~~~~~~il~l~~~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~H~~~~~~~~~d~v~~~L~~G~iv 181 (374)
..-... +-.. ++.+-+. +.+.++-|..+|+..
T Consensus 240 ~ki~e~------~E~~-----------------------Sv~rt~~----------------aI~~a~vvllviDa~--- 271 (444)
T COG1160 240 GKITES------VEKY-----------------------SVARTLK----------------AIERADVVLLVIDAT--- 271 (444)
T ss_pred cccccc------eEEE-----------------------eehhhHh----------------HHhhcCEEEEEEECC---
Confidence 221100 0000 0000000 111122221111111
Q ss_pred eccCCChhHHHHHHhccccccCCEEEEEcCCCccccc--cccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCCChhHHH
Q 017295 182 RLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQR--KKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADMPPDEAA 259 (374)
Q Consensus 182 ~~~~~~~~~~~~l~~~~~~~~kP~i~v~Nk~d~d~~~--~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l~~~~~~ 259 (374)
...++.|.. +..+-....+|+|+|+||.|.-..+ ..++..+.++..+......+++++||+++.++.+|-+.-..
T Consensus 272 --~~~~~qD~~-ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~ 348 (444)
T COG1160 272 --EGISEQDLR-IAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKE 348 (444)
T ss_pred --CCchHHHHH-HHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHH
Confidence 123333333 3444455689999999999742110 01223344444443334779999999999999888554344
Q ss_pred HHHHhcc-c-cccHHHHHHHHHhhc
Q 017295 260 KYCEENK-V-QSALPKIIKTGFSAI 282 (374)
Q Consensus 260 ~~~~~~~-~-~~~l~~l~~~~~~~L 282 (374)
.|-...- + .+.|+++++.+...=
T Consensus 349 ~~~~~~~ri~Ts~LN~~l~~a~~~~ 373 (444)
T COG1160 349 IYECATRRISTSLLNRVLEDAVAKH 373 (444)
T ss_pred HHHHhccccCHHHHHHHHHHHHHhC
Confidence 4433332 3 778888887665543
No 289
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.52 E-value=2.9e-15 Score=139.70 Aligned_cols=156 Identities=13% Similarity=0.127 Sum_probs=110.0
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccC-----CceeEEEeCCcchhhh-------h
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE-----PNEARVNIPDERFEWL-------C 77 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~-----p~~G~i~~~g~~~~~l-------~ 77 (374)
++.+|+++++ |..++|+|+||||||||+++|+|. .. |+.|.|.++|.++... .
T Consensus 17 ~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~-----------~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 85 (251)
T PRK14244 17 SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRM-----------NDFVPNCKVKGELDIDGIDVYSVDTNVVLLR 85 (251)
T ss_pred CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh-----------cccCCCCCcceEEEECCEehHhcccchHHHh
Confidence 3568888875 456999999999999999999998 33 5799999999776321 1
Q ss_pred --hhccCCCC-ccccchHhhHhhhhccccCC--C-C-------------CCC-------CCceeEecC------------
Q 017295 78 --QLFKPKSA-VPAFLEIHDIAGLVRGAHEG--Q-G-------------AFE-------DPDIIHVDD------------ 119 (374)
Q Consensus 78 --~~~~~~~~-~~~~~~v~D~~gl~~~~~~~--~-~-------------~~~-------~~~il~l~~------------ 119 (374)
..|.+|.. ++.. ++.++..+....... . . .+. +.....+++
T Consensus 86 ~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral 164 (251)
T PRK14244 86 AKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAI 164 (251)
T ss_pred hhEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHH
Confidence 14667764 3332 666666543211100 0 0 110 011112222
Q ss_pred CCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 120 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 120 ~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
..+| +++++|||+.++|........+.+.+.. ++.+ |+...+..+||++ .+|++|+++..++
T Consensus 165 ~~~p--~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~~~~~~~d~i-~~l~~G~i~~~~~ 231 (251)
T PRK14244 165 AVKP--TMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMKQAKKVSDRV-AFFQSGRIVEYNT 231 (251)
T ss_pred hcCC--CEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHhhcCEE-EEEECCEEEEeCC
Confidence 5689 9999999999999999999999888775 4444 9999999999999 9999999886554
No 290
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.52 E-value=2.2e-15 Score=171.52 Aligned_cols=157 Identities=15% Similarity=0.131 Sum_probs=119.1
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh----h--hhccCC
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----C--QLFKPK 83 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l----~--~~~~~~ 83 (374)
++.+|+++++. ..+||+|+||||||||+++|+|. ..|++|.|.++|.++... . ..|.||
T Consensus 942 ~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGL-----------l~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ 1010 (2272)
T TIGR01257 942 GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGL-----------LPPTSGTVLVGGKDIETNLDAVRQSLGMCPQ 1010 (2272)
T ss_pred CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcC-----------CCCCceEEEECCEECcchHHHHhhcEEEEec
Confidence 35688988864 55999999999999999999999 889999999999876421 1 146777
Q ss_pred CC-ccccchHhhHhhhhccccCCCC--------------C---CCCCceeEecC------------CCCCchhHHHHHHH
Q 017295 84 SA-VPAFLEIHDIAGLVRGAHEGQG--------------A---FEDPDIIHVDD------------SVDPVRDLEVISAE 133 (374)
Q Consensus 84 ~~-~~~~~~v~D~~gl~~~~~~~~~--------------~---~~~~~il~l~~------------~~dP~~~l~ilde~ 133 (374)
.. +++.+++.|++.+......... . ..+..+-.+++ +.+| +++++|||
T Consensus 1011 ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~P--kVLLLDEP 1088 (2272)
T TIGR01257 1011 HNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDA--KVVVLDEP 1088 (2272)
T ss_pred CCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCC--CEEEEECC
Confidence 75 6667899998876432211000 0 11122222332 5688 99999999
Q ss_pred HHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 134 LRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 134 l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
++++|+......++.+.+.. ++.+ |+++++..+||++ .+|++|+++..|+
T Consensus 1089 TSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmdea~~laDrI-~iL~~GkL~~~Gs 1143 (2272)
T TIGR01257 1089 TSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMDEADLLGDRI-AIISQGRLYCSGT 1143 (2272)
T ss_pred CcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHHHHHHhCCEE-EEEECCEEEEecC
Confidence 99999999999999998874 4544 9999999999999 9999999887654
No 291
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.52 E-value=6.4e-15 Score=125.71 Aligned_cols=153 Identities=17% Similarity=0.164 Sum_probs=107.2
Q ss_pred ccccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhh-------hcc
Q 017295 13 AERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFK 81 (374)
Q Consensus 13 ~~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~-------~~~ 81 (374)
++..+|+++++. ..++|.||+|||||||+++++.+ +.|++|.+.+.|+++..+.. .|.
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~L-----------isp~~G~l~f~Ge~vs~~~pea~Rq~VsY~ 82 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASL-----------ISPTSGTLLFEGEDVSTLKPEAYRQQVSYC 82 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhc-----------cCCCCceEEEcCccccccChHHHHHHHHHH
Confidence 577899999874 55999999999999999999999 88999999999998754322 344
Q ss_pred CCCCccccchHhhHhhhhccccCCCC----------------CCCCCceeEecC------------CCCCchhHHHHHHH
Q 017295 82 PKSAVPAFLEIHDIAGLVRGAHEGQG----------------AFEDPDIIHVDD------------SVDPVRDLEVISAE 133 (374)
Q Consensus 82 ~~~~~~~~~~v~D~~gl~~~~~~~~~----------------~~~~~~il~l~~------------~~dP~~~l~ilde~ 133 (374)
-|......-+|.|++-+.-..+.... .+....+-.+++ ..-| +++++||+
T Consensus 83 ~Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P--~ILLLDE~ 160 (223)
T COG4619 83 AQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMP--KILLLDEI 160 (223)
T ss_pred HcCccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCC--ceEEecCc
Confidence 44442222467777665422221111 112222333333 3457 99999999
Q ss_pred HHhhcHHHHHHHHHHHHHHHHccC------ccchHHHHHHHHHHHHHHhCCC
Q 017295 134 LRLKDIEFMERRIEDVEKSMKRSN------DKQLKIEHELCQRVKAWLQDGK 179 (374)
Q Consensus 134 l~~~D~~~~~~~~~~i~~~~~~~~------~H~~~~~~~~~d~v~~~L~~G~ 179 (374)
++.+|....+++-+.|.++.+... ||+-.+....++++ +-+..|.
T Consensus 161 TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~-itl~~G~ 211 (223)
T COG4619 161 TSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKV-ITLQPGH 211 (223)
T ss_pred hhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheE-EEeccCc
Confidence 999999999888888877774322 39888888888887 5555554
No 292
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=2.9e-15 Score=149.93 Aligned_cols=159 Identities=18% Similarity=0.243 Sum_probs=115.1
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhh-------hccC
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKP 82 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~-------~~~~ 82 (374)
++++++++++. ..++|||++|||||||+++|+|. .+|+.|+|.++|.++..+.. .+.+
T Consensus 333 g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~-----------~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~ 401 (559)
T COG4988 333 GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGF-----------LAPTQGEIRVNGIDLRDLSPEAWRKQISWVS 401 (559)
T ss_pred CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCc-----------CCCCCceEEECCccccccCHHHHHhHeeeeC
Confidence 44788888865 45999999999999999999999 78999999999998876552 5788
Q ss_pred CCCccccchHhhHhhhhccccCCCC-----------CCCCC--ceeE--------ecC-----------CCCCchhHHHH
Q 017295 83 KSAVPAFLEIHDIAGLVRGAHEGQG-----------AFEDP--DIIH--------VDD-----------SVDPVRDLEVI 130 (374)
Q Consensus 83 ~~~~~~~~~v~D~~gl~~~~~~~~~-----------~~~~~--~il~--------l~~-----------~~dP~~~l~il 130 (374)
|+.....-++.|++.+.+.....+. .|.+. .+-. +++ ..+| .++.++
T Consensus 402 Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~-~~l~ll 480 (559)
T COG4988 402 QNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSP-ASLLLL 480 (559)
T ss_pred CCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCC-CCEEEe
Confidence 8875445678888777544221110 11000 0000 111 1233 389999
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCCC
Q 017295 131 SAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 187 (374)
Q Consensus 131 de~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~~ 187 (374)
|||++.+|+++-+.+.+.+.+..+. ++ |.+..+ .-+|+| .+|++|+++..+..+
T Consensus 481 DEpTA~LD~etE~~i~~~l~~l~~~-ktvl~itHrl~~~-~~~D~I-~vld~G~l~~~g~~~ 539 (559)
T COG4988 481 DEPTAHLDAETEQIILQALQELAKQ-KTVLVITHRLEDA-ADADRI-VVLDNGRLVEQGTHE 539 (559)
T ss_pred cCCccCCCHhHHHHHHHHHHHHHhC-CeEEEEEcChHHH-hcCCEE-EEecCCceeccCCHH
Confidence 9999999999999889999888754 44 888664 448999 999999998776543
No 293
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.51 E-value=3.9e-15 Score=139.47 Aligned_cols=158 Identities=17% Similarity=0.219 Sum_probs=111.3
Q ss_pred ccccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCC------cchhhh-----h
Q 017295 13 AERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD------ERFEWL-----C 77 (374)
Q Consensus 13 ~~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g------~~~~~l-----~ 77 (374)
+++.+|+++++. ..++|+|+||||||||+++|+|. ..|++|.|.++| .++... .
T Consensus 21 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~-----------~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~ 89 (257)
T PRK14246 21 NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRL-----------IEIYDSKIKVDGKVLYFGKDIFQIDAIKLR 89 (257)
T ss_pred CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCcCceeEcCEEEECCcccccCCHHHHh
Confidence 356789988864 56999999999999999999999 778887666554 433211 1
Q ss_pred --hhccCCCC-ccccchHhhHhhhhccccC--CCC-------------CC-------CCCceeEecC------------C
Q 017295 78 --QLFKPKSA-VPAFLEIHDIAGLVRGAHE--GQG-------------AF-------EDPDIIHVDD------------S 120 (374)
Q Consensus 78 --~~~~~~~~-~~~~~~v~D~~gl~~~~~~--~~~-------------~~-------~~~~il~l~~------------~ 120 (374)
..|.+|.. +++.+++.|++.+...... ... .+ .+.....++. +
T Consensus 90 ~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~ 169 (257)
T PRK14246 90 KEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALA 169 (257)
T ss_pred cceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence 14666665 5556678877765421110 000 11 0111222232 5
Q ss_pred CCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 121 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 121 ~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
.+| +++++|||+.++|........+.+.++.. +.+ |+...+..+||++ .+|++|+++..+.
T Consensus 170 ~~P--~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~~~~~~~d~v-~~l~~g~i~~~g~ 235 (257)
T PRK14246 170 LKP--KVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQQVARVADYV-AFLYNGELVEWGS 235 (257)
T ss_pred cCC--CEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 789 99999999999999999999999987753 344 9999999999999 8999999887654
No 294
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.51 E-value=2.3e-15 Score=141.49 Aligned_cols=161 Identities=13% Similarity=0.078 Sum_probs=108.7
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhh-------hh--hhc
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LC--QLF 80 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~-------l~--~~~ 80 (374)
.+.+|+++++. ..++|+|+||||||||+++|+|.... +| ..|++|.|.++|.++.. .. ..|
T Consensus 22 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~---~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~ 95 (264)
T PRK14243 22 SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDL---IP---GFRVEGKVTFHGKNLYAPDVDPVEVRRRIGM 95 (264)
T ss_pred CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcc---cC---CCCCceEEEECCEEccccccChHHHhhhEEE
Confidence 34688888764 55999999999999999999998210 00 01478999999976531 11 145
Q ss_pred cCCCC-ccccchHhhHhhhhccccC--CC--C---------CC-------CCCceeEecC------------CCCCchhH
Q 017295 81 KPKSA-VPAFLEIHDIAGLVRGAHE--GQ--G---------AF-------EDPDIIHVDD------------SVDPVRDL 127 (374)
Q Consensus 81 ~~~~~-~~~~~~v~D~~gl~~~~~~--~~--~---------~~-------~~~~il~l~~------------~~dP~~~l 127 (374)
.+|.. ++. .++.+++.+...... .. . .+ .+..+..+++ +.+| ++
T Consensus 96 v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p--~l 172 (264)
T PRK14243 96 VFQKPNPFP-KSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQP--EV 172 (264)
T ss_pred EccCCcccc-ccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCC--CE
Confidence 66664 332 367776654321110 00 0 00 0111222222 5689 99
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHh---------CCCceeccC
Q 017295 128 EVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQ---------DGKDVRLGD 185 (374)
Q Consensus 128 ~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~---------~G~iv~~~~ 185 (374)
+++|||++++|+......++.+.+..+ +.+ |++..+..+||++ .+|+ +|+++..+.
T Consensus 173 llLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~~~~~~~d~v-~~l~~~~~~~~~~~g~i~~~~~ 242 (264)
T PRK14243 173 ILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQQAARVSDMT-AFFNVELTEGGGRYGYLVEFDR 242 (264)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEE-EEEecccccccccCceEEEeCC
Confidence 999999999999999999999988764 343 9999999999999 8887 788876653
No 295
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.51 E-value=9.8e-15 Score=133.74 Aligned_cols=144 Identities=14% Similarity=0.142 Sum_probs=100.1
Q ss_pred ccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeC--Cc--chhh--------h--
Q 017295 15 RPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIP--DE--RFEW--------L-- 76 (374)
Q Consensus 15 ~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~--g~--~~~~--------l-- 76 (374)
+.+|+++++. ..++|+|+||||||||+++|+|. ++|+.|.|.++ |. ++.. .
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~-----------~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~ 89 (224)
T TIGR02324 21 LPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYAN-----------YLPDSGRILVRHEGAWVDLAQASPREVLEVRR 89 (224)
T ss_pred eEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCeEEEecCCCccchhhcCHHHHHHHHh
Confidence 4689998764 56999999999999999999999 88999999997 42 3321 1
Q ss_pred -hhhccCCCC-ccccchHhhHhhhhc---cccCCC---C--------CCC----CCceeEecC------------CCCCc
Q 017295 77 -CQLFKPKSA-VPAFLEIHDIAGLVR---GAHEGQ---G--------AFE----DPDIIHVDD------------SVDPV 124 (374)
Q Consensus 77 -~~~~~~~~~-~~~~~~v~D~~gl~~---~~~~~~---~--------~~~----~~~il~l~~------------~~dP~ 124 (374)
...|.+|.. +++.+++.|++.+.. +..... . .+. +..+..+++ ..+|
T Consensus 90 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p- 168 (224)
T TIGR02324 90 KTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADY- 168 (224)
T ss_pred cceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCC-
Confidence 124666664 555566666654311 100000 0 111 112222332 5689
Q ss_pred hhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHH
Q 017295 125 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRV 171 (374)
Q Consensus 125 ~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v 171 (374)
+++++|||++++|+.......+.+.+..+++.+ |+...+..+||++
T Consensus 169 -~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i 219 (224)
T TIGR02324 169 -PILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRV 219 (224)
T ss_pred -CEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhccee
Confidence 999999999999999999999999887655554 9988888888877
No 296
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.51 E-value=8.2e-15 Score=153.36 Aligned_cols=162 Identities=14% Similarity=0.145 Sum_probs=121.1
Q ss_pred ccccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCC---ceeEEEeCCcchhh--h--hhhcc
Q 017295 13 AERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP---NEARVNIPDERFEW--L--CQLFK 81 (374)
Q Consensus 13 ~~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p---~~G~i~~~g~~~~~--l--~~~~~ 81 (374)
+++.+|++++.. ..++|+|+||||||||+++|+|. ..| ..|+|.++|.++.. . ...|.
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~-----------~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv 104 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFR-----------SPKGVKGSGSVLLNGMPIDAKEMRAISAYV 104 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcceeEEEECCEECCHHHHhhhceee
Confidence 367899999864 45999999999999999999998 445 37999999987642 1 12577
Q ss_pred CCCC-ccccchHhhHhhhhccccCCC--C---------------CC---CCCcee------EecC------------CCC
Q 017295 82 PKSA-VPAFLEIHDIAGLVRGAHEGQ--G---------------AF---EDPDII------HVDD------------SVD 122 (374)
Q Consensus 82 ~~~~-~~~~~~v~D~~gl~~~~~~~~--~---------------~~---~~~~il------~l~~------------~~d 122 (374)
+|+. +++.+++.|++.+........ . .+ .+..+- .+++ ..+
T Consensus 105 ~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~ 184 (617)
T TIGR00955 105 QQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTD 184 (617)
T ss_pred ccccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcC
Confidence 8876 667789999887643322110 0 11 111111 2333 468
Q ss_pred CchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchH-HHHHHHHHHHHHHhCCCceeccCCCh
Q 017295 123 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLK-IEHELCQRVKAWLQDGKDVRLGDWKA 188 (374)
Q Consensus 123 P~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~-~~~~~~d~v~~~L~~G~iv~~~~~~~ 188 (374)
| +++++|||+.++|.......++.+++.++++.+ |+.. ++..++|++ .+|++|+++..|+.++
T Consensus 185 p--~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i-~ll~~G~~v~~G~~~~ 253 (617)
T TIGR00955 185 P--PLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKI-ILMAEGRVAYLGSPDQ 253 (617)
T ss_pred C--CEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceE-EEeeCCeEEEECCHHH
Confidence 8 999999999999999999999999988766554 9874 788999999 9999999998887543
No 297
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.51 E-value=1.6e-15 Score=137.35 Aligned_cols=153 Identities=18% Similarity=0.241 Sum_probs=106.8
Q ss_pred ccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-------hhccCC
Q 017295 15 RPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPK 83 (374)
Q Consensus 15 ~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-------~~~~~~ 83 (374)
+.+|+++++. ..++|+|+||||||||+++|+|. .+|++|.|.++|.++.... ..|.+|
T Consensus 21 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q 89 (207)
T cd03369 21 PPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRF-----------LEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQ 89 (207)
T ss_pred cccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcc-----------cCCCCCeEEECCEEhHHCCHHHHHhhEEEEec
Confidence 4688888764 56999999999999999999999 7899999999998763211 246666
Q ss_pred CC-ccccchHhhHhhhhccccCCC--CCCC-CCceeEecC------------CCCCchhHHHHHHHHHhhcHHHHHHHHH
Q 017295 84 SA-VPAFLEIHDIAGLVRGAHEGQ--GAFE-DPDIIHVDD------------SVDPVRDLEVISAELRLKDIEFMERRIE 147 (374)
Q Consensus 84 ~~-~~~~~~v~D~~gl~~~~~~~~--~~~~-~~~il~l~~------------~~dP~~~l~ilde~l~~~D~~~~~~~~~ 147 (374)
.. ++. .++.++..+........ ..+. +.....+++ +.+| +++++|||+.++|+......++
T Consensus 90 ~~~~~~-~tv~~~l~~~~~~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p--~llllDEP~~~LD~~~~~~l~~ 166 (207)
T cd03369 90 DPTLFS-GTIRSNLDPFDEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRP--RVLVLDEATASIDYATDALIQK 166 (207)
T ss_pred CCcccC-ccHHHHhcccCCCCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCC--CEEEEeCCcccCCHHHHHHHHH
Confidence 65 333 47777664432110000 0000 111112222 5688 9999999999999999999999
Q ss_pred HHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceecc
Q 017295 148 DVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLG 184 (374)
Q Consensus 148 ~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~ 184 (374)
.+.+.. ++.+ |+...+.. ||++ .+|++|+++..+
T Consensus 167 ~l~~~~-~~~tiii~th~~~~~~~-~d~v-~~l~~g~i~~~g 205 (207)
T cd03369 167 TIREEF-TNSTILTIAHRLRTIID-YDKI-LVMDAGEVKEYD 205 (207)
T ss_pred HHHHhc-CCCEEEEEeCCHHHHhh-CCEE-EEEECCEEEecC
Confidence 888764 4443 99988765 8999 888888876543
No 298
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.51 E-value=4.1e-15 Score=139.60 Aligned_cols=156 Identities=17% Similarity=0.143 Sum_probs=109.1
Q ss_pred ccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCC-----ceeEEEeCCcchhh-------hh-
Q 017295 15 RPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP-----NEARVNIPDERFEW-------LC- 77 (374)
Q Consensus 15 ~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p-----~~G~i~~~g~~~~~-------l~- 77 (374)
+.+|+++++. ..+||+|+||||||||+++|+|. .+| ..|.|.++|.++.. ..
T Consensus 20 ~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl-----------~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~ 88 (261)
T PRK14258 20 QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRM-----------NELESEVRVEGRVEFFNQNIYERRVNLNRLRR 88 (261)
T ss_pred eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcc-----------cCCCCCccccceEEECCEEhhccccchHHhhc
Confidence 4688888764 56999999999999999999999 445 47999999876521 11
Q ss_pred -hhccCCCC-ccccchHhhHhhhhccccC--CC----C---------CC-------CCCceeEecC------------CC
Q 017295 78 -QLFKPKSA-VPAFLEIHDIAGLVRGAHE--GQ----G---------AF-------EDPDIIHVDD------------SV 121 (374)
Q Consensus 78 -~~~~~~~~-~~~~~~v~D~~gl~~~~~~--~~----~---------~~-------~~~~il~l~~------------~~ 121 (374)
..|.+|.. ++. .++.|+..+...... .. . .+ .+.....+++ +.
T Consensus 89 ~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~ 167 (261)
T PRK14258 89 QVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAV 167 (261)
T ss_pred cEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 13556654 333 677776654311100 00 0 00 0111222222 56
Q ss_pred CCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhC-----CCceeccC
Q 017295 122 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQD-----GKDVRLGD 185 (374)
Q Consensus 122 dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~-----G~iv~~~~ 185 (374)
+| +++++|||+.++|+.......+.+.+.... +.+ |++..+..+||++ .+|++ |+++..++
T Consensus 168 ~p--~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i-~~l~~~~~~~G~i~~~~~ 239 (261)
T PRK14258 168 KP--KVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFT-AFFKGNENRIGQLVEFGL 239 (261)
T ss_pred CC--CEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEE-EEEccCCCcCceEEEeCC
Confidence 88 999999999999999999999999876543 444 9999999999999 89998 88876543
No 299
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.51 E-value=5.9e-15 Score=150.61 Aligned_cols=155 Identities=12% Similarity=0.149 Sum_probs=108.3
Q ss_pred cccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh--------hhccCC
Q 017295 16 PILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC--------QLFKPK 83 (374)
Q Consensus 16 ~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~--------~~~~~~ 83 (374)
.+|+++++ |..+||+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.+|
T Consensus 262 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q 330 (491)
T PRK10982 262 PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGI-----------REKSAGTITLHGKKINNHNANEAINHGFALVTE 330 (491)
T ss_pred cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCC-----------CcCCccEEEECCEECCCCCHHHHHHCCCEEcCC
Confidence 47888775 556999999999999999999999 7899999999987653211 135555
Q ss_pred CC----ccccchHhhH-----hhhhccccC--CCC-------------CC----CCCceeEecC------------CCCC
Q 017295 84 SA----VPAFLEIHDI-----AGLVRGAHE--GQG-------------AF----EDPDIIHVDD------------SVDP 123 (374)
Q Consensus 84 ~~----~~~~~~v~D~-----~gl~~~~~~--~~~-------------~~----~~~~il~l~~------------~~dP 123 (374)
.. ++..+++.++ ......... ... .+ .+..+-.+++ +.+|
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p 410 (491)
T PRK10982 331 ERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQP 410 (491)
T ss_pred chhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCC
Confidence 42 2333443332 111000000 000 11 1222333443 5689
Q ss_pred chhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceecc
Q 017295 124 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLG 184 (374)
Q Consensus 124 ~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~ 184 (374)
+++++|||++++|+...+.+++.+.++.+++.+ |++..+..+||++ .+|++|+++..+
T Consensus 411 --~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v-~~l~~g~i~~~~ 473 (491)
T PRK10982 411 --EILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRI-LVMSNGLVAGIV 473 (491)
T ss_pred --CEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEE-EEEECCEEEEEE
Confidence 999999999999999999999999887766654 9999999999999 899999988543
No 300
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.50 E-value=3.6e-15 Score=140.28 Aligned_cols=161 Identities=11% Similarity=0.109 Sum_probs=109.5
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhh---------hh--h
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW---------LC--Q 78 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~---------l~--~ 78 (374)
++.+|+++++ |..++|+|+||||||||+++|+|... ++|++ |++|.|.++|.++.. .. .
T Consensus 28 ~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~---~~sG~i~~~g~~~~~~~~~~~~~~~~~~i 101 (265)
T PRK14252 28 GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHD---LYPGN---HYEGEIILHPDNVNILSPEVDPIEVRMRI 101 (265)
T ss_pred CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC---CCCCC---CcccEEEEcCccccccccccCHHHHhccE
Confidence 3468888765 56699999999999999999999821 11111 378999998765421 11 1
Q ss_pred hccCCCC-ccccchHhhHhhhhcccc---CC----CC--------CC-------CCCceeEecC------------CCCC
Q 017295 79 LFKPKSA-VPAFLEIHDIAGLVRGAH---EG----QG--------AF-------EDPDIIHVDD------------SVDP 123 (374)
Q Consensus 79 ~~~~~~~-~~~~~~v~D~~gl~~~~~---~~----~~--------~~-------~~~~il~l~~------------~~dP 123 (374)
.|.+|.. ++. .++.|++.+..... .. .. .. .+.....+++ +.+|
T Consensus 102 ~~~~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 180 (265)
T PRK14252 102 SMVFQKPNPFP-KSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDP 180 (265)
T ss_pred EEEccCCcCCc-chHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 4667664 333 37777665432100 00 00 00 0111222332 5689
Q ss_pred chhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 124 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 124 ~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+++++|||+.++|........+.+.+... +.+ |+++.+..+||++ .+|++|+++..++
T Consensus 181 --~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~~~~~~~d~i-~~l~~G~i~~~g~ 243 (265)
T PRK14252 181 --EILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQQAARVSDYT-AYMYMGELIEFGA 243 (265)
T ss_pred --CEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 99999999999999999999999988764 343 9999999999999 8999999886654
No 301
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.50 E-value=3.6e-15 Score=139.10 Aligned_cols=155 Identities=12% Similarity=0.114 Sum_probs=108.8
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccC--C---ceeEEEeCCcchhh-------h-
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE--P---NEARVNIPDERFEW-------L- 76 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~--p---~~G~i~~~g~~~~~-------l- 76 (374)
.+.+|+++++ |..+||+|+||||||||+++|+|. .+ | ++|.|.++|.++.. .
T Consensus 17 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 85 (252)
T PRK14255 17 KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRM-----------NDLIPGVTITGNVSLRGQNIYAPNEDVVQLR 85 (252)
T ss_pred CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------cccCCCCCcccEEEEcCEEcccccccHHHhc
Confidence 3568998775 456999999999999999999997 32 3 58999999976531 1
Q ss_pred -hhhccCCCC-ccccchHhhHhhhhccccC---CC----C--------CC-------CCCceeEecC------------C
Q 017295 77 -CQLFKPKSA-VPAFLEIHDIAGLVRGAHE---GQ----G--------AF-------EDPDIIHVDD------------S 120 (374)
Q Consensus 77 -~~~~~~~~~-~~~~~~v~D~~gl~~~~~~---~~----~--------~~-------~~~~il~l~~------------~ 120 (374)
...|.+|.. ++. .++.+++.+...... .. . .+ .+..+..+++ +
T Consensus 86 ~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~ 164 (252)
T PRK14255 86 KQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLA 164 (252)
T ss_pred CeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHh
Confidence 124666664 333 477776654311100 00 0 00 0111112222 5
Q ss_pred CCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceecc
Q 017295 121 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLG 184 (374)
Q Consensus 121 ~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~ 184 (374)
.+| +++++|||++++|........+.+.+..+ +.+ |+...+..+||++ .+|++|+++..+
T Consensus 165 ~~p--~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~~d~i-~~l~~G~i~~~~ 229 (252)
T PRK14255 165 VKP--DVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMHQASRISDKT-AFFLTGNLIEFA 229 (252)
T ss_pred cCC--CEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHHHHHHhCCEE-EEEECCEEEEeC
Confidence 689 99999999999999999999999988764 343 9999999999999 899999987654
No 302
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.50 E-value=3.3e-15 Score=141.21 Aligned_cols=157 Identities=15% Similarity=0.086 Sum_probs=109.1
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccC-----CceeEEEeCCcchhh-------hh
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE-----PNEARVNIPDERFEW-------LC 77 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~-----p~~G~i~~~g~~~~~-------l~ 77 (374)
++.+|+++++. ..++|+|+||||||||+++|+|. .+ |+.|.|.++|.++.. ..
T Consensus 32 ~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl-----------~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~ 100 (274)
T PRK14265 32 GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRM-----------NDLIPGAKVEGRLLYRDRNIYDSQINSVKLR 100 (274)
T ss_pred CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------cccccCCCcCceEEECCEecccccchhHHHh
Confidence 34688888764 55999999999999999999998 43 368999999976531 11
Q ss_pred --hhccCCCC-ccccchHhhHhhhhccccCC--C-C----------CC-------CCCceeEecC------------CCC
Q 017295 78 --QLFKPKSA-VPAFLEIHDIAGLVRGAHEG--Q-G----------AF-------EDPDIIHVDD------------SVD 122 (374)
Q Consensus 78 --~~~~~~~~-~~~~~~v~D~~gl~~~~~~~--~-~----------~~-------~~~~il~l~~------------~~d 122 (374)
..|.+|.. ++. .++.|++.+....... . . .+ .+..+..+++ +.+
T Consensus 101 ~~i~~v~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~ 179 (274)
T PRK14265 101 RQVGMVFQRPNPFP-KSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMK 179 (274)
T ss_pred hcEEEEccCCcccc-ccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhC
Confidence 14667664 332 3677766543211000 0 0 00 0111122222 568
Q ss_pred CchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHh---------CCCceeccCC
Q 017295 123 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQ---------DGKDVRLGDW 186 (374)
Q Consensus 123 P~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~---------~G~iv~~~~~ 186 (374)
| +++++|||++++|+.....+.+.+.+..+ +.+ |+...+..+||++ .+|+ +|+++..++.
T Consensus 180 p--~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~~~~~~~d~i-~~l~~~~~~~~~~~G~~~~~g~~ 253 (274)
T PRK14265 180 P--DVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQQASRVADWT-AFFNTEIDEYGKRRGKLVEFSPT 253 (274)
T ss_pred C--CEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEE-EEEecccccccccCceEEEeCCH
Confidence 9 99999999999999999999999988763 443 9999999999999 8886 7888766543
No 303
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.50 E-value=8.4e-15 Score=132.72 Aligned_cols=139 Identities=9% Similarity=0.067 Sum_probs=94.9
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh----hhhccCCCC-
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----CQLFKPKSA- 85 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l----~~~~~~~~~- 85 (374)
+.+|+++++ |..+||+|+||||||||+++|+|. .+|++|.|.++|.++... ...|.++..
T Consensus 15 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 83 (207)
T PRK13539 15 RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGL-----------LPPAAGTIKLDGGDIDDPDVAEACHYLGHRNA 83 (207)
T ss_pred eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEeCcchhhHhhcEEecCCCc
Confidence 457888875 456999999999999999999999 789999999998764321 124555443
Q ss_pred ccccchHhhHhhhhccccCCCC-------------CCCCCceeEecC------------CCCCchhHHHHHHHHHhhcHH
Q 017295 86 VPAFLEIHDIAGLVRGAHEGQG-------------AFEDPDIIHVDD------------SVDPVRDLEVISAELRLKDIE 140 (374)
Q Consensus 86 ~~~~~~v~D~~gl~~~~~~~~~-------------~~~~~~il~l~~------------~~dP~~~l~ilde~l~~~D~~ 140 (374)
++...++.|+..+....+.... .+.+...-.+++ +.+| +++++|||+.++|+.
T Consensus 84 ~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p--~llllDEPt~~LD~~ 161 (207)
T PRK13539 84 MKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNR--PIWILDEPTAALDAA 161 (207)
T ss_pred CCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCC--CEEEEeCCcccCCHH
Confidence 4455677777654322111000 001111112222 5688 999999999999999
Q ss_pred HHHHHHHHHHHHHHccCc-----cchHHHHH
Q 017295 141 FMERRIEDVEKSMKRSND-----KQLKIEHE 166 (374)
Q Consensus 141 ~~~~~~~~i~~~~~~~~~-----H~~~~~~~ 166 (374)
.....++.+.+..+++.+ |+..++..
T Consensus 162 ~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~ 192 (207)
T PRK13539 162 AVALFAELIRAHLAQGGIVIAATHIPLGLPG 192 (207)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCchhhcc
Confidence 999999999877655544 87766544
No 304
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.50 E-value=1.1e-14 Score=131.06 Aligned_cols=132 Identities=16% Similarity=0.158 Sum_probs=91.9
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh------hhccCC
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC------QLFKPK 83 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~------~~~~~~ 83 (374)
++.+|+++++ |..++|+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.+|
T Consensus 12 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (198)
T TIGR01189 12 ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGL-----------LRPDSGEVRWNGTALAEQRDEPHRNILYLGH 80 (198)
T ss_pred CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCccEEEECCEEcccchHHhhhheEEecc
Confidence 4568888775 556999999999999999999999 7899999999997653221 145666
Q ss_pred CC-ccccchHhhHhhhhccccCCCC----------CC---CCCceeEecC------------CCCCchhHHHHHHHHHhh
Q 017295 84 SA-VPAFLEIHDIAGLVRGAHEGQG----------AF---EDPDIIHVDD------------SVDPVRDLEVISAELRLK 137 (374)
Q Consensus 84 ~~-~~~~~~v~D~~gl~~~~~~~~~----------~~---~~~~il~l~~------------~~dP~~~l~ilde~l~~~ 137 (374)
.. +++.+++.|++.+......... .+ .+..+-.+++ +.+| +++++|||++++
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p--~llllDEPt~~L 158 (198)
T TIGR01189 81 LPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRA--PLWILDEPTTAL 158 (198)
T ss_pred CcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCC--CEEEEeCCCcCC
Confidence 54 4455788887765432211100 00 1111222222 5689 999999999999
Q ss_pred cHHHHHHHHHHHHHHHHccCc
Q 017295 138 DIEFMERRIEDVEKSMKRSND 158 (374)
Q Consensus 138 D~~~~~~~~~~i~~~~~~~~~ 158 (374)
|.......++.+.+..+++.+
T Consensus 159 D~~~~~~l~~~l~~~~~~~~t 179 (198)
T TIGR01189 159 DKAGVALLAGLLRAHLARGGI 179 (198)
T ss_pred CHHHHHHHHHHHHHHHhCCCE
Confidence 999999888888876544443
No 305
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.50 E-value=2.5e-14 Score=122.46 Aligned_cols=155 Identities=18% Similarity=0.145 Sum_probs=110.6
Q ss_pred cccccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhh---------
Q 017295 12 PAERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ--------- 78 (374)
Q Consensus 12 ~~~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~--------- 78 (374)
...-.||++++. +..++|||++|||||||+-.|+|+ .+|++|+|.+.|+++..+..
T Consensus 20 ~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGL-----------d~~ssGeV~l~G~~L~~ldEd~rA~~R~~ 88 (228)
T COG4181 20 EGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGL-----------DDPSSGEVRLLGQPLHKLDEDARAALRAR 88 (228)
T ss_pred CcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcC-----------CCCCCceEEEcCcchhhcCHHHHHHhhcc
Confidence 456789998875 556999999999999999999999 78999999999998765432
Q ss_pred --hccCCCC-ccccchHhhHhhhhccccCC--CC---------------CCCCCceeEecC------------CCCCchh
Q 017295 79 --LFKPKSA-VPAFLEIHDIAGLVRGAHEG--QG---------------AFEDPDIIHVDD------------SVDPVRD 126 (374)
Q Consensus 79 --~~~~~~~-~~~~~~v~D~~gl~~~~~~~--~~---------------~~~~~~il~l~~------------~~dP~~~ 126 (374)
.++.|.+ +.++++..+++.+....... .. .......-.+++ +..| +
T Consensus 89 ~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P--~ 166 (228)
T COG4181 89 HVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRP--D 166 (228)
T ss_pred ceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCC--C
Confidence 4566665 56677777776653222110 00 000111112222 4567 9
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHccC-c-----cchHHHHHHHHHHHHHHhCCCce
Q 017295 127 LEVISAELRLKDIEFMERRIEDVEKSMKRSN-D-----KQLKIEHELCQRVKAWLQDGKDV 181 (374)
Q Consensus 127 l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~-~-----H~~~~~~~~~d~v~~~L~~G~iv 181 (374)
+++-|||+-++|-.+-.++.+.+-.+.+..+ + ||...+ .-|+|+ ..|.+|+++
T Consensus 167 vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA-~Rc~R~-~r~~~G~l~ 225 (228)
T COG4181 167 VLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLA-ARCDRQ-LRLRSGRLV 225 (228)
T ss_pred EEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHH-Hhhhhe-eeeecceec
Confidence 9999999999999999999998877765543 3 987654 448888 788888875
No 306
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.50 E-value=1.3e-14 Score=130.66 Aligned_cols=137 Identities=15% Similarity=0.181 Sum_probs=94.9
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh-----h-hhccCC
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C-QLFKPK 83 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l-----~-~~~~~~ 83 (374)
++.+|+++++. ..+||+|+||||||||+++|+|. .+|++|.|.++|.++... . ..|.+|
T Consensus 13 ~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~-----------~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q 81 (200)
T PRK13540 13 DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGL-----------LNPEKGEILFERQSIKKDLCTYQKQLCFVGH 81 (200)
T ss_pred CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCeeEEECCCccccCHHHHHhheEEecc
Confidence 35689888764 56999999999999999999999 789999999999876421 1 135666
Q ss_pred CC-ccccchHhhHhhhhccccCCC-C--------C---CCCCceeEecC------------CCCCchhHHHHHHHHHhhc
Q 017295 84 SA-VPAFLEIHDIAGLVRGAHEGQ-G--------A---FEDPDIIHVDD------------SVDPVRDLEVISAELRLKD 138 (374)
Q Consensus 84 ~~-~~~~~~v~D~~gl~~~~~~~~-~--------~---~~~~~il~l~~------------~~dP~~~l~ilde~l~~~D 138 (374)
.. +++..++.|+..+........ . . ..+..+..+++ +.+| +++++|||+.++|
T Consensus 82 ~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p--~~lilDEP~~~LD 159 (200)
T PRK13540 82 RSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKA--KLWLLDEPLVALD 159 (200)
T ss_pred ccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCC--CEEEEeCCCcccC
Confidence 54 445677888766532111100 0 0 11111222332 5789 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHccCc-----cchHH
Q 017295 139 IEFMERRIEDVEKSMKRSND-----KQLKI 163 (374)
Q Consensus 139 ~~~~~~~~~~i~~~~~~~~~-----H~~~~ 163 (374)
........+.+.+..+.+.+ |+...
T Consensus 160 ~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 189 (200)
T PRK13540 160 ELSLLTIITKIQEHRAKGGAVLLTSHQDLP 189 (200)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEeCCchh
Confidence 99999999988876544443 66544
No 307
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.50 E-value=3.4e-15 Score=158.89 Aligned_cols=154 Identities=17% Similarity=0.192 Sum_probs=113.8
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhh-------hccCC
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPK 83 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~-------~~~~~ 83 (374)
+++|+++++ |.++||+|++|||||||+++|+|. .+|++|.|.++|.++..+.. .|.||
T Consensus 492 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl-----------~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q 560 (710)
T TIGR03796 492 PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGL-----------YQPWSGEILFDGIPREEIPREVLANSVAMVDQ 560 (710)
T ss_pred CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECCEeHHHCCHHHHHhheeEEec
Confidence 568888876 456999999999999999999999 88999999999998865432 58888
Q ss_pred CCccccchHhhHhhhhccccCCCC--------C-------CCC--Ccee-----EecC------------CCCCchhHHH
Q 017295 84 SAVPAFLEIHDIAGLVRGAHEGQG--------A-------FED--PDII-----HVDD------------SVDPVRDLEV 129 (374)
Q Consensus 84 ~~~~~~~~v~D~~gl~~~~~~~~~--------~-------~~~--~~il-----~l~~------------~~dP~~~l~i 129 (374)
+.....-++.|+..+......... + +.. +..+ .+++ ..+| ++++
T Consensus 561 ~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p--~ili 638 (710)
T TIGR03796 561 DIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNP--SILI 638 (710)
T ss_pred CChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCC--CEEE
Confidence 875555688888876532111000 0 000 0000 1222 5688 9999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 130 ISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 130 lde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
+|||++.+|..+.....+.+.+ .+.| |.+..+ ..||+| .+|++|+++..|+.
T Consensus 639 LDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~i-~~~D~I-ivl~~G~i~~~G~~ 695 (710)
T TIGR03796 639 LDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLSTI-RDCDEI-IVLERGKVVQRGTH 695 (710)
T ss_pred EECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHHH-HhCCEE-EEEeCCEEEEecCH
Confidence 9999999999998888888865 3444 988765 459999 99999999977753
No 308
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.50 E-value=1.5e-13 Score=120.01 Aligned_cols=55 Identities=51% Similarity=0.895 Sum_probs=48.2
Q ss_pred EEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeC-CcchhhhhhhccCCCCccccchHhhHhhhhc
Q 017295 29 IVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIP-DERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (374)
Q Consensus 29 LvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~-g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~ 100 (374)
|+|+||||||||+|+|+|....++++|+||.+|+.|.+.++ +.. +.+.|+||+..
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-----------------~~i~DtpG~~~ 56 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGAR-----------------IQVADIPGLIE 56 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCe-----------------EEEEeccccch
Confidence 68999999999999999998777999999999999998877 543 68889998754
No 309
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.50 E-value=2.7e-15 Score=135.62 Aligned_cols=158 Identities=20% Similarity=0.155 Sum_probs=105.4
Q ss_pred ccccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh------h--hc
Q 017295 13 AERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC------Q--LF 80 (374)
Q Consensus 13 ~~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~------~--~~ 80 (374)
+++++|+++++ +.+.+|+|+||||||||+++++|. ..|.+|.+.+.|++++.-. + ++
T Consensus 42 ~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~-----------~~pssg~~~~~G~~~G~~~~~~elrk~IG~ 110 (257)
T COG1119 42 NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGE-----------HPPSSGDVTLLGRRFGKGETIFELRKRIGL 110 (257)
T ss_pred CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcc-----------cCCCCCceeeeeeeccCCcchHHHHHHhCc
Confidence 47889999986 556999999999999999999999 6788999999887754311 1 12
Q ss_pred cCCC---CccccchHhhHhhhhccccCCCC----------------------CCCCCceeEec------------CCCCC
Q 017295 81 KPKS---AVPAFLEIHDIAGLVRGAHEGQG----------------------AFEDPDIIHVD------------DSVDP 123 (374)
Q Consensus 81 ~~~~---~~~~~~~v~D~~gl~~~~~~~~~----------------------~~~~~~il~l~------------~~~dP 123 (374)
++.. .++....+.|++--+...+.|.. ...+...-.++ -+.+|
T Consensus 111 vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P 190 (257)
T COG1119 111 VSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDP 190 (257)
T ss_pred cCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCC
Confidence 2111 11222333333322211111100 01111111111 15689
Q ss_pred chhHHHHHHHHHhhcHHHHHHHHHHHHHHHHcc-C------ccchHHHHHHHHHHHHHHhCCCceecc
Q 017295 124 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRS-N------DKQLKIEHELCQRVKAWLQDGKDVRLG 184 (374)
Q Consensus 124 ~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~-~------~H~~~~~~~~~d~v~~~L~~G~iv~~~ 184 (374)
.++++|||+.++|+..++...+.+.++.... . +|..+++....+++ ..|.+|+++..+
T Consensus 191 --~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~-lll~~g~v~~~g 255 (257)
T COG1119 191 --ELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHR-LLLKEGEVVAQG 255 (257)
T ss_pred --CEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceE-EEeeCCceeecc
Confidence 9999999999999999999999998877442 2 29999988888888 888899887654
No 310
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.49 E-value=3.3e-15 Score=155.73 Aligned_cols=155 Identities=17% Similarity=0.184 Sum_probs=114.3
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhh-------hccC
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKP 82 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~-------~~~~ 82 (374)
++++|+++++ |.++||+|++|||||||+++|+|. . |++|.|.++|.++..+.. .|.|
T Consensus 362 ~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~-----------~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~ 429 (588)
T PRK11174 362 GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGF-----------L-PYQGSLKINGIELRELDPESWRKHLSWVG 429 (588)
T ss_pred CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------C-CCCcEEEECCEecccCCHHHHHhheEEec
Confidence 3568888875 566999999999999999999999 8 899999999988765432 5889
Q ss_pred CCCccccchHhhHhhhhcc-ccCCCC--------------CCCC--Cce-----eEecC------------CCCCchhHH
Q 017295 83 KSAVPAFLEIHDIAGLVRG-AHEGQG--------------AFED--PDI-----IHVDD------------SVDPVRDLE 128 (374)
Q Consensus 83 ~~~~~~~~~v~D~~gl~~~-~~~~~~--------------~~~~--~~i-----l~l~~------------~~dP~~~l~ 128 (374)
|+....+-++.|+..++.. ++..+- .+.+ +.. ..+++ ..+| +++
T Consensus 430 Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~--~Il 507 (588)
T PRK11174 430 QNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPC--QLL 507 (588)
T ss_pred CCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCC--CEE
Confidence 9885555688998887632 211100 0000 000 01222 4688 999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 129 VISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 129 ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
++|||++.+|.++.+.+.+.+.+.. ++.| |.+..+ ..+|+| .+|++|+++..|+
T Consensus 508 iLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~~i-~~aD~I-ivl~~G~i~e~G~ 566 (588)
T PRK11174 508 LLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLEDL-AQWDQI-WVMQDGQIVQQGD 566 (588)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChHHH-HhCCEE-EEEeCCeEeecCC
Confidence 9999999999999998888887764 4444 988654 559999 8999999987765
No 311
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.49 E-value=2.7e-15 Score=131.28 Aligned_cols=139 Identities=18% Similarity=0.173 Sum_probs=94.8
Q ss_pred ccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccc
Q 017295 15 RPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFL 90 (374)
Q Consensus 15 ~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~ 90 (374)
+.+|+++++. ..++|+|+||||||||+++|+|. .+|++|.|.+++.+ ...|.+|+......
T Consensus 14 ~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~~~~----~i~~~~q~~~~~~~ 78 (166)
T cd03223 14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGL-----------WPWGSGRIGMPEGE----DLLFLPQRPYLPLG 78 (166)
T ss_pred CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCceEEECCCc----eEEEECCCCccccc
Confidence 4688888764 55999999999999999999999 78999999998742 22455665533346
Q ss_pred hHhhHhhhh--ccccCCCCCCCCCceeEecCCCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHH
Q 017295 91 EIHDIAGLV--RGAHEGQGAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKI 163 (374)
Q Consensus 91 ~v~D~~gl~--~~~~~~~~~~~~~~il~l~~~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~ 163 (374)
++.|++.+. ...|.|+. ....+...-+.+| +++++|||++++|+.......+.+.+. +.+ |+...
T Consensus 79 tv~~nl~~~~~~~LS~G~~---~rv~laral~~~p--~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~~ 150 (166)
T cd03223 79 TLREQLIYPWDDVLSGGEQ---QRLAFARLLLHKP--KFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPSL 150 (166)
T ss_pred cHHHHhhccCCCCCCHHHH---HHHHHHHHHHcCC--CEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChhH
Confidence 888887642 22233321 0000000114568 999999999999999998888887764 233 88764
Q ss_pred HHHHHHHHHHHHhCC
Q 017295 164 EHELCQRVKAWLQDG 178 (374)
Q Consensus 164 ~~~~~d~v~~~L~~G 178 (374)
...||++ .+|+++
T Consensus 151 -~~~~d~i-~~l~~~ 163 (166)
T cd03223 151 -WKFHDRV-LDLDGE 163 (166)
T ss_pred -HhhCCEE-EEEcCC
Confidence 4577777 555443
No 312
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.49 E-value=2.8e-15 Score=140.85 Aligned_cols=160 Identities=16% Similarity=0.227 Sum_probs=111.7
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccC-C----ceeEEEeCCcchhhhhh------
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE-P----NEARVNIPDERFEWLCQ------ 78 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~-p----~~G~i~~~g~~~~~l~~------ 78 (374)
...+++++++. +.+||||.+||||||+.++|+|+ ++ | .+|+|.++|.++-.+..
T Consensus 17 ~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~l-----------lp~~~~~i~~G~i~f~g~~l~~l~~~~~~~i 85 (316)
T COG0444 17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGL-----------LPKPNARIVGGEILFDGKDLLSLSEKELRKI 85 (316)
T ss_pred cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhc-----------cCCCCCeEeeeEEEECCcccccCCHHHHHhh
Confidence 45788988864 55999999999999999999998 43 2 56899999986533321
Q ss_pred -----hccCCCC---ccccchH----hhHhhhhccc-cCCC---C--------CCCC------CceeEecC---------
Q 017295 79 -----LFKPKSA---VPAFLEI----HDIAGLVRGA-HEGQ---G--------AFED------PDIIHVDD--------- 119 (374)
Q Consensus 79 -----~~~~~~~---~~~~~~v----~D~~gl~~~~-~~~~---~--------~~~~------~~il~l~~--------- 119 (374)
.+.+|+. +.+.+++ .++....... +..+ . .+.+ .....+++
T Consensus 86 RG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IA 165 (316)
T COG0444 86 RGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIA 165 (316)
T ss_pred cCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHH
Confidence 3445542 3343333 3333322111 0000 0 1111 11112222
Q ss_pred ---CCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc------cchHHHHHHHHHHHHHHhCCCceeccCCC
Q 017295 120 ---SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND------KQLKIEHELCQRVKAWLQDGKDVRLGDWK 187 (374)
Q Consensus 120 ---~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~------H~~~~~~~~~d~v~~~L~~G~iv~~~~~~ 187 (374)
+.+| ++++.|||+.++|.....++++.++++.++.++ ||+..+.++||+| .+|..|+++..++..
T Consensus 166 mala~~P--~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri-~VMYaG~iVE~g~~~ 239 (316)
T COG0444 166 MALALNP--KLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRV-AVMYAGRIVEEGPVE 239 (316)
T ss_pred HHHhCCC--CEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceE-EEEECcEEEEeCCHH
Confidence 6789 999999999999999999999999998864433 9999999999999 999999999887643
No 313
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.49 E-value=3e-15 Score=158.67 Aligned_cols=155 Identities=17% Similarity=0.100 Sum_probs=113.9
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhh-------hccC
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKP 82 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~-------~~~~ 82 (374)
++++|+++++ |.++||+|+||||||||+++|+|. .+|++|.|.++|.++..+.. .|.|
T Consensus 465 ~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl-----------~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~ 533 (686)
T TIGR03797 465 GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGF-----------ETPESGSVFYDGQDLAGLDVQAVRRQLGVVL 533 (686)
T ss_pred CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCEEEECCEEcCcCCHHHHHhccEEEc
Confidence 3568988875 566999999999999999999999 88999999999988765332 5788
Q ss_pred CCCccccchHhhHhhhhccccCCCC-------CC-------CC--Cce-----eEecC------------CCCCchhHHH
Q 017295 83 KSAVPAFLEIHDIAGLVRGAHEGQG-------AF-------ED--PDI-----IHVDD------------SVDPVRDLEV 129 (374)
Q Consensus 83 ~~~~~~~~~v~D~~gl~~~~~~~~~-------~~-------~~--~~i-----l~l~~------------~~dP~~~l~i 129 (374)
|+.....-++.|++.+...++..+- .+ .. +.. ..+++ ..+| ++++
T Consensus 534 Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p--~iLi 611 (686)
T TIGR03797 534 QNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKP--RILL 611 (686)
T ss_pred cCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCC--CEEE
Confidence 8874445688888877533111000 00 00 000 01222 4688 9999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 130 ISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 130 lde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
+|||++.+|..+.+...+.+.+. +.| |.+..+ ..+|+| .+|++|+++..|+.
T Consensus 612 LDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~~i-~~~D~I-ivl~~G~iv~~G~~ 668 (686)
T TIGR03797 612 FDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLSTI-RNADRI-YVLDAGRVVQQGTY 668 (686)
T ss_pred EeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChHHH-HcCCEE-EEEECCEEEEECCH
Confidence 99999999999998888888764 234 988665 459999 99999999987753
No 314
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.49 E-value=5.6e-15 Score=153.84 Aligned_cols=156 Identities=15% Similarity=0.186 Sum_probs=115.0
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhh-------hccCC
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPK 83 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~-------~~~~~ 83 (374)
+++|++++. |.+++|+|+||||||||+++|+|. .+|++|.|.++|.++..+.. .|.||
T Consensus 356 ~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl-----------~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q 424 (582)
T PRK11176 356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRF-----------YDIDEGEILLDGHDLRDYTLASLRNQVALVSQ 424 (582)
T ss_pred CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhc-----------cCCCCceEEECCEEhhhcCHHHHHhhceEEcc
Confidence 568988876 566999999999999999999999 89999999999988754332 58889
Q ss_pred CCccccchHhhHhhhhccc-cCCCC---------------CCCC--Cce-----eEecC------------CCCCchhHH
Q 017295 84 SAVPAFLEIHDIAGLVRGA-HEGQG---------------AFED--PDI-----IHVDD------------SVDPVRDLE 128 (374)
Q Consensus 84 ~~~~~~~~v~D~~gl~~~~-~~~~~---------------~~~~--~~i-----l~l~~------------~~dP~~~l~ 128 (374)
+.....-++.|+..++... ..... .+.+ +.. ..+++ ..+| +++
T Consensus 425 ~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~--~il 502 (582)
T PRK11176 425 NVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDS--PIL 502 (582)
T ss_pred CceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCC--CEE
Confidence 8754456888888875321 11000 0100 000 01222 4688 999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 129 VISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 129 ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
++|||++.+|........+.+.+.. +++| |++.. ...||+| .+|++|+++..|+.
T Consensus 503 ilDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~~-~~~~D~I-i~l~~g~i~e~g~~ 562 (582)
T PRK11176 503 ILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLST-IEKADEI-LVVEDGEIVERGTH 562 (582)
T ss_pred EEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchHH-HHhCCEE-EEEECCEEEEeCCH
Confidence 9999999999999999888887764 3444 98865 4569999 89999999877653
No 315
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.49 E-value=5.1e-15 Score=137.96 Aligned_cols=161 Identities=14% Similarity=0.120 Sum_probs=110.1
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh---------hhhc
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL---------CQLF 80 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l---------~~~~ 80 (374)
++.+|+++++. ..++|+|+||||||||+++|+|.... .| ..|++|.|.++|.++... ...|
T Consensus 15 ~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~---~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~ 88 (250)
T PRK14266 15 DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDL---IP---GFRHEGHIYLDGVDIYDPAVDVVELRKKVGM 88 (250)
T ss_pred CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcc---CC---CCCCccEEEECCEEcccccccHHHHhhheEE
Confidence 35688888765 46999999999999999999997210 00 014899999999876321 1256
Q ss_pred cCCCC-ccccchHhhHhhhhccccC--C-CC------------CC-------CCCceeEecC------------CCCCch
Q 017295 81 KPKSA-VPAFLEIHDIAGLVRGAHE--G-QG------------AF-------EDPDIIHVDD------------SVDPVR 125 (374)
Q Consensus 81 ~~~~~-~~~~~~v~D~~gl~~~~~~--~-~~------------~~-------~~~~il~l~~------------~~dP~~ 125 (374)
.+|.. ++. .++.|++.+...... . .. .+ .+.....+++ +.+|
T Consensus 89 ~~q~~~~~~-~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p-- 165 (250)
T PRK14266 89 VFQKPNPFP-KSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSP-- 165 (250)
T ss_pred EecCCccCc-chHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCC--
Confidence 77765 333 367776654311110 0 00 00 0111222332 5688
Q ss_pred hHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 126 DLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 126 ~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+++++|||+.++|+.......+.+.+.. ++.+ |+...+..+++++ .+|++|+++..++
T Consensus 166 ~llllDEP~~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~~~~~~~~i-~~l~~G~i~~~g~ 228 (250)
T PRK14266 166 EVILMDEPCSALDPISTTKIEDLIHKLK-EDYTIVIVTHNMQQATRVSKYT-SFFLNGEIIESGL 228 (250)
T ss_pred CEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEECCHHHHHhhcCEE-EEEECCeEEEeCC
Confidence 9999999999999999999999998775 4444 9999999999998 7889999886654
No 316
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.49 E-value=6.8e-15 Score=137.92 Aligned_cols=156 Identities=14% Similarity=0.114 Sum_probs=109.2
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCC-----ceeEEEeCCcchhh-------hh
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP-----NEARVNIPDERFEW-------LC 77 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p-----~~G~i~~~g~~~~~-------l~ 77 (374)
.+.+|+++++. ..++|+|+||||||||+++|+|. .+| ++|.|.++|.++.. ..
T Consensus 19 ~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl-----------~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 87 (259)
T PRK14260 19 TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRI-----------SELEGPVKVEGVVDFFGQNIYDPRININRLR 87 (259)
T ss_pred CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhh-----------cCcccCCccceEEEECCEeccccccchHhhh
Confidence 34688888764 56999999999999999999998 443 58999999976531 11
Q ss_pred --hhccCCCC-ccccchHhhHhhhhccccCC---CC------------CC-------CCCceeEecC------------C
Q 017295 78 --QLFKPKSA-VPAFLEIHDIAGLVRGAHEG---QG------------AF-------EDPDIIHVDD------------S 120 (374)
Q Consensus 78 --~~~~~~~~-~~~~~~v~D~~gl~~~~~~~---~~------------~~-------~~~~il~l~~------------~ 120 (374)
..|.+|.. ++. .++.+++.+....... .. .+ .+.....+++ +
T Consensus 88 ~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~ 166 (259)
T PRK14260 88 RQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALA 166 (259)
T ss_pred hheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHh
Confidence 24666665 333 6777776542111000 00 00 1111122222 5
Q ss_pred CCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHh-----CCCceeccC
Q 017295 121 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQ-----DGKDVRLGD 185 (374)
Q Consensus 121 ~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~-----~G~iv~~~~ 185 (374)
.+| +++++|||+.++|+......++.+.+..+ +.+ |+++.+..+||++ .+|+ +|+++..++
T Consensus 167 ~~p--~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~i~~~~d~i-~~l~~~~~~~G~i~~~~~ 237 (259)
T PRK14260 167 IKP--KVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQQATRVSDFT-AFFSTDESRIGQMVEFGV 237 (259)
T ss_pred cCC--CEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCeE-EEEeccCCCCceEEEeCC
Confidence 689 99999999999999999999999988753 344 9999999999999 8886 488876654
No 317
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.49 E-value=9.6e-14 Score=130.95 Aligned_cols=58 Identities=28% Similarity=0.300 Sum_probs=48.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhc
Q 017295 26 KIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Ltg~~~~-~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~ 100 (374)
.|+|+|+||||||||+|+|+|.+.. ++++|+||..+..|.....+.+ +.++|+||+..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~q-----------------ii~vDTPG~~~ 60 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQ-----------------IIFIDTPGFHE 60 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcE-----------------EEEEECcCCCC
Confidence 5899999999999999999999874 5999999999888876544322 67899999853
No 318
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.48 E-value=5.7e-15 Score=156.83 Aligned_cols=155 Identities=19% Similarity=0.238 Sum_probs=115.1
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhh-------hccCC
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPK 83 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~-------~~~~~ 83 (374)
+++|++++. |.+++|+|+||||||||+++|+|. .+|++|.|.++|.++..+.. .|.+|
T Consensus 478 ~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl-----------~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q 546 (694)
T TIGR03375 478 TPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGL-----------YQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQ 546 (694)
T ss_pred ccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCceEEECCEEhhhCCHHHHHhccEEECC
Confidence 468888875 556999999999999999999999 89999999999988765432 57888
Q ss_pred CCccccchHhhHhhhhccccCCCC---------------CCCC--Cce-----eEecC------------CCCCchhHHH
Q 017295 84 SAVPAFLEIHDIAGLVRGAHEGQG---------------AFED--PDI-----IHVDD------------SVDPVRDLEV 129 (374)
Q Consensus 84 ~~~~~~~~v~D~~gl~~~~~~~~~---------------~~~~--~~i-----l~l~~------------~~dP~~~l~i 129 (374)
+.....-++.|+..+......... .+.+ +.. ..+++ ..+| ++++
T Consensus 547 ~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p--~ili 624 (694)
T TIGR03375 547 DPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDP--PILL 624 (694)
T ss_pred ChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC--CEEE
Confidence 875545688888877543110000 0000 000 11222 4688 9999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 130 ISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 130 lde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+|||++.+|..+...+.+.+.+.. ++.| |.+..+ ..||+| .+|++|+++..|+
T Consensus 625 LDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~~~-~~~D~i-ivl~~G~i~e~G~ 682 (694)
T TIGR03375 625 LDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTSLL-DLVDRI-IVMDNGRIVADGP 682 (694)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHHHH-HhCCEE-EEEeCCEEEeeCC
Confidence 999999999999999988888765 3444 988764 679999 8999999997775
No 319
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.48 E-value=4.5e-15 Score=154.06 Aligned_cols=157 Identities=20% Similarity=0.269 Sum_probs=118.2
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhh-------hccC
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKP 82 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~-------~~~~ 82 (374)
++++|+++++ |.++||||++|||||||++.|++. .+|++|.|.++|.++..+.. .+.|
T Consensus 341 ~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~-----------~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~ 409 (567)
T COG1132 341 KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRL-----------YDPTSGEILIDGIDIRDISLDSLRKRIGIVS 409 (567)
T ss_pred CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------CCCCCCeEEECCEehhhcCHHHHHHhccEEc
Confidence 5678998875 566999999999999999999999 89999999999988765432 4788
Q ss_pred CCCccccchHhhHhhhhccc-cCCCC--------------CCCC--Ccee-----EecC------------CCCCchhHH
Q 017295 83 KSAVPAFLEIHDIAGLVRGA-HEGQG--------------AFED--PDII-----HVDD------------SVDPVRDLE 128 (374)
Q Consensus 83 ~~~~~~~~~v~D~~gl~~~~-~~~~~--------------~~~~--~~il-----~l~~------------~~dP~~~l~ 128 (374)
|+.....-++.|+..++... +..+- .+.+ +..+ .+++ ..+| +++
T Consensus 410 Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~--~IL 487 (567)
T COG1132 410 QDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNP--PIL 487 (567)
T ss_pred ccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCC--CEE
Confidence 88754457899998887542 21100 0000 0011 1111 4688 999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 129 VISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 129 ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
++||+++.+|..+.....+.+.+.. ++.| |.+..+.. +|+| .+|++|+++..|+.
T Consensus 488 ILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlsti~~-aD~I-iVl~~G~i~e~G~h 547 (567)
T COG1132 488 ILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLSTIKN-ADRI-IVLDNGRIVERGTH 547 (567)
T ss_pred EEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhHHHh-CCEE-EEEECCEEEEecCH
Confidence 9999999999999888888887655 4444 99977766 9999 99999999887754
No 320
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.48 E-value=3.5e-15 Score=134.76 Aligned_cols=143 Identities=17% Similarity=0.194 Sum_probs=92.3
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccc
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFL 90 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~ 90 (374)
+.+|+++++ |..++|+|+||||||||+++|+|. .+|++|.|.++| .+ .|.+|.......
T Consensus 18 ~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~-----------~~~~~G~i~~~g-~i-----~~~~q~~~l~~~ 80 (204)
T cd03250 18 SFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGE-----------LEKLSGSVSVPG-SI-----AYVSQEPWIQNG 80 (204)
T ss_pred cceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCc-----------CCCCCCeEEEcC-EE-----EEEecCchhccC
Confidence 368998885 456999999999999999999999 789999999988 22 344444311134
Q ss_pred hHhhHhhhhccccCCC--------C------CC-------CCCceeEecC------------CCCCchhHHHHHHHHHhh
Q 017295 91 EIHDIAGLVRGAHEGQ--------G------AF-------EDPDIIHVDD------------SVDPVRDLEVISAELRLK 137 (374)
Q Consensus 91 ~v~D~~gl~~~~~~~~--------~------~~-------~~~~il~l~~------------~~dP~~~l~ilde~l~~~ 137 (374)
++.|++.+........ + .+ .......++. +.+| ++.++|||+.++
T Consensus 81 t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p--~llllDEP~~~L 158 (204)
T cd03250 81 TIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDA--DIYLLDDPLSAV 158 (204)
T ss_pred cHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCC--CEEEEeCccccC
Confidence 5555544321110000 0 00 0001111222 5688 999999999999
Q ss_pred cHHHHHHHHHH-HHHHHHccCc-----cchHHHHHHHHHHHHHHhCC
Q 017295 138 DIEFMERRIED-VEKSMKRSND-----KQLKIEHELCQRVKAWLQDG 178 (374)
Q Consensus 138 D~~~~~~~~~~-i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G 178 (374)
|+...+...+. +....+.+.+ |+...+.. ||++ .+|++|
T Consensus 159 D~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~-~d~i-~~l~~G 203 (204)
T cd03250 159 DAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH-ADQI-VVLDNG 203 (204)
T ss_pred CHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh-CCEE-EEEeCC
Confidence 99988888774 4444334343 88877766 8877 666555
No 321
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.48 E-value=7e-15 Score=141.11 Aligned_cols=156 Identities=15% Similarity=0.187 Sum_probs=109.5
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccC-----CceeEEEeCCcchhhh---------
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE-----PNEARVNIPDERFEWL--------- 76 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~-----p~~G~i~~~g~~~~~l--------- 76 (374)
+.+|+++++ |..+||+|+||||||||+++|+|. .. |++|.|.++|.++...
T Consensus 58 ~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl-----------~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~ 126 (305)
T PRK14264 58 DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRM-----------NDRIKAARIDGSVELDGQDIYQDGVNLVELRK 126 (305)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------ccccCCCCCceEEEECCEEcccccccHHHHhh
Confidence 467888775 455999999999999999999998 43 6899999999765321
Q ss_pred hhhccCCCC-ccccchHhhHhhhhccccC-----------CC--C--------------CC-------CCCceeEecC--
Q 017295 77 CQLFKPKSA-VPAFLEIHDIAGLVRGAHE-----------GQ--G--------------AF-------EDPDIIHVDD-- 119 (374)
Q Consensus 77 ~~~~~~~~~-~~~~~~v~D~~gl~~~~~~-----------~~--~--------------~~-------~~~~il~l~~-- 119 (374)
...|.+|.. ++. .++.|++.+...... +. . .+ .+.....+++
T Consensus 127 ~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq 205 (305)
T PRK14264 127 RVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQ 205 (305)
T ss_pred ceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHH
Confidence 124667765 333 477777665321100 00 0 00 0111112222
Q ss_pred ----------CCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceecc
Q 017295 120 ----------SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLG 184 (374)
Q Consensus 120 ----------~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~ 184 (374)
+.+| +++++|||+.++|+.....+++.+.++.+. .+ |++..+..+||++..+|++|+++..+
T Consensus 206 ~qrv~LAraL~~~p--~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~-~tiiivtH~~~~i~~~~d~i~~~l~~G~i~~~g 282 (305)
T PRK14264 206 QQRLCIARCLAVDP--EVILMDEPASALDPIATSKIEDLIEELAEE-YTVVVVTHNMQQAARISDQTAVFLTGGELVEYD 282 (305)
T ss_pred HHHHHHHHHHhcCC--CEEEEeCCcccCCHHHHHHHHHHHHHHhcC-CEEEEEEcCHHHHHHhcCEEEEEecCCEEEEeC
Confidence 5689 999999999999999999999999887643 33 99999999999862567999998765
Q ss_pred C
Q 017295 185 D 185 (374)
Q Consensus 185 ~ 185 (374)
+
T Consensus 283 ~ 283 (305)
T PRK14264 283 D 283 (305)
T ss_pred C
Confidence 4
No 322
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.48 E-value=6.3e-15 Score=139.19 Aligned_cols=156 Identities=13% Similarity=0.138 Sum_probs=107.4
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-------hhccC
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKP 82 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-------~~~~~ 82 (374)
...+|+++++ |..+||+|+||||||||+++|+|. .+ ..|.|.++|.++..+. ..|.|
T Consensus 16 ~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl-----------~~-~~G~I~i~g~~i~~~~~~~lr~~i~~v~ 83 (275)
T cd03289 16 GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRL-----------LN-TEGDIQIDGVSWNSVPLQKWRKAFGVIP 83 (275)
T ss_pred CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhh-----------cC-CCcEEEECCEEhhhCCHHHHhhhEEEEC
Confidence 3468999886 456999999999999999999999 55 6899999998764321 24667
Q ss_pred CCCccccchHhhHhhhhccccC----------CCC----CCCCC---c----eeEecC------------CCCCchhHHH
Q 017295 83 KSAVPAFLEIHDIAGLVRGAHE----------GQG----AFEDP---D----IIHVDD------------SVDPVRDLEV 129 (374)
Q Consensus 83 ~~~~~~~~~v~D~~gl~~~~~~----------~~~----~~~~~---~----il~l~~------------~~dP~~~l~i 129 (374)
|.......++.++......... +.. .+... . -..+++ +.+| ++++
T Consensus 84 q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p--~ill 161 (275)
T cd03289 84 QKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKA--KILL 161 (275)
T ss_pred CCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC--CEEE
Confidence 7762223467666632110000 000 00000 0 000221 5688 9999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 130 ISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 130 lde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
+|||+.++|+.....+.+.+.+.. .+.+ |++..+. .||+| .+|++|+++..+++
T Consensus 162 lDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~~i~-~~dri-~vl~~G~i~~~g~~ 220 (275)
T cd03289 162 LDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIEAML-ECQRF-LVIEENKVRQYDSI 220 (275)
T ss_pred EECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHHHHH-hCCEE-EEecCCeEeecCCH
Confidence 999999999999988888888654 4444 9998775 49999 99999999877653
No 323
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.48 E-value=7.2e-15 Score=151.83 Aligned_cols=156 Identities=19% Similarity=0.217 Sum_probs=112.0
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-------hhccCC
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPK 83 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-------~~~~~~ 83 (374)
+.+|++++. |..++|+|+||||||||+++|+|. .+|++|.|.++|.++..+. ..|.||
T Consensus 331 ~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~-----------~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q 399 (544)
T TIGR01842 331 KPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGI-----------WPPTSGSVRLDGADLKQWDRETFGKHIGYLPQ 399 (544)
T ss_pred ccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEehhhCCHHHHhhheEEecC
Confidence 468888875 556999999999999999999999 8899999999998775432 157788
Q ss_pred CCccccchHhhHhhhhcc-ccCCC--------C------CCCC-------CceeEecC------------CCCCchhHHH
Q 017295 84 SAVPAFLEIHDIAGLVRG-AHEGQ--------G------AFED-------PDIIHVDD------------SVDPVRDLEV 129 (374)
Q Consensus 84 ~~~~~~~~v~D~~gl~~~-~~~~~--------~------~~~~-------~~il~l~~------------~~dP~~~l~i 129 (374)
+.....-++.|+..+... ++... + .+.+ .....+++ ..+| ++++
T Consensus 400 ~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~--~ili 477 (544)
T TIGR01842 400 DVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDP--KLVV 477 (544)
T ss_pred CcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCC--CEEE
Confidence 763333477887764322 11000 0 0100 00111222 4688 9999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 130 ISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 130 lde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+|||++++|........+.+.+...++.+ |+... ...||++ .+|++|+++..|+
T Consensus 478 lDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~-~~~~d~i-~~l~~G~i~~~g~ 536 (544)
T TIGR01842 478 LDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSL-LGCVDKI-LVLQDGRIARFGE 536 (544)
T ss_pred EeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHH-HHhCCEE-EEEECCEEEeeCC
Confidence 99999999999999888888876534444 98875 4679999 8999999987765
No 324
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.47 E-value=5.6e-15 Score=154.11 Aligned_cols=156 Identities=15% Similarity=0.140 Sum_probs=113.4
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhh-------hccCC
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPK 83 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~-------~~~~~ 83 (374)
+.+|+++++ |..+||+|++|||||||+++|+|. .+|++|.|.++|.++..+.. .|.||
T Consensus 354 ~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl-----------~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q 422 (592)
T PRK10790 354 NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGY-----------YPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQ 422 (592)
T ss_pred CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------cCCCCceEEECCEEhhhCCHHHHHhheEEEcc
Confidence 468888875 456999999999999999999999 89999999999988765331 57888
Q ss_pred CCccccchHhhHhhhhccccCCCC--------------CCCC---Cce----eEecC------------CCCCchhHHHH
Q 017295 84 SAVPAFLEIHDIAGLVRGAHEGQG--------------AFED---PDI----IHVDD------------SVDPVRDLEVI 130 (374)
Q Consensus 84 ~~~~~~~~v~D~~gl~~~~~~~~~--------------~~~~---~~i----l~l~~------------~~dP~~~l~il 130 (374)
+....+-++.|+..+...+....- .+.+ ..+ ..+++ ..+| +++++
T Consensus 423 ~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~--~illl 500 (592)
T PRK10790 423 DPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTP--QILIL 500 (592)
T ss_pred CCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCC--CEEEE
Confidence 874444588888877542111000 0000 000 01121 4578 99999
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 131 SAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 131 de~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
|||++.+|....+.+.+.+.+.. ++++ |++.. ...||+| .+|++|+++..|+.
T Consensus 501 DEpts~LD~~t~~~i~~~l~~~~-~~~tvIivtHr~~~-l~~~D~i-i~l~~G~i~~~G~~ 558 (592)
T PRK10790 501 DEATANIDSGTEQAIQQALAAVR-EHTTLVVIAHRLST-IVEADTI-LVLHRGQAVEQGTH 558 (592)
T ss_pred eCCcccCCHHHHHHHHHHHHHHh-CCCEEEEEecchHH-HHhCCEE-EEEECCEEEEEcCH
Confidence 99999999999888888887765 3444 98865 4469999 89999999877653
No 325
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.47 E-value=2.6e-14 Score=128.23 Aligned_cols=129 Identities=9% Similarity=0.045 Sum_probs=86.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh---hhccCCCC-ccccchHhhHhhh
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC---QLFKPKSA-VPAFLEIHDIAGL 98 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~---~~~~~~~~-~~~~~~v~D~~gl 98 (374)
.|..+||+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.++.. ++...++.|++.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~ 93 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGI-----------MQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKF 93 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHH
Confidence 5667999999999999999999999 7899999999998764322 23555543 4455677776654
Q ss_pred hccccCCCC---------CC---CCCceeEecC------------CCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 017295 99 VRGAHEGQG---------AF---EDPDIIHVDD------------SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMK 154 (374)
Q Consensus 99 ~~~~~~~~~---------~~---~~~~il~l~~------------~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~ 154 (374)
......... .+ .+.....+++ +.+| +++++|||+.++|+.......+.+....+
T Consensus 94 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p--~~lllDEP~~~LD~~~~~~l~~~l~~~~~ 171 (195)
T PRK13541 94 WSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQS--DLWLLDEVETNLSKENRDLLNNLIVMKAN 171 (195)
T ss_pred HHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCC--CEEEEeCCcccCCHHHHHHHHHHHHHHHh
Confidence 321110000 00 1111111222 5688 99999999999999998888888865443
Q ss_pred ccCc-----cchHHH
Q 017295 155 RSND-----KQLKIE 164 (374)
Q Consensus 155 ~~~~-----H~~~~~ 164 (374)
++.+ |+...+
T Consensus 172 ~~~tiii~sh~~~~i 186 (195)
T PRK13541 172 SGGIVLLSSHLESSI 186 (195)
T ss_pred CCCEEEEEeCCcccc
Confidence 4443 666543
No 326
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=7.9e-15 Score=145.01 Aligned_cols=157 Identities=17% Similarity=0.152 Sum_probs=110.3
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhh-------hccC
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKP 82 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~-------~~~~ 82 (374)
..++|+++++ |++|+|+|++|||||||++.|+|. .+|++|+|.++|.++..+.. .+.+
T Consensus 350 ~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~-----------~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~ 418 (573)
T COG4987 350 QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGA-----------WDPQQGSITLNGVEIASLDEQALRETISVLT 418 (573)
T ss_pred ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhc-----------cCCCCCeeeECCcChhhCChhhHHHHHhhhc
Confidence 3479999875 677999999999999999999999 99999999999988765443 3566
Q ss_pred CCCccccchHhhHhhhhccccCCCC--------CC----CCC----------ceeEecC------------CCCCchhHH
Q 017295 83 KSAVPAFLEIHDIAGLVRGAHEGQG--------AF----EDP----------DIIHVDD------------SVDPVRDLE 128 (374)
Q Consensus 83 ~~~~~~~~~v~D~~gl~~~~~~~~~--------~~----~~~----------~il~l~~------------~~dP~~~l~ 128 (374)
|+.-...-++.|+..+.......+. ++ .+. .=--+++ ..|. .+.
T Consensus 419 Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~da--pl~ 496 (573)
T COG4987 419 QRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDA--PLW 496 (573)
T ss_pred cchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCC--CeE
Confidence 6653333466666655422111110 00 000 0000011 1233 678
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 129 VISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 129 ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
++|||+.++|..+-.+++..+.... +++| |.+.. .+.||+| .+|++|+++.+|..
T Consensus 497 lLDEPTegLD~~TE~~vL~ll~~~~-~~kTll~vTHrL~~-le~~drI-ivl~~Gkiie~G~~ 556 (573)
T COG4987 497 LLDEPTEGLDPITERQVLALLFEHA-EGKTLLMVTHRLRG-LERMDRI-IVLDNGKIIEEGTH 556 (573)
T ss_pred EecCCcccCChhhHHHHHHHHHHHh-cCCeEEEEeccccc-HhhcCEE-EEEECCeeeecCCH
Confidence 8999999999999999999998776 4554 88766 4568999 99999999987754
No 327
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.47 E-value=6.1e-15 Score=138.08 Aligned_cols=154 Identities=12% Similarity=0.079 Sum_probs=105.1
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-------hhccCC
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPK 83 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-------~~~~~~ 83 (374)
+.+|+++++ |..+||+|+||||||||+++|+|. ..|++|.|.++|.++.... ..|.+|
T Consensus 34 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q 102 (257)
T cd03288 34 KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRM-----------VDIFDGKIVIDGIDISKLPLHTLRSRLSIILQ 102 (257)
T ss_pred CcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcc-----------cCCCCCeEEECCEEhhhCCHHHHhhhEEEECC
Confidence 468898875 456999999999999999999999 7899999999998764321 145566
Q ss_pred CC-ccccchHhhHhhhhccccC----------CCC----CC-------CCCceeEecC------------CCCCchhHHH
Q 017295 84 SA-VPAFLEIHDIAGLVRGAHE----------GQG----AF-------EDPDIIHVDD------------SVDPVRDLEV 129 (374)
Q Consensus 84 ~~-~~~~~~v~D~~gl~~~~~~----------~~~----~~-------~~~~il~l~~------------~~dP~~~l~i 129 (374)
.. +++ .++.++......... +.. .+ .......+++ +.+| ++++
T Consensus 103 ~~~l~~-~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p--~lll 179 (257)
T cd03288 103 DPILFS-GSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS--SILI 179 (257)
T ss_pred CCcccc-cHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC--CEEE
Confidence 54 322 355544432110000 000 00 0000111222 5688 9999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 130 ISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 130 lde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+|||+.++|+......++.+.... ++.+ |++..+.. ||++ .+|++|+++..++
T Consensus 180 lDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~~~~-~dri-~~l~~G~i~~~g~ 237 (257)
T cd03288 180 MDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVSTILD-ADLV-LVLSRGILVECDT 237 (257)
T ss_pred EeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChHHHHh-CCEE-EEEECCEEEEeCC
Confidence 999999999999888888887654 3443 99988765 9999 8999999886654
No 328
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.47 E-value=5.9e-15 Score=156.69 Aligned_cols=155 Identities=19% Similarity=0.208 Sum_probs=114.6
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhh-------hccCC
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPK 83 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~-------~~~~~ 83 (374)
+.+|+++++ |.+++|+|+||||||||+++|+|. .+|++|.|.++|.++..+.. .|.+|
T Consensus 470 ~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~-----------~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q 538 (694)
T TIGR01846 470 PEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRL-----------YTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQ 538 (694)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCceEEECCEehhhCCHHHHHHhCeEEcc
Confidence 468888876 557999999999999999999999 88999999999998765332 57888
Q ss_pred CCccccchHhhHhhhhccccCCCC---------------CCCC--Cce-----eEecC------------CCCCchhHHH
Q 017295 84 SAVPAFLEIHDIAGLVRGAHEGQG---------------AFED--PDI-----IHVDD------------SVDPVRDLEV 129 (374)
Q Consensus 84 ~~~~~~~~v~D~~gl~~~~~~~~~---------------~~~~--~~i-----l~l~~------------~~dP~~~l~i 129 (374)
+......++.|+..+......... .+.+ +.. ..+++ ..+| ++++
T Consensus 539 ~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~--~ili 616 (694)
T TIGR01846 539 ENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNP--RILI 616 (694)
T ss_pred CCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCC--CEEE
Confidence 875545688888877432110000 0000 000 11222 4688 9999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 130 ISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 130 lde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+|||++++|........+.+.+.. ++.+ |++..+. .||++ .+|++|+++..|+
T Consensus 617 lDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i-i~l~~G~i~~~g~ 674 (694)
T TIGR01846 617 FDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLSTVR-ACDRI-IVLEKGQIAESGR 674 (694)
T ss_pred EECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChHHHH-hCCEE-EEEeCCEEEEeCC
Confidence 999999999999999999988764 4444 9987764 59999 9999999987765
No 329
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.46 E-value=7.3e-15 Score=156.30 Aligned_cols=155 Identities=15% Similarity=0.174 Sum_probs=114.8
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhh-------hccC
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKP 82 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~-------~~~~ 82 (374)
++++|+++++ |.++||+|+||||||||+++|+|. .+|++|.|.++|.++..+.. .|.|
T Consensus 486 ~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl-----------~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~ 554 (708)
T TIGR01193 486 GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGF-----------FQARSGEILLNGFSLKDIDRHTLRQFINYLP 554 (708)
T ss_pred CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhcc-----------CCCCCcEEEECCEEHHHcCHHHHHHheEEEe
Confidence 3578888876 456999999999999999999999 89999999999998765432 5889
Q ss_pred CCCccccchHhhHhhhhc--cccCCCC-------C-------CCC--Ccee-----EecC------------CCCCchhH
Q 017295 83 KSAVPAFLEIHDIAGLVR--GAHEGQG-------A-------FED--PDII-----HVDD------------SVDPVRDL 127 (374)
Q Consensus 83 ~~~~~~~~~v~D~~gl~~--~~~~~~~-------~-------~~~--~~il-----~l~~------------~~dP~~~l 127 (374)
|+....+-++.|++.+.. .++...- . +.. +..+ .+++ ..+| ++
T Consensus 555 Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p--~i 632 (708)
T TIGR01193 555 QEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDS--KV 632 (708)
T ss_pred cCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCC--CE
Confidence 987555568888888752 1111000 0 000 0011 1222 4689 99
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 128 EVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 128 ~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+++|||++.+|..+.+...+.+.+. ++.| |.+..+ ..+|++ .+|++|+++..|+
T Consensus 633 liLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~~~-~~~D~i-~~l~~G~i~~~G~ 691 (708)
T TIGR01193 633 LILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLSVA-KQSDKI-IVLDHGKIIEQGS 691 (708)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchHHH-HcCCEE-EEEECCEEEEECC
Confidence 9999999999999988888888763 3444 988754 669999 9999999987765
No 330
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.46 E-value=8.3e-15 Score=152.24 Aligned_cols=155 Identities=15% Similarity=0.191 Sum_probs=114.0
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhh-------hccCC
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPK 83 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~-------~~~~~ 83 (374)
+.+|+++++ |..++|+|+||||||||+++|+|. .+|++|.|.++|.++..+.. .|.+|
T Consensus 353 ~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~-----------~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q 421 (574)
T PRK11160 353 QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRA-----------WDPQQGEILLNGQPIADYSEAALRQAISVVSQ 421 (574)
T ss_pred CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCceEEECCEEhhhCCHHHHHhheeEEcc
Confidence 468998876 456999999999999999999999 89999999999988765332 57888
Q ss_pred CCccccchHhhHhhhhccccCCCC-----------CCCCC----------ceeEecC------------CCCCchhHHHH
Q 017295 84 SAVPAFLEIHDIAGLVRGAHEGQG-----------AFEDP----------DIIHVDD------------SVDPVRDLEVI 130 (374)
Q Consensus 84 ~~~~~~~~v~D~~gl~~~~~~~~~-----------~~~~~----------~il~l~~------------~~dP~~~l~il 130 (374)
+....+-++.|+..+......... .+... .-..+++ ..+| +++++
T Consensus 422 ~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~--~ilil 499 (574)
T PRK11160 422 RVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDA--PLLLL 499 (574)
T ss_pred cchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCC--CEEEE
Confidence 874444688888877532111000 00000 0011222 5688 99999
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 131 SAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 131 de~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
|||++.+|....+.+.+.+.+.. ++.+ |.+..+. .+|++ .+|++|+++..|+
T Consensus 500 DE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~~~~-~~d~i-~~l~~G~i~~~g~ 556 (574)
T PRK11160 500 DEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLTGLE-QFDRI-CVMDNGQIIEQGT 556 (574)
T ss_pred eCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChhHHH-hCCEE-EEEeCCeEEEeCC
Confidence 99999999999998888888765 4444 9887654 59999 8999999987765
No 331
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.46 E-value=1.1e-13 Score=140.80 Aligned_cols=58 Identities=40% Similarity=0.637 Sum_probs=54.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhh
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~ 99 (374)
.++|++|.||+|||||||+|||.+..++|||++|.+.-.|.....|.+ ++++|.||.+
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~-----------------i~ivDLPG~Y 61 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHE-----------------IEIVDLPGTY 61 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCce-----------------EEEEeCCCcC
Confidence 459999999999999999999999999999999999999999998866 7899999985
No 332
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.46 E-value=1e-14 Score=156.69 Aligned_cols=158 Identities=18% Similarity=0.226 Sum_probs=119.1
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhh-------hccC
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKP 82 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~-------~~~~ 82 (374)
+..+|+++++ |..|+|||++||||||++++|.+. .+|++|+|.++|.++..+.. ..+.
T Consensus 365 dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rf-----------ydP~~G~V~idG~di~~~~~~~lr~~iglV~ 433 (1228)
T KOG0055|consen 365 DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARF-----------YDPTSGEVLIDGEDIRNLNLKWLRSQIGLVS 433 (1228)
T ss_pred cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHh-----------cCCCCceEEEcCccchhcchHHHHhhcCeee
Confidence 5679998775 566999999999999999999999 99999999999998765432 4567
Q ss_pred CCCccccchHhhHhhhhccc-cCCCC---------------------CCCCCceeEecC------------CCCCchhHH
Q 017295 83 KSAVPAFLEIHDIAGLVRGA-HEGQG---------------------AFEDPDIIHVDD------------SVDPVRDLE 128 (374)
Q Consensus 83 ~~~~~~~~~v~D~~gl~~~~-~~~~~---------------------~~~~~~il~l~~------------~~dP~~~l~ 128 (374)
|+++....++.|+..+++.- ....- ..-...=..+++ ..|| +++
T Consensus 434 QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P--~IL 511 (1228)
T KOG0055|consen 434 QEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNP--KIL 511 (1228)
T ss_pred echhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCC--CEE
Confidence 77766677899998886521 11100 000000111333 5689 999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCCC
Q 017295 129 VISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 187 (374)
Q Consensus 129 ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~~ 187 (374)
++||+++++|.+......+.+.+.. ++.| |.+..+.. +|++ .+|++|+++..|..+
T Consensus 512 LLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRLStIrn-aD~I-~v~~~G~IvE~G~h~ 572 (1228)
T KOG0055|consen 512 LLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRLSTIRN-ADKI-AVMEEGKIVEQGTHD 572 (1228)
T ss_pred EecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeehhhhhc-cCEE-EEEECCEEEEecCHH
Confidence 9999999999998777777776655 5555 99999888 9999 999999999887543
No 333
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.46 E-value=1.1e-13 Score=134.99 Aligned_cols=62 Identities=35% Similarity=0.610 Sum_probs=52.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhc
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~ 100 (374)
...+|+|+|.+|||||||||+|+|..+.++++||+|++|..+.+.+++.. .+.+.|++|+.+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~----------------~i~l~DT~G~~~ 249 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGG----------------EVLLTDTVGFIR 249 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCc----------------eEEEEecCcccc
Confidence 44789999999999999999999988767999999999999999885311 278899999854
No 334
>PRK13409 putative ATPase RIL; Provisional
Probab=99.45 E-value=1.7e-14 Score=149.68 Aligned_cols=146 Identities=17% Similarity=0.219 Sum_probs=104.9
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCC-ccccchHhhHhhhhc
Q 017295 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSA-VPAFLEIHDIAGLVR 100 (374)
Q Consensus 22 ~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~-~~~~~~v~D~~gl~~ 100 (374)
..|..+||+|+||||||||+++|+|. ++|++|.|.++ . ...|.||.. ....+++.|++.+..
T Consensus 363 ~~Geiv~l~G~NGsGKSTLlk~L~Gl-----------~~p~~G~I~~~-~-----~i~y~~Q~~~~~~~~tv~e~l~~~~ 425 (590)
T PRK13409 363 YEGEVIGIVGPNGIGKTTFAKLLAGV-----------LKPDEGEVDPE-L-----KISYKPQYIKPDYDGTVEDLLRSIT 425 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEEe-e-----eEEEecccccCCCCCcHHHHHHHHh
Confidence 45677999999999999999999999 88999999875 2 234556654 345567777765532
Q ss_pred cccCCCC------------CCCCCceeEecC------------CCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHc-
Q 017295 101 GAHEGQG------------AFEDPDIIHVDD------------SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKR- 155 (374)
Q Consensus 101 ~~~~~~~------------~~~~~~il~l~~------------~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~- 155 (374)
....... ...+..+-.+++ +.+| +++++|||++++|+.......+.+.++.++
T Consensus 426 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p--~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~ 503 (590)
T PRK13409 426 DDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDA--DLYLLDEPSAHLDVEQRLAVAKAIRRIAEER 503 (590)
T ss_pred hhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCC--CEEEEeCCccCCCHHHHHHHHHHHHHHHHhC
Confidence 1110000 111223333443 5688 999999999999999999999999988754
Q ss_pred cCc-----cchHHHHHHHHHHHHHHhCCCceeccCCCh
Q 017295 156 SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWKA 188 (374)
Q Consensus 156 ~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~~~ 188 (374)
+.+ |++..+..+||++ .+|+ |++...+..+.
T Consensus 504 g~tviivsHD~~~~~~~aDrv-ivl~-~~~~~~g~~~~ 539 (590)
T PRK13409 504 EATALVVDHDIYMIDYISDRL-MVFE-GEPGKHGHASG 539 (590)
T ss_pred CCEEEEEeCCHHHHHHhCCEE-EEEc-CcceeeeecCC
Confidence 444 9999999999999 7775 57765554443
No 335
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.45 E-value=1.5e-14 Score=131.97 Aligned_cols=148 Identities=11% Similarity=0.117 Sum_probs=97.9
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh-----------hhh
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----------CQL 79 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l-----------~~~ 79 (374)
+.+|+++++ |..++|+|+||||||||+++|+|. ..|++|.|.++|.++... ...
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 82 (218)
T cd03290 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGE-----------MQTLEGKVHWSNKNESEPSFEATRSRNRYSVA 82 (218)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------CCCCCCeEEECCcccccccccccchhhcceEE
Confidence 568888875 456999999999999999999999 789999999998765321 113
Q ss_pred ccCCCC-ccccchHhhHhhhhccccCCC-C------CC--------------CCCceeEecC------------CCCCch
Q 017295 80 FKPKSA-VPAFLEIHDIAGLVRGAHEGQ-G------AF--------------EDPDIIHVDD------------SVDPVR 125 (374)
Q Consensus 80 ~~~~~~-~~~~~~v~D~~gl~~~~~~~~-~------~~--------------~~~~il~l~~------------~~dP~~ 125 (374)
|.+|.. ++ ..++.|+..+........ . .+ .+..+..+++ +.+|
T Consensus 83 ~~~q~~~~~-~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p-- 159 (218)
T cd03290 83 YAAQKPWLL-NATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNT-- 159 (218)
T ss_pred EEcCCCccc-cccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCC--
Confidence 666665 33 457777765532111000 0 00 0011222322 5688
Q ss_pred hHHHHHHHHHhhcHHHHHHHHH--HHHHHHHccCc-----cchHHHHHHHHHHHHHHhCC
Q 017295 126 DLEVISAELRLKDIEFMERRIE--DVEKSMKRSND-----KQLKIEHELCQRVKAWLQDG 178 (374)
Q Consensus 126 ~l~ilde~l~~~D~~~~~~~~~--~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G 178 (374)
+++++|||+.++|.......++ .+....+.+.+ |+...+ ..||++ .+|++|
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~-~~~d~i-~~l~~G 217 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYL-PHADWI-IAMKDG 217 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHH-hhCCEE-EEecCC
Confidence 9999999999999998888777 44444333443 888775 457777 555554
No 336
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.45 E-value=2.6e-14 Score=143.43 Aligned_cols=158 Identities=19% Similarity=0.195 Sum_probs=112.0
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCc----eeEEEeCCcchhhhhh--------
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN----EARVNIPDERFEWLCQ-------- 78 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~----~G~i~~~g~~~~~l~~-------- 78 (374)
..+++++|+ |+.+||||.+||||||+.++|.|+ +++. .|.|.++|.++..+..
T Consensus 22 ~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gl-----------l~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg 90 (539)
T COG1123 22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGL-----------LPEGGRITSGEVILDGRDLLGLSEREMRKLRG 90 (539)
T ss_pred eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhcc-----------CCCCCcccceEEEECCcchhcCCHHHHHHhcc
Confidence 468899886 456999999999999999999999 4444 8999999986543322
Q ss_pred ---hccCCCC---ccccchHhhHhhhhccccCCC-C--------------CCCC-----CceeEecC------------C
Q 017295 79 ---LFKPKSA---VPAFLEIHDIAGLVRGAHEGQ-G--------------AFED-----PDIIHVDD------------S 120 (374)
Q Consensus 79 ---~~~~~~~---~~~~~~v~D~~gl~~~~~~~~-~--------------~~~~-----~~il~l~~------------~ 120 (374)
.+.+|+. +.+.+++-+.+.-....|... . .+.+ ...-.+++ +
T Consensus 91 ~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa 170 (539)
T COG1123 91 KRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALA 170 (539)
T ss_pred ccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHh
Confidence 3556653 333333333222111111100 0 1111 11122333 6
Q ss_pred CCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc------cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 121 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND------KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 121 ~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~------H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
.+| ++++.|||+..+|.....++++.++.+.++.++ |++..+..+||+| .+|.+|+++..|+.
T Consensus 171 ~~P--~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv-~Vm~~G~iVE~G~~ 239 (539)
T COG1123 171 LKP--KLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRV-VVMYKGEIVETGPT 239 (539)
T ss_pred CCC--CEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeE-EEEECCEEEEecCH
Confidence 799 999999999999999999999999998866543 9999999999999 99999999987654
No 337
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.45 E-value=1.1e-14 Score=149.96 Aligned_cols=149 Identities=19% Similarity=0.249 Sum_probs=105.6
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCC---cc
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSA---VP 87 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~---~~ 87 (374)
+.+|+++++ |..++|+|+||||||||+++|+|. ..|++|.|.+++.. ...|.+|.. ++
T Consensus 332 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~-----------~~p~~G~i~~~~~~----~i~~~~q~~~~~~~ 396 (530)
T PRK15064 332 GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGE-----------LEPDSGTVKWSENA----NIGYYAQDHAYDFE 396 (530)
T ss_pred ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeEEEECCce----EEEEEcccccccCC
Confidence 467888876 456999999999999999999999 78999999998742 123555542 33
Q ss_pred ccchHhhHhhhhccccCCCC---------CC----CCCceeEecC------------CCCCchhHHHHHHHHHhhcHHHH
Q 017295 88 AFLEIHDIAGLVRGAHEGQG---------AF----EDPDIIHVDD------------SVDPVRDLEVISAELRLKDIEFM 142 (374)
Q Consensus 88 ~~~~v~D~~gl~~~~~~~~~---------~~----~~~~il~l~~------------~~dP~~~l~ilde~l~~~D~~~~ 142 (374)
..+++.+++.+......... .+ .+..+-.+++ +.+| +++++|||++++|+...
T Consensus 397 ~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p--~lllLDEPt~~LD~~~~ 474 (530)
T PRK15064 397 NDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKP--NVLVMDEPTNHMDMESI 474 (530)
T ss_pred CCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCC--CEEEEcCCCCCCCHHHH
Confidence 44566666543211000000 11 1222333333 5688 99999999999999999
Q ss_pred HHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCce-ecc
Q 017295 143 ERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDV-RLG 184 (374)
Q Consensus 143 ~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv-~~~ 184 (374)
+.+.+.+.+. +++ |+...+..+||++ .+|++|+++ ..+
T Consensus 475 ~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i-~~l~~g~i~~~~g 518 (530)
T PRK15064 475 ESLNMALEKY---EGTLIFVSHDREFVSSLATRI-IEITPDGVVDFSG 518 (530)
T ss_pred HHHHHHHHHC---CCEEEEEeCCHHHHHHhCCEE-EEEECCeEEEcCC
Confidence 9988888764 233 9999999999999 889999886 444
No 338
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.45 E-value=1e-14 Score=155.05 Aligned_cols=153 Identities=16% Similarity=0.186 Sum_probs=109.7
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhh-------hccCC
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPK 83 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~-------~~~~~ 83 (374)
+++|+++++ |.+++|+|+||||||||+++|+|. .+|++|.|.++|.++..+.. .|.+|
T Consensus 494 ~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl-----------~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q 562 (711)
T TIGR00958 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNL-----------YQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQ 562 (711)
T ss_pred CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhc-----------cCCCCCEEEECCEEHHhcCHHHHHhhceEEec
Confidence 568999886 556999999999999999999999 89999999999998765432 57888
Q ss_pred CCccccchHhhHhhhhccccCCCC---------------CCCC--Cce-----eEecC------------CCCCchhHHH
Q 017295 84 SAVPAFLEIHDIAGLVRGAHEGQG---------------AFED--PDI-----IHVDD------------SVDPVRDLEV 129 (374)
Q Consensus 84 ~~~~~~~~v~D~~gl~~~~~~~~~---------------~~~~--~~i-----l~l~~------------~~dP~~~l~i 129 (374)
+.....-++.|++.++......+. .+.+ +.. ..+++ ..+| ++++
T Consensus 563 ~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p--~ILI 640 (711)
T TIGR00958 563 EPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKP--RVLI 640 (711)
T ss_pred CccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCC--CEEE
Confidence 875556788888877532111000 0000 000 11222 4688 9999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 130 ISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 130 lde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+|||++.+|.+..+...+ ... .++.| |.+..+ ..+|+| .+|++|+++..|+
T Consensus 641 LDEpTSaLD~~te~~i~~-~~~--~~~~TvIiItHrl~~i-~~aD~I-ivL~~G~ive~Gt 696 (711)
T TIGR00958 641 LDEATSALDAECEQLLQE-SRS--RASRTVLLIAHRLSTV-ERADQI-LVLKKGSVVEMGT 696 (711)
T ss_pred EEccccccCHHHHHHHHH-hhc--cCCCeEEEEeccHHHH-HhCCEE-EEEECCEEEEeeC
Confidence 999999999987666555 221 13444 988764 569999 8999999987775
No 339
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.44 E-value=2e-14 Score=122.90 Aligned_cols=122 Identities=22% Similarity=0.237 Sum_probs=85.7
Q ss_pred cccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccch
Q 017295 16 PILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLE 91 (374)
Q Consensus 16 ~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~ 91 (374)
.+|+++++ |..++|+|+||||||||+++|+|. .+|++|.|.++|.. ...|.+| +. .-+
T Consensus 14 ~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~-----------~~~~~G~i~~~~~~----~i~~~~~--lS-~G~ 75 (144)
T cd03221 14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGE-----------LEPDEGIVTWGSTV----KIGYFEQ--LS-GGE 75 (144)
T ss_pred eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCC-----------CCCCceEEEECCeE----EEEEEcc--CC-HHH
Confidence 57777765 456999999999999999999999 78999999998842 1122222 00 000
Q ss_pred HhhHhhhhccccCCCCCCCCCceeEecCCCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHH
Q 017295 92 IHDIAGLVRGAHEGQGAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHE 166 (374)
Q Consensus 92 v~D~~gl~~~~~~~~~~~~~~~il~l~~~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~ 166 (374)
..-+.+.+.. +.+| ++.++|||+.++|........+.+.+.. .+ |+.+.+..
T Consensus 76 -~~rv~laral-----------------~~~p--~illlDEP~~~LD~~~~~~l~~~l~~~~---~til~~th~~~~~~~ 132 (144)
T cd03221 76 -KMRLALAKLL-----------------LENP--NLLLLDEPTNHLDLESIEALEEALKEYP---GTVILVSHDRYFLDQ 132 (144)
T ss_pred -HHHHHHHHHH-----------------hcCC--CEEEEeCCccCCCHHHHHHHHHHHHHcC---CEEEEEECCHHHHHH
Confidence 0001111110 3457 8999999999999999998888887642 23 99988888
Q ss_pred HHHHHHHHHhCCC
Q 017295 167 LCQRVKAWLQDGK 179 (374)
Q Consensus 167 ~~d~v~~~L~~G~ 179 (374)
+||++ .+|++|+
T Consensus 133 ~~d~v-~~l~~g~ 144 (144)
T cd03221 133 VATKI-IELEDGK 144 (144)
T ss_pred hCCEE-EEEeCCC
Confidence 88888 6666653
No 340
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.44 E-value=1.2e-14 Score=150.85 Aligned_cols=155 Identities=14% Similarity=0.171 Sum_probs=111.6
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-------hhccCC
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPK 83 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-------~~~~~~ 83 (374)
+.+|+++++ |..++|+|+||||||||+++|+|. .+|++|.|.++|.++..+. -.|.+|
T Consensus 328 ~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~-----------~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q 396 (569)
T PRK10789 328 HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRH-----------FDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQ 396 (569)
T ss_pred CccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcc-----------cCCCCCEEEECCEEHhhCCHHHHHhheEEEcc
Confidence 468888875 566999999999999999999999 8899999999998875432 147788
Q ss_pred CCccccchHhhHhhhhccccCCCC--------CC-------CC-------CceeEecC------------CCCCchhHHH
Q 017295 84 SAVPAFLEIHDIAGLVRGAHEGQG--------AF-------ED-------PDIIHVDD------------SVDPVRDLEV 129 (374)
Q Consensus 84 ~~~~~~~~v~D~~gl~~~~~~~~~--------~~-------~~-------~~il~l~~------------~~dP~~~l~i 129 (374)
+.....-++.|+..+......... .+ .+ ..-..+++ ..+| ++++
T Consensus 397 ~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~--~ill 474 (569)
T PRK10789 397 TPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNA--EILI 474 (569)
T ss_pred CCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCC--CEEE
Confidence 763334588888766432110000 00 00 00011222 5689 9999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 130 ISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 130 lde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+|||++++|....+...+.+.... ++.+ |+...+ ..+|++ .+|++|+++..|+
T Consensus 475 lDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~~~-~~~d~i-~~l~~G~i~~~g~ 532 (569)
T PRK10789 475 LDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLSAL-TEASEI-LVMQHGHIAQRGN 532 (569)
T ss_pred EECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchhHH-HcCCEE-EEEeCCEEEEecC
Confidence 999999999999999988887764 4444 988664 558999 8899999987664
No 341
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.44 E-value=1.2e-14 Score=151.47 Aligned_cols=155 Identities=19% Similarity=0.243 Sum_probs=113.0
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhh-------hccCC
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPK 83 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~-------~~~~~ 83 (374)
+.+|++++. |..++|+|+||||||||+++|+|. .+|++|.|.++|.++..+.. .|.||
T Consensus 348 ~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl-----------~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q 416 (588)
T PRK13657 348 RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRV-----------FDPQSGRILIDGTDIRTVTRASLRRNIAVVFQ 416 (588)
T ss_pred CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcC-----------cCCCCCEEEECCEEhhhCCHHHHHhheEEEec
Confidence 468888875 466999999999999999999999 88999999999988765332 57888
Q ss_pred CCccccchHhhHhhhhccccCCCC---------------CCCC--Cce-----eEecC------------CCCCchhHHH
Q 017295 84 SAVPAFLEIHDIAGLVRGAHEGQG---------------AFED--PDI-----IHVDD------------SVDPVRDLEV 129 (374)
Q Consensus 84 ~~~~~~~~v~D~~gl~~~~~~~~~---------------~~~~--~~i-----l~l~~------------~~dP~~~l~i 129 (374)
+.....-++.|+..+......... .+.+ +.. ..+++ ..+| ++++
T Consensus 417 ~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~--~ili 494 (588)
T PRK13657 417 DAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDP--PILI 494 (588)
T ss_pred CcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCC--CEEE
Confidence 874445688888877532110000 0000 000 01222 4688 9999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 130 ISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 130 lde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+|||++.+|....+.+++.+.... ++++ |+... ...+|++ .+|++|+++..++
T Consensus 495 LDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~~-~~~~D~i-i~l~~G~i~~~g~ 552 (588)
T PRK13657 495 LDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLST-VRNADRI-LVFDNGRVVESGS 552 (588)
T ss_pred EeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHHH-HHhCCEE-EEEECCEEEEeCC
Confidence 999999999999999988887764 3444 98865 4669999 8999999886654
No 342
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.44 E-value=1.8e-14 Score=148.49 Aligned_cols=152 Identities=16% Similarity=0.231 Sum_probs=104.2
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCC-ccc
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSA-VPA 88 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~-~~~ 88 (374)
++.+|+++++. ..+||+|+||||||||+++|+|. .+|+.|.|.+++.. ...|.+|.. .+.
T Consensus 13 ~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl-----------~~p~~G~i~~~~~~----~i~~~~q~~~~~~ 77 (530)
T PRK15064 13 AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGD-----------LEPSAGNVSLDPNE----RLGKLRQDQFAFE 77 (530)
T ss_pred CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEecCCC----EEEEEeccCCcCC
Confidence 45689988864 56999999999999999999999 78999999998632 123444443 333
Q ss_pred cchHhhHhhhhcc--------------cc--------------------CC-C---C--------CCC----CCceeEec
Q 017295 89 FLEIHDIAGLVRG--------------AH--------------------EG-Q---G--------AFE----DPDIIHVD 118 (374)
Q Consensus 89 ~~~v~D~~gl~~~--------------~~--------------------~~-~---~--------~~~----~~~il~l~ 118 (374)
.+++.|++.+... .. .+ . . .+. +..+-.++
T Consensus 78 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS 157 (530)
T PRK15064 78 EFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVA 157 (530)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcC
Confidence 4455544432100 00 00 0 0 110 11222333
Q ss_pred C------------CCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCce
Q 017295 119 D------------SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDV 181 (374)
Q Consensus 119 ~------------~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv 181 (374)
+ +.+| +++++|||++++|+.......+.+.+ .+.+ |+...+..+||++ .+|++|+++
T Consensus 158 gGq~qrv~lA~aL~~~p--~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~~~~~~~~d~i-~~l~~g~i~ 231 (530)
T PRK15064 158 PGWKLRVLLAQALFSNP--DILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDRHFLNSVCTHM-ADLDYGELR 231 (530)
T ss_pred HHHHHHHHHHHHHhcCC--CEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCHHHHHhhcceE-EEEeCCEEE
Confidence 3 5689 99999999999999999988888753 3443 9999999999999 999999984
Q ss_pred -eccCC
Q 017295 182 -RLGDW 186 (374)
Q Consensus 182 -~~~~~ 186 (374)
..+++
T Consensus 232 ~~~g~~ 237 (530)
T PRK15064 232 VYPGNY 237 (530)
T ss_pred EecCCH
Confidence 44544
No 343
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.44 E-value=9.6e-15 Score=138.44 Aligned_cols=148 Identities=17% Similarity=0.231 Sum_probs=98.3
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCC-cccc
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSA-VPAF 89 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~-~~~~ 89 (374)
+.+|+++++ |..+||+|+||||||||+++|+|. ++|++|.|.++|. + .|.+|.. ++.
T Consensus 50 ~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl-----------~~p~~G~I~i~g~-i-----~yv~q~~~l~~- 111 (282)
T cd03291 50 APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGE-----------LEPSEGKIKHSGR-I-----SFSSQFSWIMP- 111 (282)
T ss_pred ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCE-E-----EEEeCcccccc-
Confidence 468888775 456999999999999999999999 8899999999872 2 3444443 222
Q ss_pred chHhhHhhhhccccC----------CCC----CCC-------CCceeEecC------------CCCCchhHHHHHHHHHh
Q 017295 90 LEIHDIAGLVRGAHE----------GQG----AFE-------DPDIIHVDD------------SVDPVRDLEVISAELRL 136 (374)
Q Consensus 90 ~~v~D~~gl~~~~~~----------~~~----~~~-------~~~il~l~~------------~~dP~~~l~ilde~l~~ 136 (374)
.++.|+..+...... +.. .+. ......+++ +.+| +++++|||+.+
T Consensus 112 ~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p--~iLiLDEPt~g 189 (282)
T cd03291 112 GTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDA--DLYLLDSPFGY 189 (282)
T ss_pred cCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCC--CEEEEECCCcc
Confidence 255555433211000 000 000 000112222 5688 99999999999
Q ss_pred hcHHHHHHHHHHH-HHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 137 KDIEFMERRIEDV-EKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 137 ~D~~~~~~~~~~i-~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+|+.......+.+ .... ++.+ |++..+ ..||++ .+|++|+++..++
T Consensus 190 LD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~~~-~~~d~i-~~l~~G~i~~~g~ 241 (282)
T cd03291 190 LDVFTEKEIFESCVCKLM-ANKTRILVTSKMEHL-KKADKI-LILHEGSSYFYGT 241 (282)
T ss_pred CCHHHHHHHHHHHHHHhh-CCCEEEEEeCChHHH-HhCCEE-EEEECCEEEEECC
Confidence 9999888777754 3433 3443 988876 579999 8899999876654
No 344
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.44 E-value=1.2e-14 Score=151.37 Aligned_cols=155 Identities=17% Similarity=0.143 Sum_probs=111.6
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-------hhccCC
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPK 83 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-------~~~~~~ 83 (374)
+.+|+++++ |..++|+|+||||||||+++|+|. .+|++|.|.++|.++..+. ..|.+|
T Consensus 348 ~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q 416 (585)
T TIGR01192 348 SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRV-----------YDPTVGQILIDGIDINTVTRESLRKSIATVFQ 416 (585)
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccC-----------CCCCCCEEEECCEEhhhCCHHHHHhheEEEcc
Confidence 457888775 456999999999999999999999 8899999999998765432 147788
Q ss_pred CCccccchHhhHhhhhccccCCCC--------CC--------------CCCceeEecC------------CCCCchhHHH
Q 017295 84 SAVPAFLEIHDIAGLVRGAHEGQG--------AF--------------EDPDIIHVDD------------SVDPVRDLEV 129 (374)
Q Consensus 84 ~~~~~~~~v~D~~gl~~~~~~~~~--------~~--------------~~~~il~l~~------------~~dP~~~l~i 129 (374)
+......++.|+..+......... .. .......+++ ..+| ++++
T Consensus 417 ~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p--~ili 494 (585)
T TIGR01192 417 DAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNA--PILV 494 (585)
T ss_pred CCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCC--CEEE
Confidence 763334678888776422100000 00 0000111222 5689 9999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 130 ISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 130 lde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+|||++++|........+.+.+.. ++.+ |+...+ ..+|++ .+|++|+++..|+
T Consensus 495 lDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~~~-~~~d~i-~~l~~G~i~~~g~ 552 (585)
T TIGR01192 495 LDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLSTV-RNADLV-LFLDQGRLIEKGS 552 (585)
T ss_pred EECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChHHH-HcCCEE-EEEECCEEEEECC
Confidence 999999999999999888887664 4444 998776 459999 8999999887664
No 345
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.44 E-value=4.6e-14 Score=159.03 Aligned_cols=161 Identities=15% Similarity=0.141 Sum_probs=117.2
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccC---CceeEEEeCCcchhh-hh--hhccCC
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE---PNEARVNIPDERFEW-LC--QLFKPK 83 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~---p~~G~i~~~g~~~~~-l~--~~~~~~ 83 (374)
.+.+|++++.. ..+||+|+||||||||+|+|+|. .+ |++|.|.++|.++.. +. ..|.+|
T Consensus 775 ~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~-----------~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q 843 (1394)
T TIGR00956 775 KRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAER-----------VTTGVITGGDRLVNGRPLDSSFQRSIGYVQQ 843 (1394)
T ss_pred CcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcceeEEEECCEECChhhhcceeeecc
Confidence 45789988764 45999999999999999999998 44 688999999987632 11 257777
Q ss_pred CC-ccccchHhhHhhhhccccC--CCC---------------CC---CCCcee----EecC------------CCCCchh
Q 017295 84 SA-VPAFLEIHDIAGLVRGAHE--GQG---------------AF---EDPDII----HVDD------------SVDPVRD 126 (374)
Q Consensus 84 ~~-~~~~~~v~D~~gl~~~~~~--~~~---------------~~---~~~~il----~l~~------------~~dP~~~ 126 (374)
.. ..+.+++.|++.+...... ... .+ .+..+- .+++ +.+| +
T Consensus 844 ~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P--~ 921 (1394)
T TIGR00956 844 QDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKP--K 921 (1394)
T ss_pred cccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCC--C
Confidence 64 5667888888876432111 000 01 111111 1332 4678 8
Q ss_pred -HHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHH-HHHHHHHHHHHHhCC-CceeccCCCh
Q 017295 127 -LEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKI-EHELCQRVKAWLQDG-KDVRLGDWKA 188 (374)
Q Consensus 127 -l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~-~~~~~d~v~~~L~~G-~iv~~~~~~~ 188 (374)
++++|||++++|......+++.++++++++.+ |++.. +...+|++ .+|++| +++..|+..+
T Consensus 922 ~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~v-l~L~~GG~iv~~G~~~~ 990 (1394)
T TIGR00956 922 LLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRL-LLLQKGGQTVYFGDLGE 990 (1394)
T ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEE-EEEcCCCEEEEECCccc
Confidence 89999999999999999999999988766655 98876 35779999 889887 9988887643
No 346
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.43 E-value=3e-14 Score=148.02 Aligned_cols=155 Identities=20% Similarity=0.229 Sum_probs=113.2
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhh-------hccCC
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPK 83 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~-------~~~~~ 83 (374)
+++|++++. |.+++|+|+||||||||+++|+|. .+|++|.|.++|.++..+.. .|.||
T Consensus 345 ~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl-----------~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q 413 (571)
T TIGR02203 345 RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRF-----------YEPDSGQILLDGHDLADYTLASLRRQVALVSQ 413 (571)
T ss_pred CccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhc-----------cCCCCCeEEECCEeHHhcCHHHHHhhceEEcc
Confidence 568888876 566999999999999999999999 89999999999988764332 58888
Q ss_pred CCccccchHhhHhhhhcc--ccCCC--------C------CCCC--Ccee-----EecC------------CCCCchhHH
Q 017295 84 SAVPAFLEIHDIAGLVRG--AHEGQ--------G------AFED--PDII-----HVDD------------SVDPVRDLE 128 (374)
Q Consensus 84 ~~~~~~~~v~D~~gl~~~--~~~~~--------~------~~~~--~~il-----~l~~------------~~dP~~~l~ 128 (374)
+.....-++.|++.+... ..... + .+.+ +..+ .+++ ..+| +++
T Consensus 414 ~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~--~il 491 (571)
T TIGR02203 414 DVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDA--PIL 491 (571)
T ss_pred CcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCC--CEE
Confidence 875555688888776532 11000 0 0000 0000 1222 4678 999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 129 VISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 129 ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
++|||++.+|....+.+++.+.+.. ++++ |+... ...||+| ..|++|+++..++
T Consensus 492 lLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~~-~~~~D~i-i~l~~g~i~~~g~ 550 (571)
T TIGR02203 492 ILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLST-IEKADRI-VVMDDGRIVERGT 550 (571)
T ss_pred EEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhhHH-HHhCCEE-EEEeCCEEEeeCC
Confidence 9999999999999999988888764 3444 88755 5679999 8889998876553
No 347
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.43 E-value=2.9e-14 Score=148.30 Aligned_cols=155 Identities=18% Similarity=0.251 Sum_probs=112.7
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-------hhccCC
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPK 83 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-------~~~~~~ 83 (374)
+.+|+++++ |..++|+|+||||||||+++|+|. .+|.+|+|.++|.++.... -.|.||
T Consensus 353 ~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl-----------~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q 421 (576)
T TIGR02204 353 QPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRF-----------YDPQSGRILLDGVDLRQLDPAELRARMALVPQ 421 (576)
T ss_pred CccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhc-----------cCCCCCEEEECCEEHHhcCHHHHHHhceEEcc
Confidence 468888875 556999999999999999999999 8899999999998775432 257888
Q ss_pred CCccccchHhhHhhhhccccCCCC---------------CCCC--Cc-----eeEecC------------CCCCchhHHH
Q 017295 84 SAVPAFLEIHDIAGLVRGAHEGQG---------------AFED--PD-----IIHVDD------------SVDPVRDLEV 129 (374)
Q Consensus 84 ~~~~~~~~v~D~~gl~~~~~~~~~---------------~~~~--~~-----il~l~~------------~~dP~~~l~i 129 (374)
+.....-++.|+..+......... .+.. +. -..+++ ..+| ++++
T Consensus 422 ~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~--~ili 499 (576)
T TIGR02204 422 DPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDA--PILL 499 (576)
T ss_pred CCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCC--CeEE
Confidence 875556688888876432110000 1100 00 011222 4578 9999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 130 ISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 130 lde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+|||++.+|....+..++.+.... ++.+ |+... ...+|++ ..|++|+++..++
T Consensus 500 lDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~~-~~~~d~v-i~l~~g~~~~~g~ 557 (576)
T TIGR02204 500 LDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLAT-VLKADRI-VVMDQGRIVAQGT 557 (576)
T ss_pred EeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchHH-HHhCCEE-EEEECCEEEeeec
Confidence 999999999999888888888764 3444 98855 4568999 8899999887654
No 348
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=1.6e-14 Score=143.05 Aligned_cols=156 Identities=15% Similarity=0.157 Sum_probs=110.7
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhh-------hccC
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKP 82 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~-------~~~~ 82 (374)
+++||+++++ |.+|||||+|||||||++|+|.+. .+ .+|.|.++|.++..... .|+|
T Consensus 364 k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF-----------~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VP 431 (591)
T KOG0057|consen 364 KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRF-----------FD-YSGSILIDGQDIKEVSLESLRQSIGVVP 431 (591)
T ss_pred CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHH-----------hc-cCCcEEECCeeHhhhChHHhhhheeEeC
Confidence 4569999886 566999999999999999999999 77 99999999998865432 5899
Q ss_pred CCCccccchHhhHhhhhccccCCCC---------------CC-------CCCceeEecC------------CCCCchhHH
Q 017295 83 KSAVPAFLEIHDIAGLVRGAHEGQG---------------AF-------EDPDIIHVDD------------SVDPVRDLE 128 (374)
Q Consensus 83 ~~~~~~~~~v~D~~gl~~~~~~~~~---------------~~-------~~~~il~l~~------------~~dP~~~l~ 128 (374)
|+....+-++..++..+......+. .+ -...-.++++ .-|| ++.
T Consensus 432 Qd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda--~Il 509 (591)
T KOG0057|consen 432 QDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDA--PIL 509 (591)
T ss_pred CcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCC--CeE
Confidence 9875545566666555321100000 00 0000112222 3467 888
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 129 VISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 129 ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
++||+++.+|-++-..+++.+.+.. .+.| |++.. ..-||+| .+|++|++...|+.
T Consensus 510 ~~DEaTS~LD~~TE~~i~~~i~~~~-~~rTvI~IvH~l~l-l~~~DkI-~~l~nG~v~e~gth 569 (591)
T KOG0057|consen 510 LLDEATSALDSETEREILDMIMDVM-SGRTVIMIVHRLDL-LKDFDKI-IVLDNGTVKEYGTH 569 (591)
T ss_pred EecCcccccchhhHHHHHHHHHHhc-CCCeEEEEEecchh-HhcCCEE-EEEECCeeEEeccH
Confidence 9999999999998888888887743 4455 88765 4458999 99999999877654
No 349
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.42 E-value=3.2e-14 Score=147.30 Aligned_cols=153 Identities=16% Similarity=0.175 Sum_probs=107.7
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCC-ccc
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSA-VPA 88 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~-~~~ 88 (374)
++.+|+++++. ..+||+|+||||||||+++|+|. .+|++|.|.+++.. ...|.+|.. +++
T Consensus 19 ~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~-----------~~p~~G~i~~~~~~----~i~~v~Q~~~~~~ 83 (556)
T PRK11819 19 KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV-----------DKEFEGEARPAPGI----KVGYLPQEPQLDP 83 (556)
T ss_pred CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEecCCC----EEEEEecCCCCCC
Confidence 46789998864 56999999999999999999999 78999999986421 124556654 444
Q ss_pred cchHhhHhhhhcc----------------ccC---------------------C-C--C----------CC--CCCceeE
Q 017295 89 FLEIHDIAGLVRG----------------AHE---------------------G-Q--G----------AF--EDPDIIH 116 (374)
Q Consensus 89 ~~~v~D~~gl~~~----------------~~~---------------------~-~--~----------~~--~~~~il~ 116 (374)
.+++.|++.+... ... + . . .+ .+..+-.
T Consensus 84 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 163 (556)
T PRK11819 84 EKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTK 163 (556)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchhh
Confidence 5677776643210 000 0 0 0 00 0111222
Q ss_pred ecC------------CCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCC
Q 017295 117 VDD------------SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGK 179 (374)
Q Consensus 117 l~~------------~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~ 179 (374)
+++ ..+| +++++|||++++|+.......+.+.+.. ++ |+.+.+..+||++ .+|++|+
T Consensus 164 LSgGqkqrv~la~al~~~p--~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~tviiisHd~~~~~~~~d~i-~~l~~g~ 237 (556)
T PRK11819 164 LSGGERRRVALCRLLLEKP--DMLLLDEPTNHLDAESVAWLEQFLHDYP---GTVVAVTHDRYFLDNVAGWI-LELDRGR 237 (556)
T ss_pred cCHHHHHHHHHHHHHhCCC--CEEEEcCCCCcCChHHHHHHHHHHHhCC---CeEEEEeCCHHHHHhhcCeE-EEEeCCE
Confidence 333 5689 9999999999999999998888887642 23 9999999999999 9999999
Q ss_pred ce-eccCCC
Q 017295 180 DV-RLGDWK 187 (374)
Q Consensus 180 iv-~~~~~~ 187 (374)
++ ..++++
T Consensus 238 i~~~~g~~~ 246 (556)
T PRK11819 238 GIPWEGNYS 246 (556)
T ss_pred EEEecCCHH
Confidence 76 445444
No 350
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.42 E-value=3.4e-14 Score=149.42 Aligned_cols=158 Identities=17% Similarity=0.102 Sum_probs=113.7
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh-----------hhh
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----------CQL 79 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l-----------~~~ 79 (374)
+.+|+++++ |..++|+|+||||||||+++|+|. .+|++|.+.++|.++... ...
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl-----------~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~ 89 (648)
T PRK10535 21 VEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCL-----------DKPTSGTYRVAGQDVATLDADALAQLRREHFG 89 (648)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCeEEEECCEEcCcCCHHHHHHHHhccEE
Confidence 468988765 556999999999999999999999 789999999999876431 114
Q ss_pred ccCCCC-ccccchHhhHhhhhccccC---CCC--------------CCCCCceeEecC------------CCCCchhHHH
Q 017295 80 FKPKSA-VPAFLEIHDIAGLVRGAHE---GQG--------------AFEDPDIIHVDD------------SVDPVRDLEV 129 (374)
Q Consensus 80 ~~~~~~-~~~~~~v~D~~gl~~~~~~---~~~--------------~~~~~~il~l~~------------~~dP~~~l~i 129 (374)
|.+|.. +++.+++.|+..+...... ... ...+.....+++ +.+| ++++
T Consensus 90 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P--~lLl 167 (648)
T PRK10535 90 FIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGG--QVIL 167 (648)
T ss_pred EEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCC--CEEE
Confidence 666665 5555677776654211100 000 011112222222 5689 9999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCCC
Q 017295 130 ISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 187 (374)
Q Consensus 130 lde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~~ 187 (374)
+|||+.++|....+...+.+.++.+++.+ |+.... ..||++ .+|++|+++..++.+
T Consensus 168 lDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~-~~~d~i-~~l~~G~i~~~g~~~ 228 (648)
T PRK10535 168 ADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVA-AQAERV-IEIRDGEIVRNPPAQ 228 (648)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHH-HhCCEE-EEEECCEEEeecCcc
Confidence 99999999999999999999887655544 998866 469999 999999998777654
No 351
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.42 E-value=3.1e-14 Score=133.15 Aligned_cols=151 Identities=17% Similarity=0.216 Sum_probs=95.2
Q ss_pred ccccccc---CCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEE-----------eCCcchhhhhh---
Q 017295 16 PILGRFS---SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVN-----------IPDERFEWLCQ--- 78 (374)
Q Consensus 16 ~vL~~i~---~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~-----------~~g~~~~~l~~--- 78 (374)
.+|++++ .|..++|+|+||||||||+++|+|. .+|++|.|. ++|.++.....
T Consensus 15 ~~l~~i~~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl-----------~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~ 83 (255)
T cd03236 15 FKLHRLPVPREGQVLGLVGPNGIGKSTALKILAGK-----------LKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLL 83 (255)
T ss_pred hhhhcCCCCCCCCEEEEECCCCCCHHHHHHHHhCC-----------cCCCCceEeeccccchhhhhccCchhhhhhHHhh
Confidence 4666665 4667999999999999999999999 889999996 66765532110
Q ss_pred ------hccCCCC-ccccchHhhHhhhh-cccc-----------CCCCCCCCCceeEecC------------CCCCchhH
Q 017295 79 ------LFKPKSA-VPAFLEIHDIAGLV-RGAH-----------EGQGAFEDPDIIHVDD------------SVDPVRDL 127 (374)
Q Consensus 79 ------~~~~~~~-~~~~~~v~D~~gl~-~~~~-----------~~~~~~~~~~il~l~~------------~~dP~~~l 127 (374)
.+.++.. ..+ ..+.+++... .... .+...+.+..+..+++ +.+| ++
T Consensus 84 ~~~~~i~~~~~~~~~~~-~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p--~i 160 (255)
T cd03236 84 EGDVKVIVKPQYVDLIP-KAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDA--DF 160 (255)
T ss_pred hcccceeeecchhccCc-hHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCC--CE
Confidence 1223322 111 1222222110 0000 0000000111111221 4678 99
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCcee
Q 017295 128 EVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVR 182 (374)
Q Consensus 128 ~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~ 182 (374)
.++|||++++|..........+.+..+++.+ |++..+..+||++ .+|+ |++..
T Consensus 161 lllDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i-~~l~-~~~~~ 218 (255)
T cd03236 161 YFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYI-HCLY-GEPGA 218 (255)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEE-EEEC-CCCCc
Confidence 9999999999999999999988887755554 9999988899999 6664 55543
No 352
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.41 E-value=3.7e-14 Score=146.73 Aligned_cols=153 Identities=15% Similarity=0.200 Sum_probs=107.8
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCC-ccc
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSA-VPA 88 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~-~~~ 88 (374)
++.+|+++++ |..++|+|+|||||||||++|+|. .+|++|.|.+++.. ...|.+|.. ++.
T Consensus 17 ~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~-----------~~p~~G~i~~~~~~----~i~~v~Q~~~~~~ 81 (552)
T TIGR03719 17 KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV-----------DKEFNGEARPAPGI----KVGYLPQEPQLDP 81 (552)
T ss_pred CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEecCCC----EEEEEeccCCCCC
Confidence 3568999875 456999999999999999999999 78999999986521 224556654 444
Q ss_pred cchHhhHhhhhcc-----------------ccCCC-------------------------C--------CC--CCCceeE
Q 017295 89 FLEIHDIAGLVRG-----------------AHEGQ-------------------------G--------AF--EDPDIIH 116 (374)
Q Consensus 89 ~~~v~D~~gl~~~-----------------~~~~~-------------------------~--------~~--~~~~il~ 116 (374)
.+++.|++.+... ..... . .+ .+..+-.
T Consensus 82 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 161 (552)
T TIGR03719 82 TKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTK 161 (552)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhh
Confidence 5677776654210 00000 0 00 1122223
Q ss_pred ecC------------CCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCC
Q 017295 117 VDD------------SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGK 179 (374)
Q Consensus 117 l~~------------~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~ 179 (374)
+++ +.+| +++++|||++.+|+.......+.+.+.. ++ |+...+..+||++ .+|++|+
T Consensus 162 LSgGqkqrv~la~al~~~p--~lLLLDEPt~~LD~~~~~~l~~~L~~~~---~tvIiisHd~~~~~~~~d~v-~~l~~g~ 235 (552)
T TIGR03719 162 LSGGERRRVALCRLLLSKP--DMLLLDEPTNHLDAESVAWLEQHLQEYP---GTVVAVTHDRYFLDNVAGWI-LELDRGR 235 (552)
T ss_pred cCHHHHHHHHHHHHHhcCC--CEEEEcCCCCCCChHHHHHHHHHHHhCC---CeEEEEeCCHHHHHhhcCeE-EEEECCE
Confidence 333 5689 9999999999999999998888876542 23 9999999999999 8999999
Q ss_pred ce-eccCCC
Q 017295 180 DV-RLGDWK 187 (374)
Q Consensus 180 iv-~~~~~~ 187 (374)
++ ..++.+
T Consensus 236 i~~~~g~~~ 244 (552)
T TIGR03719 236 GIPWEGNYS 244 (552)
T ss_pred EEEecCCHH
Confidence 75 445544
No 353
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.41 E-value=1.6e-14 Score=151.54 Aligned_cols=152 Identities=16% Similarity=0.212 Sum_probs=102.1
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCC-cchhhhhhhccCCCC---
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD-ERFEWLCQLFKPKSA--- 85 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g-~~~~~l~~~~~~~~~--- 85 (374)
++.+|+++++ |..+||+|+||||||||+++|+|. ..|++|.|.+.+ ..+. |.+|..
T Consensus 324 ~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~-----------~~p~~G~i~~~~~~~ig-----y~~Q~~~~~ 387 (638)
T PRK10636 324 DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGE-----------LAPVSGEIGLAKGIKLG-----YFAQHQLEF 387 (638)
T ss_pred CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCeEEECCCEEEE-----EecCcchhh
Confidence 3568888765 556999999999999999999999 889999999863 2232 333321
Q ss_pred ccccchHhhHhhhhccccCCCC--------CCC----CCceeEecC------------CCCCchhHHHHHHHHHhhcHHH
Q 017295 86 VPAFLEIHDIAGLVRGAHEGQG--------AFE----DPDIIHVDD------------SVDPVRDLEVISAELRLKDIEF 141 (374)
Q Consensus 86 ~~~~~~v~D~~gl~~~~~~~~~--------~~~----~~~il~l~~------------~~dP~~~l~ilde~l~~~D~~~ 141 (374)
+....++.+............. .|. +..+-.+++ +.+| +++++|||++++|+..
T Consensus 388 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p--~lLlLDEPt~~LD~~~ 465 (638)
T PRK10636 388 LRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRP--NLLLLDEPTNHLDLDM 465 (638)
T ss_pred CCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCC--CEEEEcCCCCCCCHHH
Confidence 1222233333211000000000 111 112223333 5678 9999999999999999
Q ss_pred HHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCce-eccCCC
Q 017295 142 MERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDV-RLGDWK 187 (374)
Q Consensus 142 ~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv-~~~~~~ 187 (374)
.+.+.+.+... . ++ |+...+..+||++ .+|++|+++ ..++++
T Consensus 466 ~~~l~~~L~~~--~-gtvi~vSHd~~~~~~~~d~i-~~l~~G~i~~~~g~~~ 513 (638)
T PRK10636 466 RQALTEALIDF--E-GALVVVSHDRHLLRSTTDDL-YLVHDGKVEPFDGDLE 513 (638)
T ss_pred HHHHHHHHHHc--C-CeEEEEeCCHHHHHHhCCEE-EEEECCEEEEcCCCHH
Confidence 99999988775 2 34 9999999999999 889999986 445443
No 354
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.41 E-value=6.2e-14 Score=143.07 Aligned_cols=155 Identities=17% Similarity=0.135 Sum_probs=103.7
Q ss_pred ccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCC-ceeEEEeCCcchhh------h--hhhcc
Q 017295 15 RPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP-NEARVNIPDERFEW------L--CQLFK 81 (374)
Q Consensus 15 ~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p-~~G~i~~~g~~~~~------l--~~~~~ 81 (374)
+.+|+++++. ..+||+|+||||||||+++|+|. ..| ++|.|.++|.++.. . ...|.
T Consensus 273 ~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~-----------~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v 341 (490)
T PRK10938 273 RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGD-----------HPQGYSNDLTLFGRRRGSGETIWDIKKHIGYV 341 (490)
T ss_pred eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCC-----------CCcccCCeEEEecccCCCCCCHHHHHhhceEE
Confidence 4588888764 56999999999999999999998 544 68999998865421 1 11355
Q ss_pred CCCC-ccc--cchHhhHhhhh--c--cccCCC------C--------C----CCCCceeEecC------------CCCCc
Q 017295 82 PKSA-VPA--FLEIHDIAGLV--R--GAHEGQ------G--------A----FEDPDIIHVDD------------SVDPV 124 (374)
Q Consensus 82 ~~~~-~~~--~~~v~D~~gl~--~--~~~~~~------~--------~----~~~~~il~l~~------------~~dP~ 124 (374)
+|.. ... ..++.++.... . ...... . . ..+..+-.+++ +.+|
T Consensus 342 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p- 420 (490)
T PRK10938 342 SSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHP- 420 (490)
T ss_pred CHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCC-
Confidence 5542 111 12334332211 0 000000 0 1 11122223332 5689
Q ss_pred hhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccC-c-----cchHHHHH-HHHHHHHHHhCCCceec
Q 017295 125 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSN-D-----KQLKIEHE-LCQRVKAWLQDGKDVRL 183 (374)
Q Consensus 125 ~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~-~-----H~~~~~~~-~~d~v~~~L~~G~iv~~ 183 (374)
+++++|||++++|+......++.+.++.++++ + |+...+.. +||++ .+|++|+++..
T Consensus 421 -~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v-~~l~~G~i~~~ 484 (490)
T PRK10938 421 -TLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRL-EFVPDGDIYRY 484 (490)
T ss_pred -CEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeE-EEecCCceEEe
Confidence 99999999999999999999999998876543 2 99999887 58999 89999998754
No 355
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.41 E-value=1e-13 Score=132.79 Aligned_cols=159 Identities=20% Similarity=0.280 Sum_probs=115.0
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhh-----------
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ----------- 78 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~----------- 78 (374)
...++++++. |..+||||.+|||||||=.+|.++ +.+. |.|.+.|+++..+..
T Consensus 299 ~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL-----------~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQ 366 (534)
T COG4172 299 HLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRL-----------IPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQ 366 (534)
T ss_pred heEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhh-----------cCcC-ceEEECCccccccChhhhhhhhhhce
Confidence 3457777775 455999999999999999999998 5554 999999998865432
Q ss_pred -hc-cCCCCccccchHhhHhhhhccccCC-----CC---------------CCCCCceeEecC------------CCCCc
Q 017295 79 -LF-KPKSAVPAFLEIHDIAGLVRGAHEG-----QG---------------AFEDPDIIHVDD------------SVDPV 124 (374)
Q Consensus 79 -~~-~~~~~~~~~~~v~D~~gl~~~~~~~-----~~---------------~~~~~~il~l~~------------~~dP~ 124 (374)
.| .|-..+.+.+++-++++-+...+.. +. ...+...-.+++ ..+|
T Consensus 367 vVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP- 445 (534)
T COG4172 367 VVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKP- 445 (534)
T ss_pred EEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCC-
Confidence 12 2333466677887776543222221 00 000111111222 4578
Q ss_pred hhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc------cchHHHHHHHHHHHHHHhCCCceeccCCC
Q 017295 125 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSND------KQLKIEHELCQRVKAWLQDGKDVRLGDWK 187 (374)
Q Consensus 125 ~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~------H~~~~~~~~~d~v~~~L~~G~iv~~~~~~ 187 (374)
.+.++|||++.+|.....++.+.++.+.++.+- ||+..+..+|++| .+|++|+++..|+.+
T Consensus 446 -~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~v-iVm~~GkiVE~G~~~ 512 (534)
T COG4172 446 -ELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRV-IVMRDGKIVEQGPTE 512 (534)
T ss_pred -cEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceE-EEEeCCEEeeeCCHH
Confidence 999999999999999999999999988765442 9999999999999 999999999888643
No 356
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.41 E-value=9.3e-14 Score=156.56 Aligned_cols=165 Identities=16% Similarity=0.120 Sum_probs=119.3
Q ss_pred ccccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh------hhccC
Q 017295 13 AERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC------QLFKP 82 (374)
Q Consensus 13 ~~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~------~~~~~ 82 (374)
..+.+|++++. |..++|+|+||||||||+|+|+|... ++ ..|++|.|.++|.++.... ..|.+
T Consensus 72 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~-----~~--~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~ 144 (1394)
T TIGR00956 72 KTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTD-----GF--HIGVEGVITYDGITPEEIKKHYRGDVVYNA 144 (1394)
T ss_pred CcceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCC-----CC--CCCceeEEEECCEehHHHHhhcCceeEEec
Confidence 45789999985 55699999999999999999999821 00 2478999999998764321 24677
Q ss_pred CCC-ccccchHhhHhhhhccccC------CCC----------------CCC---C-----CceeEecC------------
Q 017295 83 KSA-VPAFLEIHDIAGLVRGAHE------GQG----------------AFE---D-----PDIIHVDD------------ 119 (374)
Q Consensus 83 ~~~-~~~~~~v~D~~gl~~~~~~------~~~----------------~~~---~-----~~il~l~~------------ 119 (374)
|.. ..+.+++.|++.+...... +.. .+. + +.+-.+++
T Consensus 145 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL 224 (1394)
T TIGR00956 145 ETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEAS 224 (1394)
T ss_pred cccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHH
Confidence 764 5667888888876422110 000 010 0 01112333
Q ss_pred CCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cch-HHHHHHHHHHHHHHhCCCceeccCCC
Q 017295 120 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQL-KIEHELCQRVKAWLQDGKDVRLGDWK 187 (374)
Q Consensus 120 ~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~-~~~~~~~d~v~~~L~~G~iv~~~~~~ 187 (374)
..+| +++++|||++++|........+.+++++++ +.+ |+. ..+..++|++ .+|.+|+++..|+.+
T Consensus 225 ~~~p--~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v-~~L~~G~iv~~G~~~ 296 (1394)
T TIGR00956 225 LGGA--KIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKV-IVLYEGYQIYFGPAD 296 (1394)
T ss_pred HhCC--CEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceE-EEEeCCeEEEECCHH
Confidence 4688 999999999999999999999999988764 444 875 7888999999 999999998877643
No 357
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.40 E-value=1e-13 Score=150.21 Aligned_cols=157 Identities=15% Similarity=0.154 Sum_probs=116.3
Q ss_pred ccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhh------hh--hhccCCC
Q 017295 17 ILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW------LC--QLFKPKS 84 (374)
Q Consensus 17 vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~------l~--~~~~~~~ 84 (374)
++++++. ++..|+.|+|||||||+|++|||. ..|++|.+.+.|.++.. .. -+|-||.
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~-----------~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~ 648 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGE-----------TKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQF 648 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHhCC-----------ccCCcceEEEecCccccccchhhhhhhcccCCch
Confidence 5666654 556999999999999999999999 78999999999887643 11 2578887
Q ss_pred C-ccccchHhhHhhhhccccCCCC-----------------CCCCCce------------eEecCCCCCchhHHHHHHHH
Q 017295 85 A-VPAFLEIHDIAGLVRGAHEGQG-----------------AFEDPDI------------IHVDDSVDPVRDLEVISAEL 134 (374)
Q Consensus 85 ~-~~~~~~v~D~~gl~~~~~~~~~-----------------~~~~~~i------------l~l~~~~dP~~~l~ilde~l 134 (374)
. +...++..++..+.....+-.. ...+..+ +.+....+| .+.++|||+
T Consensus 649 d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p--~vi~LDEPs 726 (885)
T KOG0059|consen 649 DALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDP--SVILLDEPS 726 (885)
T ss_pred hhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCC--CEEEecCCC
Confidence 5 6667777777665432221000 0001111 111114578 999999999
Q ss_pred HhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCCC
Q 017295 135 RLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 187 (374)
Q Consensus 135 ~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~~ 187 (374)
.+.|+..+...|..+....+.++. |.+++++.+|+|+ .+|.+|++...|...
T Consensus 727 tGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~-aImv~G~l~ciGs~q 783 (885)
T KOG0059|consen 727 TGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRT-AIMVIGQLRCIGSPQ 783 (885)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhh-heeecCeeEEecChH
Confidence 999999999999999988765522 9999999999999 999999998887653
No 358
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.40 E-value=4.5e-14 Score=148.34 Aligned_cols=153 Identities=14% Similarity=0.213 Sum_probs=105.8
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCC--Ccc
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS--AVP 87 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~--~~~ 87 (374)
++.+|+++++ |..+||+|+||||||||+++|+|. ..|++|.|.+ |.++ ...|.+|. .++
T Consensus 331 ~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~-----------~~p~~G~i~~-~~~~---~i~y~~q~~~~l~ 395 (635)
T PRK11147 331 GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQ-----------LQADSGRIHC-GTKL---EVAYFDQHRAELD 395 (635)
T ss_pred CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCCcEEEE-CCCc---EEEEEeCcccccC
Confidence 3468888775 455999999999999999999999 7899999998 4432 22355554 245
Q ss_pred ccchHhhHhhhhcc-cc-CCCC----------CCC----CCceeEecC------------CCCCchhHHHHHHHHHhhcH
Q 017295 88 AFLEIHDIAGLVRG-AH-EGQG----------AFE----DPDIIHVDD------------SVDPVRDLEVISAELRLKDI 139 (374)
Q Consensus 88 ~~~~v~D~~gl~~~-~~-~~~~----------~~~----~~~il~l~~------------~~dP~~~l~ilde~l~~~D~ 139 (374)
+.+++.+++.+... .. .+.. .+. +..+-.+++ ..+| +++++|||++++|+
T Consensus 396 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p--~lLlLDEPt~~LD~ 473 (635)
T PRK11147 396 PEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPS--NLLILDEPTNDLDV 473 (635)
T ss_pred CCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCC--CEEEEcCCCCCCCH
Confidence 55677777654321 00 0000 111 112223333 5688 99999999999999
Q ss_pred HHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHh-CCCceec-cCCC
Q 017295 140 EFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQ-DGKDVRL-GDWK 187 (374)
Q Consensus 140 ~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~-~G~iv~~-~~~~ 187 (374)
...+.+.+.+... +++ |+...+..+|+++ .+|+ +|++... |+++
T Consensus 474 ~~~~~l~~~l~~~---~~tvi~vSHd~~~~~~~~d~i-~~l~~~g~i~~~~g~y~ 524 (635)
T PRK11147 474 ETLELLEELLDSY---QGTVLLVSHDRQFVDNTVTEC-WIFEGNGKIGRYVGGYH 524 (635)
T ss_pred HHHHHHHHHHHhC---CCeEEEEECCHHHHHHhcCEE-EEEeCCCeEEEccCCHH
Confidence 9988877777653 233 9999999999999 8887 7988653 4444
No 359
>PRK11058 GTPase HflX; Provisional
Probab=99.40 E-value=7e-13 Score=132.35 Aligned_cols=60 Identities=33% Similarity=0.570 Sum_probs=51.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhc
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~ 100 (374)
..|+|+|.||||||||||+|+|....++++||+|++|..+.+.+++.. .+.+.|++|+.+
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~----------------~~~l~DTaG~~r 257 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVG----------------ETVLADTVGFIR 257 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCC----------------eEEEEecCcccc
Confidence 469999999999999999999998888999999999999999887631 256789998853
No 360
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.40 E-value=4.6e-13 Score=139.47 Aligned_cols=163 Identities=15% Similarity=0.133 Sum_probs=123.4
Q ss_pred ccccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCccc-CCceeEEEeCCcchhh--hh--hhccCC
Q 017295 13 AERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTI-EPNEARVNIPDERFEW--LC--QLFKPK 83 (374)
Q Consensus 13 ~~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~-~p~~G~i~~~g~~~~~--l~--~~~~~~ 83 (374)
..+.+|++++. |...||+||+|||||||+|+|+|... . -..+|.|.++|++... .. -.|+.|
T Consensus 41 ~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~---------~~~~~~G~ilvNG~~~~~~~~~~~s~yV~Q 111 (613)
T KOG0061|consen 41 KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLN---------GGLKLSGEILLNGRPRDSRSFRKISGYVQQ 111 (613)
T ss_pred ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhcccc---------CCCcceEEEEECCccCchhhhhheeEEEcc
Confidence 35789999875 55699999999999999999999932 1 2478999999954322 22 258888
Q ss_pred CC-ccccchHhhHhhhhccccCCCC-----------------CCC--CCceeE------ecC------------CCCCch
Q 017295 84 SA-VPAFLEIHDIAGLVRGAHEGQG-----------------AFE--DPDIIH------VDD------------SVDPVR 125 (374)
Q Consensus 84 ~~-~~~~~~v~D~~gl~~~~~~~~~-----------------~~~--~~~il~------l~~------------~~dP~~ 125 (374)
+. +.+.++|.++.-+......... .+. .+.++. +++ ..||
T Consensus 112 dD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P-- 189 (613)
T KOG0061|consen 112 DDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDP-- 189 (613)
T ss_pred cccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCC--
Confidence 76 6788999999887544332221 111 122221 232 5799
Q ss_pred hHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cc-hHHHHHHHHHHHHHHhCCCceeccCCC
Q 017295 126 DLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQ-LKIEHELCQRVKAWLQDGKDVRLGDWK 187 (374)
Q Consensus 126 ~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~-~~~~~~~~d~v~~~L~~G~iv~~~~~~ 187 (374)
.++++|||+.++|.....+..+.+++++++|++ |. ...+..+.|++ .+|.+|+++..|+..
T Consensus 190 ~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l-~lLs~G~~vy~G~~~ 256 (613)
T KOG0061|consen 190 SILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKL-LLLSEGEVVYSGSPR 256 (613)
T ss_pred CEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHh-hhhcCCcEEEecCHH
Confidence 999999999999999999999999999988775 75 45677889999 999999999988764
No 361
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.40 E-value=5.9e-14 Score=145.26 Aligned_cols=147 Identities=12% Similarity=0.138 Sum_probs=103.4
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCC--ccc
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSA--VPA 88 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~--~~~ 88 (374)
+.+|+++++ |..+||+|+||||||||+++|+|. ..|++|.|.+++ ++ ...|.+|.. ++.
T Consensus 335 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~-----------~~p~~G~i~~~~-~~---~i~~v~q~~~~~~~ 399 (552)
T TIGR03719 335 KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQ-----------EQPDSGTIKIGE-TV---KLAYVDQSRDALDP 399 (552)
T ss_pred eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCC-----------CCCCCeEEEECC-ce---EEEEEeCCccccCC
Confidence 468888776 456999999999999999999999 789999999844 21 234555542 445
Q ss_pred cchHhhHhhhhccc---cCCCC---------CCC----CCceeEecC------------CCCCchhHHHHHHHHHhhcHH
Q 017295 89 FLEIHDIAGLVRGA---HEGQG---------AFE----DPDIIHVDD------------SVDPVRDLEVISAELRLKDIE 140 (374)
Q Consensus 89 ~~~v~D~~gl~~~~---~~~~~---------~~~----~~~il~l~~------------~~dP~~~l~ilde~l~~~D~~ 140 (374)
.+++.+++.+.... ..... .+. +..+-.+++ +.+| +++++|||++++|+.
T Consensus 400 ~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p--~lllLDEPt~~LD~~ 477 (552)
T TIGR03719 400 NKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGG--NVLLLDEPTNDLDVE 477 (552)
T ss_pred CCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHH
Confidence 56777776553211 00000 111 112223333 5789 999999999999999
Q ss_pred HHHHHHHHHHHHHHccC----ccchHHHHHHHHHHHHHHhC-CCce
Q 017295 141 FMERRIEDVEKSMKRSN----DKQLKIEHELCQRVKAWLQD-GKDV 181 (374)
Q Consensus 141 ~~~~~~~~i~~~~~~~~----~H~~~~~~~~~d~v~~~L~~-G~iv 181 (374)
....+++.+.+.. +. +|++..+..+||++ .+|++ |++.
T Consensus 478 ~~~~l~~~l~~~~--~~viivsHd~~~~~~~~d~i-~~l~~~~~~~ 520 (552)
T TIGR03719 478 TLRALEEALLEFA--GCAVVISHDRWFLDRIATHI-LAFEGDSHVE 520 (552)
T ss_pred HHHHHHHHHHHCC--CeEEEEeCCHHHHHHhCCEE-EEEECCCeEE
Confidence 9999998888752 22 29999999999999 78876 4655
No 362
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=9.6e-14 Score=124.32 Aligned_cols=160 Identities=19% Similarity=0.179 Sum_probs=105.3
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhh-------hc-cC
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LF-KP 82 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~-------~~-~~ 82 (374)
+.+|++++. |+..+|+||||||||||.++|+|... ++++.|.|.++|+++..++. ++ ..
T Consensus 17 keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~---------Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLaf 87 (251)
T COG0396 17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK---------YEVTEGEILFDGEDILELSPDERARAGIFLAF 87 (251)
T ss_pred hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCC---------ceEecceEEECCcccccCCHhHHHhcCCEEee
Confidence 589999986 45599999999999999999999854 77899999999999865443 11 12
Q ss_pred CCC-ccccchHhhHhhhhccccCCCC---------------------CCCCCce-eEecC------------CCCCchhH
Q 017295 83 KSA-VPAFLEIHDIAGLVRGAHEGQG---------------------AFEDPDI-IHVDD------------SVDPVRDL 127 (374)
Q Consensus 83 ~~~-~~~~~~v~D~~gl~~~~~~~~~---------------------~~~~~~i-l~l~~------------~~dP~~~l 127 (374)
|.+ -.+-+++.|.+....++..+.. .|.+..+ .-+++ +.+| ++
T Consensus 88 Q~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~leP--kl 165 (251)
T COG0396 88 QYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEP--KL 165 (251)
T ss_pred cCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCC--CE
Confidence 221 1122344444333222211100 0000000 00111 5679 99
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHH-HHHHHHHHhCCCceeccCC
Q 017295 128 EVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHEL-CQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 128 ~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~-~d~v~~~L~~G~iv~~~~~ 186 (374)
.++|||=+++|+..++-.-+.+..+.+.+.+ |.......+ .|+| .+|-+|+++..|+.
T Consensus 166 ~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~v-hvl~~GrIv~sG~~ 229 (251)
T COG0396 166 AILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKV-HVLYDGRIVKSGDP 229 (251)
T ss_pred EEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEE-EEEECCEEEecCCH
Confidence 9999999999999999888888888766543 755433332 2777 78889999988765
No 363
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.39 E-value=5.6e-14 Score=145.52 Aligned_cols=148 Identities=14% Similarity=0.160 Sum_probs=103.9
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCC--cc
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSA--VP 87 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~--~~ 87 (374)
++.+|+++++ |..+||+|+||||||||+++|+|. +.|++|.|.+++ ++ ...|.+|.. ++
T Consensus 336 ~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~-----------~~p~~G~i~~~~-~~---~i~~v~q~~~~~~ 400 (556)
T PRK11819 336 DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQ-----------EQPDSGTIKIGE-TV---KLAYVDQSRDALD 400 (556)
T ss_pred CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeEEEECC-ce---EEEEEeCchhhcC
Confidence 3468888876 456999999999999999999999 889999999843 21 234566652 45
Q ss_pred ccchHhhHhhhhccccC-CC-C----------CCC----CCceeEecC------------CCCCchhHHHHHHHHHhhcH
Q 017295 88 AFLEIHDIAGLVRGAHE-GQ-G----------AFE----DPDIIHVDD------------SVDPVRDLEVISAELRLKDI 139 (374)
Q Consensus 88 ~~~~v~D~~gl~~~~~~-~~-~----------~~~----~~~il~l~~------------~~dP~~~l~ilde~l~~~D~ 139 (374)
..+++.+++.+...... .. . .+. +..+-.+++ +.+| +++++|||++++|+
T Consensus 401 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p--~lllLDEPt~~LD~ 478 (556)
T PRK11819 401 PNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGG--NVLLLDEPTNDLDV 478 (556)
T ss_pred CCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCC--CEEEEcCCCCCCCH
Confidence 55677777655321100 00 0 111 122223333 5689 99999999999999
Q ss_pred HHHHHHHHHHHHHHHccC----ccchHHHHHHHHHHHHHHhC-CCce
Q 017295 140 EFMERRIEDVEKSMKRSN----DKQLKIEHELCQRVKAWLQD-GKDV 181 (374)
Q Consensus 140 ~~~~~~~~~i~~~~~~~~----~H~~~~~~~~~d~v~~~L~~-G~iv 181 (374)
.....+++.+.... +. +|++..+..+||++ .+|++ |++.
T Consensus 479 ~~~~~l~~~l~~~~--~tvi~vtHd~~~~~~~~d~i-~~l~~~g~~~ 522 (556)
T PRK11819 479 ETLRALEEALLEFP--GCAVVISHDRWFLDRIATHI-LAFEGDSQVE 522 (556)
T ss_pred HHHHHHHHHHHhCC--CeEEEEECCHHHHHHhCCEE-EEEECCCeEE
Confidence 99999998887652 22 29999999999999 77875 5554
No 364
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.39 E-value=1.2e-12 Score=132.81 Aligned_cols=60 Identities=30% Similarity=0.491 Sum_probs=52.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhc
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~~-~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~ 100 (374)
..+|+|+|+||||||||+|.|+|... .++++|+||.++....+.++|.. +.++|++|+.+
T Consensus 211 ~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~-----------------~~l~DTaG~~~ 271 (472)
T PRK03003 211 PRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT-----------------WRFVDTAGLRR 271 (472)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE-----------------EEEEECCCccc
Confidence 36799999999999999999999875 46999999999999988887754 57899999854
No 365
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.39 E-value=1.1e-13 Score=119.83 Aligned_cols=128 Identities=22% Similarity=0.269 Sum_probs=87.6
Q ss_pred cccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-------hhccCCC
Q 017295 16 PILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKS 84 (374)
Q Consensus 16 ~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-------~~~~~~~ 84 (374)
.+|+++++. ..++|+|+||||||||+++|+|. ++|+.|.|+++|..+.... ..|.+|
T Consensus 13 ~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~-----------~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q- 80 (157)
T cd00267 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGL-----------LKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ- 80 (157)
T ss_pred eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCccEEEECCEEcccCCHHHHHhceEEEee-
Confidence 577777654 56999999999999999999999 7899999999987643210 012221
Q ss_pred CccccchHhhHhhhhccccCCCCCCCCCceeEecCCCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----c
Q 017295 85 AVPAFLEIHDIAGLVRGAHEGQGAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----K 159 (374)
Q Consensus 85 ~~~~~~~v~D~~gl~~~~~~~~~~~~~~~il~l~~~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H 159 (374)
.+.|+. ....+...-+.+| ++.++|||+.++|........+.+.+....+.+ |
T Consensus 81 -----------------lS~G~~---~r~~l~~~l~~~~--~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh 138 (157)
T cd00267 81 -----------------LSGGQR---QRVALARALLLNP--DLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTH 138 (157)
T ss_pred -----------------CCHHHH---HHHHHHHHHhcCC--CEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 222211 0000000002357 889999999999999999988888876654333 9
Q ss_pred chHHHHHHHHHHHHHHhCC
Q 017295 160 QLKIEHELCQRVKAWLQDG 178 (374)
Q Consensus 160 ~~~~~~~~~d~v~~~L~~G 178 (374)
+...+..+||++ .+|.+|
T Consensus 139 ~~~~~~~~~d~i-~~l~~g 156 (157)
T cd00267 139 DPELAELAADRV-IVLKDG 156 (157)
T ss_pred CHHHHHHhCCEE-EEEeCc
Confidence 998888888877 555443
No 366
>PLN03232 ABC transporter C family member; Provisional
Probab=99.38 E-value=5.3e-14 Score=159.81 Aligned_cols=156 Identities=17% Similarity=0.192 Sum_probs=113.4
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhh-------hccCC
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPK 83 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~-------~~~~~ 83 (374)
++||+++++ |.+|||||++|||||||+++|.|. .+|++|.|.++|.++..+.. .+.||
T Consensus 1249 ~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl-----------~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQ 1317 (1495)
T PLN03232 1249 PPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRI-----------VELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQ 1317 (1495)
T ss_pred CcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CcCCCceEEECCEEhhhCCHHHHHhhcEEECC
Confidence 568998875 566999999999999999999999 89999999999998765432 57889
Q ss_pred CCccccchHhhHhhhhccccCCCC--------------CCCC--Ccee-----EecC------------CCCCchhHHHH
Q 017295 84 SAVPAFLEIHDIAGLVRGAHEGQG--------------AFED--PDII-----HVDD------------SVDPVRDLEVI 130 (374)
Q Consensus 84 ~~~~~~~~v~D~~gl~~~~~~~~~--------------~~~~--~~il-----~l~~------------~~dP~~~l~il 130 (374)
+.....-++.|++.....++..+- .+.+ +..+ .+++ ..+| +++++
T Consensus 1318 dp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~--~ILIL 1395 (1495)
T PLN03232 1318 SPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRS--KILVL 1395 (1495)
T ss_pred CCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCC--CEEEE
Confidence 874444578887765432111000 0000 0000 1111 4578 99999
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 131 SAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 131 de~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
||+++.+|.++-..+.+.+++.. +++| |.++.+.. ||+| .+|++|+++..|+.
T Consensus 1396 DEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~ti~~-~DrI-lVL~~G~ivE~Gt~ 1453 (1495)
T PLN03232 1396 DEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLNTIID-CDKI-LVLSSGQVLEYDSP 1453 (1495)
T ss_pred ECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHh-CCEE-EEEECCEEEEECCH
Confidence 99999999998887777777654 4455 99977665 9999 99999999987754
No 367
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.38 E-value=2.6e-13 Score=117.48 Aligned_cols=157 Identities=17% Similarity=0.254 Sum_probs=101.4
Q ss_pred cccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhh-----hhh----hcc-
Q 017295 16 PILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LCQ----LFK- 81 (374)
Q Consensus 16 ~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~-----l~~----~~~- 81 (374)
.+++.+++ +..+|+||.||||||||.++|+|. ++|++|+|.++|+.+.. .++ +|+
T Consensus 27 ~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGm-----------i~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQD 95 (267)
T COG4167 27 EAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGM-----------IEPTSGEILINDHPLHFGDYSFRSKRIRMIFQD 95 (267)
T ss_pred hcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcc-----------cCCCCceEEECCccccccchHhhhhheeeeecC
Confidence 44555554 556999999999999999999999 99999999999987632 111 222
Q ss_pred CCCCccccc-----------------------hHhhHhhh---hccccCCCC-----CCCCCceeEecCCCCCchhHHHH
Q 017295 82 PKSAVPAFL-----------------------EIHDIAGL---VRGAHEGQG-----AFEDPDIIHVDDSVDPVRDLEVI 130 (374)
Q Consensus 82 ~~~~~~~~~-----------------------~v~D~~gl---~~~~~~~~~-----~~~~~~il~l~~~~dP~~~l~il 130 (374)
|...+.+.+ .+.+++.+ .+....-.. .-+....+.-.-..+| .+.+.
T Consensus 96 pnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P--~iIIa 173 (267)
T COG4167 96 PNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRP--KIIIA 173 (267)
T ss_pred CccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCC--cEEEe
Confidence 111122222 12222222 111000000 0000000000014578 99999
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHccCc------cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 131 SAELRLKDIEFMERRIEDVEKSMKRSND------KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 131 de~l~~~D~~~~~~~~~~i~~~~~~~~~------H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
||.+..+|.....+..+.+..+.++.+. .++..+..++|.| .+|++|+++..|..
T Consensus 174 DeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~v-iVM~EG~vvE~G~t 234 (267)
T COG4167 174 DEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQV-LVMHEGEVVERGST 234 (267)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccE-EEEecCceeecCCh
Confidence 9999999999999999988877766443 5677788889999 99999999987754
No 368
>PLN03140 ABC transporter G family member; Provisional
Probab=99.37 E-value=2.6e-13 Score=152.90 Aligned_cols=159 Identities=14% Similarity=0.175 Sum_probs=117.3
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCc---eeEEEeCCcchhhhh----hhccC
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN---EARVNIPDERFEWLC----QLFKP 82 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~---~G~i~~~g~~~~~l~----~~~~~ 82 (374)
.+.+|++++. |..++|+|||||||||||++|+|. ++|+ +|.|.++|.++.... ..|.+
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~-----------l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~ 245 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGK-----------LDPSLKVSGEITYNGYRLNEFVPRKTSAYIS 245 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCC-----------CCCCCcceeEEEECCEechhhcccceeEEec
Confidence 5779999975 455999999999999999999999 6777 999999998764321 25777
Q ss_pred CCC-ccccchHhhHhhhhccccC-C------------C-----------------------------C------CCC---
Q 017295 83 KSA-VPAFLEIHDIAGLVRGAHE-G------------Q-----------------------------G------AFE--- 110 (374)
Q Consensus 83 ~~~-~~~~~~v~D~~gl~~~~~~-~------------~-----------------------------~------~~~--- 110 (374)
|.. ..+.+++.|++.+...... + . . .+.
T Consensus 246 Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~ 325 (1470)
T PLN03140 246 QNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICK 325 (1470)
T ss_pred ccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCcccc
Confidence 764 5667888888876422110 0 0 0 000
Q ss_pred -----CCceeEecC------------CCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cch-HHHHH
Q 017295 111 -----DPDIIHVDD------------SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQL-KIEHE 166 (374)
Q Consensus 111 -----~~~il~l~~------------~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~-~~~~~ 166 (374)
+..+-.+++ ..+| +++++|||+.++|......+.+.+++.++. +.+ |+. .++..
T Consensus 326 ~t~vg~~~~rglSGGerkRVsia~aL~~~p--~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~ 403 (1470)
T PLN03140 326 DTIVGDEMIRGISGGQKKRVTTGEMIVGPT--KTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFD 403 (1470)
T ss_pred CceeCCccccCCCcccceeeeehhhhcCCC--cEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHH
Confidence 000111222 4578 999999999999999999999999988754 444 764 68889
Q ss_pred HHHHHHHHHhCCCceeccCC
Q 017295 167 LCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 167 ~~d~v~~~L~~G~iv~~~~~ 186 (374)
++|+| .+|.+|+++..|+.
T Consensus 404 lfD~v-ilL~~G~ivy~G~~ 422 (1470)
T PLN03140 404 LFDDI-ILLSEGQIVYQGPR 422 (1470)
T ss_pred HhheE-EEeeCceEEEeCCH
Confidence 99999 99999999987754
No 369
>PRK00089 era GTPase Era; Reviewed
Probab=99.36 E-value=8.3e-13 Score=125.90 Aligned_cols=58 Identities=34% Similarity=0.358 Sum_probs=48.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhh
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~-~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~ 99 (374)
..|+|+|+||||||||+|.|+|.+.. +++.|.||.....|.+..++. .+.++|+||+.
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~-----------------qi~~iDTPG~~ 64 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDA-----------------QIIFVDTPGIH 64 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCc-----------------eEEEEECCCCC
Confidence 35899999999999999999999875 489999999888877654432 27889999984
No 370
>PLN03130 ABC transporter C family member; Provisional
Probab=99.36 E-value=6.9e-14 Score=159.30 Aligned_cols=156 Identities=17% Similarity=0.195 Sum_probs=113.6
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhh-------hccCC
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPK 83 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~-------~~~~~ 83 (374)
++||+++++ |.+|||||++|||||||+++|.|. .+|++|.|.++|.++..+.. .+.||
T Consensus 1252 ~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl-----------~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQ 1320 (1622)
T PLN03130 1252 PPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRI-----------VELERGRILIDGCDISKFGLMDLRKVLGIIPQ 1320 (1622)
T ss_pred CceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCc-----------CCCCCceEEECCEecccCCHHHHHhccEEECC
Confidence 468998876 556999999999999999999999 89999999999998765432 57888
Q ss_pred CCccccchHhhHhhhhccccCCCC--------------CCCC--Ccee-----EecC------------CCCCchhHHHH
Q 017295 84 SAVPAFLEIHDIAGLVRGAHEGQG--------------AFED--PDII-----HVDD------------SVDPVRDLEVI 130 (374)
Q Consensus 84 ~~~~~~~~v~D~~gl~~~~~~~~~--------------~~~~--~~il-----~l~~------------~~dP~~~l~il 130 (374)
+.....-++.|++.....++..+- .+.. +..+ .+++ ..+| +++++
T Consensus 1321 dp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p--~ILIL 1398 (1622)
T PLN03130 1321 APVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRS--KILVL 1398 (1622)
T ss_pred CCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCC--CEEEE
Confidence 875445578887765322110000 0000 0000 0111 4578 99999
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 131 SAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 131 de~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
||+++.+|.++-..+.+.+++.. +++| |.+..+.. ||+| .+|++|+++..|+.
T Consensus 1399 DEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~tI~~-~DrI-lVLd~G~IvE~Gt~ 1456 (1622)
T PLN03130 1399 DEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRI-LVLDAGRVVEFDTP 1456 (1622)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChHHHHh-CCEE-EEEECCEEEEeCCH
Confidence 99999999999888888887654 4555 99987665 8999 99999999987754
No 371
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.36 E-value=1.2e-13 Score=145.01 Aligned_cols=153 Identities=16% Similarity=0.222 Sum_probs=97.3
Q ss_pred ccccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcc-hhhhhhh--------
Q 017295 13 AERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER-FEWLCQL-------- 79 (374)
Q Consensus 13 ~~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~-~~~l~~~-------- 79 (374)
+++.+|+++++ |..+||||+||||||||||+|+|. ..|++|.|.+++.. +.++.+.
T Consensus 12 g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~-----------~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~ 80 (638)
T PRK10636 12 GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNE-----------ISADGGSYTFPGNWQLAWVNQETPALPQPA 80 (638)
T ss_pred CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEecCCCEEEEEecCCCCCCCCH
Confidence 35678999886 456999999999999999999999 78999999987742 2211110
Q ss_pred --ccCCCC-ccccchHh-----------hHhhhhcc--ccCCCC------------CC----CCCceeEecC--------
Q 017295 80 --FKPKSA-VPAFLEIH-----------DIAGLVRG--AHEGQG------------AF----EDPDIIHVDD-------- 119 (374)
Q Consensus 80 --~~~~~~-~~~~~~v~-----------D~~gl~~~--~~~~~~------------~~----~~~~il~l~~-------- 119 (374)
+.++.. .+..++.. ....+... ...+.. .+ .+..+-.+++
T Consensus 81 ~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~L 160 (638)
T PRK10636 81 LEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNL 160 (638)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHH
Confidence 111000 00000000 00000000 000000 11 1222333443
Q ss_pred ----CCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCcee
Q 017295 120 ----SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVR 182 (374)
Q Consensus 120 ----~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~ 182 (374)
+.+| +++++|||++.+|+.....+.+.+.+. +++ |+...+..+|+++ .+|++|++..
T Consensus 161 A~aL~~~P--~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~~~l~~~~d~i-~~L~~G~i~~ 226 (638)
T PRK10636 161 AQALICRS--DLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDRDFLDPIVDKI-IHIEQQSLFE 226 (638)
T ss_pred HHHHccCC--CEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHHHHHHhcCEE-EEEeCCEEEE
Confidence 5689 999999999999999998877777653 233 9999999999999 8999999863
No 372
>PLN03140 ABC transporter G family member; Provisional
Probab=99.36 E-value=1.6e-13 Score=154.59 Aligned_cols=163 Identities=10% Similarity=0.089 Sum_probs=117.1
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh--h--hhccCCCC
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--C--QLFKPKSA 85 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l--~--~~~~~~~~ 85 (374)
.+.+|++++. |..++|+|+||||||||+|+|+|... .-+.+|.|.++|.+.... . ..|.+|..
T Consensus 892 ~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~---------~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d 962 (1470)
T PLN03140 892 RLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---------GGYIEGDIRISGFPKKQETFARISGYCEQND 962 (1470)
T ss_pred CceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCC---------CCcccceEEECCccCChHHhhhheEEEcccc
Confidence 4578999885 45599999999999999999999821 114689999999765321 1 25777764
Q ss_pred -ccccchHhhHhhhhccccC--CCC---------------CC---CCCce-----eEecC------------CCCCchhH
Q 017295 86 -VPAFLEIHDIAGLVRGAHE--GQG---------------AF---EDPDI-----IHVDD------------SVDPVRDL 127 (374)
Q Consensus 86 -~~~~~~v~D~~gl~~~~~~--~~~---------------~~---~~~~i-----l~l~~------------~~dP~~~l 127 (374)
..+.+++.|++.+...... ... .+ .+..+ -.+++ +.+| ++
T Consensus 963 ~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P--~l 1040 (1470)
T PLN03140 963 IHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANP--SI 1040 (1470)
T ss_pred ccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCC--CE
Confidence 5667889888876421110 000 11 11111 12332 5789 99
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchH-HHHHHHHHHHHHHhC-CCceeccCCCh
Q 017295 128 EVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLK-IEHELCQRVKAWLQD-GKDVRLGDWKA 188 (374)
Q Consensus 128 ~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~-~~~~~~d~v~~~L~~-G~iv~~~~~~~ 188 (374)
+++|||++++|......+++.++++++++.+ |+.. .+...+|++ .+|++ |+++..|+..+
T Consensus 1041 L~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~v-llL~~gG~~v~~G~~~~ 1107 (1470)
T PLN03140 1041 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL-LLMKRGGQVIYSGPLGR 1107 (1470)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEE-EEEcCCCEEEEECCccc
Confidence 9999999999999999999999988766655 9887 467889999 88886 89988887653
No 373
>PRK13409 putative ATPase RIL; Provisional
Probab=99.36 E-value=6.6e-14 Score=145.32 Aligned_cols=147 Identities=16% Similarity=0.146 Sum_probs=97.9
Q ss_pred ccccccc---CCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEE-----------eCCcchhhhhh---
Q 017295 16 PILGRFS---SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVN-----------IPDERFEWLCQ--- 78 (374)
Q Consensus 16 ~vL~~i~---~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~-----------~~g~~~~~l~~--- 78 (374)
.+|.+++ .|..+||+|+||||||||+++|+|. +.|+.|.|. ++|.++.....
T Consensus 88 ~~L~~l~~i~~Gev~gLvG~NGaGKSTLlkiL~G~-----------l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~ 156 (590)
T PRK13409 88 FKLYGLPIPKEGKVTGILGPNGIGKTTAVKILSGE-----------LIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLY 156 (590)
T ss_pred eeEecCCcCCCCCEEEEECCCCCCHHHHHHHHhCC-----------ccCCCccccCCCcHHHHHHHhCChHHHHHHHHHh
Confidence 4666665 5667999999999999999999999 889999997 77876543211
Q ss_pred ------hccCCCC-ccc---cchHhhHhhhhcc------cc--CCCCCCCCCceeEecC------------CCCCchhHH
Q 017295 79 ------LFKPKSA-VPA---FLEIHDIAGLVRG------AH--EGQGAFEDPDIIHVDD------------SVDPVRDLE 128 (374)
Q Consensus 79 ------~~~~~~~-~~~---~~~v~D~~gl~~~------~~--~~~~~~~~~~il~l~~------------~~dP~~~l~ 128 (374)
.+.+|.. ..+ ..++.|+...... .- .+.....+..+-.+++ +.+| +++
T Consensus 157 ~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p--~ll 234 (590)
T PRK13409 157 NGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDA--DFY 234 (590)
T ss_pred ccCcceeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCC--CEE
Confidence 2223321 111 1144443321100 00 0000111222223332 5688 999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhC
Q 017295 129 VISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQD 177 (374)
Q Consensus 129 ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~ 177 (374)
++|||++.+|+.......+.+.++.+ +.+ |++..+..++|++ .+|.+
T Consensus 235 lLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~~l~~~~D~v-~vl~~ 286 (590)
T PRK13409 235 FFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLAVLDYLADNV-HIAYG 286 (590)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEE-EEEeC
Confidence 99999999999999999999988875 554 9999999999999 77765
No 374
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.35 E-value=8.1e-12 Score=108.42 Aligned_cols=57 Identities=33% Similarity=0.485 Sum_probs=49.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhh
Q 017295 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~ 99 (374)
+|+++|.+|||||||+|.|++....++++||+|..+..+.+.+.+.. ++++|++|+.
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~-----------------~~i~Dt~G~~ 58 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLR-----------------WQVIDTPGLL 58 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceE-----------------EEEEECCCcC
Confidence 58999999999999999999998877889999999988887765433 7889999874
No 375
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=2.5e-13 Score=138.75 Aligned_cols=157 Identities=16% Similarity=0.212 Sum_probs=114.7
Q ss_pred ccccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhh-------hcc
Q 017295 13 AERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFK 81 (374)
Q Consensus 13 ~~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~-------~~~ 81 (374)
++.+||+++++. ..||||||+|+||||+.++|.+. ++|++|.|.++|.++..+.. .++
T Consensus 479 p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rf-----------Y~PtsG~IllDG~~i~~~~~~~lr~~Ig~V 547 (716)
T KOG0058|consen 479 PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRF-----------YDPTSGRILLDGVPISDINHKYLRRKIGLV 547 (716)
T ss_pred CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHh-----------cCCCCCeEEECCeehhhcCHHHHHHHeeee
Confidence 356799999864 56999999999999999999999 99999999999999876543 467
Q ss_pred CCCCccccchHhhHhhhhccccCCCC---------------CCCCC-------ceeEecC------------CCCCchhH
Q 017295 82 PKSAVPAFLEIHDIAGLVRGAHEGQG---------------AFEDP-------DIIHVDD------------SVDPVRDL 127 (374)
Q Consensus 82 ~~~~~~~~~~v~D~~gl~~~~~~~~~---------------~~~~~-------~il~l~~------------~~dP~~~l 127 (374)
.|+++...-++.|++.++......+. .|.+. .=..+++ ..|| .+
T Consensus 548 ~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P--~V 625 (716)
T KOG0058|consen 548 GQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNP--RV 625 (716)
T ss_pred eccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCC--CE
Confidence 78886666788898887543111000 11110 0011222 4689 99
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 128 EVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 128 ~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+++||.++.+|.+.-....+.+.+.. ++.| |.+.-+. -+|+| .++++|+++..|.
T Consensus 626 LILDEATSALDaeSE~lVq~aL~~~~-~~rTVlvIAHRLSTV~-~Ad~I-vvi~~G~V~E~G~ 685 (716)
T KOG0058|consen 626 LILDEATSALDAESEYLVQEALDRLM-QGRTVLVIAHRLSTVR-HADQI-VVIDKGRVVEMGT 685 (716)
T ss_pred EEEechhhhcchhhHHHHHHHHHHhh-cCCeEEEEehhhhHhh-hccEE-EEEcCCeEEeccc
Confidence 99999999999998777667776655 3344 8776644 47888 8899999987764
No 376
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.35 E-value=1.7e-12 Score=137.86 Aligned_cols=58 Identities=36% Similarity=0.587 Sum_probs=52.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhh
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~ 99 (374)
.+|+|+|.||||||||||.|+|.+..++|+|++|.++..|.+..++.+ ++++|+||..
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~-----------------i~lvDtPG~y 61 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQ-----------------VTLVDLPGTY 61 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceE-----------------EEEEECCCcc
Confidence 579999999999999999999999889999999999999998776644 7899999985
No 377
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.34 E-value=9.8e-12 Score=126.68 Aligned_cols=184 Identities=19% Similarity=0.216 Sum_probs=107.4
Q ss_pred ccccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCC-cchhhhhhhccCCCC-c
Q 017295 13 AERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD-ERFEWLCQLFKPKSA-V 86 (374)
Q Consensus 13 ~~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g-~~~~~l~~~~~~~~~-~ 86 (374)
+.+.+|++++. |.+|||||+|||||||||++|+|. ..|++|.|.... .++ .|.+|.. .
T Consensus 14 g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~-----------~~~~~G~i~~~~~~~v-----~~l~Q~~~~ 77 (530)
T COG0488 14 GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGE-----------LEPDSGEVTRPKGLRV-----GYLSQEPPL 77 (530)
T ss_pred CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCC-----------CcCCCCeEeecCCceE-----EEeCCCCCc
Confidence 57788888876 566999999999999999999999 889999998864 233 3555554 3
Q ss_pred cccchHhhHhhhhccccCCCCCCCCCceeEecCCCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCccchHHHHH
Q 017295 87 PAFLEIHDIAGLVRGAHEGQGAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHE 166 (374)
Q Consensus 87 ~~~~~v~D~~gl~~~~~~~~~~~~~~~il~l~~~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~H~~~~~~~ 166 (374)
....++.|.+-....... .-.+++..+...+...+ ......+......-... ...
T Consensus 78 ~~~~tv~~~v~~~~~~~~-----------------~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~---~~e- 132 (530)
T COG0488 78 DPEKTVLDYVIEGFGELR-----------------ELLAELEEAYALLADPD----DELLAELEALLEELDGW---TLE- 132 (530)
T ss_pred CCCccHHHHHHhhhHHHH-----------------HHHHHHHHHHHhcccch----hHHHHHHHHHHHhhccc---chH-
Confidence 444567766544211000 00000001100000001 11111111111000000 011
Q ss_pred HHHHHHHHHhCCCce----eccCCChhHHHHHHhccccccCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEe
Q 017295 167 LCQRVKAWLQDGKDV----RLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPF 242 (374)
Q Consensus 167 ~~d~v~~~L~~G~iv----~~~~~~~~~~~~l~~~~~~~~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~v 242 (374)
.++..+|..=.+. ..++++..+...+.....+..+|-|+++..+-+++ +-+.++|+++++..+++ .+|.|
T Consensus 133 --~~~~~~L~gLg~~~~~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHL---D~~~i~WLe~~L~~~~g-tviiV 206 (530)
T COG0488 133 --ARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHL---DLESIEWLEDYLKRYPG-TVIVV 206 (530)
T ss_pred --HHHHHHHhcCCCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccc---CHHHHHHHHHHHHhCCC-cEEEE
Confidence 2222333321111 22567778887777778888999999999885433 24689999999988877 79999
Q ss_pred e
Q 017295 243 S 243 (374)
Q Consensus 243 S 243 (374)
|
T Consensus 207 S 207 (530)
T COG0488 207 S 207 (530)
T ss_pred e
Confidence 9
No 378
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.34 E-value=6.2e-12 Score=113.29 Aligned_cols=62 Identities=39% Similarity=0.634 Sum_probs=51.7
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhh
Q 017295 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (374)
Q Consensus 22 ~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~ 99 (374)
+.-.+|+|+|++|||||||+|.|++....+.++|++|.+|..+.+.+++.. .+.++|++|+.
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~----------------~~~i~Dt~G~~ 100 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGR----------------EVLLTDTVGFI 100 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCc----------------eEEEeCCCccc
Confidence 334679999999999999999999987777899999999998888776531 26788999874
No 379
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.33 E-value=3.5e-13 Score=138.80 Aligned_cols=124 Identities=21% Similarity=0.238 Sum_probs=90.9
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhh-------hccCC
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPK 83 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~-------~~~~~ 83 (374)
+.+|+++++ |.+++|+|++|||||||+++|+|. .+|++|.|.++|.++..+ . .|.||
T Consensus 348 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~-----------~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q 415 (529)
T TIGR02868 348 PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGL-----------LDPLQGEVTLDGVSVSSL-QDELRRRISVFAQ 415 (529)
T ss_pred CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECCEEhhhH-HHHHHhheEEEcc
Confidence 458888875 556999999999999999999999 899999999999887655 3 58899
Q ss_pred CCccccchHhhHhhhhccccCCCC---------------CCCC--Cce-----eEecC------------CCCCchhHHH
Q 017295 84 SAVPAFLEIHDIAGLVRGAHEGQG---------------AFED--PDI-----IHVDD------------SVDPVRDLEV 129 (374)
Q Consensus 84 ~~~~~~~~v~D~~gl~~~~~~~~~---------------~~~~--~~i-----l~l~~------------~~dP~~~l~i 129 (374)
+....+-++.|+..++......+. .+.+ +.. ..+++ ..+| ++++
T Consensus 416 ~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~--~ili 493 (529)
T TIGR02868 416 DAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADA--PILL 493 (529)
T ss_pred CcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCC--CEEE
Confidence 885555688888877532111111 0000 000 11222 4688 9999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHH
Q 017295 130 ISAELRLKDIEFMERRIEDVEKS 152 (374)
Q Consensus 130 lde~l~~~D~~~~~~~~~~i~~~ 152 (374)
+|||++.+|.+....+.+.+.+.
T Consensus 494 LDE~TSaLD~~te~~I~~~l~~~ 516 (529)
T TIGR02868 494 LDEPTEHLDAGTESELLEDLLAA 516 (529)
T ss_pred EeCCcccCCHHHHHHHHHHHHHh
Confidence 99999999999888888777654
No 380
>PRK15494 era GTPase Era; Provisional
Probab=99.33 E-value=1e-11 Score=120.89 Aligned_cols=199 Identities=16% Similarity=0.227 Sum_probs=113.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhccccC
Q 017295 26 KIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Ltg~~~~~-s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~~~~~ 104 (374)
.|+|+|.||||||||+|.|+|.+..+ ++.|+||+....|.+.+++.+ +.++|+||+....+
T Consensus 54 kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~q-----------------i~~~DTpG~~~~~~- 115 (339)
T PRK15494 54 SVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQ-----------------VILYDTPGIFEPKG- 115 (339)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeE-----------------EEEEECCCcCCCcc-
Confidence 79999999999999999999988754 899999999888988887644 68899999853211
Q ss_pred CCCCCCCCceeEecCCCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCccchHHHHHHHHHHHHHHhCCCceecc
Q 017295 105 GQGAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 184 (374)
Q Consensus 105 ~~~~~~~~~il~l~~~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~H~~~~~~~~~d~v~~~L~~G~iv~~~ 184 (374)
.+ .+. .....+.. ..-+|-+..+++. ..
T Consensus 116 ---------------------~l---~~~-------~~r~~~~~----------------l~~aDvil~VvD~-----~~ 143 (339)
T PRK15494 116 ---------------------SL---EKA-------MVRCAWSS----------------LHSADLVLLIIDS-----LK 143 (339)
T ss_pred ---------------------cH---HHH-------HHHHHHHH----------------hhhCCEEEEEEEC-----CC
Confidence 00 000 00000000 0111211000110 01
Q ss_pred CCChhHHHHHHhccccccCCEEEEEcCCCccccccccccHHHHHHHHHhh-CCCeEEEeeHHHHHHhcCCChhHHHHHHH
Q 017295 185 DWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEH-GGEQIIPFSCALERNLADMPPDEAAKYCE 263 (374)
Q Consensus 185 ~~~~~~~~~l~~~~~~~~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~-~~~~~i~vSa~~e~~l~~l~~~~~~~~~~ 263 (374)
.++..+...+..+.. ..+|.|+|+||+|. .. .....+.+++... ...+++++||+.+.++.+|-. ...+++.
T Consensus 144 s~~~~~~~il~~l~~-~~~p~IlViNKiDl--~~---~~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~-~L~~~l~ 216 (339)
T PRK15494 144 SFDDITHNILDKLRS-LNIVPIFLLNKIDI--ES---KYLNDIKAFLTENHPDSLLFPISALSGKNIDGLLE-YITSKAK 216 (339)
T ss_pred CCCHHHHHHHHHHHh-cCCCEEEEEEhhcC--cc---ccHHHHHHHHHhcCCCcEEEEEeccCccCHHHHHH-HHHHhCC
Confidence 223332333333222 25789999999974 21 2244555555433 235799999999999876621 1111111
Q ss_pred --------hccc-c---ccHHHHH-HHHHhhcCceeeeccCCCCeeeEEecC
Q 017295 264 --------ENKV-Q---SALPKII-KTGFSAINLIYFFTAGPDEVKCWQIRR 302 (374)
Q Consensus 264 --------~~~~-~---~~l~~l~-~~~~~~L~li~~ft~~~~e~~~~~i~~ 302 (374)
++-. + --..+++ +++|..|+=--.|... -+...|.-++
T Consensus 217 ~~~~~~~~~~~td~~~~~~~~eiiRe~~~~~~~~EiP~~~~-v~i~~~~~~~ 267 (339)
T PRK15494 217 ISPWLYAEDDITDLPMRFIAAEITREQLFLNLQKELPYKLT-VQTEKWEDLK 267 (339)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCcccCceEE-EEEEEEEEcC
Confidence 1101 1 1123344 7788888876677665 4556777655
No 381
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.32 E-value=4.7e-13 Score=137.85 Aligned_cols=142 Identities=19% Similarity=0.208 Sum_probs=100.8
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhh-------hccCC
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPK 83 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~-------~~~~~ 83 (374)
+++|++++. |..++|+|+||||||||+|+|+|. .+|++|.|.++|.++..+.. .|.+|
T Consensus 335 ~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~-----------~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q 403 (529)
T TIGR02857 335 APALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGF-----------VDPTEGSIAVNGVPLADADADSWRDQIAWVPQ 403 (529)
T ss_pred cccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECCEehhhCCHHHHHhheEEEcC
Confidence 468888875 556999999999999999999999 88999999999988755421 57888
Q ss_pred CCccccchHhhHhhhhccccCCCC---------------CCCC--C-----ceeEecC------------CCCCchhHHH
Q 017295 84 SAVPAFLEIHDIAGLVRGAHEGQG---------------AFED--P-----DIIHVDD------------SVDPVRDLEV 129 (374)
Q Consensus 84 ~~~~~~~~v~D~~gl~~~~~~~~~---------------~~~~--~-----~il~l~~------------~~dP~~~l~i 129 (374)
+......++.|+..+......... .+.+ + .-..+++ ..+| ++++
T Consensus 404 ~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~--~ili 481 (529)
T TIGR02857 404 HPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDA--PLLL 481 (529)
T ss_pred CCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCC--CEEE
Confidence 874445688888877532111100 0000 0 0011222 5688 9999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHH
Q 017295 130 ISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRV 171 (374)
Q Consensus 130 lde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v 171 (374)
+|||++.+|....+...+.+.+.. ++.+ |++... ..||++
T Consensus 482 lDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~-~~~d~i 526 (529)
T TIGR02857 482 LDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLALA-ERADRI 526 (529)
T ss_pred EeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHH-HhCCEE
Confidence 999999999999999888887764 4444 887654 446654
No 382
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.32 E-value=2.3e-13 Score=120.07 Aligned_cols=134 Identities=13% Similarity=0.100 Sum_probs=87.0
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh--hhhccCCCCcc
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--CQLFKPKSAVP 87 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l--~~~~~~~~~~~ 87 (374)
.+.+|+++++ |..++|+||||||||||||+|.+ +.|.+.+.+..-... ...|.+|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~---------------~~G~v~~~~~~~~~~~~~~~~~~q---- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY---------------ASGKARLISFLPKFSRNKLIFIDQ---- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh---------------cCCcEEECCcccccccccEEEEhH----
Confidence 4577888876 45699999999999999999852 367777765411000 0112222
Q ss_pred ccchHhhHhhhhcc-ccCCCCCCCCCceeEecC------------CCC--CchhHHHHHHHHHhhcHHHHHHHHHHHHHH
Q 017295 88 AFLEIHDIAGLVRG-AHEGQGAFEDPDIIHVDD------------SVD--PVRDLEVISAELRLKDIEFMERRIEDVEKS 152 (374)
Q Consensus 88 ~~~~v~D~~gl~~~-~~~~~~~~~~~~il~l~~------------~~d--P~~~l~ilde~l~~~D~~~~~~~~~~i~~~ 152 (374)
..+.+..++... ... ....+++ +.+ | +++++|||+.++|....+.+.+.+.+.
T Consensus 68 --~~~l~~~~L~~~~~~~--------~~~~LSgGq~qrl~laral~~~~~p--~llLlDEPt~~LD~~~~~~l~~~l~~~ 135 (176)
T cd03238 68 --LQFLIDVGLGYLTLGQ--------KLSTLSGGELQRVKLASELFSEPPG--TLFILDEPSTGLHQQDINQLLEVIKGL 135 (176)
T ss_pred --HHHHHHcCCCccccCC--------CcCcCCHHHHHHHHHHHHHhhCCCC--CEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 344444444211 110 1111111 456 7 999999999999999999999988877
Q ss_pred HHccCc-----cchHHHHHHHHHHHHHHhCCCc
Q 017295 153 MKRSND-----KQLKIEHELCQRVKAWLQDGKD 180 (374)
Q Consensus 153 ~~~~~~-----H~~~~~~~~~d~v~~~L~~G~i 180 (374)
.+.+.+ |+...+ ..||++ .+|.+|..
T Consensus 136 ~~~g~tvIivSH~~~~~-~~~d~i-~~l~~g~~ 166 (176)
T cd03238 136 IDLGNTVILIEHNLDVL-SSADWI-IDFGPGSG 166 (176)
T ss_pred HhCCCEEEEEeCCHHHH-HhCCEE-EEECCCCC
Confidence 655544 988775 578888 77776654
No 383
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.31 E-value=2.6e-13 Score=154.42 Aligned_cols=156 Identities=17% Similarity=0.153 Sum_probs=111.7
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhh-------hccCC
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPK 83 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~-------~~~~~ 83 (374)
..||+++++ |.+|||||++|||||||+++|.|. .+|++|.|.++|.++..+.. .+.||
T Consensus 1299 ~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl-----------~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQ 1367 (1522)
T TIGR00957 1299 DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRI-----------NESAEGEIIIDGLNIAKIGLHDLRFKITIIPQ 1367 (1522)
T ss_pred cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------ccCCCCeEEECCEEccccCHHHHHhcCeEECC
Confidence 468999875 566999999999999999999999 89999999999998865432 57888
Q ss_pred CCccccchHhhHhhhhccccCCCC--------------CCCC--Ccee-----EecC------------CCCCchhHHHH
Q 017295 84 SAVPAFLEIHDIAGLVRGAHEGQG--------------AFED--PDII-----HVDD------------SVDPVRDLEVI 130 (374)
Q Consensus 84 ~~~~~~~~v~D~~gl~~~~~~~~~--------------~~~~--~~il-----~l~~------------~~dP~~~l~il 130 (374)
+.+...-++.+++.....++..+- .+.+ +..+ .+++ ..+| +++++
T Consensus 1368 dp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~--~ILiL 1445 (1522)
T TIGR00957 1368 DPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKT--KILVL 1445 (1522)
T ss_pred CCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCC--CEEEE
Confidence 874444577777753211110000 0000 0000 0111 4578 99999
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 131 SAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 131 de~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
||+++.+|.++-..+.+.+++.. +++| |.+..+.. +|+| .+|++|+++..|+.
T Consensus 1446 DEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~ti~~-~DrI-lVld~G~IvE~G~~ 1503 (1522)
T TIGR00957 1446 DEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLNTIMD-YTRV-IVLDKGEVAEFGAP 1503 (1522)
T ss_pred ECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHh-CCEE-EEEECCEEEEECCH
Confidence 99999999998877777776654 4455 98877554 8999 99999999988754
No 384
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.30 E-value=1.8e-11 Score=108.14 Aligned_cols=55 Identities=35% Similarity=0.338 Sum_probs=46.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCC--CCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhh
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLA--IPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~--~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~ 99 (374)
..|+++|++|+|||||+|+|+|.+ +.+|..||.|..++.-.+ ++ .+.++|.||++
T Consensus 25 ~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~--~~------------------~~~lVDlPGYG 81 (200)
T COG0218 25 PEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEV--DD------------------ELRLVDLPGYG 81 (200)
T ss_pred cEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEe--cC------------------cEEEEeCCCcc
Confidence 459999999999999999999988 678999999998875444 22 26789999985
No 385
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=4.2e-12 Score=110.57 Aligned_cols=128 Identities=17% Similarity=0.200 Sum_probs=87.9
Q ss_pred ccccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhh------hccC
Q 017295 13 AERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ------LFKP 82 (374)
Q Consensus 13 ~~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~------~~~~ 82 (374)
+++.+|.++++ |..+-|.||||||||||+++|+|+ ..|+.|+|.++|..+..... .|..
T Consensus 13 ~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGL-----------l~p~~G~v~~~~~~i~~~~~~~~~~l~yLG 81 (209)
T COG4133 13 GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGL-----------LRPDAGEVYWQGEPIQNVRESYHQALLYLG 81 (209)
T ss_pred CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcc-----------cCCCCCeEEecCCCCccchhhHHHHHHHhh
Confidence 56778888776 455999999999999999999999 89999999999887654332 2332
Q ss_pred -CCCccccchHhhHhhhhccccCCCC--------------CCCCCceeEecC------------CCCCchhHHHHHHHHH
Q 017295 83 -KSAVPAFLEIHDIAGLVRGAHEGQG--------------AFEDPDIIHVDD------------SVDPVRDLEVISAELR 135 (374)
Q Consensus 83 -~~~~~~~~~v~D~~gl~~~~~~~~~--------------~~~~~~il~l~~------------~~dP~~~l~ilde~l~ 135 (374)
+.-+-..+++.++.-|....+.... .+.+-++-.++- ...+ .+-++|||+.
T Consensus 82 H~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~--pLWiLDEP~t 159 (209)
T COG4133 82 HQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPA--PLWILDEPFT 159 (209)
T ss_pred ccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCC--CceeecCccc
Confidence 2335566888888888765554311 222222222222 1222 6889999999
Q ss_pred hhcHHHHHHHHHHHHHHH
Q 017295 136 LKDIEFMERRIEDVEKSM 153 (374)
Q Consensus 136 ~~D~~~~~~~~~~i~~~~ 153 (374)
.+|...+...-..+....
T Consensus 160 aLDk~g~a~l~~l~~~H~ 177 (209)
T COG4133 160 ALDKEGVALLTALMAAHA 177 (209)
T ss_pred ccCHHHHHHHHHHHHHHh
Confidence 999887766555554433
No 386
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.30 E-value=8.2e-12 Score=132.74 Aligned_cols=59 Identities=36% Similarity=0.501 Sum_probs=51.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhc
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~-~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~ 100 (374)
.+|+|+|++|||||||+|.|++.... ++++|+||.++....+.++|.+ +.++|++|+.+
T Consensus 451 ~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~-----------------~~liDTaG~~~ 510 (712)
T PRK09518 451 RRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED-----------------WLFIDTAGIKR 510 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE-----------------EEEEECCCccc
Confidence 67999999999999999999998764 5999999999998888887754 56889999854
No 387
>PLN03073 ABC transporter F family; Provisional
Probab=99.30 E-value=3.7e-13 Score=142.38 Aligned_cols=145 Identities=12% Similarity=0.153 Sum_probs=94.4
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccc
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFL 90 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~ 90 (374)
+.+|+++++ |..+||+|+||||||||+++|+|. +.|++|.|.+.+.. ...|.+|.... .+
T Consensus 522 ~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gl-----------l~p~~G~I~~~~~~----~igyv~Q~~~~-~l 585 (718)
T PLN03073 522 PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGE-----------LQPSSGTVFRSAKV----RMAVFSQHHVD-GL 585 (718)
T ss_pred CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCCceEEECCce----eEEEEeccccc-cC
Confidence 357888875 456999999999999999999999 88999999886531 11233333211 11
Q ss_pred hHhhHh--hhhccccC-CCC---------CC----CCCceeEecC------------CCCCchhHHHHHHHHHhhcHHHH
Q 017295 91 EIHDIA--GLVRGAHE-GQG---------AF----EDPDIIHVDD------------SVDPVRDLEVISAELRLKDIEFM 142 (374)
Q Consensus 91 ~v~D~~--gl~~~~~~-~~~---------~~----~~~~il~l~~------------~~dP~~~l~ilde~l~~~D~~~~ 142 (374)
++.++. .+...... ... .+ ....+-.+++ ..+| +++++|||++++|+...
T Consensus 586 ~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p--~lLLLDEPT~~LD~~s~ 663 (718)
T PLN03073 586 DLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP--HILLLDEPSNHLDLDAV 663 (718)
T ss_pred CcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCC--CEEEEcCCCCCCCHHHH
Confidence 111110 00000000 000 11 1112223333 5688 99999999999999998
Q ss_pred HHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCce
Q 017295 143 ERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDV 181 (374)
Q Consensus 143 ~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv 181 (374)
..+.+.+... . ++ |+...+..+||++ .+|++|+++
T Consensus 664 ~~l~~~L~~~--~-gtvIivSHd~~~i~~~~drv-~~l~~G~i~ 703 (718)
T PLN03073 664 EALIQGLVLF--Q-GGVLMVSHDEHLISGSVDEL-WVVSEGKVT 703 (718)
T ss_pred HHHHHHHHHc--C-CEEEEEECCHHHHHHhCCEE-EEEECCEEE
Confidence 8877766543 2 33 9999999999999 889999887
No 388
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.30 E-value=5.7e-13 Score=140.03 Aligned_cols=157 Identities=18% Similarity=0.221 Sum_probs=98.9
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcc-hhhhhhhccCC--CCc
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER-FEWLCQLFKPK--SAV 86 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~-~~~l~~~~~~~--~~~ 86 (374)
++.+|+++++ |..+||+|+|||||||||++|+|. ..|++|.|.+++.. +..+.+..... ..+
T Consensus 15 ~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~-----------~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~v 83 (635)
T PRK11147 15 DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGE-----------VLLDDGRIIYEQDLIVARLQQDPPRNVEGTV 83 (635)
T ss_pred CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCC-----------CCCCCeEEEeCCCCEEEEeccCCCCCCCCCH
Confidence 4578998885 556999999999999999999999 78999999987632 11211100000 000
Q ss_pred cccc-----------hHh-------------hHhhhhcc----c--cCCCC------------CC-CCCceeEecC----
Q 017295 87 PAFL-----------EIH-------------DIAGLVRG----A--HEGQG------------AF-EDPDIIHVDD---- 119 (374)
Q Consensus 87 ~~~~-----------~v~-------------D~~gl~~~----~--~~~~~------------~~-~~~~il~l~~---- 119 (374)
+..+ +.. ++...... . ..+.. .+ .+..+-.+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~LSgGekq 163 (635)
T PRK11147 84 YDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSLSGGWLR 163 (635)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCchhhcCHHHHH
Confidence 0000 000 00000000 0 00000 11 1222333443
Q ss_pred --------CCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccC----ccchHHHHHHHHHHHHHHhCCCcee-ccCC
Q 017295 120 --------SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSN----DKQLKIEHELCQRVKAWLQDGKDVR-LGDW 186 (374)
Q Consensus 120 --------~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~----~H~~~~~~~~~d~v~~~L~~G~iv~-~~~~ 186 (374)
+.+| +++++|||++.+|+.....+.+.+.... +. +|+...+..+|+++ ..|++|+++. .|++
T Consensus 164 Rv~LAraL~~~P--~lLLLDEPt~~LD~~~~~~L~~~L~~~~--~tvlivsHd~~~l~~~~d~i-~~L~~G~i~~~~g~~ 238 (635)
T PRK11147 164 KAALGRALVSNP--DVLLLDEPTNHLDIETIEWLEGFLKTFQ--GSIIFISHDRSFIRNMATRI-VDLDRGKLVSYPGNY 238 (635)
T ss_pred HHHHHHHHhcCC--CEEEEcCCCCccCHHHHHHHHHHHHhCC--CEEEEEeCCHHHHHHhcCeE-EEEECCEEEEecCCH
Confidence 5689 9999999999999999998888887652 21 29999999999999 8999999874 3444
No 389
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.29 E-value=7.6e-12 Score=125.59 Aligned_cols=59 Identities=32% Similarity=0.403 Sum_probs=50.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhc
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~-~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~ 100 (374)
.+++++|.+|+|||||+|.|+|... .++++|+||.++....+.++|.. +.++|++|+.+
T Consensus 173 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~-----------------~~liDT~G~~~ 232 (429)
T TIGR03594 173 IKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKK-----------------YLLIDTAGIRR 232 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcE-----------------EEEEECCCccc
Confidence 5799999999999999999999865 45899999999988888777644 68899999854
No 390
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.29 E-value=4.1e-13 Score=151.69 Aligned_cols=167 Identities=11% Similarity=0.085 Sum_probs=116.6
Q ss_pred ccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCC-CC------------------------------------
Q 017295 15 RPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPA-EN------------------------------------ 53 (374)
Q Consensus 15 ~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~-s~------------------------------------ 53 (374)
.+||+++++. ..+||||++|||||||+++|+|..-+. ++
T Consensus 1181 ~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1260 (1466)
T PTZ00265 1181 VPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSL 1260 (1466)
T ss_pred CccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccccccccccccc
Confidence 4689998864 559999999999999999999984421 00
Q ss_pred ------CCCcccCCceeEEEeCCcchhhhhh-------hccCCCCccccchHhhHhhhhccccCCCC-------------
Q 017295 54 ------FPFCTIEPNEARVNIPDERFEWLCQ-------LFKPKSAVPAFLEIHDIAGLVRGAHEGQG------------- 107 (374)
Q Consensus 54 ------~pftT~~p~~G~i~~~g~~~~~l~~-------~~~~~~~~~~~~~v~D~~gl~~~~~~~~~------------- 107 (374)
-+-+|..|++|.|.++|.++..+.. .|++|+......++.|++.++........
T Consensus 1261 ~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~f 1340 (1466)
T PTZ00265 1261 TKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEF 1340 (1466)
T ss_pred ccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHH
Confidence 1223455689999999998865432 58899986667899999988643111000
Q ss_pred --CCCC--Cce-----eEecC------------CCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHH-ccCc-----cc
Q 017295 108 --AFED--PDI-----IHVDD------------SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMK-RSND-----KQ 160 (374)
Q Consensus 108 --~~~~--~~i-----l~l~~------------~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~-~~~~-----H~ 160 (374)
.+.+ +.. ..+++ ..+| +++++||+++.+|.++.+.+.+.+.+... ++.| |.
T Consensus 1341 I~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p--~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHR 1418 (1466)
T PTZ00265 1341 IESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREP--KILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHR 1418 (1466)
T ss_pred HHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCC--CEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEech
Confidence 0000 000 11222 5689 99999999999999998888888877642 3444 98
Q ss_pred hHHHHHHHHHHHHHHhC----CCce-eccC
Q 017295 161 LKIEHELCQRVKAWLQD----GKDV-RLGD 185 (374)
Q Consensus 161 ~~~~~~~~d~v~~~L~~----G~iv-~~~~ 185 (374)
+..+ ..||+| .+|++ |+++ ..|+
T Consensus 1419 lsti-~~aD~I-vvl~~~~~~G~iv~e~Gt 1446 (1466)
T PTZ00265 1419 IASI-KRSDKI-VVFNNPDRTGSFVQAHGT 1446 (1466)
T ss_pred HHHH-HhCCEE-EEEeCCCCCCCEEEEecC
Confidence 8664 569999 89998 8855 4554
No 391
>PTZ00243 ABC transporter; Provisional
Probab=99.29 E-value=2.9e-13 Score=153.99 Aligned_cols=156 Identities=15% Similarity=0.151 Sum_probs=110.9
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhh-------hccCC
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPK 83 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~-------~~~~~ 83 (374)
..||+++++ |.+|||||++|||||||+++|.|. .+|++|.|.++|.++..+.. .+.||
T Consensus 1323 ~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl-----------~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQ 1391 (1560)
T PTZ00243 1323 PLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRM-----------VEVCGGEIRVNGREIGAYGLRELRRQFSMIPQ 1391 (1560)
T ss_pred CceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEEcccCCHHHHHhcceEECC
Confidence 358998875 566999999999999999999999 89999999999998765332 57899
Q ss_pred CCccccchHhhHhhhhccccCCCC-------CCC----------CCce----eEecC------------CCC-CchhHHH
Q 017295 84 SAVPAFLEIHDIAGLVRGAHEGQG-------AFE----------DPDI----IHVDD------------SVD-PVRDLEV 129 (374)
Q Consensus 84 ~~~~~~~~v~D~~gl~~~~~~~~~-------~~~----------~~~i----l~l~~------------~~d-P~~~l~i 129 (374)
+.+...-++.+++.....++..+- .+. +..+ ..+++ ..+ | .+++
T Consensus 1392 dp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~--~ILl 1469 (1560)
T PTZ00243 1392 DPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGS--GFIL 1469 (1560)
T ss_pred CCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCC--CEEE
Confidence 875445578777754211110000 000 0000 01111 233 6 8999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 130 ISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 130 lde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
+||+++.+|.++-..+.+.+.+.. +++| |.+..+ ..||+| .+|++|+++..|..
T Consensus 1470 LDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~ti-~~~DrI-lVLd~G~VvE~Gt~ 1528 (1560)
T PTZ00243 1470 MDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLHTV-AQYDKI-IVMDHGAVAEMGSP 1528 (1560)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHHHH-HhCCEE-EEEECCEEEEECCH
Confidence 999999999998888877777643 3454 988765 458999 99999999987754
No 392
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.28 E-value=7.2e-13 Score=130.33 Aligned_cols=158 Identities=20% Similarity=0.180 Sum_probs=109.2
Q ss_pred cccccccccCCce----EEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhh-------hccC
Q 017295 14 ERPILGRFSSHLK----IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKP 82 (374)
Q Consensus 14 ~~~vL~~i~~~~~----vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~-------~~~~ 82 (374)
.+++|+++++... +|||||+|||||||.++|.|. ..|.+|.|.++|.++++..+ +|.|
T Consensus 348 ~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~-----------w~p~~G~VRLDga~l~qWd~e~lG~hiGYLP 416 (580)
T COG4618 348 KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGI-----------WPPTSGSVRLDGADLRQWDREQLGRHIGYLP 416 (580)
T ss_pred CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcc-----------cccCCCcEEecchhhhcCCHHHhccccCcCc
Confidence 5689999987554 999999999999999999999 88999999999988866443 5888
Q ss_pred CCCccccchHhhHhhhhc----------------------cccCCCCCCCCCceeEecC------------CCCCchhHH
Q 017295 83 KSAVPAFLEIHDIAGLVR----------------------GAHEGQGAFEDPDIIHVDD------------SVDPVRDLE 128 (374)
Q Consensus 83 ~~~~~~~~~v~D~~gl~~----------------------~~~~~~~~~~~~~il~l~~------------~~dP~~~l~ 128 (374)
|..-...-++.++..-.. ....|......+.=..+++ .-|| .+.
T Consensus 417 QdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P--~lv 494 (580)
T COG4618 417 QDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDP--FLV 494 (580)
T ss_pred ccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCC--cEE
Confidence 875211223333322110 0000000000000000111 2367 788
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 129 VISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 129 ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
++|||-+.+|-+.-....+.|....+++++ |... ++..+|+| .+|++|++...|+-
T Consensus 495 VLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs-~L~~~Dki-lvl~~G~~~~FG~r 555 (580)
T COG4618 495 VLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS-ALASVDKI-LVLQDGRIAAFGPR 555 (580)
T ss_pred EecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH-HHhhccee-eeecCChHHhcCCH
Confidence 889999999999888888888888778876 7654 56779999 99999999888753
No 393
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.28 E-value=8e-12 Score=108.14 Aligned_cols=59 Identities=29% Similarity=0.426 Sum_probs=48.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhc
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~-~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~ 100 (374)
.+|+++|.+|+|||||+|.|++... ..+++|++|.....+.+...+.+ +.++|++|+..
T Consensus 3 ~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~iiDtpG~~~ 62 (174)
T cd01895 3 IRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKK-----------------YTLIDTAGIRR 62 (174)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCee-----------------EEEEECCCCcc
Confidence 4689999999999999999999864 34889999988877777776543 57888888753
No 394
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.27 E-value=8.6e-12 Score=125.45 Aligned_cols=60 Identities=30% Similarity=0.417 Sum_probs=50.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhc
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~~-~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~ 100 (374)
..+++|+|.+|+|||||+|+|+|... .++++|+||++.....+..++.+ +.++|++|+.+
T Consensus 173 ~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~-----------------~~lvDT~G~~~ 233 (435)
T PRK00093 173 PIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQK-----------------YTLIDTAGIRR 233 (435)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCee-----------------EEEEECCCCCC
Confidence 47799999999999999999999875 45899999998876666666544 67899999854
No 395
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.27 E-value=4.8e-13 Score=138.37 Aligned_cols=151 Identities=12% Similarity=0.046 Sum_probs=100.5
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-----h--hccCC
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----Q--LFKPK 83 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-----~--~~~~~ 83 (374)
+++|+++++ |..++|+|+||||||||+++|+|. .+|++|.|.++|.++.... . .|.+|
T Consensus 336 ~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q 404 (547)
T PRK10522 336 GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGL-----------YQPQSGEILLDGKPVTAEQPEDYRKLFSAVFT 404 (547)
T ss_pred CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeEEEECCEECCCCCHHHHhhheEEEec
Confidence 458888874 566999999999999999999999 8899999999998765322 1 36666
Q ss_pred CCccccchHhhH---------------hhhhccccCCCCCCCCCceeEecC------------CCCCchhHHHHHHHHHh
Q 017295 84 SAVPAFLEIHDI---------------AGLVRGAHEGQGAFEDPDIIHVDD------------SVDPVRDLEVISAELRL 136 (374)
Q Consensus 84 ~~~~~~~~v~D~---------------~gl~~~~~~~~~~~~~~~il~l~~------------~~dP~~~l~ilde~l~~ 136 (374)
+.....-++.++ .++......+.+.. .-..+++ ..+| +++++|||+++
T Consensus 405 ~~~lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~G~~LSgGq~qRl~lARal~~~~--~ililDE~ts~ 479 (547)
T PRK10522 405 DFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRI---SNLKLSKGQKKRLALLLALAEER--DILLLDEWAAD 479 (547)
T ss_pred ChhHHHHhhccccCchHHHHHHHHHHHcCCchhhhccccCC---CCCCCCHHHHHHHHHHHHHhcCC--CEEEEECCCCC
Confidence 652222222222 11110000000000 0011222 4678 99999999999
Q ss_pred hcHHHHHHHHHHHHHHHH-ccCc-----cchHHHHHHHHHHHHHHhCCCceec
Q 017295 137 KDIEFMERRIEDVEKSMK-RSND-----KQLKIEHELCQRVKAWLQDGKDVRL 183 (374)
Q Consensus 137 ~D~~~~~~~~~~i~~~~~-~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~ 183 (374)
+|........+.+.+..+ .+.+ |+... ...||++ .+|++|+++..
T Consensus 480 LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~-~~~~d~i-~~l~~G~i~e~ 530 (547)
T PRK10522 480 QDPHFRREFYQVLLPLLQEMGKTIFAISHDDHY-FIHADRL-LEMRNGQLSEL 530 (547)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEEechHH-HHhCCEE-EEEECCEEEEe
Confidence 999998888787765443 3444 98754 5679999 88999998754
No 396
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.26 E-value=1.6e-12 Score=146.96 Aligned_cols=150 Identities=11% Similarity=0.102 Sum_probs=107.0
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeC-Ccchhhh-----hh--hccC
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIP-DERFEWL-----CQ--LFKP 82 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~-g~~~~~l-----~~--~~~~ 82 (374)
.++|+++++ |..+||+|+||||||||+++|+|. ++|++|.|.++ |.++..+ .. .|++
T Consensus 398 ~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl-----------~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~ 466 (1466)
T PTZ00265 398 VEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERL-----------YDPTEGDIIINDSHNLKDINLKWWRSKIGVVS 466 (1466)
T ss_pred CceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHh-----------ccCCCCeEEEeCCcchhhCCHHHHHHhccEec
Confidence 468998876 456999999999999999999999 89999999994 5665432 11 5778
Q ss_pred CCCccccchHhhHhhhhccccC------------------------------------------------------CCC-
Q 017295 83 KSAVPAFLEIHDIAGLVRGAHE------------------------------------------------------GQG- 107 (374)
Q Consensus 83 ~~~~~~~~~v~D~~gl~~~~~~------------------------------------------------------~~~- 107 (374)
|.......++.|++.++..... ...
T Consensus 467 Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 546 (1466)
T PTZ00265 467 QDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKD 546 (1466)
T ss_pred ccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCH
Confidence 8863334588888877431000 000
Q ss_pred -------------CC----C-------CCceeEecC------------CCCCchhHHHHHHHHHhhcHHHHHHHHHHHHH
Q 017295 108 -------------AF----E-------DPDIIHVDD------------SVDPVRDLEVISAELRLKDIEFMERRIEDVEK 151 (374)
Q Consensus 108 -------------~~----~-------~~~il~l~~------------~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~ 151 (374)
.| . ......+++ ..+| +++++|||++.+|......+.+.+.+
T Consensus 547 ~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P--~ILlLDEpTSaLD~~se~~i~~~L~~ 624 (1466)
T PTZ00265 547 SEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNP--KILILDEATSSLDNKSEYLVQKTINN 624 (1466)
T ss_pred HHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCC--CEEEEeCcccccCHHHHHHHHHHHHH
Confidence 00 0 000111222 5789 99999999999999999999898888
Q ss_pred HHH-ccCc-----cchHHHHHHHHHHHHHHhCCC
Q 017295 152 SMK-RSND-----KQLKIEHELCQRVKAWLQDGK 179 (374)
Q Consensus 152 ~~~-~~~~-----H~~~~~~~~~d~v~~~L~~G~ 179 (374)
..+ ++.+ |++..+ ..||+| .+|++|+
T Consensus 625 ~~~~~g~TvIiIsHrls~i-~~aD~I-ivl~~g~ 656 (1466)
T PTZ00265 625 LKGNENRITIIIAHRLSTI-RYANTI-FVLSNRE 656 (1466)
T ss_pred HhhcCCCEEEEEeCCHHHH-HhCCEE-EEEeCCc
Confidence 764 3444 999876 679999 8888874
No 397
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.26 E-value=6.1e-13 Score=137.82 Aligned_cols=153 Identities=16% Similarity=0.034 Sum_probs=99.5
Q ss_pred cccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhh-------hccCCC
Q 017295 16 PILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPKS 84 (374)
Q Consensus 16 ~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~-------~~~~~~ 84 (374)
.+|+++++ |..++|+|+||||||||+++|+|. .+|++|.|.++|.++..... .+.+|+
T Consensus 356 ~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~-----------~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~ 424 (555)
T TIGR01194 356 FALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGL-----------YIPQEGEILLDGAAVSADSRDDYRDLFSAIFAD 424 (555)
T ss_pred ceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEECCCCCHHHHHhhCcEEccC
Confidence 58888775 556999999999999999999999 88999999999988754321 355665
Q ss_pred CccccchHhhHhh----------hhccccCCCC--CCC--CCceeEecC------------CCCCchhHHHHHHHHHhhc
Q 017295 85 AVPAFLEIHDIAG----------LVRGAHEGQG--AFE--DPDIIHVDD------------SVDPVRDLEVISAELRLKD 138 (374)
Q Consensus 85 ~~~~~~~v~D~~g----------l~~~~~~~~~--~~~--~~~il~l~~------------~~dP~~~l~ilde~l~~~D 138 (374)
.....-++.++.. ..+.+.-... .+. .+....+++ ..+| +++++|||++.+|
T Consensus 425 ~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~--~ililDE~ts~LD 502 (555)
T TIGR01194 425 FHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDR--PILLFDEWAADQD 502 (555)
T ss_pred hhhhhhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCC--CEEEEeCCccCCC
Confidence 4211122222210 0000000000 000 001122333 4688 9999999999999
Q ss_pred HHHHHHHHHHHH-HHHHccCc-----cchHHHHHHHHHHHHHHhCCCceec
Q 017295 139 IEFMERRIEDVE-KSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRL 183 (374)
Q Consensus 139 ~~~~~~~~~~i~-~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~ 183 (374)
....+...+.+. .....+.+ |++.. ...||++ .+|++|+++..
T Consensus 503 ~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~-~~~~d~i-~~l~~G~i~~~ 551 (555)
T TIGR01194 503 PAFKRFFYEELLPDLKRQGKTIIIISHDDQY-FELADQI-IKLAAGCIVKD 551 (555)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEeccHHH-HHhCCEE-EEEECCEEEEe
Confidence 999888777654 33334554 98864 5679999 88999988643
No 398
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.26 E-value=1.1e-11 Score=106.13 Aligned_cols=54 Identities=43% Similarity=0.657 Sum_probs=47.6
Q ss_pred EEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhh
Q 017295 29 IVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (374)
Q Consensus 29 LvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~ 99 (374)
|+|.+|+|||||++.++|....++++|++|..+..+.+.+++.. +.++|+||+.
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-----------------~~liDtpG~~ 54 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKE-----------------IEIVDLPGTY 54 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeE-----------------EEEEECCCcc
Confidence 58999999999999999987777999999999999999887643 7889999874
No 399
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.25 E-value=1.6e-11 Score=123.35 Aligned_cols=64 Identities=30% Similarity=0.409 Sum_probs=54.8
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhh
Q 017295 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAG 97 (374)
Q Consensus 19 ~~i~~~~~vgLvG~nGaGKSTL~n~Ltg~~~-~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~g 97 (374)
..+..+.+|+|+|+||+|||||+|.|++... .++++|+||.++..+.+.++|.+ +.++|++|
T Consensus 198 ~~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~-----------------v~l~DTaG 260 (442)
T TIGR00450 198 EKLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGIL-----------------IKLLDTAG 260 (442)
T ss_pred HHhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEE-----------------EEEeeCCC
Confidence 3456678899999999999999999999865 45999999999999999988754 67899998
Q ss_pred hh
Q 017295 98 LV 99 (374)
Q Consensus 98 l~ 99 (374)
+.
T Consensus 261 ~~ 262 (442)
T TIGR00450 261 IR 262 (442)
T ss_pred cc
Confidence 73
No 400
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.24 E-value=2.7e-11 Score=104.86 Aligned_cols=47 Identities=23% Similarity=0.337 Sum_probs=36.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCc
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDE 71 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~ 71 (374)
.+++++|++|||||||++.+++........|.++.+.....+.+++.
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~ 50 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGK 50 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCE
Confidence 46999999999999999999988765566677666655666666653
No 401
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.24 E-value=1.2e-11 Score=124.69 Aligned_cols=62 Identities=32% Similarity=0.410 Sum_probs=53.5
Q ss_pred ccCCceEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhh
Q 017295 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (374)
Q Consensus 21 i~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~-~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~ 99 (374)
+..+.+|+|+|.+|||||||+|.|++.... ++++||||.++....+.++|.+ +.++|++|+.
T Consensus 212 ~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~-----------------i~l~DT~G~~ 274 (449)
T PRK05291 212 LREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIP-----------------LRLIDTAGIR 274 (449)
T ss_pred hhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeE-----------------EEEEeCCCCC
Confidence 345678999999999999999999998764 5999999999999999887754 6889999873
No 402
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=2e-11 Score=119.73 Aligned_cols=65 Identities=37% Similarity=0.520 Sum_probs=58.3
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhh
Q 017295 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAG 97 (374)
Q Consensus 19 ~~i~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~-s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~g 97 (374)
+++..+.+++|+|+||+|||||+|+|+...+.+ ++.|+||++...-.+.++|.+ +.+.|++|
T Consensus 263 e~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~-----------------v~L~DTAG 325 (531)
T KOG1191|consen 263 ERLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVP-----------------VRLSDTAG 325 (531)
T ss_pred HHhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeE-----------------EEEEeccc
Confidence 345567889999999999999999999999876 999999999999999999976 78899999
Q ss_pred hhc
Q 017295 98 LVR 100 (374)
Q Consensus 98 l~~ 100 (374)
+-.
T Consensus 326 iRe 328 (531)
T KOG1191|consen 326 IRE 328 (531)
T ss_pred ccc
Confidence 865
No 403
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.22 E-value=1.4e-12 Score=148.18 Aligned_cols=156 Identities=13% Similarity=0.171 Sum_probs=109.6
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhh-------hccC
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKP 82 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~-------~~~~ 82 (374)
.+.+|+++++ |.+|||||++|||||||+++|.|. .+ .+|.|.++|.++..+.. .+.|
T Consensus 1231 ~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl-----------~~-~~G~I~IdG~di~~i~~~~lR~~is~Ip 1298 (1490)
T TIGR01271 1231 GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRL-----------LS-TEGEIQIDGVSWNSVTLQTWRKAFGVIP 1298 (1490)
T ss_pred CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhh-----------cC-CCcEEEECCEEcccCCHHHHHhceEEEe
Confidence 4678998876 566999999999999999999999 55 68999999998765432 5788
Q ss_pred CCCccccchHhhHhhhhccccCCCC-------C-------CCC--Ccee-----EecC------------CCCCchhHHH
Q 017295 83 KSAVPAFLEIHDIAGLVRGAHEGQG-------A-------FED--PDII-----HVDD------------SVDPVRDLEV 129 (374)
Q Consensus 83 ~~~~~~~~~v~D~~gl~~~~~~~~~-------~-------~~~--~~il-----~l~~------------~~dP~~~l~i 129 (374)
|+.+...-++.+++......+...- . +.+ +..+ .+++ ..+| ++++
T Consensus 1299 Qdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~--~ILl 1376 (1490)
T TIGR01271 1299 QKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKA--KILL 1376 (1490)
T ss_pred CCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCC--CEEE
Confidence 8874444577777643211000000 0 000 0000 0111 3567 8999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 130 ISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 130 lde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
+|||++.+|..+-..+.+.|.... +++| |.+..+. .+|+| .+|++|+++..+.+
T Consensus 1377 LDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~ti~-~~DrI-lvL~~G~ivE~g~p 1435 (1490)
T TIGR01271 1377 LDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVEALL-ECQQF-LVIEGSSVKQYDSI 1435 (1490)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHH-hCCEE-EEEECCEEEEeCCH
Confidence 999999999999888888887654 4455 9987655 49999 99999999977653
No 404
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.22 E-value=1e-11 Score=124.62 Aligned_cols=57 Identities=33% Similarity=0.412 Sum_probs=50.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhh
Q 017295 26 KIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Ltg~~~~-~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~ 99 (374)
+|+|||+||+|||||||.|+|.... ++++|++|.++..+.+.++|.. +.++|++|+.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~-----------------~~liDTpG~~ 58 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGRE-----------------FILIDTGGIE 58 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeE-----------------EEEEECCCCC
Confidence 3799999999999999999998764 4899999999999999988764 7889999973
No 405
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.21 E-value=4.2e-11 Score=105.76 Aligned_cols=57 Identities=32% Similarity=0.284 Sum_probs=43.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCC--CCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhc
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLA--IPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~--~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~ 100 (374)
...|+|+|++|+|||||+|.|++.. ..+++.|++|..+....+ ++ .+.++|++|+..
T Consensus 18 ~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~~------------------~~~liDtpG~~~ 76 (179)
T TIGR03598 18 GPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--ND------------------GFRLVDLPGYGY 76 (179)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--CC------------------cEEEEeCCCCcc
Confidence 4569999999999999999999975 355888988876654332 11 278899999753
No 406
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.20 E-value=2.1e-11 Score=103.87 Aligned_cols=59 Identities=32% Similarity=0.406 Sum_probs=49.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhh
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~~-~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~ 99 (374)
|.+++++|++|||||||++.|++... .++++|++|.++..+.+.+.+.+ +.++|++|+.
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~i~DtpG~~ 60 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIP-----------------VRLIDTAGIR 60 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEE-----------------EEEEECCCcC
Confidence 56899999999999999999999875 45899999999888887776533 6788999874
No 407
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.20 E-value=1.1e-10 Score=100.43 Aligned_cols=46 Identities=15% Similarity=0.194 Sum_probs=40.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCc
Q 017295 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDE 71 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~ 71 (374)
+++++|++|||||||++.+++.....+..|.+|.+.....+.+++.
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDK 47 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCE
Confidence 5899999999999999999999887788888888888888877664
No 408
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.20 E-value=1.9e-11 Score=105.21 Aligned_cols=57 Identities=30% Similarity=0.380 Sum_probs=40.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCCC---CCCCCcccCCceeEEEeC-CcchhhhhhhccCCCCccccchHhhHhhh
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA---ENFPFCTIEPNEARVNIP-DERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~~---s~~pftT~~p~~G~i~~~-g~~~~~l~~~~~~~~~~~~~~~v~D~~gl 98 (374)
+.|+++|.+|||||||+|+|+|..... ...|++|.++....+.+. +. .++++|++|.
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-----------------~~~~~DtpG~ 61 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGK-----------------RLGFIDVPGH 61 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCc-----------------EEEEEECCCh
Confidence 368999999999999999999864321 234667777666665554 21 2677888875
No 409
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.18 E-value=1.3e-12 Score=127.63 Aligned_cols=158 Identities=15% Similarity=0.200 Sum_probs=106.9
Q ss_pred ccccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhh-------hcc
Q 017295 13 AERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFK 81 (374)
Q Consensus 13 ~~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~-------~~~ 81 (374)
.++++|+++++ |..++||||+|+||||++++|.+. .+.++|.|.++|+++....+ +.+
T Consensus 549 p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRf-----------fdv~sGsI~iDgqdIrnvt~~SLRs~IGVV 617 (790)
T KOG0056|consen 549 PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRF-----------FDVNSGSITIDGQDIRNVTQSSLRSSIGVV 617 (790)
T ss_pred CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHH-----------hhccCceEEEcCchHHHHHHHHHHHhcCcc
Confidence 47889999986 456999999999999999999999 89999999999999876443 578
Q ss_pred CCCCccccchHhhHhhhhccccCCCC---------------CCCC-------CceeEecC------------CCCCchhH
Q 017295 82 PKSAVPAFLEIHDIAGLVRGAHEGQG---------------AFED-------PDIIHVDD------------SVDPVRDL 127 (374)
Q Consensus 82 ~~~~~~~~~~v~D~~gl~~~~~~~~~---------------~~~~-------~~il~l~~------------~~dP~~~l 127 (374)
||+.+..+-++.++..+++.....+. .|.. ..=+.+++ ..+| .+
T Consensus 618 PQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P--~i 695 (790)
T KOG0056|consen 618 PQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAP--SI 695 (790)
T ss_pred cCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCC--cE
Confidence 88875544455555554332111111 0000 00011111 2467 88
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHccCc----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 128 EVISAELRLKDIEFMERRIEDVEKSMKRSND----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 128 ~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
.++||.++.+|-..-..+...+.++.....+ |.+.-+.. +|.| .++++|+|+..|.
T Consensus 696 IlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivn-AD~I-Lvi~~G~IvErG~ 755 (790)
T KOG0056|consen 696 ILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVN-ADLI-LVISNGRIVERGR 755 (790)
T ss_pred EEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheec-ccEE-EEEeCCeEeecCc
Confidence 8899999999988766666667666632222 76654332 5666 7788898887664
No 410
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.18 E-value=3.3e-12 Score=145.20 Aligned_cols=150 Identities=19% Similarity=0.241 Sum_probs=104.7
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccc
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFL 90 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~ 90 (374)
+.+|+++++ |..++|+|+||||||||+++|+|. .+|+.|.|.++|. ..|.+|.......
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~-----------~~~~~G~i~~~g~------iayv~Q~~~l~~~ 501 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGE-----------LEPSEGKIKHSGR------ISFSPQTSWIMPG 501 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCE------EEEEeCCCccCCc
Confidence 468998875 556999999999999999999999 8899999999872 2466666522224
Q ss_pred hHhhHhhhhccccCCC--C------------CCC-------CCceeEecC------------CCCCchhHHHHHHHHHhh
Q 017295 91 EIHDIAGLVRGAHEGQ--G------------AFE-------DPDIIHVDD------------SVDPVRDLEVISAELRLK 137 (374)
Q Consensus 91 ~v~D~~gl~~~~~~~~--~------------~~~-------~~~il~l~~------------~~dP~~~l~ilde~l~~~ 137 (374)
++.|++.++....... . .+. ......+++ ..+| +++++|||++++
T Consensus 502 Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~--~illLDep~saL 579 (1490)
T TIGR01271 502 TIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDA--DLYLLDSPFTHL 579 (1490)
T ss_pred cHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCC--CEEEEeCCcccC
Confidence 7777766542211000 0 000 001112222 4678 999999999999
Q ss_pred cHHHHHHHHHH-HHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 138 DIEFMERRIED-VEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 138 D~~~~~~~~~~-i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
|......+.+. +.... ++.+ |++..+. .||++ .+|++|+++..++.
T Consensus 580 D~~~~~~i~~~~l~~~~-~~~tvilvtH~~~~~~-~ad~i-i~l~~g~i~~~g~~ 631 (1490)
T TIGR01271 580 DVVTEKEIFESCLCKLM-SNKTRILVTSKLEHLK-KADKI-LLLHEGVCYFYGTF 631 (1490)
T ss_pred CHHHHHHHHHHHHHHHh-cCCeEEEEeCChHHHH-hCCEE-EEEECCEEEEEcCH
Confidence 99999988875 44443 4444 9988765 49999 89999998876653
No 411
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.17 E-value=2.6e-11 Score=125.89 Aligned_cols=52 Identities=44% Similarity=0.684 Sum_probs=47.1
Q ss_pred cCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhh
Q 017295 31 GLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (374)
Q Consensus 31 G~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~ 99 (374)
|.||+|||||+|.|+|.+..++|+|++|.+...|.+.++|.. +.+.|+||..
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~-----------------i~lvDtPG~~ 52 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGED-----------------IEIVDLPGIY 52 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeE-----------------EEEEECCCcc
Confidence 899999999999999998888999999999999999887754 6889999985
No 412
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.17 E-value=4.1e-12 Score=144.76 Aligned_cols=151 Identities=15% Similarity=0.201 Sum_probs=105.7
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccc
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFL 90 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~ 90 (374)
+++|+++++ |..++|+|+||||||||+++|+|. ++|++|.|.++|. ..|.+|.......
T Consensus 651 ~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~-----------~~~~~G~i~~~g~------i~yv~Q~~~l~~~ 713 (1522)
T TIGR00957 651 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAE-----------MDKVEGHVHMKGS------VAYVPQQAWIQND 713 (1522)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CccCCcEEEECCE------EEEEcCCccccCC
Confidence 468888875 556999999999999999999999 8899999999872 2466666533345
Q ss_pred hHhhHhhhhccccCCCC--------------CCC-------CCceeEecC------------CCCCchhHHHHHHHHHhh
Q 017295 91 EIHDIAGLVRGAHEGQG--------------AFE-------DPDIIHVDD------------SVDPVRDLEVISAELRLK 137 (374)
Q Consensus 91 ~v~D~~gl~~~~~~~~~--------------~~~-------~~~il~l~~------------~~dP~~~l~ilde~l~~~ 137 (374)
++.|+..++........ .+. ......+++ ..+| ++.++|||++.+
T Consensus 714 Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~--~illLDEp~saL 791 (1522)
T TIGR00957 714 SLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNA--DIYLFDDPLSAV 791 (1522)
T ss_pred cHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCC--CEEEEcCCcccc
Confidence 77777765432110000 000 001112222 4678 999999999999
Q ss_pred cHHHHHHHHHHHHHH--HHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 138 DIEFMERRIEDVEKS--MKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 138 D~~~~~~~~~~i~~~--~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
|....+...+.+... ..++.+ |+...+.. +|++ .+|++|+++..|+.
T Consensus 792 D~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~-~D~i-i~l~~G~i~~~g~~ 845 (1522)
T TIGR00957 792 DAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQ-VDVI-IVMSGGKISEMGSY 845 (1522)
T ss_pred CHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhh-CCEE-EEecCCeEEeeCCH
Confidence 999998888887542 123444 99877655 9999 99999999877654
No 413
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.16 E-value=3.7e-11 Score=122.05 Aligned_cols=58 Identities=29% Similarity=0.367 Sum_probs=49.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhh
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~-~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~ 99 (374)
.+|+|||++|+|||||||.|+|.... ++++|++|.+...+.+.+.|.. +.++|++|+.
T Consensus 39 ~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~-----------------~~l~DT~G~~ 97 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRR-----------------FTVVDTGGWE 97 (472)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcE-----------------EEEEeCCCcC
Confidence 46999999999999999999997654 5899999999988988887754 6788999873
No 414
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.15 E-value=5.1e-12 Score=128.72 Aligned_cols=144 Identities=19% Similarity=0.179 Sum_probs=90.4
Q ss_pred ccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCC-cchhhhhhhccCCCCcccc
Q 017295 15 RPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD-ERFEWLCQLFKPKSAVPAF 89 (374)
Q Consensus 15 ~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g-~~~~~l~~~~~~~~~~~~~ 89 (374)
+.+++++++. .+||||||||+||||||++|+|. ..|.+|.|.+.. ..+.++.|... .+...
T Consensus 335 ~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~-----------~~~~~G~v~~g~~v~igyf~Q~~~---~l~~~ 400 (530)
T COG0488 335 RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGE-----------LGPLSGTVKVGETVKIGYFDQHRD---ELDPD 400 (530)
T ss_pred ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhh-----------cccCCceEEeCCceEEEEEEehhh---hcCcc
Confidence 5788888764 45999999999999999999999 778899998743 33444333210 01111
Q ss_pred chHhhHhhhhcccc--------CCCCCCCC----CceeEecC------------CCCCchhHHHHHHHHHhhcHHHHHHH
Q 017295 90 LEIHDIAGLVRGAH--------EGQGAFED----PDIIHVDD------------SVDPVRDLEVISAELRLKDIEFMERR 145 (374)
Q Consensus 90 ~~v~D~~gl~~~~~--------~~~~~~~~----~~il~l~~------------~~dP~~~l~ilde~l~~~D~~~~~~~ 145 (374)
.++.|.+.-..... .+.-.|.. ..+-.+++ ...| .++++|||++.+|+++++..
T Consensus 401 ~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~p--NvLiLDEPTNhLDi~s~~aL 478 (530)
T COG0488 401 KTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPP--NLLLLDEPTNHLDIESLEAL 478 (530)
T ss_pred CcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCC--CEEEEcCCCccCCHHHHHHH
Confidence 23333322111000 00001111 11222222 4567 99999999999999999887
Q ss_pred HHHHHHHHHccC----ccchHHHHHHHHHHHHHHhC
Q 017295 146 IEDVEKSMKRSN----DKQLKIEHELCQRVKAWLQD 177 (374)
Q Consensus 146 ~~~i~~~~~~~~----~H~~~~~~~~~d~v~~~L~~ 177 (374)
.+.+.... |. +||...+..+++++ ..++.
T Consensus 479 e~aL~~f~--Gtvl~VSHDr~Fl~~va~~i-~~~~~ 511 (530)
T COG0488 479 EEALLDFE--GTVLLVSHDRYFLDRVATRI-WLVED 511 (530)
T ss_pred HHHHHhCC--CeEEEEeCCHHHHHhhcceE-EEEcC
Confidence 77776532 22 19999999999888 55554
No 415
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.15 E-value=1.5e-11 Score=132.58 Aligned_cols=157 Identities=19% Similarity=0.260 Sum_probs=113.8
Q ss_pred ccccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-----h--hcc
Q 017295 13 AERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----Q--LFK 81 (374)
Q Consensus 13 ~~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-----~--~~~ 81 (374)
++.+||+++++. ..+|||||+||||||.+.+|-+. ++|+.|.|.++|.++..+. + ..+
T Consensus 1001 P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRf-----------Ydp~~G~V~IDg~dik~lnl~~LR~~i~lV 1069 (1228)
T KOG0055|consen 1001 PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERF-----------YDPDAGKVKIDGVDIKDLNLKWLRKQIGLV 1069 (1228)
T ss_pred CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHh-----------cCCCCCeEEECCcccccCCHHHHHHhccee
Confidence 467899998864 45999999999999999999999 9999999999998875533 2 467
Q ss_pred CCCCccccchHhhHhhhhc-cccCCCC----------CC----CC-------CceeEecC------------CCCCchhH
Q 017295 82 PKSAVPAFLEIHDIAGLVR-GAHEGQG----------AF----ED-------PDIIHVDD------------SVDPVRDL 127 (374)
Q Consensus 82 ~~~~~~~~~~v~D~~gl~~-~~~~~~~----------~~----~~-------~~il~l~~------------~~dP~~~l 127 (374)
.|++.....++.|+..++. ..+..+- .| .+ +.=..+++ ..|| .+
T Consensus 1070 sQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnP--kI 1147 (1228)
T KOG0055|consen 1070 SQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNP--KI 1147 (1228)
T ss_pred ccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCC--Ce
Confidence 8888666678899888761 1110000 00 00 00011222 4689 99
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 128 EVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 128 ~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
++|||.++.+|.++-.-..+.+.+.. .+.| |.+.-+. -||.| .++++|+++..|+
T Consensus 1148 LLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLSTIq-naD~I-~Vi~~G~VvE~Gt 1207 (1228)
T KOG0055|consen 1148 LLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLSTIQ-NADVI-AVLKNGKVVEQGT 1207 (1228)
T ss_pred eeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchhhhh-cCCEE-EEEECCEEEeccc
Confidence 99999999999997665555665544 5554 8887644 48888 9999999998875
No 416
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.13 E-value=1.2e-10 Score=114.37 Aligned_cols=58 Identities=22% Similarity=0.312 Sum_probs=50.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhh
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~ 99 (374)
.+..|+|.||+|||+|+|.++...+++.+|||||..-..|.+.+.-. ..++.|+||+.
T Consensus 169 rTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYl-----------------rwQViDTPGIL 226 (620)
T KOG1490|consen 169 RTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYL-----------------RWQVIDTPGIL 226 (620)
T ss_pred CeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhhee-----------------eeeecCCcccc
Confidence 45899999999999999999999999999999999888887765422 27899999984
No 417
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.13 E-value=1.1e-10 Score=126.36 Aligned_cols=175 Identities=14% Similarity=0.140 Sum_probs=119.8
Q ss_pred cccccccccc----CCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhh--hh--hhccCCC
Q 017295 13 AERPILGRFS----SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW--LC--QLFKPKS 84 (374)
Q Consensus 13 ~~~~vL~~i~----~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~--l~--~~~~~~~ 84 (374)
+.+++|++|+ +|.-.||+|.+|||||||||+|+|.. |.--.+|.|.++|.+..+ .+ .+|..|.
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~---------t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~ 872 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRK---------TGGYIEGDILISGFPKDQETFARVSGYVEQQ 872 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCc---------ccceEEeEEEECCeeCchhhhccccceeecc
Confidence 5678899886 56669999999999999999999983 345678999999988763 11 1455554
Q ss_pred C-ccccchHhhHhhhhccccCCCC-----------------C---------------C----CCCceeEecCCCCCchhH
Q 017295 85 A-VPAFLEIHDIAGLVRGAHEGQG-----------------A---------------F----EDPDIIHVDDSVDPVRDL 127 (374)
Q Consensus 85 ~-~~~~~~v~D~~gl~~~~~~~~~-----------------~---------------~----~~~~il~l~~~~dP~~~l 127 (374)
. ..+.++|.+.+.+......... . + +...-+-|.-..+| +-+
T Consensus 873 DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P-~~i 951 (1391)
T KOG0065|consen 873 DIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANP-SSI 951 (1391)
T ss_pred cccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCC-cee
Confidence 3 3355677766655322111000 0 0 01111222225577 246
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cch-HHHHHHHHHHHHHH-hCCCceeccCCChhHHHHHHhcc
Q 017295 128 EVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQL-KIEHELCQRVKAWL-QDGKDVRLGDWKAADIEILNTFQ 198 (374)
Q Consensus 128 ~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~-~~~~~~~d~v~~~L-~~G~iv~~~~~~~~~~~~l~~~~ 198 (374)
+.||||++++|....-.++..++++++.|.+ |.. ..+.+..|++ .+| +.|+.+..|++.+.-...++.+.
T Consensus 952 lFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~L-LLLkrGGqtVY~G~lG~~s~~li~YFe 1028 (1391)
T KOG0065|consen 952 LFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDEL-LLLKRGGQTVYFGPLGENSSKLIEYFE 1028 (1391)
T ss_pred EEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHH-HHHhcCCeEEEecCcccccHHHHHHHH
Confidence 7899999999999999999999999988765 854 4566778999 666 55678888988876555555554
No 418
>PRK04213 GTP-binding protein; Provisional
Probab=99.12 E-value=4.3e-10 Score=100.92 Aligned_cols=54 Identities=33% Similarity=0.398 Sum_probs=43.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhh
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl 98 (374)
..+|+++|++|||||||+|.|+|....++.+|++|..+.. +.+. .+.++|++|+
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~--~~~~-------------------~~~l~Dt~G~ 62 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNH--YDWG-------------------DFILTDLPGF 62 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceE--Eeec-------------------ceEEEeCCcc
Confidence 3579999999999999999999988777889999987653 2222 1688999987
No 419
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.11 E-value=7.7e-11 Score=102.15 Aligned_cols=56 Identities=27% Similarity=0.372 Sum_probs=39.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCC----CCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhh
Q 017295 26 KIGIVGLPNVGKSTLFNTLTKLAIPA----ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Ltg~~~~~----s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl 98 (374)
.|+++|++|||||||++.|++...+. ...+.+|+..+.+.+.+++.. +.+.|++|.
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-----------------~~l~Dt~G~ 60 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNAR-----------------LKFWDLGGQ 60 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEE-----------------EEEEECCCC
Confidence 37899999999999999999864432 223355666666677665433 567777765
No 420
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.11 E-value=3.9e-10 Score=97.74 Aligned_cols=49 Identities=12% Similarity=0.068 Sum_probs=32.6
Q ss_pred cCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCC
Q 017295 202 AKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADM 253 (374)
Q Consensus 202 ~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l 253 (374)
..|+++|+||.|... ......+..+++.... +.+++++||+.+.++.++
T Consensus 107 ~~~~iiv~nK~Dl~~--~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~~ 155 (166)
T cd01869 107 NVNKLLVGNKCDLTD--KRVVDYSEAQEFADEL-GIPFLETSAKNATNVEQA 155 (166)
T ss_pred CCcEEEEEEChhccc--ccCCCHHHHHHHHHHc-CCeEEEEECCCCcCHHHH
Confidence 589999999997422 1112234455555443 568999999998776644
No 421
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.10 E-value=4.4e-10 Score=97.93 Aligned_cols=46 Identities=24% Similarity=0.202 Sum_probs=31.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCC
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD 70 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g 70 (374)
.++++||++|||||||++.+++........|..+.+.....+.+++
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~ 50 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDG 50 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECC
Confidence 5799999999999999999998765443334333444444455554
No 422
>PTZ00243 ABC transporter; Provisional
Probab=99.10 E-value=1.4e-11 Score=140.27 Aligned_cols=152 Identities=18% Similarity=0.159 Sum_probs=101.6
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCcccc
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAF 89 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~ 89 (374)
++.+|+++++ |..++|+|+||||||||+++|+|. ++|+.|.|.+.+ . ..|.+|......
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~-----------~~~~~G~i~~~~-~-----i~yv~Q~~~l~~ 734 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQ-----------FEISEGRVWAER-S-----IAYVPQQAWIMN 734 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcC-----------CCCCCcEEEECC-e-----EEEEeCCCccCC
Confidence 3568998875 456999999999999999999999 889999998742 1 245566542223
Q ss_pred chHhhHhhhhccccC---------------------CCCCCCCCceeEecC------------CCCCchhHHHHHHHHHh
Q 017295 90 LEIHDIAGLVRGAHE---------------------GQGAFEDPDIIHVDD------------SVDPVRDLEVISAELRL 136 (374)
Q Consensus 90 ~~v~D~~gl~~~~~~---------------------~~~~~~~~~il~l~~------------~~dP~~~l~ilde~l~~ 136 (374)
.++.|++.+...... |...........+++ ..+| +++++|||++.
T Consensus 735 ~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p--~illLDEP~sa 812 (1560)
T PTZ00243 735 ATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANR--DVYLLDDPLSA 812 (1560)
T ss_pred CcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCC--CEEEEcCcccc
Confidence 566666655321100 000000111112222 4678 99999999999
Q ss_pred hcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 137 KDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 137 ~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
+|....+.....+.....++.+ |++..+ ..+|++ .+|++|+++..|+.
T Consensus 813 LD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~-~~ad~i-i~l~~G~i~~~G~~ 865 (1560)
T PTZ00243 813 LDAHVGERVVEECFLGALAGKTRVLATHQVHVV-PRADYV-VALGDGRVEFSGSS 865 (1560)
T ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHH-HhCCEE-EEEECCEEEEecCH
Confidence 9998877776643221223444 998876 569999 99999999877654
No 423
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.09 E-value=4.6e-10 Score=96.63 Aligned_cols=45 Identities=20% Similarity=0.289 Sum_probs=30.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCC
Q 017295 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD 70 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g 70 (374)
+|+++|++|||||||++.+++........|..+.+...-.+.+++
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDG 46 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECC
Confidence 689999999999999999998865434444444333333444444
No 424
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.09 E-value=8e-10 Score=99.47 Aligned_cols=50 Identities=10% Similarity=0.074 Sum_probs=32.3
Q ss_pred cCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCC
Q 017295 202 AKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADM 253 (374)
Q Consensus 202 ~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l 253 (374)
..|+++|+||+|... ......+.++++..+..+.+++++||+.+.++.+|
T Consensus 116 ~~piiivgNK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~l 165 (198)
T cd04142 116 EPPIVVVGNKRDQQR--HRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLL 165 (198)
T ss_pred CCCEEEEEECccccc--cccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHH
Confidence 589999999997522 11112233444433222567899999999887655
No 425
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.09 E-value=7.2e-11 Score=101.65 Aligned_cols=62 Identities=16% Similarity=0.261 Sum_probs=52.5
Q ss_pred CCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccC------ccchHHHHHHHHHHHHHHhCCCceecc
Q 017295 120 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSN------DKQLKIEHELCQRVKAWLQDGKDVRLG 184 (374)
Q Consensus 120 ~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~------~H~~~~~~~~~d~v~~~L~~G~iv~~~ 184 (374)
...| .+.++|||+.++|.....+.++.++.+...-+ +|++..+.-++++. .+|++|+++..|
T Consensus 167 Vt~P--rLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rl-mvmk~g~vve~G 234 (258)
T COG4107 167 VTRP--RLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRL-MVMKQGQVVESG 234 (258)
T ss_pred ccCC--ceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcc-eeecCCCEeccc
Confidence 3467 88899999999999999999999988775433 39999988889999 999999988765
No 426
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.08 E-value=6.5e-10 Score=96.71 Aligned_cols=49 Identities=14% Similarity=0.085 Sum_probs=33.0
Q ss_pred cCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCC
Q 017295 202 AKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADM 253 (374)
Q Consensus 202 ~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l 253 (374)
..|+++|.||+|.. .......+...++.+.. +.+++.+||+.+.++.++
T Consensus 108 ~~p~iiv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~~ 156 (167)
T cd01867 108 DVERMLVGNKCDME--EKRVVSKEEGEALADEY-GIKFLETSAKANINVEEA 156 (167)
T ss_pred CCcEEEEEECcccc--cccCCCHHHHHHHHHHc-CCEEEEEeCCCCCCHHHH
Confidence 58999999999742 21222344555555443 568999999998776644
No 427
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.07 E-value=9.9e-11 Score=124.53 Aligned_cols=58 Identities=29% Similarity=0.328 Sum_probs=49.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhh
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~-~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~ 99 (374)
..|+|+|.||+|||||||.|+|.... ++++|++|.+...+.+.+++.. +.++|++|+.
T Consensus 276 ~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~-----------------~~liDT~G~~ 334 (712)
T PRK09518 276 GVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTD-----------------FKLVDTGGWE 334 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEE-----------------EEEEeCCCcC
Confidence 45999999999999999999998764 4899999999888888777654 6789999974
No 428
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.07 E-value=2.5e-11 Score=133.51 Aligned_cols=152 Identities=20% Similarity=0.210 Sum_probs=101.9
Q ss_pred ccccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhh-------hcc
Q 017295 13 AERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFK 81 (374)
Q Consensus 13 ~~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~-------~~~ 81 (374)
+...||++++. +++|||||+.|||||||+++|-++ .+|..|.|.++|.++..+.- ...
T Consensus 1151 ~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl-----------~e~~~G~I~IDgvdI~~igL~dLRsrlsII 1219 (1381)
T KOG0054|consen 1151 NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRL-----------VEPAEGEILIDGVDISKIGLHDLRSRLSII 1219 (1381)
T ss_pred CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHh-----------cCccCCeEEEcCeecccccHHHHHhcCeee
Confidence 35689999875 567999999999999999999999 89999999999998765332 355
Q ss_pred CCCCccccchHhhH------------------hhhh---c----ccc-----CCCC---------CCCCCceeEecCCCC
Q 017295 82 PKSAVPAFLEIHDI------------------AGLV---R----GAH-----EGQG---------AFEDPDIIHVDDSVD 122 (374)
Q Consensus 82 ~~~~~~~~~~v~D~------------------~gl~---~----~~~-----~~~~---------~~~~~~il~l~~~~d 122 (374)
||+++...-+++.+ ..+- . +.+ .|.. |+.... ..+
T Consensus 1220 PQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARAL------Lr~ 1293 (1381)
T KOG0054|consen 1220 PQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARAL------LRK 1293 (1381)
T ss_pred CCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHH------hcc
Confidence 66653322222222 1111 0 000 0000 000000 123
Q ss_pred CchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 123 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 123 P~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
. .++++||.++..|.++-.-+.+.|++.- +++| |.+.-+.. |||| .+|++|+++..+.+
T Consensus 1294 s--kILvLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHRl~TVmd-~DrV-lVld~G~v~EfdsP 1357 (1381)
T KOG0054|consen 1294 S--KILVLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHRLNTVMD-SDRV-LVLDAGRVVEFDSP 1357 (1381)
T ss_pred C--CEEEEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeeccchhhh-cCeE-EEeeCCeEeecCCh
Confidence 3 7888999999999987666666666544 4565 88877665 8999 99999999877644
No 429
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.07 E-value=1.8e-10 Score=98.61 Aligned_cols=58 Identities=33% Similarity=0.329 Sum_probs=43.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhh
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~-~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~ 99 (374)
.+++++|++|||||||+|.|+|.... +++.+.+|.....+.....+. .+.++|++|+.
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~liDtpG~~ 62 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDA-----------------QIIFVDTPGIH 62 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCe-----------------EEEEEECCCCC
Confidence 46999999999999999999998764 366777776666655443322 26788988874
No 430
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.06 E-value=6.3e-10 Score=95.89 Aligned_cols=45 Identities=20% Similarity=0.230 Sum_probs=30.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCC
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD 70 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g 70 (374)
.+++++|++|+|||||++.+.+... .++++.|+.......+.+++
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~ 47 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYF-VTDYDPTIEDSYTKQCEIDG 47 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC-CcccCCCccceEEEEEEECC
Confidence 5799999999999999999987632 35555555433333334444
No 431
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.06 E-value=5.8e-10 Score=112.21 Aligned_cols=58 Identities=33% Similarity=0.370 Sum_probs=50.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhh
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~-~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~ 99 (374)
.+|+|+|.+|+|||||+|.|+|.... ++++|++|.+...+.+.++|.. +.++|++|+.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~-----------------~~liDT~G~~ 60 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGRE-----------------FILIDTGGIE 60 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcE-----------------EEEEECCCCC
Confidence 36899999999999999999998764 5899999999999999888744 7899999884
No 432
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.06 E-value=7e-10 Score=96.36 Aligned_cols=50 Identities=22% Similarity=0.227 Sum_probs=34.3
Q ss_pred cCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCC
Q 017295 202 AKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADM 253 (374)
Q Consensus 202 ~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l 253 (374)
.+|+++|+||+|... ......+.++.+.+.....+++.+||+.+.++.++
T Consensus 109 ~~p~ilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 158 (172)
T cd01862 109 NFPFVVLGNKIDLEE--KRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQA 158 (172)
T ss_pred CceEEEEEECccccc--ccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHH
Confidence 689999999997521 12223455666665543368999999998876544
No 433
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.06 E-value=7.3e-10 Score=95.56 Aligned_cols=49 Identities=14% Similarity=0.127 Sum_probs=32.0
Q ss_pred cCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCC
Q 017295 202 AKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADM 253 (374)
Q Consensus 202 ~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l 253 (374)
..|+++|+||.|... ......+..+++.... +.+++.+||+.+.++.++
T Consensus 110 ~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l 158 (168)
T cd04119 110 NIVVVVCANKIDLTK--HRAVSEDEGRLWAESK-GFKYFETSACTGEGVNEM 158 (168)
T ss_pred CceEEEEEEchhccc--ccccCHHHHHHHHHHc-CCeEEEEECCCCCCHHHH
Confidence 689999999997421 1112234444444443 467999999998776544
No 434
>PLN03108 Rab family protein; Provisional
Probab=99.06 E-value=9.3e-10 Score=99.88 Aligned_cols=48 Identities=23% Similarity=0.210 Sum_probs=32.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcc
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~ 72 (374)
.++.|+|+||||||||++.+++........|..+.+...+.+.+++..
T Consensus 7 ~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~ 54 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKP 54 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEE
Confidence 579999999999999999999875433333322222334566666543
No 435
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.06 E-value=1.1e-09 Score=97.66 Aligned_cols=58 Identities=26% Similarity=0.253 Sum_probs=39.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCcee-EEEeCCcchhhhhhhccCCCCccccchHhhHhhh
Q 017295 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEA-RVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G-~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl 98 (374)
+|+++|++|||||||++.+++......+|+.|+...... .+.+++..+ .++++|++|-
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~---------------~~~i~Dt~G~ 60 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKV---------------KLQIWDTAGQ 60 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEE---------------EEEEEeCCCc
Confidence 689999999999999999998766555666555433333 345555321 2567777774
No 436
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.06 E-value=2.8e-11 Score=127.74 Aligned_cols=140 Identities=11% Similarity=0.131 Sum_probs=90.9
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCcccc
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAF 89 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~ 89 (374)
++.+|+++++ |..++|+|+||||||||+++|+|. .+|+.|.+.+++.. ...|.+|+.....
T Consensus 464 ~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl-----------~~~~~G~i~~~~~~----~i~~v~Q~~~l~~ 528 (659)
T TIGR00954 464 GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGEL-----------WPVYGGRLTKPAKG----KLFYVPQRPYMTL 528 (659)
T ss_pred CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCeEeecCCC----cEEEECCCCCCCC
Confidence 3468888875 556999999999999999999999 77899999876421 2245666652222
Q ss_pred chHhhHhhhhcccc----CCCC-----------CC---CCC---------ceeEecC------------CCCCchhHHHH
Q 017295 90 LEIHDIAGLVRGAH----EGQG-----------AF---EDP---------DIIHVDD------------SVDPVRDLEVI 130 (374)
Q Consensus 90 ~~v~D~~gl~~~~~----~~~~-----------~~---~~~---------~il~l~~------------~~dP~~~l~il 130 (374)
.++.|++.+..... .+.. .+ .+. ..-.+++ ..+| +++++
T Consensus 529 ~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p--~illL 606 (659)
T TIGR00954 529 GTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKP--QFAIL 606 (659)
T ss_pred cCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCC--CEEEE
Confidence 36666665432100 0000 00 000 0012232 5689 99999
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHH
Q 017295 131 SAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWL 175 (374)
Q Consensus 131 de~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L 175 (374)
|||++++|........+.+.+ .+.+ |+...+ ..||++ .+|
T Consensus 607 DEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~~~-~~~d~i-l~l 651 (659)
T TIGR00954 607 DECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKSLW-KYHEYL-LYM 651 (659)
T ss_pred eCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchHHH-HhCCEE-EEE
Confidence 999999999988877776654 2443 887764 567777 444
No 437
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.06 E-value=8.3e-10 Score=95.03 Aligned_cols=45 Identities=18% Similarity=0.276 Sum_probs=29.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCC
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD 70 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g 70 (374)
.+|+++|.+|||||||++.+.+... ..+|+-|+.+...-.+.+++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~ 46 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYRKQIEVDG 46 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CcccCCchhhhEEEEEEECC
Confidence 4789999999999999999986532 23444444333333444554
No 438
>PLN03073 ABC transporter F family; Provisional
Probab=99.06 E-value=2e-11 Score=129.28 Aligned_cols=61 Identities=16% Similarity=0.171 Sum_probs=51.2
Q ss_pred CCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCce-eccCC
Q 017295 120 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDV-RLGDW 186 (374)
Q Consensus 120 ~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv-~~~~~ 186 (374)
..+| +++++|||++.+|+.....+.+.+... +.+ |+...+..+|+++ .+|++|++. ..+++
T Consensus 360 ~~~p--~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tviivsHd~~~l~~~~d~i-~~l~~g~i~~~~g~~ 426 (718)
T PLN03073 360 FIEP--DLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFIVVSHAREFLNTVVTDI-LHLHGQKLVTYKGDY 426 (718)
T ss_pred hcCC--CEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEEEEECCHHHHHHhCCEE-EEEECCEEEEeCCCH
Confidence 5688 999999999999999999888888764 333 9999999999999 999999986 34444
No 439
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.06 E-value=1e-09 Score=95.30 Aligned_cols=49 Identities=10% Similarity=0.060 Sum_probs=32.0
Q ss_pred cCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCC
Q 017295 202 AKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADM 253 (374)
Q Consensus 202 ~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l 253 (374)
..|+++|+||+|... ......+..+++.... +.+++.+||+.+.++.+|
T Consensus 106 ~~piivv~nK~Dl~~--~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gv~~l 154 (165)
T cd01865 106 NAQVILVGNKCDMED--ERVVSSERGRQLADQL-GFEFFEASAKENINVKQV 154 (165)
T ss_pred CCCEEEEEECcccCc--ccccCHHHHHHHHHHc-CCEEEEEECCCCCCHHHH
Confidence 579999999997421 1112234444444433 557999999998876655
No 440
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=99.06 E-value=2.2e-10 Score=82.76 Aligned_cols=59 Identities=17% Similarity=0.228 Sum_probs=50.2
Q ss_pred eeeeccCCCCeeeEEecCCCChhHhhhhcchhhhcceEEEEEecchhhhhcCChHHHhhcCcccccCCcceecCCCEEEE
Q 017295 285 IYFFTAGPDEVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVMKFDDLKELGSEPAVKAAGKYKQEGKTYVVQDGDIIFF 364 (374)
Q Consensus 285 i~~ft~~~~e~~~~~i~~gsta~~~a~~IHsd~~~~f~~A~v~~~~d~~~~~~~~~~~~~g~~~~~g~dy~~~dgDii~~ 364 (374)
|++||. | .+.--+++|+|+.|+|..||+++++.|+.|.|++ |+++.+|.++|||+|+|
T Consensus 1 I~v~lp--d-G~~~~~~~g~T~~d~A~~I~~~l~~~~~~A~Vng-------------------~~vdl~~~L~~~d~v~i 58 (60)
T PF02824_consen 1 IRVYLP--D-GSIKELPEGSTVLDVAYSIHSSLAKRAVAAKVNG-------------------QLVDLDHPLEDGDVVEI 58 (60)
T ss_dssp EEEEET--T-SCEEEEETTBBHHHHHHHHSHHHHHCEEEEEETT-------------------EEEETTSBB-SSEEEEE
T ss_pred CEEECC--C-CCeeeCCCCCCHHHHHHHHCHHHHhheeEEEEcC-------------------EECCCCCCcCCCCEEEE
Confidence 578882 3 2334499999999999999999999999999986 88999999999999998
Q ss_pred E
Q 017295 365 K 365 (374)
Q Consensus 365 ~ 365 (374)
.
T Consensus 59 i 59 (60)
T PF02824_consen 59 I 59 (60)
T ss_dssp E
T ss_pred E
Confidence 4
No 441
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.05 E-value=3.1e-10 Score=101.15 Aligned_cols=55 Identities=33% Similarity=0.326 Sum_probs=41.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCC--CCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhh
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLA--IPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~--~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~ 99 (374)
..|+|+|.+|||||||+|.|++.. ..+++.|++|..+....+ + ..+.++|++|+.
T Consensus 25 ~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~-----------------~~l~l~DtpG~~ 81 (196)
T PRK00454 25 PEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---N-----------------DKLRLVDLPGYG 81 (196)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---C-----------------CeEEEeCCCCCC
Confidence 569999999999999999999964 355788888865443221 1 127889999974
No 442
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.05 E-value=1e-09 Score=94.41 Aligned_cols=49 Identities=10% Similarity=0.055 Sum_probs=33.2
Q ss_pred ccCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCC
Q 017295 201 TAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADM 253 (374)
Q Consensus 201 ~~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l 253 (374)
...|.++|+||+|... .....+...++.... +.+++++||+.+.++.++
T Consensus 105 ~~~~~~iv~nK~D~~~---~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~~ 153 (161)
T cd01863 105 NDIVKMLVGNKIDKEN---REVTREEGLKFARKH-NMLFIETSAKTRDGVQQA 153 (161)
T ss_pred CCCcEEEEEECCcccc---cccCHHHHHHHHHHc-CCEEEEEecCCCCCHHHH
Confidence 3689999999997531 122344555555444 668999999998766544
No 443
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=7.7e-11 Score=113.85 Aligned_cols=156 Identities=17% Similarity=0.211 Sum_probs=107.7
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhh-------hccC
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKP 82 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~-------~~~~ 82 (374)
.+++|+++++ |.++++||++|+||||+++.|... +++++|.|.++|++++...+ +.+|
T Consensus 275 ~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRF-----------yD~~sG~I~id~qdir~vtq~slR~aIg~VP 343 (497)
T COG5265 275 RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRF-----------YDVNSGSITIDGQDIRDVTQQSLRRAIGIVP 343 (497)
T ss_pred cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHH-----------hCCcCceEEEcchhHHHhHHHHHHHHhCcCc
Confidence 5678888876 556999999999999999999999 99999999999999876444 5778
Q ss_pred CCCccccchHhhHhhhhccccCCCC-------------------CC---CCCceeEecC------------CCCCchhHH
Q 017295 83 KSAVPAFLEIHDIAGLVRGAHEGQG-------------------AF---EDPDIIHVDD------------SVDPVRDLE 128 (374)
Q Consensus 83 ~~~~~~~~~v~D~~gl~~~~~~~~~-------------------~~---~~~~il~l~~------------~~dP~~~l~ 128 (374)
|+.+...-++.-+...++....... .+ -...-+.+++ ..+| .++
T Consensus 344 QDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p--~il 421 (497)
T COG5265 344 QDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNP--PIL 421 (497)
T ss_pred ccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCC--CEE
Confidence 8874433344444433321111000 00 0000111222 3478 899
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 129 VISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 129 ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
++||.++.+|-.+-..+...+.+.. .+.| |.+.-+.. +|.+ .+|++|+++..|.
T Consensus 422 ~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlsti~~-adei-ivl~~g~i~erg~ 480 (497)
T COG5265 422 ILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLSTIID-ADEI-IVLDNGRIVERGT 480 (497)
T ss_pred EEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhhccC-CceE-EEeeCCEEEecCc
Confidence 9999999999998777777777665 5544 87765433 6888 8999999998764
No 444
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.04 E-value=1.9e-09 Score=91.81 Aligned_cols=55 Identities=36% Similarity=0.403 Sum_probs=45.7
Q ss_pred EEEcCCCCcHHHHHHHHHcCCC-CCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhh
Q 017295 28 GIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (374)
Q Consensus 28 gLvG~nGaGKSTL~n~Ltg~~~-~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~ 99 (374)
+++|.+|+|||||+|.|++... .++++|++|.+.....+.+.+.. +.++|+||+.
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-----------------~~i~DtpG~~ 56 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGRE-----------------FILIDTGGIE 56 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeE-----------------EEEEECCCCC
Confidence 5899999999999999999865 35889999988887777776543 6889999884
No 445
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.04 E-value=9.1e-10 Score=95.07 Aligned_cols=49 Identities=12% Similarity=0.116 Sum_probs=31.9
Q ss_pred cCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCC
Q 017295 202 AKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADM 253 (374)
Q Consensus 202 ~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l 253 (374)
..|+++|.||+|... ......+...++.... +.+++++||+.+.++.++
T Consensus 105 ~~pii~v~nK~Dl~~--~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~l 153 (164)
T smart00173 105 DVPIVLVGNKCDLES--ERVVSTEEGKELARQW-GCPFLETSAKERVNVDEA 153 (164)
T ss_pred CCCEEEEEECccccc--cceEcHHHHHHHHHHc-CCEEEEeecCCCCCHHHH
Confidence 689999999997422 1111223444444443 568999999998776544
No 446
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.04 E-value=1.4e-10 Score=111.52 Aligned_cols=164 Identities=15% Similarity=0.153 Sum_probs=111.0
Q ss_pred ccccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhh----------
Q 017295 13 AERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ---------- 78 (374)
Q Consensus 13 ~~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~---------- 78 (374)
+...+++++++ |+++||||.+|||||-..+.++++.+ +|.+ -.-+|.|.++|.++-..+.
T Consensus 21 ~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp----~~~~--~~~sg~i~f~G~dll~~se~~lr~iRG~~ 94 (534)
T COG4172 21 GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLP----SPAA--AHPSGSILFDGEDLLAASERQLRGVRGNK 94 (534)
T ss_pred cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcC----CCcc--cCccceeEEcChhhhcCCHHHHhhhcccc
Confidence 46678888876 56699999999999999999999854 1111 1236899999988643321
Q ss_pred -hccCCCC---ccccc----hHhhHhhhhccccCCCC-----------------CCCCCceeEecC------------CC
Q 017295 79 -LFKPKSA---VPAFL----EIHDIAGLVRGAHEGQG-----------------AFEDPDIIHVDD------------SV 121 (374)
Q Consensus 79 -~~~~~~~---~~~~~----~v~D~~gl~~~~~~~~~-----------------~~~~~~il~l~~------------~~ 121 (374)
.+..|+. +.+-. ++.+...+.++.+.... ...+...-.+++ +.
T Consensus 95 I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan 174 (534)
T COG4172 95 IGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALAN 174 (534)
T ss_pred eEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcC
Confidence 1223332 22211 33444444333221100 000111112222 67
Q ss_pred CCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc------cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 122 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND------KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 122 dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~------H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+| ++++-|||+..+|.....++++.++++..+.+. ||+..+..++|+| .+|..|+++..+.
T Consensus 175 ~P--~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV-~VM~~G~ivE~~~ 241 (534)
T COG4172 175 EP--DLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRV-YVMQHGEIVETGT 241 (534)
T ss_pred CC--CeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhE-EEEeccEEeecCc
Confidence 89 999999999999999999999999988866443 9999999999999 9999999987654
No 447
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.04 E-value=9.8e-10 Score=94.18 Aligned_cols=49 Identities=12% Similarity=0.082 Sum_probs=32.5
Q ss_pred ccCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCC
Q 017295 201 TAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADM 253 (374)
Q Consensus 201 ~~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l 253 (374)
...|+++|+||+|... .....+.+.++.+.. +.+++++||+.+.++.++
T Consensus 105 ~~~piivv~nK~Dl~~---~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l 153 (162)
T cd04138 105 DDVPMVLVGNKCDLAA---RTVSSRQGQDLAKSY-GIPYIETSAKTRQGVEEA 153 (162)
T ss_pred CCCCEEEEEECccccc---ceecHHHHHHHHHHh-CCeEEEecCCCCCCHHHH
Confidence 3689999999997421 122334455554433 567999999998776544
No 448
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.03 E-value=1.2e-09 Score=98.21 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=21.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCC
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLA 48 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~ 48 (374)
.+|+|+|+||||||||+|+|+|..
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~ 25 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVG 25 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccC
Confidence 468999999999999999999973
No 449
>PLN03130 ABC transporter C family member; Provisional
Probab=99.03 E-value=3.8e-11 Score=137.16 Aligned_cols=151 Identities=17% Similarity=0.243 Sum_probs=104.0
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCce-eEEEeCCcchhhhhhhccCCCCcccc
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNE-ARVNIPDERFEWLCQLFKPKSAVPAF 89 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~-G~i~~~g~~~~~l~~~~~~~~~~~~~ 89 (374)
+++|++++. |..++|+|++|||||||+++|+|. ++|.+ |.|.+.+. ..|.+|.....+
T Consensus 630 ~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~-----------~~~~~GG~I~l~~~------Iayv~Q~p~Lfn 692 (1622)
T PLN03130 630 RPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGE-----------LPPRSDASVVIRGT------VAYVPQVSWIFN 692 (1622)
T ss_pred CceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHh-----------hccCCCceEEEcCe------EEEEcCccccCC
Confidence 568999886 455999999999999999999999 88999 89986542 257777764444
Q ss_pred chHhhHhhhhccccCCCC-------C-------CCC--Cce-----eEecC------------CCCCchhHHHHHHHHHh
Q 017295 90 LEIHDIAGLVRGAHEGQG-------A-------FED--PDI-----IHVDD------------SVDPVRDLEVISAELRL 136 (374)
Q Consensus 90 ~~v~D~~gl~~~~~~~~~-------~-------~~~--~~i-----l~l~~------------~~dP~~~l~ilde~l~~ 136 (374)
-++.|+.-++.......- + +.+ +.. ..+++ ..+| +++++|||++.
T Consensus 693 gTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~--~IlLLDEptSA 770 (1622)
T PLN03130 693 ATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNS--DVYIFDDPLSA 770 (1622)
T ss_pred CCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCC--CEEEECCCccc
Confidence 677777776543211000 0 000 000 11222 4578 99999999999
Q ss_pred hcHHHHHHHHHH-HHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCCC
Q 017295 137 KDIEFMERRIED-VEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 187 (374)
Q Consensus 137 ~D~~~~~~~~~~-i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~~ 187 (374)
+|....+.+.+. +.... +++| |.+.. ...+|+| .+|++|+++..|+.+
T Consensus 771 LD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~~-l~~aD~I-i~L~~G~i~e~Gt~~ 824 (1622)
T PLN03130 771 LDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLHF-LSQVDRI-ILVHEGMIKEEGTYE 824 (1622)
T ss_pred cCHHHHHHHHHHHhhHHh-cCCEEEEEECCHhH-HHhCCEE-EEEeCCEEEEeCCHH
Confidence 999877766554 33332 4444 98864 5668999 899999998877543
No 450
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.01 E-value=1.4e-09 Score=96.66 Aligned_cols=46 Identities=28% Similarity=0.412 Sum_probs=35.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcc
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~ 72 (374)
..+++|+|++|||||||++.|++.... ...+|..|+.+.+.+++.+
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~~~---~~~~T~~~~~~~i~~~~~~ 64 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDRLA---QHVPTLHPTSEELTIGNIK 64 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCc---ccCCccCcceEEEEECCEE
Confidence 456999999999999999999986542 2344677888888877643
No 451
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.00 E-value=2.5e-10 Score=93.48 Aligned_cols=58 Identities=33% Similarity=0.535 Sum_probs=50.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhc
Q 017295 26 KIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Ltg~~~-~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~ 100 (374)
+|+|+|++|||||||+|+|+|.+. .++++|++|..+..+.+.+++.. +.++|+||+..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~-----------------~~~vDtpG~~~ 59 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKK-----------------FILVDTPGIND 59 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEE-----------------EEEEESSSCSS
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceee-----------------EEEEeCCCCcc
Confidence 489999999999999999999754 56999999999988888887654 57999999854
No 452
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.00 E-value=2.6e-09 Score=96.11 Aligned_cols=51 Identities=16% Similarity=0.123 Sum_probs=35.2
Q ss_pred ccCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCC
Q 017295 201 TAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADM 253 (374)
Q Consensus 201 ~~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l 253 (374)
...|+|+|+||.|... ......+.++++...+...+++.+||+.+.++.++
T Consensus 109 ~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~ 159 (201)
T cd04107 109 EPIPCLLLANKCDLKK--RLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEA 159 (201)
T ss_pred CCCcEEEEEECCCccc--ccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHH
Confidence 3689999999997421 12234556777766553257999999998877644
No 453
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.00 E-value=9.7e-10 Score=93.98 Aligned_cols=44 Identities=18% Similarity=0.228 Sum_probs=33.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCC
Q 017295 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD 70 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g 70 (374)
+|+++|++|||||||++.+++.. -.+.++.+|.+.....+.+.+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~ 44 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT-FVEEYDPTIEDSYRKTIVVDG 44 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC-CCcCcCCChhHeEEEEEEECC
Confidence 47999999999999999999875 456777777665555555554
No 454
>PLN03232 ABC transporter C family member; Provisional
Probab=99.00 E-value=6.6e-11 Score=134.81 Aligned_cols=151 Identities=15% Similarity=0.193 Sum_probs=101.5
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEE-eCCcchhhhhhhccCCCCcccc
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVN-IPDERFEWLCQLFKPKSAVPAF 89 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~-~~g~~~~~l~~~~~~~~~~~~~ 89 (374)
+++|+++++ |..++|+|++|||||||+++|+|. .+|++|.+. +.+ ...|.+|.....+
T Consensus 630 ~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~-----------~~~~~G~i~~~~~------~Iayv~Q~p~Lf~ 692 (1495)
T PLN03232 630 KPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGE-----------LSHAETSSVVIRG------SVAYVPQVSWIFN 692 (1495)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-----------CcccCCCEEEecC------cEEEEcCcccccc
Confidence 568999886 456999999999999999999999 889887553 222 1246777764444
Q ss_pred chHhhHhhhhccccCCCC-------C-------CCC--Cce-----eEecC------------CCCCchhHHHHHHHHHh
Q 017295 90 LEIHDIAGLVRGAHEGQG-------A-------FED--PDI-----IHVDD------------SVDPVRDLEVISAELRL 136 (374)
Q Consensus 90 ~~v~D~~gl~~~~~~~~~-------~-------~~~--~~i-----l~l~~------------~~dP~~~l~ilde~l~~ 136 (374)
-++.|+.-++.......- + +.+ +.. ..+++ ..+| +++++|||++.
T Consensus 693 gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~--~IlLLDEptSa 770 (1495)
T PLN03232 693 ATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNS--DIYIFDDPLSA 770 (1495)
T ss_pred ccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCC--CEEEEcCCccc
Confidence 577777776542211000 0 000 000 11222 4578 99999999999
Q ss_pred hcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 137 KDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 137 ~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
+|....+.+.+.+.....++.| |.+.. ...+|+| .+|++|+++..|+.
T Consensus 771 LD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~-l~~aD~I-i~L~~G~i~~~Gt~ 823 (1495)
T PLN03232 771 LDAHVAHQVFDSCMKDELKGKTRVLVTNQLHF-LPLMDRI-ILVSEGMIKEEGTF 823 (1495)
T ss_pred cCHHHHHHHHHHHhhhhhcCCEEEEEECChhh-HHhCCEE-EEEeCCEEEEecCH
Confidence 9999877776654322224444 98865 5669999 89999999887754
No 455
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.99 E-value=2.5e-09 Score=91.88 Aligned_cols=44 Identities=23% Similarity=0.281 Sum_probs=29.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCC
Q 017295 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD 70 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g 70 (374)
+|+++|++|||||||++.+++... ..+|..++.+.....+.+++
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~ 45 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDG 45 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-ccccCCcchhhEEEEEEECC
Confidence 689999999999999999997633 24555555433333334443
No 456
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.99 E-value=2.4e-09 Score=91.85 Aligned_cols=35 Identities=40% Similarity=0.377 Sum_probs=27.9
Q ss_pred EEEEcCCCCcHHHHHHHHH--cCCCCCCCCCCcccCC
Q 017295 27 IGIVGLPNVGKSTLFNTLT--KLAIPAENFPFCTIEP 61 (374)
Q Consensus 27 vgLvG~nGaGKSTL~n~Lt--g~~~~~s~~pftT~~p 61 (374)
|+++|++|||||||+|.|+ +.....++++++|..+
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~ 38 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLI 38 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeE
Confidence 7999999999999999999 4434557777776543
No 457
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.99 E-value=4.5e-10 Score=95.48 Aligned_cols=23 Identities=43% Similarity=0.619 Sum_probs=21.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCC
Q 017295 27 IGIVGLPNVGKSTLFNTLTKLAI 49 (374)
Q Consensus 27 vgLvG~nGaGKSTL~n~Ltg~~~ 49 (374)
|+|+|+||||||||+|.|++...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~ 24 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQF 24 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCC
Confidence 79999999999999999999854
No 458
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.99 E-value=1.6e-09 Score=91.43 Aligned_cols=46 Identities=39% Similarity=0.353 Sum_probs=39.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCC
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD 70 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g 70 (374)
.+|+++|.+|||||||++.|++.....+.+|++|.+.....+.+++
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDG 47 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECC
Confidence 4799999999999999999999886667888888887777677665
No 459
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.98 E-value=2.3e-09 Score=97.55 Aligned_cols=49 Identities=14% Similarity=0.085 Sum_probs=32.4
Q ss_pred cCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCC
Q 017295 202 AKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADM 253 (374)
Q Consensus 202 ~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l 253 (374)
..|+++|.||.|.. .......+..+++...+ +.+++.+||+++.++.++
T Consensus 109 ~~piilVgNK~DL~--~~~~v~~~~~~~~~~~~-~~~~~~iSAktg~gv~~l 157 (215)
T cd04109 109 QPLVVLVGNKTDLE--HNRTVKDDKHARFAQAN-GMESCLVSAKTGDRVNLL 157 (215)
T ss_pred CceEEEEEECcccc--cccccCHHHHHHHHHHc-CCEEEEEECCCCCCHHHH
Confidence 46799999999742 11222334455555444 567899999999877655
No 460
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.98 E-value=4.2e-10 Score=98.16 Aligned_cols=24 Identities=38% Similarity=0.574 Sum_probs=22.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcC
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
..+++|+|+||||||||++.|+|.
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Confidence 567999999999999999999987
No 461
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.98 E-value=5.2e-10 Score=94.20 Aligned_cols=122 Identities=13% Similarity=0.138 Sum_probs=82.6
Q ss_pred ccCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCC---ceeEEEeCCcchhhhhh-----hccCCCC-ccccch
Q 017295 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP---NEARVNIPDERFEWLCQ-----LFKPKSA-VPAFLE 91 (374)
Q Consensus 21 i~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p---~~G~i~~~g~~~~~l~~-----~~~~~~~-~~~~~~ 91 (374)
|..|..+.|+||+||||||||.-+.|. +.+ -+|++.+++++++.++. .+..|+. ++++++
T Consensus 25 ia~GeivtlMGPSGcGKSTLls~~~G~-----------La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphls 93 (213)
T COG4136 25 IAKGEIVTLMGPSGCGKSTLLSWMIGA-----------LAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLS 93 (213)
T ss_pred ecCCcEEEEECCCCccHHHHHHHHHhh-----------cccCcceeeEEEECCeeccccchhhhheeeeecccccccccc
Confidence 445778999999999999999999998 433 47999999999876553 3445555 667777
Q ss_pred HhhHhhhhcccc-CCCC---------------CCCCCceeEecC------------CCCCchhHHHHHHHHHhhcHHHHH
Q 017295 92 IHDIAGLVRGAH-EGQG---------------AFEDPDIIHVDD------------SVDPVRDLEVISAELRLKDIEFME 143 (374)
Q Consensus 92 v~D~~gl~~~~~-~~~~---------------~~~~~~il~l~~------------~~dP~~~l~ilde~l~~~D~~~~~ 143 (374)
|-.+..+.-.++ +|.. .+-+...-.+++ ...| ...++|||++.+|...+.
T Consensus 94 Vg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~P--k~lLLDEPFS~LD~ALR~ 171 (213)
T COG4136 94 VGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQP--KALLLDEPFSRLDVALRD 171 (213)
T ss_pred cccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCc--ceeeeCCchhHHHHHHHH
Confidence 777766532221 1110 111111122222 3468 889999999999999888
Q ss_pred HHHHHHHHHHHc
Q 017295 144 RRIEDVEKSMKR 155 (374)
Q Consensus 144 ~~~~~i~~~~~~ 155 (374)
+..+.+-...+.
T Consensus 172 qfR~wVFs~~r~ 183 (213)
T COG4136 172 QFRQWVFSEVRA 183 (213)
T ss_pred HHHHHHHHHHHh
Confidence 888766544433
No 462
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.97 E-value=2.9e-09 Score=92.10 Aligned_cols=45 Identities=20% Similarity=0.241 Sum_probs=29.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCC
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD 70 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g 70 (374)
.+|+++|.+|||||||++.++... -..+|+.|+.....-.+.+++
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~ 46 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGI-FVEKYDPTIEDSYRKQVEVDG 46 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCC-CCcccCCcchheEEEEEEECC
Confidence 468999999999999999988542 234555555433333344443
No 463
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.97 E-value=2.6e-09 Score=92.69 Aligned_cols=48 Identities=25% Similarity=0.282 Sum_probs=30.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCc
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDE 71 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~ 71 (374)
-.+++++|++|||||||++.+++........|..+.+.....+.+.+.
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~ 54 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGE 54 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCE
Confidence 367999999999999999999965433222333323333334555543
No 464
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.97 E-value=1.5e-09 Score=95.51 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCC
Q 017295 26 KIGIVGLPNVGKSTLFNTLTKLAI 49 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Ltg~~~ 49 (374)
.|+++|.+|||||||+|.|++...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~ 24 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTG 24 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcC
Confidence 379999999999999999998854
No 465
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.95 E-value=1.8e-09 Score=95.77 Aligned_cols=46 Identities=30% Similarity=0.434 Sum_probs=34.5
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCC
Q 017295 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD 70 (374)
Q Consensus 22 ~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g 70 (374)
+...+++++|++|||||||++.+++.... .+ .+|..|+.+.+.+.+
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~--~~-~~t~~~~~~~~~~~~ 60 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA--QH-QPTQHPTSEELAIGN 60 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCc--cc-CCccccceEEEEECC
Confidence 44577999999999999999999986432 22 346677777776654
No 466
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.95 E-value=4.6e-09 Score=91.14 Aligned_cols=49 Identities=12% Similarity=0.213 Sum_probs=33.4
Q ss_pred cCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCC
Q 017295 202 AKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADM 253 (374)
Q Consensus 202 ~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l 253 (374)
..|+++|.||+|... ......+..+++.... +.+++.+||+.+.++.++
T Consensus 107 ~~~iiiv~nK~Dl~~--~~~~~~~~~~~~~~~~-~~~~~e~Sa~~~~~i~e~ 155 (166)
T cd04122 107 NTVIFLIGNKADLEA--QRDVTYEEAKQFADEN-GLLFLECSAKTGENVEDA 155 (166)
T ss_pred CCeEEEEEECccccc--ccCcCHHHHHHHHHHc-CCEEEEEECCCCCCHHHH
Confidence 579999999997422 1122344555655444 568999999999887644
No 467
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=98.94 E-value=9e-09 Score=88.81 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcC
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
.+++|+|.+|+|||||++.+.+.
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~ 24 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSG 24 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999888765
No 468
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=98.94 E-value=5e-09 Score=92.03 Aligned_cols=49 Identities=14% Similarity=0.103 Sum_probs=32.9
Q ss_pred cCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCC
Q 017295 202 AKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADM 253 (374)
Q Consensus 202 ~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l 253 (374)
..|+++|.||+|.. .......+..+++.... +.+++.+||+.+.++.++
T Consensus 120 ~~piiiv~nK~Dl~--~~~~v~~~~~~~~~~~~-~~~~~e~Sak~~~~v~~l 168 (180)
T cd04127 120 NPDIVLCGNKADLE--DQRQVSEEQAKALADKY-GIPYFETSAATGTNVEKA 168 (180)
T ss_pred CCcEEEEEeCccch--hcCccCHHHHHHHHHHc-CCeEEEEeCCCCCCHHHH
Confidence 47899999999742 21122334555555544 568999999998876654
No 469
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.94 E-value=3.3e-09 Score=91.32 Aligned_cols=49 Identities=14% Similarity=0.165 Sum_probs=32.8
Q ss_pred cCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCC
Q 017295 202 AKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADM 253 (374)
Q Consensus 202 ~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l 253 (374)
..|+++|+||.|... ......+.+..+.... +.+++.+||+.+.++.++
T Consensus 105 ~~~iivv~nK~D~~~--~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~ 153 (161)
T cd04113 105 NIVVILVGNKSDLAD--QREVTFLEASRFAQEN-GLLFLETSALTGENVEEA 153 (161)
T ss_pred CCeEEEEEEchhcch--hccCCHHHHHHHHHHc-CCEEEEEECCCCCCHHHH
Confidence 579999999997422 1222344555555444 578999999998776544
No 470
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.94 E-value=7.4e-09 Score=89.70 Aligned_cols=50 Identities=8% Similarity=0.174 Sum_probs=32.3
Q ss_pred cCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCC
Q 017295 202 AKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADM 253 (374)
Q Consensus 202 ~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l 253 (374)
..|+++|+||+|.. .......+...++.+.+....++++||+.+.++.++
T Consensus 108 ~~p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 157 (165)
T cd01864 108 NVVLLLIGNKCDLE--EQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEA 157 (165)
T ss_pred CCcEEEEEECcccc--cccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHH
Confidence 57999999999742 222223445555554443346899999998766544
No 471
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.94 E-value=5.6e-09 Score=89.42 Aligned_cols=49 Identities=8% Similarity=0.127 Sum_probs=31.7
Q ss_pred cCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCC
Q 017295 202 AKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADM 253 (374)
Q Consensus 202 ~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l 253 (374)
..|+++|+||+|... ......+.++++.... +.+++++||+.+.++.++
T Consensus 105 ~~piiiv~nK~D~~~--~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~gi~~~ 153 (162)
T cd04123 105 NISLVIVGNKIDLER--QRVVSKSEAEEYAKSV-GAKHFETSAKTGKGIEEL 153 (162)
T ss_pred CCeEEEEEECccccc--ccCCCHHHHHHHHHHc-CCEEEEEeCCCCCCHHHH
Confidence 589999999997431 1111234455554433 567899999998766544
No 472
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.93 E-value=5.2e-09 Score=90.66 Aligned_cols=58 Identities=29% Similarity=0.300 Sum_probs=37.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhh
Q 017295 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~ 99 (374)
+|+++|++|||||||++.+.+.. -..+|+.++.......+.+++..+ .++++|++|..
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~i~D~~g~~ 58 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKR-FIGEYDPNLESLYSRQVTIDGEQV---------------SLEILDTAGQQ 58 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCc-cccccCCChHHhceEEEEECCEEE---------------EEEEEECCCCc
Confidence 37999999999999998887642 235666665433444455554321 25677777754
No 473
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=98.93 E-value=7.1e-09 Score=90.21 Aligned_cols=51 Identities=14% Similarity=0.118 Sum_probs=31.5
Q ss_pred ccCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCC
Q 017295 201 TAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADM 253 (374)
Q Consensus 201 ~~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l 253 (374)
...|+++++||.|... ......+....+...+...+++.+||+.+.++.++
T Consensus 105 ~~~piiiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~ 155 (168)
T cd04177 105 DNVPMVLVGNKADLED--DRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEV 155 (168)
T ss_pred CCCCEEEEEEChhccc--cCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHH
Confidence 3689999999997421 11112233334333332367999999998776543
No 474
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.93 E-value=1.1e-09 Score=99.24 Aligned_cols=24 Identities=29% Similarity=0.224 Sum_probs=21.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCC
Q 017295 26 KIGIVGLPNVGKSTLFNTLTKLAI 49 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Ltg~~~ 49 (374)
+|+|+|.+|||||||++.|++...
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~ 24 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSK 24 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcC
Confidence 479999999999999999987643
No 475
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.93 E-value=3.2e-09 Score=92.69 Aligned_cols=54 Identities=26% Similarity=0.342 Sum_probs=35.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhh
Q 017295 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~ 99 (374)
+|.++|.+|||||||++.+++... .+ +.+|+.++...+.+.+. .+.+.|++|..
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~--~~-~~~T~~~~~~~~~~~~~-----------------~i~l~Dt~G~~ 54 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF--MQ-PIPTIGFNVETVEYKNL-----------------KFTIWDVGGKH 54 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC--CC-cCCcCceeEEEEEECCE-----------------EEEEEECCCCh
Confidence 478999999999999999998622 22 34455444444443322 25777887753
No 476
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.93 E-value=7.2e-10 Score=95.20 Aligned_cols=133 Identities=20% Similarity=0.233 Sum_probs=86.9
Q ss_pred cccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCc--chh-------------hh
Q 017295 16 PILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDE--RFE-------------WL 76 (374)
Q Consensus 16 ~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~--~~~-------------~l 76 (374)
+||.++++ |+.++|=|++|+|||||+++|-+. +.|++|.|.+... -++ ..
T Consensus 25 pV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaN-----------Y~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~ 93 (235)
T COG4778 25 PVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYAN-----------YLPDEGQILVRHEGEWVDLVTAEPREVLEVRRT 93 (235)
T ss_pred eeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhc-----------cCCCCceEEEEeCcchhhhhccChHHHHHHHHh
Confidence 67887775 556999999999999999999998 8899999987432 111 11
Q ss_pred hhhccCCCC-ccccchHhhHh---hhhcc------------------------------ccCCCC-------CCCCCcee
Q 017295 77 CQLFKPKSA-VPAFLEIHDIA---GLVRG------------------------------AHEGQG-------AFEDPDII 115 (374)
Q Consensus 77 ~~~~~~~~~-~~~~~~v~D~~---gl~~~------------------------------~~~~~~-------~~~~~~il 115 (374)
..+|++|.. +.+.+.-.|++ .+.++ +|+|+. .|
T Consensus 94 TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgf------ 167 (235)
T COG4778 94 TIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGF------ 167 (235)
T ss_pred hhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhh------
Confidence 114555443 22223223322 11111 111111 11
Q ss_pred EecCCCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHH
Q 017295 116 HVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRV 171 (374)
Q Consensus 116 ~l~~~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v 171 (374)
+.|= .++++|||++.+|.....-..+.|.+.+.+|.. ||-+.-..++||+
T Consensus 168 ----ivd~--pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~ 222 (235)
T COG4778 168 ----IVDY--PILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRL 222 (235)
T ss_pred ----hccC--ceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhhe
Confidence 1122 577899999999999988889999877656643 9888878889987
No 477
>PLN03110 Rab GTPase; Provisional
Probab=98.92 E-value=5.3e-09 Score=95.39 Aligned_cols=50 Identities=20% Similarity=0.265 Sum_probs=32.8
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCc
Q 017295 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDE 71 (374)
Q Consensus 22 ~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~ 71 (374)
+...+|++||++|+|||||++.+++........|....+.....+.+++.
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~ 59 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGK 59 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCE
Confidence 34568999999999999999999987543333333223333445555553
No 478
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.92 E-value=7.8e-09 Score=90.40 Aligned_cols=47 Identities=13% Similarity=0.150 Sum_probs=31.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCc-eeEEEeCCc
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN-EARVNIPDE 71 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~-~G~i~~~g~ 71 (374)
.++.++|.+|+|||||++.+++....+.+|+.|+.... .-.+.++|.
T Consensus 5 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~ 52 (169)
T cd01892 5 FLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQ 52 (169)
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCe
Confidence 56999999999999999999987543345555442221 123555553
No 479
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.92 E-value=5.1e-10 Score=99.94 Aligned_cols=44 Identities=20% Similarity=0.354 Sum_probs=31.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC------C-CCCCCCCcccCCceeEEEeC
Q 017295 26 KIGIVGLPNVGKSTLFNTLTKLA------I-PAENFPFCTIEPNEARVNIP 69 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Ltg~~------~-~~s~~pftT~~p~~G~i~~~ 69 (374)
+|+++|.+|+|||||++.|++.. . ..+..+++|+++....+.+.
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~ 52 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVD 52 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEec
Confidence 58999999999999999999731 1 12345567777665555553
No 480
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.92 E-value=5.6e-09 Score=91.81 Aligned_cols=45 Identities=20% Similarity=0.201 Sum_probs=30.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCC
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD 70 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g 70 (374)
.+|+|+|++|||||||++.+++... +..++.|+.......+.+++
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~ 46 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHF-VESYYPTIENTFSKIIRYKG 46 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-ccccCcchhhhEEEEEEECC
Confidence 4689999999999999999998643 23343344433344454443
No 481
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.92 E-value=6.3e-09 Score=89.60 Aligned_cols=50 Identities=12% Similarity=0.180 Sum_probs=32.6
Q ss_pred ccCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCC
Q 017295 201 TAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADM 253 (374)
Q Consensus 201 ~~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l 253 (374)
...|+++++||+|.. .......+.+.++.... +.+++++||+++.++.++
T Consensus 105 ~~~~iivv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~l 154 (163)
T cd01860 105 PNIIIALVGNKADLE--SKRQVSTEEAQEYADEN-GLLFFETSAKTGENVNEL 154 (163)
T ss_pred CCCeEEEEEECcccc--ccCcCCHHHHHHHHHHc-CCEEEEEECCCCCCHHHH
Confidence 368999999999742 11222344555555444 467999999988765543
No 482
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.91 E-value=9.2e-10 Score=102.35 Aligned_cols=61 Identities=28% Similarity=0.349 Sum_probs=52.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhcc
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~~-~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~~ 101 (374)
...||+||+||+|||||.|-+.|.++ ++|..+.||+.-..|.+.-+..+ +-++|+||++..
T Consensus 72 ~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQ-----------------lvf~DTPGlvs~ 133 (379)
T KOG1423|consen 72 SLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQ-----------------LVFYDTPGLVSK 133 (379)
T ss_pred EEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceE-----------------EEEecCCccccc
Confidence 34699999999999999999999998 55999999999999988765543 788999999743
No 483
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.91 E-value=1.3e-09 Score=94.31 Aligned_cols=43 Identities=21% Similarity=0.224 Sum_probs=33.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEe
Q 017295 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNI 68 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~ 68 (374)
.++|+|++|||||||+++|++........+++|.......+..
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~ 44 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPA 44 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEec
Confidence 4899999999999999999988665566677776654444444
No 484
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.91 E-value=2.2e-10 Score=105.21 Aligned_cols=61 Identities=15% Similarity=0.013 Sum_probs=48.8
Q ss_pred CCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHH------hCCCceec
Q 017295 121 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWL------QDGKDVRL 183 (374)
Q Consensus 121 ~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L------~~G~iv~~ 183 (374)
.+|..+++++|||+.++|........+.+.+..+++.+ |++..+ .+||++ .+| ++|+++..
T Consensus 154 ~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~-~~~d~i-~~l~~~~~~~~G~iv~~ 225 (226)
T cd03270 154 SGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTI-RAADHV-IDIGPGAGVHGGEIVAQ 225 (226)
T ss_pred hCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHH-HhCCEE-EEeCCCccccCCEEEec
Confidence 45512699999999999999999999999887655554 999875 589999 888 77777654
No 485
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.91 E-value=2.1e-09 Score=90.77 Aligned_cols=56 Identities=25% Similarity=0.325 Sum_probs=44.8
Q ss_pred EEcCCCCcHHHHHHHHHcCCCC-CCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhc
Q 017295 29 IVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (374)
Q Consensus 29 LvG~nGaGKSTL~n~Ltg~~~~-~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~ 100 (374)
|+|++|||||||+|.|++.... .++++++|..+....+...+ ...+.++|++|+..
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~Dt~g~~~ 57 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP----------------LGPVVLIDTPGIDE 57 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC----------------CCcEEEEECCCCCc
Confidence 5899999999999999998776 68899999888877766542 11278899998753
No 486
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=98.91 E-value=6.8e-09 Score=90.28 Aligned_cols=49 Identities=24% Similarity=0.300 Sum_probs=33.4
Q ss_pred cCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCC
Q 017295 202 AKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADM 253 (374)
Q Consensus 202 ~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l 253 (374)
..|+++|+||.|.. ......+.++++.......+++.+||+.+.++.++
T Consensus 114 ~~piilv~nK~Dl~---~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 162 (170)
T cd04116 114 SFPFVVLGNKNDIP---ERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAA 162 (170)
T ss_pred CCcEEEEEECcccc---ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHH
Confidence 57999999999742 12233456666665543347899999988766544
No 487
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.90 E-value=6.7e-09 Score=89.88 Aligned_cols=46 Identities=17% Similarity=0.210 Sum_probs=30.0
Q ss_pred cCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCC
Q 017295 202 AKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADM 253 (374)
Q Consensus 202 ~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l 253 (374)
..|+++|+||+|.+. ...+...++.... +.+++++||+.+.++.++
T Consensus 104 ~~p~ivv~nK~Dl~~-----~~~~~~~~~~~~~-~~~~~~~Sa~~~~gv~~l 149 (161)
T cd04124 104 EIPCIVVANKIDLDP-----SVTQKKFNFAEKH-NLPLYYVSAADGTNVVKL 149 (161)
T ss_pred CCcEEEEEECccCch-----hHHHHHHHHHHHc-CCeEEEEeCCCCCCHHHH
Confidence 589999999997421 1112233333333 567999999998877655
No 488
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=98.89 E-value=9.6e-10 Score=92.48 Aligned_cols=44 Identities=27% Similarity=0.389 Sum_probs=39.3
Q ss_pred ccCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhh
Q 017295 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW 75 (374)
Q Consensus 21 i~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~ 75 (374)
+..|..++|+|+||||||||+++|+|. ..|++|.|.+++.++..
T Consensus 8 i~~g~~~~i~G~nGsGKStLl~~l~g~-----------~~~~~G~i~~~~~~~~~ 51 (137)
T PF00005_consen 8 IKPGEIVAIVGPNGSGKSTLLKALAGL-----------LPPDSGSILINGKDISD 51 (137)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHTTS-----------SHESEEEEEETTEEGTT
T ss_pred EcCCCEEEEEccCCCccccceeeeccc-----------ccccccccccccccccc
Confidence 456777999999999999999999999 78999999999987654
No 489
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.89 E-value=6.5e-09 Score=92.62 Aligned_cols=49 Identities=18% Similarity=0.190 Sum_probs=31.2
Q ss_pred cCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCC
Q 017295 202 AKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADM 253 (374)
Q Consensus 202 ~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l 253 (374)
..|+|+|.||+|... ...-..+...++...+ +.+++.+||+.+.++.++
T Consensus 106 ~~piilvgNK~Dl~~--~~~v~~~~~~~~~~~~-~~~~~e~SAk~~~~v~~l 154 (190)
T cd04144 106 DVPIMIVGNKCDKVY--EREVSTEEGAALARRL-GCEFIEASAKTNVNVERA 154 (190)
T ss_pred CCCEEEEEEChhccc--cCccCHHHHHHHHHHh-CCEEEEecCCCCCCHHHH
Confidence 589999999997421 1111222334444333 567999999998776544
No 490
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.89 E-value=5.5e-09 Score=90.58 Aligned_cols=47 Identities=11% Similarity=0.188 Sum_probs=32.4
Q ss_pred cCCEEEEEcCCCccccccccccHHHHHHHHHhhC-CCeEEEeeHHHHHHhcCC
Q 017295 202 AKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHG-GEQIIPFSCALERNLADM 253 (374)
Q Consensus 202 ~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~-~~~~i~vSa~~e~~l~~l 253 (374)
.+|+++++||+|.. . ...+.+.+++.... ..+++++||+.+.++.+|
T Consensus 91 ~~~ii~v~nK~Dl~--~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l 138 (158)
T PRK15467 91 SKRQIAVISKTDMP--D---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQL 138 (158)
T ss_pred CCCeEEEEEccccC--c---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHH
Confidence 68999999999742 1 12344555554442 248999999999887655
No 491
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.89 E-value=5.1e-09 Score=88.82 Aligned_cols=48 Identities=15% Similarity=0.221 Sum_probs=32.3
Q ss_pred cCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcC
Q 017295 202 AKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLAD 252 (374)
Q Consensus 202 ~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~ 252 (374)
..|+++++||+|.... .....+.++++.... +.+++.+||+.+.++.+
T Consensus 105 ~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i~~ 152 (159)
T cd00154 105 NIPIILVGNKIDLEDQ--RQVSTEEAQQFAKEN-GLLFFETSAKTGENVEE 152 (159)
T ss_pred CCcEEEEEEccccccc--ccccHHHHHHHHHHc-CCeEEEEecCCCCCHHH
Confidence 6899999999975211 122345566655443 56899999998766543
No 492
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.88 E-value=1.4e-08 Score=90.44 Aligned_cols=30 Identities=20% Similarity=0.371 Sum_probs=23.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCCC
Q 017295 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFP 55 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~p 55 (374)
+|+++|.+|+|||||++.+++.....++|.
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~ 31 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLVGPYQ 31 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCCcCcc
Confidence 689999999999999999998644333343
No 493
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.88 E-value=1.3e-08 Score=92.56 Aligned_cols=49 Identities=8% Similarity=0.099 Sum_probs=31.9
Q ss_pred cCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCC
Q 017295 202 AKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADM 253 (374)
Q Consensus 202 ~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l 253 (374)
..|.++|.||.|.. .......+..+++.+.. +.+++.+||+.+.++.++
T Consensus 109 ~~~iilvgNK~Dl~--~~~~v~~~~~~~~~~~~-~~~~~e~Sak~g~~v~e~ 157 (211)
T cd04111 109 RPVFILVGHKCDLE--SQRQVTREEAEKLAKDL-GMKYIETSARTGDNVEEA 157 (211)
T ss_pred CCeEEEEEEccccc--cccccCHHHHHHHHHHh-CCEEEEEeCCCCCCHHHH
Confidence 46789999999742 11122234445554444 468999999998887655
No 494
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.87 E-value=2.8e-10 Score=125.32 Aligned_cols=154 Identities=18% Similarity=0.217 Sum_probs=107.6
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCcccc
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAF 89 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~ 89 (374)
..+.|+++++ |..+|+||+.|||||||+.+|.|. ++..+|.+.++|. ..|.||..-..+
T Consensus 533 ~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGE-----------m~~~sG~v~v~gs------iaYv~Q~pWI~n 595 (1381)
T KOG0054|consen 533 PEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGE-----------MPKLSGSVAVNGS------VAYVPQQPWIQN 595 (1381)
T ss_pred CcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcC-----------cccccceEEEcCe------EEEeccccHhhC
Confidence 3347888885 455999999999999999999999 8899999999985 457777774445
Q ss_pred chHhhHhhhhccccCCCC------CCCCCce---------------eEecC------------CCCCchhHHHHHHHHHh
Q 017295 90 LEIHDIAGLVRGAHEGQG------AFEDPDI---------------IHVDD------------SVDPVRDLEVISAELRL 136 (374)
Q Consensus 90 ~~v~D~~gl~~~~~~~~~------~~~~~~i---------------l~l~~------------~~dP~~~l~ilde~l~~ 136 (374)
-++.|+.-++.......- |-...++ +.+++ -.|. |+.++|.|++.
T Consensus 596 gTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~a--dIYLLDDplSA 673 (1381)
T KOG0054|consen 596 GTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDA--DIYLLDDPLSA 673 (1381)
T ss_pred CcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccC--CEEEEcCcchh
Confidence 688888877643321100 1111110 11111 2345 88899999999
Q ss_pred hcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCCCh
Q 017295 137 KDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWKA 188 (374)
Q Consensus 137 ~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~~~ 188 (374)
.|...-..+.+..-...-+++| |.+. .+..+|.| .+|++|++...|+.++
T Consensus 674 VDahvg~~if~~ci~~~L~~KT~ILVTHql~-~L~~ad~I-ivl~~G~I~~~Gty~e 728 (1381)
T KOG0054|consen 674 VDAHVGKHIFEECIRGLLRGKTVILVTHQLQ-FLPHADQI-IVLKDGKIVESGTYEE 728 (1381)
T ss_pred hhHhhhHHHHHHHHHhhhcCCEEEEEeCchh-hhhhCCEE-EEecCCeEecccCHHH
Confidence 9998877777754433324444 8554 45668999 9999999998887653
No 495
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.87 E-value=2.7e-09 Score=91.58 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=21.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC
Q 017295 26 KIGIVGLPNVGKSTLFNTLTKLA 48 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Ltg~~ 48 (374)
+++++|.+|||||||++.+++..
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~ 23 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGE 23 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999885
No 496
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.87 E-value=1.4e-08 Score=90.23 Aligned_cols=23 Identities=39% Similarity=0.511 Sum_probs=21.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC
Q 017295 26 KIGIVGLPNVGKSTLFNTLTKLA 48 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Ltg~~ 48 (374)
+|+++|++|+|||||++.+++..
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~ 24 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDE 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999774
No 497
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.87 E-value=2.2e-09 Score=93.94 Aligned_cols=49 Identities=14% Similarity=0.043 Sum_probs=32.0
Q ss_pred ccCCEEEEEcCCCccccccccccHHHHHHHHHh----hCCCeEEEeeHHHHHHhcCC
Q 017295 201 TAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQE----HGGEQIIPFSCALERNLADM 253 (374)
Q Consensus 201 ~~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~----~~~~~~i~vSa~~e~~l~~l 253 (374)
...|+++|+||+|... ....+.+++++.. ....+++.+||+++.++.++
T Consensus 114 ~~~p~iiv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 166 (173)
T cd04154 114 AGATLLILANKQDLPG----ALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQG 166 (173)
T ss_pred cCCCEEEEEECccccc----CCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHH
Confidence 3689999999997421 1123455554421 12447999999999877644
No 498
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.86 E-value=3e-08 Score=88.63 Aligned_cols=52 Identities=6% Similarity=0.019 Sum_probs=33.9
Q ss_pred cCCEEEEEcCCCccccccccccHHHHHHHHHhh------CCCeEEEeeHHHHHHhcCCC
Q 017295 202 AKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEH------GGEQIIPFSCALERNLADMP 254 (374)
Q Consensus 202 ~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~------~~~~~i~vSa~~e~~l~~l~ 254 (374)
.+|.++|+||+|.... ......+.+.+++... .+.+++++||+.+.++.++.
T Consensus 117 ~~p~iiv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~~ 174 (194)
T cd01891 117 GLKPIVVINKIDRPDA-RPEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNLE 174 (194)
T ss_pred CCCEEEEEECCCCCCC-CHHHHHHHHHHHHHHhCCccccCccCEEEeehhccccccccc
Confidence 6899999999975211 1112344444544221 14579999999999988774
No 499
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.86 E-value=2.2e-09 Score=92.35 Aligned_cols=23 Identities=39% Similarity=0.528 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC
Q 017295 26 KIGIVGLPNVGKSTLFNTLTKLA 48 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Ltg~~ 48 (374)
+|+++|++|+|||||++.|+...
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~ 23 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGE 23 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCC
Confidence 47999999999999999997653
No 500
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.86 E-value=1.6e-09 Score=107.59 Aligned_cols=148 Identities=16% Similarity=0.249 Sum_probs=87.0
Q ss_pred cccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCc-chhhhhhhccCCC------
Q 017295 16 PILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDE-RFEWLCQLFKPKS------ 84 (374)
Q Consensus 16 ~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~-~~~~l~~~~~~~~------ 84 (374)
.+++++++| .+|++|||||||||||+++++|. +.|+.|++.-.-. .+.++.|....+-
T Consensus 404 ~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gd-----------l~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~ 472 (614)
T KOG0927|consen 404 MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGD-----------LQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSS 472 (614)
T ss_pred hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhc-----------cccccccccccccccchhhhhhhHhhcCcchhH
Confidence 455555555 45999999999999999999999 8999999864321 1222111000000
Q ss_pred ------CccccchHhhHhhhhcccc-CCCCCCCCCceeEecC------------CCCCchhHHHHHHHHHhhcHHHHHHH
Q 017295 85 ------AVPAFLEIHDIAGLVRGAH-EGQGAFEDPDIIHVDD------------SVDPVRDLEVISAELRLKDIEFMERR 145 (374)
Q Consensus 85 ------~~~~~~~v~D~~gl~~~~~-~~~~~~~~~~il~l~~------------~~dP~~~l~ilde~l~~~D~~~~~~~ 145 (374)
..+..-...+.-++..... .| .....++-.+++ ...| .+++||||++.+|+..+...
T Consensus 473 le~~~~~~~~~~~~e~~r~ilgrfgLtg--d~q~~p~~~LS~Gqr~rVlFa~l~~kqP--~lLlLDEPtnhLDi~tid~l 548 (614)
T KOG0927|consen 473 LEFMMPKFPDEKELEEMRSILGRFGLTG--DAQVVPMSQLSDGQRRRVLFARLAVKQP--HLLLLDEPTNHLDIETIDAL 548 (614)
T ss_pred HHHHHHhccccchHHHHHHHHHHhCCCc--cccccchhhcccccchhHHHHHHHhcCC--cEEEecCCCcCCCchhHHHH
Confidence 0000001111111110000 00 000111111221 3467 99999999999999998888
Q ss_pred HHHHHHHHHccC----ccchHHHHHHHHHHHHHHhCCCce
Q 017295 146 IEDVEKSMKRSN----DKQLKIEHELCQRVKAWLQDGKDV 181 (374)
Q Consensus 146 ~~~i~~~~~~~~----~H~~~~~~~~~d~v~~~L~~G~iv 181 (374)
-+.|.+. .|+ +|+...+..+++++ ..-+++.+.
T Consensus 549 aeaiNe~--~Ggvv~vSHDfrlI~qVaeEi-~~c~~~~~~ 585 (614)
T KOG0927|consen 549 AEAINEF--PGGVVLVSHDFRLISQVAEEI-WVCENGTVT 585 (614)
T ss_pred HHHHhcc--CCceeeeechhhHHHHHHHHh-HhhccCcee
Confidence 8777654 242 39999999999999 666666654
Done!