Query 017295
Match_columns 374
No_of_seqs 428 out of 3407
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 12:07:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017295.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017295hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ni3_A YCHF GTPase, YCHF GTP-b 100.0 1E-82 3.6E-87 625.0 29.4 364 1-368 1-391 (392)
2 2ohf_A Protein OLA1, GTP-bindi 100.0 6E-82 2.1E-86 618.2 22.2 372 1-374 1-395 (396)
3 1jal_A YCHF protein; nucleotid 100.0 2.2E-78 7.6E-83 587.8 26.2 342 23-368 1-363 (363)
4 2dby_A GTP-binding protein; GD 100.0 1E-75 3.5E-80 572.2 29.8 341 25-368 2-368 (368)
5 4a9a_A Ribosome-interacting GT 100.0 1.2E-50 4E-55 395.4 6.0 276 25-365 73-374 (376)
6 1wxq_A GTP-binding protein; st 100.0 1.2E-48 4.2E-53 385.5 20.6 313 25-366 1-394 (397)
7 2eki_A DRG 1, developmentally- 99.8 3.1E-22 1.1E-26 153.5 4.6 78 278-367 5-87 (93)
8 3fvq_A Fe(3+) IONS import ATP- 99.8 4.5E-21 1.5E-25 185.5 -0.7 159 14-186 16-223 (359)
9 4g1u_C Hemin import ATP-bindin 99.8 3.2E-21 1.1E-25 180.0 -2.0 159 14-186 23-232 (266)
10 3tui_C Methionine import ATP-b 99.8 3.6E-21 1.2E-25 186.4 -1.9 158 15-186 41-248 (366)
11 3rlf_A Maltose/maltodextrin im 99.8 3.7E-21 1.3E-25 187.4 -2.6 159 14-186 15-218 (381)
12 2olj_A Amino acid ABC transpor 99.8 1.2E-20 4E-25 175.9 -1.1 158 14-185 36-242 (263)
13 2it1_A 362AA long hypothetical 99.8 1.9E-20 6.4E-25 181.7 -0.6 158 14-185 15-217 (362)
14 3tif_A Uncharacterized ABC tra 99.8 1.3E-20 4.5E-25 172.8 -1.7 158 15-187 18-230 (235)
15 2yyz_A Sugar ABC transporter, 99.8 1.6E-20 5.4E-25 182.1 -1.6 159 14-186 15-218 (359)
16 1ji0_A ABC transporter; ATP bi 99.8 2.7E-20 9.3E-25 171.2 -0.2 158 14-185 18-222 (240)
17 1b0u_A Histidine permease; ABC 99.8 1.1E-20 3.7E-25 176.1 -2.9 158 14-185 18-236 (262)
18 1z47_A CYSA, putative ABC-tran 99.8 1.6E-20 5.3E-25 181.7 -1.9 158 14-185 27-229 (355)
19 1g6h_A High-affinity branched- 99.8 1.2E-20 4.2E-25 175.3 -3.1 159 14-186 19-237 (257)
20 2pcj_A ABC transporter, lipopr 99.8 1.9E-20 6.3E-25 170.6 -1.9 156 14-184 16-221 (224)
21 1v43_A Sugar-binding transport 99.8 2.4E-20 8.3E-25 181.6 -1.7 158 14-185 23-225 (372)
22 3gfo_A Cobalt import ATP-bindi 99.8 8.8E-21 3E-25 177.8 -4.9 159 15-187 21-229 (275)
23 1g29_1 MALK, maltose transport 99.8 2.7E-20 9.3E-25 181.4 -2.3 159 14-186 15-224 (372)
24 1vpl_A ABC transporter, ATP-bi 99.8 1.5E-20 5E-25 174.6 -4.3 158 14-185 27-229 (256)
25 3d31_A Sulfate/molybdate ABC t 99.8 4E-20 1.4E-24 178.6 -1.5 155 17-185 15-211 (348)
26 1oxx_K GLCV, glucose, ABC tran 99.7 2.7E-20 9.2E-25 180.3 -4.3 155 17-185 20-224 (353)
27 2onk_A Molybdate/tungstate ABC 99.7 8.6E-20 3E-24 167.8 -0.7 155 17-185 14-210 (240)
28 2qi9_C Vitamin B12 import ATP- 99.7 1.3E-19 4.5E-24 167.5 -3.5 155 16-185 14-216 (249)
29 1udx_A The GTP-binding protein 99.7 1.9E-17 6.4E-22 163.6 8.5 68 20-103 153-220 (416)
30 3nh6_A ATP-binding cassette SU 99.7 3E-19 1E-23 169.7 -6.3 157 14-186 66-272 (306)
31 2yz2_A Putative ABC transporte 99.7 6.9E-19 2.4E-23 164.3 -4.0 157 15-185 20-221 (266)
32 2nq2_C Hypothetical ABC transp 99.7 2.4E-18 8.1E-23 159.4 -1.5 151 14-185 17-211 (253)
33 2ixe_A Antigen peptide transpo 99.7 1.1E-18 3.6E-23 163.4 -4.1 155 15-185 32-239 (271)
34 2ff7_A Alpha-hemolysin translo 99.7 6.9E-19 2.4E-23 162.5 -5.4 155 14-185 21-226 (247)
35 2ihy_A ABC transporter, ATP-bi 99.7 5.4E-19 1.8E-23 166.0 -6.6 158 14-185 33-246 (279)
36 1sgw_A Putative ABC transporte 99.7 2.8E-18 9.5E-23 155.0 -3.0 143 16-171 23-203 (214)
37 2d2e_A SUFC protein; ABC-ATPas 99.6 1.2E-18 4.2E-23 161.1 -6.1 160 14-185 15-227 (250)
38 1mv5_A LMRA, multidrug resista 99.6 1.2E-18 4.1E-23 160.5 -8.5 155 14-185 14-220 (243)
39 2zu0_C Probable ATP-dependent 99.6 4E-18 1.4E-22 159.2 -5.8 162 14-187 32-250 (267)
40 2pze_A Cystic fibrosis transme 99.6 9E-18 3.1E-22 153.3 -7.3 149 14-185 20-212 (229)
41 2pjz_A Hypothetical protein ST 99.6 1.7E-17 5.9E-22 154.4 -5.8 154 15-185 18-209 (263)
42 2cbz_A Multidrug resistance-as 99.6 5.6E-18 1.9E-22 155.5 -9.7 150 14-185 17-211 (237)
43 3b5x_A Lipid A export ATP-bind 99.6 1.4E-16 4.9E-21 164.3 -0.3 155 15-185 356-561 (582)
44 2ghi_A Transport protein; mult 99.6 1.1E-17 3.9E-22 155.5 -7.9 154 15-185 33-236 (260)
45 3gd7_A Fusion complex of cysti 99.6 1.3E-17 4.3E-22 163.4 -8.4 156 14-186 33-237 (390)
46 3qf4_B Uncharacterized ABC tra 99.6 1.3E-16 4.3E-21 165.1 -2.4 157 14-186 367-573 (598)
47 3qf4_A ABC transporter, ATP-bi 99.5 5.4E-17 1.8E-21 167.5 -6.1 157 14-186 355-561 (587)
48 2yl4_A ATP-binding cassette SU 99.5 1.9E-16 6.5E-21 163.7 -2.3 157 15-187 357-566 (595)
49 4a82_A Cystic fibrosis transme 99.5 4.6E-17 1.6E-21 167.8 -8.1 157 14-186 353-559 (578)
50 1lnz_A SPO0B-associated GTP-bi 99.5 6.1E-15 2.1E-19 142.2 6.2 65 25-105 159-223 (342)
51 3b60_A Lipid A export ATP-bind 99.5 1.2E-16 4.3E-21 164.7 -6.1 155 15-185 356-561 (582)
52 2bbs_A Cystic fibrosis transme 99.5 2.6E-16 9E-21 148.4 -7.3 147 15-185 51-241 (290)
53 2qtf_A Protein HFLX, GTP-bindi 99.4 9.5E-14 3.2E-18 135.0 8.2 50 23-72 177-227 (364)
54 3ozx_A RNAse L inhibitor; ATP 99.4 5E-15 1.7E-19 150.9 -1.1 139 21-178 291-462 (538)
55 3iby_A Ferrous iron transport 99.4 3.2E-14 1.1E-18 131.9 4.0 57 26-99 3-59 (256)
56 3g5u_A MCG1178, multidrug resi 99.4 4.7E-15 1.6E-19 165.2 -4.6 156 15-186 403-608 (1284)
57 3i8s_A Ferrous iron transport 99.4 7.9E-14 2.7E-18 130.4 4.3 59 25-100 4-62 (274)
58 1yqt_A RNAse L inhibitor; ATP- 99.4 6.6E-15 2.3E-19 150.2 -3.3 146 22-187 310-489 (538)
59 3bk7_A ABC transporter ATP-bin 99.4 7E-15 2.4E-19 151.9 -3.4 146 22-187 380-559 (607)
60 1mky_A Probable GTP-binding pr 99.4 2E-13 6.7E-18 136.1 7.0 59 24-99 180-239 (439)
61 3b1v_A Ferrous iron uptake tra 99.4 1.2E-13 4.1E-18 129.1 4.8 57 25-99 4-60 (272)
62 2wji_A Ferrous iron transport 99.4 9.7E-13 3.3E-17 112.8 10.1 58 25-99 4-61 (165)
63 3g5u_A MCG1178, multidrug resi 99.4 5.8E-15 2E-19 164.5 -5.9 156 15-186 1046-1253(1284)
64 1xzp_A Probable tRNA modificat 99.4 1.7E-13 5.8E-18 137.8 5.1 60 23-99 242-302 (482)
65 3a1s_A Iron(II) transport prot 99.4 2.9E-13 9.9E-18 125.5 5.4 58 25-99 6-63 (258)
66 3j16_B RLI1P; ribosome recycli 99.4 4.3E-14 1.5E-18 145.8 -0.2 144 25-188 379-556 (608)
67 3iev_A GTP-binding protein ERA 99.4 7E-12 2.4E-16 119.1 14.9 59 25-100 11-71 (308)
68 4f4c_A Multidrug resistance pr 99.3 6.6E-15 2.3E-19 164.4 -8.5 157 14-186 1091-1299(1321)
69 1wf3_A GTP-binding protein; GT 99.3 1.1E-12 3.8E-17 124.3 7.5 58 25-99 8-66 (301)
70 2hjg_A GTP-binding protein ENG 99.3 1.9E-12 6.4E-17 128.9 9.4 59 25-100 176-235 (436)
71 4f4c_A Multidrug resistance pr 99.3 1.9E-14 6.4E-19 160.7 -5.8 157 14-186 430-636 (1321)
72 1mky_A Probable GTP-binding pr 99.3 1.3E-12 4.5E-17 130.1 8.0 58 26-100 3-61 (439)
73 4dhe_A Probable GTP-binding pr 99.3 1.2E-12 4E-17 117.4 6.5 59 24-99 29-90 (223)
74 3k53_A Ferrous iron transport 99.3 4.5E-13 1.5E-17 124.8 3.7 58 25-99 4-61 (271)
75 2e87_A Hypothetical protein PH 99.3 6E-12 2E-16 122.0 11.2 60 23-99 166-225 (357)
76 2gj8_A MNME, tRNA modification 99.3 7.7E-13 2.6E-17 114.4 4.5 59 23-98 3-62 (172)
77 2lkc_A Translation initiation 99.3 1.8E-11 6.1E-16 105.2 12.9 60 23-99 7-66 (178)
78 1ega_A Protein (GTP-binding pr 99.3 6.6E-12 2.3E-16 118.9 11.0 58 25-99 9-67 (301)
79 4dcu_A GTP-binding protein ENG 99.3 7.6E-12 2.6E-16 125.2 11.7 62 23-101 194-256 (456)
80 1tq4_A IIGP1, interferon-induc 99.3 4.1E-13 1.4E-17 132.3 2.0 139 26-179 71-255 (413)
81 3t5g_A GTP-binding protein RHE 99.3 1.8E-11 6.2E-16 105.7 11.8 152 25-253 7-159 (181)
82 3ozx_A RNAse L inhibitor; ATP 99.3 4.3E-14 1.5E-18 144.1 -5.7 147 18-179 19-214 (538)
83 3tw8_B RAS-related protein RAB 99.3 8E-12 2.8E-16 107.4 9.3 152 24-253 9-161 (181)
84 3q85_A GTP-binding protein REM 99.3 6.4E-12 2.2E-16 107.1 8.6 48 25-72 3-50 (169)
85 2wjg_A FEOB, ferrous iron tran 99.3 4E-12 1.4E-16 110.6 6.8 58 25-99 8-65 (188)
86 1z08_A RAS-related protein RAB 99.3 2E-11 6.8E-16 104.0 10.9 153 24-253 6-159 (170)
87 2qu8_A Putative nucleolar GTP- 99.3 7.8E-12 2.7E-16 113.0 8.4 59 24-99 29-87 (228)
88 3gee_A MNME, tRNA modification 99.3 3.3E-12 1.1E-16 128.3 6.5 62 22-100 231-293 (476)
89 3q72_A GTP-binding protein RAD 99.3 2.2E-11 7.5E-16 103.4 10.6 57 25-99 3-60 (166)
90 3tkl_A RAS-related protein RAB 99.3 1.1E-11 3.8E-16 108.4 8.7 60 24-98 16-75 (196)
91 1yqt_A RNAse L inhibitor; ATP- 99.2 3.8E-13 1.3E-17 137.3 -1.5 149 16-178 36-234 (538)
92 3bk7_A ABC transporter ATP-bin 99.2 1.5E-13 5.1E-18 141.9 -4.7 149 16-178 106-304 (607)
93 3clv_A RAB5 protein, putative; 99.2 1.8E-11 6.1E-16 107.1 9.3 48 202-253 147-194 (208)
94 1ky3_A GTP-binding protein YPT 99.2 6.5E-11 2.2E-15 101.8 12.6 160 24-253 8-168 (182)
95 3j16_B RLI1P; ribosome recycli 99.2 1.3E-13 4.5E-18 142.2 -5.3 58 120-180 237-299 (608)
96 2bcg_Y Protein YP2, GTP-bindin 99.2 4.9E-11 1.7E-15 105.5 11.7 153 24-253 8-161 (206)
97 3oes_A GTPase rhebl1; small GT 99.2 4E-11 1.4E-15 105.9 11.1 153 24-253 24-177 (201)
98 4dsu_A GTPase KRAS, isoform 2B 99.2 1.3E-11 4.4E-16 107.0 7.7 47 24-71 4-50 (189)
99 2a5j_A RAS-related protein RAB 99.2 3.1E-11 1.1E-15 105.6 10.2 154 23-253 20-174 (191)
100 1g16_A RAS-related protein SEC 99.2 1.6E-11 5.4E-16 104.5 7.9 60 25-99 4-63 (170)
101 1wms_A RAB-9, RAB9, RAS-relate 99.2 2.5E-11 8.4E-16 104.2 9.2 50 201-253 115-164 (177)
102 3pqc_A Probable GTP-binding pr 99.2 3.1E-11 1.1E-15 105.1 9.9 56 24-99 23-79 (195)
103 1u8z_A RAS-related protein RAL 99.2 1.3E-11 4.4E-16 104.5 7.0 46 25-71 5-50 (168)
104 3cph_A RAS-related protein SEC 99.2 2.9E-11 9.8E-16 107.3 9.4 154 22-253 18-172 (213)
105 1z2a_A RAS-related protein RAB 99.2 4.4E-11 1.5E-15 101.5 10.1 152 24-253 5-157 (168)
106 1vg8_A RAS-related protein RAB 99.2 7.4E-11 2.5E-15 104.1 11.5 157 24-253 8-165 (207)
107 2bov_A RAla, RAS-related prote 99.2 1.9E-11 6.5E-16 107.7 7.6 59 24-98 14-72 (206)
108 3cbq_A GTP-binding protein REM 99.2 8.1E-12 2.8E-16 110.3 5.2 48 25-72 24-71 (195)
109 2gf9_A RAS-related protein RAB 99.2 5.1E-11 1.7E-15 103.9 10.2 49 202-253 127-175 (189)
110 2nzj_A GTP-binding protein REM 99.2 5.3E-11 1.8E-15 101.8 9.8 45 25-71 5-50 (175)
111 2bme_A RAB4A, RAS-related prot 99.2 3.4E-11 1.2E-15 104.3 8.7 153 24-253 10-163 (186)
112 3geh_A MNME, tRNA modification 99.2 1E-11 3.4E-16 124.3 5.8 61 22-99 222-283 (462)
113 2a9k_A RAS-related protein RAL 99.2 2.3E-11 7.7E-16 105.2 7.2 46 25-71 19-64 (187)
114 1c1y_A RAS-related protein RAP 99.2 1.9E-11 6.4E-16 103.7 6.2 51 201-253 107-157 (167)
115 2fu5_C RAS-related protein RAB 99.2 1.8E-11 6.1E-16 106.0 6.2 153 24-253 8-161 (183)
116 2o52_A RAS-related protein RAB 99.2 3.9E-11 1.3E-15 106.1 8.4 155 22-253 23-178 (200)
117 1kao_A RAP2A; GTP-binding prot 99.2 4.2E-11 1.4E-15 101.2 8.2 49 202-253 108-156 (167)
118 2ew1_A RAS-related protein RAB 99.2 4.9E-11 1.7E-15 105.9 8.9 48 24-71 26-73 (201)
119 3sop_A Neuronal-specific septi 99.2 1.4E-11 4.6E-16 115.0 5.1 67 24-101 2-73 (270)
120 2il1_A RAB12; G-protein, GDP, 99.2 1.4E-11 4.9E-16 108.1 5.0 48 23-70 25-72 (192)
121 3t5d_A Septin-7; GTP-binding p 99.2 3.5E-11 1.2E-15 112.2 7.6 64 24-100 8-77 (274)
122 3ux8_A Excinuclease ABC, A sub 99.2 8.1E-13 2.8E-17 138.4 -4.0 65 120-186 218-293 (670)
123 2fn4_A P23, RAS-related protei 99.2 5.6E-11 1.9E-15 102.1 8.2 58 25-98 10-67 (181)
124 3cpj_B GTP-binding protein YPT 99.2 1.1E-10 3.7E-15 104.9 10.4 153 24-253 13-166 (223)
125 3ihw_A Centg3; RAS, centaurin, 99.2 1.1E-10 3.8E-15 101.9 10.1 53 201-253 118-170 (184)
126 2oil_A CATX-8, RAS-related pro 99.2 7.1E-11 2.4E-15 103.3 8.6 49 202-253 130-178 (193)
127 2g6b_A RAS-related protein RAB 99.2 1E-10 3.4E-15 100.7 9.5 154 23-253 9-164 (180)
128 1x3s_A RAS-related protein RAB 99.2 6.2E-11 2.1E-15 103.3 8.1 153 24-253 15-168 (195)
129 3dz8_A RAS-related protein RAB 99.2 3.2E-11 1.1E-15 105.5 6.3 49 202-253 128-176 (191)
130 1zbd_A Rabphilin-3A; G protein 99.1 8.8E-11 3E-15 103.5 8.5 49 202-253 113-161 (203)
131 1f6b_A SAR1; gtpases, N-termin 99.1 1.3E-10 4.3E-15 102.7 9.5 88 16-123 14-105 (198)
132 1znw_A Guanylate kinase, GMP k 99.1 4.1E-11 1.4E-15 106.9 6.3 52 121-175 140-201 (207)
133 3con_A GTPase NRAS; structural 99.1 2.4E-10 8.1E-15 99.5 11.1 151 25-253 22-173 (190)
134 1svi_A GTP-binding protein YSX 99.1 1.5E-10 5.2E-15 101.1 9.9 56 24-99 23-80 (195)
135 2y8e_A RAB-protein 6, GH09086P 99.1 1.7E-10 5.7E-15 98.9 9.7 59 25-98 15-73 (179)
136 2dyk_A GTP-binding protein; GT 99.1 1.2E-10 4.2E-15 98.1 8.6 58 25-99 2-60 (161)
137 3bc1_A RAS-related protein RAB 99.1 1.2E-10 4.2E-15 101.1 8.8 50 201-253 126-175 (195)
138 2iwr_A Centaurin gamma 1; ANK 99.1 1E-10 3.5E-15 100.7 8.2 52 202-253 108-159 (178)
139 1m2o_B GTP-binding protein SAR 99.1 1.4E-10 4.9E-15 101.6 9.2 88 16-123 12-103 (190)
140 1z0f_A RAB14, member RAS oncog 99.1 8.8E-11 3E-15 100.6 7.6 49 202-253 120-168 (179)
141 2f9l_A RAB11B, member RAS onco 99.1 1.6E-10 5.4E-15 101.9 9.4 48 25-72 6-53 (199)
142 2hjg_A GTP-binding protein ENG 99.1 9.3E-12 3.2E-16 123.8 1.4 58 25-99 4-62 (436)
143 2g3y_A GTP-binding protein GEM 99.1 3.1E-10 1.1E-14 101.8 11.1 48 25-72 38-86 (211)
144 2hxs_A RAB-26, RAS-related pro 99.1 5E-11 1.7E-15 102.4 5.5 61 24-98 6-66 (178)
145 3lxw_A GTPase IMAP family memb 99.1 1.8E-10 6.1E-15 105.8 9.3 60 23-99 20-81 (247)
146 3kkq_A RAS-related protein M-R 99.1 9.7E-11 3.3E-15 101.3 7.0 50 201-253 122-172 (183)
147 2qnr_A Septin-2, protein NEDD5 99.1 1.1E-10 3.9E-15 110.4 8.0 73 14-99 10-87 (301)
148 3lxx_A GTPase IMAP family memb 99.1 5.5E-10 1.9E-14 101.6 12.3 60 24-100 29-90 (239)
149 1oix_A RAS-related protein RAB 99.1 1.7E-10 6E-15 101.2 8.4 49 24-72 29-77 (191)
150 3szr_A Interferon-induced GTP- 99.1 6.9E-12 2.4E-16 129.7 -0.9 114 27-153 48-181 (608)
151 1z06_A RAS-related protein RAB 99.1 1.2E-10 4.1E-15 101.5 7.2 46 25-70 21-66 (189)
152 2iw3_A Elongation factor 3A; a 99.1 1.4E-12 4.9E-17 139.8 -6.3 59 120-184 917-980 (986)
153 3l0i_B RAS-related protein RAB 99.1 3.9E-12 1.3E-16 112.2 -2.6 85 24-123 33-118 (199)
154 3reg_A RHO-like small GTPase; 99.1 2.7E-10 9.4E-15 99.7 9.2 155 23-253 22-178 (194)
155 2q3h_A RAS homolog gene family 99.1 3.2E-10 1.1E-14 99.7 9.6 86 22-123 18-104 (201)
156 2efe_B Small GTP-binding prote 99.1 5.5E-10 1.9E-14 96.0 11.0 47 202-251 117-163 (181)
157 2yc2_C IFT27, small RAB-relate 99.1 1.4E-10 4.8E-15 102.1 7.3 158 23-253 19-182 (208)
158 2atv_A RERG, RAS-like estrogen 99.1 3E-10 1E-14 99.6 9.4 49 202-253 132-181 (196)
159 1z0j_A RAB-22, RAS-related pro 99.1 2E-10 6.9E-15 97.5 7.9 48 202-252 111-158 (170)
160 2cxx_A Probable GTP-binding pr 99.1 8.7E-10 3E-14 95.5 12.0 39 25-63 2-40 (190)
161 4dcu_A GTP-binding protein ENG 99.1 6.7E-12 2.3E-16 125.6 -1.8 58 25-99 24-82 (456)
162 1ek0_A Protein (GTP-binding pr 99.1 1.9E-10 6.3E-15 97.6 7.4 46 25-70 4-49 (170)
163 1upt_A ARL1, ADP-ribosylation 99.1 2.5E-10 8.6E-15 97.1 8.1 82 22-123 5-87 (171)
164 1r2q_A RAS-related protein RAB 99.1 2E-10 6.9E-15 97.4 7.1 48 202-252 111-158 (170)
165 2f7s_A C25KG, RAS-related prot 99.1 4.5E-11 1.5E-15 106.6 3.1 50 201-253 140-189 (217)
166 1ksh_A ARF-like protein 2; sma 99.1 1.7E-10 5.8E-15 100.1 6.6 81 23-123 17-98 (186)
167 3c5c_A RAS-like protein 12; GD 99.1 3.3E-10 1.1E-14 98.9 8.4 49 202-253 127-176 (187)
168 4bas_A ADP-ribosylation factor 99.1 4E-10 1.4E-14 98.6 8.9 27 24-50 17-43 (199)
169 2hup_A RAS-related protein RAB 99.1 1.9E-10 6.6E-15 101.7 6.9 49 202-253 134-183 (201)
170 2cjw_A GTP-binding protein GEM 99.0 4.2E-10 1.4E-14 98.9 8.8 48 25-72 7-55 (192)
171 2fg5_A RAB-22B, RAS-related pr 99.0 4E-10 1.4E-14 98.7 8.3 47 202-251 128-174 (192)
172 2ce2_X GTPase HRAS; signaling 99.0 2.6E-10 8.9E-15 96.0 6.8 48 202-253 108-155 (166)
173 1mh1_A RAC1; GTP-binding, GTPa 99.0 7E-10 2.4E-14 95.7 9.4 83 25-123 6-89 (186)
174 3bwd_D RAC-like GTP-binding pr 99.0 2.1E-10 7.3E-15 98.7 6.1 34 24-58 8-41 (182)
175 4gzl_A RAS-related C3 botulinu 99.0 3.2E-10 1.1E-14 100.5 7.1 85 23-123 29-114 (204)
176 2j0v_A RAC-like GTP-binding pr 99.0 7.4E-10 2.5E-14 98.3 9.5 84 24-123 9-93 (212)
177 2gco_A H9, RHO-related GTP-bin 99.0 1.6E-09 5.5E-14 95.5 11.3 58 25-98 26-83 (201)
178 2h57_A ADP-ribosylation factor 99.0 4.8E-10 1.6E-14 97.8 7.7 58 23-98 20-77 (190)
179 1moz_A ARL1, ADP-ribosylation 99.0 1E-10 3.4E-15 101.1 3.3 26 23-48 17-42 (183)
180 2atx_A Small GTP binding prote 99.0 1.8E-09 6.1E-14 94.3 11.2 83 25-123 19-102 (194)
181 2npi_A Protein CLP1; CLP1-PCF1 99.0 1.6E-11 5.4E-16 122.8 -2.5 142 22-185 136-332 (460)
182 1r8s_A ADP-ribosylation factor 99.0 1.8E-10 6.2E-15 97.5 4.3 23 26-48 2-24 (164)
183 2p5s_A RAS and EF-hand domain 99.0 3.6E-10 1.2E-14 99.5 6.1 26 24-49 28-53 (199)
184 2iw3_A Elongation factor 3A; a 99.0 7.7E-12 2.6E-16 134.2 -5.7 61 120-186 564-630 (986)
185 2x77_A ADP-ribosylation factor 99.0 3.5E-10 1.2E-14 98.5 5.7 81 23-123 21-102 (189)
186 1zj6_A ADP-ribosylation factor 99.0 3E-10 1E-14 98.8 5.0 56 23-98 15-70 (187)
187 2fv8_A H6, RHO-related GTP-bin 99.0 2.1E-09 7.1E-14 95.3 10.2 59 25-99 26-84 (207)
188 1m7b_A RND3/RHOE small GTP-bin 99.0 2.2E-09 7.5E-14 93.1 9.9 25 24-48 7-31 (184)
189 3ux8_A Excinuclease ABC, A sub 99.0 7.8E-12 2.7E-16 130.9 -7.0 59 126-186 566-635 (670)
190 1fzq_A ADP-ribosylation factor 99.0 8.7E-11 3E-15 102.1 0.8 25 23-47 15-39 (181)
191 2j1l_A RHO-related GTP-binding 99.0 1.4E-09 4.9E-14 97.0 8.6 60 24-99 34-93 (214)
192 2erx_A GTP-binding protein DI- 98.9 4E-10 1.4E-14 95.8 4.3 26 24-49 3-28 (172)
193 2h17_A ADP-ribosylation factor 98.9 3.6E-10 1.2E-14 97.9 4.0 27 23-49 20-46 (181)
194 3q3j_B RHO-related GTP-binding 98.9 4.4E-09 1.5E-13 93.9 11.2 86 22-123 25-111 (214)
195 1zd9_A ADP-ribosylation factor 98.9 1.2E-09 4E-14 95.3 7.0 26 24-49 22-47 (188)
196 2b6h_A ADP-ribosylation factor 98.9 1.9E-10 6.5E-15 101.0 1.6 25 24-48 29-53 (192)
197 3lvq_E ARF-GAP with SH3 domain 98.9 1E-09 3.6E-14 110.6 7.2 80 24-123 322-402 (497)
198 1gwn_A RHO-related GTP-binding 98.9 3.6E-09 1.2E-13 94.0 9.9 26 24-49 28-53 (205)
199 3r7w_A Gtpase1, GTP-binding pr 98.9 8.3E-10 2.8E-14 104.6 6.0 60 24-99 3-63 (307)
200 3qq5_A Small GTP-binding prote 98.9 1.9E-10 6.5E-15 113.7 1.5 60 25-100 35-95 (423)
201 4djt_A GTP-binding nuclear pro 98.9 8.9E-10 3E-14 98.2 5.0 49 202-253 117-165 (218)
202 3izq_1 HBS1P, elongation facto 98.9 2.3E-09 8E-14 110.8 8.6 61 22-99 165-256 (611)
203 2qag_C Septin-7; cell cycle, c 98.9 2.2E-09 7.4E-14 105.9 7.9 34 14-49 23-56 (418)
204 3t1o_A Gliding protein MGLA; G 98.9 4.4E-09 1.5E-13 91.4 8.6 48 201-253 134-182 (198)
205 2wkq_A NPH1-1, RAS-related C3 98.9 4.6E-09 1.6E-13 99.4 9.4 86 22-123 153-239 (332)
206 1pui_A ENGB, probable GTP-bind 98.9 1.1E-09 3.8E-14 96.9 4.6 44 16-59 16-63 (210)
207 4gp7_A Metallophosphoesterase; 98.9 8.6E-11 2.9E-15 101.8 -2.6 25 21-45 6-30 (171)
208 3th5_A RAS-related C3 botulinu 98.4 2.2E-10 7.7E-15 101.1 0.0 61 23-99 29-89 (204)
209 2gf0_A GTP-binding protein DI- 98.9 1.8E-09 6.1E-14 94.4 5.4 46 202-251 114-159 (199)
210 2xtp_A GTPase IMAP family memb 98.9 2.6E-08 8.8E-13 91.5 13.4 60 24-100 22-83 (260)
211 3gj0_A GTP-binding nuclear pro 98.8 8.6E-10 3E-14 98.7 2.8 39 23-61 14-54 (221)
212 3izy_P Translation initiation 98.8 1E-09 3.5E-14 111.4 3.2 59 23-98 3-62 (537)
213 1wb1_A Translation elongation 98.8 1.8E-09 6.2E-14 108.6 4.9 58 24-98 19-83 (482)
214 3hvz_A Uncharacterized protein 98.8 4.5E-09 1.5E-13 78.7 5.4 60 284-365 7-66 (78)
215 3o47_A ADP-ribosylation factor 98.8 6.2E-10 2.1E-14 106.6 0.7 55 24-98 165-219 (329)
216 4dkx_A RAS-related protein RAB 98.8 6.6E-09 2.3E-13 93.5 7.2 49 202-253 118-166 (216)
217 1z6g_A Guanylate kinase; struc 98.8 2.5E-09 8.7E-14 96.2 4.1 32 16-47 11-46 (218)
218 3p26_A Elongation factor 1 alp 98.8 2.2E-09 7.4E-14 108.1 3.7 54 202-255 171-230 (483)
219 3dpu_A RAB family protein; roc 98.8 2.3E-09 8E-14 109.2 3.6 49 202-253 150-198 (535)
220 2qag_B Septin-6, protein NEDD5 98.8 1E-08 3.5E-13 101.0 7.5 31 18-48 30-66 (427)
221 2ehv_A Hypothetical protein PH 98.7 2.6E-10 9E-15 103.7 -3.8 44 17-71 22-68 (251)
222 2dpy_A FLII, flagellum-specifi 98.7 1.3E-09 4.4E-14 108.3 0.8 144 15-184 145-337 (438)
223 2www_A Methylmalonic aciduria 98.7 8.3E-10 2.9E-14 106.6 -0.9 25 23-47 73-97 (349)
224 2eyu_A Twitching motility prot 98.7 1.5E-09 5E-14 100.7 0.5 49 16-75 15-66 (261)
225 3j2k_7 ERF3, eukaryotic polype 98.7 6.5E-09 2.2E-13 103.4 5.1 26 23-48 16-41 (439)
226 2qag_A Septin-2, protein NEDD5 98.7 4.6E-09 1.6E-13 101.8 3.8 61 186-249 160-220 (361)
227 2pt7_A CAG-ALFA; ATPase, prote 98.7 1.9E-09 6.6E-14 103.2 0.9 45 17-72 160-208 (330)
228 2vf7_A UVRA2, excinuclease ABC 98.7 1.9E-10 6.4E-15 122.3 -7.1 58 126-185 753-821 (842)
229 1htw_A HI0065; nucleotide-bind 98.7 4.5E-09 1.6E-13 89.9 2.9 47 15-73 20-70 (158)
230 2aka_B Dynamin-1; fusion prote 98.7 9.7E-10 3.3E-14 103.0 -1.9 25 25-49 27-51 (299)
231 2zej_A Dardarin, leucine-rich 98.7 4.3E-09 1.5E-13 91.4 2.1 23 25-47 3-25 (184)
232 2obl_A ESCN; ATPase, hydrolase 98.6 5E-09 1.7E-13 101.0 1.3 144 14-184 58-248 (347)
233 3sjy_A Translation initiation 98.6 3.7E-09 1.3E-13 104.0 0.2 27 23-49 7-33 (403)
234 3t34_A Dynamin-related protein 98.6 7.7E-08 2.6E-12 93.0 9.6 48 15-62 24-72 (360)
235 2fh5_B SR-beta, signal recogni 98.6 9.2E-08 3.2E-12 84.7 8.5 44 24-70 7-50 (214)
236 1s0u_A EIF-2-gamma, translatio 98.6 7.5E-08 2.6E-12 94.7 8.7 52 202-253 135-188 (408)
237 1jwy_B Dynamin A GTPase domain 98.6 7.1E-08 2.4E-12 91.0 7.6 25 25-49 25-49 (315)
238 2x2e_A Dynamin-1; nitration, h 98.6 1.9E-08 6.4E-13 97.1 3.5 25 25-49 32-56 (353)
239 2j69_A Bacterial dynamin-like 98.6 3.4E-08 1.2E-12 103.6 5.5 36 22-57 67-103 (695)
240 3c5h_A Glucocorticoid receptor 98.6 5.9E-08 2E-12 89.2 6.4 48 202-253 198-245 (255)
241 1zun_B Sulfate adenylate trans 98.6 3.9E-08 1.3E-12 97.6 5.0 52 203-254 158-215 (434)
242 3mca_A HBS1, elongation factor 98.6 3E-08 1E-12 102.2 4.2 23 25-47 178-200 (592)
243 1zo1_I IF2, translation initia 98.5 1.3E-08 4.3E-13 102.6 1.2 59 24-99 4-62 (501)
244 3llu_A RAS-related GTP-binding 98.5 6.4E-08 2.2E-12 84.8 5.5 25 23-47 19-43 (196)
245 3b85_A Phosphate starvation-in 98.5 4.8E-09 1.6E-13 93.9 -2.9 35 13-47 11-45 (208)
246 2c78_A Elongation factor TU-A; 98.5 4.8E-08 1.6E-12 96.0 3.9 25 23-47 10-34 (405)
247 3pih_A Uvrabc system protein A 98.5 5.1E-09 1.8E-13 112.2 -3.4 59 126-186 828-897 (916)
248 1kk1_A EIF2gamma; initiation o 98.5 4.3E-08 1.5E-12 96.5 3.2 42 25-66 11-55 (410)
249 2p67_A LAO/AO transport system 98.5 1.6E-08 5.6E-13 97.2 0.0 26 22-47 54-79 (341)
250 2r6f_A Excinuclease ABC subuni 98.5 5.9E-09 2E-13 111.4 -3.3 58 126-185 868-936 (972)
251 1jny_A EF-1-alpha, elongation 98.5 6E-08 2.1E-12 96.2 4.1 53 203-255 145-205 (435)
252 3tr5_A RF-3, peptide chain rel 98.4 3.8E-08 1.3E-12 100.0 1.7 23 23-45 12-34 (528)
253 2ygr_A Uvrabc system protein A 98.4 6E-09 2.1E-13 111.7 -6.1 58 126-185 886-954 (993)
254 2elf_A Protein translation elo 98.4 5.8E-08 2E-12 94.4 1.2 57 16-98 14-70 (370)
255 1puj_A YLQF, conserved hypothe 98.4 1.1E-07 3.9E-12 88.9 3.1 58 23-100 119-177 (282)
256 3p32_A Probable GTPase RV1496/ 98.4 1.6E-07 5.5E-12 90.7 4.2 53 201-253 216-274 (355)
257 3jvv_A Twitching mobility prot 98.4 4.6E-08 1.6E-12 94.5 0.2 35 23-68 122-157 (356)
258 4aby_A DNA repair protein RECN 98.4 2.3E-08 7.8E-13 98.2 -2.3 58 122-182 313-379 (415)
259 1r5b_A Eukaryotic peptide chai 98.3 3.5E-07 1.2E-11 91.6 6.0 53 202-254 180-243 (467)
260 1f60_A Elongation factor EEF1A 98.3 9.3E-08 3.2E-12 95.5 1.7 51 204-254 147-203 (458)
261 2ged_A SR-beta, signal recogni 98.3 4.1E-07 1.4E-11 78.9 5.6 27 23-49 47-73 (193)
262 1zp6_A Hypothetical protein AT 98.3 3.4E-07 1.2E-11 79.7 4.9 40 20-72 5-44 (191)
263 3def_A T7I23.11 protein; chlor 98.3 2.8E-07 9.7E-12 84.9 4.6 60 24-100 36-96 (262)
264 3zvr_A Dynamin-1; hydrolase, D 98.3 3.5E-07 1.2E-11 96.0 5.4 38 25-63 52-90 (772)
265 1nrj_B SR-beta, signal recogni 98.3 1E-07 3.5E-12 84.7 0.5 25 24-48 12-36 (218)
266 3euj_A Chromosome partition pr 98.3 1.7E-07 5.6E-12 93.9 2.0 50 15-75 17-69 (483)
267 1lvg_A Guanylate kinase, GMP k 98.3 2.1E-07 7.3E-12 82.2 2.4 48 23-72 3-52 (198)
268 2ewv_A Twitching motility prot 98.3 1.1E-07 3.9E-12 92.4 -0.1 46 17-73 127-175 (372)
269 1d2e_A Elongation factor TU (E 98.2 9.5E-07 3.3E-11 86.5 5.9 24 24-47 3-26 (397)
270 1f5n_A Interferon-induced guan 98.2 5.5E-07 1.9E-11 92.2 4.0 73 17-100 30-103 (592)
271 2w0m_A SSO2452; RECA, SSPF, un 98.2 1.1E-07 3.8E-12 85.0 -1.0 40 20-70 19-58 (235)
272 2gza_A Type IV secretion syste 98.2 6.1E-07 2.1E-11 86.8 4.1 39 23-72 174-212 (361)
273 3a00_A Guanylate kinase, GMP k 98.2 2.8E-07 9.5E-12 80.4 1.5 42 25-66 2-45 (186)
274 3b9q_A Chloroplast SRP recepto 98.2 3.5E-07 1.2E-11 86.4 2.2 42 21-73 97-138 (302)
275 1s96_A Guanylate kinase, GMP k 98.2 4.7E-07 1.6E-11 81.5 2.7 29 20-48 12-40 (219)
276 2xex_A Elongation factor G; GT 98.2 4.4E-07 1.5E-11 95.1 2.8 58 25-99 11-86 (693)
277 1g7s_A Translation initiation 98.2 2.6E-06 8.8E-11 87.6 8.4 24 25-48 6-29 (594)
278 3thx_A DNA mismatch repair pro 98.2 5.4E-08 1.9E-12 104.6 -4.2 138 14-184 648-806 (934)
279 1sq5_A Pantothenate kinase; P- 98.2 1.1E-06 3.6E-11 83.2 5.1 67 22-100 78-153 (308)
280 1u0l_A Probable GTPase ENGC; p 98.2 6.5E-07 2.2E-11 84.4 3.6 43 21-74 166-211 (301)
281 2wsm_A Hydrogenase expression/ 98.2 1E-06 3.4E-11 78.4 4.6 50 202-253 154-204 (221)
282 3c8u_A Fructokinase; YP_612366 98.2 6.1E-07 2.1E-11 79.6 3.1 41 21-72 19-62 (208)
283 2qpt_A EH domain-containing pr 98.2 1.5E-06 5.1E-11 88.7 6.3 36 24-59 65-103 (550)
284 1h65_A Chloroplast outer envel 98.2 1E-06 3.5E-11 81.5 4.6 60 24-100 39-99 (270)
285 3ec1_A YQEH GTPase; atnos1, at 98.2 2.3E-07 7.8E-12 90.1 -0.3 58 23-100 161-224 (369)
286 3e70_C DPA, signal recognition 98.1 6.2E-07 2.1E-11 85.6 2.4 41 22-73 127-167 (328)
287 1t9h_A YLOQ, probable GTPase E 98.1 3.9E-07 1.3E-11 86.1 0.9 44 18-72 167-213 (307)
288 4a74_A DNA repair and recombin 98.1 1.3E-06 4.3E-11 78.1 4.1 29 19-47 20-48 (231)
289 1rj9_A FTSY, signal recognitio 98.1 8.2E-07 2.8E-11 83.9 2.8 40 23-73 101-140 (304)
290 2i3b_A HCR-ntpase, human cance 98.1 3.3E-07 1.1E-11 80.6 -0.1 37 24-73 1-37 (189)
291 2v9p_A Replication protein E1; 98.1 1.2E-06 4.2E-11 82.6 3.9 32 16-47 114-149 (305)
292 2qm8_A GTPase/ATPase; G protei 98.1 6E-07 2.1E-11 86.1 1.7 48 15-73 42-93 (337)
293 2ywe_A GTP-binding protein LEP 98.1 1.1E-06 3.7E-11 90.3 3.5 23 25-47 7-29 (600)
294 2og2_A Putative signal recogni 98.1 7.9E-07 2.7E-11 85.8 2.2 42 21-73 154-195 (359)
295 3ney_A 55 kDa erythrocyte memb 98.1 1.7E-06 5.7E-11 76.5 4.1 48 23-72 18-67 (197)
296 1kgd_A CASK, peripheral plasma 98.1 1.6E-06 5.4E-11 75.2 3.8 43 23-65 4-48 (180)
297 3cnl_A YLQF, putative uncharac 98.1 1.2E-06 4.1E-11 81.0 3.1 64 17-100 91-156 (262)
298 3lnc_A Guanylate kinase, GMP k 98.1 7.9E-07 2.7E-11 80.1 1.7 50 17-66 16-71 (231)
299 3h2y_A GTPase family protein; 98.1 4.3E-07 1.5E-11 88.2 -0.3 58 23-100 159-223 (368)
300 2yv5_A YJEQ protein; hydrolase 98.1 1.2E-06 4.2E-11 82.6 2.9 44 18-73 159-205 (302)
301 2rcn_A Probable GTPase ENGC; Y 98.1 1.5E-06 5.2E-11 83.7 3.4 37 22-69 213-250 (358)
302 2h5e_A Peptide chain release f 98.1 3.9E-06 1.3E-10 85.2 6.5 26 22-47 11-36 (529)
303 2jeo_A Uridine-cytidine kinase 98.0 1.6E-06 5.4E-11 79.0 2.9 35 13-47 10-48 (245)
304 1tf7_A KAIC; homohexamer, hexa 98.0 1.2E-06 4.2E-11 88.8 2.3 51 12-73 22-79 (525)
305 3thx_B DNA mismatch repair pro 98.0 1.5E-06 5E-11 93.3 2.5 34 14-47 659-696 (918)
306 2oap_1 GSPE-2, type II secreti 98.0 2.4E-06 8.2E-11 86.4 3.9 39 23-72 259-297 (511)
307 1qhl_A Protein (cell division 98.0 2.1E-07 7.2E-12 84.2 -3.5 37 26-73 29-65 (227)
308 1ye8_A Protein THEP1, hypothet 98.0 2.3E-06 8E-11 74.3 3.3 23 25-47 1-23 (178)
309 3cb4_D GTP-binding protein LEP 98.0 6.1E-07 2.1E-11 92.3 -0.7 23 25-47 5-27 (599)
310 1pzn_A RAD51, DNA repair and r 98.0 1.4E-06 4.9E-11 83.8 1.9 46 19-73 126-176 (349)
311 2yhs_A FTSY, cell division pro 98.0 1.6E-06 5.6E-11 86.6 2.3 42 21-73 290-331 (503)
312 2dy1_A Elongation factor G; tr 98.0 4.3E-05 1.5E-09 79.7 13.0 27 21-47 6-32 (665)
313 2o8b_B DNA mismatch repair pro 98.0 1.7E-07 5.7E-12 102.0 -5.5 58 120-181 866-930 (1022)
314 3tr0_A Guanylate kinase, GMP k 98.0 3.4E-06 1.2E-10 74.0 3.6 26 22-47 5-30 (205)
315 1dar_A EF-G, elongation factor 97.9 1.1E-05 3.6E-10 84.6 7.4 23 24-46 12-34 (691)
316 3aez_A Pantothenate kinase; tr 97.9 2.7E-06 9.4E-11 80.6 2.5 27 21-47 87-113 (312)
317 3avx_A Elongation factor TS, e 97.9 4.8E-06 1.7E-10 90.5 4.5 24 24-47 296-319 (1289)
318 2f1r_A Molybdopterin-guanine d 97.9 1.7E-06 5.7E-11 74.8 0.8 38 25-73 3-43 (171)
319 3tau_A Guanylate kinase, GMP k 97.9 7.1E-06 2.4E-10 72.8 4.3 43 23-65 7-51 (208)
320 1lw7_A Transcriptional regulat 97.9 2.2E-06 7.4E-11 82.9 0.5 29 24-63 170-198 (365)
321 1p9r_A General secretion pathw 97.9 4.6E-06 1.6E-10 82.2 2.8 46 17-73 158-205 (418)
322 2j41_A Guanylate kinase; GMP, 97.9 9.5E-06 3.2E-10 71.1 4.4 27 21-47 3-29 (207)
323 2bdt_A BH3686; alpha-beta prot 97.8 4.8E-06 1.6E-10 72.4 2.0 35 24-72 2-36 (189)
324 1tf7_A KAIC; homohexamer, hexa 97.8 1.8E-07 6.2E-12 95.0 -8.6 28 20-47 277-304 (525)
325 3asz_A Uridine kinase; cytidin 97.8 9.8E-06 3.3E-10 71.6 3.3 26 22-47 4-29 (211)
326 2bbw_A Adenylate kinase 4, AK4 97.8 5.5E-06 1.9E-10 75.3 1.6 36 24-70 27-65 (246)
327 4eun_A Thermoresistant glucoki 97.8 9E-06 3.1E-10 71.5 2.8 35 23-72 28-62 (200)
328 4e22_A Cytidylate kinase; P-lo 97.7 4.9E-06 1.7E-10 76.2 0.7 41 16-67 18-62 (252)
329 2x8a_A Nuclear valosin-contain 97.7 1.3E-05 4.4E-10 74.4 3.1 46 15-73 33-80 (274)
330 2kjq_A DNAA-related protein; s 97.7 1E-05 3.5E-10 68.1 1.8 31 16-47 29-59 (149)
331 1nij_A Hypothetical protein YJ 97.7 6.2E-06 2.1E-10 78.2 0.4 45 26-73 6-50 (318)
332 1cr0_A DNA primase/helicase; R 97.6 1.4E-05 4.9E-10 74.6 2.0 44 14-68 21-69 (296)
333 1n0w_A DNA repair protein RAD5 97.6 4.1E-05 1.4E-09 68.7 4.5 45 19-72 19-68 (243)
334 3uie_A Adenylyl-sulfate kinase 97.6 9.2E-06 3.1E-10 71.4 0.2 26 22-47 23-48 (200)
335 1rz3_A Hypothetical protein rb 97.6 1.7E-05 5.7E-10 69.9 1.5 39 21-70 19-57 (201)
336 3kta_A Chromosome segregation 97.6 3.3E-05 1.1E-09 66.4 3.3 22 26-47 28-49 (182)
337 1kag_A SKI, shikimate kinase I 97.6 3.5E-05 1.2E-09 65.6 3.2 25 23-47 3-27 (173)
338 1ex7_A Guanylate kinase; subst 97.5 3E-05 1E-09 67.8 2.5 45 26-72 3-49 (186)
339 3ec2_A DNA replication protein 97.5 2.3E-05 8E-10 67.4 1.0 25 23-47 37-61 (180)
340 1ewq_A DNA mismatch repair pro 97.5 5E-05 1.7E-09 80.2 3.4 34 14-47 565-599 (765)
341 3cr8_A Sulfate adenylyltranfer 97.4 3.9E-05 1.3E-09 78.1 1.5 42 20-72 365-408 (552)
342 2qor_A Guanylate kinase; phosp 97.4 5.5E-05 1.9E-09 66.6 2.0 45 21-65 9-55 (204)
343 2rdo_7 EF-G, elongation factor 97.4 0.00029 9.8E-09 73.9 7.8 23 24-46 10-32 (704)
344 1knq_A Gluconate kinase; ALFA/ 97.4 9.6E-05 3.3E-09 63.0 3.4 24 24-47 8-31 (175)
345 2vp4_A Deoxynucleoside kinase; 97.4 7E-05 2.4E-09 67.3 2.6 27 21-47 17-43 (230)
346 3tqc_A Pantothenate kinase; bi 97.3 7.7E-05 2.6E-09 70.8 3.0 22 26-47 94-115 (321)
347 2qt1_A Nicotinamide riboside k 97.3 0.00013 4.4E-09 64.1 4.0 31 17-47 14-44 (207)
348 1ixz_A ATP-dependent metallopr 97.3 7.7E-05 2.6E-09 67.8 2.0 44 16-72 39-84 (254)
349 3vaa_A Shikimate kinase, SK; s 97.3 0.00011 3.8E-09 64.3 3.0 34 14-47 11-48 (199)
350 1iy2_A ATP-dependent metallopr 97.3 7.4E-05 2.5E-09 69.0 1.7 44 16-72 63-108 (278)
351 1cke_A CK, MSSA, protein (cyti 97.2 0.00017 5.7E-09 64.1 3.6 24 24-47 5-28 (227)
352 1wb9_A DNA mismatch repair pro 97.2 0.00014 4.9E-09 77.1 3.4 34 14-47 594-630 (800)
353 1jjv_A Dephospho-COA kinase; P 97.2 0.00022 7.6E-09 62.5 3.6 23 25-47 3-25 (206)
354 1nlf_A Regulatory protein REPA 97.1 0.00022 7.4E-09 65.9 3.6 33 15-47 21-53 (279)
355 2if2_A Dephospho-COA kinase; a 97.1 0.00022 7.5E-09 62.4 3.1 22 26-47 3-24 (204)
356 2cvh_A DNA repair and recombin 97.1 0.00026 8.9E-09 62.3 3.7 28 19-46 15-42 (220)
357 3qf7_A RAD50; ABC-ATPase, ATPa 97.1 0.00027 9.1E-09 68.3 3.4 21 26-46 25-45 (365)
358 1vma_A Cell division protein F 97.0 0.00016 5.4E-09 68.2 1.6 40 22-72 102-141 (306)
359 3q5d_A Atlastin-1; G protein, 97.0 0.00026 9E-09 70.0 3.0 44 26-69 69-127 (447)
360 1f2t_A RAD50 ABC-ATPase; DNA d 97.0 0.00034 1.1E-08 58.7 3.2 20 26-45 25-44 (149)
361 1n0u_A EF-2, elongation factor 97.0 0.00015 5.2E-09 77.5 0.9 23 25-47 20-42 (842)
362 1svm_A Large T antigen; AAA+ f 96.9 0.00041 1.4E-08 67.2 3.7 27 21-47 166-192 (377)
363 3lda_A DNA repair protein RAD5 96.9 0.00049 1.7E-08 67.2 4.2 27 19-45 173-199 (400)
364 1w1w_A Structural maintenance 96.9 0.00038 1.3E-08 68.6 3.4 27 22-48 24-50 (430)
365 1m7g_A Adenylylsulfate kinase; 96.9 0.00025 8.4E-09 62.7 1.9 39 21-70 22-62 (211)
366 2px0_A Flagellar biosynthesis 96.9 0.00021 7.2E-09 67.0 1.4 25 23-47 104-128 (296)
367 1in4_A RUVB, holliday junction 96.9 0.00022 7.6E-09 67.8 1.6 23 25-47 52-74 (334)
368 1sxj_E Activator 1 40 kDa subu 96.9 0.00028 9.5E-09 67.1 2.1 35 27-72 39-74 (354)
369 2pez_A Bifunctional 3'-phospho 96.8 0.00065 2.2E-08 58.1 3.4 25 23-47 4-28 (179)
370 2o5v_A DNA replication and rep 96.8 0.00054 1.8E-08 66.0 3.2 22 26-47 28-49 (359)
371 3t61_A Gluconokinase; PSI-biol 96.8 0.00062 2.1E-08 59.5 3.3 23 25-47 19-41 (202)
372 2kmm_A Guanosine-3',5'-BIS(dip 96.8 0.0032 1.1E-07 45.7 6.6 55 296-369 11-65 (73)
373 2yvu_A Probable adenylyl-sulfa 96.7 0.00053 1.8E-08 59.0 2.3 25 23-47 12-36 (186)
374 3nwj_A ATSK2; P loop, shikimat 96.7 0.0006 2E-08 62.3 2.6 34 14-47 31-71 (250)
375 3cm0_A Adenylate kinase; ATP-b 96.7 0.00081 2.8E-08 57.6 3.2 25 23-47 3-27 (186)
376 3m6a_A ATP-dependent protease 96.7 0.00086 2.9E-08 68.1 3.7 36 24-70 108-143 (543)
377 1zu4_A FTSY; GTPase, signal re 96.7 0.00047 1.6E-08 65.3 1.6 40 23-73 104-143 (320)
378 1ls1_A Signal recognition part 96.6 0.00049 1.7E-08 64.4 1.5 40 23-73 97-136 (295)
379 1e69_A Chromosome segregation 96.6 0.00073 2.5E-08 63.9 2.5 26 21-47 22-47 (322)
380 3dm5_A SRP54, signal recogniti 96.6 0.036 1.2E-06 54.6 14.6 24 24-47 100-123 (443)
381 3qks_A DNA double-strand break 96.6 0.0011 3.7E-08 58.4 3.2 20 26-45 25-44 (203)
382 3kb2_A SPBC2 prophage-derived 96.6 0.0011 3.7E-08 55.8 3.1 22 26-47 3-24 (173)
383 3lw7_A Adenylate kinase relate 96.6 0.0012 4.1E-08 55.4 3.3 20 25-44 2-21 (179)
384 1odf_A YGR205W, hypothetical 3 96.5 0.0013 4.3E-08 61.5 3.5 26 22-47 29-54 (290)
385 1np6_A Molybdopterin-guanine d 96.5 0.0014 4.9E-08 56.4 3.5 23 25-47 7-29 (174)
386 1ly1_A Polynucleotide kinase; 96.5 0.0015 5.1E-08 55.4 3.6 22 25-46 3-24 (181)
387 2rhm_A Putative kinase; P-loop 96.5 0.0015 5.3E-08 56.0 3.7 26 22-47 3-28 (193)
388 4eaq_A DTMP kinase, thymidylat 96.5 0.0014 4.8E-08 58.9 3.5 28 20-47 22-49 (229)
389 3qkt_A DNA double-strand break 96.5 0.0012 4.1E-08 62.9 3.2 21 26-46 25-45 (339)
390 2jaq_A Deoxyguanosine kinase; 96.5 0.0016 5.3E-08 56.5 3.4 22 26-47 2-23 (205)
391 3vqt_A RF-3, peptide chain rel 96.4 0.0045 1.5E-07 62.9 7.2 25 21-45 28-52 (548)
392 1qhx_A CPT, protein (chloramph 96.4 0.0018 6.1E-08 55.0 3.7 24 24-47 3-26 (178)
393 2dr3_A UPF0273 protein PH0284; 96.4 0.0015 5.1E-08 58.3 3.2 27 19-45 18-44 (247)
394 1q3t_A Cytidylate kinase; nucl 96.4 0.0017 5.9E-08 58.2 3.5 26 22-47 14-39 (236)
395 2dhr_A FTSH; AAA+ protein, hex 96.4 0.0019 6.3E-08 64.9 4.1 32 16-47 54-87 (499)
396 1y63_A LMAJ004144AAA protein; 96.4 0.0021 7.3E-08 55.3 3.9 24 24-47 10-33 (184)
397 1kht_A Adenylate kinase; phosp 96.4 0.002 6.9E-08 55.1 3.5 24 24-47 3-26 (192)
398 1vht_A Dephospho-COA kinase; s 96.4 0.002 6.7E-08 56.9 3.5 24 24-47 4-27 (218)
399 3k1j_A LON protease, ATP-depen 96.3 0.0022 7.7E-08 65.9 4.3 38 23-71 59-97 (604)
400 2v54_A DTMP kinase, thymidylat 96.3 0.0023 7.9E-08 55.5 3.8 25 23-47 3-27 (204)
401 3fb4_A Adenylate kinase; psych 96.2 0.0023 8E-08 56.2 3.4 23 25-47 1-23 (216)
402 1via_A Shikimate kinase; struc 96.2 0.0023 7.7E-08 54.4 3.2 22 26-47 6-27 (175)
403 3dl0_A Adenylate kinase; phosp 96.2 0.0025 8.4E-08 56.1 3.4 23 25-47 1-23 (216)
404 2iyv_A Shikimate kinase, SK; t 96.2 0.0025 8.7E-08 54.5 3.2 24 24-47 2-25 (184)
405 2plr_A DTMP kinase, probable t 96.2 0.003 1E-07 55.0 3.6 24 24-47 4-27 (213)
406 2wwf_A Thymidilate kinase, put 96.2 0.0032 1.1E-07 54.9 3.8 25 23-47 9-33 (212)
407 2bwj_A Adenylate kinase 5; pho 96.1 0.0021 7.3E-08 55.4 2.4 26 22-47 10-35 (199)
408 1tev_A UMP-CMP kinase; ploop, 96.1 0.0033 1.1E-07 53.9 3.5 24 24-47 3-26 (196)
409 2c95_A Adenylate kinase 1; tra 96.1 0.0035 1.2E-07 53.9 3.6 25 23-47 8-32 (196)
410 1nks_A Adenylate kinase; therm 96.1 0.0029 9.9E-08 54.1 3.0 22 26-47 3-24 (194)
411 3trf_A Shikimate kinase, SK; a 96.0 0.0036 1.2E-07 53.5 3.5 24 24-47 5-28 (185)
412 1uf9_A TT1252 protein; P-loop, 96.0 0.0036 1.2E-07 54.2 3.5 23 25-47 9-31 (203)
413 2cdn_A Adenylate kinase; phosp 96.0 0.0042 1.4E-07 54.0 3.9 25 23-47 19-43 (201)
414 2pt5_A Shikimate kinase, SK; a 96.0 0.0037 1.3E-07 52.4 3.4 23 25-47 1-23 (168)
415 3iij_A Coilin-interacting nucl 96.0 0.0039 1.3E-07 53.1 3.6 24 24-47 11-34 (180)
416 2p5t_B PEZT; postsegregational 96.0 0.0023 8E-08 58.1 2.3 26 22-47 30-55 (253)
417 1gtv_A TMK, thymidylate kinase 96.0 0.0015 5.2E-08 57.1 1.0 22 26-47 2-23 (214)
418 1qf9_A UMP/CMP kinase, protein 96.0 0.0038 1.3E-07 53.3 3.5 25 23-47 5-29 (194)
419 1nn5_A Similar to deoxythymidy 96.0 0.0039 1.3E-07 54.4 3.6 25 23-47 8-32 (215)
420 1aky_A Adenylate kinase; ATP:A 96.0 0.0043 1.5E-07 54.8 3.7 24 24-47 4-27 (220)
421 3r20_A Cytidylate kinase; stru 96.0 0.0041 1.4E-07 56.1 3.5 24 24-47 9-32 (233)
422 2pbr_A DTMP kinase, thymidylat 95.9 0.0041 1.4E-07 53.3 3.4 22 26-47 2-23 (195)
423 2z0h_A DTMP kinase, thymidylat 95.9 0.0041 1.4E-07 53.5 3.4 22 26-47 2-23 (197)
424 3hr8_A Protein RECA; alpha and 95.9 0.0022 7.5E-08 61.6 1.7 28 20-47 57-84 (356)
425 1lv7_A FTSH; alpha/beta domain 95.9 0.0043 1.5E-07 56.2 3.6 23 25-47 46-68 (257)
426 2ze6_A Isopentenyl transferase 95.9 0.0036 1.2E-07 57.0 3.0 22 26-47 3-24 (253)
427 2hf9_A Probable hydrogenase ni 95.9 0.0037 1.3E-07 55.1 3.0 50 202-253 164-214 (226)
428 1zd8_A GTP:AMP phosphotransfer 95.9 0.0042 1.4E-07 55.2 3.4 24 24-47 7-30 (227)
429 1e6c_A Shikimate kinase; phosp 95.9 0.0046 1.6E-07 52.0 3.4 23 25-47 3-25 (173)
430 3ake_A Cytidylate kinase; CMP 95.8 0.0048 1.6E-07 53.6 3.4 22 26-47 4-25 (208)
431 1e4v_A Adenylate kinase; trans 95.8 0.0045 1.5E-07 54.5 3.2 22 26-47 2-23 (214)
432 1zak_A Adenylate kinase; ATP:A 95.8 0.0047 1.6E-07 54.6 3.3 24 24-47 5-28 (222)
433 1xjc_A MOBB protein homolog; s 95.7 0.0051 1.7E-07 52.7 3.0 22 26-47 6-27 (169)
434 3tlx_A Adenylate kinase 2; str 95.7 0.0062 2.1E-07 55.0 3.7 25 23-47 28-52 (243)
435 2xb4_A Adenylate kinase; ATP-b 95.7 0.0058 2E-07 54.3 3.4 22 26-47 2-23 (223)
436 3be4_A Adenylate kinase; malar 95.7 0.0063 2.2E-07 53.7 3.5 24 24-47 5-28 (217)
437 3sr0_A Adenylate kinase; phosp 95.6 0.0064 2.2E-07 53.7 3.4 23 25-47 1-23 (206)
438 1gvn_B Zeta; postsegregational 95.6 0.0058 2E-07 56.8 3.2 24 24-47 33-56 (287)
439 2vli_A Antibiotic resistance p 95.6 0.0046 1.6E-07 52.6 2.3 23 25-47 6-28 (183)
440 1j8m_F SRP54, signal recogniti 95.6 0.0024 8.1E-08 59.8 0.3 38 24-72 98-135 (297)
441 1ukz_A Uridylate kinase; trans 95.5 0.0081 2.8E-07 52.1 3.6 23 25-47 16-38 (203)
442 3a4m_A L-seryl-tRNA(SEC) kinas 95.5 0.0078 2.7E-07 54.9 3.6 23 25-47 5-27 (260)
443 1zuh_A Shikimate kinase; alpha 95.5 0.008 2.7E-07 50.5 3.4 22 26-47 9-30 (168)
444 2ffh_A Protein (FFH); SRP54, s 95.4 0.005 1.7E-07 60.5 2.2 39 23-72 97-135 (425)
445 4ag6_A VIRB4 ATPase, type IV s 95.4 0.0051 1.8E-07 59.5 2.2 25 23-47 34-58 (392)
446 3cf0_A Transitional endoplasmi 95.4 0.0087 3E-07 55.7 3.6 26 22-47 47-72 (301)
447 2ga8_A Hypothetical 39.9 kDa p 95.4 0.0081 2.8E-07 57.5 3.4 21 27-47 27-47 (359)
448 3ice_A Transcription terminati 95.3 0.0099 3.4E-07 57.5 3.5 31 17-47 167-197 (422)
449 1ak2_A Adenylate kinase isoenz 95.2 0.012 4E-07 52.5 3.7 24 24-47 16-39 (233)
450 3auy_A DNA double-strand break 95.2 0.0088 3E-07 57.5 3.0 20 26-45 27-46 (371)
451 2grj_A Dephospho-COA kinase; T 95.2 0.01 3.4E-07 51.8 3.1 24 24-47 12-35 (192)
452 3umf_A Adenylate kinase; rossm 95.2 0.014 4.6E-07 52.0 4.0 26 22-47 27-52 (217)
453 2w58_A DNAI, primosome compone 95.1 0.011 3.7E-07 51.2 3.0 23 25-47 55-77 (202)
454 3kl4_A SRP54, signal recogniti 95.1 0.0063 2.2E-07 59.9 1.5 24 24-47 97-120 (433)
455 1ltq_A Polynucleotide kinase; 95.1 0.013 4.4E-07 54.2 3.6 22 25-46 3-24 (301)
456 1sxj_C Activator 1 40 kDa subu 95.0 0.01 3.5E-07 56.1 2.9 21 27-47 49-69 (340)
457 3gmt_A Adenylate kinase; ssgci 95.0 0.013 4.5E-07 52.6 3.4 24 24-47 8-31 (230)
458 1uj2_A Uridine-cytidine kinase 95.0 0.012 4.3E-07 53.1 3.3 23 25-47 23-45 (252)
459 1jbk_A CLPB protein; beta barr 95.0 0.013 4.6E-07 49.2 3.2 23 25-47 44-66 (195)
460 3bos_A Putative DNA replicatio 94.9 0.014 4.9E-07 51.3 3.3 24 24-47 52-75 (242)
461 2f6r_A COA synthase, bifunctio 94.9 0.013 4.4E-07 54.2 3.0 22 25-46 76-97 (281)
462 4ad8_A DNA repair protein RECN 94.8 0.0055 1.9E-07 61.7 0.5 22 26-47 62-83 (517)
463 2zr9_A Protein RECA, recombina 94.8 0.015 5E-07 55.6 3.4 31 17-47 52-84 (349)
464 1ypw_A Transitional endoplasmi 94.8 0.013 4.5E-07 62.2 3.3 27 21-47 235-261 (806)
465 3b9p_A CG5977-PA, isoform A; A 94.8 0.016 5.5E-07 53.4 3.5 24 24-47 54-77 (297)
466 3h4m_A Proteasome-activating n 94.7 0.019 6.5E-07 52.5 3.6 26 22-47 49-74 (285)
467 2ius_A DNA translocase FTSK; n 94.5 0.016 5.5E-07 58.2 2.9 31 16-46 159-189 (512)
468 1tue_A Replication protein E1; 94.5 0.014 4.7E-07 51.6 2.0 30 18-47 52-81 (212)
469 2qby_A CDC6 homolog 1, cell di 94.5 0.019 6.5E-07 54.4 3.2 24 24-47 45-68 (386)
470 3r7w_B Gtpase2, GTP-binding pr 94.4 0.019 6.5E-07 54.4 3.1 22 26-47 1-22 (331)
471 1fnn_A CDC6P, cell division co 94.4 0.022 7.6E-07 54.2 3.6 22 26-47 46-67 (389)
472 4fcw_A Chaperone protein CLPB; 94.4 0.019 6.4E-07 53.1 3.0 23 25-47 48-70 (311)
473 2ce7_A Cell division protein F 94.4 0.024 8.1E-07 56.5 3.7 22 26-47 51-72 (476)
474 1l8q_A Chromosomal replication 94.4 0.019 6.5E-07 53.7 2.9 23 25-47 38-60 (324)
475 2r6a_A DNAB helicase, replicat 94.3 0.023 7.9E-07 56.1 3.6 31 17-47 196-226 (454)
476 2qz4_A Paraplegin; AAA+, SPG7, 94.3 0.027 9.2E-07 50.6 3.7 24 24-47 39-62 (262)
477 2h92_A Cytidylate kinase; ross 94.3 0.024 8.4E-07 49.6 3.3 23 25-47 4-26 (219)
478 2p65_A Hypothetical protein PF 94.3 0.018 6E-07 48.4 2.3 24 24-47 43-66 (187)
479 1njg_A DNA polymerase III subu 94.3 0.022 7.5E-07 49.7 3.0 22 26-47 47-68 (250)
480 3llm_A ATP-dependent RNA helic 94.2 0.017 5.8E-07 51.6 2.2 31 16-46 68-98 (235)
481 4edh_A DTMP kinase, thymidylat 94.2 0.029 9.9E-07 49.7 3.5 25 23-47 5-29 (213)
482 2j37_W Signal recognition part 94.1 0.025 8.4E-07 56.8 3.3 21 25-45 102-122 (504)
483 1sky_E F1-ATPase, F1-ATP synth 94.1 0.026 8.8E-07 56.0 3.3 30 18-47 145-174 (473)
484 3t15_A Ribulose bisphosphate c 94.1 0.032 1.1E-06 51.8 3.7 26 22-47 34-59 (293)
485 3crm_A TRNA delta(2)-isopenten 93.9 0.035 1.2E-06 52.4 3.7 23 25-47 6-28 (323)
486 2z4s_A Chromosomal replication 93.9 0.026 8.9E-07 55.6 2.9 23 25-47 131-153 (440)
487 1yrb_A ATP(GTP)binding protein 93.9 0.033 1.1E-06 50.1 3.3 22 24-45 14-35 (262)
488 3zvl_A Bifunctional polynucleo 93.8 0.033 1.1E-06 54.4 3.5 23 25-47 259-281 (416)
489 2v3c_C SRP54, signal recogniti 93.8 0.02 6.9E-07 56.3 1.9 23 25-47 100-122 (432)
490 3lv8_A DTMP kinase, thymidylat 93.8 0.036 1.2E-06 49.9 3.5 25 23-47 26-50 (236)
491 2ocp_A DGK, deoxyguanosine kin 93.8 0.035 1.2E-06 49.6 3.4 24 24-47 2-25 (241)
492 3v9p_A DTMP kinase, thymidylat 93.7 0.029 9.9E-07 50.2 2.7 26 22-47 23-48 (227)
493 2chg_A Replication factor C sm 93.7 0.035 1.2E-06 47.8 3.1 22 26-47 40-61 (226)
494 1sxj_D Activator 1 41 kDa subu 93.7 0.031 1.1E-06 52.5 3.0 22 26-47 60-81 (353)
495 3syl_A Protein CBBX; photosynt 93.6 0.042 1.4E-06 50.7 3.7 24 24-47 67-90 (309)
496 1a7j_A Phosphoribulokinase; tr 93.6 0.02 6.9E-07 53.2 1.4 23 25-47 6-28 (290)
497 3d3q_A TRNA delta(2)-isopenten 93.5 0.037 1.3E-06 52.6 3.1 23 25-47 8-30 (340)
498 3n70_A Transport activator; si 93.5 0.046 1.6E-06 44.8 3.4 25 23-47 23-47 (145)
499 1p5z_B DCK, deoxycytidine kina 93.5 0.026 8.7E-07 51.3 1.8 26 22-47 22-47 (263)
500 1v5w_A DMC1, meiotic recombina 93.4 0.053 1.8E-06 51.5 4.0 29 19-47 117-145 (343)
No 1
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=100.00 E-value=1e-82 Score=624.97 Aligned_cols=364 Identities=50% Similarity=0.911 Sum_probs=316.8
Q ss_pred CCCcccCCcCCcccccccccccCCceEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCCcccCCceeEEEeCCcchhhhhhh
Q 017295 1 MPPKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQL 79 (374)
Q Consensus 1 ~~~~~~~~~~~~~~~~vL~~i~~~~~vgLvG~nGaGKSTL~n~Ltg~~~-~~s~~pftT~~p~~G~i~~~g~~~~~l~~~ 79 (374)
|||++. .+..+..|.++..+..+||||+||||||||||+|+|..+ .+++|||||++|+.|.+.++|.++..++.+
T Consensus 1 ~~~~~~----~~~~~~~lg~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~ 76 (392)
T 1ni3_A 1 MPPKKQ----QEVVKVQWGRPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEA 76 (392)
T ss_dssp --------------CCCCSSSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHH
T ss_pred CCCCcc----CcchhhHhccccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhh
Confidence 777642 123457899999999999999999999999999999888 789999999999999999999988888888
Q ss_pred ccCCCCccccchHhhHhhhhccccCCCC--------------------CCCCCceeEecCCCCCchhHHHHHHHHHhhcH
Q 017295 80 FKPKSAVPAFLEIHDIAGLVRGAHEGQG--------------------AFEDPDIIHVDDSVDPVRDLEVISAELRLKDI 139 (374)
Q Consensus 80 ~~~~~~~~~~~~v~D~~gl~~~~~~~~~--------------------~~~~~~il~l~~~~dP~~~l~ilde~l~~~D~ 139 (374)
+.+.+.++..+.+.|++|+..+++.+.+ ++.+..+.|+.+..||.++++++|||+..+|+
T Consensus 77 ~~~~~~v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~d~~i~~v~~~~dP~~di~ildeel~~~D~ 156 (392)
T 1ni3_A 77 YKPKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFDDAEIIHVEGDVDPIRDLSIIVDELLIKDA 156 (392)
T ss_dssp HCCSEEECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCCTTCSSCCSSSSCHHHHHHHHHHHHHHHHH
T ss_pred cccccccCcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeccccCcchhhhhchhhhHHHHH
Confidence 8888888778899999999988776543 33334444445556899999999999999999
Q ss_pred HHHHHHHHHHHHH-HHccC---ccchHHHHHHHHHHHHHHhCC-CceeccCCChhHHHHHHhccccccCCEEEEEcCCCc
Q 017295 140 EFMERRIEDVEKS-MKRSN---DKQLKIEHELCQRVKAWLQDG-KDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEK 214 (374)
Q Consensus 140 ~~~~~~~~~i~~~-~~~~~---~H~~~~~~~~~d~v~~~L~~G-~iv~~~~~~~~~~~~l~~~~~~~~kP~i~v~Nk~d~ 214 (374)
..+++.++.+.+. .+.+. +|.+..+..+|+++..+|++| ++++.++|++++.+.+..+.+++.||++|++|++|.
T Consensus 157 ~~~~k~~~~l~~~~~~~g~ti~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~~~~e~e~i~~~~~lt~kp~~y~~Nv~e~ 236 (392)
T 1ni3_A 157 EFVEKHLEGLRKITSRGANTLEMKAKKEEQAIIEKVYQYLTETKQPIRKGDWSNREVEIINSLYLLTAKPVIYLVNMSER 236 (392)
T ss_dssp HHHHHHHHHHHHTTCCSSCSSSHHHHHHHHHHHHHHHHHHHTTCSCGGGSCCCHHHHHHHHTTCCGGGSCEEEEEECCHH
T ss_pred HHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHhccCCceeecCCCCHHHHHHHHHHhhhccCceEEEEEecch
Confidence 9999999988876 43222 499999999999996699999 999889999999999999999999999999999986
Q ss_pred cccccccccHHHHHHHHHhhC-CCeEEEeeHHHHHHhcCCChhHHHHHHHhccccccHHHHHHHHHhhcCceeeeccCCC
Q 017295 215 DYQRKKNKFLPKIHAWVQEHG-GEQIIPFSCALERNLADMPPDEAAKYCEENKVQSALPKIIKTGFSAINLIYFFTAGPD 293 (374)
Q Consensus 215 d~~~~~~~~~~~l~~~~~~~~-~~~~i~vSa~~e~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~L~li~~ft~~~~ 293 (374)
++..+.+++++.++++...++ +.++|++||+.|.+|.+|+++++.+||+++|.++++++|++++|++||||+|||+||+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~p~~~~v~~sa~~E~~l~~l~~~~~~~~l~~~g~~~gl~~~i~~~~~~L~l~~~ft~g~~ 316 (392)
T 1ni3_A 237 DFLRQKNKYLPKIKKWIDENSPGDTLIPMSVAFEERLTNFTEEEAIEECKKLNTKSMLPKIIVTGYNALNLINYFTCGED 316 (392)
T ss_dssp HHTTTCCSSHHHHHHHHHTTSTTCCEEEECHHHHHHHTTSCHHHHHHHHHHTTCCCSHHHHHHHHHHHTTEEEEEECCSS
T ss_pred hhcccchHHHHHHHHHHHhcCCCCeEEEEEhHHHHHHhhCCHHHHHHHHHHhCCcccHHHHHHHHHHHhCCEEEECCCCC
Confidence 554234788999999886542 3689999999999999999999999999999899999999999999999999999999
Q ss_pred CeeeEEecCCCChhHhhhhcchhhhcceEEEEEecchhhhhcCChHHHhhcCcccccCCcceecCCCEEEEEeec
Q 017295 294 EVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVMKFDDLKELGSEPAVKAAGKYKQEGKTYVVQDGDIIFFKFNV 368 (374)
Q Consensus 294 e~~~~~i~~gsta~~~a~~IHsd~~~~f~~A~v~~~~d~~~~~~~~~~~~~g~~~~~g~dy~~~dgDii~~~~~~ 368 (374)
|+|||+|++||||+||||+|||||+|||||||||+|+||++|||+++||++|++|++||||+|||||||+||||+
T Consensus 317 e~rawti~~G~~a~~aag~IH~d~~~gfi~ae~~~~~d~~~~g~~~~~k~~g~~r~~gk~y~v~dgdv~~f~f~~ 391 (392)
T 1ni3_A 317 EVRSWTIRKGTKAPQAAGVIHTDFEKAFVVGEIMHYQDLFDYKTENACRAAGKYLTKGKEYVMESGDIAHWKAGK 391 (392)
T ss_dssp EEEEEEEETTCBHHHHHHHHCHHHHHTCSEEEEECHHHHHHHTSHHHHHHTTCSCEEETTCBCCTTCEEECC---
T ss_pred cceeEEeCCCCcHHHHccccchhhhhccEEEEECCHHHHHHcCCHHHHHHcCCccccCCceeeeCCCEEEEEccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999997
No 2
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=100.00 E-value=6e-82 Score=618.17 Aligned_cols=372 Identities=61% Similarity=1.019 Sum_probs=278.6
Q ss_pred CCCcccCCcCCcccccccccccCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhc
Q 017295 1 MPPKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLF 80 (374)
Q Consensus 1 ~~~~~~~~~~~~~~~~vL~~i~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~ 80 (374)
|||++.. +.+..+..+.++..+.++||||+||||||||||+|+|..+.+++|||||++|+.|.+.++|.++..+++.+
T Consensus 1 ~~~~~~~--~~~~~~~l~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~ 78 (396)
T 2ohf_A 1 MPPKKGG--DGIKPPPIIGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYH 78 (396)
T ss_dssp -----------------CCCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHH
T ss_pred CCCCccc--ccchhhHHHhhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeecccc
Confidence 6776421 01234568899999999999999999999999999999888899999999999999999999888888888
Q ss_pred cCCCCccccchHhhHhhhhccccCCCC--------------------CCCCCceeEecCCCCCchhHHHHHHHHHhhcHH
Q 017295 81 KPKSAVPAFLEIHDIAGLVRGAHEGQG--------------------AFEDPDIIHVDDSVDPVRDLEVISAELRLKDIE 140 (374)
Q Consensus 81 ~~~~~~~~~~~v~D~~gl~~~~~~~~~--------------------~~~~~~il~l~~~~dP~~~l~ilde~l~~~D~~ 140 (374)
.|.+.++..++++|++|+.++++.+.+ ++.++.+.|+.+..+|.+++.++.+++...|+.
T Consensus 79 ~p~~~~~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~~v~~~~dP~~di~~i~~El~l~d~~ 158 (396)
T 2ohf_A 79 KPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDITHVEGSVDPIRDIEIIHEELQLKDEE 158 (396)
T ss_dssp CCSEEECCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC------------CTTHHHHHHHHHHHHHHHHH
T ss_pred CcccccccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCCcchhhhcCCCChHHHHHHhhhhhhhhhHH
Confidence 887777788999999999987765433 222233334444569999999999999999999
Q ss_pred HHHHHHHHHHHHHHccCccchHHHHHHHHHHHHHHhCC-Ccee-ccCCChhHHHHHHhccccccCCEEEEEcCCCccccc
Q 017295 141 FMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDG-KDVR-LGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQR 218 (374)
Q Consensus 141 ~~~~~~~~i~~~~~~~~~H~~~~~~~~~d~v~~~L~~G-~iv~-~~~~~~~~~~~l~~~~~~~~kP~i~v~Nk~d~d~~~ 218 (374)
.+++.++.+.+...+++.........++++++.+|.+| ..++ ..+|+.+|.+.++.+.+++.||++|++|+++.++..
T Consensus 159 ~~~k~~~~~~k~~~~~g~~~~~~~~~ll~~i~~~L~e~~~~~~~~~~~~~~e~e~i~~~~llt~KPviy~~Nv~e~~~~~ 238 (396)
T 2ohf_A 159 MIGPIIDKLEKVAVRGGDKKLKPEYDIMCKVKSWVIDQKKPVRFYHDWNDKEIEVLNKHLFLTSKPMVYLVNLSEKDYIR 238 (396)
T ss_dssp HHHHHHHTTCSCC--------CCHHHHHHHHHHHTTC--CCGGGCCCCCHHHHHHHHHHCCGGGSCEEEEEECCHHHHHH
T ss_pred HHHHhhhhhhhhhhcccchhhhhHHHHHHHHHHHHHhcCcchhhcccCCHHHHHHHHHHHHHhCCceEEEEEecHHHhcc
Confidence 98888877654322222222223456778888899999 5555 467999988888999999999999999999766654
Q ss_pred cccccHHHHHHHHHhh-CCCeEEEeeHHHHHHhcCCChhHHHHHHHhccccccHHHHHHHHHhhcCceeeeccCCCCeee
Q 017295 219 KKNKFLPKIHAWVQEH-GGEQIIPFSCALERNLADMPPDEAAKYCEENKVQSALPKIIKTGFSAINLIYFFTAGPDEVKC 297 (374)
Q Consensus 219 ~~~~~~~~l~~~~~~~-~~~~~i~vSa~~e~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~L~li~~ft~~~~e~~~ 297 (374)
..+.+++.+++++..+ ++.++|++||+.|.+|.+|+++++.+||+++|.+++|++|++++|++||||+|||+||+|+||
T Consensus 239 ~~n~~~~~v~~~~~~~~~~~~~v~~sa~~E~~l~~l~~~e~~~~l~~~g~~~~l~~li~~~~~~L~li~~fT~g~~evra 318 (396)
T 2ohf_A 239 KKNKWLIKIKEWVDKYDPGALVIPFSGALELKLQELSAEERQKYLEANMTQSALPKIIKAGFAALQLEYFFTAGPDEVRA 318 (396)
T ss_dssp TCCHHHHHHHHHHHHHSTTCEEEEECHHHHHHHHHSCHHHHHHHHHHTTCCCSHHHHHHHHHHHTTEEEEEEESSSEEEE
T ss_pred cccHHHHHHHHHHHhhCCCCeEEEEEcHHHHHHhhCCHHHHHHHHHHhCCCchHHHHHHHHHHHhCCEEEECCCCCccee
Confidence 4467888888887643 367899999999999999999999999999998899999999999999999999999999999
Q ss_pred EEecCCCChhHhhhhcchhhhcceEEEEEecchhhhhcCChHHHhhcCcccccCCcceecCCCEEEEEeecCCCCCC
Q 017295 298 WQIRRQTKAPQAAGTIHTDFERGFICAEVMKFDDLKELGSEPAVKAAGKYKQEGKTYVVQDGDIIFFKFNVSGGGKK 374 (374)
Q Consensus 298 ~~i~~gsta~~~a~~IHsd~~~~f~~A~v~~~~d~~~~~~~~~~~~~g~~~~~g~dy~~~dgDii~~~~~~~~~~~~ 374 (374)
|+|++|+||+||||+|||||+||||||+||+|+||++|||+++||++|++|++||||+|||||||+|||||+++++|
T Consensus 319 wti~~g~ta~~aAg~IH~D~~~gFi~Aev~~~~d~~~~g~~~~~k~~g~~r~~Gk~y~v~dgDii~f~fn~~~~~~~ 395 (396)
T 2ohf_A 319 WTIRKGTKAPQAAGKIHTDFEKGFIMAEVMKYEDFKEEGSENAVKAAGKYRQQGRNYIVEDGDIIFFKFNTPQQPKK 395 (396)
T ss_dssp EEEETTCBHHHHHHTTCTHHHHHEEEEEEECHHHHHHHCSHHHHHHTTCCEEECTTCBCCTTCEEEEEEC-------
T ss_pred EEecCCCcHHHHHhhhHHHHHhcceEEEEccHHHHHHhCCHHHHHhcCcccccCCCceeeCCCEEEEEecCCcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988876
No 3
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=100.00 E-value=2.2e-78 Score=587.76 Aligned_cols=342 Identities=40% Similarity=0.770 Sum_probs=294.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhccc
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~~~ 102 (374)
|+.+++|||.||||||||||+|++..+.+++|||||+.|+.|.+.+++.++..+++.+.|.+..+..++++|++|+.+++
T Consensus 1 m~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 1 MGFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 46789999999999999999999998788999999999999999999988888999898888777789999999998765
Q ss_pred cCCCC--------------------CCCCCceeEecCCCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCccchH
Q 017295 103 HEGQG--------------------AFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLK 162 (374)
Q Consensus 103 ~~~~~--------------------~~~~~~il~l~~~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~H~~~ 162 (374)
+.+.+ ++.++.+.|+.+..||.+++.++.+++..+|+..+++++.++.+.. +++..+..
T Consensus 81 ~~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~-k~g~~~~~ 159 (363)
T 1jal_A 81 SKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRA-KGGDKEAK 159 (363)
T ss_dssp HHHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTTCHHHH
T ss_pred cccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHh-hccchhHH
Confidence 43211 2233333444445689999999999999999999999999887654 33344556
Q ss_pred HHHHHHHHHHHHHhCCCceeccCCChhHHHHHHhccccccCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEe
Q 017295 163 IEHELCQRVKAWLQDGKDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPF 242 (374)
Q Consensus 163 ~~~~~~d~v~~~L~~G~iv~~~~~~~~~~~~l~~~~~~~~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~v 242 (374)
....++++++..|++|++++..+|++++...+..+.+++.||+|||+|++|.+. ..+.+++.++++.... +.++|++
T Consensus 160 ~~~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~--~~n~~~~~v~~~~~~~-~~~~i~~ 236 (363)
T 1jal_A 160 FELSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGF--ENNPYLDRVREIAAKE-GAVVVPV 236 (363)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCS--SSCHHHHHHHHHHHHT-TCEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccc--cccHHHHHHHHHHHHc-CCCEEEe
Confidence 677888999999999999887789999999999999999999999999998654 2357888888887654 5789999
Q ss_pred eHHHHHHhcCCChhHHHHHHHhccc-cccHHHHHHHHHhhcCceeeeccCCCCeeeEEecCCCChhHhhhhcchhhhcce
Q 017295 243 SCALERNLADMPPDEAAKYCEENKV-QSALPKIIKTGFSAINLIYFFTAGPDEVKCWQIRRQTKAPQAAGTIHTDFERGF 321 (374)
Q Consensus 243 Sa~~e~~l~~l~~~~~~~~~~~~~~-~~~l~~l~~~~~~~L~li~~ft~~~~e~~~~~i~~gsta~~~a~~IHsd~~~~f 321 (374)
||+.|.+|.+|+++++.+|++++|+ +++|++|++++|++||||+|||+||+|+|||+|++|+||+||||+|||||+|||
T Consensus 237 sA~~E~el~~l~~~e~~~~l~~~g~~~~gl~~li~~~~~~L~li~~ft~g~~e~raw~i~~G~ta~~aAg~IH~D~~~gF 316 (363)
T 1jal_A 237 CAAIESEIAELDDEEKVEFLQDLGIEEPGLNRVIRAGYALLNLQTYFTAGVKEVRAWTVSVGATAPKAAAVIHTDFEKGF 316 (363)
T ss_dssp CHHHHHHGGGSCSSTTHHHHTTSSCCSCTTHHHHHHHHHHTTEEEEEEECSSEEEEEEEETTCBHHHHHHTTCTTHHHHC
T ss_pred chHHHHHHHhcCHHHHHHHHHHhCcccccHHHHHHHHHHHhCCEEEECCCCCCcceeEecCCCcHHHHHHhhHHHHHhcc
Confidence 9999999999999999999999995 899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecchhhhhcCChHHHhhcCcccccCCcceecCCCEEEEEeec
Q 017295 322 ICAEVMKFDDLKELGSEPAVKAAGKYKQEGKTYVVQDGDIIFFKFNV 368 (374)
Q Consensus 322 ~~A~v~~~~d~~~~~~~~~~~~~g~~~~~g~dy~~~dgDii~~~~~~ 368 (374)
||||||+|+||++|||+++||++|++|+|||||+|||||||+|||||
T Consensus 317 i~Aev~~~~d~~~~~~~~~~k~~g~~r~egk~y~v~dgDii~f~fn~ 363 (363)
T 1jal_A 317 IRAEVIAYEDFIQFNGENGAKEAGKWRLEGKDYIVQDGDVMHFRFNV 363 (363)
T ss_dssp CEEEEECHHHHHHTTSHHHHHHTTCCEEECTTCBCCTTCEEEEESCC
T ss_pred EEEEEcCHHHHHHhCCHHHHHhcCCeeccCCccEecCCCEEEEEecC
Confidence 99999999999999999999999999999999999999999999997
No 4
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=100.00 E-value=1e-75 Score=572.20 Aligned_cols=341 Identities=43% Similarity=0.656 Sum_probs=295.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCC----CccccchHhhHhhhhc
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS----AVPAFLEIHDIAGLVR 100 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~----~~~~~~~v~D~~gl~~ 100 (374)
.++||||+||||||||||+|++..+.+++|||||++|+.|.+.+++.++..++..+.+.+ ..+..++++|++|+..
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 468999999999999999999988778999999999999999999988888888777766 3455689999999988
Q ss_pred cccCCCC---C-----CCCCceeEecC------------CCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCccc
Q 017295 101 GAHEGQG---A-----FEDPDIIHVDD------------SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQ 160 (374)
Q Consensus 101 ~~~~~~~---~-----~~~~~il~l~~------------~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~H~ 160 (374)
+++.+.+ . ...+.++++.+ ..||.+++.++++++...|+..+++.+.++.+..+ + .|.
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~-~-~~~ 159 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEAR-A-DRE 159 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-CGG
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhc-c-chh
Confidence 8765543 1 12234455544 45899999999999999999999999998876542 2 456
Q ss_pred hHHHHHHHHHHHHHHhCCCceeccCCChhHHHHHHhccccccCCEEEEEcCCCcccccc-ccccHHHHHHHHHhhCCCeE
Q 017295 161 LKIEHELCQRVKAWLQDGKDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRK-KNKFLPKIHAWVQEHGGEQI 239 (374)
Q Consensus 161 ~~~~~~~~d~v~~~L~~G~iv~~~~~~~~~~~~l~~~~~~~~kP~i~v~Nk~d~d~~~~-~~~~~~~l~~~~~~~~~~~~ 239 (374)
......++++++..|++|+.++..+|++++...+..+.+++.||++|++||+|.++.+. ++.+++.++++.+.. +.++
T Consensus 160 ~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~-g~~v 238 (368)
T 2dby_A 160 RLPLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEE-GAEV 238 (368)
T ss_dssp GHHHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHH-TCEE
T ss_pred HHHHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHc-CCeE
Confidence 66678889999899999998876789888899999999999999999999998665431 257788888887665 5789
Q ss_pred EEeeHHHHHHhcCCChhHHHHHHHhccc-cccHHHHHHHHHhhcCceeeeccCCCCeeeEEecCCCChhHhhhhcchhhh
Q 017295 240 IPFSCALERNLADMPPDEAAKYCEENKV-QSALPKIIKTGFSAINLIYFFTAGPDEVKCWQIRRQTKAPQAAGTIHTDFE 318 (374)
Q Consensus 240 i~vSa~~e~~l~~l~~~~~~~~~~~~~~-~~~l~~l~~~~~~~L~li~~ft~~~~e~~~~~i~~gsta~~~a~~IHsd~~ 318 (374)
|++||+.|.+|.+|+++++.+|++++|+ +++|++|++++|++||||+|||+||+|+|||+|++|+||+||||+|||||+
T Consensus 239 v~iSAk~E~el~eL~~~~~~~~l~~~g~~~~gl~~li~~~~~~L~li~~ft~g~~e~~aw~i~~g~ta~~~a~~IH~d~~ 318 (368)
T 2dby_A 239 VVVSARLEAELAELSGEEARELLAAYGLQESGLQRLARAGYRALDLLTFFTAGEKEVRAWTVRRGTKAPRAAGEIHSDME 318 (368)
T ss_dssp EEECHHHHHHHHTSCHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTEEEEEEESSSCEEEEEEETTCBHHHHHHHHCHHHH
T ss_pred EEeechhHHHHHHhchHHHHHHHHHhCcchhhHHHHHHHHHHHhCCEEEECCCCCCcceEEecCCCcHHHHHHhhHHHHH
Confidence 9999999999999999999999999996 899999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEecchhhhhcCChHHHhhcCcccccCCcceecCCCEEEEEeec
Q 017295 319 RGFICAEVMKFDDLKELGSEPAVKAAGKYKQEGKTYVVQDGDIIFFKFNV 368 (374)
Q Consensus 319 ~~f~~A~v~~~~d~~~~~~~~~~~~~g~~~~~g~dy~~~dgDii~~~~~~ 368 (374)
||||||+||+|+||++|||+++||++|++|+|||||+|||||||+|||||
T Consensus 319 ~~fi~A~v~~~~d~~~~~~~~~~k~~g~~r~~gk~y~v~dgdi~~~~f~~ 368 (368)
T 2dby_A 319 RGFIRAEVIPWDKLVEAGGWARAKERGWVRLEGKDYEVQDGDVIYVLFNA 368 (368)
T ss_dssp HSCCEEEEEEHHHHHHHTSHHHHHHTTCCEEECTTCBCCTTEEEEEEC--
T ss_pred hhCeEEEEccHHHHHHhCCHHHHHhcCCccccCCCceecCCCEEEEEecC
Confidence 99999999999999999999999999999999999999999999999997
No 5
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-50 Score=395.38 Aligned_cols=276 Identities=19% Similarity=0.284 Sum_probs=199.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhccccC
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~~~~~ 104 (374)
.+|||||.||||||||||+|||.++.++||||||++|+.|.+.++|.+ ++++|+||++.+++.
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~-----------------i~l~D~pGl~~~a~~ 135 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAK-----------------IQMLDLPGIIDGAKD 135 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEE-----------------EEEEECGGGCCC---
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcE-----------------EEEEeCCCccCCchh
Confidence 469999999999999999999999999999999999999999998865 789999999998887
Q ss_pred CCC--------CCCCCceeEecCCCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc--------cchHHHHHHH
Q 017295 105 GQG--------AFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND--------KQLKIEHELC 168 (374)
Q Consensus 105 ~~~--------~~~~~~il~l~~~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~--------H~~~~~~~~~ 168 (374)
+.+ ....+.++++.|+.+|.+++..+..++...++...++....+.....+++. -.+. .
T Consensus 136 ~~~~g~~~l~~i~~ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~-----~ 210 (376)
T 4a9a_A 136 GRGRGKQVIAVARTCNLLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLG-----N 210 (376)
T ss_dssp --CHHHHHHHHHHHCSEEEEEEETTSHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCC-----H
T ss_pred hhHHHHHHHHHHHhcCccccccccCccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhcc-----H
Confidence 765 224678899999999999999998888776643211110000000001110 0000 1
Q ss_pred HHHHHHHhCCC-----ceeccCCChhHHHHHHhccccccCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEee
Q 017295 169 QRVKAWLQDGK-----DVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFS 243 (374)
Q Consensus 169 d~v~~~L~~G~-----iv~~~~~~~~~~~~l~~~~~~~~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vS 243 (374)
+.++.++.... ++...++++++...........++|+++++||+|. . ..+.++... + ...++++|
T Consensus 211 eeik~il~~~~lt~kpv~~~~nv~eddl~d~~~~~~~~~~p~i~v~nKid~--~-----~~eele~l~-~--~~~~~~is 280 (376)
T 4a9a_A 211 DEIRAVMSEYRINSAEIAFRCDATVDDLIDVLEASSRRYMPAIYVLNKIDS--L-----SIEELELLY-R--IPNAVPIS 280 (376)
T ss_dssp HHHHHHHHHTTCCSEEEEECSCCCHHHHHHHHTTTTCEEECEEEEEECGGG--S-----CHHHHHHHT-T--STTEEECC
T ss_pred HHHHHHHHHhcccCCCeeecccCCHHHHHHHHHHHHhhccceEEEEecccc--c-----CHHHHHHHh-c--ccchhhhh
Confidence 11222333222 23345677776554444444567889999998852 1 123343322 1 22478888
Q ss_pred HHHHHHhcCCChhHHHHHHHhccccccHHHHHHHHHhhcCceeeeccCCCCeeeEEecC----C-CChhHhhhhcchhhh
Q 017295 244 CALERNLADMPPDEAAKYCEENKVQSALPKIIKTGFSAINLIYFFTAGPDEVKCWQIRR----Q-TKAPQAAGTIHTDFE 318 (374)
Q Consensus 244 a~~e~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~L~li~~ft~~~~e~~~~~i~~----g-sta~~~a~~IHsd~~ 318 (374)
+..| ++|++|++++|++||||+|||+||+|+|+|++|. | +|+.|+|+.||+||.
T Consensus 281 ~~~e---------------------~gLd~Li~~~y~~L~Li~~fT~g~~E~rawt~~~~~~a~~at~~D~a~~ih~d~~ 339 (376)
T 4a9a_A 281 SGQD---------------------WNLDELLQVMWDRLNLVRIYTKPKGQIPDFTDPVVLRSDRCSVKDFCNQIHKSLV 339 (376)
T ss_dssp TTTC---------------------TTHHHHHHHHHHHHCCEEEEECCSSSCCCSSSCEEEBTTBCBHHHHHHHHCGGGG
T ss_pred hhhc---------------------ccchhHHHHHHHHcCCcEEEeCCCCCcCCCCccccccCCCCcHHHHHHHHHHHHH
Confidence 7643 4789999999999999999999999999999654 3 778889999999999
Q ss_pred cceEEEEEecchhhhhcCChHHHhhcCcccccCCcceecCCCEEEEE
Q 017295 319 RGFICAEVMKFDDLKELGSEPAVKAAGKYKQEGKTYVVQDGDIIFFK 365 (374)
Q Consensus 319 ~~f~~A~v~~~~d~~~~~~~~~~~~~g~~~~~g~dy~~~dgDii~~~ 365 (374)
++|+||+||+ .+||++| |+|||||+|||||||+|.
T Consensus 340 ~~F~~a~v~G----------s~~K~~~--r~eGkdyvv~DGDVi~iv 374 (376)
T 4a9a_A 340 DDFRNALVYG----------SSVKHQP--QYVGLSHILEDEDVVTIL 374 (376)
T ss_dssp GGEEEEEEES----------TTSSSSS--EEECTTCBCCTTCEEEEE
T ss_pred HhhhHhhhcC----------cccCCCC--CccCCCcEEcCCCEEEEE
Confidence 9999999998 5678887 999999999999999986
No 6
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=100.00 E-value=1.2e-48 Score=385.51 Aligned_cols=313 Identities=26% Similarity=0.378 Sum_probs=210.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEE----eCCcchhhhhhhccCCC------CccccchHhh
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVN----IPDERFEWLCQLFKPKS------AVPAFLEIHD 94 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~----~~g~~~~~l~~~~~~~~------~~~~~~~v~D 94 (374)
.+|+|||.||||||||||+|+|..+.+++|||||++|+.|.+. +++.++..+ +.|.. .-...+.++|
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~---~~p~~~~~~~~~~~~~i~lvD 77 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCS---PNPQNYEYRNGLALIPVKMVD 77 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCS---CCCSSSCEETTEEEEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhh---cccccccccCCcceEEEEEEE
Confidence 3689999999999999999999987779999999999999854 344443222 11210 0012378999
Q ss_pred HhhhhccccCCCC-------C-CCCCceeEecCCC-------------CCchhHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q 017295 95 IAGLVRGAHEGQG-------A-FEDPDIIHVDDSV-------------DPVRDLEVISAELRLKDIEFMERRIEDVEKSM 153 (374)
Q Consensus 95 ~~gl~~~~~~~~~-------~-~~~~~il~l~~~~-------------dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~ 153 (374)
+||+..+++.+.+ . -..+.++++.++. ||.+++.++.+++..+|+..+++.+..+.+..
T Consensus 78 tpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL~~~d~~~l~~~~~~~~k~~ 157 (397)
T 1wxq_A 78 VAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRI 157 (397)
T ss_dssp CC---------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHHHHHHHHHHHTTTHHHHSTT
T ss_pred CCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 9999876554332 1 1235566776642 69999999999999999999998888887543
Q ss_pred HccCccchHH-H----------HHHHHHHHHHHhCCCceeccCCChhHHHHHHhccccccCCEEEEEcCCCccccccccc
Q 017295 154 KRSNDKQLKI-E----------HELCQRVKAWLQDGKDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNK 222 (374)
Q Consensus 154 ~~~~~H~~~~-~----------~~~~d~v~~~L~~G~iv~~~~~~~~~~~~l~~~~~~~~kP~i~v~Nk~d~d~~~~~~~ 222 (374)
+.++ ..... + ...+.+++..+..++. ..+|++++...+..+.+++.+|+|||+||+|.. .++
T Consensus 158 ~~~~-~~~~~~~~~~l~g~~~~~~~~~~~l~~l~~~~~--~~~~~~~e~~~l~~~~~~~~kP~i~v~NK~D~~----~~~ 230 (397)
T 1wxq_A 158 KLQK-IKLESAIAEHLSGIGVNENDVWEAMHKLNLPED--PTKWSQDDLLAFASEIRRVNKPMVIAANKADAA----SDE 230 (397)
T ss_dssp TSSC-CCHHHHHHHHTGGGTCCHHHHHHHHHHTTCCSC--GGGCCHHHHHHHHHHHHHHHSCEEEEEECGGGS----CHH
T ss_pred hhcC-ccHHHHHHHHhcccCCCHHHHHHHHHHhccCCc--cccCCHHHHHHHHHhhhccCCCEEEEEeCcccc----chH
Confidence 2222 11111 1 1234445455555655 347888887777777778889999999999743 134
Q ss_pred cHHHHHHHHHhhCCCeEEEeeHHHHHHhcCC---------------------ChhHHH-------HHHHhccccccHHHH
Q 017295 223 FLPKIHAWVQEHGGEQIIPFSCALERNLADM---------------------PPDEAA-------KYCEENKVQSALPKI 274 (374)
Q Consensus 223 ~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l---------------------~~~~~~-------~~~~~~~~~~~l~~l 274 (374)
.++.+.+.+... +.++|++||+.|.+|.+| +++++. +||+.+| +++++++
T Consensus 231 ~l~~l~~~~~~~-~~~vv~iSA~~e~~l~~L~~~~l~~~~p~~~~~~~~~~l~~~~~~~~e~ire~~l~~~g-~~g~~~~ 308 (397)
T 1wxq_A 231 QIKRLVREEEKR-GYIVIPTSAAAELTLRKAAKAGFIEYIPGASEFKVLRDMSEKQKRALMVIKEKVLDRFG-STGVQEV 308 (397)
T ss_dssp HHHHHHHHHHHT-TCEEEEECHHHHHHHHSCSSSCCCCSCC-----------------CTTHHHHHHTSSSS-SCSHHHH
T ss_pred HHHHHHHHHhhc-CCcEEEEeccchhhHHHHHhhhhhhhcCCCccccccccCCHHHHHHHHHHHHHHHHHhC-cchHHHH
Confidence 455665554332 568999999999999875 333333 5677788 8999999
Q ss_pred HH-HHHhhcCceeeeccC----------CCCeeeEEecCCCChhHhhhhcchhhhcceEEEEEecchhhhhcCChHHHhh
Q 017295 275 IK-TGFSAINLIYFFTAG----------PDEVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVMKFDDLKELGSEPAVKA 343 (374)
Q Consensus 275 ~~-~~~~~L~li~~ft~~----------~~e~~~~~i~~gsta~~~a~~IHsd~~~~f~~A~v~~~~d~~~~~~~~~~~~ 343 (374)
++ ++|++|+||+|||+| +++++||++|+|+||+|+|++|||||+++|+||+ +.
T Consensus 309 i~~~~~~~L~li~vft~~~~~~~~~~~g~~~~~~~~l~~G~t~~d~a~~iH~d~~~~f~~a~----------------~~ 372 (397)
T 1wxq_A 309 INRVVFDLLKLIPVYPVHDENKLTDQFGNVLPHVFLMKKGSTPRDLAFKVHTDLGKGFLYAI----------------NA 372 (397)
T ss_dssp HHHHHHTTSCEEEEEEESCC-----CCSCSSCCCEEEETTCCHHHHHHHHCHHHHHTEEEEE----------------ET
T ss_pred HHHHHHHHhCCeEEEeecccccccCCcCcccceeEEeCCCCCHHHHHHHHhHHHHhhhhhhH----------------Hh
Confidence 95 669999999999976 3467999999999999999999999999999998 23
Q ss_pred cCcccccCCcceecCCCEEEEEe
Q 017295 344 AGKYKQEGKTYVVQDGDIIFFKF 366 (374)
Q Consensus 344 ~g~~~~~g~dy~~~dgDii~~~~ 366 (374)
.|+ +++|+||+|+|||||+|.-
T Consensus 373 ~~~-~~~g~~~~l~dgDvv~i~~ 394 (397)
T 1wxq_A 373 RTK-RRVGEDYELQFNDIVKIVS 394 (397)
T ss_dssp TTC-SBCCTTCCCCTTEEEEEEE
T ss_pred cCC-EEcCCCccccCCCEEEEEe
Confidence 343 5789999999999999974
No 7
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=99.85 E-value=3.1e-22 Score=153.54 Aligned_cols=78 Identities=22% Similarity=0.248 Sum_probs=72.2
Q ss_pred HHhhcCceeeeccC----CCCeeeEEe-cCCCChhHhhhhcchhhhcceEEEEEecchhhhhcCChHHHhhcCcccccCC
Q 017295 278 GFSAINLIYFFTAG----PDEVKCWQI-RRQTKAPQAAGTIHTDFERGFICAEVMKFDDLKELGSEPAVKAAGKYKQEGK 352 (374)
Q Consensus 278 ~~~~L~li~~ft~~----~~e~~~~~i-~~gsta~~~a~~IHsd~~~~f~~A~v~~~~d~~~~~~~~~~~~~g~~~~~g~ 352 (374)
.|+.|+||++||+. ||..+|.++ |+|+||.|+|.+||+||.+.|+||.||+ ++||+.| |++|.
T Consensus 5 ~~~~L~lIrVYtk~~G~~pd~~dpviL~~~GsTv~Dfa~~IH~di~~~fkyA~VwG----------~saK~~~--qrVgl 72 (93)
T 2eki_A 5 SSGYLKLVRIYTKPKGQLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWG----------LSVKHNP--QKVGK 72 (93)
T ss_dssp SSSSCCEEEEEECCTTSCCCSSSCEEEETTSCCHHHHHHHHCTTCTTTEEEEEEBS----------TTSSSSS--EEECS
T ss_pred ChhhcCeEEEEeCCCCCCCCCCCCEEEecCCCCHHHHHHHHHHHHHhhccEEEEec----------ccccCCC--EECCC
Confidence 37899999999964 367789999 9999999999999999999999999999 7899888 99999
Q ss_pred cceecCCCEEEEEee
Q 017295 353 TYVVQDGDIIFFKFN 367 (374)
Q Consensus 353 dy~~~dgDii~~~~~ 367 (374)
||+|+|||||+|.-.
T Consensus 73 dh~L~d~DVV~Iv~~ 87 (93)
T 2eki_A 73 DHTLEDEDVIQIVKK 87 (93)
T ss_dssp SCCCCSSEEECEEEC
T ss_pred CcEecCCCEEEEEeC
Confidence 999999999999855
No 8
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.79 E-value=4.5e-21 Score=185.54 Aligned_cols=159 Identities=15% Similarity=0.241 Sum_probs=122.7
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcch----hhh-----hhhc
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF----EWL-----CQLF 80 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~----~~l-----~~~~ 80 (374)
++.+|+++++ |..++|+||||||||||+|+|+|+ ..|++|.|.++|+++ ... ...|
T Consensus 16 ~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl-----------~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~ 84 (359)
T 3fvq_A 16 NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGF-----------EQPDSGEISLSGKTIFSKNTNLPVRERRLGY 84 (359)
T ss_dssp TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEEEESSSCBCCGGGSCCEE
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcC-----------CCCCCcEEEECCEECcccccccchhhCCEEE
Confidence 4678998876 456999999999999999999999 889999999999876 211 1257
Q ss_pred cCCCC-ccccchHhhHhhhhccccCCCC-----------------CCCCCceeEecC------------CCCCchhHHHH
Q 017295 81 KPKSA-VPAFLEIHDIAGLVRGAHEGQG-----------------AFEDPDIIHVDD------------SVDPVRDLEVI 130 (374)
Q Consensus 81 ~~~~~-~~~~~~v~D~~gl~~~~~~~~~-----------------~~~~~~il~l~~------------~~dP~~~l~il 130 (374)
.+|.. +++.+++.|++.+......... .+.+..+-.+++ +.+| +++++
T Consensus 85 vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P--~lLLL 162 (359)
T 3fvq_A 85 LVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDP--ELILL 162 (359)
T ss_dssp ECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCC--SEEEE
T ss_pred EeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCC--CEEEE
Confidence 78876 6778999999988543221111 122233333443 6789 99999
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 131 SAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 131 de~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
|||++++|+.....++..+.+..++ +.+ |++.++..+||+| .+|++|+++..++.
T Consensus 163 DEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri-~vl~~G~i~~~g~~ 223 (359)
T 3fvq_A 163 DEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRI-AVMKQGRILQTASP 223 (359)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEE-EEEETTEEEEEECH
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEE-EEEECCEEEEEeCH
Confidence 9999999999999988877766543 444 9999999999999 99999999877653
No 9
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.79 E-value=3.2e-21 Score=180.03 Aligned_cols=159 Identities=16% Similarity=0.252 Sum_probs=122.6
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-------hhccC
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKP 82 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-------~~~~~ 82 (374)
++.+|+++++. ..+||+||||||||||+|+|+|+ +.|++|.|.++|.++.... ..|.+
T Consensus 23 ~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl-----------~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~ 91 (266)
T 4g1u_C 23 QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGY-----------LSPSHGECHLLGQNLNSWQPKALARTRAVMR 91 (266)
T ss_dssp TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSS-----------SCCSSCEEEETTEETTTSCHHHHHHHEEEEC
T ss_pred CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-----------CCCCCcEEEECCEECCcCCHHHHhheEEEEe
Confidence 56789998864 55999999999999999999999 8899999999998765322 24667
Q ss_pred CCC-ccccchHhhHhhhhccccCCCC---------------CCCCCceeEecC------------CC------CCchhHH
Q 017295 83 KSA-VPAFLEIHDIAGLVRGAHEGQG---------------AFEDPDIIHVDD------------SV------DPVRDLE 128 (374)
Q Consensus 83 ~~~-~~~~~~v~D~~gl~~~~~~~~~---------------~~~~~~il~l~~------------~~------dP~~~l~ 128 (374)
|.. ++..+++.|++.+......... .+.+..+-.+++ +. +| +++
T Consensus 92 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p--~lL 169 (266)
T 4g1u_C 92 QYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTP--RWL 169 (266)
T ss_dssp SCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCC--EEE
T ss_pred cCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCC--CEE
Confidence 765 4556889998877543221111 122223333443 34 88 999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHccC-c-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 129 VISAELRLKDIEFMERRIEDVEKSMKRSN-D-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 129 ilde~l~~~D~~~~~~~~~~i~~~~~~~~-~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
++|||++++|+.....+++.+.++.++++ + |+++.+..+||++ .+|++|+++..++.
T Consensus 170 llDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v-~vl~~G~i~~~g~~ 232 (266)
T 4g1u_C 170 FLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRI-MLLAQGKLVACGTP 232 (266)
T ss_dssp EECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEE-EEEETTEEEEEECH
T ss_pred EEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEE-EEEECCEEEEEcCH
Confidence 99999999999999999999998876543 3 9999999999999 99999999987654
No 10
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.79 E-value=3.6e-21 Score=186.36 Aligned_cols=158 Identities=16% Similarity=0.181 Sum_probs=122.6
Q ss_pred ccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh----------hhc
Q 017295 15 RPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC----------QLF 80 (374)
Q Consensus 15 ~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~----------~~~ 80 (374)
..+|+++++. ..+||+||||||||||+|+|+|+ ..|++|.|.++|.++..+. ..|
T Consensus 41 ~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL-----------~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~ 109 (366)
T 3tui_C 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL-----------ERPTEGSVLVDGQELTTLSESELTKARRQIGM 109 (366)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEECSSCCHHHHHHHHTTEEE
T ss_pred eEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcC-----------CCCCceEEEECCEECCcCCHHHHHHHhCcEEE
Confidence 4689998864 55999999999999999999999 8899999999998764321 257
Q ss_pred cCCCC-ccccchHhhHhhhhccccCCCC-----------------CCCCCceeEecC------------CCCCchhHHHH
Q 017295 81 KPKSA-VPAFLEIHDIAGLVRGAHEGQG-----------------AFEDPDIIHVDD------------SVDPVRDLEVI 130 (374)
Q Consensus 81 ~~~~~-~~~~~~v~D~~gl~~~~~~~~~-----------------~~~~~~il~l~~------------~~dP~~~l~il 130 (374)
.+|.. +++.+++.|++.+......... .+.+..+-.+++ +.+| +++++
T Consensus 110 v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P--~lLLl 187 (366)
T 3tui_C 110 IFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNP--KVLLC 187 (366)
T ss_dssp ECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCC--SEEEE
T ss_pred EeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCC--CEEEE
Confidence 78876 6677899998877533221100 112222223333 6789 99999
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 131 SAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 131 de~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
|||++++|+.....+++.+.++.++ +.+ |++..+..+||+| .+|++|+++..++.
T Consensus 188 DEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv-~vl~~G~iv~~g~~ 248 (366)
T 3tui_C 188 DQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCV-AVISNGELIEQDTV 248 (366)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEE-EEEETTEEEECCBH
T ss_pred ECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEE-EEEECCEEEEEcCH
Confidence 9999999999999999999988755 554 9999999999999 99999999977643
No 11
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.78 E-value=3.7e-21 Score=187.41 Aligned_cols=159 Identities=14% Similarity=0.121 Sum_probs=124.4
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-----hhccCCC
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS 84 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-----~~~~~~~ 84 (374)
++.+|+++++ |..++|+||||||||||+|+|+|+ .+|++|.|.++|+++.... ..|.+|.
T Consensus 15 ~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl-----------~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~ 83 (381)
T 3rlf_A 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL-----------ETITSGDLFIGEKRMNDTPPAERGVGMVFQS 83 (381)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEECTTCCGGGSCEEEECTT
T ss_pred CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcC-----------CCCCCeEEEECCEECCCCCHHHCCEEEEecC
Confidence 4678998876 456999999999999999999999 8899999999998775432 2577887
Q ss_pred C-ccccchHhhHhhhhccccCCCC-----------------CCCCCceeEecC------------CCCCchhHHHHHHHH
Q 017295 85 A-VPAFLEIHDIAGLVRGAHEGQG-----------------AFEDPDIIHVDD------------SVDPVRDLEVISAEL 134 (374)
Q Consensus 85 ~-~~~~~~v~D~~gl~~~~~~~~~-----------------~~~~~~il~l~~------------~~dP~~~l~ilde~l 134 (374)
. +++.+++.|++.+......... .+.+..+-.+++ +.+| +++++|||+
T Consensus 84 ~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P--~lLLLDEPt 161 (381)
T 3rlf_A 84 YALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEP--SVFLLDEPL 161 (381)
T ss_dssp CCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCC--SEEEEESTT
T ss_pred CcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCC--CEEEEECCC
Confidence 6 7778999999887543221110 112222333333 5689 999999999
Q ss_pred HhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 135 RLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 135 ~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
+++|......++..+.++.++ +.+ |++.++..+||+| .+|++|+++..++.
T Consensus 162 s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri-~vl~~G~i~~~g~~ 218 (381)
T 3rlf_A 162 SNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKI-VVLDAGRVAQVGKP 218 (381)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEE-EEEETTEEEEEECH
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEE-EEEECCEEEEEeCH
Confidence 999999999999999888655 544 9999999999999 99999999877643
No 12
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.77 E-value=1.2e-20 Score=175.87 Aligned_cols=158 Identities=12% Similarity=0.141 Sum_probs=119.5
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchh-------hhh--hhc
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE-------WLC--QLF 80 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~-------~l~--~~~ 80 (374)
++.+|+++++ |..+||+||||||||||+++|+|+ ++|++|.|.++|.++. .+. ..|
T Consensus 36 ~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl-----------~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~ 104 (263)
T 2olj_A 36 SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLL-----------EDFDEGEIIIDGINLKAKDTNLNKVREEVGM 104 (263)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEESSSTTCCHHHHHHHEEE
T ss_pred CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcC-----------CCCCCcEEEECCEECCCccccHHHHhCcEEE
Confidence 4568998876 456999999999999999999999 8899999999997763 111 247
Q ss_pred cCCCC-ccccchHhhHhhhhc-cccCCCC-----------------CCCCCceeEecC------------CCCCchhHHH
Q 017295 81 KPKSA-VPAFLEIHDIAGLVR-GAHEGQG-----------------AFEDPDIIHVDD------------SVDPVRDLEV 129 (374)
Q Consensus 81 ~~~~~-~~~~~~v~D~~gl~~-~~~~~~~-----------------~~~~~~il~l~~------------~~dP~~~l~i 129 (374)
.+|.. +++.+++.|++.+.. ....... .+.+..+-.+++ +.+| ++++
T Consensus 105 v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p--~lll 182 (263)
T 2olj_A 105 VFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEP--KIML 182 (263)
T ss_dssp ECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCC--SEEE
T ss_pred EeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCC--CEEE
Confidence 78875 566778888887642 1111000 111222223333 6789 9999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 130 ISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 130 lde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+|||++++|+.....+++.+.++.+++.+ |++..+..+||++ .+|++|+++..++
T Consensus 183 LDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v-~~l~~G~i~~~g~ 242 (263)
T 2olj_A 183 FDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRV-LFMDGGYIIEEGK 242 (263)
T ss_dssp EESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEE-EEEETTEEEEEEC
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 99999999999999999999888765544 9999999999999 8999999886654
No 13
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.77 E-value=1.9e-20 Score=181.73 Aligned_cols=158 Identities=11% Similarity=0.159 Sum_probs=122.5
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-----hhccCCC
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS 84 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-----~~~~~~~ 84 (374)
++.+|+++++. ..++|+||||||||||+|+|+|+ ..|++|.|.++|.++.... ..|.+|.
T Consensus 15 ~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-----------~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~ 83 (362)
T 2it1_A 15 NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGI-----------YKPTSGKIYFDEKDVTELPPKDRNVGLVFQN 83 (362)
T ss_dssp SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEECTTSCGGGTTEEEECTT
T ss_pred CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcC-----------CCCCceEEEECCEECCcCCHhHCcEEEEecC
Confidence 45689888764 55999999999999999999999 8899999999998764322 2577887
Q ss_pred C-ccccchHhhHhhhhccccCCCC-----------------CCCCCceeEecC------------CCCCchhHHHHHHHH
Q 017295 85 A-VPAFLEIHDIAGLVRGAHEGQG-----------------AFEDPDIIHVDD------------SVDPVRDLEVISAEL 134 (374)
Q Consensus 85 ~-~~~~~~v~D~~gl~~~~~~~~~-----------------~~~~~~il~l~~------------~~dP~~~l~ilde~l 134 (374)
. +++++++.|++.+......... .+.+..+-.+++ +.+| +++++|||+
T Consensus 84 ~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P--~lLLLDEP~ 161 (362)
T 2it1_A 84 WALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEP--EVLLLDEPL 161 (362)
T ss_dssp CCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCC--SEEEEESGG
T ss_pred cccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCC--CEEEEECcc
Confidence 6 6778899999877532111000 222223333443 6789 999999999
Q ss_pred HhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 135 RLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 135 ~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+++|.......++.+.++.++ +.+ |++.++..+||++ .+|++|+++..++
T Consensus 162 s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri-~vl~~G~i~~~g~ 217 (362)
T 2it1_A 162 SNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRI-AVIREGEILQVGT 217 (362)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEE-EEEETTEEEEEEC
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEE-EEEECCEEEEEcC
Confidence 999999999999999887654 544 9999999999999 9999999987654
No 14
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.77 E-value=1.3e-20 Score=172.82 Aligned_cols=158 Identities=16% Similarity=0.162 Sum_probs=119.6
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh-----------hhh
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----------CQL 79 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l-----------~~~ 79 (374)
+.+|+++++ |..+||+||||||||||+++|+|+ +.|++|.|.++|.++... ...
T Consensus 18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl-----------~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~ 86 (235)
T 3tif_A 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCL-----------DKPTEGEVYIDNIKTNDLDDDELTKIRRDKIG 86 (235)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEECTTCCHHHHHHHHHHHEE
T ss_pred eeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcC-----------CCCCceEEEECCEEcccCCHHHHHHHhhccEE
Confidence 468998876 456999999999999999999999 889999999999876321 125
Q ss_pred ccCCCC-ccccchHhhHhhhhccccC--CCC---------------CC----CCCceeEecC------------CCCCch
Q 017295 80 FKPKSA-VPAFLEIHDIAGLVRGAHE--GQG---------------AF----EDPDIIHVDD------------SVDPVR 125 (374)
Q Consensus 80 ~~~~~~-~~~~~~v~D~~gl~~~~~~--~~~---------------~~----~~~~il~l~~------------~~dP~~ 125 (374)
|.+|.. +++.+++.|++.+...... +.. .+ .+..+..+++ +.+|
T Consensus 87 ~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p-- 164 (235)
T 3tif_A 87 FVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNP-- 164 (235)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCC--
T ss_pred EEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCC--
Confidence 778876 6667899998876432110 110 11 1222333443 6789
Q ss_pred hHHHHHHHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccCCC
Q 017295 126 DLEVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 187 (374)
Q Consensus 126 ~l~ilde~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~~ 187 (374)
+++++|||++++|+.....+++.+.++.++ +.+ |+++. ..+||++ .+|++|+++..++..
T Consensus 165 ~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~-~~~~d~i-~~l~~G~i~~~~~~~ 230 (235)
T 3tif_A 165 PIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINV-ARFGERI-IYLKDGEVEREEKLR 230 (235)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHH-HTTSSEE-EEEETTEEEEEEECC
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHH-HHhCCEE-EEEECCEEEEEcChh
Confidence 999999999999999999999999888654 554 99985 5789999 999999998766543
No 15
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.77 E-value=1.6e-20 Score=182.08 Aligned_cols=159 Identities=12% Similarity=0.112 Sum_probs=122.8
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-----hhccCCC
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS 84 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-----~~~~~~~ 84 (374)
++.+|+++++. ..++|+||||||||||+|+|+|+ .+|++|.|.++|.++.... ..|.+|.
T Consensus 15 ~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-----------~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~ 83 (359)
T 2yyz_A 15 KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGI-----------YKPTSGEIYFDDVLVNDIPPKYREVGMVFQN 83 (359)
T ss_dssp TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEECTTSCGGGTTEEEECSS
T ss_pred CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCC-----------CCCCccEEEECCEECCCCChhhCcEEEEecC
Confidence 45688888764 56999999999999999999999 8899999999998764332 2577887
Q ss_pred C-ccccchHhhHhhhhccccCC----CC-------------CCCCCceeEecC------------CCCCchhHHHHHHHH
Q 017295 85 A-VPAFLEIHDIAGLVRGAHEG----QG-------------AFEDPDIIHVDD------------SVDPVRDLEVISAEL 134 (374)
Q Consensus 85 ~-~~~~~~v~D~~gl~~~~~~~----~~-------------~~~~~~il~l~~------------~~dP~~~l~ilde~l 134 (374)
. +++++++.|++.+....... .. .+.+..+-.+++ +.+| +++++|||+
T Consensus 84 ~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P--~lLLLDEP~ 161 (359)
T 2yyz_A 84 YALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQP--KVLLFDEPL 161 (359)
T ss_dssp CCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCC--SEEEEESTT
T ss_pred cccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCC--CEEEEECCc
Confidence 6 67788999999875322110 00 112222233333 6789 999999999
Q ss_pred HhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 135 RLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 135 ~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
+++|.......++.+.++.++ +.+ |++.++..+||++ .+|++|+++..++.
T Consensus 162 s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri-~vl~~G~i~~~g~~ 218 (359)
T 2yyz_A 162 SNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRI-AVFNQGKLVQYGTP 218 (359)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEE-EEEETTEEEEEECH
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEE-EEEECCEEEEeCCH
Confidence 999999999999999887654 444 9999999999999 99999999876643
No 16
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.77 E-value=2.7e-20 Score=171.24 Aligned_cols=158 Identities=9% Similarity=0.048 Sum_probs=119.4
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh------h--hhcc
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------C--QLFK 81 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l------~--~~~~ 81 (374)
++.+|+++++. ..+||+||||||||||+++|+|+ ++|++|.|.++|.++... . ..|.
T Consensus 18 ~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 86 (240)
T 1ji0_A 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGL-----------VRAQKGKIIFNGQDITNKPAHVINRMGIALV 86 (240)
T ss_dssp TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEECTTCCHHHHHHTTEEEE
T ss_pred CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEECCCCCHHHHHhCCEEEE
Confidence 35689988864 56999999999999999999999 889999999999876321 1 2477
Q ss_pred CCCC-ccccchHhhHhhhhccccCCCC-----------------CCCCCceeEecC------------CCCCchhHHHHH
Q 017295 82 PKSA-VPAFLEIHDIAGLVRGAHEGQG-----------------AFEDPDIIHVDD------------SVDPVRDLEVIS 131 (374)
Q Consensus 82 ~~~~-~~~~~~v~D~~gl~~~~~~~~~-----------------~~~~~~il~l~~------------~~dP~~~l~ild 131 (374)
+|.. ++..+++.|++.+......... .+.+..+-.+++ +.+| +++++|
T Consensus 87 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p--~lllLD 164 (240)
T 1ji0_A 87 PEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRP--KLLMMD 164 (240)
T ss_dssp CSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCC--SEEEEE
T ss_pred ecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCC--CEEEEc
Confidence 8876 5667789888877531111100 011122222332 6789 999999
Q ss_pred HHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 132 AELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 132 e~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
||++++|+.....+++.+.++.+++.+ |++..+..+||++ .+|++|+++..++
T Consensus 165 EPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v-~~l~~G~i~~~g~ 222 (240)
T 1ji0_A 165 EPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYG-YVLETGQIVLEGK 222 (240)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEE-EEEETTEEEEEEE
T ss_pred CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEE-EEEECCEEEEEcC
Confidence 999999999999999999888655554 9999999999999 8899999886553
No 17
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.77 E-value=1.1e-20 Score=176.13 Aligned_cols=158 Identities=15% Similarity=0.210 Sum_probs=119.5
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhh--------------
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------------- 75 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~-------------- 75 (374)
++.+|+++++. ..+||+||||||||||+++|+|+ +.|++|.|.++|.++..
T Consensus 18 ~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 86 (262)
T 1b0u_A 18 GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFL-----------EKPSEGAIIVNGQNINLVRDKDGQLKVADKN 86 (262)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEECCEEECTTSSEEESCHH
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECCEEccccccccccccccChh
Confidence 45689988764 56999999999999999999999 88999999999977631
Q ss_pred ----hh--hhccCCCC-ccccchHhhHhhhhc-cccCCCC--------------C---C-CCCceeEecC----------
Q 017295 76 ----LC--QLFKPKSA-VPAFLEIHDIAGLVR-GAHEGQG--------------A---F-EDPDIIHVDD---------- 119 (374)
Q Consensus 76 ----l~--~~~~~~~~-~~~~~~v~D~~gl~~-~~~~~~~--------------~---~-~~~~il~l~~---------- 119 (374)
.. ..|.+|.. +++.+++.|++.+.. ....... . + .+..+-.+++
T Consensus 87 ~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAr 166 (262)
T 1b0u_A 87 QLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIAR 166 (262)
T ss_dssp HHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHH
T ss_pred hHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHH
Confidence 11 24778775 666778888887642 1111000 1 1 1222223333
Q ss_pred --CCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 120 --SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 120 --~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+.+| +++++|||++++|+.....+++.+.++.+++.+ |++..+..+||++ .+|++|+++..++
T Consensus 167 aL~~~p--~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v-~~l~~G~i~~~g~ 236 (262)
T 1b0u_A 167 ALAMEP--DVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHV-IFLHQGKIEEEGD 236 (262)
T ss_dssp HHHTCC--SEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEE-EEEETTEEEEEEC
T ss_pred HHhcCC--CEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 5789 999999999999999999999999888765554 9999999999999 8999999886654
No 18
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.77 E-value=1.6e-20 Score=181.74 Aligned_cols=158 Identities=14% Similarity=0.144 Sum_probs=121.9
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-----hhccCCC
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS 84 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-----~~~~~~~ 84 (374)
++.+|+++++. ..++|+||||||||||+|+|+|+ ..|++|.|.++|.++.... ..|.+|.
T Consensus 27 ~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-----------~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~ 95 (355)
T 1z47_A 27 GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGL-----------ERPTKGDVWIGGKRVTDLPPQKRNVGLVFQN 95 (355)
T ss_dssp STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEECTTCCGGGSSEEEECGG
T ss_pred CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCccEEEECCEECCcCChhhCcEEEEecC
Confidence 45789998864 55999999999999999999999 8899999999998764322 2477777
Q ss_pred C-ccccchHhhHhhhhccccCCCC-----------------CCCCCceeEecC------------CCCCchhHHHHHHHH
Q 017295 85 A-VPAFLEIHDIAGLVRGAHEGQG-----------------AFEDPDIIHVDD------------SVDPVRDLEVISAEL 134 (374)
Q Consensus 85 ~-~~~~~~v~D~~gl~~~~~~~~~-----------------~~~~~~il~l~~------------~~dP~~~l~ilde~l 134 (374)
. +++.+++.|++.+......... .+.+..+-.+++ +.+| +++++|||+
T Consensus 96 ~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P--~lLLLDEP~ 173 (355)
T 1z47_A 96 YALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRP--QVLLFDEPF 173 (355)
T ss_dssp GCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCC--SEEEEESTT
T ss_pred cccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCC--CEEEEeCCc
Confidence 6 6778899999877532211000 112222233333 6789 999999999
Q ss_pred HhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 135 RLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 135 ~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+++|......+++.+.++.++ +.+ |++.++..+||++ .+|++|+++..++
T Consensus 174 s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri-~vl~~G~i~~~g~ 229 (355)
T 1z47_A 174 AAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRV-LVLHEGNVEQFGT 229 (355)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEE-EEEETTEEEEEEC
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEE-EEEECCEEEEEcC
Confidence 999999999999999887654 444 9999999999999 9999999987654
No 19
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.76 E-value=1.2e-20 Score=175.27 Aligned_cols=159 Identities=15% Similarity=0.110 Sum_probs=121.1
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh--------hhhcc
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------CQLFK 81 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l--------~~~~~ 81 (374)
++.+|+++++. ..+||+||||||||||+|+|+|. +.|++|.|.++|.++... ...|.
T Consensus 19 ~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 87 (257)
T 1g6h_A 19 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGF-----------LKADEGRVYFENKDITNKEPAELYHYGIVRT 87 (257)
T ss_dssp TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEECTTCCHHHHHHHTEEEC
T ss_pred CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEECCCCCHHHHHhCCEEEE
Confidence 45689998875 45999999999999999999999 889999999999876431 12577
Q ss_pred CCCC-ccccchHhhHhhhhccc-cCC------------CC-----------------CCCCCceeEecC-----------
Q 017295 82 PKSA-VPAFLEIHDIAGLVRGA-HEG------------QG-----------------AFEDPDIIHVDD----------- 119 (374)
Q Consensus 82 ~~~~-~~~~~~v~D~~gl~~~~-~~~------------~~-----------------~~~~~~il~l~~----------- 119 (374)
+|.. +++.+++.|++.+.... ..+ .. .+.+..+-.+++
T Consensus 88 ~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAra 167 (257)
T 1g6h_A 88 FQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRA 167 (257)
T ss_dssp CCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHH
T ss_pred ccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHH
Confidence 8876 56678999988775322 111 00 111222222333
Q ss_pred -CCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 120 -SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 120 -~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
+.+| +++++|||++++|+.....+++.+.++.+++.+ |++..+..+||++ .+|++|+++..++.
T Consensus 168 L~~~p--~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v-~~l~~G~i~~~g~~ 237 (257)
T 1g6h_A 168 LMTNP--KMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHL-YVMFNGQIIAEGRG 237 (257)
T ss_dssp HHTCC--SEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEE-EEEETTEEEEEEES
T ss_pred HHcCC--CEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEE-EEEECCEEEEEeCH
Confidence 5789 999999999999999999999999888755554 9999988999999 89999999876654
No 20
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.76 E-value=1.9e-20 Score=170.59 Aligned_cols=156 Identities=19% Similarity=0.102 Sum_probs=116.6
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh-----------hh
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----------CQ 78 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l-----------~~ 78 (374)
++.+|+++++. ..+||+||||||||||+++|+|+ ++|++|.|.++|.++... ..
T Consensus 16 ~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i 84 (224)
T 2pcj_A 16 GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLL-----------DAPTEGKVFLEGKEVDYTNEKELSLLRNRKL 84 (224)
T ss_dssp TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTS-----------SCCSEEEEEETTEECCSSCHHHHHHHHHHHE
T ss_pred CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCEECCCCCHHHHHHHHhCcE
Confidence 35689998864 45999999999999999999999 889999999999876321 12
Q ss_pred hccCCCC-ccccchHhhHhhhhccccCCC------C-----------CCCCCceeEecC------------CCCCchhHH
Q 017295 79 LFKPKSA-VPAFLEIHDIAGLVRGAHEGQ------G-----------AFEDPDIIHVDD------------SVDPVRDLE 128 (374)
Q Consensus 79 ~~~~~~~-~~~~~~v~D~~gl~~~~~~~~------~-----------~~~~~~il~l~~------------~~dP~~~l~ 128 (374)
.|.+|.. +++.+++.|++.+....+... . .+.+..+-.+++ +.+| +++
T Consensus 85 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p--~ll 162 (224)
T 2pcj_A 85 GFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEP--ILL 162 (224)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCC--SEE
T ss_pred EEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCC--CEE
Confidence 5777775 566678888876643211100 0 111222223333 6789 999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceecc
Q 017295 129 VISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLG 184 (374)
Q Consensus 129 ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~ 184 (374)
++|||++++|+......++.+.++.+++.+ |++..+ .+||++ .+|++|+++..+
T Consensus 163 lLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v-~~l~~G~i~~~g 221 (224)
T 2pcj_A 163 FADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-ELTHRT-LEMKDGKVVGEI 221 (224)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TTSSEE-EEEETTEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCCEE-EEEECCEEEEEe
Confidence 999999999999999999999888766554 998876 789999 888999887654
No 21
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.76 E-value=2.4e-20 Score=181.58 Aligned_cols=158 Identities=15% Similarity=0.193 Sum_probs=118.2
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-----hhccCCC
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS 84 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-----~~~~~~~ 84 (374)
++.+|+++++. ..++|+||||||||||+|+|+|+ .+|++|.|.++|.++..+. ..|.+|.
T Consensus 23 ~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-----------~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~ 91 (372)
T 1v43_A 23 NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGL-----------EEPTEGRIYFGDRDVTYLPPKDRNISMVFQS 91 (372)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEECTTSCGGGGTEEEEEC-
T ss_pred CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcC-----------CCCCceEEEECCEECCCCChhhCcEEEEecC
Confidence 45688888764 55999999999999999999999 8899999999998764322 2577777
Q ss_pred C-ccccchHhhHhhhhccccCCCC-----------------CCCCCceeEecC------------CCCCchhHHHHHHHH
Q 017295 85 A-VPAFLEIHDIAGLVRGAHEGQG-----------------AFEDPDIIHVDD------------SVDPVRDLEVISAEL 134 (374)
Q Consensus 85 ~-~~~~~~v~D~~gl~~~~~~~~~-----------------~~~~~~il~l~~------------~~dP~~~l~ilde~l 134 (374)
. +++++++.|++.+......... .+.+..+-.+++ +.+| +++++|||+
T Consensus 92 ~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P--~lLLLDEP~ 169 (372)
T 1v43_A 92 YAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEP--DVLLMDEPL 169 (372)
T ss_dssp -----CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCC--SEEEEESTT
T ss_pred cccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCC--CEEEEcCCC
Confidence 6 6778899999887532211000 112222233443 6789 999999999
Q ss_pred HhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 135 RLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 135 ~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+++|......++..+.++.++ +.+ |++.++..+||++ .+|++|+++..++
T Consensus 170 s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri-~vl~~G~i~~~g~ 225 (372)
T 1v43_A 170 SNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRI-AVMNRGQLLQIGS 225 (372)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEE-EEEETTEEEEEEC
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 999999999999999887654 444 9999999999999 9999999987654
No 22
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.76 E-value=8.8e-21 Score=177.77 Aligned_cols=159 Identities=14% Similarity=0.135 Sum_probs=120.0
Q ss_pred ccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchh--h-----hh--hhcc
Q 017295 15 RPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE--W-----LC--QLFK 81 (374)
Q Consensus 15 ~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~--~-----l~--~~~~ 81 (374)
+.+|+++++. ..+||+||||||||||+++|+|+ +.|++|.|.++|.++. . +. ..|.
T Consensus 21 ~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl-----------~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v 89 (275)
T 3gfo_A 21 THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGI-----------LKPSSGRILFDNKPIDYSRKGIMKLRESIGIV 89 (275)
T ss_dssp CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEECCCSHHHHHHHHHSEEEE
T ss_pred CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcC-----------CCCCCeEEEECCEECCcccccHHHHhCcEEEE
Confidence 4589998864 55999999999999999999999 8899999999998762 1 11 1477
Q ss_pred CCCC--ccccchHhhHhhhhccccCCCC-----------------CCCCCceeEecC------------CCCCchhHHHH
Q 017295 82 PKSA--VPAFLEIHDIAGLVRGAHEGQG-----------------AFEDPDIIHVDD------------SVDPVRDLEVI 130 (374)
Q Consensus 82 ~~~~--~~~~~~v~D~~gl~~~~~~~~~-----------------~~~~~~il~l~~------------~~dP~~~l~il 130 (374)
+|.. .....++.|++.+......... .+.+..+..+++ +.+| +++++
T Consensus 90 ~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P--~lLlL 167 (275)
T 3gfo_A 90 FQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEP--KVLIL 167 (275)
T ss_dssp CSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCC--SEEEE
T ss_pred EcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCC--CEEEE
Confidence 7753 2335788888876532211000 112223333333 6789 99999
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHH-HccCc-----cchHHHHHHHHHHHHHHhCCCceeccCCC
Q 017295 131 SAELRLKDIEFMERRIEDVEKSM-KRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 187 (374)
Q Consensus 131 de~l~~~D~~~~~~~~~~i~~~~-~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~~ 187 (374)
|||++++|+.....+++.+.++. +++.+ |++..+..+||++ .+|++|+++..++..
T Consensus 168 DEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv-~~l~~G~i~~~g~~~ 229 (275)
T 3gfo_A 168 DEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNV-FVMKEGRVILQGNPK 229 (275)
T ss_dssp ECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEE-EEEETTEEEEEECHH
T ss_pred ECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEE-EEEECCEEEEECCHH
Confidence 99999999999999999998886 44554 9999999999999 999999999877543
No 23
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.75 E-value=2.7e-20 Score=181.40 Aligned_cols=159 Identities=14% Similarity=0.129 Sum_probs=122.5
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhh------hh-----h
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW------LC-----Q 78 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~------l~-----~ 78 (374)
++.+|+++++. ..++|+||||||||||+|+|+|+ ..|++|.|.++|.++.. +. .
T Consensus 15 ~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-----------~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~i 83 (372)
T 1g29_1 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGL-----------EEPSRGQIYIGDKLVADPEKGIFVPPKDRDI 83 (372)
T ss_dssp TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEEEEEGGGTEECCGGGSSE
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcC-----------CCCCccEEEECCEECccccccccCCHhHCCE
Confidence 45689988865 45999999999999999999999 88999999999987643 21 2
Q ss_pred hccCCCC-ccccchHhhHhhhhccccCCCC-----------------CCCCCceeEecC------------CCCCchhHH
Q 017295 79 LFKPKSA-VPAFLEIHDIAGLVRGAHEGQG-----------------AFEDPDIIHVDD------------SVDPVRDLE 128 (374)
Q Consensus 79 ~~~~~~~-~~~~~~v~D~~gl~~~~~~~~~-----------------~~~~~~il~l~~------------~~dP~~~l~ 128 (374)
.|.+|.. +++++++.|++.+......... .+.+..+-.+++ +.+| +++
T Consensus 84 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P--~lL 161 (372)
T 1g29_1 84 AMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKP--QVF 161 (372)
T ss_dssp EEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCC--SEE
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCC--CEE
Confidence 5778876 6778899999887532211000 112222333333 5789 999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 129 VISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 129 ilde~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
++|||++++|......++..+.++.++ +.+ |++.++..+||++ .+|++|+++..++.
T Consensus 162 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri-~vl~~G~i~~~g~~ 224 (372)
T 1g29_1 162 LMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRI-AVMNRGVLQQVGSP 224 (372)
T ss_dssp EEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEE-EEEETTEEEEEECH
T ss_pred EECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEE-EEEeCCEEEEeCCH
Confidence 999999999999999999999887654 444 9999999999999 99999999876643
No 24
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.75 E-value=1.5e-20 Score=174.56 Aligned_cols=158 Identities=17% Similarity=0.220 Sum_probs=118.7
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhh----hh--hhccCC
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW----LC--QLFKPK 83 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~----l~--~~~~~~ 83 (374)
++.+|+++++ |..+||+||||||||||+++|+|+ +.|++|.|.++|.++.. .. ..|.+|
T Consensus 27 ~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl-----------~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q 95 (256)
T 1vpl_A 27 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTL-----------IKPSSGIVTVFGKNVVEEPHEVRKLISYLPE 95 (256)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEETTTCHHHHHTTEEEECT
T ss_pred CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCEECCccHHHHhhcEEEEcC
Confidence 4568998876 456999999999999999999999 88999999999987632 11 247777
Q ss_pred CC-ccccchHhhHhhhhccccCCC------C-----------CCCCCceeEecC------------CCCCchhHHHHHHH
Q 017295 84 SA-VPAFLEIHDIAGLVRGAHEGQ------G-----------AFEDPDIIHVDD------------SVDPVRDLEVISAE 133 (374)
Q Consensus 84 ~~-~~~~~~v~D~~gl~~~~~~~~------~-----------~~~~~~il~l~~------------~~dP~~~l~ilde~ 133 (374)
.. +++.+++.|++.+........ . .+.+..+-.+++ +.+| +++++|||
T Consensus 96 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p--~lllLDEP 173 (256)
T 1vpl_A 96 EAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNP--RLAILDEP 173 (256)
T ss_dssp TCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCC--SEEEEEST
T ss_pred CCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCC--CEEEEeCC
Confidence 75 566678888876643211100 0 111122222332 6789 99999999
Q ss_pred HHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 134 LRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 134 l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
++++|+.....+++.+.++.+++.+ |++..+..+||++ .+|++|+++..++
T Consensus 174 ts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v-~~l~~G~i~~~g~ 229 (256)
T 1vpl_A 174 TSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRI-ALIHNGTIVETGT 229 (256)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEE-EEEETTEEEEEEE
T ss_pred ccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEE-EEEECCEEEEecC
Confidence 9999999999999999888755554 9999999999999 8899999886553
No 25
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.75 E-value=4e-20 Score=178.62 Aligned_cols=155 Identities=15% Similarity=0.189 Sum_probs=120.6
Q ss_pred ccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-----hhccCCCC-c
Q 017295 17 ILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKSA-V 86 (374)
Q Consensus 17 vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-----~~~~~~~~-~ 86 (374)
+|+++++. ..++|+||||||||||+|+|+|+ ..|++|.|.++|.++.... ..|.+|.. +
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-----------~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l 83 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGF-----------HVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSL 83 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTS-----------SCCSEEEEEETTEECTTSCHHHHTCEEECTTCCC
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcC-----------CCCCCcEEEECCEECCCCchhhCcEEEEecCccc
Confidence 88888764 56999999999999999999999 8899999999998764322 25778876 6
Q ss_pred cccchHhhHhhhhccccCC---CC-----------CCCCCceeEecC------------CCCCchhHHHHHHHHHhhcHH
Q 017295 87 PAFLEIHDIAGLVRGAHEG---QG-----------AFEDPDIIHVDD------------SVDPVRDLEVISAELRLKDIE 140 (374)
Q Consensus 87 ~~~~~v~D~~gl~~~~~~~---~~-----------~~~~~~il~l~~------------~~dP~~~l~ilde~l~~~D~~ 140 (374)
++++++.|++.+....... .. .+.+..+-.+++ +.+| +++++|||++++|..
T Consensus 84 ~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P--~lLLLDEP~s~LD~~ 161 (348)
T 3d31_A 84 FPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNP--KILLLDEPLSALDPR 161 (348)
T ss_dssp CTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCC--SEEEEESSSTTSCHH
T ss_pred CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCC--CEEEEECccccCCHH
Confidence 7788999998775321110 00 122222333333 6789 999999999999999
Q ss_pred HHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 141 FMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 141 ~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
....+++.+.++.++ +.+ |++.++..+||++ .+|++|+++..++
T Consensus 162 ~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri-~vl~~G~i~~~g~ 211 (348)
T 3d31_A 162 TQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRI-AVVMDGKLIQVGK 211 (348)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEE-EEESSSCEEEEEC
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 999999999888654 444 9999999999999 9999999987654
No 26
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.74 E-value=2.7e-20 Score=180.32 Aligned_cols=155 Identities=15% Similarity=0.133 Sum_probs=120.3
Q ss_pred ccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhh-----hh-----hhccC
Q 017295 17 ILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LC-----QLFKP 82 (374)
Q Consensus 17 vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~-----l~-----~~~~~ 82 (374)
+|+++++ |..++|+||||||||||+|+|+|+ ..|++|.|.++|.++.. .. ..|.+
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-----------~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~ 88 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGL-----------DVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVF 88 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTS-----------SCCSEEEEEETTEEEEETTEESSCGGGSCEEEEE
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCceEEEECCEECcccccccCChhhCCEEEEe
Confidence 8888876 456999999999999999999999 88999999999987643 21 14777
Q ss_pred CCC-ccccchHhhHhhhhccccCCCC-----------------CCCCCceeEecC------------CCCCchhHHHHHH
Q 017295 83 KSA-VPAFLEIHDIAGLVRGAHEGQG-----------------AFEDPDIIHVDD------------SVDPVRDLEVISA 132 (374)
Q Consensus 83 ~~~-~~~~~~v~D~~gl~~~~~~~~~-----------------~~~~~~il~l~~------------~~dP~~~l~ilde 132 (374)
|.. +++.+++.|++.+......... .+.+..+-.+++ +.+| +++++||
T Consensus 89 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P--~lLLLDE 166 (353)
T 1oxx_K 89 QTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDP--SLLLLDE 166 (353)
T ss_dssp TTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCC--SEEEEES
T ss_pred CCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCC--CEEEEEC
Confidence 876 6778899999887543221000 112222233333 6789 9999999
Q ss_pred HHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 133 ELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 133 ~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
|++++|.......++.+.++.++ +.+ |++.++..+||++ .+|++|+++..++
T Consensus 167 P~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri-~vl~~G~i~~~g~ 224 (353)
T 1oxx_K 167 PFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRV-GVLVKGKLVQVGK 224 (353)
T ss_dssp TTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEE-EEEETTEEEEEEC
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEEcC
Confidence 99999999999999999887654 544 9999999999999 9999999987654
No 27
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.74 E-value=8.6e-20 Score=167.83 Aligned_cols=155 Identities=15% Similarity=0.175 Sum_probs=117.0
Q ss_pred ccccccCC---ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-----hhccCCCC-cc
Q 017295 17 ILGRFSSH---LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKSA-VP 87 (374)
Q Consensus 17 vL~~i~~~---~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-----~~~~~~~~-~~ 87 (374)
+|+++++. ..+||+||||||||||+++|+|. +.|++|.|.++|.++.... ..|.+|.. ++
T Consensus 14 ~l~~isl~i~~e~~~liG~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~ 82 (240)
T 2onk_A 14 FRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGI-----------VKPDRGEVRLNGADITPLPPERRGIGFVPQDYALF 82 (240)
T ss_dssp EEEEEEEEECSSEEEEECCTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCC
T ss_pred EEeeeEEEECCEEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEECCcCchhhCcEEEEcCCCccC
Confidence 47777654 47999999999999999999999 8899999999997764321 25777775 56
Q ss_pred ccchHhhHhhhhccccC---CCC------------CCCCCceeEecC------------CCCCchhHHHHHHHHHhhcHH
Q 017295 88 AFLEIHDIAGLVRGAHE---GQG------------AFEDPDIIHVDD------------SVDPVRDLEVISAELRLKDIE 140 (374)
Q Consensus 88 ~~~~v~D~~gl~~~~~~---~~~------------~~~~~~il~l~~------------~~dP~~~l~ilde~l~~~D~~ 140 (374)
+.+++.|++.+...... ... .+.+..+-.+++ +.+| +++++|||++++|+.
T Consensus 83 ~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p--~lllLDEPts~LD~~ 160 (240)
T 2onk_A 83 PHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQP--RLLLLDEPLSAVDLK 160 (240)
T ss_dssp TTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCC--SSBEEESTTSSCCHH
T ss_pred CCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCC--CEEEEeCCcccCCHH
Confidence 67788888876432110 000 112222233333 6789 999999999999999
Q ss_pred HHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 141 FMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 141 ~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
.....++.+.++.++ +.+ |++..+..+||++ .+|++|+++..++
T Consensus 161 ~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i-~~l~~G~i~~~g~ 210 (240)
T 2onk_A 161 TKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEV-AVMLNGRIVEKGK 210 (240)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEE-EEEETTEEEEEEC
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 999999999887654 544 9999999999999 8999999886654
No 28
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.72 E-value=1.3e-19 Score=167.48 Aligned_cols=155 Identities=14% Similarity=0.126 Sum_probs=116.0
Q ss_pred cccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-------hhccCCC
Q 017295 16 PILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKS 84 (374)
Q Consensus 16 ~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-------~~~~~~~ 84 (374)
.+|+++++ |..++|+||||||||||+++|+|. ++|+ |.|.++|.++.... ..|.+|.
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl-----------~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~ 81 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-----------TSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQ 81 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS-----------SCCE-EEEEETTEEGGGSCHHHHHHHEEEECSC
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCC-eEEEECCEECCcCCHHHHhceEEEECCC
Confidence 57888776 456999999999999999999999 8899 99999998764321 2577777
Q ss_pred C-ccccchHhhHhhhhccccCCCC------------CCCCCceeEecC------------CCCCchh-------HHHHHH
Q 017295 85 A-VPAFLEIHDIAGLVRGAHEGQG------------AFEDPDIIHVDD------------SVDPVRD-------LEVISA 132 (374)
Q Consensus 85 ~-~~~~~~v~D~~gl~~~~~~~~~------------~~~~~~il~l~~------------~~dP~~~-------l~ilde 132 (374)
. ++..+++.|++.+......... .+.+..+-.+++ +.+| + ++++||
T Consensus 82 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p--~~~~~~~~lllLDE 159 (249)
T 2qi9_C 82 QTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQIT--PQANPAGQLLLLDE 159 (249)
T ss_dssp CCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHC--TTTCTTCCEEEESS
T ss_pred CccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCC--CcCCCCCeEEEEEC
Confidence 6 5566788888876431110000 111222223333 4567 7 999999
Q ss_pred HHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 133 ELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 133 ~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
|++++|+.....+++.+.++.+++.+ |++..+..+||++ .+|++|+++..++
T Consensus 160 Pts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v-~~l~~G~i~~~g~ 216 (249)
T 2qi9_C 160 PMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRA-WLLKGGKMLASGR 216 (249)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEE-EEEETTEEEEEEE
T ss_pred CcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 99999999999999999888655544 9999999999999 8899999886554
No 29
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.70 E-value=1.9e-17 Score=163.57 Aligned_cols=68 Identities=32% Similarity=0.629 Sum_probs=55.8
Q ss_pred cccCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhh
Q 017295 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (374)
Q Consensus 20 ~i~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~ 99 (374)
.+..+..|+|||+||||||||||+|++..+.+++|||||+.|+.|.+.+++. ..+.+.|++++.
T Consensus 153 elk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~----------------~~~~l~DtpGli 216 (416)
T 1udx_A 153 ELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEE----------------ERFTLADIPGII 216 (416)
T ss_dssp EECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSS----------------CEEEEEECCCCC
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCc----------------ceEEEEeccccc
Confidence 3445566999999999999999999999888899999999999999988651 126777888876
Q ss_pred cccc
Q 017295 100 RGAH 103 (374)
Q Consensus 100 ~~~~ 103 (374)
..++
T Consensus 217 ~~a~ 220 (416)
T 1udx_A 217 EGAS 220 (416)
T ss_dssp CCGG
T ss_pred cchh
Confidence 5443
No 30
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.68 E-value=3e-19 Score=169.67 Aligned_cols=157 Identities=17% Similarity=0.164 Sum_probs=116.9
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-------hhccC
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKP 82 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-------~~~~~ 82 (374)
.+.+|+++++ |..+|||||||||||||+++|+|. ++|++|.|.++|.++..+. ..|.+
T Consensus 66 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl-----------~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~ 134 (306)
T 3nh6_A 66 GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRF-----------YDISSGCIRIDGQDISQVTQASLRSHIGVVP 134 (306)
T ss_dssp TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTS-----------SCCSEEEEEETTEETTSBCHHHHHHTEEEEC
T ss_pred CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcC-----------CCCCCcEEEECCEEcccCCHHHHhcceEEEe
Confidence 4568998876 456999999999999999999999 8899999999998875432 25788
Q ss_pred CCCccccchHhhHhhhhccccCCCC---------------CCC-------CCceeEecC------------CCCCchhHH
Q 017295 83 KSAVPAFLEIHDIAGLVRGAHEGQG---------------AFE-------DPDIIHVDD------------SVDPVRDLE 128 (374)
Q Consensus 83 ~~~~~~~~~v~D~~gl~~~~~~~~~---------------~~~-------~~~il~l~~------------~~dP~~~l~ 128 (374)
|.......++.|++.++........ .+. ......+++ ..+| +++
T Consensus 135 Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p--~iL 212 (306)
T 3nh6_A 135 QDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAP--GII 212 (306)
T ss_dssp SSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCC--SEE
T ss_pred cCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCC--CEE
Confidence 8874335689998877532111000 000 001112222 4588 999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 129 VISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 129 ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
++|||++++|......+++.+.++. ++.+ |++..+.. ||+| .+|++|+++..++.
T Consensus 213 lLDEPts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~~~~~-aD~i-~vl~~G~iv~~G~~ 272 (306)
T 3nh6_A 213 LLDEATSALDTSNERAIQASLAKVC-ANRTTIVVAHRLSTVVN-ADQI-LVIKDGCIVERGRH 272 (306)
T ss_dssp EEECCSSCCCHHHHHHHHHHHHHHH-TTSEEEEECCSHHHHHT-CSEE-EEEETTEEEEEECH
T ss_pred EEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEEcChHHHHc-CCEE-EEEECCEEEEECCH
Confidence 9999999999999999998888775 3444 99998876 9999 99999999987753
No 31
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.68 E-value=6.9e-19 Score=164.26 Aligned_cols=157 Identities=20% Similarity=0.157 Sum_probs=117.7
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh----hhhccCCCC-
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----CQLFKPKSA- 85 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l----~~~~~~~~~- 85 (374)
+.+|+++++ |..+||+|+||||||||+++|+|+ ++|++|.|.++|.++... ...|.+|..
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl-----------~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~ 88 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGL-----------IEPTSGDVLYDGERKKGYEIRRNIGIAFQYPE 88 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEECCHHHHGGGEEEECSSGG
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCCcEEEECCEECchHHhhhhEEEEeccch
Confidence 568998886 456999999999999999999999 889999999999876321 125777763
Q ss_pred -ccccchHhhHhhhhccc--cCCCC-----------CCC-----CCceeEecC------------CCCCchhHHHHHHHH
Q 017295 86 -VPAFLEIHDIAGLVRGA--HEGQG-----------AFE-----DPDIIHVDD------------SVDPVRDLEVISAEL 134 (374)
Q Consensus 86 -~~~~~~v~D~~gl~~~~--~~~~~-----------~~~-----~~~il~l~~------------~~dP~~~l~ilde~l 134 (374)
.+..+++.|++.+.... ..... .+. +..+-.+++ +.+| +++++|||+
T Consensus 89 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p--~lllLDEPt 166 (266)
T 2yz2_A 89 DQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEP--DILILDEPL 166 (266)
T ss_dssp GGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCC--SEEEEESTT
T ss_pred hhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCC--CEEEEcCcc
Confidence 44557888888764321 11110 111 112222333 6799 999999999
Q ss_pred HhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 135 RLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 135 ~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+++|+.....+++.+.++.+++.+ |++..+..+||++ .+|++|+++..++
T Consensus 167 s~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v-~~l~~G~i~~~g~ 221 (266)
T 2yz2_A 167 VGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRV-VVLEKGKKVFDGT 221 (266)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEE-EEEETTEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 999999999999999888655544 9999888899999 8899999886553
No 32
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.67 E-value=2.4e-18 Score=159.44 Aligned_cols=151 Identities=14% Similarity=0.210 Sum_probs=111.9
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCC-ccc
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSA-VPA 88 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~-~~~ 88 (374)
++.+|+++++. ..+||+||||||||||+++|+|. ++|++|.|.+.. ...|.+|.. ++.
T Consensus 17 ~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~p~~G~I~~~~------~i~~v~q~~~~~~ 79 (253)
T 2nq2_C 17 ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGI-----------HRPIQGKIEVYQ------SIGFVPQFFSSPF 79 (253)
T ss_dssp TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTS-----------SCCSEEEEEECS------CEEEECSCCCCSS
T ss_pred CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEEec------cEEEEcCCCccCC
Confidence 45789998864 46999999999999999999999 889999998321 124666665 455
Q ss_pred cchHhhHhhhhccccCC----CC-----------------CCCCCceeEecC------------CCCCchhHHHHHHHHH
Q 017295 89 FLEIHDIAGLVRGAHEG----QG-----------------AFEDPDIIHVDD------------SVDPVRDLEVISAELR 135 (374)
Q Consensus 89 ~~~v~D~~gl~~~~~~~----~~-----------------~~~~~~il~l~~------------~~dP~~~l~ilde~l~ 135 (374)
.+++.|++.+......+ .. .+.+..+..+++ +.+| +++++|||++
T Consensus 80 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p--~lllLDEPts 157 (253)
T 2nq2_C 80 AYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASEC--KLILLDEPTS 157 (253)
T ss_dssp CCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTC--SEEEESSSST
T ss_pred CCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCC--CEEEEeCCcc
Confidence 67888888765321100 00 111222222333 5789 9999999999
Q ss_pred hhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 136 LKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 136 ~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
++|+.....+++.+.++.++ +.+ |++..+..+||++ .+|++|+ +..++
T Consensus 158 ~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v-~~l~~G~-~~~g~ 211 (253)
T 2nq2_C 158 ALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKT-LLLNKQN-FKFGE 211 (253)
T ss_dssp TSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEE-EEEETTE-EEEEE
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEE-EEEeCCe-EecCC
Confidence 99999999999999888755 544 9999999999999 8899999 76553
No 33
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.67 E-value=1.1e-18 Score=163.40 Aligned_cols=155 Identities=16% Similarity=0.157 Sum_probs=113.2
Q ss_pred ccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-------hhccCC
Q 017295 15 RPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPK 83 (374)
Q Consensus 15 ~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-------~~~~~~ 83 (374)
+.+|+++++. ..++|+|+||||||||+++|+|+ ++|++|.|.++|.++.... ..|.+|
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl-----------~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q 100 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNL-----------YQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQ 100 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEEGGGBCHHHHHHHEEEECS
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCCEEEECCEEcccCCHHHHhccEEEEec
Confidence 5689988764 56999999999999999999999 8899999999998764321 247788
Q ss_pred CC-ccccchHhhHhhhhccccCC-C---------C------CC-------CCCceeEecC------------CCCCchhH
Q 017295 84 SA-VPAFLEIHDIAGLVRGAHEG-Q---------G------AF-------EDPDIIHVDD------------SVDPVRDL 127 (374)
Q Consensus 84 ~~-~~~~~~v~D~~gl~~~~~~~-~---------~------~~-------~~~~il~l~~------------~~dP~~~l 127 (374)
.. ++. .++.|++.+....... . + .+ .+.....+++ +.+| ++
T Consensus 101 ~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p--~l 177 (271)
T 2ixe_A 101 EPLLFG-RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKP--RL 177 (271)
T ss_dssp SCCCCS-SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCC--SE
T ss_pred CCcccc-ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCC--CE
Confidence 76 443 5888888764321110 0 0 00 0111112222 6789 99
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 128 EVISAELRLKDIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 128 ~ilde~l~~~D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+++|||++++|+.....+++.+.++.++ +.+ |++..+.. ||++ .+|++|+++..++
T Consensus 178 llLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v-~~l~~G~i~~~g~ 239 (271)
T 2ixe_A 178 LILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHI-LFLKEGSVCEQGT 239 (271)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEE-EEEETTEEEEEEC
T ss_pred EEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEE-EEEECCEEEEECC
Confidence 9999999999999999999999876532 443 99988764 9999 8899999886654
No 34
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.67 E-value=6.9e-19 Score=162.51 Aligned_cols=155 Identities=18% Similarity=0.186 Sum_probs=113.0
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh-----h--hhccC
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C--QLFKP 82 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l-----~--~~~~~ 82 (374)
.+.+|+++++. ..+||+|+||||||||+++|+|+ ++|++|.|.++|.++... . ..|.+
T Consensus 21 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~ 89 (247)
T 2ff7_A 21 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF-----------YIPENGQVLIDGHDLALADPNWLRRQVGVVL 89 (247)
T ss_dssp SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEETTTSCHHHHHHHEEEEC
T ss_pred CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECCEEhhhCCHHHHHhcEEEEe
Confidence 45789998864 55999999999999999999999 889999999999876432 1 24778
Q ss_pred CCC-ccccchHhhHhhhhccccCCCC---------------CC-------CCCceeEecC------------CCCCchhH
Q 017295 83 KSA-VPAFLEIHDIAGLVRGAHEGQG---------------AF-------EDPDIIHVDD------------SVDPVRDL 127 (374)
Q Consensus 83 ~~~-~~~~~~v~D~~gl~~~~~~~~~---------------~~-------~~~~il~l~~------------~~dP~~~l 127 (374)
|.. ++ ..++.|++.+......... .+ .......+++ +.+| ++
T Consensus 90 Q~~~l~-~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p--~l 166 (247)
T 2ff7_A 90 QDNVLL-NRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP--KI 166 (247)
T ss_dssp SSCCCT-TSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCC--SE
T ss_pred CCCccc-cccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCC--CE
Confidence 776 33 3588888876421000000 00 0011122333 6789 99
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 128 EVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 128 ~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+++|||++++|+.....+++.+.++. ++.+ |++..+. .||++ .+|++|+++..++
T Consensus 167 llLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~~~-~~d~v-~~l~~G~i~~~g~ 226 (247)
T 2ff7_A 167 LIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLSTVK-NADRI-IVMEKGKIVEQGK 226 (247)
T ss_dssp EEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGGGT-TSSEE-EEEETTEEEEEEC
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHHHH-hCCEE-EEEECCEEEEECC
Confidence 99999999999999999999998874 4544 9988765 49999 8899999886654
No 35
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.66 E-value=5.4e-19 Score=166.05 Aligned_cols=158 Identities=16% Similarity=0.087 Sum_probs=113.9
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchh--hh-----h--hhc
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE--WL-----C--QLF 80 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~--~l-----~--~~~ 80 (374)
++.+|+++++. ..+||+||||||||||+|+|+|. ++|++|.|.++|.++. .. . ..|
T Consensus 33 ~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl-----------~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~ 101 (279)
T 2ihy_A 33 GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAY-----------EPATSGTVNLFGKMPGKVGYSAETVRQHIGF 101 (279)
T ss_dssp TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS-----------SCCSEEEEEETTBCCC---CCHHHHHTTEEE
T ss_pred CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCCeEEEECCEEcccccCCHHHHcCcEEE
Confidence 45689998864 55999999999999999999999 8899999999998764 21 1 146
Q ss_pred cCCCC---ccccchHhhHhhhhccc----cCCCC-----------------CCCCCceeEecC------------CCCCc
Q 017295 81 KPKSA---VPAFLEIHDIAGLVRGA----HEGQG-----------------AFEDPDIIHVDD------------SVDPV 124 (374)
Q Consensus 81 ~~~~~---~~~~~~v~D~~gl~~~~----~~~~~-----------------~~~~~~il~l~~------------~~dP~ 124 (374)
.+|.. ++..+++.|++.+.... ..... .+.+..+-.+++ +.+|
T Consensus 102 v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p- 180 (279)
T 2ihy_A 102 VSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQP- 180 (279)
T ss_dssp ECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCC-
T ss_pred EEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCC-
Confidence 66653 22235888887664211 00000 111222222332 5789
Q ss_pred hhHHHHHHHHHhhcHHHHHHHHHHHHHHHHcc--C-----ccchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 125 RDLEVISAELRLKDIEFMERRIEDVEKSMKRS--N-----DKQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 125 ~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~--~-----~H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+++++|||++++|+.....+++.+.++.+++ . +|++..+..+||++ .+|++|+++..++
T Consensus 181 -~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v-~~l~~G~i~~~g~ 246 (279)
T 2ihy_A 181 -QVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKI-LLLKDGQSIQQGA 246 (279)
T ss_dssp -SEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEE-EEEETTEEEEEEE
T ss_pred -CEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 9999999999999999999999998876543 3 29998888899999 8899999886654
No 36
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.65 E-value=2.8e-18 Score=155.03 Aligned_cols=143 Identities=14% Similarity=0.223 Sum_probs=105.3
Q ss_pred cccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh--hhccCCCC-ccc
Q 017295 16 PILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC--QLFKPKSA-VPA 88 (374)
Q Consensus 16 ~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~--~~~~~~~~-~~~ 88 (374)
.+|+++++. ..++|+||||||||||+++|+|. ++|++|.|.++|.++.... ..|.+|.. ++.
T Consensus 23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl-----------~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~ 91 (214)
T 1sgw_A 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTY-----------LKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPR 91 (214)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEEGGGGGGGEEEECSSCCCCT
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCC
Confidence 688888864 45999999999999999999999 8899999999998763111 24777775 556
Q ss_pred cchHhhHhhhhccccC-CC-C----------CCC--CCceeEecC------------CCCCchhHHHHHHHHHhhcHHHH
Q 017295 89 FLEIHDIAGLVRGAHE-GQ-G----------AFE--DPDIIHVDD------------SVDPVRDLEVISAELRLKDIEFM 142 (374)
Q Consensus 89 ~~~v~D~~gl~~~~~~-~~-~----------~~~--~~~il~l~~------------~~dP~~~l~ilde~l~~~D~~~~ 142 (374)
.+++.|++.+...... .. . .+. +..+..+++ +.+| +++++|||++++|+...
T Consensus 92 ~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p--~lllLDEPts~LD~~~~ 169 (214)
T 1sgw_A 92 KISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNA--EIYVLDDPVVAIDEDSK 169 (214)
T ss_dssp TSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCC--SEEEEESTTTTSCTTTH
T ss_pred CCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCC--CEEEEECCCcCCCHHHH
Confidence 6788888766432111 00 0 111 222223333 6789 99999999999999999
Q ss_pred HHHHHHHHHHHHccCc-----cchHHHHHHHHHH
Q 017295 143 ERRIEDVEKSMKRSND-----KQLKIEHELCQRV 171 (374)
Q Consensus 143 ~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v 171 (374)
..+++.+.+..+++.+ |++..+..+||++
T Consensus 170 ~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v 203 (214)
T 1sgw_A 170 HKVLKSILEILKEKGIVIISSREELSYCDVNENL 203 (214)
T ss_dssp HHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEG
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE
Confidence 9999999887655544 9888877777777
No 37
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.65 E-value=1.2e-18 Score=161.11 Aligned_cols=160 Identities=16% Similarity=0.115 Sum_probs=112.5
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh--------hhcc
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC--------QLFK 81 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~--------~~~~ 81 (374)
++.+|+++++. ..+||+|+||||||||+++|+|+.. ..|++|.|.++|.++.... ..|.
T Consensus 15 ~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~---------~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v 85 (250)
T 2d2e_A 15 GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPE---------YTVERGEILLDGENILELSPDERARKGLFLA 85 (250)
T ss_dssp TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTT---------CEEEEEEEEETTEECTTSCHHHHHHTTBCCC
T ss_pred CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---------CCCCceEEEECCEECCCCCHHHHHhCcEEEe
Confidence 35689988864 5699999999999999999999611 3589999999998764211 1366
Q ss_pred CCCC-ccccchHhhHhhhhccc-cC-CCC---------------CC----CCCceeE-ecC------------CCCCchh
Q 017295 82 PKSA-VPAFLEIHDIAGLVRGA-HE-GQG---------------AF----EDPDIIH-VDD------------SVDPVRD 126 (374)
Q Consensus 82 ~~~~-~~~~~~v~D~~gl~~~~-~~-~~~---------------~~----~~~~il~-l~~------------~~dP~~~ 126 (374)
+|.. +++.+++.++..+.... .. ... .+ .+..+-. +++ +.+| +
T Consensus 86 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p--~ 163 (250)
T 2d2e_A 86 FQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEP--T 163 (250)
T ss_dssp CCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCC--S
T ss_pred ccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCC--C
Confidence 7765 55567777776553210 00 000 11 1222223 444 5689 9
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHH-HHHHHHHHhCCCceeccC
Q 017295 127 LEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHEL-CQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 127 l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~-~d~v~~~L~~G~iv~~~~ 185 (374)
++++|||++++|+.....+++.+.++.+++.+ |++..+..+ ||++ .+|++|+++..++
T Consensus 164 lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v-~~l~~G~i~~~g~ 227 (250)
T 2d2e_A 164 YAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKV-HVMMDGRVVATGG 227 (250)
T ss_dssp EEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEE-EEEETTEEEEEES
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEE-EEEECCEEEEEeC
Confidence 99999999999999999999999887544444 999887777 5999 8899999887654
No 38
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.63 E-value=1.2e-18 Score=160.52 Aligned_cols=155 Identities=15% Similarity=0.218 Sum_probs=112.5
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-------hhccC
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKP 82 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-------~~~~~ 82 (374)
++.+|+++++ |..++|+|+||||||||+++|+|. ++|++|.|.++|.++.... ..|.+
T Consensus 14 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 82 (243)
T 1mv5_A 14 SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERF-----------YQPTAGEITIDGQPIDNISLENWRSQIGFVS 82 (243)
T ss_dssp SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTS-----------SCCSBSCEEETTEESTTTSCSCCTTTCCEEC
T ss_pred CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECCEEhhhCCHHHHHhhEEEEc
Confidence 4578998886 456999999999999999999999 8899999999998764321 24777
Q ss_pred CCC-ccccchHhhHhhhhccccCC------------CCCCCC-----------CceeEecC------------CCCCchh
Q 017295 83 KSA-VPAFLEIHDIAGLVRGAHEG------------QGAFED-----------PDIIHVDD------------SVDPVRD 126 (374)
Q Consensus 83 ~~~-~~~~~~v~D~~gl~~~~~~~------------~~~~~~-----------~~il~l~~------------~~dP~~~ 126 (374)
|.. ++. .++.|++.+....... ...+.+ .....+++ +.+| +
T Consensus 83 q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p--~ 159 (243)
T 1mv5_A 83 QDSAIMA-GTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNP--K 159 (243)
T ss_dssp CSSCCCC-EEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCC--S
T ss_pred CCCcccc-ccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCC--C
Confidence 776 333 5888888764111000 001111 01122333 5688 9
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 127 LEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 127 l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
++++|||++++|+.....+++.+.+.. ++.+ |++..+. .||++ .+|++|+++..++
T Consensus 160 lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~-~~d~v-~~l~~G~i~~~g~ 220 (243)
T 1mv5_A 160 ILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLSTIV-DADKI-YFIEKGQITGSGK 220 (243)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHHHHH-HCSEE-EEEETTEECCCSC
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChHHHH-hCCEE-EEEECCEEEEeCC
Confidence 999999999999999999999988876 5544 9998764 59999 8899999876554
No 39
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.62 E-value=4e-18 Score=159.18 Aligned_cols=162 Identities=17% Similarity=0.115 Sum_probs=113.6
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh--------hhcc
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC--------QLFK 81 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~--------~~~~ 81 (374)
++.+|+++++ |..+||+|+||||||||+|+|+|+.. ..|++|.|.++|.++.... ..|.
T Consensus 32 ~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~---------~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v 102 (267)
T 2zu0_C 32 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRED---------YEVTGGTVEFKGKDLLALSPEDRAGEGIFMA 102 (267)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTT---------CEEEEEEEEETTEEGGGSCHHHHHHHTEEEE
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---------CCCCCeEEEECCEECCcCCHHHHhhCCEEEE
Confidence 4568998876 45699999999999999999999821 2588999999998764321 1366
Q ss_pred CCCC-ccccchHhhHhhhhcc-c---cC--CC-------C--------CC----CCCcee-EecC------------CCC
Q 017295 82 PKSA-VPAFLEIHDIAGLVRG-A---HE--GQ-------G--------AF----EDPDII-HVDD------------SVD 122 (374)
Q Consensus 82 ~~~~-~~~~~~v~D~~gl~~~-~---~~--~~-------~--------~~----~~~~il-~l~~------------~~d 122 (374)
+|.. +++.+++.++..+... . .. .. . .+ .+..+. .+++ +.+
T Consensus 103 ~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~ 182 (267)
T 2zu0_C 103 FQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLE 182 (267)
T ss_dssp CSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHC
T ss_pred ccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhC
Confidence 7765 4555666665543210 0 00 00 0 11 111221 1443 568
Q ss_pred CchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHH-HHHHHHHHhCCCceeccCCC
Q 017295 123 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHEL-CQRVKAWLQDGKDVRLGDWK 187 (374)
Q Consensus 123 P~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~-~d~v~~~L~~G~iv~~~~~~ 187 (374)
| +++++|||++++|+.....+++.+.++.+++.+ |++..+..+ ||++ .+|++|+++..++..
T Consensus 183 p--~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v-~~l~~G~i~~~g~~~ 250 (267)
T 2zu0_C 183 P--ELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYV-HVLYQGRIVKSGDFT 250 (267)
T ss_dssp C--SEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEE-EEEETTEEEEEECTT
T ss_pred C--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEE-EEEECCEEEEEcCHH
Confidence 9 999999999999999999999988876544444 999887776 8999 889999998777654
No 40
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.58 E-value=9e-18 Score=153.29 Aligned_cols=149 Identities=16% Similarity=0.224 Sum_probs=103.5
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCC-ccc
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSA-VPA 88 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~-~~~ 88 (374)
++.+|+++++. ..++|+||||||||||+++|+|. ++|++|.|.++|. ..|.+|.. +++
T Consensus 20 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~------i~~v~q~~~~~~ 82 (229)
T 2pze_A 20 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE-----------LEPSEGKIKHSGR------ISFCSQFSWIMP 82 (229)
T ss_dssp SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS-----------SCCSEEEEEECSC------EEEECSSCCCCS
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CcCCccEEEECCE------EEEEecCCcccC
Confidence 45789998864 46999999999999999999999 8899999999882 24566654 333
Q ss_pred cchHhhHhhhhccccC----------CCC----CCC-------CCceeEecC------------CCCCchhHHHHHHHHH
Q 017295 89 FLEIHDIAGLVRGAHE----------GQG----AFE-------DPDIIHVDD------------SVDPVRDLEVISAELR 135 (374)
Q Consensus 89 ~~~v~D~~gl~~~~~~----------~~~----~~~-------~~~il~l~~------------~~dP~~~l~ilde~l~ 135 (374)
.++.|++.+...... +.. .+. ......+++ +.+| +++++|||++
T Consensus 83 -~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p--~lllLDEPts 159 (229)
T 2pze_A 83 -GTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA--DLYLLDSPFG 159 (229)
T ss_dssp -BCHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCC--SEEEEESTTT
T ss_pred -CCHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCC--CEEEEECccc
Confidence 377777665321000 000 000 000112222 5689 9999999999
Q ss_pred hhcHHHHHHHHHHH-HHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 136 LKDIEFMERRIEDV-EKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 136 ~~D~~~~~~~~~~i-~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
++|+.....+++.+ .... ++.+ |++..+. .||++ .+|++|+++..++
T Consensus 160 ~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~~~-~~d~v-~~l~~G~i~~~g~ 212 (229)
T 2pze_A 160 YLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEHLK-KADKI-LILHEGSSYFYGT 212 (229)
T ss_dssp TSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHHHH-HCSEE-EEEETTEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChHHHH-hCCEE-EEEECCEEEEECC
Confidence 99999988888753 3332 3433 9988765 59999 8899999886654
No 41
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.58 E-value=1.7e-17 Score=154.42 Aligned_cols=154 Identities=14% Similarity=0.109 Sum_probs=112.8
Q ss_pred ccccccccC---CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh----hhh-ccCCCCc
Q 017295 15 RPILGRFSS---HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----CQL-FKPKSAV 86 (374)
Q Consensus 15 ~~vL~~i~~---~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l----~~~-~~~~~~~ 86 (374)
+.+|+++++ |..++|+|+||||||||+++|+|. + |++|.|.++|.++... ... |.+|...
T Consensus 18 ~~il~~vsl~i~Ge~~~i~G~NGsGKSTLlk~l~Gl-----------~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~ 85 (263)
T 2pjz_A 18 RFSLENINLEVNGEKVIILGPNGSGKTTLLRAISGL-----------L-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYE 85 (263)
T ss_dssp EEEEEEEEEEECSSEEEEECCTTSSHHHHHHHHTTS-----------S-CCEEEEEETTEEGGGCSCCTTEEECCGGGSC
T ss_pred ceeEEeeeEEECCEEEEEECCCCCCHHHHHHHHhCC-----------C-CCCcEEEECCEECcchHHhhheEEEeCCCCc
Confidence 568888765 457999999999999999999999 8 9999999999765321 124 7777764
Q ss_pred cccchHhhHhhhhccccCCCC----------CCC----CCceeEecC------------CCCCchhHHHHHHHHHhhcHH
Q 017295 87 PAFLEIHDIAGLVRGAHEGQG----------AFE----DPDIIHVDD------------SVDPVRDLEVISAELRLKDIE 140 (374)
Q Consensus 87 ~~~~~v~D~~gl~~~~~~~~~----------~~~----~~~il~l~~------------~~dP~~~l~ilde~l~~~D~~ 140 (374)
. .+++.|++.+....+.... .+. +..+-.+++ +.+| +++++|||++++|+.
T Consensus 86 l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p--~lllLDEPts~LD~~ 162 (263)
T 2pjz_A 86 I-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQP--EIVGLDEPFENVDAA 162 (263)
T ss_dssp T-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCC--SEEEEECTTTTCCHH
T ss_pred c-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCC--CEEEEECCccccCHH
Confidence 4 6788888776432111000 111 111222332 5789 999999999999999
Q ss_pred HHHHHHHHHHHHHHcc---CccchHHHHHHHH-HHHHHHhCCCceeccC
Q 017295 141 FMERRIEDVEKSMKRS---NDKQLKIEHELCQ-RVKAWLQDGKDVRLGD 185 (374)
Q Consensus 141 ~~~~~~~~i~~~~~~~---~~H~~~~~~~~~d-~v~~~L~~G~iv~~~~ 185 (374)
.....++.+.+..+ . .+|++..+..+|| ++ .+|++|+++..++
T Consensus 163 ~~~~l~~~L~~~~~-tviivtHd~~~~~~~~d~~i-~~l~~G~i~~~g~ 209 (263)
T 2pjz_A 163 RRHVISRYIKEYGK-EGILVTHELDMLNLYKEYKA-YFLVGNRLQGPIS 209 (263)
T ss_dssp HHHHHHHHHHHSCS-EEEEEESCGGGGGGCTTSEE-EEEETTEEEEEEE
T ss_pred HHHHHHHHHHHhcC-cEEEEEcCHHHHHHhcCceE-EEEECCEEEEecC
Confidence 99999988876542 1 1299998888999 99 8899999886654
No 42
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.57 E-value=5.6e-18 Score=155.48 Aligned_cols=150 Identities=16% Similarity=0.190 Sum_probs=105.9
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCcccc
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAF 89 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~ 89 (374)
++.+|+++++. ..++|+||||||||||+++|+|. ++|++|.|.++|. ..|.+|......
T Consensus 17 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~I~~~g~------i~~v~Q~~~~~~ 79 (237)
T 2cbz_A 17 DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAE-----------MDKVEGHVAIKGS------VAYVPQQAWIQN 79 (237)
T ss_dssp SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTC-----------SEEEEEEEEECSC------EEEECSSCCCCS
T ss_pred CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCceEEECCE------EEEEcCCCcCCC
Confidence 35789988764 56999999999999999999999 8899999999983 245666654445
Q ss_pred chHhhHhhhhccccCCCC-------CC--------------CCCceeEecC------------CCCCchhHHHHHHHHHh
Q 017295 90 LEIHDIAGLVRGAHEGQG-------AF--------------EDPDIIHVDD------------SVDPVRDLEVISAELRL 136 (374)
Q Consensus 90 ~~v~D~~gl~~~~~~~~~-------~~--------------~~~~il~l~~------------~~dP~~~l~ilde~l~~ 136 (374)
.++.|++.+......... .+ .+.....+++ +.+| +++++|||+++
T Consensus 80 ~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p--~lllLDEPts~ 157 (237)
T 2cbz_A 80 DSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNA--DIYLFDDPLSA 157 (237)
T ss_dssp EEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCC--SEEEEESTTTT
T ss_pred cCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCC--CEEEEeCcccc
Confidence 688887766432111000 00 0111222332 4688 99999999999
Q ss_pred hcHHHHHHHHHHHH---HHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 137 KDIEFMERRIEDVE---KSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 137 ~D~~~~~~~~~~i~---~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+|+.....+++.+. ... ++.+ |++..+. .||++ .+|++|+++..++
T Consensus 158 LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~~~-~~d~v-~~l~~G~i~~~g~ 211 (237)
T 2cbz_A 158 VDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSYLP-QVDVI-IVMSGGKISEMGS 211 (237)
T ss_dssp SCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTTGG-GSSEE-EEEETTEEEEEEC
T ss_pred cCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHHHH-hCCEE-EEEeCCEEEEeCC
Confidence 99999888888774 222 3433 9887754 68998 8889998876554
No 43
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.57 E-value=1.4e-16 Score=164.26 Aligned_cols=155 Identities=12% Similarity=0.121 Sum_probs=114.6
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-------hhccCC
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPK 83 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-------~~~~~~ 83 (374)
+.+|+++++ |..+||+||||||||||+++|+|. .+|++|.|.++|.++.... ..|.+|
T Consensus 356 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~-----------~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q 424 (582)
T 3b5x_A 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRF-----------YDVDSGSICLDGHDVRDYKLTNLRRHFALVSQ 424 (582)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCCEEEECCEEhhhCCHHHHhcCeEEEcC
Confidence 568998875 556999999999999999999999 8899999999998765322 257788
Q ss_pred CCccccchHhhHhhhhc--cccCCC--C-----CCC--------------CCceeEecC------------CCCCchhHH
Q 017295 84 SAVPAFLEIHDIAGLVR--GAHEGQ--G-----AFE--------------DPDIIHVDD------------SVDPVRDLE 128 (374)
Q Consensus 84 ~~~~~~~~v~D~~gl~~--~~~~~~--~-----~~~--------------~~~il~l~~------------~~dP~~~l~ 128 (374)
+......++.|++.++. ...... . .+. ......+++ ..+| +++
T Consensus 425 ~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p--~il 502 (582)
T 3b5x_A 425 NVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDA--PVL 502 (582)
T ss_pred CCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCC--CEE
Confidence 76333358888887753 111000 0 000 001122333 5789 999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 129 VISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 129 ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
++|||++++|+.......+.+.+.. ++.+ |++..+. .||++ .+|++|+++..++
T Consensus 503 llDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~d~i-~~l~~G~i~~~g~ 561 (582)
T 3b5x_A 503 ILDEATSALDTESERAIQAALDELQ-KNKTVLVIAHRLSTIE-QADEI-LVVDEGEIIERGR 561 (582)
T ss_pred EEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHH-hCCEE-EEEECCEEEEECC
Confidence 9999999999999999988888765 3554 9998765 69999 9999999987664
No 44
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.57 E-value=1.1e-17 Score=155.46 Aligned_cols=154 Identities=15% Similarity=0.124 Sum_probs=109.5
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-------hhccCC
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPK 83 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-------~~~~~~ 83 (374)
+.+|+++++ |..+||+||||||||||+++|+|. ++| +|.|.++|.++.... ..|.+|
T Consensus 33 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q 100 (260)
T 2ghi_A 33 HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRF-----------YDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQ 100 (260)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS-----------SCC-EEEEEETTEEGGGBCHHHHHTTEEEECS
T ss_pred CceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcc-----------CCC-CeEEEECCEEhhhcCHHHHhccEEEEcC
Confidence 468998876 456999999999999999999999 667 899999998764321 247787
Q ss_pred CCccccchHhhHhhhhccccCCCC--------C-------CC-------CCceeEecC------------CCCCchhHHH
Q 017295 84 SAVPAFLEIHDIAGLVRGAHEGQG--------A-------FE-------DPDIIHVDD------------SVDPVRDLEV 129 (374)
Q Consensus 84 ~~~~~~~~v~D~~gl~~~~~~~~~--------~-------~~-------~~~il~l~~------------~~dP~~~l~i 129 (374)
.......++.|++.+......... . +. ......+++ +.+| ++++
T Consensus 101 ~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p--~lll 178 (260)
T 2ghi_A 101 DTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP--KIVI 178 (260)
T ss_dssp SCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC--SEEE
T ss_pred CCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC--CEEE
Confidence 762223588888766421000000 0 00 011122333 5689 9999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 130 ISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 130 lde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+|||++++|+.....+++.+.++. ++.+ |++..+. .||++ .+|++|+++..++
T Consensus 179 LDEPts~LD~~~~~~i~~~l~~l~-~~~tviivtH~~~~~~-~~d~i-~~l~~G~i~~~g~ 236 (260)
T 2ghi_A 179 FDEATSSLDSKTEYLFQKAVEDLR-KNRTLIIIAHRLSTIS-SAESI-ILLNKGKIVEKGT 236 (260)
T ss_dssp EECCCCTTCHHHHHHHHHHHHHHT-TTSEEEEECSSGGGST-TCSEE-EEEETTEEEEEEC
T ss_pred EECccccCCHHHHHHHHHHHHHhc-CCCEEEEEcCCHHHHH-hCCEE-EEEECCEEEEECC
Confidence 999999999999999999888775 3444 9888764 49999 8899999886654
No 45
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.57 E-value=1.3e-17 Score=163.37 Aligned_cols=156 Identities=12% Similarity=0.135 Sum_probs=109.7
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-------hhccC
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKP 82 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-------~~~~~ 82 (374)
++.+|+++++ |..++|+||||||||||+++|+|+ .. ++|.|.++|.++..+. ..|.+
T Consensus 33 ~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl-----------~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~ 100 (390)
T 3gd7_A 33 GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRL-----------LN-TEGEIQIDGVSWDSITLEQWRKAFGVIP 100 (390)
T ss_dssp SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTC-----------SE-EEEEEEESSCBTTSSCHHHHHHTEEEES
T ss_pred CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCC-----------CC-CCeEEEECCEECCcCChHHHhCCEEEEc
Confidence 4678998876 456999999999999999999999 65 8999999998875422 14778
Q ss_pred CCCccccchHhhHhhhhccccC----------CCCCCCCCceeE-----------ecC------------CCCCchhHHH
Q 017295 83 KSAVPAFLEIHDIAGLVRGAHE----------GQGAFEDPDIIH-----------VDD------------SVDPVRDLEV 129 (374)
Q Consensus 83 ~~~~~~~~~v~D~~gl~~~~~~----------~~~~~~~~~il~-----------l~~------------~~dP~~~l~i 129 (374)
|......+++.+++.+...... +...+.+...-. +++ +.+| ++++
T Consensus 101 Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P--~lLL 178 (390)
T 3gd7_A 101 QKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKA--KILL 178 (390)
T ss_dssp CCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTC--CEEE
T ss_pred CCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCC--CEEE
Confidence 8763333688888764221100 000000010001 333 5689 9999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 130 ISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 130 lde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
+|||++++|+.....++..+.+.. .+.+ |+++. ...||++ .+|++|+++..+++
T Consensus 179 LDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e~-~~~aDri-~vl~~G~i~~~g~~ 237 (390)
T 3gd7_A 179 LDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIEA-MLECDQF-LVIEENKVRQYDSI 237 (390)
T ss_dssp EESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSGG-GTTCSEE-EEEETTEEEEESSH
T ss_pred EeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHHH-HHhCCEE-EEEECCEEEEECCH
Confidence 999999999999888888887643 3443 88754 4569999 99999999877653
No 46
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.56 E-value=1.3e-16 Score=165.11 Aligned_cols=157 Identities=13% Similarity=0.181 Sum_probs=116.3
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-------hhccC
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKP 82 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-------~~~~~ 82 (374)
++++|+++++ |..+||+||||||||||+++|+|. .+|++|.|.++|.++..+. ..|.+
T Consensus 367 ~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~-----------~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~ 435 (598)
T 3qf4_B 367 KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRF-----------YDVDRGQILVDGIDIRKIKRSSLRSSIGIVL 435 (598)
T ss_dssp SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTS-----------SCCSEEEEEETTEEGGGSCHHHHHHHEEEEC
T ss_pred CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-----------cCCCCeEEEECCEEhhhCCHHHHHhceEEEe
Confidence 3568888775 566999999999999999999999 8999999999998875432 25788
Q ss_pred CCCccccchHhhHhhhhccccCCCC---CCCCC-----------ce--------eEecC------------CCCCchhHH
Q 017295 83 KSAVPAFLEIHDIAGLVRGAHEGQG---AFEDP-----------DI--------IHVDD------------SVDPVRDLE 128 (374)
Q Consensus 83 ~~~~~~~~~v~D~~gl~~~~~~~~~---~~~~~-----------~i--------l~l~~------------~~dP~~~l~ 128 (374)
|+......++.|+..++........ +.... .. ..+++ ..+| +++
T Consensus 436 Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p--~il 513 (598)
T 3qf4_B 436 QDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANP--KIL 513 (598)
T ss_dssp TTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCC--SEE
T ss_pred CCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCC--CEE
Confidence 8874334689999877532111110 00000 00 01222 4688 999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 129 VISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 129 ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
++|||++++|........+.+.+.. ++.+ |++..+.. ||++ .+|++|+++..|+.
T Consensus 514 llDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~-~d~i-~~l~~G~i~~~g~~ 573 (598)
T 3qf4_B 514 ILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNTIKN-ADLI-IVLRDGEIVEMGKH 573 (598)
T ss_dssp EECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTHHHH-CSEE-EEECSSSEEECSCH
T ss_pred EEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHc-CCEE-EEEECCEEEEECCH
Confidence 9999999999999999988888765 4554 99988755 9999 99999999987753
No 47
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.55 E-value=5.4e-17 Score=167.52 Aligned_cols=157 Identities=17% Similarity=0.237 Sum_probs=116.2
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-------hhccC
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKP 82 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-------~~~~~ 82 (374)
.+++|+++++ |..+||+||||||||||+++|+|. ++|++|.|.++|.++..+. ..|.|
T Consensus 355 ~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~-----------~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~ 423 (587)
T 3qf4_A 355 TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRL-----------IDPERGRVEVDELDVRTVKLKDLRGHISAVP 423 (587)
T ss_dssp SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTS-----------SCCSEEEEEESSSBGGGBCHHHHHHHEEEEC
T ss_pred CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------ccCCCcEEEECCEEcccCCHHHHHhheEEEC
Confidence 4568998875 566999999999999999999999 8899999999999876532 15788
Q ss_pred CCCccccchHhhHhhhhccccCCCC---------------CCC-------CCceeEecC------------CCCCchhHH
Q 017295 83 KSAVPAFLEIHDIAGLVRGAHEGQG---------------AFE-------DPDIIHVDD------------SVDPVRDLE 128 (374)
Q Consensus 83 ~~~~~~~~~v~D~~gl~~~~~~~~~---------------~~~-------~~~il~l~~------------~~dP~~~l~ 128 (374)
|+......++.|++.+......... .+. ......+++ ..+| +++
T Consensus 424 Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p--~il 501 (587)
T 3qf4_A 424 QETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKP--KVL 501 (587)
T ss_dssp SSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCC--SEE
T ss_pred CCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCC--CEE
Confidence 8873334588998876532111000 000 001111222 4688 999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 129 VISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 129 ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
++|||++++|+.......+.+.+.. ++.+ |++..+. .||++ .+|++|+++..|+.
T Consensus 502 llDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~-~~d~i-~vl~~G~i~~~g~~ 561 (587)
T 3qf4_A 502 ILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIPTAL-LADKI-LVLHEGKVAGFGTH 561 (587)
T ss_dssp EEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHHHHT-TSSEE-EEEETTEEEEEECH
T ss_pred EEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChHHHH-hCCEE-EEEECCEEEEECCH
Confidence 9999999999999999888887754 4554 9998764 79999 99999999987754
No 48
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.55 E-value=1.9e-16 Score=163.74 Aligned_cols=157 Identities=18% Similarity=0.195 Sum_probs=115.8
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-------hhccCC
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPK 83 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-------~~~~~~ 83 (374)
+.+|+++++ |..+||+||||||||||+++|+|. .+|++|.|.++|.++.... ..|.+|
T Consensus 357 ~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~-----------~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q 425 (595)
T 2yl4_A 357 VPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRL-----------YDPASGTISLDGHDIRQLNPVWLRSKIGTVSQ 425 (595)
T ss_dssp SEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTS-----------SCCSEEEEEETTEETTTBCHHHHHHSEEEECS
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------cCCCCcEEEECCEEhhhCCHHHHHhceEEEcc
Confidence 358988875 556999999999999999999999 8899999999998775422 257788
Q ss_pred CCccccchHhhHhhhhccccCCCC-----------C-------CC---CCc----eeEecC------------CCCCchh
Q 017295 84 SAVPAFLEIHDIAGLVRGAHEGQG-----------A-------FE---DPD----IIHVDD------------SVDPVRD 126 (374)
Q Consensus 84 ~~~~~~~~v~D~~gl~~~~~~~~~-----------~-------~~---~~~----il~l~~------------~~dP~~~ 126 (374)
+......++.|+..++.....+.. . +. +.. ...+++ ..+| +
T Consensus 426 ~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p--~ 503 (595)
T 2yl4_A 426 EPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNP--K 503 (595)
T ss_dssp SCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCC--S
T ss_pred CCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCC--C
Confidence 763233589998877542210000 0 00 000 122333 4689 9
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCCC
Q 017295 127 LEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDWK 187 (374)
Q Consensus 127 l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~~ 187 (374)
++++|||++++|........+.+.+..+ +.+ |++..+. .||++ .+|++|+++..++.+
T Consensus 504 illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~-~~d~i-~~l~~G~i~~~g~~~ 566 (595)
T 2yl4_A 504 ILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLSTIK-NANMV-AVLDQGKITEYGKHE 566 (595)
T ss_dssp EEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHHHHH-HSSEE-EEEETTEEEEEECSC
T ss_pred EEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHH-cCCEE-EEEECCEEEEECCHH
Confidence 9999999999999999999998887764 444 9998765 59999 899999998777654
No 49
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.54 E-value=4.6e-17 Score=167.77 Aligned_cols=157 Identities=15% Similarity=0.195 Sum_probs=114.1
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-------hhccC
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKP 82 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-------~~~~~ 82 (374)
++++|+++++ |..+||+||||||||||+++|+|. .+|++|.|.++|.++.... ..|.+
T Consensus 353 ~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~-----------~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 421 (578)
T 4a82_A 353 EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRF-----------YDVTSGQILIDGHNIKDFLTGSLRNQIGLVQ 421 (578)
T ss_dssp SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTS-----------SCCSEEEEEETTEEGGGSCHHHHHHTEEEEC
T ss_pred CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcC-----------CCCCCcEEEECCEEhhhCCHHHHhhheEEEe
Confidence 3568998875 566999999999999999999999 8899999999998875432 25788
Q ss_pred CCCccccchHhhHhhhhccccCCCC---------------CCCC-------CceeEecC------------CCCCchhHH
Q 017295 83 KSAVPAFLEIHDIAGLVRGAHEGQG---------------AFED-------PDIIHVDD------------SVDPVRDLE 128 (374)
Q Consensus 83 ~~~~~~~~~v~D~~gl~~~~~~~~~---------------~~~~-------~~il~l~~------------~~dP~~~l~ 128 (374)
|+......++.|+..++........ .+.. .....+++ ..+| +++
T Consensus 422 Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p--~il 499 (578)
T 4a82_A 422 QDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNP--PIL 499 (578)
T ss_dssp SSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCC--SEE
T ss_pred CCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCC--CEE
Confidence 8863334488898877532110000 0000 00011222 4588 999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 129 VISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 129 ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
++|||++++|+.......+.+.+.. ++.+ |++..+. .||++ .+|++|+++..|+.
T Consensus 500 llDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~-~~d~i-~~l~~G~i~~~g~~ 559 (578)
T 4a82_A 500 ILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLSTIT-HADKI-VVIENGHIVETGTH 559 (578)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGGTT-TCSEE-EEEETTEEEEEECH
T ss_pred EEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHH-cCCEE-EEEECCEEEEECCH
Confidence 9999999999998888888887664 4444 9998765 49999 99999999987754
No 50
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.52 E-value=6.1e-15 Score=142.23 Aligned_cols=65 Identities=35% Similarity=0.661 Sum_probs=55.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhccccC
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~~~~~ 104 (374)
..|+|||.+|||||||+|+|++..+.+++|||||+.|+.|.+.+++. ..+.+.|++|+..+++.
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~----------------~~~~l~DtPG~i~~a~~ 222 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG----------------RSFVMADLPGLIEGAHQ 222 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS----------------CEEEEEEHHHHHHHTTC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC----------------ceEEEecCCCCcccccc
Confidence 45999999999999999999999888899999999999999988752 12788999999876554
Q ss_pred C
Q 017295 105 G 105 (374)
Q Consensus 105 ~ 105 (374)
+
T Consensus 223 ~ 223 (342)
T 1lnz_A 223 G 223 (342)
T ss_dssp T
T ss_pred c
Confidence 3
No 51
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.52 E-value=1.2e-16 Score=164.70 Aligned_cols=155 Identities=12% Similarity=0.132 Sum_probs=114.0
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-------hhccCC
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPK 83 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-------~~~~~~ 83 (374)
+.+|+++++ |..+||+||||||||||+++|+|. .+|++|.|.++|.++.... ..|.+|
T Consensus 356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~-----------~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q 424 (582)
T 3b60_A 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF-----------YDIDEGHILMDGHDLREYTLASLRNQVALVSQ 424 (582)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTT-----------TCCSEEEEEETTEETTTBCHHHHHHTEEEECS
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhc-----------cCCCCCeEEECCEEccccCHHHHHhhCeEEcc
Confidence 578998875 556999999999999999999999 8899999999998765422 257888
Q ss_pred CCccccchHhhHhhhhc-cccCCCC--------CC--------------CCCceeEecC------------CCCCchhHH
Q 017295 84 SAVPAFLEIHDIAGLVR-GAHEGQG--------AF--------------EDPDIIHVDD------------SVDPVRDLE 128 (374)
Q Consensus 84 ~~~~~~~~v~D~~gl~~-~~~~~~~--------~~--------------~~~~il~l~~------------~~dP~~~l~ 128 (374)
+......++.|++.++. ....... .+ .......+++ ..+| +++
T Consensus 425 ~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p--~il 502 (582)
T 3b60_A 425 NVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDS--PIL 502 (582)
T ss_dssp SCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCC--SEE
T ss_pred CCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCC--CEE
Confidence 86333358999887753 1100000 00 0001112222 4688 999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 129 VISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 129 ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
++|||++++|+.......+.+.+.. ++.+ |++..+. .||++ .+|++|+++..++
T Consensus 503 llDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~d~i-~~l~~G~i~~~g~ 561 (582)
T 3b60_A 503 ILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLSTIE-QADEI-VVVEDGIIVERGT 561 (582)
T ss_dssp EEETTTSSCCHHHHHHHHHHHHHHH-TTSEEEEECSCGGGTT-TCSEE-EEEETTEEEEEEC
T ss_pred EEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEeccHHHHH-hCCEE-EEEECCEEEEecC
Confidence 9999999999999999998888775 3554 9987764 69999 8999999987664
No 52
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.48 E-value=2.6e-16 Score=148.41 Aligned_cols=147 Identities=16% Similarity=0.213 Sum_probs=100.6
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCC-cccc
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSA-VPAF 89 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~-~~~~ 89 (374)
+.+|+++++ |..++|+|+||||||||+++|+|. ++|++|.|.++|. ..|.+|.. ++.
T Consensus 51 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl-----------~~p~~G~I~~~g~------i~~v~Q~~~l~~- 112 (290)
T 2bbs_A 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE-----------LEPSEGKIKHSGR------ISFCSQNSWIMP- 112 (290)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTS-----------SCEEEEEEECCSC------EEEECSSCCCCS-
T ss_pred ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-----------CCCCCcEEEECCE------EEEEeCCCccCc-
Confidence 467888875 456999999999999999999999 8899999999882 24566654 333
Q ss_pred chHhhHhhhhcccc----------CCCC----CCC-------CCceeEecC------------CCCCchhHHHHHHHHHh
Q 017295 90 LEIHDIAGLVRGAH----------EGQG----AFE-------DPDIIHVDD------------SVDPVRDLEVISAELRL 136 (374)
Q Consensus 90 ~~v~D~~gl~~~~~----------~~~~----~~~-------~~~il~l~~------------~~dP~~~l~ilde~l~~ 136 (374)
.++.|++. ..... .+.. .+. ......+++ +.+| +++++|||+++
T Consensus 113 ~tv~enl~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p--~lllLDEPts~ 189 (290)
T 2bbs_A 113 GTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA--DLYLLDSPFGY 189 (290)
T ss_dssp SBHHHHHH-TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCC--SEEEEESTTTT
T ss_pred ccHHHHhh-CcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCC--CEEEEECCccc
Confidence 36766654 21000 0000 000 001122333 5689 99999999999
Q ss_pred hcHHHHHHHHHHH-HHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccC
Q 017295 137 KDIEFMERRIEDV-EKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGD 185 (374)
Q Consensus 137 ~D~~~~~~~~~~i-~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~ 185 (374)
+|+.....+++.+ .+.. ++.+ |++..+. .||++ .+|++|+++..++
T Consensus 190 LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~~~~-~~d~i-~~l~~G~i~~~g~ 241 (290)
T 2bbs_A 190 LDVLTEKEIFESCVCKLM-ANKTRILVTSKMEHLK-KADKI-LILHEGSSYFYGT 241 (290)
T ss_dssp CCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHHHH-HSSEE-EEEETTEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhh-CCCEEEEEecCHHHHH-cCCEE-EEEECCeEEEeCC
Confidence 9999988887753 3332 3433 9988764 59999 8899999886654
No 53
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.45 E-value=9.5e-14 Score=135.03 Aligned_cols=50 Identities=36% Similarity=0.630 Sum_probs=34.4
Q ss_pred CCce-EEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcc
Q 017295 23 SHLK-IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72 (374)
Q Consensus 23 ~~~~-vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~ 72 (374)
.+.. |+|+|+||||||||+|+|+|....++++||+|++|+.|.+.++|.+
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~ 227 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRK 227 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEE
Confidence 3455 9999999999999999999998877999999999999999998854
No 54
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.45 E-value=5e-15 Score=150.95 Aligned_cols=139 Identities=15% Similarity=0.187 Sum_probs=100.0
Q ss_pred ccCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCC-ccccchHhhHhhhh
Q 017295 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSA-VPAFLEIHDIAGLV 99 (374)
Q Consensus 21 i~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~-~~~~~~v~D~~gl~ 99 (374)
+..|..+||+|+||||||||+++|+|+ ++|++|.|.+.+..+.. .+|.. .....++.+++...
T Consensus 291 i~~Gei~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~~~~i~~-----~~q~~~~~~~~tv~~~l~~~ 354 (538)
T 3ozx_A 291 AKEGEIIGILGPNGIGKTTFARILVGE-----------ITADEGSVTPEKQILSY-----KPQRIFPNYDGTVQQYLENA 354 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTS-----------SCCSBCCEESSCCCEEE-----ECSSCCCCCSSBHHHHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCeeeEe-----echhcccccCCCHHHHHHHh
Confidence 356788999999999999999999999 88999999988776543 34433 12235666655443
Q ss_pred ccccC-CCC-------------CCCCCceeEecC------------CCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q 017295 100 RGAHE-GQG-------------AFEDPDIIHVDD------------SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSM 153 (374)
Q Consensus 100 ~~~~~-~~~-------------~~~~~~il~l~~------------~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~ 153 (374)
..... ... .+.+..+-.+++ +.+| +++++|||++++|+.....+++.+.++.
T Consensus 355 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p--~lLlLDEPT~gLD~~~~~~i~~~l~~l~ 432 (538)
T 3ozx_A 355 SKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEA--DLYVLDQPSSYLDVEERYIVAKAIKRVT 432 (538)
T ss_dssp CSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCC--SEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred hhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCC--CEEEEeCCccCCCHHHHHHHHHHHHHHH
Confidence 21110 000 112223333343 5789 9999999999999999999999998887
Q ss_pred Hc-cCc-----cchHHHHHHHHHHHHHHhCC
Q 017295 154 KR-SND-----KQLKIEHELCQRVKAWLQDG 178 (374)
Q Consensus 154 ~~-~~~-----H~~~~~~~~~d~v~~~L~~G 178 (374)
++ +.+ |++.++..+||+| .+|+.+
T Consensus 433 ~~~g~tvi~vsHdl~~~~~~aDri-~vl~~~ 462 (538)
T 3ozx_A 433 RERKAVTFIIDHDLSIHDYIADRI-IVFKGE 462 (538)
T ss_dssp HHTTCEEEEECSCHHHHHHHCSEE-EEEEEE
T ss_pred HhCCCEEEEEeCCHHHHHHhCCEE-EEEeCC
Confidence 54 444 9999999999999 778653
No 55
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.44 E-value=3.2e-14 Score=131.87 Aligned_cols=57 Identities=33% Similarity=0.540 Sum_probs=51.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhh
Q 017295 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~ 99 (374)
+|+|+|.+|||||||||.|+|....++++|++|.+...|.+.+++.. +.++|+||..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~-----------------~~lvDtpG~~ 59 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHL-----------------IEITDLPGVY 59 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEE-----------------EEEEECCCCS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeE-----------------EEEEeCCCcc
Confidence 68999999999999999999998888999999999999999988754 7889999885
No 56
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.41 E-value=4.7e-15 Score=165.16 Aligned_cols=156 Identities=15% Similarity=0.155 Sum_probs=113.5
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-------hhccCC
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPK 83 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-------~~~~~~ 83 (374)
.++|+++++ |..+||||+||||||||+++|+|. .+|++|.|.++|.++..+. ..|.+|
T Consensus 403 ~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~-----------~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q 471 (1284)
T 3g5u_A 403 VQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRL-----------YDPLDGMVSIDGQDIRTINVRYLREIIGVVSQ 471 (1284)
T ss_dssp CCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTS-----------SCCSEEEEEETTEEGGGSCHHHHHHHEEEECS
T ss_pred CcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeEEEECCEEHHhCCHHHHHhheEEEcC
Confidence 468998875 566999999999999999999999 8999999999998875433 257888
Q ss_pred CCccccchHhhHhhhhccccCCCC---------------CCC-------CCceeEecC------------CCCCchhHHH
Q 017295 84 SAVPAFLEIHDIAGLVRGAHEGQG---------------AFE-------DPDIIHVDD------------SVDPVRDLEV 129 (374)
Q Consensus 84 ~~~~~~~~v~D~~gl~~~~~~~~~---------------~~~-------~~~il~l~~------------~~dP~~~l~i 129 (374)
+......++.|++.++........ .+. ......+++ ..+| ++++
T Consensus 472 ~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p--~ili 549 (1284)
T 3g5u_A 472 EPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNP--KILL 549 (1284)
T ss_dssp SCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCC--SEEE
T ss_pred CCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCC--CEEE
Confidence 874334588888876532110000 000 001111222 3578 9999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 130 ISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 130 lde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
+|||++.+|......+.+.+.... ++.| |++..+.. ||+| .+|++|+++..|+.
T Consensus 550 LDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~i~~-~d~i-~vl~~G~i~~~g~~ 608 (1284)
T 3g5u_A 550 LDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLSTVRN-ADVI-AGFDGGVIVEQGNH 608 (1284)
T ss_dssp EESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHHHHTT-CSEE-EECSSSCCCCEECH
T ss_pred EECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHc-CCEE-EEEECCEEEEECCH
Confidence 999999999998777777776544 4555 99998765 9999 99999999877654
No 57
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.41 E-value=7.9e-14 Score=130.40 Aligned_cols=59 Identities=36% Similarity=0.571 Sum_probs=51.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhc
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~ 100 (374)
.+|+|+|.+|||||||||.|+|....++++|++|.++..|.+.+.+.+ +.++|+||...
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~-----------------~~liDtpG~~~ 62 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQ-----------------VTLVDLPGTYS 62 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCE-----------------EEEEECCCCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCc-----------------eEEEECcCCCc
Confidence 579999999999999999999998778999999999999999887643 67889998753
No 58
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.41 E-value=6.6e-15 Score=150.23 Aligned_cols=146 Identities=16% Similarity=0.186 Sum_probs=101.5
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCC-ccccchHhhHhhhh-
Q 017295 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSA-VPAFLEIHDIAGLV- 99 (374)
Q Consensus 22 ~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~-~~~~~~v~D~~gl~- 99 (374)
..|..+||+|+||||||||+++|+|. .+|++|.|.+. .. ..|.+|.. .+..+++.+++...
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl-----------~~p~~G~i~~~-~~-----i~~v~Q~~~~~~~~tv~~~~~~~~ 372 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKMLAGV-----------EEPTEGKIEWD-LT-----VAYKPQYIKADYEGTVYELLSKID 372 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTS-----------SCCSBCCCCCC-CC-----EEEECSSCCCCCSSBHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeEEEEC-ce-----EEEEecCCcCCCCCcHHHHHHhhh
Confidence 35778999999999999999999999 78999998762 22 23555554 23345565554332
Q ss_pred c-cccC------CCC-----CCCCCceeEecC------------CCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHH-
Q 017295 100 R-GAHE------GQG-----AFEDPDIIHVDD------------SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMK- 154 (374)
Q Consensus 100 ~-~~~~------~~~-----~~~~~~il~l~~------------~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~- 154 (374)
. .... -.. .+.+..+-.+++ +.+| +++++|||++++|+.....+++.+.++.+
T Consensus 373 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p--~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~ 450 (538)
T 1yqt_A 373 ASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDA--DIYLLDEPSAYLDVEQRLAVSRAIRHLMEK 450 (538)
T ss_dssp HHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCC--SEEEEECTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCC--CEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 0 0000 000 111222333443 6789 99999999999999999999999988763
Q ss_pred ccCc-----cchHHHHHHHHHHHHHHhC--CCceeccCCC
Q 017295 155 RSND-----KQLKIEHELCQRVKAWLQD--GKDVRLGDWK 187 (374)
Q Consensus 155 ~~~~-----H~~~~~~~~~d~v~~~L~~--G~iv~~~~~~ 187 (374)
.+.+ |++.++..+||++ .+|++ |+++..+++.
T Consensus 451 ~g~tvi~vsHd~~~~~~~~drv-~vl~~~~~~~~~~g~~~ 489 (538)
T 1yqt_A 451 NEKTALVVEHDVLMIDYVSDRL-MVFEGEPGKYGRALPPM 489 (538)
T ss_dssp HTCEEEEECSCHHHHHHHCSEE-EEEEEETTTEEEECCCE
T ss_pred CCCEEEEEeCCHHHHHHhCCEE-EEEeCCcceEeecCCHH
Confidence 3554 9999999999999 78875 5655555543
No 59
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.40 E-value=7e-15 Score=151.85 Aligned_cols=146 Identities=17% Similarity=0.209 Sum_probs=102.3
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCC-ccccchHhhHhhhh-
Q 017295 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSA-VPAFLEIHDIAGLV- 99 (374)
Q Consensus 22 ~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~-~~~~~~v~D~~gl~- 99 (374)
..|..+||+|+||||||||+++|+|. +.|++|.|.+. .. ..|.+|.. .+..+++.+++...
T Consensus 380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl-----------~~p~~G~I~~~-~~-----i~~v~Q~~~~~~~~tv~e~~~~~~ 442 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFVKMLAGV-----------EEPTEGKVEWD-LT-----VAYKPQYIKAEYEGTVYELLSKID 442 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTS-----------SCCSBSCCCCC-CC-----EEEECSSCCCCCSSBHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEEe-eE-----EEEEecCccCCCCCcHHHHHHhhh
Confidence 45778999999999999999999999 88999999762 22 24556654 33445666655432
Q ss_pred c-cccC-----------CCCCCCCCceeEecC------------CCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHH-
Q 017295 100 R-GAHE-----------GQGAFEDPDIIHVDD------------SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMK- 154 (374)
Q Consensus 100 ~-~~~~-----------~~~~~~~~~il~l~~------------~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~- 154 (374)
. .... +...+.+..+-.+++ +.+| +++++|||++++|+.....+++.+.++.+
T Consensus 443 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p--~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~ 520 (607)
T 3bk7_A 443 SSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDA--DIYLLDEPSAYLDVEQRLAVSRAIRHLMEK 520 (607)
T ss_dssp HHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCC--SEEEEECTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCC--CEEEEeCCccCCCHHHHHHHHHHHHHHHHh
Confidence 0 0000 000122233334444 6789 99999999999999999999999988764
Q ss_pred ccCc-----cchHHHHHHHHHHHHHHhC--CCceeccCCC
Q 017295 155 RSND-----KQLKIEHELCQRVKAWLQD--GKDVRLGDWK 187 (374)
Q Consensus 155 ~~~~-----H~~~~~~~~~d~v~~~L~~--G~iv~~~~~~ 187 (374)
.+.+ |++..+..+||++ .+|++ |.+...+++.
T Consensus 521 ~g~tvi~vsHd~~~~~~~adrv-~vl~~~~g~~~~~g~p~ 559 (607)
T 3bk7_A 521 NEKTALVVEHDVLMIDYVSDRL-IVFEGEPGRHGRALPPM 559 (607)
T ss_dssp TTCEEEEECSCHHHHHHHCSEE-EEEEEETTTEEEECCCE
T ss_pred CCCEEEEEeCCHHHHHHhCCEE-EEEcCCcceEEecCCHH
Confidence 3544 9999999999999 78875 5555555543
No 60
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.40 E-value=2e-13 Score=136.07 Aligned_cols=59 Identities=39% Similarity=0.541 Sum_probs=45.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhh
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~~~-~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~ 99 (374)
..+++|||+||||||||+|+|+|.... ++++|+||.++..|.+.++|.. +.++|++|+.
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~-----------------~~l~Dt~G~~ 239 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK-----------------YVFVDTAGLR 239 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE-----------------EEESSCSCC-
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE-----------------EEEEECCCCc
Confidence 367999999999999999999998764 5999999999999999998865 5677888763
No 61
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.40 E-value=1.2e-13 Score=129.09 Aligned_cols=57 Identities=35% Similarity=0.589 Sum_probs=48.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhh
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~ 99 (374)
.+|+|+|.||||||||||.|+|....+++||++|.++..|.+.. +.. +.++|++|..
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~-----------------l~l~DtpG~~ 60 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKD-----------------LEIQDLPGIY 60 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTT-----------------EEEEECCCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCe-----------------EEEEECCCcC
Confidence 57999999999999999999999888899999999998887644 322 6788888864
No 62
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.40 E-value=9.7e-13 Score=112.75 Aligned_cols=58 Identities=36% Similarity=0.623 Sum_probs=45.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhh
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~ 99 (374)
.+|+|+|+||||||||+|.|+|....++++|++|.++..+.+.+++.. +.++|++|..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~-----------------l~i~Dt~G~~ 61 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEK-----------------FKVVDLPGVY 61 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEE-----------------EEEEECCCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcE-----------------EEEEECCCcc
Confidence 469999999999999999999987777899999999999998877643 6788888764
No 63
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.39 E-value=5.8e-15 Score=164.46 Aligned_cols=156 Identities=16% Similarity=0.187 Sum_probs=113.9
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhh-------hhccCC
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPK 83 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~-------~~~~~~ 83 (374)
.++|+++++ |..+||+|+||||||||+++|+|. .+|++|.|.++|.++..+. ..|.||
T Consensus 1046 ~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~-----------~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q 1114 (1284)
T 3g5u_A 1046 IPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERF-----------YDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQ 1114 (1284)
T ss_dssp CCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTS-----------SCCSEEEEESSSSCTTSSCHHHHTTSCEEEES
T ss_pred CeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------cCCCCCEEEECCEEcccCCHHHHHhceEEECC
Confidence 368999875 566999999999999999999999 8899999999998875432 157788
Q ss_pred CCccccchHhhHhhhhccccCCCC-----------------CCCC-------CceeEecC------------CCCCchhH
Q 017295 84 SAVPAFLEIHDIAGLVRGAHEGQG-----------------AFED-------PDIIHVDD------------SVDPVRDL 127 (374)
Q Consensus 84 ~~~~~~~~v~D~~gl~~~~~~~~~-----------------~~~~-------~~il~l~~------------~~dP~~~l 127 (374)
+......++.|++.+......... .+.+ ..-..+++ ..+| ++
T Consensus 1115 ~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p--~i 1192 (1284)
T 3g5u_A 1115 EPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQP--HI 1192 (1284)
T ss_dssp SCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCC--SS
T ss_pred CCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCC--CE
Confidence 874445688888866432110000 0000 00011222 4578 99
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 128 EVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 128 ~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
+++|||++++|......+.+.+.+.. ++.+ |++..+.. ||+| .+|++|+++..|+.
T Consensus 1193 LiLDEpTs~lD~~~~~~i~~~l~~~~-~~~tvi~isH~l~~i~~-~dri-~vl~~G~i~~~g~~ 1253 (1284)
T 3g5u_A 1193 LLLDEATSALDTESEKVVQEALDKAR-EGRTCIVIAHRLSTIQN-ADLI-VVIQNGKVKEHGTH 1253 (1284)
T ss_dssp EEEESCSSSCCHHHHHHHHHHHHHHS-SSSCEEEECSCTTGGGS-CSEE-EEEETBEEEEEECH
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecCHHHHHc-CCEE-EEEECCEEEEECCH
Confidence 99999999999999888888886643 4554 99988744 9999 99999999987653
No 64
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.38 E-value=1.7e-13 Score=137.81 Aligned_cols=60 Identities=35% Similarity=0.395 Sum_probs=53.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhh
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~~~-~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~ 99 (374)
.+.+|+|+|+||||||||+|.|++... .++++||||.++..+.+.++|.+ +.++|++|+.
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~-----------------~~l~DTaG~~ 302 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGIL-----------------FRIVDTAGVR 302 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEE-----------------EEEEESSCCC
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeE-----------------EEEEECCCcc
Confidence 457899999999999999999999875 46999999999999999998754 7889999985
No 65
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.37 E-value=2.9e-13 Score=125.50 Aligned_cols=58 Identities=33% Similarity=0.532 Sum_probs=51.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhh
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~ 99 (374)
.+|+|+|.+|||||||||.|+|....++++|++|.+...|.+...+.. +.++|+||..
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~-----------------~~l~DtpG~~ 63 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYT-----------------INLIDLPGTY 63 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEE-----------------EEEEECCCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeE-----------------EEEEECCCcC
Confidence 579999999999999999999988778999999999988888876543 7888998874
No 66
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.37 E-value=4.3e-14 Score=145.81 Aligned_cols=144 Identities=15% Similarity=0.168 Sum_probs=94.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCC-ccccchHhhHhhhhc-cc
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSA-VPAFLEIHDIAGLVR-GA 102 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~-~~~~~~v~D~~gl~~-~~ 102 (374)
..+||+|+||||||||+++|+|+ +.|++|.. +... ...|.+|.. .....++.++..... ..
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl-----------~~p~~G~~-~~~~-----~i~~~~q~~~~~~~~tv~e~~~~~~~~~ 441 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGA-----------LKPDEGQD-IPKL-----NVSMKPQKIAPKFPGTVRQLFFKKIRGQ 441 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTS-----------SCCSBCCC-CCSC-----CEEEECSSCCCCCCSBHHHHHHHHCSST
T ss_pred eEEEEECCCCCcHHHHHHHHhcC-----------CCCCCCcC-ccCC-----cEEEecccccccCCccHHHHHHHHhhcc
Confidence 45899999999999999999999 77888862 1111 123444432 112234444332110 00
Q ss_pred cC------------CCCCCCCCceeEecC------------CCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHH-ccC
Q 017295 103 HE------------GQGAFEDPDIIHVDD------------SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMK-RSN 157 (374)
Q Consensus 103 ~~------------~~~~~~~~~il~l~~------------~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~-~~~ 157 (374)
.. +...+.+..+-.+++ +.+| +++++|||++++|+.....+++.+.++.+ .+.
T Consensus 442 ~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p--~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~ 519 (608)
T 3j16_B 442 FLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPA--DIYLIDEPSAYLDSEQRIICSKVIRRFILHNKK 519 (608)
T ss_dssp TTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCC--SEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred cccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCC--CEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 00 000112222333443 5789 99999999999999999999999988753 455
Q ss_pred c-----cchHHHHHHHHHHHHHHhC--CCceeccCCCh
Q 017295 158 D-----KQLKIEHELCQRVKAWLQD--GKDVRLGDWKA 188 (374)
Q Consensus 158 ~-----H~~~~~~~~~d~v~~~L~~--G~iv~~~~~~~ 188 (374)
+ |++.++..+||++ .+|++ |+++..+.+.+
T Consensus 520 tviivtHdl~~~~~~aDrv-ivl~~~~g~~~~~g~p~~ 556 (608)
T 3j16_B 520 TAFIVEHDFIMATYLADKV-IVFEGIPSKNAHARAPES 556 (608)
T ss_dssp EEEEECSCHHHHHHHCSEE-EECEEETTTEEECCCCEE
T ss_pred EEEEEeCCHHHHHHhCCEE-EEEeCCCCeEEecCChHH
Confidence 4 9999999999999 88875 77777766543
No 67
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.37 E-value=7e-12 Score=119.08 Aligned_cols=59 Identities=32% Similarity=0.356 Sum_probs=51.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCcccCCceeEEEeC-CcchhhhhhhccCCCCccccchHhhHhhhhc
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIP-DERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~~-s~~pftT~~p~~G~i~~~-g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~ 100 (374)
..|+|+|.||||||||+|.|+|.+..+ +++|+||.....|.+..+ +.+ +.++|+||+..
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~-----------------i~lvDTPG~~~ 71 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQ-----------------IIFLDTPGIYE 71 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEE-----------------EEEEECCCCCC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCe-----------------EEEEECcCCCc
Confidence 459999999999999999999998864 999999999999988876 533 78899999854
No 68
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.35 E-value=6.6e-15 Score=164.40 Aligned_cols=157 Identities=14% Similarity=0.150 Sum_probs=112.7
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhh-------hccC
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKP 82 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~-------~~~~ 82 (374)
+.+||+++++ |.+|||||++|||||||+++|.|. ++|++|.|.++|.++..+.. .+.|
T Consensus 1091 ~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl-----------~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~ 1159 (1321)
T 4f4c_A 1091 EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERF-----------YDTLGGEIFIDGSEIKTLNPEHTRSQIAIVS 1159 (1321)
T ss_dssp SSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTS-----------SCCSSSEEEETTEETTTBCHHHHHTTEEEEC
T ss_pred CCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcC-----------ccCCCCEEEECCEEhhhCCHHHHHhheEEEC
Confidence 4468998875 566999999999999999999999 99999999999998865432 5789
Q ss_pred CCCccccchHhhHhhhhccccC-CCC----------------CCCC--Ccee-----EecC------------CCCCchh
Q 017295 83 KSAVPAFLEIHDIAGLVRGAHE-GQG----------------AFED--PDII-----HVDD------------SVDPVRD 126 (374)
Q Consensus 83 ~~~~~~~~~v~D~~gl~~~~~~-~~~----------------~~~~--~~il-----~l~~------------~~dP~~~ 126 (374)
|+.....-++.|++.++..... ... .+.+ +..+ .+++ ..+| +
T Consensus 1160 Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~--~ 1237 (1321)
T 4f4c_A 1160 QEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNP--K 1237 (1321)
T ss_dssp SSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCC--S
T ss_pred CCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCC--C
Confidence 9986556788888765421110 000 0000 0000 0111 3578 8
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 127 LEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 127 l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
++++|||++.+|.++-..+.+.+.+.. +++| |.+.-+. -||+| .+|++|+++..|+.
T Consensus 1238 ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsTi~-~aD~I-~Vld~G~IvE~Gth 1299 (1321)
T 4f4c_A 1238 ILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNTVM-NADCI-AVVSNGTIIEKGTH 1299 (1321)
T ss_dssp EEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSSTTT-TCSEE-EEESSSSEEEEECH
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHHHH-hCCEE-EEEECCEEEEECCH
Confidence 999999999999998777777776543 4555 8776543 48999 99999999988854
No 69
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.34 E-value=1.1e-12 Score=124.29 Aligned_cols=58 Identities=31% Similarity=0.358 Sum_probs=49.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhh
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~-~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~ 99 (374)
..|+|||+||||||||+|.|+|.+.. +++.|+||.....|.+...+.+ +.++|+||+.
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~-----------------l~l~DTpG~~ 66 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQ-----------------IVFVDTPGLH 66 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEE-----------------EEEEECCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcE-----------------EEEecCcccc
Confidence 35999999999999999999999876 4899999999888877655433 7889999985
No 70
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.34 E-value=1.9e-12 Score=128.90 Aligned_cols=59 Identities=25% Similarity=0.381 Sum_probs=43.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhc
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~-~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~ 100 (374)
.+|+++|.+|+|||||+|.|+|.... ++++|+||.+...+.+.++|.. +.++|++|+.+
T Consensus 176 ~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-----------------~~l~DT~G~~~ 235 (436)
T 2hjg_A 176 IQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQE-----------------FVIVDTAGMRK 235 (436)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEE-----------------EEETTHHHHTC
T ss_pred cEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeE-----------------EEEEECCCcCc
Confidence 57999999999999999999998764 6999999999998999888754 78999999854
No 71
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.34 E-value=1.9e-14 Score=160.75 Aligned_cols=157 Identities=14% Similarity=0.201 Sum_probs=115.8
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhh-------hccC
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKP 82 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~-------~~~~ 82 (374)
++++|+++++ |..++|||++|||||||+++|.|. ++|++|.|.++|.++..+.. .|.+
T Consensus 430 ~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~-----------~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~ 498 (1321)
T 4f4c_A 430 DVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRY-----------YDVLKGKITIDGVDVRDINLEFLRKNVAVVS 498 (1321)
T ss_dssp TSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTS-----------SCCSEEEEEETTEETTTSCHHHHHHHEEEEC
T ss_pred CCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccc-----------cccccCcccCCCccchhccHHHHhhcccccC
Confidence 5678998875 556999999999999999999999 89999999999988765432 5889
Q ss_pred CCCccccchHhhHhhhhccccCCCC---------------CCCC--Cce-----eEecC------------CCCCchhHH
Q 017295 83 KSAVPAFLEIHDIAGLVRGAHEGQG---------------AFED--PDI-----IHVDD------------SVDPVRDLE 128 (374)
Q Consensus 83 ~~~~~~~~~v~D~~gl~~~~~~~~~---------------~~~~--~~i-----l~l~~------------~~dP~~~l~ 128 (374)
|+....+-++.|+..++......+. .+.+ +.. ..+++ ..+| +++
T Consensus 499 Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~--~Il 576 (1321)
T 4f4c_A 499 QEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNP--KIL 576 (1321)
T ss_dssp SSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCC--SEE
T ss_pred CcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCC--CEE
Confidence 9986666799999887642111000 0000 000 11122 4678 999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceeccCC
Q 017295 129 VISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLGDW 186 (374)
Q Consensus 129 ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~~~ 186 (374)
++|||++.+|........+.+.+.. +++| |.+..+ ..||+| .+|++|+++..|+.
T Consensus 577 iLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls~i-~~aD~I-ivl~~G~ive~Gth 636 (1321)
T 4f4c_A 577 LLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLSTI-RNADLI-ISCKNGQVVEVGDH 636 (1321)
T ss_dssp EEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTTTT-TTCSEE-EEEETTEEEEEECH
T ss_pred EEecccccCCHHHHHHHHHHHHHHh-CCCEEEEEcccHHHH-HhCCEE-EEeeCCeeeccCCH
Confidence 9999999999987666666776655 5555 888654 558999 99999999988754
No 72
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.33 E-value=1.3e-12 Score=130.11 Aligned_cols=58 Identities=36% Similarity=0.465 Sum_probs=40.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhc
Q 017295 26 KIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Ltg~~~~-~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~ 100 (374)
+|+|||.||+|||||||.|+|...+ ++++|++|.+...+.+.++|.. +.++|++|+..
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~-----------------~~l~DT~G~~~ 61 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKT-----------------FKLVDTCGVFD 61 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEE-----------------EEEEECTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeE-----------------EEEEECCCccc
Confidence 5899999999999999999998765 5999999999999999998865 68899999853
No 73
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.33 E-value=1.2e-12 Score=117.43 Aligned_cols=59 Identities=27% Similarity=0.278 Sum_probs=46.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCC-C-CCCCCCCcccCCceeEEE-eCCcchhhhhhhccCCCCccccchHhhHhhhh
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLA-I-PAENFPFCTIEPNEARVN-IPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~-~-~~s~~pftT~~p~~G~i~-~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~ 99 (374)
..+|+|+|.+|||||||+|.|++.. . .++++|++|..+....+. ..+. .+.++|++|+.
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-----------------~~~l~DtpG~~ 90 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEP-----------------VAHLVDLPGYG 90 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSC-----------------SEEEEECCCCC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCC-----------------cEEEEcCCCCC
Confidence 3579999999999999999999986 2 568999999876655443 2221 37899999974
No 74
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.32 E-value=4.5e-13 Score=124.83 Aligned_cols=58 Identities=34% Similarity=0.586 Sum_probs=51.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhh
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~ 99 (374)
.+|+|+|+||||||||+|+|+|....++++|++|.+...+.+.+.+.. +.++|+||..
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~-----------------~~l~DtpG~~ 61 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKE-----------------FLVVDLPGIY 61 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEE-----------------EEEEECCCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCce-----------------EEEEeCCCcc
Confidence 569999999999999999999998877999999999999999887754 6788888875
No 75
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.32 E-value=6e-12 Score=121.98 Aligned_cols=60 Identities=35% Similarity=0.428 Sum_probs=49.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhh
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~ 99 (374)
....++++|+||||||||+|.|+|....++++||+|..+..+.+...+.. +.++|++|+.
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~-----------------~~l~Dt~G~~ 225 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFR-----------------YQIIDTPGLL 225 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEE-----------------EEEEECTTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCce-----------------EEEEeCCCcc
Confidence 44679999999999999999999998777899999999888877665433 6777887764
No 76
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.32 E-value=7.7e-13 Score=114.44 Aligned_cols=59 Identities=32% Similarity=0.402 Sum_probs=50.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhh
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~~~-~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl 98 (374)
.+.+|+|+|+||||||||+|.|++... .++++|++|.+...+.+.+++.. +.++|++|+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-----------------~~l~Dt~G~ 62 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMP-----------------LHIIDTAGL 62 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEE-----------------EEEEECCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeE-----------------EEEEECCCc
Confidence 457899999999999999999999875 35899999999999999988754 567788776
No 77
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.31 E-value=1.8e-11 Score=105.23 Aligned_cols=60 Identities=18% Similarity=0.258 Sum_probs=49.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhh
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~ 99 (374)
...+|+++|++|||||||++.|++.......+|.+|.+.....+.+++.. +.++|++|..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~l~Dt~G~~ 66 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKK-----------------ITFLDTPGHE 66 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEE-----------------EEESCCCSSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCce-----------------EEEEECCCCH
Confidence 45679999999999999999999987777888988888888888877654 5678888863
No 78
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.31 E-value=6.6e-12 Score=118.90 Aligned_cols=58 Identities=33% Similarity=0.225 Sum_probs=48.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhh
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~-~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~ 99 (374)
..|+|+|+||||||||+|+|+|.... +++.|+||.....|.+..++.. +.++|+||+.
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~-----------------i~~iDTpG~~ 67 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQ-----------------AIYVDTPGLH 67 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEE-----------------EEEESSSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCee-----------------EEEEECcCCC
Confidence 36999999999999999999999875 4889999998888887765433 6778888874
No 79
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.31 E-value=7.6e-12 Score=125.18 Aligned_cols=62 Identities=24% Similarity=0.343 Sum_probs=47.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhcc
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~~~-~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~~ 101 (374)
...+++++|.+|+|||||+|.|+|... .++++|+||.++..+.+.++|.. ++++|++|+.+.
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~-----------------~~l~DT~G~~~~ 256 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQE-----------------FVIVDTAGMRKK 256 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEE-----------------EEETTGGGTTTB
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCce-----------------EEEEECCCCCcC
Confidence 346799999999999999999998864 45999999999999999988754 789999998654
No 80
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.30 E-value=4.1e-13 Score=132.28 Aligned_cols=139 Identities=14% Similarity=0.108 Sum_probs=91.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhccccCC
Q 017295 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEG 105 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~~~~~~ 105 (374)
.+||+|+||||||||+|+|+|. ..|++|.|.+++.++.. ..+.+|...++.+++.|++++......-
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl-----------~~p~~GsI~~~g~~~t~--~~~v~q~~~~~~ltv~D~~g~~~~~~~~ 137 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGI-----------GNEEEGAAKTGVVEVTM--ERHPYKHPNIPNVVFWDLPGIGSTNFPP 137 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTC-----------CTTSTTSCCCCC----C--CCEEEECSSCTTEEEEECCCGGGSSCCH
T ss_pred EEEEECCCCCcHHHHHHHHhCC-----------CCccCceEEECCeecce--eEEeccccccCCeeehHhhcccchHHHH
Confidence 8999999999999999999999 77899999888766432 1333443334457777877764310000
Q ss_pred CC-----CCCC-CceeEecC------------------------CCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHH--
Q 017295 106 QG-----AFED-PDIIHVDD------------------------SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSM-- 153 (374)
Q Consensus 106 ~~-----~~~~-~~il~l~~------------------------~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~-- 153 (374)
.. .+.. +..+.++. ..+| +++++|||++++|+....+.++.+.+..
T Consensus 138 ~~~L~~~~L~~~~~~~~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkp--dlllLDEPtsgLD~~~~~~l~~~l~~l~~~ 215 (413)
T 1tq4_A 138 DTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKV--DSDITNEADGEPQTFDKEKVLQDIRLNCVN 215 (413)
T ss_dssp HHHHHHTTGGGCSEEEEEESSCCCHHHHHHHHHHHHTTCEEEEEECCH--HHHHHHHHTTCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCccCCeEEeCCCCccHHHHHHHHHHHhcCCCeEEEEecC--cccccCcccccCCHHHHHHHHHHHHHHHHH
Confidence 00 1111 11122222 1267 9999999999999998888888887764
Q ss_pred ---Hcc----C-----ccchHH--HHHHHHHHHHHHhCCC
Q 017295 154 ---KRS----N-----DKQLKI--EHELCQRVKAWLQDGK 179 (374)
Q Consensus 154 ---~~~----~-----~H~~~~--~~~~~d~v~~~L~~G~ 179 (374)
+.+ . +|.+.. +..+|+++...|..|.
T Consensus 216 ~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 216 TFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp HHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred HHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 222 1 377776 8889999966776664
No 81
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.29 E-value=1.8e-11 Score=105.73 Aligned_cols=152 Identities=15% Similarity=0.133 Sum_probs=87.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhccccC
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~~~~~ 104 (374)
.+|+++|.+|||||||++.|++.. ..++|+.|+.......+.+++..+ .+.++|++|.......
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~l~Dt~G~~~~~~~ 70 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEGQ-FVDSYDPTIENTFTKLITVNGQEY---------------HLQLVDTAGQDEYSIF 70 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS-CCSCCCTTCCEEEEEEEEETTEEE---------------EEEEEECCCCCTTCCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC-CCCCCCCCccccEEEEEEECCEEE---------------EEEEEeCCCchhhhHH
Confidence 579999999999999999999654 346666666555555666665431 2577888886432111
Q ss_pred CCCCC-CCCceeEecCCCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCccchHHHHHHHHHHHHHHhCCCceec
Q 017295 105 GQGAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRL 183 (374)
Q Consensus 105 ~~~~~-~~~~il~l~~~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~H~~~~~~~~~d~v~~~L~~G~iv~~ 183 (374)
....+ ..+.++.+.+..+| ..... + ......+
T Consensus 71 ~~~~~~~~~~~i~v~d~~~~----------------~s~~~----~---------------~~~~~~~------------ 103 (181)
T 3t5g_A 71 PQTYSIDINGYILVYSVTSI----------------KSFEV----I---------------KVIHGKL------------ 103 (181)
T ss_dssp CGGGTTTCSEEEEEEETTCH----------------HHHHH----H---------------HHHHHHH------------
T ss_pred HHHHHhcCCEEEEEEECCCH----------------HHHHH----H---------------HHHHHHH------------
Confidence 10011 23455666664444 00110 0 0111111
Q ss_pred cCCChhHHHHHHhccccccCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCC
Q 017295 184 GDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADM 253 (374)
Q Consensus 184 ~~~~~~~~~~l~~~~~~~~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l 253 (374)
.... .....|+++|+||+|.. .......+.++++.... +.+++++||+.+.++.++
T Consensus 104 ----------~~~~-~~~~~p~ilv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~l 159 (181)
T 3t5g_A 104 ----------LDMV-GKVQIPIMLVGNKKDLH--MERVISYEEGKALAESW-NAAFLESSAKENQTAVDV 159 (181)
T ss_dssp ----------HHHC-----CCEEEEEECTTCT--TTCCSCHHHHHHHHHHT-TCEEEECCTTSHHHHHHH
T ss_pred ----------HHhc-CCCCCCEEEEEECccch--hcceecHHHHHHHHHHh-CCcEEEEecCCCCCHHHH
Confidence 0111 11368999999999742 22223345666666554 678999999999887644
No 82
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.29 E-value=4.3e-14 Score=144.09 Aligned_cols=147 Identities=14% Similarity=0.115 Sum_probs=92.1
Q ss_pred cccccCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEE-----------EeCCcchhhhhh-h------
Q 017295 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARV-----------NIPDERFEWLCQ-L------ 79 (374)
Q Consensus 18 L~~i~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i-----------~~~g~~~~~l~~-~------ 79 (374)
|..+..|..+|||||||||||||+|+|+|. +.|+.|.+ .+.|.++....+ .
T Consensus 19 l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl-----------~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~ 87 (538)
T 3ozx_A 19 LPTPKNNTILGVLGKNGVGKTTVLKILAGE-----------IIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELK 87 (538)
T ss_dssp CCCCCTTEEEEEECCTTSSHHHHHHHHTTS-----------SCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCC
T ss_pred CCCCCCCCEEEEECCCCCcHHHHHHHHhcC-----------CCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccc
Confidence 444567888999999999999999999999 78999987 455655432111 0
Q ss_pred --ccCCCC--c--cccchHhhHhhhhcccc--------CCCCCCCCCceeEecC------------CCCCchhHHHHHHH
Q 017295 80 --FKPKSA--V--PAFLEIHDIAGLVRGAH--------EGQGAFEDPDIIHVDD------------SVDPVRDLEVISAE 133 (374)
Q Consensus 80 --~~~~~~--~--~~~~~v~D~~gl~~~~~--------~~~~~~~~~~il~l~~------------~~dP~~~l~ilde~ 133 (374)
...+.. . ....++.+......... -+...+.+..+-.+++ +.+| +++++|||
T Consensus 88 ~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p--~illlDEP 165 (538)
T 3ozx_A 88 IVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREA--DVYIFDQP 165 (538)
T ss_dssp EEEECSCTTGGGTTCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCC--SEEEEEST
T ss_pred hhhccchhhhhhhhccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCC--CEEEEECC
Confidence 001100 0 00011222111000000 0000111222223333 5689 99999999
Q ss_pred HHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCC
Q 017295 134 LRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGK 179 (374)
Q Consensus 134 l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~ 179 (374)
++++|+.......+.+.++.+ +.+ |++.++..+||++ .+|+.|.
T Consensus 166 ts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~~~~~~~d~i-~vl~~~~ 214 (538)
T 3ozx_A 166 SSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLIVLDYLTDLI-HIIYGES 214 (538)
T ss_dssp TTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHHHHHHHCSEE-EEEEEET
T ss_pred cccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChHHHHhhCCEE-EEecCCc
Confidence 999999999999999888753 544 9999999999998 7776544
No 83
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.29 E-value=8e-12 Score=107.44 Aligned_cols=152 Identities=20% Similarity=0.186 Sum_probs=89.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhcccc
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~~~~ 103 (374)
..+|+++|++|||||||++.|++........|..|.+.....+.+++..+ .+.++|++|......
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~i~Dt~G~~~~~~ 73 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKV---------------KLQIWDTAGQERFRT 73 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEE---------------EEEEEEETTGGGCSS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEE---------------EEEEEcCCCchhhhh
Confidence 35799999999999999999999876666777777777777777776431 267788888532211
Q ss_pred CCCCCC-CCCceeEecCCCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCccchHHHHHHHHHHHHHHhCCCcee
Q 017295 104 EGQGAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVR 182 (374)
Q Consensus 104 ~~~~~~-~~~~il~l~~~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~H~~~~~~~~~d~v~~~L~~G~iv~ 182 (374)
.....+ ..+.++.+.+..+| ..... +..+...+
T Consensus 74 ~~~~~~~~~d~~i~v~d~~~~----------------~s~~~-------------------~~~~~~~~----------- 107 (181)
T 3tw8_B 74 ITSTYYRGTHGVIVVYDVTSA----------------ESFVN-------------------VKRWLHEI----------- 107 (181)
T ss_dssp CCGGGGTTCSEEEEEEETTCH----------------HHHHH-------------------HHHHHHHH-----------
T ss_pred hHHHHhccCCEEEEEEECCCH----------------HHHHH-------------------HHHHHHHH-----------
Confidence 111112 23455666664444 00000 00111111
Q ss_pred ccCCChhHHHHHHhccccccCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCC
Q 017295 183 LGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADM 253 (374)
Q Consensus 183 ~~~~~~~~~~~l~~~~~~~~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l 253 (374)
... ....|+++|+||+|.. .......+...++.... +.+++++||+.+.++.++
T Consensus 108 ------------~~~--~~~~p~ilv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l 161 (181)
T 3tw8_B 108 ------------NQN--CDDVCRILVGNKNDDP--ERKVVETEDAYKFAGQM-GIQLFETSAKENVNVEEM 161 (181)
T ss_dssp ------------HHH--CTTSEEEEEEECTTCG--GGCCSCHHHHHHHHHHH-TCCEEECBTTTTBSHHHH
T ss_pred ------------HHh--CCCCCEEEEEECCCCc--hhcccCHHHHHHHHHHc-CCeEEEEECCCCCCHHHH
Confidence 000 1258999999999742 22222334455555444 568999999998877655
No 84
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.29 E-value=6.4e-12 Score=107.10 Aligned_cols=48 Identities=29% Similarity=0.284 Sum_probs=29.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcc
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~ 72 (374)
.+|+++|++|||||||++.+++........+.+|.+.....+.+++..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEE 50 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEE
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeE
Confidence 469999999999999999999876655556666666666777776643
No 85
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.28 E-value=4e-12 Score=110.58 Aligned_cols=58 Identities=36% Similarity=0.623 Sum_probs=49.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhh
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~ 99 (374)
.+|+|+|++|||||||++.|++....++++|++|.++..+.+.+++.. +.++|++|..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~-----------------~~l~Dt~G~~ 65 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEK-----------------FKVVDLPGVY 65 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEE-----------------EEEEECCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcE-----------------EEEEECCCcC
Confidence 579999999999999999999987667899999999999999887643 6778888763
No 86
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.27 E-value=2e-11 Score=103.99 Aligned_cols=153 Identities=16% Similarity=0.200 Sum_probs=83.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhcccc
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~~~~ 103 (374)
..+|+++|++|||||||++.+++........|..+.+.....+.+++..+ .+.++|++|......
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~---------------~l~i~Dt~G~~~~~~ 70 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRV---------------NLAIWDTAGQERFHA 70 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEE---------------EEEEEECCCC-----
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEE---------------EEEEEECCCcHhhhh
Confidence 35799999999999999999998754433444433333344555554321 256778887532211
Q ss_pred CCCCCC-CCCceeEecCCCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCccchHHHHHHHHHHHHHHhCCCcee
Q 017295 104 EGQGAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVR 182 (374)
Q Consensus 104 ~~~~~~-~~~~il~l~~~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~H~~~~~~~~~d~v~~~L~~G~iv~ 182 (374)
.....+ ..+.++.+.+..++ ..... + ..+...+
T Consensus 71 ~~~~~~~~~d~~i~v~d~~~~----------------~s~~~----~---------------~~~~~~~----------- 104 (170)
T 1z08_A 71 LGPIYYRDSNGAILVYDITDE----------------DSFQK----V---------------KNWVKEL----------- 104 (170)
T ss_dssp --CCSSTTCSEEEEEEETTCH----------------HHHHH----H---------------HHHHHHH-----------
T ss_pred hHHHHhccCCEEEEEEECcCH----------------HHHHH----H---------------HHHHHHH-----------
Confidence 111122 23445666664443 00010 0 0111111
Q ss_pred ccCCChhHHHHHHhccccccCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCC
Q 017295 183 LGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADM 253 (374)
Q Consensus 183 ~~~~~~~~~~~l~~~~~~~~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l 253 (374)
.... ....|+++|+||+|.. .......+.++++.... +.+++++||+.+.++.++
T Consensus 105 ------------~~~~-~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l 159 (170)
T 1z08_A 105 ------------RKML-GNEICLCIVGNKIDLE--KERHVSIQEAESYAESV-GAKHYHTSAKQNKGIEEL 159 (170)
T ss_dssp ------------HHHH-GGGSEEEEEEECGGGG--GGCCSCHHHHHHHHHHT-TCEEEEEBTTTTBSHHHH
T ss_pred ------------HHhc-CCCCeEEEEEECcccc--cccccCHHHHHHHHHHc-CCeEEEecCCCCCCHHHH
Confidence 0000 1258999999999742 22223345666666554 578999999998776544
No 87
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.27 E-value=7.8e-12 Score=112.98 Aligned_cols=59 Identities=25% Similarity=0.443 Sum_probs=44.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhh
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~ 99 (374)
..+|+++|.+|||||||+|.|++.....+++|++|.....+.+.+.+.. +.++|++|..
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~-----------------~~l~DtpG~~ 87 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNK-----------------YQIIDTPGLL 87 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEE-----------------EEEEECTTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCe-----------------EEEEECCCCc
Confidence 4679999999999999999999987666889999998887777665433 6788988874
No 88
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.27 E-value=3.3e-12 Score=128.27 Aligned_cols=62 Identities=32% Similarity=0.312 Sum_probs=34.4
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhc
Q 017295 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (374)
Q Consensus 22 ~~~~~vgLvG~nGaGKSTL~n~Ltg~~~-~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~ 100 (374)
..+.+|+|+|++|||||||+|.|++... .++++|+||.++....+.++|.+ +.++|++|+..
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~-----------------l~liDT~G~~~ 293 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTM-----------------FRLTDTAGLRE 293 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEE-----------------EEEEC------
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeE-----------------EEEEECCCCCc
Confidence 3467799999999999999999999865 46999999999999999988754 78899999853
No 89
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.26 E-value=2.2e-11 Score=103.43 Aligned_cols=57 Identities=23% Similarity=0.204 Sum_probs=32.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhh
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~-~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~ 99 (374)
.+|+++|++|||||||+|.++|.... .++.+++|.. ..+.+++..+ .+.+.|++|..
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~---------------~~~i~D~~g~~ 60 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD---RSIVVDGEEA---------------SLMVYDIWEQD 60 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC----------CEEE---EEEEETTEEE---------------EEEEEECC---
T ss_pred EEEEEECCCCCCHHHHHHHHcCccccCCCCccccceE---EEEEECCEEE---------------EEEEEECCCCc
Confidence 57999999999999999999987653 3566666653 2344444321 25677777754
No 90
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.26 E-value=1.1e-11 Score=108.38 Aligned_cols=60 Identities=20% Similarity=0.269 Sum_probs=46.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhh
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl 98 (374)
..+|+++|++|||||||++.|++........|.+|.+.....+.+++..+ .+.++|++|.
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~i~Dt~G~ 75 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI---------------KLQIWDTAGQ 75 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEE---------------EEEEEEECCS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEE---------------EEEEEECCCc
Confidence 35799999999999999999999876667777777777777777766431 2567777774
No 91
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.25 E-value=3.8e-13 Score=137.26 Aligned_cols=149 Identities=15% Similarity=0.174 Sum_probs=95.0
Q ss_pred ccccccc---CCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEE---------EeCCcchhhhh------
Q 017295 16 PILGRFS---SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARV---------NIPDERFEWLC------ 77 (374)
Q Consensus 16 ~vL~~i~---~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i---------~~~g~~~~~l~------ 77 (374)
.+|.+++ .|..+||+|+||||||||+|+|+|. +.|++|.+ .+.|..+....
T Consensus 36 ~~l~~vs~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl-----------~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 104 (538)
T 1yqt_A 36 FVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQ-----------LIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNG 104 (538)
T ss_dssp CEEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTS-----------SCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTT
T ss_pred ccccCcCcCCCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCccCcchhhhHHhhCCccHHHHHHHHHHH
Confidence 4677764 6778999999999999999999999 77888874 34555432210
Q ss_pred ---hhccCCCC--ccc--cchHhhHhhhhcccc--------CCCCCCCCCceeEecC------------CCCCchhHHHH
Q 017295 78 ---QLFKPKSA--VPA--FLEIHDIAGLVRGAH--------EGQGAFEDPDIIHVDD------------SVDPVRDLEVI 130 (374)
Q Consensus 78 ---~~~~~~~~--~~~--~~~v~D~~gl~~~~~--------~~~~~~~~~~il~l~~------------~~dP~~~l~il 130 (374)
..+.+|.. .+. ..++.++........ -+...+.+..+-.+++ +.+| +++++
T Consensus 105 ~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P--~lLlL 182 (538)
T 1yqt_A 105 EIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNA--TFYFF 182 (538)
T ss_dssp SCCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCC--SEEEE
T ss_pred hhhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCC--CEEEE
Confidence 01222221 010 012333221100000 0000111222223333 5689 99999
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCC
Q 017295 131 SAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDG 178 (374)
Q Consensus 131 de~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G 178 (374)
|||++.+|+......++.+.++.+.+.+ |++..+..+||++ .+|+++
T Consensus 183 DEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri-~vl~~~ 234 (538)
T 1yqt_A 183 DEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDII-HVVYGE 234 (538)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEE-EEEEEE
T ss_pred ECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE-EEEcCc
Confidence 9999999999999999999888765554 9999999999999 777654
No 92
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.25 E-value=1.5e-13 Score=141.94 Aligned_cols=149 Identities=14% Similarity=0.170 Sum_probs=95.0
Q ss_pred ccccccc---CCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEE---------EeCCcchhhhh------
Q 017295 16 PILGRFS---SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARV---------NIPDERFEWLC------ 77 (374)
Q Consensus 16 ~vL~~i~---~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i---------~~~g~~~~~l~------ 77 (374)
.+|.+++ .|..+||+|+||||||||+++|+|. +.|++|.+ .+.|..+....
T Consensus 106 ~~l~~vs~i~~Ge~~~LiG~NGsGKSTLlkiL~Gl-----------l~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~ 174 (607)
T 3bk7_A 106 FVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQ-----------LIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNG 174 (607)
T ss_dssp CEEECCCCCCTTSEEEEECCTTSSHHHHHHHHTTS-----------SCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHT
T ss_pred eeeCCCCCCCCCCEEEEECCCCChHHHHHHHHhCC-----------CCCCCCccccccchhhheeCCEehhhhhhhhhhh
Confidence 3677664 6678999999999999999999999 77888875 34555442210
Q ss_pred ---hhccCCCC-c-cc--cchHhhHhhhhcccc--------CCCCCCCCCceeEecC------------CCCCchhHHHH
Q 017295 78 ---QLFKPKSA-V-PA--FLEIHDIAGLVRGAH--------EGQGAFEDPDIIHVDD------------SVDPVRDLEVI 130 (374)
Q Consensus 78 ---~~~~~~~~-~-~~--~~~v~D~~gl~~~~~--------~~~~~~~~~~il~l~~------------~~dP~~~l~il 130 (374)
..+.+|.. . +. ..++.+++....... -+...+.+..+-.+++ +.+| +++++
T Consensus 175 ~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P--~lLlL 252 (607)
T 3bk7_A 175 EIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKA--HFYFF 252 (607)
T ss_dssp SCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCC--SEEEE
T ss_pred hcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCC--CEEEE
Confidence 01222321 0 10 013333322100000 0000111122222333 5689 99999
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCC
Q 017295 131 SAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDG 178 (374)
Q Consensus 131 de~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G 178 (374)
|||++++|+......++.+.++.+.+.+ |++..+..+||++ .+|.++
T Consensus 253 DEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri-~vl~~~ 304 (607)
T 3bk7_A 253 DEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVI-HVVYGE 304 (607)
T ss_dssp ECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEE-EEEESC
T ss_pred ECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEE-EEECCC
Confidence 9999999999999999999988765554 9999999999999 777654
No 93
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.24 E-value=1.8e-11 Score=107.06 Aligned_cols=48 Identities=15% Similarity=0.205 Sum_probs=34.7
Q ss_pred cCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCC
Q 017295 202 AKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADM 253 (374)
Q Consensus 202 ~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l 253 (374)
..|+++|+||+|. .......+.+++++... +.+++++||+.+.++.++
T Consensus 147 ~~piilv~NK~D~---~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~l 194 (208)
T 3clv_A 147 NYIIILVANKIDK---NKFQVDILEVQKYAQDN-NLLFIQTSAKTGTNIKNI 194 (208)
T ss_dssp CCEEEEEEECTTC---C-CCSCHHHHHHHHHHT-TCEEEEECTTTCTTHHHH
T ss_pred CCcEEEEEECCCc---ccccCCHHHHHHHHHHc-CCcEEEEecCCCCCHHHH
Confidence 3899999999972 12234456777777654 668999999998776544
No 94
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.24 E-value=6.5e-11 Score=101.78 Aligned_cols=160 Identities=17% Similarity=0.128 Sum_probs=83.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhcccc
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~~~~ 103 (374)
..+|+++|++|||||||++.|++........|..+.+.....+.+++.. ...+.++|++|......
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~l~Dt~G~~~~~~ 73 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDK--------------VATMQVWDTAGQERFQS 73 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSC--------------CEEEEEECCC-------
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCc--------------EEEEEEEECCCChHhhh
Confidence 3579999999999999999999876544444555555555556554211 11367788887532211
Q ss_pred CCCCCC-CCCceeEecCCCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCccchHHHHHHHHHHHHHHhCCCcee
Q 017295 104 EGQGAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVR 182 (374)
Q Consensus 104 ~~~~~~-~~~~il~l~~~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~H~~~~~~~~~d~v~~~L~~G~iv~ 182 (374)
.....+ ..+.++.+.+..++. .... + ..+...+...
T Consensus 74 ~~~~~~~~~d~~i~v~d~~~~~----------------s~~~----~---------------~~~~~~~~~~-------- 110 (182)
T 1ky3_A 74 LGVAFYRGADCCVLVYDVTNAS----------------SFEN----I---------------KSWRDEFLVH-------- 110 (182)
T ss_dssp ---CCSTTCCEEEEEEETTCHH----------------HHHT----H---------------HHHHHHHHHH--------
T ss_pred hhHHHhhcCCEEEEEEECCChH----------------HHHH----H---------------HHHHHHHHHH--------
Confidence 111112 234556666654440 0000 0 0111111000
Q ss_pred ccCCChhHHHHHHhccccccCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCC
Q 017295 183 LGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADM 253 (374)
Q Consensus 183 ~~~~~~~~~~~l~~~~~~~~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l 253 (374)
.........|+++|+||+|... .......+.++++.....+.+++++||+.+.++.++
T Consensus 111 ------------~~~~~~~~~p~ilv~nK~Dl~~-~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 168 (182)
T 1ky3_A 111 ------------ANVNSPETFPFVILGNKIDAEE-SKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTA 168 (182)
T ss_dssp ------------HCCSCTTTCCEEEEEECTTSCG-GGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHH
T ss_pred ------------hcccCcCCCcEEEEEECCcccc-ccccCCHHHHHHHHHhcCCCeEEEEecCCCCCHHHH
Confidence 0001123689999999997521 111123455666654334668999999998776544
No 95
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.24 E-value=1.3e-13 Score=142.16 Aligned_cols=58 Identities=9% Similarity=0.054 Sum_probs=49.3
Q ss_pred CCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCc
Q 017295 120 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKD 180 (374)
Q Consensus 120 ~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~i 180 (374)
+.+| +++++|||++++|+.......+.+.++.+++.+ |++.++..++|++ .+|..+..
T Consensus 237 ~~~p--~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv-~vl~~~~~ 299 (608)
T 3j16_B 237 VQEA--DVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFV-CIIYGVPS 299 (608)
T ss_dssp HSCC--SEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEE-EEEESCTT
T ss_pred HhCC--CEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE-EEEeCCcc
Confidence 5678 999999999999999999999999887655554 9999999999999 77876543
No 96
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.23 E-value=4.9e-11 Score=105.52 Aligned_cols=153 Identities=16% Similarity=0.152 Sum_probs=90.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhcccc
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~~~~ 103 (374)
..+|+++|++|||||||++.|++........|..+.+.....+.+++..+ .+.++|++|......
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~---------------~~~l~Dt~G~~~~~~ 72 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTV---------------KLQIWDTAGQERFRT 72 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEE---------------EEEEECCTTTTTTTC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEE---------------EEEEEeCCChHHHHH
Confidence 35799999999999999999999866555566666655556676665421 267888888532211
Q ss_pred CCCCCC-CCCceeEecCCCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCccchHHHHHHHHHHHHHHhCCCcee
Q 017295 104 EGQGAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVR 182 (374)
Q Consensus 104 ~~~~~~-~~~~il~l~~~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~H~~~~~~~~~d~v~~~L~~G~iv~ 182 (374)
.....+ ..+.++.+.+..+|. .... +..+...+
T Consensus 73 ~~~~~~~~~d~vilv~d~~~~~----------------s~~~-------------------~~~~~~~i----------- 106 (206)
T 2bcg_Y 73 ITSSYYRGSHGIIIVYDVTDQE----------------SFNG-------------------VKMWLQEI----------- 106 (206)
T ss_dssp CCGGGGTTCSEEEEEEETTCHH----------------HHHH-------------------HHHHHHHH-----------
T ss_pred HHHHhccCCCEEEEEEECcCHH----------------HHHH-------------------HHHHHHHH-----------
Confidence 111012 234566666654440 0000 00111111
Q ss_pred ccCCChhHHHHHHhccccccCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCC
Q 017295 183 LGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADM 253 (374)
Q Consensus 183 ~~~~~~~~~~~l~~~~~~~~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l 253 (374)
.... ....|+++|+||+|.. .......+..+++.... +.+++++||+.+.++.++
T Consensus 107 ------------~~~~-~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~g~gi~~l 161 (206)
T 2bcg_Y 107 ------------DRYA-TSTVLKLLVGNKCDLK--DKRVVEYDVAKEFADAN-KMPFLETSALDSTNVEDA 161 (206)
T ss_dssp ------------HHHS-CTTCEEEEEEECTTCT--TTCCSCHHHHHHHHHHT-TCCEEECCTTTCTTHHHH
T ss_pred ------------HHhc-CCCCCEEEEEECCCCc--cccccCHHHHHHHHHHc-CCeEEEEeCCCCCCHHHH
Confidence 1111 1258999999999742 21222344555555444 568999999998887654
No 97
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.23 E-value=4e-11 Score=105.87 Aligned_cols=153 Identities=15% Similarity=0.090 Sum_probs=81.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhcccc
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~~~~ 103 (374)
..+|+|+|.+|||||||+|.|++.... ..|+.|+.......+.+++.. ..+.++|++|......
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~~~ 87 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGEFS-EGYDPTVENTYSKIVTLGKDE---------------FHLHLVDTAGQDEYSI 87 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCC-SCCCCCSEEEEEEEEC----C---------------EEEEEEEECCCCTTCC
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCCC-CCCCCccceEEEEEEEECCEE---------------EEEEEEECCCccchHH
Confidence 467999999999999999999987543 344444333223333333321 1257788888532211
Q ss_pred CCCCCC-CCCceeEecCCCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCccchHHHHHHHHHHHHHHhCCCcee
Q 017295 104 EGQGAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVR 182 (374)
Q Consensus 104 ~~~~~~-~~~~il~l~~~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~H~~~~~~~~~d~v~~~L~~G~iv~ 182 (374)
.....+ ..+.++.+.+..++ ..... +..+...+ .
T Consensus 88 ~~~~~~~~~d~~i~v~d~~~~----------------~s~~~-------------------~~~~~~~i---~------- 122 (201)
T 3oes_A 88 LPYSFIIGVHGYVLVYSVTSL----------------HSFQV-------------------IESLYQKL---H------- 122 (201)
T ss_dssp CCGGGTTTCCEEEEEEETTCH----------------HHHHH-------------------HHHHHHHH---H-------
T ss_pred HHHHHHhcCCEEEEEEeCCCH----------------HHHHH-------------------HHHHHHHH---H-------
Confidence 110012 23455666664444 00010 01111111 0
Q ss_pred ccCCChhHHHHHHhccccccCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCC
Q 017295 183 LGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADM 253 (374)
Q Consensus 183 ~~~~~~~~~~~l~~~~~~~~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l 253 (374)
........|+++|+||+|.. .......+..+++.... +.+++.+||+.+.++.++
T Consensus 123 -------------~~~~~~~~piilv~nK~Dl~--~~~~v~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~l 177 (201)
T 3oes_A 123 -------------EGHGKTRVPVVLVGNKADLS--PEREVQAVEGKKLAESW-GATFMESSARENQLTQGI 177 (201)
T ss_dssp -------------C-----CCCEEEEEECTTCG--GGCCSCHHHHHHHHHHH-TCEEEECCTTCHHHHHHH
T ss_pred -------------HhcCCCCCCEEEEEECccCc--cccccCHHHHHHHHHHh-CCeEEEEeCCCCCCHHHH
Confidence 00011368999999999742 22222334455555444 568999999999887644
No 98
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.23 E-value=1.3e-11 Score=107.05 Aligned_cols=47 Identities=26% Similarity=0.311 Sum_probs=36.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCc
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDE 71 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~ 71 (374)
..+|+++|++|||||||+|.|++... ..+++.||.......+.+++.
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~ 50 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGE 50 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSC-CCCCCTTCCEEEEEEEEETTE
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCCchheEEEEEEECCc
Confidence 35799999999999999999998653 567777776666666666654
No 99
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.23 E-value=3.1e-11 Score=105.58 Aligned_cols=154 Identities=18% Similarity=0.150 Sum_probs=85.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhccc
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~~~ 102 (374)
...+|+++|++|||||||++.|++........|..+.+.....+.+++..+ .++++|++|.....
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~---------------~~~i~Dt~G~~~~~ 84 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQI---------------KLQIWDTAGQESFR 84 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEE---------------EEEEECCTTGGGTS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEE---------------EEEEEECCCchhhh
Confidence 346799999999999999999998765544455555555555666665321 26778888753211
Q ss_pred cCCCCCC-CCCceeEecCCCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCccchHHHHHHHHHHHHHHhCCCce
Q 017295 103 HEGQGAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV 181 (374)
Q Consensus 103 ~~~~~~~-~~~~il~l~~~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~H~~~~~~~~~d~v~~~L~~G~iv 181 (374)
......+ ..+.++.+.+..++. ..+. +..+...+
T Consensus 85 ~~~~~~~~~~d~ii~v~d~~~~~----------------s~~~-------------------~~~~l~~i---------- 119 (191)
T 2a5j_A 85 SITRSYYRGAAGALLVYDITRRE----------------TFNH-------------------LTSWLEDA---------- 119 (191)
T ss_dssp CCCHHHHTTCSEEEEEEETTCHH----------------HHHT-------------------HHHHHHHH----------
T ss_pred hhHHHHhccCCEEEEEEECCCHH----------------HHHH-------------------HHHHHHHH----------
Confidence 1000011 224455666644430 0000 00111111
Q ss_pred eccCCChhHHHHHHhccccccCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCC
Q 017295 182 RLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADM 253 (374)
Q Consensus 182 ~~~~~~~~~~~~l~~~~~~~~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l 253 (374)
.... ....|+++|+||+|.. .......+..+++.... +.+++.+||+.+.++.++
T Consensus 120 -------------~~~~-~~~~piilv~nK~Dl~--~~~~v~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l 174 (191)
T 2a5j_A 120 -------------RQHS-SSNMVIMLIGNKSDLE--SRRDVKREEGEAFAREH-GLIFMETSAKTACNVEEA 174 (191)
T ss_dssp -------------HHHS-CTTCEEEEEEECTTCG--GGCCSCHHHHHHHHHHH-TCEEEEECTTTCTTHHHH
T ss_pred -------------HHhc-CCCCCEEEEEECcccC--CccccCHHHHHHHHHHc-CCEEEEEeCCCCCCHHHH
Confidence 0000 1268999999999742 21122344555655544 568999999998877644
No 100
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.23 E-value=1.6e-11 Score=104.48 Aligned_cols=60 Identities=27% Similarity=0.306 Sum_probs=38.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhh
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~ 99 (374)
.+|+++|++|||||||++.|++........|.++.+.....+.+++..+ .+.++|++|..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~l~D~~G~~ 63 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKV---------------KLQIWDTAGQE 63 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEE---------------EEEEECCTTGG
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEE---------------EEEEEeCCCCh
Confidence 5799999999999999999998865555555555544455555554321 26777888753
No 101
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.23 E-value=2.5e-11 Score=104.25 Aligned_cols=50 Identities=20% Similarity=0.254 Sum_probs=35.1
Q ss_pred ccCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCC
Q 017295 201 TAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADM 253 (374)
Q Consensus 201 ~~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l 253 (374)
...|+++|+||+|.. ......+.++++.....+.+++++||+.+.++.++
T Consensus 115 ~~~p~i~v~nK~Dl~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 164 (177)
T 1wms_A 115 ESFPFVILGNKIDIS---ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAA 164 (177)
T ss_dssp TTSCEEEEEECTTCS---SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHH
T ss_pred CCCcEEEEEECCccc---ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHH
Confidence 368999999999742 12234556666665344668999999998876544
No 102
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.23 E-value=3.1e-11 Score=105.10 Aligned_cols=56 Identities=30% Similarity=0.242 Sum_probs=41.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhh
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~~-~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~ 99 (374)
..+|+++|++|||||||+|.|++... ..++.|++|..+..... +. .+.++|++|+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~--~~------------------~~~i~Dt~G~~ 79 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLV--NS------------------KYYFVDLPGYG 79 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEE--TT------------------TEEEEECCCBS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEE--CC------------------cEEEEECCCCc
Confidence 35799999999999999999999874 44788888866543222 11 26788999864
No 103
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.22 E-value=1.3e-11 Score=104.54 Aligned_cols=46 Identities=24% Similarity=0.270 Sum_probs=33.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCc
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDE 71 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~ 71 (374)
.+|+++|++|||||||++.|++... ..+++.|+.......+.+++.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~ 50 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGE 50 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CSCCCTTCCEEEEEEEEETTE
T ss_pred EEEEEECCCCCCHHHHHHHHHhCcc-CCCCCCCcceEEEEEEEECCE
Confidence 5699999999999999999998753 355666655544455555543
No 104
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.22 E-value=2.9e-11 Score=107.26 Aligned_cols=154 Identities=20% Similarity=0.174 Sum_probs=88.9
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhcc
Q 017295 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (374)
Q Consensus 22 ~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~~ 101 (374)
....+|+++|++|||||||++.|++........|..+.+.....+.+++..+ .+.++|++|....
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~l~Dt~G~~~~ 82 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKV---------------KLQLWDTAGQERF 82 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEE---------------EEEEECCTTGGGG
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEE---------------EEEEEeCCCcHHH
Confidence 3456799999999999999999998876556666666655556666665321 2677888885322
Q ss_pred ccCCCC-CCCCCceeEecCCCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCccchHHHHHHHHHHHHHHhCCCc
Q 017295 102 AHEGQG-AFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKD 180 (374)
Q Consensus 102 ~~~~~~-~~~~~~il~l~~~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~H~~~~~~~~~d~v~~~L~~G~i 180 (374)
...... ....+.++.+.+..++. .... +..+...+
T Consensus 83 ~~~~~~~~~~~d~ii~v~d~~~~~----------------s~~~-------------------~~~~~~~i--------- 118 (213)
T 3cph_A 83 RTITTAYYRGAMGIILVYDVTDER----------------TFTN-------------------IKQWFKTV--------- 118 (213)
T ss_dssp TCCCHHHHTTCSEEEEEEETTCHH----------------HHHT-------------------HHHHHHHH---------
T ss_pred HHHHHHHhccCCEEEEEEECCCHH----------------HHHH-------------------HHHHHHHH---------
Confidence 110000 11234455666644430 0000 00111111
Q ss_pred eeccCCChhHHHHHHhccccccCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCC
Q 017295 181 VRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADM 253 (374)
Q Consensus 181 v~~~~~~~~~~~~l~~~~~~~~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l 253 (374)
.... ....|+++|+||+|.. ......+..+++.... +.+++++||+.+.++.++
T Consensus 119 --------------~~~~-~~~~piilv~nK~Dl~---~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l 172 (213)
T 3cph_A 119 --------------NEHA-NDEAQLLLVGNKSDME---TRVVTADQGEALAKEL-GIPFIESSAKNDDNVNEI 172 (213)
T ss_dssp --------------HHHT-TTCSEEEEEEECTTCS---SCCSCHHHHHHHHHHH-TCCEEECBTTTTBSSHHH
T ss_pred --------------HHhc-CCCCCEEEEEECCCCc---ccccCHHHHHHHHHHc-CCEEEEEeCCCCCCHHHH
Confidence 0010 1258999999999752 1222344555555444 568999999998877644
No 105
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.22 E-value=4.4e-11 Score=101.49 Aligned_cols=152 Identities=15% Similarity=0.078 Sum_probs=83.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhcccc
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~~~~ 103 (374)
..+|+++|++|||||||+|.|++........|..+.+.....+.+++.. ..+.++|++|......
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~~~ 69 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDED---------------VRLMLWDTAGQEEFDA 69 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEE---------------EEEEEECCTTGGGTTC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEE---------------EEEEEEcCCCcHhHHH
Confidence 3579999999999999999999875433333333333344455555432 1267788887532111
Q ss_pred CCCC-CCCCCceeEecCCCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCccchHHHHHHHHHHHHHHhCCCcee
Q 017295 104 EGQG-AFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVR 182 (374)
Q Consensus 104 ~~~~-~~~~~~il~l~~~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~H~~~~~~~~~d~v~~~L~~G~iv~ 182 (374)
.... ....+.++.+.+..+|. .... +......+
T Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~----------------s~~~-------------------~~~~~~~i----------- 103 (168)
T 1z2a_A 70 ITKAYYRGAQACVLVFSTTDRE----------------SFEA-------------------ISSWREKV----------- 103 (168)
T ss_dssp CCHHHHTTCCEEEEEEETTCHH----------------HHHT-------------------HHHHHHHH-----------
T ss_pred HHHHHhcCCCEEEEEEECcCHH----------------HHHH-------------------HHHHHHHH-----------
Confidence 0000 11224455555544430 0000 00111111
Q ss_pred ccCCChhHHHHHHhccccccCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCC
Q 017295 183 LGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADM 253 (374)
Q Consensus 183 ~~~~~~~~~~~l~~~~~~~~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l 253 (374)
.... ...|+++|+||+|.. .......+.++++.... +.+++++||+.+.++.++
T Consensus 104 ------------~~~~--~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~l 157 (168)
T 1z2a_A 104 ------------VAEV--GDIPTALVQNKIDLL--DDSCIKNEEAEGLAKRL-KLRFYRTSVKEDLNVSEV 157 (168)
T ss_dssp ------------HHHH--CSCCEEEEEECGGGG--GGCSSCHHHHHHHHHHH-TCEEEECBTTTTBSSHHH
T ss_pred ------------HHhC--CCCCEEEEEECcccC--cccccCHHHHHHHHHHc-CCeEEEEecCCCCCHHHH
Confidence 0000 258999999999742 21222345566665554 568999999998776543
No 106
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.21 E-value=7.4e-11 Score=104.09 Aligned_cols=157 Identities=18% Similarity=0.146 Sum_probs=89.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhcccc
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~~~~ 103 (374)
..+|+++|++|||||||++.|++........|..+.+.....+.+++.. ..+.++|++|......
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~~~ 72 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRL---------------VTMQIWDTAGQERFQS 72 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCE---------------EEEEEEEECSSGGGSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEE---------------EEEEEEeCCCcHHHHH
Confidence 3579999999999999999999986544444544444445555555432 1267788888543221
Q ss_pred CCCCCC-CCCceeEecCCCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCccchHHHHHHHHHHHHHHhCCCcee
Q 017295 104 EGQGAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVR 182 (374)
Q Consensus 104 ~~~~~~-~~~~il~l~~~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~H~~~~~~~~~d~v~~~L~~G~iv~ 182 (374)
.....+ ..+.++.+.++.+|. .... + ..+...+....
T Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~----------------s~~~----~---------------~~~~~~~~~~~------- 110 (207)
T 1vg8_A 73 LGVAFYRGADCCVLVFDVTAPN----------------TFKT----L---------------DSWRDEFLIQA------- 110 (207)
T ss_dssp SCCGGGTTCSEEEEEEETTCHH----------------HHHT----H---------------HHHHHHHHHHH-------
T ss_pred hHHHHHhCCcEEEEEEECCCHH----------------HHHH----H---------------HHHHHHHHHhc-------
Confidence 111112 234566666655441 0000 0 01111110000
Q ss_pred ccCCChhHHHHHHhccccccCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCC
Q 017295 183 LGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADM 253 (374)
Q Consensus 183 ~~~~~~~~~~~l~~~~~~~~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l 253 (374)
........|+++|+||+|.. ......+.++++.....+.+++++||+.+.++.++
T Consensus 111 -------------~~~~~~~~piilv~nK~Dl~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 165 (207)
T 1vg8_A 111 -------------SPRDPENFPFVVLGNKIDLE---NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQA 165 (207)
T ss_dssp -------------CCSSGGGSCEEEEEECTTSS---CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHH
T ss_pred -------------ccccCCCCcEEEEEECCCCc---ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHH
Confidence 00011368999999999743 12234455666654334668999999999887655
No 107
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.21 E-value=1.9e-11 Score=107.73 Aligned_cols=59 Identities=25% Similarity=0.296 Sum_probs=42.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhh
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl 98 (374)
..+|+|+|++|||||||++.|++... ..+|+.||.......+.+++..+ .+.++|++|.
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~---------------~~~l~Dt~G~ 72 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEV---------------QIDILDTAGQ 72 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC-CTTCCTTCCEEEEEEEEETTEEE---------------EEEEEECCCT
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceEEEEEEEECCEEE---------------EEEEEcCCCh
Confidence 35799999999999999999998753 46677777665556666665321 2567777774
No 108
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.21 E-value=8.1e-12 Score=110.29 Aligned_cols=48 Identities=31% Similarity=0.356 Sum_probs=39.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcc
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~ 72 (374)
.+|+|||.+|||||||++.++|.......+|.+|.+...+.+.+++..
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEE 71 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEE
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEE
Confidence 579999999999999999999876666677888877777788777654
No 109
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.21 E-value=5.1e-11 Score=103.93 Aligned_cols=49 Identities=10% Similarity=0.061 Sum_probs=34.0
Q ss_pred cCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCC
Q 017295 202 AKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADM 253 (374)
Q Consensus 202 ~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l 253 (374)
..|+++|+||+|.. .......+.++++.... +.+++.+||+.+.++.++
T Consensus 127 ~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~g~gi~~l 175 (189)
T 2gf9_A 127 NAQVILVGNKCDLE--DERVVPAEDGRRLADDL-GFEFFEASAKENINVKQV 175 (189)
T ss_dssp TCEEEEEEECTTCG--GGCCSCHHHHHHHHHHH-TCEEEECBTTTTBSHHHH
T ss_pred CCCEEEEEECcccc--cccCCCHHHHHHHHHHc-CCeEEEEECCCCCCHHHH
Confidence 58999999999742 21222345566665554 568999999998776544
No 110
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.20 E-value=5.3e-11 Score=101.81 Aligned_cols=45 Identities=18% Similarity=0.200 Sum_probs=30.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCcccCCceeEEEeCCc
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDE 71 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~~-s~~pftT~~p~~G~i~~~g~ 71 (374)
.+|+++|++|+|||||++.|++..... .+.+++| .....+.+++.
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~ 50 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGED--VYERTLTVDGE 50 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC-----CCCSSSS--EEEEEEEETTE
T ss_pred EEEEEECCCCccHHHHHHHHhcCCCccccCccccc--eeEEEEEECCE
Confidence 579999999999999999999876532 3344433 23455666654
No 111
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.20 E-value=3.4e-11 Score=104.30 Aligned_cols=153 Identities=14% Similarity=0.137 Sum_probs=87.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhcccc
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~~~~ 103 (374)
..+|+++|++|||||||++.|++........|..+.+.....+.+++..+ .+.++|++|......
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~l~Dt~G~~~~~~ 74 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYV---------------KLQIWDTAGQERFRS 74 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEE---------------EEEEEEECCSGGGHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEE---------------EEEEEeCCCcHHHHH
Confidence 46799999999999999999998866555556555555555666655321 256777777532111
Q ss_pred CCCCCC-CCCceeEecCCCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCccchHHHHHHHHHHHHHHhCCCcee
Q 017295 104 EGQGAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVR 182 (374)
Q Consensus 104 ~~~~~~-~~~~il~l~~~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~H~~~~~~~~~d~v~~~L~~G~iv~ 182 (374)
.....+ ..+.++.+.+..+|. .... +..+...+
T Consensus 75 ~~~~~~~~~d~~i~v~d~~~~~----------------s~~~-------------------~~~~~~~~----------- 108 (186)
T 2bme_A 75 VTRSYYRGAAGALLVYDITSRE----------------TYNA-------------------LTNWLTDA----------- 108 (186)
T ss_dssp HHHTTSTTCSEEEEEEETTCHH----------------HHHT-------------------HHHHHHHH-----------
T ss_pred HHHHHHhcCCEEEEEEECcCHH----------------HHHH-------------------HHHHHHHH-----------
Confidence 000011 234456666644440 0000 00111111
Q ss_pred ccCCChhHHHHHHhccccccCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCC
Q 017295 183 LGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADM 253 (374)
Q Consensus 183 ~~~~~~~~~~~l~~~~~~~~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l 253 (374)
..+. ....|+++|+||+|.. .......+..+++.... +.+++.+||+.+.++.++
T Consensus 109 ------------~~~~-~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l 163 (186)
T 2bme_A 109 ------------RMLA-SQNIVIILCGNKKDLD--ADREVTFLEASRFAQEN-ELMFLETSALTGENVEEA 163 (186)
T ss_dssp ------------HHHS-CTTCEEEEEEECGGGG--GGCCSCHHHHHHHHHHT-TCEEEECCTTTCTTHHHH
T ss_pred ------------HHhc-CCCCcEEEEEECcccc--cccccCHHHHHHHHHHc-CCEEEEecCCCCCCHHHH
Confidence 1111 1368999999999742 21222334555555444 678999999998887644
No 112
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.19 E-value=1e-11 Score=124.34 Aligned_cols=61 Identities=31% Similarity=0.473 Sum_probs=48.7
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhh
Q 017295 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (374)
Q Consensus 22 ~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~-~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~ 99 (374)
..+.+|+|+|++|||||||+|.|++.... ++++|+||.+.....+.++|.+ +.++|++|+.
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~-----------------v~liDT~G~~ 283 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIP-----------------VQVLDTAGIR 283 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEE-----------------EEECC-----
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEE-----------------EEEEECCccc
Confidence 34677999999999999999999998654 6899999999988999888754 6889999984
No 113
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.19 E-value=2.3e-11 Score=105.16 Aligned_cols=46 Identities=24% Similarity=0.270 Sum_probs=34.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCc
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDE 71 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~ 71 (374)
.+|+++|++|||||||++.|++... ...|+.||.......+.+++.
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~ 64 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGE 64 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CCSCCTTCCEEEEEEEEETTE
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCC-CCcCCCccceEEEEEEEECCE
Confidence 5799999999999999999998753 356666665555555555553
No 114
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.19 E-value=1.9e-11 Score=103.70 Aligned_cols=51 Identities=8% Similarity=0.064 Sum_probs=34.8
Q ss_pred ccCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCC
Q 017295 201 TAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADM 253 (374)
Q Consensus 201 ~~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l 253 (374)
...|+++|+||+|.. .......+.++++.....+.+++++||+.+.++.++
T Consensus 107 ~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 157 (167)
T 1c1y_A 107 EDVPMILVGNKCDLE--DERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEI 157 (167)
T ss_dssp SCCCEEEEEECTTCG--GGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHH
T ss_pred CCCcEEEEEECcccc--ccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHH
Confidence 368999999999742 222223456666665544678999999998766533
No 115
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.18 E-value=1.8e-11 Score=105.96 Aligned_cols=153 Identities=15% Similarity=0.158 Sum_probs=65.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhcccc
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~~~~ 103 (374)
..+|+++|++|||||||++.+++........|.++.+.....+.+++.. ..+.++|++|......
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~~~ 72 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKR---------------IKLQIWDTAGQERFRT 72 (183)
T ss_dssp EEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEE---------------EEEEEEEC--------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEE---------------EEEEEEcCCCChhhhh
Confidence 4679999999999999999999764433333433333334455555532 1267888888643221
Q ss_pred CCCCCC-CCCceeEecCCCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCccchHHHHHHHHHHHHHHhCCCcee
Q 017295 104 EGQGAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVR 182 (374)
Q Consensus 104 ~~~~~~-~~~~il~l~~~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~H~~~~~~~~~d~v~~~L~~G~iv~ 182 (374)
.....+ ..+.++.+.+..+|. .... + ..+...+
T Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~----------------s~~~----~---------------~~~~~~i----------- 106 (183)
T 2fu5_C 73 ITTAYYRGAMGIMLVYDITNEK----------------SFDN----I---------------RNWIRNI----------- 106 (183)
T ss_dssp -CCTTTTTCSEEEEEEETTCHH----------------HHHH----H---------------HHHHHHH-----------
T ss_pred hHHHHHhcCCEEEEEEECcCHH----------------HHHH----H---------------HHHHHHH-----------
Confidence 111122 234566666655440 0000 0 0111111
Q ss_pred ccCCChhHHHHHHhccccccCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCC
Q 017295 183 LGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADM 253 (374)
Q Consensus 183 ~~~~~~~~~~~l~~~~~~~~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l 253 (374)
.... ....|+++|+||+|.. .......+.++++.... +.+++.+||+.+.++.++
T Consensus 107 ------------~~~~-~~~~piilv~nK~Dl~--~~~~v~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~l 161 (183)
T 2fu5_C 107 ------------EEHA-SADVEKMILGNKCDVN--DKRQVSKERGEKLALDY-GIKFMETSAKANINVENA 161 (183)
T ss_dssp ------------HHHS-CTTCEEEEEEEC--CC--SCCCSCHHHHHHHHHHH-TCEEEECCC---CCHHHH
T ss_pred ------------HHhc-CCCCCEEEEEECccCC--ccCcCCHHHHHHHHHHc-CCeEEEEeCCCCCCHHHH
Confidence 0000 1258999999999742 21122345566666555 568999999998877654
No 116
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.18 E-value=3.9e-11 Score=106.06 Aligned_cols=155 Identities=16% Similarity=0.141 Sum_probs=81.8
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhcc
Q 017295 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (374)
Q Consensus 22 ~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~~ 101 (374)
+...+|+++|++|||||||++.|++........|..+.+.....+.+++.. ..+.++|++|....
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~l~Dt~G~~~~ 87 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKT---------------VKLQIWDTAGQERF 87 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEE---------------EEEEEECCTTHHHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCee---------------eEEEEEcCCCcHhH
Confidence 444679999999999999999999876555555555555555556665532 12677888876322
Q ss_pred ccCCCCCC-CCCceeEecCCCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCccchHHHHHHHHHHHHHHhCCCc
Q 017295 102 AHEGQGAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKD 180 (374)
Q Consensus 102 ~~~~~~~~-~~~~il~l~~~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~H~~~~~~~~~d~v~~~L~~G~i 180 (374)
.......+ ..+.++.+.+..++. .... +..+...+
T Consensus 88 ~~~~~~~~~~~d~~i~v~d~~~~~----------------s~~~-------------------~~~~~~~~--------- 123 (200)
T 2o52_A 88 RSVTRSYYRGAAGALLVYDITSRE----------------TYNS-------------------LAAWLTDA--------- 123 (200)
T ss_dssp SCCCHHHHTTCSEEEEEEETTCHH----------------HHHT-------------------HHHHHHHH---------
T ss_pred HHHHHHHhccCCEEEEEEECcCHH----------------HHHH-------------------HHHHHHHH---------
Confidence 11000011 234556666644440 0000 00111111
Q ss_pred eeccCCChhHHHHHHhccccccCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCC
Q 017295 181 VRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADM 253 (374)
Q Consensus 181 v~~~~~~~~~~~~l~~~~~~~~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l 253 (374)
.... ....|+++|+||+|.. .......+..+++.... +.+++++||+.+.++.++
T Consensus 124 --------------~~~~-~~~~piilv~nK~Dl~--~~~~v~~~~~~~~~~~~-~~~~~~~SA~~g~gi~~l 178 (200)
T 2o52_A 124 --------------RTLA-SPNIVVILCGNKKDLD--PEREVTFLEASRFAQEN-ELMFLETSALTGENVEEA 178 (200)
T ss_dssp --------------HHHT-CTTCEEEEEEECGGGG--GGCCSCHHHHHHHHHHT-TCEEEEECTTTCTTHHHH
T ss_pred --------------HHhc-CCCCcEEEEEECCCcc--cccccCHHHHHHHHHHc-CCEEEEEeCCCCCCHHHH
Confidence 0000 1268999999999742 21222334555555444 678999999998877644
No 117
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.18 E-value=4.2e-11 Score=101.24 Aligned_cols=49 Identities=14% Similarity=0.180 Sum_probs=33.5
Q ss_pred cCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCC
Q 017295 202 AKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADM 253 (374)
Q Consensus 202 ~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l 253 (374)
..|+++|+||+|.. .......+..+++.... +.+++++||+.+.++.++
T Consensus 108 ~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l 156 (167)
T 1kao_A 108 KVPVILVGNKVDLE--SEREVSSSEGRALAEEW-GCPFMETSAKSKTMVDEL 156 (167)
T ss_dssp CCCEEEEEECGGGG--GGCCSCHHHHHHHHHHH-TSCEEEECTTCHHHHHHH
T ss_pred CCCEEEEEECCccc--ccccCCHHHHHHHHHHh-CCCEEEecCCCCcCHHHH
Confidence 68999999999742 22222334455555444 568999999999887644
No 118
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.18 E-value=4.9e-11 Score=105.94 Aligned_cols=48 Identities=25% Similarity=0.280 Sum_probs=34.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCc
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDE 71 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~ 71 (374)
..+|+|+|++|||||||++.|++........|..+.+.....+.+++.
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~ 73 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGE 73 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTE
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCE
Confidence 357999999999999999999987654444444444444455666653
No 119
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.17 E-value=1.4e-11 Score=114.99 Aligned_cols=67 Identities=27% Similarity=0.231 Sum_probs=39.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh----hhhccCCCC-ccccchHhhHhhh
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----CQLFKPKSA-VPAFLEIHDIAGL 98 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l----~~~~~~~~~-~~~~~~v~D~~gl 98 (374)
...+||||+||||||||+|+|+|. ..|++|.+.++|.++... ...+.+|.. ++..+++.|++++
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~-----------~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~ 70 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKS-----------QVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGF 70 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHH-----------HC------------CCCCCSCCEEEESCC----CCEEEEECCCC-
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhh
Confidence 357999999999999999999999 789999999988765321 124566655 6667899999998
Q ss_pred hcc
Q 017295 99 VRG 101 (374)
Q Consensus 99 ~~~ 101 (374)
+..
T Consensus 71 g~~ 73 (270)
T 3sop_A 71 GDQ 73 (270)
T ss_dssp -CC
T ss_pred hhh
Confidence 643
No 120
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.17 E-value=1.4e-11 Score=108.07 Aligned_cols=48 Identities=19% Similarity=0.230 Sum_probs=29.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCC
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD 70 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g 70 (374)
...+|+++|.+|+|||||++.|++........|..+.+.....+.+++
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~ 72 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRG 72 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETT
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECC
Confidence 346799999999999999999998765444444444444445555554
No 121
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.17 E-value=3.5e-11 Score=112.22 Aligned_cols=64 Identities=28% Similarity=0.425 Sum_probs=40.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCC------CcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhh
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFP------FCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAG 97 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~p------ftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~g 97 (374)
..+|+|+|.+|+|||||+|.|++......++| ++|..++.....+.... ..-.++++|+||
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-------------~~~~l~liDTpG 74 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGG-------------VQLLLTIVDTPG 74 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC---------------CCEEEEEEECCC
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCC-------------eEEEEEEEECCC
Confidence 35799999999999999999999988777775 66666666655543211 011378999999
Q ss_pred hhc
Q 017295 98 LVR 100 (374)
Q Consensus 98 l~~ 100 (374)
+..
T Consensus 75 ~~d 77 (274)
T 3t5d_A 75 FGD 77 (274)
T ss_dssp CSC
T ss_pred ccc
Confidence 854
No 122
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.17 E-value=8.1e-13 Score=138.37 Aligned_cols=65 Identities=12% Similarity=-0.031 Sum_probs=52.4
Q ss_pred CCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHH------hCCCceeccCC
Q 017295 120 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWL------QDGKDVRLGDW 186 (374)
Q Consensus 120 ~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L------~~G~iv~~~~~ 186 (374)
+.+|..+++++|||++++|+.....+++.+.++.+++.+ |++..+ ..||++ .+| ++|+++..++.
T Consensus 218 ~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~i-i~l~~g~~~~~G~i~~~g~~ 293 (670)
T 3ux8_A 218 GSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTM-LAADYL-IDIGPGAGIHGGEVVAAGTP 293 (670)
T ss_dssp HTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHH-HHCSEE-EEECSSSGGGCCSEEEEECH
T ss_pred hhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH-hhCCEE-EEecccccccCCEEEEecCH
Confidence 457722499999999999999999999999988766655 999865 459999 777 88998876643
No 123
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.16 E-value=5.6e-11 Score=102.09 Aligned_cols=58 Identities=24% Similarity=0.206 Sum_probs=42.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhh
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl 98 (374)
.+|+++|.+|||||||+|.|++.. -..+++.||.......+.+++.. ..+.++|++|.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~~Dt~G~ 67 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQSY-FVSDYDPTIEDSYTKICSVDGIP---------------ARLDILDTAGQ 67 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS-CCSSCCTTCCEEEEEEEEETTEE---------------EEEEEEECCCT
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc-CccccCCCcCceEEEEEEECCEE---------------EEEEEEECCCc
Confidence 579999999999999999999873 34667777665555556666532 12567787775
No 124
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.16 E-value=1.1e-10 Score=104.94 Aligned_cols=153 Identities=18% Similarity=0.120 Sum_probs=82.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhcccc
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~~~~ 103 (374)
..+|+|+|++|+|||||++.|++........|..+.+.....+.+++.. ..+.++|++|......
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~~ 77 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKR---------------IKAQIWDTAGQERYRA 77 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEE---------------EEEEEECCTTTTTTTC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEE---------------EEEEEEECCCccchhh
Confidence 3679999999999999999999986655445555555555566666532 1267888888532211
Q ss_pred CCCCCC-CCCceeEecCCCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCccchHHHHHHHHHHHHHHhCCCcee
Q 017295 104 EGQGAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVR 182 (374)
Q Consensus 104 ~~~~~~-~~~~il~l~~~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~H~~~~~~~~~d~v~~~L~~G~iv~ 182 (374)
.....+ ..+.++.+.+..++. .... +..+...+
T Consensus 78 ~~~~~~~~~d~vilV~D~~~~~----------------s~~~-------------------~~~~l~~i----------- 111 (223)
T 3cpj_B 78 ITSAYYRGAVGALIVYDISKSS----------------SYEN-------------------CNHWLSEL----------- 111 (223)
T ss_dssp CCGGGTTTCCEEEEEEC-CCHH----------------HHHH-------------------HHHHHHHH-----------
T ss_pred hHHHHhccCCEEEEEEeCCCHH----------------HHHH-------------------HHHHHHHH-----------
Confidence 111112 234466666654440 0000 00111111
Q ss_pred ccCCChhHHHHHHhccccccCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCC
Q 017295 183 LGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADM 253 (374)
Q Consensus 183 ~~~~~~~~~~~l~~~~~~~~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l 253 (374)
.... ....|+++|+||+|.. .......+.++++.... +.+++++||+.+.++.++
T Consensus 112 ------------~~~~-~~~~piilv~nK~Dl~--~~~~v~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l 166 (223)
T 3cpj_B 112 ------------RENA-DDNVAVGLIGNKSDLA--HLRAVPTEESKTFAQEN-QLLFTETSALNSENVDKA 166 (223)
T ss_dssp ------------HHHC-C--CEEEEEECCGGGG--GGCCSCHHHHHHHHHHT-TCEEEECCCC-CCCHHHH
T ss_pred ------------HHhC-CCCCeEEEEEECcccc--cccccCHHHHHHHHHHc-CCEEEEEeCCCCCCHHHH
Confidence 0011 1258999999999742 21122334556665444 578999999998776543
No 125
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.16 E-value=1.1e-10 Score=101.87 Aligned_cols=53 Identities=6% Similarity=-0.024 Sum_probs=35.7
Q ss_pred ccCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCC
Q 017295 201 TAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADM 253 (374)
Q Consensus 201 ~~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l 253 (374)
...|+++|+||+|...........+.++++.......+++.+||+.+.++.++
T Consensus 118 ~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~l 170 (184)
T 3ihw_A 118 SEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERV 170 (184)
T ss_dssp GGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHH
T ss_pred CCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHH
Confidence 36899999999975211112233456666665553478999999998877644
No 126
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.16 E-value=7.1e-11 Score=103.25 Aligned_cols=49 Identities=10% Similarity=0.081 Sum_probs=33.8
Q ss_pred cCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCC
Q 017295 202 AKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADM 253 (374)
Q Consensus 202 ~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l 253 (374)
..|+++|+||+|.. .......+.++++.... +.+++.+||+.+.++.++
T Consensus 130 ~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l 178 (193)
T 2oil_A 130 TIVVMLVGNKSDLS--QAREVPTEEARMFAENN-GLLFLETSALDSTNVELA 178 (193)
T ss_dssp TCEEEEEEECGGGG--GGCCSCHHHHHHHHHHT-TCEEEEECTTTCTTHHHH
T ss_pred CCeEEEEEECCCcc--cccccCHHHHHHHHHHc-CCEEEEEeCCCCCCHHHH
Confidence 68999999999742 22222345566665444 678999999998876644
No 127
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.16 E-value=1e-10 Score=100.66 Aligned_cols=154 Identities=14% Similarity=0.145 Sum_probs=82.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhcc
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~-s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~~ 101 (374)
...+|+++|++|||||||++.|++..... ...|.++.+.....+.+++.. ..+.++|++|....
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~~~Dt~G~~~~ 73 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVK---------------VKLQMWDTAGQERF 73 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEE---------------EEEEEEECCCC---
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEE---------------EEEEEEeCCCcHHH
Confidence 34679999999999999999999886543 233333333333444555432 12677788875322
Q ss_pred ccCCCCCC-CCCceeEecCCCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCccchHHHHHHHHHHHHHHhCCCc
Q 017295 102 AHEGQGAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKD 180 (374)
Q Consensus 102 ~~~~~~~~-~~~~il~l~~~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~H~~~~~~~~~d~v~~~L~~G~i 180 (374)
.......+ ..+.++.+.+..+|. .... +..+...+
T Consensus 74 ~~~~~~~~~~~d~ii~v~d~~~~~----------------s~~~-------------------~~~~~~~i--------- 109 (180)
T 2g6b_A 74 RSVTHAYYRDAHALLLLYDVTNKA----------------SFDN-------------------IQAWLTEI--------- 109 (180)
T ss_dssp -----CCGGGCSEEEEEEETTCHH----------------HHHT-------------------HHHHHHHH---------
T ss_pred HHHHHHHccCCCEEEEEEECCCHH----------------HHHH-------------------HHHHHHHH---------
Confidence 11111111 234456666644430 0000 00111111
Q ss_pred eeccCCChhHHHHHHhccccccCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCC
Q 017295 181 VRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADM 253 (374)
Q Consensus 181 v~~~~~~~~~~~~l~~~~~~~~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l 253 (374)
.... ....|+++|+||+|.. .......+..+++.... +.+++++||+.+.++.++
T Consensus 110 --------------~~~~-~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l 164 (180)
T 2g6b_A 110 --------------HEYA-QHDVALMLLGNKVDSA--HERVVKREDGEKLAKEY-GLPFMETSAKTGLNVDLA 164 (180)
T ss_dssp --------------HHHS-CTTCEEEEEEECCSTT--SCCCSCHHHHHHHHHHH-TCCEEECCTTTCTTHHHH
T ss_pred --------------HHhC-CCCCcEEEEEECcccC--cccccCHHHHHHHHHHc-CCeEEEEeCCCCCCHHHH
Confidence 1111 1368999999999742 21222344555555444 568999999998776544
No 128
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.15 E-value=6.2e-11 Score=103.32 Aligned_cols=153 Identities=18% Similarity=0.118 Sum_probs=83.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhcccc
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~~~~ 103 (374)
..+|+++|++|||||||++.|++........|..+.+.....+.+++.. ..+.++|++|......
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~~ 79 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNK---------------AKLAIWDTAGQERFRT 79 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEE---------------EEEEEEEECSSGGGCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeE---------------EEEEEEeCCCchhhhh
Confidence 3579999999999999999999876543333333333334445555432 1256778777532111
Q ss_pred CCCC-CCCCCceeEecCCCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCccchHHHHHHHHHHHHHHhCCCcee
Q 017295 104 EGQG-AFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVR 182 (374)
Q Consensus 104 ~~~~-~~~~~~il~l~~~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~H~~~~~~~~~d~v~~~L~~G~iv~ 182 (374)
.... ....+.++.+.+..+|. .... +..+...+
T Consensus 80 ~~~~~~~~~d~ii~v~d~~~~~----------------s~~~-------------------~~~~~~~i----------- 113 (195)
T 1x3s_A 80 LTPSYYRGAQGVILVYDVTRRD----------------TFVK-------------------LDNWLNEL----------- 113 (195)
T ss_dssp SHHHHHTTCCEEEEEEETTCHH----------------HHHT-------------------HHHHHHHH-----------
T ss_pred hhHHHhccCCEEEEEEECcCHH----------------HHHH-------------------HHHHHHHH-----------
Confidence 0000 11224455555544430 0000 00111111
Q ss_pred ccCCChhHHHHHHhccccccCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCC
Q 017295 183 LGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADM 253 (374)
Q Consensus 183 ~~~~~~~~~~~l~~~~~~~~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l 253 (374)
..+......|+++|+||+|... .....+...++.... +.+++++||+.+.++.++
T Consensus 114 ------------~~~~~~~~~p~ilv~nK~Dl~~---~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l 168 (195)
T 1x3s_A 114 ------------ETYCTRNDIVNMLVGNKIDKEN---REVDRNEGLKFARKH-SMLFIEASAKTCDGVQCA 168 (195)
T ss_dssp ------------TTCCSCSCCEEEEEEECTTSSS---CCSCHHHHHHHHHHT-TCEEEECCTTTCTTHHHH
T ss_pred ------------HHhcCcCCCcEEEEEECCcCcc---cccCHHHHHHHHHHc-CCEEEEecCCCCCCHHHH
Confidence 1111123689999999997521 122334555555544 568999999998776544
No 129
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.15 E-value=3.2e-11 Score=105.48 Aligned_cols=49 Identities=10% Similarity=0.045 Sum_probs=33.8
Q ss_pred cCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCC
Q 017295 202 AKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADM 253 (374)
Q Consensus 202 ~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l 253 (374)
..|+++|+||+|.. .......+..+++.... +.+++.+||+.+.++.++
T Consensus 128 ~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l 176 (191)
T 3dz8_A 128 NAQVILVGNKCDME--EERVVPTEKGQLLAEQL-GFDFFEASAKENISVRQA 176 (191)
T ss_dssp TCEEEEEEECTTCG--GGCCSCHHHHHHHHHHH-TCEEEECBTTTTBSHHHH
T ss_pred CCCEEEEEECCCCc--cccccCHHHHHHHHHHc-CCeEEEEECCCCCCHHHH
Confidence 68999999999742 22223344555555544 668999999998876544
No 130
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.14 E-value=8.8e-11 Score=103.49 Aligned_cols=49 Identities=10% Similarity=0.036 Sum_probs=33.8
Q ss_pred cCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCC
Q 017295 202 AKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADM 253 (374)
Q Consensus 202 ~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l 253 (374)
..|+++|+||+|.. .......+.++++.... +.+++++||+.+.++.++
T Consensus 113 ~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l 161 (203)
T 1zbd_A 113 NAQVLLVGNKCDME--DERVVSSERGRQLADHL-GFEFFEASAKDNINVKQT 161 (203)
T ss_dssp SCEEEEEEECTTCT--TSCCSCHHHHHHHHHHH-TCEEEECBTTTTBSSHHH
T ss_pred CCCEEEEEECcccC--cccccCHHHHHHHHHHC-CCeEEEEECCCCCCHHHH
Confidence 68999999999742 21122344555655554 568999999998877644
No 131
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.14 E-value=1.3e-10 Score=102.72 Aligned_cols=88 Identities=20% Similarity=0.297 Sum_probs=51.5
Q ss_pred cccccccCC---ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchH
Q 017295 16 PILGRFSSH---LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEI 92 (374)
Q Consensus 16 ~vL~~i~~~---~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v 92 (374)
.+++.+++. .+|+++|++|||||||++.+++... ..|. .|..++.+.+.+++.. +.+
T Consensus 14 ~~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~--~~~~-~t~~~~~~~~~~~~~~-----------------l~i 73 (198)
T 1f6b_A 14 SVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRL--GQHV-PTLHPTSEELTIAGMT-----------------FTT 73 (198)
T ss_dssp HHHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSCC---------CCCCCSCEEEEETTEE-----------------EEE
T ss_pred HHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhcCCC--CccC-CCCCceeEEEEECCEE-----------------EEE
Confidence 466666543 4699999999999999999998653 2232 3566777888877633 567
Q ss_pred hhHhhhhccccCCCCCC-CCCceeEecCCCCC
Q 017295 93 HDIAGLVRGAHEGQGAF-EDPDIIHVDDSVDP 123 (374)
Q Consensus 93 ~D~~gl~~~~~~~~~~~-~~~~il~l~~~~dP 123 (374)
.|++|...........+ ..+.++.+.+..++
T Consensus 74 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~ 105 (198)
T 1f6b_A 74 FDLGGHIQARRVWKNYLPAINGIVFLVDCADH 105 (198)
T ss_dssp EEECC----CCGGGGGGGGCSEEEEEEETTCG
T ss_pred EECCCcHhhHHHHHHHHhcCCEEEEEEECCCH
Confidence 77777432111000011 23456666665555
No 132
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.14 E-value=4.1e-11 Score=106.92 Aligned_cols=52 Identities=12% Similarity=-0.031 Sum_probs=40.8
Q ss_pred CCCchhHHHHHHHHHhh----cHHHHHHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHH
Q 017295 121 VDPVRDLEVISAELRLK----DIEFMERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWL 175 (374)
Q Consensus 121 ~dP~~~l~ilde~l~~~----D~~~~~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L 175 (374)
.+| .+.++|||+.++ |......+++.+.++.++ +.+ |+++++..+||++ .+|
T Consensus 140 ~~p--~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i-~~l 201 (207)
T 1znw_A 140 APP--SWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSL-LVG 201 (207)
T ss_dssp ECS--CHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHH-HC-
T ss_pred ECC--CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHH-HHh
Confidence 357 899999999997 677777777777777643 443 9999999999999 655
No 133
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.14 E-value=2.4e-10 Score=99.52 Aligned_cols=151 Identities=17% Similarity=0.179 Sum_probs=82.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhccccC
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~~~~~ 104 (374)
.+|+++|.+|||||||++.|++... ..+++.|+.......+.+++.. ..+.++|++|.......
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~~~~ 85 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGET---------------CLLDILDTAGQEEYSAM 85 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEEEEETTEE---------------EEEEEEECCC-------
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCC-ccccCCccceEEEEEEEECCEE---------------EEEEEEECCChHHHHHH
Confidence 5799999999999999999998743 3556666654444555555432 12577888875321111
Q ss_pred CCCCC-CCCceeEecCCCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCccchHHHHHHHHHHHHHHhCCCceec
Q 017295 105 GQGAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRL 183 (374)
Q Consensus 105 ~~~~~-~~~~il~l~~~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~H~~~~~~~~~d~v~~~L~~G~iv~~ 183 (374)
....+ ..+.++.+.+..++ ..... + ..+...+
T Consensus 86 ~~~~~~~~d~~i~v~d~~~~----------------~s~~~----~---------------~~~~~~i------------ 118 (190)
T 3con_A 86 RDQYMRTGEGFLCVFAINNS----------------KSFAD----I---------------NLYREQI------------ 118 (190)
T ss_dssp ----CTTCSEEEEEEETTCH----------------HHHHH----H---------------HHHHHHH------------
T ss_pred HHHhhCcCCEEEEEEECcCH----------------HHHHH----H---------------HHHHHHH------------
Confidence 11112 22445555554433 00000 0 0111111
Q ss_pred cCCChhHHHHHHhccccccCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCC
Q 017295 184 GDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADM 253 (374)
Q Consensus 184 ~~~~~~~~~~l~~~~~~~~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l 253 (374)
..+......|+++|+||+|... .....+.++++.... +.+++++||+.+.++.++
T Consensus 119 -----------~~~~~~~~~p~ilv~nK~Dl~~---~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l 173 (190)
T 3con_A 119 -----------KRVKDSDDVPMVLVGNKCDLPT---RTVDTKQAHELAKSY-GIPFIETSAKTRQGVEDA 173 (190)
T ss_dssp -----------HHHHTCSCCCEEEEEECTTCSC---CCSCHHHHHHHHHHH-TCCEEECCTTTCTTHHHH
T ss_pred -----------HHHhCCCCCeEEEEEECCcCCc---ccCCHHHHHHHHHHc-CCeEEEEeCCCCCCHHHH
Confidence 0011113689999999997421 122345566666554 568999999998776544
No 134
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.14 E-value=1.5e-10 Score=101.07 Aligned_cols=56 Identities=30% Similarity=0.289 Sum_probs=34.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCC--CCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhh
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLA--IPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~--~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~ 99 (374)
..+|+++|++|||||||+|.|++.. ...++.|++|....... +++ .+.++|++|+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~~~------------------~~~l~Dt~G~~ 80 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI--IND------------------ELHFVDVPGYG 80 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE--ETT------------------TEEEEECCCBC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEE--ECC------------------cEEEEECCCCC
Confidence 4679999999999999999999975 24477888887654332 221 27889999974
No 135
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.13 E-value=1.7e-10 Score=98.91 Aligned_cols=59 Identities=20% Similarity=0.254 Sum_probs=43.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhh
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl 98 (374)
.+|+++|++|||||||++.|++........|.++.+.....+.+++..+ .+.++|++|.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~Dt~G~ 73 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTV---------------RLQLWDTAGQ 73 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEE---------------EEEEEEECCS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEE---------------EEEEEECCCc
Confidence 5799999999999999999998765555566666555566666665321 2567777774
No 136
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.13 E-value=1.2e-10 Score=98.12 Aligned_cols=58 Identities=40% Similarity=0.489 Sum_probs=40.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhh
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~-~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~ 99 (374)
.+|+++|++|||||||++.|++.... .+++|++|.++....+.+++.. +.++|++|..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~l~Dt~G~~ 60 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGR-----------------FLLVDTGGLW 60 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEE-----------------EEEEECGGGC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCce-----------------EEEEECCCCC
Confidence 36899999999999999999998764 5889999999888888877643 6788888874
No 137
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.13 E-value=1.2e-10 Score=101.06 Aligned_cols=50 Identities=12% Similarity=0.088 Sum_probs=34.4
Q ss_pred ccCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCC
Q 017295 201 TAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADM 253 (374)
Q Consensus 201 ~~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l 253 (374)
...|+++|+||+|.. .......+.++++.... +.+++++||+.+.++.++
T Consensus 126 ~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~l 175 (195)
T 3bc1_A 126 ENPDIVLCGNKSDLE--DQRAVKEEEARELAEKY-GIPYFETSAANGTNISHA 175 (195)
T ss_dssp SSCCEEEEEECTTCG--GGCCSCHHHHHHHHHHH-TCCEEECCTTTCTTHHHH
T ss_pred CCCCEEEEEECcccc--cccccCHHHHHHHHHHc-CCCEEEEECCCCCCHHHH
Confidence 368999999999742 21222345566665554 568999999998776544
No 138
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.13 E-value=1e-10 Score=100.66 Aligned_cols=52 Identities=4% Similarity=-0.070 Sum_probs=34.8
Q ss_pred cCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCC
Q 017295 202 AKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADM 253 (374)
Q Consensus 202 ~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l 253 (374)
..|+++|+||+|...........+.++++.....+.+++.+||+.+.++.++
T Consensus 108 ~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 159 (178)
T 2iwr_A 108 GLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRV 159 (178)
T ss_dssp CCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHHH
T ss_pred CCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHHH
Confidence 6899999999975211111223455666655444568999999998877654
No 139
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.13 E-value=1.4e-10 Score=101.61 Aligned_cols=88 Identities=25% Similarity=0.402 Sum_probs=50.9
Q ss_pred cccccccC---CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchH
Q 017295 16 PILGRFSS---HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEI 92 (374)
Q Consensus 16 ~vL~~i~~---~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v 92 (374)
.+++++++ ..+|+++|++|||||||++.+++.... .| ..|..++.+.+.+++.. +.+
T Consensus 12 ~~l~~~~~~~~~~ki~~vG~~~vGKSsli~~l~~~~~~--~~-~~t~~~~~~~~~~~~~~-----------------~~i 71 (190)
T 1m2o_B 12 DVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLA--TL-QPTWHPTSEELAIGNIK-----------------FTT 71 (190)
T ss_dssp ------------CEEEEEESTTSSHHHHHHHHHHSCCC--CC-CCCCSCEEEEEEETTEE-----------------EEE
T ss_pred HHHHHhhccCCccEEEEECCCCCCHHHHHHHHhcCCCC--cc-ccCCCCCeEEEEECCEE-----------------EEE
Confidence 34566653 346999999999999999999987542 33 24667778888887643 567
Q ss_pred hhHhhhhccccCCCCCC-CCCceeEecCCCCC
Q 017295 93 HDIAGLVRGAHEGQGAF-EDPDIIHVDDSVDP 123 (374)
Q Consensus 93 ~D~~gl~~~~~~~~~~~-~~~~il~l~~~~dP 123 (374)
.|++|...........+ ..+.++.+.+..++
T Consensus 72 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 103 (190)
T 1m2o_B 72 FDLGGHIQARRLWKDYFPEVNGIVFLVDAADP 103 (190)
T ss_dssp EECCCSGGGTTSGGGGCTTCCEEEEEEETTCG
T ss_pred EECCCCHHHHHHHHHHHhcCCEEEEEEECCCh
Confidence 77777533211100011 23456666665555
No 140
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.12 E-value=8.8e-11 Score=100.65 Aligned_cols=49 Identities=12% Similarity=0.239 Sum_probs=34.4
Q ss_pred cCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCC
Q 017295 202 AKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADM 253 (374)
Q Consensus 202 ~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l 253 (374)
..|+++|+||+|.. .......+.++++.... +.+++++||+.+.++.++
T Consensus 120 ~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l 168 (179)
T 1z0f_A 120 NTVIILIGNKADLE--AQRDVTYEEAKQFAEEN-GLLFLEASAKTGENVEDA 168 (179)
T ss_dssp TCEEEEEEECTTCG--GGCCSCHHHHHHHHHHT-TCEEEECCTTTCTTHHHH
T ss_pred CCcEEEEEECcccc--cccccCHHHHHHHHHHc-CCEEEEEeCCCCCCHHHH
Confidence 68999999999742 22223345666666554 678999999998776544
No 141
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.12 E-value=1.6e-10 Score=101.89 Aligned_cols=48 Identities=21% Similarity=0.322 Sum_probs=38.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcc
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~ 72 (374)
.+++|+|+||||||||+++|+|........|..+.++..|.+.++|..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~ 53 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT 53 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEE
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEE
Confidence 579999999999999999999986655555666667778999998864
No 142
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.12 E-value=9.3e-12 Score=123.83 Aligned_cols=58 Identities=31% Similarity=0.412 Sum_probs=37.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhh
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~-~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~ 99 (374)
.+|+|||+||+|||||||.|+|...+ ++++|++|.+...+.+.+.+.. +.++|++|+.
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~-----------------~~l~DT~G~~ 62 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYD-----------------FNLIDTGGID 62 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSC-----------------CEEEC-----
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCce-----------------EEEEECCCCC
Confidence 46999999999999999999998775 4999999999988888777654 7889999884
No 143
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.12 E-value=3.1e-10 Score=101.85 Aligned_cols=48 Identities=21% Similarity=0.274 Sum_probs=33.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCcccCCceeEEEeCCcc
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDER 72 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~~-s~~pftT~~p~~G~i~~~g~~ 72 (374)
.+|+|||.+|+|||||+|.++|....+ +++|.++.+.....+.++|..
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~ 86 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGES 86 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEE
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCee
Confidence 579999999999999999999865443 556655544445566666643
No 144
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.11 E-value=5e-11 Score=102.38 Aligned_cols=61 Identities=23% Similarity=0.299 Sum_probs=39.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhh
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl 98 (374)
..+|+++|++|||||||++.|++........|..+.+.....+.+++.. ...+.++|++|.
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~--------------~~~~~~~Dt~G~ 66 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNL--------------NVTLQIWDIGGQ 66 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTE--------------EEEEEEEECTTC
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCC--------------EEEEEEEECCCC
Confidence 3579999999999999999999875322222323334445556665411 112677788775
No 145
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.11 E-value=1.8e-10 Score=105.84 Aligned_cols=60 Identities=17% Similarity=0.097 Sum_probs=46.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCC--cccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhh
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPF--CTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pf--tT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~ 99 (374)
...+|+|||.+|||||||+|.|+|....++.+++ +|..+..+.+.+++.. +.++|+||+.
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~-----------------i~liDTPG~~ 81 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCH-----------------VEVVDTPDIF 81 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEE-----------------EEEEECCSCS
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcE-----------------EEEEECCCCC
Confidence 3467999999999999999999999887766655 8999999988887754 7899999985
No 146
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.10 E-value=9.7e-11 Score=101.27 Aligned_cols=50 Identities=10% Similarity=0.010 Sum_probs=34.1
Q ss_pred ccCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHH-HHHHhcCC
Q 017295 201 TAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCA-LERNLADM 253 (374)
Q Consensus 201 ~~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~-~e~~l~~l 253 (374)
...|+++|+||+|.. .......+.++++...+ +.+++++||+ .+.++.++
T Consensus 122 ~~~p~ilv~nK~Dl~--~~~~v~~~~~~~~~~~~-~~~~~~~Sa~~~~~~v~~l 172 (183)
T 3kkq_A 122 ESFPMILVANKVDLM--HLRKVTRDQGKEMATKY-NIPYIETSAKDPPLNVDKT 172 (183)
T ss_dssp SCCCEEEEEECTTCS--TTCCSCHHHHHHHHHHH-TCCEEEEBCSSSCBSHHHH
T ss_pred CCCcEEEEEECCCch--hccCcCHHHHHHHHHHh-CCeEEEeccCCCCCCHHHH
Confidence 368999999999742 21223445566666555 5789999999 87666544
No 147
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.10 E-value=1.1e-10 Score=110.42 Aligned_cols=73 Identities=23% Similarity=0.315 Sum_probs=31.0
Q ss_pred cccccccccCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhh----hhhccCCCC-ccc
Q 017295 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----CQLFKPKSA-VPA 88 (374)
Q Consensus 14 ~~~vL~~i~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l----~~~~~~~~~-~~~ 88 (374)
.+.+++++++ .|+|||+||||||||+|+|+|.. ..|++| +.+.|.++... ...+.++.. ...
T Consensus 10 ~~~~l~~~~~--~I~lvG~nG~GKSTLl~~L~g~~----------~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~ 76 (301)
T 2qnr_A 10 RKSVKKGFEF--TLMVVGESGLGKSTLINSLFLTD----------LYPERV-ISGAAEKIERTVQIEASTVEIEERGVKL 76 (301)
T ss_dssp --------CE--EEEEEEETTSSHHHHHHHHHC-----------------------------------CEEEEC---CCE
T ss_pred CEEEEcCCCE--EEEEECCCCCCHHHHHHHHhCCC----------ccCCCC-cccCCcccCCcceEeeEEEEecCCCccc
Confidence 4568887775 56999999999999999999863 235566 55544432210 012233322 345
Q ss_pred cchHhhHhhhh
Q 017295 89 FLEIHDIAGLV 99 (374)
Q Consensus 89 ~~~v~D~~gl~ 99 (374)
.+++.|++|++
T Consensus 77 ~ltv~Dt~g~~ 87 (301)
T 2qnr_A 77 RLTVVDTPGYG 87 (301)
T ss_dssp EEEEEEEC---
T ss_pred Ccchhhhhhhh
Confidence 67889998885
No 148
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.10 E-value=5.5e-10 Score=101.62 Aligned_cols=60 Identities=20% Similarity=0.221 Sum_probs=47.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCC--CcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhc
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFP--FCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~p--ftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~ 100 (374)
..+|+|+|++|||||||+|+|+|.....+.+| ++|..+..+.+.+++.. +.++|+||+..
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~-----------------i~liDTpG~~~ 90 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETE-----------------LVVVDTPGIFD 90 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEE-----------------EEEEECCSCC-
T ss_pred ceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCce-----------------EEEEECCCccC
Confidence 45799999999999999999999988777777 88998888888887754 78999999854
No 149
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.10 E-value=1.7e-10 Score=101.22 Aligned_cols=49 Identities=20% Similarity=0.303 Sum_probs=41.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcc
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~ 72 (374)
..+++|+|+||||||||++.|+|........|..+.++..|.+.++|.+
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~ 77 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT 77 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEE
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEE
Confidence 3679999999999999999999987665666666667788999998865
No 150
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.09 E-value=6.9e-12 Score=129.74 Aligned_cols=114 Identities=15% Similarity=0.200 Sum_probs=68.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCC-ceeEEEeCCcchhh--------hh--hhccCCCC-ccccchHhh
Q 017295 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP-NEARVNIPDERFEW--------LC--QLFKPKSA-VPAFLEIHD 94 (374)
Q Consensus 27 vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p-~~G~i~~~g~~~~~--------l~--~~~~~~~~-~~~~~~v~D 94 (374)
+||||+||||||||+++|+|. ..| ++|.|.+.|.++.. .. ..|.+|.. +++..++.+
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl-----------~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e 116 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGV-----------ALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEK 116 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSC-----------C-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHT
T ss_pred EEEECCCCChHHHHHHHHhCC-----------CCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHH
Confidence 999999999999999999999 667 79999998877421 11 14556654 556677777
Q ss_pred HhhhhccccCCCC-CCCCC-ceeEecCCCCCchhHHHHHHH------HHhhcHHHHHHHHHHHHHHH
Q 017295 95 IAGLVRGAHEGQG-AFEDP-DIIHVDDSVDPVRDLEVISAE------LRLKDIEFMERRIEDVEKSM 153 (374)
Q Consensus 95 ~~gl~~~~~~~~~-~~~~~-~il~l~~~~dP~~~l~ilde~------l~~~D~~~~~~~~~~i~~~~ 153 (374)
++........+.+ .+... ..+.+.....| ++.++||| +.++|......+.+.+..+.
T Consensus 117 ~i~~~~~~~~~~~~~~s~~~i~l~i~~~~~p--~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l 181 (608)
T 3szr_A 117 EINKAQNAIAGEGMGISHELITLEISSRDVP--DLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYI 181 (608)
T ss_dssp THHHHHHHHHCSSSCCCSCCEEEEEEESSSC--CEEEEECCC------CCSSCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCccccchHHHHHHhcCCCCC--ceeEeeCCCccccccCCCCHHHHHHHHHHHHHHH
Confidence 7765422211111 22222 22334444567 88888999 99999887777777776644
No 151
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.09 E-value=1.2e-10 Score=101.52 Aligned_cols=46 Identities=26% Similarity=0.314 Sum_probs=33.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCC
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD 70 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g 70 (374)
.+|+++|.+|||||||++.|++........|..+.+.....+.+++
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDG 66 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETT
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECC
Confidence 5799999999999999999998765444444444444445555555
No 152
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.09 E-value=1.4e-12 Score=139.84 Aligned_cols=59 Identities=15% Similarity=0.187 Sum_probs=48.0
Q ss_pred CCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCceecc
Q 017295 120 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDVRLG 184 (374)
Q Consensus 120 ~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv~~~ 184 (374)
..+| +++++|||++++|......+.+.+.+. +++ |+++.+..+||++ .+|++|+++..+
T Consensus 917 ~~~P--~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~e~v~~l~DrV-ivL~~G~Iv~~G 980 (986)
T 2iw3_A 917 WQRP--HLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSAEFTKNLTEEV-WAVKDGRMTPSG 980 (986)
T ss_dssp TTCC--SEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCHHHHTTTCCEE-ECCBTTBCCC--
T ss_pred HhCC--CEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECCHHHHHHhCCEE-EEEECCEEEEeC
Confidence 5688 999999999999999888877777543 333 9999999999999 889999987543
No 153
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.09 E-value=3.9e-12 Score=112.23 Aligned_cols=85 Identities=21% Similarity=0.226 Sum_probs=54.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhcccc
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~~~~ 103 (374)
..+|+++|.+|||||||+|.|++........|.+|.+.....+.+++..+ .+.++|++|......
T Consensus 33 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~i~Dt~G~~~~~~ 97 (199)
T 3l0i_B 33 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI---------------KLQIWDTAGQERFRT 97 (199)
T ss_dssp EEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEE---------------EEEEECCTTCTTCCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEE---------------EEEEEECCCcHhHHH
Confidence 35699999999999999999998765555566666666677777766431 267888888532211
Q ss_pred CCCCCC-CCCceeEecCCCCC
Q 017295 104 EGQGAF-EDPDIIHVDDSVDP 123 (374)
Q Consensus 104 ~~~~~~-~~~~il~l~~~~dP 123 (374)
.....+ ..+.++.+.+..++
T Consensus 98 ~~~~~~~~~d~~i~v~d~~~~ 118 (199)
T 3l0i_B 98 ITSSYYRGAHGIIVVYDVTDQ 118 (199)
T ss_dssp CSCC--CCCSEEEECC-CCCS
T ss_pred HHHHHhhcCCEEEEEEECCCH
Confidence 111122 23456666665555
No 154
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.08 E-value=2.7e-10 Score=99.66 Aligned_cols=155 Identities=15% Similarity=0.138 Sum_probs=84.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhccc
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~~~ 102 (374)
...+|+++|.+|+|||||++.+++... ..+|+.|+.......+.+++..+ .+.++|++|.-...
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~---------------~~~i~Dt~G~~~~~ 85 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEI-PTAYVPTVFENFSHVMKYKNEEF---------------ILHLWDTAGQEEYD 85 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEEEEEETTEEE---------------EEEEEEECCSGGGT
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCC-CCccCCeeeeeeEEEEEECCEEE---------------EEEEEECCCcHHHH
Confidence 346799999999999999999998753 24444444333333444444321 25777887743211
Q ss_pred cCCCCCC-CCCceeEecCCCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCccchHHHHHHHHHHHHHHhCCCce
Q 017295 103 HEGQGAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV 181 (374)
Q Consensus 103 ~~~~~~~-~~~~il~l~~~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~H~~~~~~~~~d~v~~~L~~G~iv 181 (374)
......+ ..+.++.+.+..++. ...... ..+...+
T Consensus 86 ~~~~~~~~~~d~~i~v~d~~~~~----------------s~~~~~------------------~~~~~~~---------- 121 (194)
T 3reg_A 86 RLRPLSYADSDVVLLCFAVNNRT----------------SFDNIS------------------TKWEPEI---------- 121 (194)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHH----------------HHHHHH------------------HTHHHHH----------
T ss_pred HHhHhhccCCcEEEEEEECCCHH----------------HHHHHH------------------HHHHHHH----------
Confidence 1100012 234556666654440 001000 0011111
Q ss_pred eccCCChhHHHHHHhccccccCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCe-EEEeeHHHHHHhcCC
Q 017295 182 RLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQ-IIPFSCALERNLADM 253 (374)
Q Consensus 182 ~~~~~~~~~~~~l~~~~~~~~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~-~i~vSa~~e~~l~~l 253 (374)
... ....|+++|+||+|...........+.++++.... +.+ ++.+||+.+.++.++
T Consensus 122 -------------~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l 178 (194)
T 3reg_A 122 -------------KHY--IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKL-GCVAYIEASSVAKIGLNEV 178 (194)
T ss_dssp -------------HHH--CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHH-TCSCEEECBTTTTBSHHHH
T ss_pred -------------HHh--CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhc-CCCEEEEeecCCCCCHHHH
Confidence 111 12589999999997421111223445666666555 444 999999998776544
No 155
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.08 E-value=3.2e-10 Score=99.69 Aligned_cols=86 Identities=19% Similarity=0.156 Sum_probs=47.5
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhcc
Q 017295 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (374)
Q Consensus 22 ~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~~ 101 (374)
....+|+++|.+|||||||++.+++.. -..+|+.||.......+.+++..+ .+.++|++|....
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~i~Dt~G~~~~ 81 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNG-YPTEYIPTAFDNFSAVVSVDGRPV---------------RLQLCDTAGQDEF 81 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC---------CCSSEEEEEEEEETTEEE---------------EEEEEECCCSTTC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCcccceeEEEEEECCEEE---------------EEEEEECCCCHHH
Confidence 445679999999999999999999865 346677777655555566665321 2567787776322
Q ss_pred ccCCCCCC-CCCceeEecCCCCC
Q 017295 102 AHEGQGAF-EDPDIIHVDDSVDP 123 (374)
Q Consensus 102 ~~~~~~~~-~~~~il~l~~~~dP 123 (374)
.......+ ..+.++.+.+..+|
T Consensus 82 ~~~~~~~~~~~~~~i~v~d~~~~ 104 (201)
T 2q3h_A 82 DKLRPLCYTNTDIFLLCFSVVSP 104 (201)
T ss_dssp SSSGGGGGTTCSEEEEEEETTCH
T ss_pred HHHhHhhcCCCcEEEEEEECCCH
Confidence 11100011 23455666665444
No 156
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.08 E-value=5.5e-10 Score=96.02 Aligned_cols=47 Identities=13% Similarity=0.087 Sum_probs=32.5
Q ss_pred cCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhc
Q 017295 202 AKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLA 251 (374)
Q Consensus 202 ~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~ 251 (374)
..|+++|+||+|.. .......+.++++.... +.+++++||+.+.++.
T Consensus 117 ~~p~i~v~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~g~gi~ 163 (181)
T 2efe_B 117 NMVMALAGNKSDLL--DARKVTAEDAQTYAQEN-GLFFMETSAKTATNVK 163 (181)
T ss_dssp TCEEEEEEECTTCT--TTCCSCHHHHHHHHHHT-TCEEEECCSSSCTTHH
T ss_pred CCcEEEEEECCccc--ccccCCHHHHHHHHHHc-CCEEEEEECCCCCCHH
Confidence 58999999999742 21222345666666544 6789999999876654
No 157
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.08 E-value=1.4e-10 Score=102.12 Aligned_cols=158 Identities=18% Similarity=0.135 Sum_probs=59.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCccc-CCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhc
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTI-EPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~-s~~pftT~-~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~ 100 (374)
...+|+++|++|||||||++.|++..... ++++.|+- +.....+.+++... ...+.++|++|...
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~-------------~~~~~l~Dt~G~~~ 85 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTV-------------SVELFLLDTAGSDL 85 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSSE-------------EEEEEEEETTTTHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCccc-------------EEEEEEEECCCcHH
Confidence 34679999999999999999999874333 45555542 45566666665310 01267888888643
Q ss_pred cccCCCCCC-CCCceeEecCCCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCccchHHHHHHHHHHHHHHhCCC
Q 017295 101 GAHEGQGAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGK 179 (374)
Q Consensus 101 ~~~~~~~~~-~~~~il~l~~~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~H~~~~~~~~~d~v~~~L~~G~ 179 (374)
........+ ..+.++.+.+..+|. .... +..+...+
T Consensus 86 ~~~~~~~~~~~~d~~i~v~d~~~~~----------------s~~~-------------------~~~~~~~i-------- 122 (208)
T 2yc2_C 86 YKEQISQYWNGVYYAILVFDVSSME----------------SFES-------------------CKAWFELL-------- 122 (208)
T ss_dssp HHHHHSTTCCCCCEEEEEEETTCHH----------------HHHH-------------------HHHHHHHH--------
T ss_pred HHHHHHHHHhhCcEEEEEEECCCHH----------------HHHH-------------------HHHHHHHH--------
Confidence 211100012 234566666655441 0010 00111111
Q ss_pred ceeccCCChhHHHHHHhccc--cccCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHH-HHHhcCC
Q 017295 180 DVRLGDWKAADIEILNTFQL--LTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCAL-ERNLADM 253 (374)
Q Consensus 180 iv~~~~~~~~~~~~l~~~~~--~~~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~-e~~l~~l 253 (374)
..... ....|+++|+||+|.... ......+.++++.... +.+++++||+. +.++.++
T Consensus 123 ---------------~~~~~~~~~~~piilv~nK~Dl~~~-~~~v~~~~~~~~~~~~-~~~~~~~Sa~~~~~gi~~l 182 (208)
T 2yc2_C 123 ---------------KSARPDRERPLRAVLVANKTDLPPQ-RHQVRLDMAQDWATTN-TLDFFDVSANPPGKDADAP 182 (208)
T ss_dssp ---------------HHHCSCTTSCCEEEEEEECC--------CCCHHHHHHHHHHT-TCEEEECCC-------CHH
T ss_pred ---------------HHhhcccccCCcEEEEEECcccchh-hccCCHHHHHHHHHHc-CCEEEEeccCCCCcCHHHH
Confidence 00000 136899999999974210 1122345666666554 57899999999 9888765
No 158
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.08 E-value=3e-10 Score=99.65 Aligned_cols=49 Identities=10% Similarity=0.102 Sum_probs=33.5
Q ss_pred cCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHH-HhcCC
Q 017295 202 AKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALER-NLADM 253 (374)
Q Consensus 202 ~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~-~l~~l 253 (374)
..|+++|+||+|.. .......+..+++.... +.+++++||+.+. ++.++
T Consensus 132 ~~piilv~NK~Dl~--~~~~v~~~~~~~~~~~~-~~~~~~~Sa~~g~~gi~~l 181 (196)
T 2atv_A 132 NVTLILVGNKADLD--HSRQVSTEEGEKLATEL-ACAFYECSACTGEGNITEI 181 (196)
T ss_dssp CCCEEEEEECGGGG--GGCCSCHHHHHHHHHHH-TSEEEECCTTTCTTCHHHH
T ss_pred CCcEEEEEECcccc--cccccCHHHHHHHHHHh-CCeEEEECCCcCCcCHHHH
Confidence 68999999999742 21222344555555444 5689999999987 76544
No 159
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.08 E-value=2e-10 Score=97.54 Aligned_cols=48 Identities=8% Similarity=0.014 Sum_probs=31.9
Q ss_pred cCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcC
Q 017295 202 AKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLAD 252 (374)
Q Consensus 202 ~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~ 252 (374)
..|+++|+||+|.. .......+..+++.... +.+++++||+.+.++.+
T Consensus 111 ~~~iilv~nK~Dl~--~~~~v~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~ 158 (170)
T 1z0j_A 111 SIVVAIAGNKCDLT--DVREVMERDAKDYADSI-HAIFVETSAKNAININE 158 (170)
T ss_dssp TSEEEEEEECTTCG--GGCCSCHHHHHHHHHHT-TCEEEECBTTTTBSHHH
T ss_pred CCcEEEEEECCccc--cccccCHHHHHHHHHHc-CCEEEEEeCCCCcCHHH
Confidence 57899999999742 21222344555555444 57899999999876543
No 160
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.08 E-value=8.7e-10 Score=95.54 Aligned_cols=39 Identities=36% Similarity=0.280 Sum_probs=33.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCce
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNE 63 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~ 63 (374)
.+|+++|++|||||||++.+++.....+..|++|..+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~ 40 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIE 40 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEE
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEE
Confidence 368999999999999999999988777888988876643
No 161
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.08 E-value=6.7e-12 Score=125.56 Aligned_cols=58 Identities=31% Similarity=0.412 Sum_probs=39.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhh
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~-~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~ 99 (374)
.+|+|||+||||||||+|.|+|.... ++++|++|.+...+.+.+.+.. +.++|++|+.
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~-----------------~~liDT~G~~ 82 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYD-----------------FNLIDTGGID 82 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSC-----------------CEEECCCC--
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCce-----------------EEEEECCCCC
Confidence 46999999999999999999998765 5899999999988888776644 7899999984
No 162
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.07 E-value=1.9e-10 Score=97.62 Aligned_cols=46 Identities=22% Similarity=0.278 Sum_probs=31.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCC
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD 70 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g 70 (374)
.+|+++|++|||||||++.|++........|..+.......+.+++
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINE 49 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETT
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECC
Confidence 5699999999999999999998754333334333333344455544
No 163
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.07 E-value=2.5e-10 Score=97.15 Aligned_cols=82 Identities=24% Similarity=0.285 Sum_probs=46.7
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhcc
Q 017295 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (374)
Q Consensus 22 ~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~~ 101 (374)
+...+|+++|++|||||||++.|++.... .. ..|.......+.+++. .+.++|++|....
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~--~~t~~~~~~~~~~~~~-----------------~~~~~Dt~G~~~~ 64 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVV-TT--IPTIGFNVETVTYKNL-----------------KFQVWDLGGLTSI 64 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCC-CC--CCCSSEEEEEEEETTE-----------------EEEEEEECCCGGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-Cc--CCcCccceEEEEECCE-----------------EEEEEECCCChhh
Confidence 34567999999999999999999876431 11 1122233334444432 2677788775322
Q ss_pred ccCCCCCC-CCCceeEecCCCCC
Q 017295 102 AHEGQGAF-EDPDIIHVDDSVDP 123 (374)
Q Consensus 102 ~~~~~~~~-~~~~il~l~~~~dP 123 (374)
.......+ ..+.++.+.+..+|
T Consensus 65 ~~~~~~~~~~~d~ii~v~d~~~~ 87 (171)
T 1upt_A 65 RPYWRCYYSNTDAVIYVVDSCDR 87 (171)
T ss_dssp GGGGGGGCTTCSEEEEEEETTCC
T ss_pred hHHHHHHhccCCEEEEEEECCCH
Confidence 11110012 23556666776655
No 164
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.06 E-value=2e-10 Score=97.41 Aligned_cols=48 Identities=8% Similarity=0.096 Sum_probs=32.4
Q ss_pred cCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcC
Q 017295 202 AKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLAD 252 (374)
Q Consensus 202 ~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~ 252 (374)
..|+++|+||+|.. .......+.++++.... +.+++++||+.+.++.+
T Consensus 111 ~~~iilv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~g~gi~~ 158 (170)
T 1r2q_A 111 NIVIALSGNKADLA--NKRAVDFQEAQSYADDN-SLLFMETSAKTSMNVNE 158 (170)
T ss_dssp TCEEEEEEECGGGG--GGCCSCHHHHHHHHHHT-TCEEEECCTTTCTTHHH
T ss_pred CCcEEEEEECccCc--cccccCHHHHHHHHHHc-CCeEEEEeCCCCCCHHH
Confidence 57999999999742 21222345566655444 66899999999876543
No 165
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.06 E-value=4.5e-11 Score=106.63 Aligned_cols=50 Identities=12% Similarity=0.098 Sum_probs=34.5
Q ss_pred ccCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCC
Q 017295 201 TAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADM 253 (374)
Q Consensus 201 ~~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l 253 (374)
...|+++|+||+|.. .......+.++++.... +.+++++||+.+.++.++
T Consensus 140 ~~~piilV~NK~Dl~--~~~~v~~~~~~~~~~~~-~~~~~~~Sa~~g~gi~~l 189 (217)
T 2f7s_A 140 ENPDIVLIGNKADLP--DQREVNERQARELADKY-GIPYFETSAATGQNVEKA 189 (217)
T ss_dssp TCCEEEEEEECTTCG--GGCCSCHHHHHHHHHHT-TCCEEEEBTTTTBTHHHH
T ss_pred CCCCEEEEEECCccc--cccccCHHHHHHHHHHC-CCcEEEEECCCCCCHHHH
Confidence 368999999999742 21222345566666544 568999999998877644
No 166
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.06 E-value=1.7e-10 Score=100.11 Aligned_cols=81 Identities=23% Similarity=0.280 Sum_probs=47.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhccc
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~~~ 102 (374)
...+|+++|++|||||||++.+++.. ...+. .|...+...+.+++. .++++|++|.....
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~-~t~~~~~~~~~~~~~-----------------~~~~~Dt~G~~~~~ 76 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED--VDTIS-PTLGFNIKTLEHRGF-----------------KLNIWDVGGQKSLR 76 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC--CSSCC-CCSSEEEEEEEETTE-----------------EEEEEEECCSHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC--CCccc-ccCccceEEEEECCE-----------------EEEEEECCCCHhHH
Confidence 45779999999999999999999875 22222 133333445555432 26778888763211
Q ss_pred cCCCCCC-CCCceeEecCCCCC
Q 017295 103 HEGQGAF-EDPDIIHVDDSVDP 123 (374)
Q Consensus 103 ~~~~~~~-~~~~il~l~~~~dP 123 (374)
......+ ..+.++.+.+..+|
T Consensus 77 ~~~~~~~~~~d~ii~v~d~~~~ 98 (186)
T 1ksh_A 77 SYWRNYFESTDGLIWVVDSADR 98 (186)
T ss_dssp TTGGGGCTTCSEEEEEEETTCG
T ss_pred HHHHHHhcCCCEEEEEEECcCH
Confidence 1100011 23456666675555
No 167
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.06 E-value=3.3e-10 Score=98.89 Aligned_cols=49 Identities=12% Similarity=0.036 Sum_probs=33.7
Q ss_pred cCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeH-HHHHHhcCC
Q 017295 202 AKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSC-ALERNLADM 253 (374)
Q Consensus 202 ~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa-~~e~~l~~l 253 (374)
..|+++|+||+|.. .......+..+++.... +.+++.+|| +.+.++.++
T Consensus 127 ~~piilv~nK~Dl~--~~~~v~~~~~~~~~~~~-~~~~~e~Sa~~~g~gv~~l 176 (187)
T 3c5c_A 127 SIPALLLGNKLDMA--QYRQVTKAEGVALAGRF-GCLFFEVSACLDFEHVQHV 176 (187)
T ss_dssp CCCEEEEEECGGGG--GGCSSCHHHHHHHHHHH-TCEEEECCSSSCSHHHHHH
T ss_pred CCCEEEEEECcchh--hcCccCHHHHHHHHHHc-CCcEEEEeecCccccHHHH
Confidence 68999999999742 21222345566666555 568999999 788776544
No 168
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.06 E-value=4e-10 Score=98.58 Aligned_cols=27 Identities=30% Similarity=0.507 Sum_probs=22.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCC
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLAIP 50 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~~~ 50 (374)
..+|+|+|.+|||||||++.|++....
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~~~~ 43 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPAQSS 43 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCCC--
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCc
Confidence 356999999999999999999987543
No 169
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.05 E-value=1.9e-10 Score=101.69 Aligned_cols=49 Identities=10% Similarity=0.037 Sum_probs=34.3
Q ss_pred cCCEEEEEcCCCccccccccccHHHHHHHHHhhCCC-eEEEeeHHHHHHhcCC
Q 017295 202 AKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGE-QIIPFSCALERNLADM 253 (374)
Q Consensus 202 ~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~-~~i~vSa~~e~~l~~l 253 (374)
..|+++|+||+|.. .......+.++++.... +. +++.+||+.+.++.++
T Consensus 134 ~~piilv~NK~Dl~--~~~~v~~~~~~~~~~~~-~~~~~~~~SA~~g~gi~~l 183 (201)
T 2hup_A 134 NIVQLLIGNKSDLS--ELREVSLAEAQSLAEHY-DILCAIETSAKDSSNVEEA 183 (201)
T ss_dssp TCEEEEEEECTTCG--GGCCSCHHHHHHHHHHT-TCSEEEECBTTTTBSHHHH
T ss_pred CCCEEEEEECCccc--cccccCHHHHHHHHHHc-CCCEEEEEeCCCCCCHHHH
Confidence 58999999999743 21223345666666554 55 8999999998776544
No 170
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.05 E-value=4.2e-10 Score=98.94 Aligned_cols=48 Identities=21% Similarity=0.281 Sum_probs=34.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCcccCCceeEEEeCCcc
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDER 72 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~~-s~~pftT~~p~~G~i~~~g~~ 72 (374)
.+|+|||.+|+|||||+|.++|..... +++|.++.+.....+.++|..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGES 55 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEE
T ss_pred EEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeE
Confidence 579999999999999999999864433 556665555455666777654
No 171
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.04 E-value=4e-10 Score=98.66 Aligned_cols=47 Identities=11% Similarity=0.066 Sum_probs=33.1
Q ss_pred cCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhc
Q 017295 202 AKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLA 251 (374)
Q Consensus 202 ~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~ 251 (374)
..|+++|+||+|.. .......+.++++.... +.+++++||+.+.++.
T Consensus 128 ~~piiiv~NK~Dl~--~~~~v~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~ 174 (192)
T 2fg5_A 128 NIVMAIAGNKCDLS--DIREVPLKDAKEYAESI-GAIVVETSAKNAINIE 174 (192)
T ss_dssp TCEEEEEEECGGGG--GGCCSCHHHHHHHHHTT-TCEEEECBTTTTBSHH
T ss_pred CCcEEEEEECcccc--cccccCHHHHHHHHHHc-CCEEEEEeCCCCcCHH
Confidence 68999999999742 22223455667766554 5789999999886654
No 172
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.04 E-value=2.6e-10 Score=96.02 Aligned_cols=48 Identities=15% Similarity=0.134 Sum_probs=33.0
Q ss_pred cCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCC
Q 017295 202 AKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADM 253 (374)
Q Consensus 202 ~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l 253 (374)
..|+++|+||+|... .....+.++++.... +.+++++||+.+.++.++
T Consensus 108 ~~p~iiv~nK~Dl~~---~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l 155 (166)
T 2ce2_X 108 DVPMVLVGNKSDLAA---RTVESRQAQDLARSY-GIPYIETSAKTRQGVEDA 155 (166)
T ss_dssp CCCEEEEEECTTCSC---CCSCHHHHHHHHHHH-TCCEEEECTTTCTTHHHH
T ss_pred CCcEEEEEEchhhhh---cccCHHHHHHHHHHc-CCeEEEecCCCCCCHHHH
Confidence 689999999997422 123344555555544 568999999998776543
No 173
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.03 E-value=7e-10 Score=95.71 Aligned_cols=83 Identities=20% Similarity=0.185 Sum_probs=48.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhccccC
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~~~~~ 104 (374)
.+|+++|++|||||||++.+++... ...|+.|+.......+.+++..+ .+.++|++|.......
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~---------------~~~i~Dt~G~~~~~~~ 69 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPV---------------NLGLWDTAGQEDYDRL 69 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSC-CSSCCCCSCCEEEEEEEETTEEE---------------EEEEECCCCSGGGTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCC-CCCcCCcccceeEEEEEECCEEE---------------EEEEEECCCCHhHHHH
Confidence 5799999999999999999997643 34455555443334455554321 2567788876432111
Q ss_pred CCCCC-CCCceeEecCCCCC
Q 017295 105 GQGAF-EDPDIIHVDDSVDP 123 (374)
Q Consensus 105 ~~~~~-~~~~il~l~~~~dP 123 (374)
....+ ..+.++.+.+..++
T Consensus 70 ~~~~~~~~d~~i~v~d~~~~ 89 (186)
T 1mh1_A 70 RPLSYPQTDVSLICFSLVSP 89 (186)
T ss_dssp GGGGCTTCSEEEEEEETTCH
T ss_pred HHHhccCCcEEEEEEECCCh
Confidence 10012 23455666664444
No 174
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.03 E-value=2.1e-10 Score=98.74 Aligned_cols=34 Identities=24% Similarity=0.261 Sum_probs=23.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcc
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCT 58 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT 58 (374)
..+|+++|.+|+|||||++.+++... ..+|+.|+
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~~-~~~~~~t~ 41 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTV 41 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSCC-C-------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCee
Confidence 46799999999999999999998642 23444443
No 175
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.02 E-value=3.2e-10 Score=100.46 Aligned_cols=85 Identities=21% Similarity=0.211 Sum_probs=49.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhccc
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~~~ 102 (374)
...+|+++|.+|||||||++.+++... ..+++.||.+.....+.+++..+ .+.++|++|.-...
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~---------------~l~i~Dt~G~~~~~ 92 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPV---------------NLGLWDTAGLEDYD 92 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCC-CC-CCCCSEEEEEEEEECC-CEE---------------EEEEEEECCSGGGT
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCC-CCCcCCeecceeEEEEEECCEEE---------------EEEEEECCCchhhH
Confidence 346799999999999999999997532 35666666555555555555331 24578888763221
Q ss_pred cCCCCCC-CCCceeEecCCCCC
Q 017295 103 HEGQGAF-EDPDIIHVDDSVDP 123 (374)
Q Consensus 103 ~~~~~~~-~~~~il~l~~~~dP 123 (374)
......+ ..+.++.+.+..++
T Consensus 93 ~~~~~~~~~~d~~i~v~d~~~~ 114 (204)
T 4gzl_A 93 RLRPLSYPQTDVFLICFSLVSP 114 (204)
T ss_dssp TTGGGGCTTCSEEEEEEETTCH
T ss_pred HHHHHHhccCCEEEEEEECCCH
Confidence 1110011 23455666664444
No 176
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.02 E-value=7.4e-10 Score=98.27 Aligned_cols=84 Identities=15% Similarity=0.120 Sum_probs=51.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhcccc
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~~~~ 103 (374)
..+|+++|.+|+|||||++.+++... ..+|+.|+.......+.+++.. ..+.++|++|......
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~~ 72 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAVDGQI---------------VNLGLWDTAGQEDYSR 72 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCSSCCCEEEEEECSSCE---------------EEEEEECCCCCCCCCC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CccCCCccceeEEEEEEECCEE---------------EEEEEEECCCcHHHHH
Confidence 36799999999999999999998643 3566666655555556555532 1267788887632211
Q ss_pred CCCCCC-CCCceeEecCCCCC
Q 017295 104 EGQGAF-EDPDIIHVDDSVDP 123 (374)
Q Consensus 104 ~~~~~~-~~~~il~l~~~~dP 123 (374)
.....+ ..+.++.+.+..+|
T Consensus 73 ~~~~~~~~~d~~ilv~d~~~~ 93 (212)
T 2j0v_A 73 LRPLSYRGADIFVLAFSLISK 93 (212)
T ss_dssp --CGGGTTCSEEEEEEETTCH
T ss_pred HHHhhccCCCEEEEEEECCCH
Confidence 111012 23455666664444
No 177
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.02 E-value=1.6e-09 Score=95.55 Aligned_cols=58 Identities=28% Similarity=0.339 Sum_probs=39.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhh
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl 98 (374)
.+|+++|.+|||||||++.+++.... ..|..|+.......+.+++..+ .+.++|++|.
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~---------------~l~i~Dt~G~ 83 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQFP-EVYVPTVFENYIADIEVDGKQV---------------ELALWDTAGQ 83 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCC-SSCCCSSCCCCEEEEEETTEEE---------------EEEEECCCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCC-cccCCcccceEEEEEEECCEEE---------------EEEEEECCCc
Confidence 56999999999999999999987543 3343344333344555555321 2567788775
No 178
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.02 E-value=4.8e-10 Score=97.79 Aligned_cols=58 Identities=22% Similarity=0.328 Sum_probs=39.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhh
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl 98 (374)
...+|+++|.+|||||||++.|++.......+. +|.......+.+++.. +.++|++|.
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~-~t~~~~~~~~~~~~~~-----------------~~l~Dt~G~ 77 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNIL-PTIGFSIEKFKSSSLS-----------------FTVFDMSGQ 77 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCC-CCSSEEEEEEECSSCE-----------------EEEEEECCS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcC-CccceeEEEEEECCEE-----------------EEEEECCCC
Confidence 346799999999999999999998863233332 3444555556555432 677777774
No 179
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.02 E-value=1e-10 Score=101.06 Aligned_cols=26 Identities=35% Similarity=0.482 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCC
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKLA 48 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~~ 48 (374)
...+|+++|++|||||||++.+++..
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~ 42 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGE 42 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCC
Confidence 45789999999999999999999654
No 180
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.01 E-value=1.8e-09 Score=94.29 Aligned_cols=83 Identities=20% Similarity=0.250 Sum_probs=51.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhccccC
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~~~~~ 104 (374)
.+|+++|++|+|||||++.+++... ..+|+.|+.......+.+++..+ .+.++|++|.......
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~---------------~~~i~D~~G~~~~~~~ 82 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYANDAF-PEEYVPTVFDHYAVSVTVGGKQY---------------LLGLYDTAGQEDYDRL 82 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSC-CCSCCCSSCCCEEEEEESSSCEE---------------EEEEECCCCSSSSTTT
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcccceeEEEEEECCEEE---------------EEEEEECCCCcchhHH
Confidence 5799999999999999999998742 35667666555555566655321 2567788775322111
Q ss_pred CCCCC-CCCceeEecCCCCC
Q 017295 105 GQGAF-EDPDIIHVDDSVDP 123 (374)
Q Consensus 105 ~~~~~-~~~~il~l~~~~dP 123 (374)
....+ ..+.++.+.+..+|
T Consensus 83 ~~~~~~~~d~~i~v~d~~~~ 102 (194)
T 2atx_A 83 RPLSYPMTDVFLICFSVVNP 102 (194)
T ss_dssp GGGGCTTCSEEEEEEETTCH
T ss_pred HHHhcCCCCEEEEEEECCCH
Confidence 00012 23455666665444
No 181
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.00 E-value=1.6e-11 Score=122.77 Aligned_cols=142 Identities=14% Similarity=0.110 Sum_probs=87.5
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCcee-E-EEeCCcchhhhhhhccCCCC----ccccchHhhH
Q 017295 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEA-R-VNIPDERFEWLCQLFKPKSA----VPAFLEIHDI 95 (374)
Q Consensus 22 ~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G-~-i~~~g~~~~~l~~~~~~~~~----~~~~~~v~D~ 95 (374)
..|..++|+|+||||||||+|+|+|. ..|+.| . |.+++.. .....+.||.. ....+++.++
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl-----------~~p~~G~~pI~vdg~~--~~~i~~vpq~~~l~~~~~~~tv~en 202 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSY-----------ALKFNAYQPLYINLDP--QQPIFTVPGCISATPISDILDAQLP 202 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHT-----------THHHHCCCCEEEECCT--TSCSSSCSSCCEEEECCSCCCTTCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCc-----------ccccCCceeEEEcCCc--cCCeeeeccchhhcccccccchhhh
Confidence 45778999999999999999999999 779999 8 9988732 11124556654 1223455555
Q ss_pred hhhhccccCCC----C------CCCCCc---eeEecC--------------CCCCchhH----HHHHH-HHHhhcHHHHH
Q 017295 96 AGLVRGAHEGQ----G------AFEDPD---IIHVDD--------------SVDPVRDL----EVISA-ELRLKDIEFME 143 (374)
Q Consensus 96 ~gl~~~~~~~~----~------~~~~~~---il~l~~--------------~~dP~~~l----~ilde-~l~~~D~~~~~ 143 (374)
. +......+. . .+.-.. ...+++ +.+| ++ +++|| |++++|.. ..
T Consensus 203 i-~~~~~~~~~~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p--~i~~sGLlLDEpPts~LD~~-~~ 278 (460)
T 2npi_A 203 T-WGQSLTSGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDP--QVRRSGCIVDTPSISQLDEN-LA 278 (460)
T ss_dssp T-CSCBCBSSCCSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCH--HHHHSCEEEECCCGGGSCSS-CH
T ss_pred h-cccccccCcchHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCc--ccCcceEEEeCCcccccChh-HH
Confidence 4 322211110 0 000000 001111 3467 88 99999 99999988 33
Q ss_pred HHHHHHHHHHHccCc-----cchH------HHHHHHHH-----HHHHHh-CCCceeccC
Q 017295 144 RRIEDVEKSMKRSND-----KQLK------IEHELCQR-----VKAWLQ-DGKDVRLGD 185 (374)
Q Consensus 144 ~~~~~i~~~~~~~~~-----H~~~------~~~~~~d~-----v~~~L~-~G~iv~~~~ 185 (374)
.+...+.+ .+.+ |+.. ++..+||+ + .+|+ +|+++ .++
T Consensus 279 ~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~v-i~l~k~G~iv-~g~ 332 (460)
T 2npi_A 279 ELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNI-FFIPKLDGVS-AVD 332 (460)
T ss_dssp HHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGE-EEECCCTTCC-CCC
T ss_pred HHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEE-EEEeCCCcEE-ECC
Confidence 33333332 2333 6554 77789999 8 8888 99988 554
No 182
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.00 E-value=1.8e-10 Score=97.48 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=21.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC
Q 017295 26 KIGIVGLPNVGKSTLFNTLTKLA 48 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Ltg~~ 48 (374)
+|+++|++|+|||||++.+++..
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999998764
No 183
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.99 E-value=3.6e-10 Score=99.52 Aligned_cols=26 Identities=35% Similarity=0.409 Sum_probs=23.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCC
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLAI 49 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~~ 49 (374)
..+|+|+|++|||||||++.|++...
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~~~ 53 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKNEF 53 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHCCC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhCCC
Confidence 36799999999999999999998753
No 184
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.99 E-value=7.7e-12 Score=134.24 Aligned_cols=61 Identities=8% Similarity=0.064 Sum_probs=51.3
Q ss_pred CCCCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHHhCCCce-eccCC
Q 017295 120 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWLQDGKDV-RLGDW 186 (374)
Q Consensus 120 ~~dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L~~G~iv-~~~~~ 186 (374)
+.+| +++++|||++++|+.....+++.+.. .+.+ |++..+..+||++ .+|++|+++ ..++.
T Consensus 564 ~~~P--~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~~l~~~adri-i~L~~G~iv~~~G~~ 630 (986)
T 2iw3_A 564 LRNA--DILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSVFLDNVCEYI-INYEGLKLRKYKGNF 630 (986)
T ss_dssp HTTC--SEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHHHHHHHCSEE-EEEETTEEEEEESCH
T ss_pred hcCC--CEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHHHHHHhCCEE-EEEECCeeecCCCCH
Confidence 4678 99999999999999999998888876 3444 9999999999999 889999986 34543
No 185
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.99 E-value=3.5e-10 Score=98.47 Aligned_cols=81 Identities=22% Similarity=0.318 Sum_probs=48.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhccc
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~~~ 102 (374)
...+|+++|++|||||||++.+++.... ...| |.......+.+++. .+.++|++|.....
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~-----------------~~~~~Dt~G~~~~~ 80 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVV-TTVP--TVGVNLETLQYKNI-----------------SFEVWDLGGQTGVR 80 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCE-EECS--STTCCEEEEEETTE-----------------EEEEEEECCSSSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCC-CcCC--CCceEEEEEEECCE-----------------EEEEEECCCCHhHH
Confidence 4577999999999999999999865321 1112 33334444554432 26788888864322
Q ss_pred cCCCCCC-CCCceeEecCCCCC
Q 017295 103 HEGQGAF-EDPDIIHVDDSVDP 123 (374)
Q Consensus 103 ~~~~~~~-~~~~il~l~~~~dP 123 (374)
......+ ..+.++.+.+..+|
T Consensus 81 ~~~~~~~~~~d~ii~v~d~~~~ 102 (189)
T 2x77_A 81 PYWRCYFSDTDAVIYVVDSTDR 102 (189)
T ss_dssp CCCSSSSTTCCEEEEEEETTCC
T ss_pred HHHHHHhhcCCEEEEEEeCCCH
Confidence 1111122 23556677776665
No 186
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.98 E-value=3e-10 Score=98.84 Aligned_cols=56 Identities=30% Similarity=0.407 Sum_probs=36.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhh
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl 98 (374)
...+|+++|.+|||||||++.|++.... . ...|...+...+.+++.. +.++|++|.
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~--~~~t~~~~~~~~~~~~~~-----------------~~i~Dt~G~ 70 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV-H--TSPTIGSNVEEIVINNTR-----------------FLMWDIGGQ 70 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE-E--EECCSCSSCEEEEETTEE-----------------EEEEECCC-
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-c--CcCCCccceEEEEECCEE-----------------EEEEECCCC
Confidence 3567999999999999999999976432 1 112333444455554422 677787776
No 187
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.97 E-value=2.1e-09 Score=95.26 Aligned_cols=59 Identities=25% Similarity=0.324 Sum_probs=35.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhh
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~ 99 (374)
.+|+++|.+|||||||++.|++.... ..|+.|+.......+.+++.. ..+.++|++|..
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~ 84 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDEFP-EVYVPTVFENYVADIEVDGKQ---------------VELALWDTAGQE 84 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCC--------CCEEEEEEEETTEE---------------EEEEEEECTTCT
T ss_pred cEEEEECcCCCCHHHHHHHHhcCCCC-CcCCCcccceEEEEEEECCEE---------------EEEEEEECCCcH
Confidence 46999999999999999999987542 233333333333334444432 126778888863
No 188
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.96 E-value=2.2e-09 Score=93.11 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=22.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCC
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLA 48 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~ 48 (374)
..+|+++|++|||||||++.|++..
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3579999999999999999999864
No 189
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.96 E-value=7.8e-12 Score=130.91 Aligned_cols=59 Identities=12% Similarity=0.201 Sum_probs=50.7
Q ss_pred hHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHH------hCCCceeccCC
Q 017295 126 DLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWL------QDGKDVRLGDW 186 (374)
Q Consensus 126 ~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L------~~G~iv~~~~~ 186 (374)
+++++|||++++|+.....+++.+.++.+++.+ |++..+ ..||++ .+| ++|+++..++.
T Consensus 566 ~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~i-~~l~~~~g~~~G~i~~~g~~ 635 (670)
T 3ux8_A 566 TLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVI-KTADYI-IDLGPEGGDRGGQIVAVGTP 635 (670)
T ss_dssp EEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEE-EEEESSSGGGCCEEEEEECH
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH-HhCCEE-EEecCCcCCCCCEEEEecCH
Confidence 699999999999999999999999988766655 999876 569999 888 89999987753
No 190
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.96 E-value=8.7e-11 Score=102.09 Aligned_cols=25 Identities=36% Similarity=0.608 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcC
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
...+|+++|++|||||||++.|++.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 3467999999999999999999987
No 191
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.96 E-value=1.4e-09 Score=96.97 Aligned_cols=60 Identities=23% Similarity=0.329 Sum_probs=34.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhh
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~ 99 (374)
..+|+++|.+|||||||++.|++... ...|+.|+.......+.+++.. ..+.++|++|..
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~l~l~Dt~G~~ 93 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADGAF-PESYTPTVFERYMVNLQVKGKP---------------VHLHIWDTAGQD 93 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC--------CCCCCEEEEEEEEETTEE---------------EEEEEEEC----
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCccceeEEEEEEECCEE---------------EEEEEEECCCch
Confidence 35799999999999999999998643 2344445443334445555432 126778888753
No 192
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.94 E-value=4e-10 Score=95.75 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=22.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCC
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLAI 49 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~~ 49 (374)
..+|+++|++|||||||+|.|++...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~ 28 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTF 28 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCC
Confidence 46799999999999999999998643
No 193
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.94 E-value=3.6e-10 Score=97.91 Aligned_cols=27 Identities=33% Similarity=0.508 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCC
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKLAI 49 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~~~ 49 (374)
...+|+++|.+|||||||++.|++...
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~ 46 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEV 46 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSC
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC
Confidence 346799999999999999999998754
No 194
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.94 E-value=4.4e-09 Score=93.92 Aligned_cols=86 Identities=19% Similarity=0.240 Sum_probs=46.0
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhcc
Q 017295 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (374)
Q Consensus 22 ~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~~ 101 (374)
....+|+|+|.+|||||||++.+++... ..+|+.|+.......+.+++.. -.+.++|++|.-..
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~ 88 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCY-PETYVPTVFENYTACLETEEQR---------------VELSLWDTSGSPYY 88 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEEEEEC--CE---------------EEEEEEEECCSGGG
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCC-CCCcCCeeeeeEEEEEEECCEE---------------EEEEEEECCCCHhH
Confidence 3456799999999999999999998743 2333333322222233333322 12567777775321
Q ss_pred ccCCCCCC-CCCceeEecCCCCC
Q 017295 102 AHEGQGAF-EDPDIIHVDDSVDP 123 (374)
Q Consensus 102 ~~~~~~~~-~~~~il~l~~~~dP 123 (374)
.......+ ..+.++.+.+..++
T Consensus 89 ~~~~~~~~~~~d~~i~v~d~~~~ 111 (214)
T 3q3j_B 89 DNVRPLCYSDSDAVLLCFDISRP 111 (214)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCT
T ss_pred HHHHHHHcCCCeEEEEEEECcCH
Confidence 11100012 23556667776555
No 195
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.93 E-value=1.2e-09 Score=95.32 Aligned_cols=26 Identities=27% Similarity=0.512 Sum_probs=23.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCC
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLAI 49 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~~ 49 (374)
..+|+++|.+|||||||++.|++...
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~~ 47 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQF 47 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCCC
Confidence 46799999999999999999998754
No 196
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.92 E-value=1.9e-10 Score=100.96 Aligned_cols=25 Identities=32% Similarity=0.491 Sum_probs=22.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCC
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLA 48 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~ 48 (374)
..+|+++|++|||||||++.+++..
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~~ 53 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLGE 53 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHhCC
Confidence 4679999999999999999998763
No 197
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.92 E-value=1e-09 Score=110.61 Aligned_cols=80 Identities=20% Similarity=0.260 Sum_probs=53.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhcccc
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~~~~ 103 (374)
..+|+|||.+|+|||||++.|++... +. .++|+.++.+.+.+.+.. +.++|++|......
T Consensus 322 ~~ki~lvG~~nvGKSsLl~~l~~~~~-~~--~~~T~~~~~~~~~~~~~~-----------------~~l~Dt~G~~~~~~ 381 (497)
T 3lvq_E 322 EMRILMLGLDAAGKTTILYKLKLGQS-VT--TIPTVGFNVETVTYKNVK-----------------FNVWDVGGQDKIRP 381 (497)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC-CC--CCCCSSEEEEEEESSSCE-----------------EEEEEECCCGGGSG
T ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCC-CC--cCCccceeEEEEEeCCEE-----------------EEEEECCCcHHHHH
Confidence 35799999999999999999998863 23 345777888877766533 67788888532211
Q ss_pred CCCCCC-CCCceeEecCCCCC
Q 017295 104 EGQGAF-EDPDIIHVDDSVDP 123 (374)
Q Consensus 104 ~~~~~~-~~~~il~l~~~~dP 123 (374)
.....+ ..+.++++.|+.++
T Consensus 382 ~~~~~~~~ad~~i~V~D~~~~ 402 (497)
T 3lvq_E 382 LWRHYYTGTQGLIFVVDCADR 402 (497)
T ss_dssp GGGGGGTTCCEEEEEEETTCG
T ss_pred HHHHHhccCCEEEEEEECcch
Confidence 110012 23566777776665
No 198
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.92 E-value=3.6e-09 Score=93.97 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=23.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCC
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLAI 49 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~~ 49 (374)
..+|+++|++|||||||++.|++...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~~~ 53 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKDCF 53 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45799999999999999999998743
No 199
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.92 E-value=8.3e-10 Score=104.64 Aligned_cols=60 Identities=17% Similarity=0.125 Sum_probs=47.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhh
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~~-~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~ 99 (374)
..+|+|+|.+|||||||++.+++... ..+++|++|+.+..+.+.+++. -.+.++|++|..
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~----------------~~l~i~Dt~G~~ 63 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGN----------------MTLNLWDCGGQD 63 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTT----------------EEEEEEEECCSH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCc----------------eEEEEEECCCcH
Confidence 46799999999999999999988744 3478999999999998877441 126777777753
No 200
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.92 E-value=1.9e-10 Score=113.71 Aligned_cols=60 Identities=23% Similarity=0.293 Sum_probs=41.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhc
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~-~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~ 100 (374)
.+|+|+|..|+|||||+|.|++... .++++|++|.++....+.+.+.. .+.++|++|+..
T Consensus 35 ~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~----------------~l~liDTpG~~d 95 (423)
T 3qq5_A 35 RYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG----------------PVTLVDTPGLDD 95 (423)
T ss_dssp EEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE----------------EEEEEECSSTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC----------------eEEEEECcCCCc
Confidence 5699999999999999999999886 45899999999999988887531 278899999854
No 201
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.90 E-value=8.9e-10 Score=98.19 Aligned_cols=49 Identities=10% Similarity=0.069 Sum_probs=31.5
Q ss_pred cCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCC
Q 017295 202 AKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADM 253 (374)
Q Consensus 202 ~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l 253 (374)
..|+++|+||+|.. .......+.+.++... .+.+++.+||+.+.++.++
T Consensus 117 ~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~g~gv~~l 165 (218)
T 4djt_A 117 EAPIVVCANKIDIK--NRQKISKKLVMEVLKG-KNYEYFEISAKTAHNFGLP 165 (218)
T ss_dssp SSCEEEEEECTTCC------CCHHHHHHHTTT-CCCEEEEEBTTTTBTTTHH
T ss_pred CCCEEEEEECCCCc--cccccCHHHHHHHHHH-cCCcEEEEecCCCCCHHHH
Confidence 48999999999742 2112223344444433 3678999999998887644
No 202
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.89 E-value=2.3e-09 Score=110.76 Aligned_cols=61 Identities=21% Similarity=0.173 Sum_probs=44.8
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHcCCCCCCC-------------------------------CCCcccCCceeEEEeCC
Q 017295 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAEN-------------------------------FPFCTIEPNEARVNIPD 70 (374)
Q Consensus 22 ~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~-------------------------------~pftT~~p~~G~i~~~g 70 (374)
....+|+|+|.+|+|||||++.|++....+.+ .+++|++.....+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 34567999999999999999999987544433 15677777666666554
Q ss_pred cchhhhhhhccCCCCccccchHhhHhhhh
Q 017295 71 ERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (374)
Q Consensus 71 ~~~~~l~~~~~~~~~~~~~~~v~D~~gl~ 99 (374)
.. +.++|+||..
T Consensus 245 ~~-----------------~~iiDTPG~e 256 (611)
T 3izq_1 245 AN-----------------FTIVDAPGHR 256 (611)
T ss_dssp CE-----------------EEEEECCSSS
T ss_pred ce-----------------EEEEECCCCc
Confidence 32 6888998863
No 203
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.89 E-value=2.2e-09 Score=105.95 Aligned_cols=34 Identities=29% Similarity=0.441 Sum_probs=28.0
Q ss_pred cccccccccCCceEEEEcCCCCcHHHHHHHHHcCCC
Q 017295 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAI 49 (374)
Q Consensus 14 ~~~vL~~i~~~~~vgLvG~nGaGKSTL~n~Ltg~~~ 49 (374)
.+.+++++++ .|+|||+||||||||+|+|+|...
T Consensus 23 ~~~vl~~vsf--~I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 23 RKSVKRGFEF--TLMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp TTTCC-CCCE--EEEEECCTTSSHHHHHHHHTTCCC
T ss_pred CEEEecCCCE--EEEEECCCCCcHHHHHHHHhCCCC
Confidence 4567887775 469999999999999999999854
No 204
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.88 E-value=4.4e-09 Score=91.41 Aligned_cols=48 Identities=15% Similarity=0.185 Sum_probs=35.2
Q ss_pred ccCCEEEEEcCCCccccccccccHHHHHHHHHhhCCC-eEEEeeHHHHHHhcCC
Q 017295 201 TAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGE-QIIPFSCALERNLADM 253 (374)
Q Consensus 201 ~~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~-~~i~vSa~~e~~l~~l 253 (374)
...|+++|+||+|... ....+.+++++... +. +++.+||+.+.++.++
T Consensus 134 ~~~piilv~NK~Dl~~----~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gv~~l 182 (198)
T 3t1o_A 134 DDVPIVIQVNKRDLPD----ALPVEMVRAVVDPE-GKFPVLEAVATEGKGVFET 182 (198)
T ss_dssp TSSCEEEEEECTTSTT----CCCHHHHHHHHCTT-CCSCEEECBGGGTBTHHHH
T ss_pred CCCCEEEEEEchhccc----ccCHHHHHHHHHhc-CCceEEEEecCCCcCHHHH
Confidence 4689999999997421 23456677776554 45 8999999999887644
No 205
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.88 E-value=4.6e-09 Score=99.45 Aligned_cols=86 Identities=21% Similarity=0.205 Sum_probs=53.0
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhcc
Q 017295 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (374)
Q Consensus 22 ~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~~ 101 (374)
+...+|+++|.+|+|||||++.+++... ...++.||.......+.+++..+ .+.++|++|....
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~---------------~~~l~Dt~G~~~~ 216 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPV---------------NLGLWDTAGLEDY 216 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCC-CCSCCCCSEEEEEEEEEETTEEE---------------EEEEEEECCCGGG
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCC-CcccCCcccceeEEEEEECCEEE---------------EEEEEeCCCchhh
Confidence 4457799999999999999999997633 45666666555555555555431 2557888876432
Q ss_pred ccCCCCCC-CCCceeEecCCCCC
Q 017295 102 AHEGQGAF-EDPDIIHVDDSVDP 123 (374)
Q Consensus 102 ~~~~~~~~-~~~~il~l~~~~dP 123 (374)
.......+ ..+.++.+.+..++
T Consensus 217 ~~~~~~~~~~~d~~i~v~d~~~~ 239 (332)
T 2wkq_A 217 DRLRPLSYPQTDVFLICFSLVSP 239 (332)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCH
T ss_pred hHHHHHhccCCCEEEEEEeCCCH
Confidence 11111112 23456666665544
No 206
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.87 E-value=1.1e-09 Score=96.87 Aligned_cols=44 Identities=27% Similarity=0.348 Sum_probs=27.2
Q ss_pred ccccc--ccCCceEEEEcCCCCcHHHHHHHHHcCC--CCCCCCCCccc
Q 017295 16 PILGR--FSSHLKIGIVGLPNVGKSTLFNTLTKLA--IPAENFPFCTI 59 (374)
Q Consensus 16 ~vL~~--i~~~~~vgLvG~nGaGKSTL~n~Ltg~~--~~~s~~pftT~ 59 (374)
.+|++ +..+.+++|+|+||||||||+|+|+|.. ..+++.+++|.
T Consensus 16 ~~l~~~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~ 63 (210)
T 1pui_A 16 PDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQ 63 (210)
T ss_dssp SSGGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------C
T ss_pred CCHhHCCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccce
Confidence 34544 4456789999999999999999999985 23355666654
No 207
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.87 E-value=8.6e-11 Score=101.78 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=21.5
Q ss_pred ccCCceEEEEcCCCCcHHHHHHHHH
Q 017295 21 FSSHLKIGIVGLPNVGKSTLFNTLT 45 (374)
Q Consensus 21 i~~~~~vgLvG~nGaGKSTL~n~Lt 45 (374)
+..|..++|+|+||||||||++++.
T Consensus 6 i~~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHc
Confidence 4567889999999999999999543
No 208
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.38 E-value=2.2e-10 Score=101.15 Aligned_cols=61 Identities=25% Similarity=0.268 Sum_probs=39.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhh
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~ 99 (374)
...+|+++|.+|||||||++.+++... ...++.||.+.....+.+++.. ..++++|++|..
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~ 89 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKP---------------VNLGLWDTAGQE 89 (204)
Confidence 346799999999999999999997532 2344444444333344443322 125688888863
No 209
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.86 E-value=1.8e-09 Score=94.40 Aligned_cols=46 Identities=17% Similarity=0.144 Sum_probs=30.8
Q ss_pred cCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhc
Q 017295 202 AKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLA 251 (374)
Q Consensus 202 ~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~ 251 (374)
..|+++|+||+|... .....+...++.... +.+++++||+.+.++.
T Consensus 114 ~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~ 159 (199)
T 2gf0_A 114 DIPVMLVGNKCDETQ---REVDTREAQAVAQEW-KCAFMETSAKMNYNVK 159 (199)
T ss_dssp GSCEEEEEECTTCSS---CSSCHHHHHHHHHHH-TCEEEECBTTTTBSHH
T ss_pred CCCEEEEEECccCCc---cccCHHHHHHHHHHh-CCeEEEEecCCCCCHH
Confidence 689999999997421 122334455554444 5689999999886654
No 210
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.85 E-value=2.6e-08 Score=91.54 Aligned_cols=60 Identities=18% Similarity=0.140 Sum_probs=48.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCC-cccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhc
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPF-CTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~~~~-s~~pf-tT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~ 100 (374)
..+|+|+|++|||||||+|.|+|..... +..|. +|.....+.+.+.+.+ +.++|+||+..
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-----------------i~iiDTpG~~~ 83 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNRE-----------------IVIIDTPDMFS 83 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEE-----------------EEEEECCGGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCE-----------------EEEEECcCCCC
Confidence 4679999999999999999999987544 34455 7888888888877654 78899999864
No 211
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.84 E-value=8.6e-10 Score=98.68 Aligned_cols=39 Identities=23% Similarity=0.198 Sum_probs=27.7
Q ss_pred CCceEEEEcCCCCcHHHHHHH-HHcCCCC-CCCCCCcccCC
Q 017295 23 SHLKIGIVGLPNVGKSTLFNT-LTKLAIP-AENFPFCTIEP 61 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~-Ltg~~~~-~s~~pftT~~p 61 (374)
...+|+++|.+|||||||++. +.|.... ..+.+++|..+
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~ 54 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP 54 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEE
Confidence 346799999999999999999 6555332 25555555443
No 212
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.83 E-value=1e-09 Score=111.39 Aligned_cols=59 Identities=25% Similarity=0.277 Sum_probs=47.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeC-CcchhhhhhhccCCCCccccchHhhHhhh
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIP-DERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~-g~~~~~l~~~~~~~~~~~~~~~v~D~~gl 98 (374)
...+|+++|.+|+|||||++.|++........|++|.+.....+.++ +. .++++|+||.
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~-----------------~i~~iDTPGh 62 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGE-----------------KITFLDTPGH 62 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSS-----------------CCBCEECSSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCC-----------------EEEEEECCCh
Confidence 34578999999999999999999887666788899988777666553 22 2788999985
No 213
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.82 E-value=1.8e-09 Score=108.63 Aligned_cols=58 Identities=28% Similarity=0.424 Sum_probs=35.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCC-------CCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHh
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLA-------IPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIA 96 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~-------~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~ 96 (374)
..+|+++|.+|+|||||++.|+|.. ......++.|++.....+.+++.. ++++|+|
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~-----------------i~iiDtP 81 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYR-----------------ITLVDAP 81 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEE-----------------EEECCCS
T ss_pred CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEE-----------------EEEEECC
Confidence 4679999999999999999999976 123456677777666666655432 6778888
Q ss_pred hh
Q 017295 97 GL 98 (374)
Q Consensus 97 gl 98 (374)
|.
T Consensus 82 Gh 83 (482)
T 1wb1_A 82 GH 83 (482)
T ss_dssp SH
T ss_pred Ch
Confidence 75
No 214
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=98.81 E-value=4.5e-09 Score=78.73 Aligned_cols=60 Identities=23% Similarity=0.266 Sum_probs=52.0
Q ss_pred ceeeeccCCCCeeeEEecCCCChhHhhhhcchhhhcceEEEEEecchhhhhcCChHHHhhcCcccccCCcceecCCCEEE
Q 017295 284 LIYFFTAGPDEVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVMKFDDLKELGSEPAVKAAGKYKQEGKTYVVQDGDIIF 363 (374)
Q Consensus 284 li~~ft~~~~e~~~~~i~~gsta~~~a~~IHsd~~~~f~~A~v~~~~d~~~~~~~~~~~~~g~~~~~g~dy~~~dgDii~ 363 (374)
-|.+||- + .+...+|+|+|+.|+|..||+++.+.++.|+|. | |+++.+|.+++||+|+
T Consensus 7 ~i~v~tP--~-G~~~~lp~GaT~~D~A~~Ih~~lg~~~v~AkVN-----------------G--~~v~L~~~L~~gd~Ve 64 (78)
T 3hvz_A 7 EVFVFTP--K-GDVISLPIGSTVIDFAYAIHSAVGNRMIGAKVD-----------------G--RIVPIDYKVKTGEIID 64 (78)
T ss_dssp EEEEECT--T-SCEEEEETTCBHHHHHHHHCHHHHHTEEEEEET-----------------T--EEECTTCBCCTTCBEE
T ss_pred eEEEECC--C-CCEEEecCCCCHHHHHHHhhhhhhcceEEEEEC-----------------C--EEcCCCcccCCCCEEE
Confidence 3566762 3 377889999999999999999999999999974 4 7899999999999999
Q ss_pred EE
Q 017295 364 FK 365 (374)
Q Consensus 364 ~~ 365 (374)
|.
T Consensus 65 Ii 66 (78)
T 3hvz_A 65 VL 66 (78)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 215
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.81 E-value=6.2e-10 Score=106.61 Aligned_cols=55 Identities=29% Similarity=0.425 Sum_probs=36.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhh
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl 98 (374)
..+|+|+|.+|+|||||++.|++... +..+| |+......+...+. .++++|++|.
T Consensus 165 ~~kI~ivG~~~vGKSsLl~~l~~~~~-~~~~p--T~~~~~~~~~~~~~-----------------~l~i~Dt~G~ 219 (329)
T 3o47_A 165 EMRILMVGLDAAGKTTILYKLKLGEI-VTTIP--TIGFNVETVEYKNI-----------------SFTVWDVGGQ 219 (329)
T ss_dssp SEEEEEEESTTSSHHHHHHHTCSSCC-EEEEE--ETTEEEEEEEETTE-----------------EEEEEECC--
T ss_pred cceEEEECCCCccHHHHHHHHhCCCC-CCccc--ccceEEEEEecCcE-----------------EEEEEECCCC
Confidence 35799999999999999999998643 22333 44444444444332 2677888874
No 216
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=98.80 E-value=6.6e-09 Score=93.46 Aligned_cols=49 Identities=12% Similarity=0.066 Sum_probs=35.2
Q ss_pred cCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCC
Q 017295 202 AKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADM 253 (374)
Q Consensus 202 ~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l 253 (374)
..|+|+|.||+|.. ....-..+..+++...+ +.+++.+||+++.++.++
T Consensus 118 ~~piilVgNK~Dl~--~~r~V~~~e~~~~a~~~-~~~~~e~SAktg~nV~e~ 166 (216)
T 4dkx_A 118 DVIIMLVGNKTDLA--DKRQVSIEEGERKAKEL-NVMFIETSAKAGYNVKQL 166 (216)
T ss_dssp SSEEEEEEECTTCG--GGCCSCHHHHHHHHHHH-TCEEEEEBTTTTBSHHHH
T ss_pred CCeEEEEeeccchH--hcCcccHHHHhhHHHHh-CCeeEEEeCCCCcCHHHH
Confidence 57999999999742 22223455666666665 678999999999887654
No 217
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.79 E-value=2.5e-09 Score=96.20 Aligned_cols=32 Identities=25% Similarity=0.134 Sum_probs=22.3
Q ss_pred cccccccC----CceEEEEcCCCCcHHHHHHHHHcC
Q 017295 16 PILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 16 ~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
.-|+++++ |..++|+||||||||||+++|+|.
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34666665 455999999999999999999998
No 218
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.78 E-value=2.2e-09 Score=108.12 Aligned_cols=54 Identities=9% Similarity=0.108 Sum_probs=33.6
Q ss_pred cCCEEEEEcCCCcccccc--ccccHHHHHHHHHhhC----CCeEEEeeHHHHHHhcCCCh
Q 017295 202 AKPVVYLVNMNEKDYQRK--KNKFLPKIHAWVQEHG----GEQIIPFSCALERNLADMPP 255 (374)
Q Consensus 202 ~kP~i~v~Nk~d~d~~~~--~~~~~~~l~~~~~~~~----~~~~i~vSa~~e~~l~~l~~ 255 (374)
.+|+|+|+||+|....+. .++..+.+.+++.... +.+++++||+.+.++.++..
T Consensus 171 ~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~ 230 (483)
T 3p26_A 171 IHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEY 230 (483)
T ss_dssp CCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSCC
T ss_pred CCcEEEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccccCc
Confidence 368999999997421000 0112334444443221 34789999999999998854
No 219
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.77 E-value=2.3e-09 Score=109.20 Aligned_cols=49 Identities=16% Similarity=0.232 Sum_probs=30.3
Q ss_pred cCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCC
Q 017295 202 AKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADM 253 (374)
Q Consensus 202 ~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l 253 (374)
.+|+|+|+||+|.. .......+.+++.+... +.+++++||+++.++.+|
T Consensus 150 ~~pvilV~NK~Dl~--~~~~v~~~~~~~~~~~~-~~~~~~vSA~~g~gi~eL 198 (535)
T 3dpu_A 150 KSPVIVVMNKIDEN--PSYNIEQKKINERFPAI-ENRFHRISCKNGDGVESI 198 (535)
T ss_dssp SCCEEEEECCTTTC--TTCCCCHHHHHHHCGGG-TTCEEECCC-----CTTH
T ss_pred CCCEEEEEECCCcc--cccccCHHHHHHHHHhc-CCceEEEecCcccCHHHH
Confidence 48999999999742 22222345666665544 567999999999988766
No 220
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.75 E-value=1e-08 Score=101.00 Aligned_cols=31 Identities=32% Similarity=0.275 Sum_probs=26.5
Q ss_pred cccccC----Cce--EEEEcCCCCcHHHHHHHHHcCC
Q 017295 18 LGRFSS----HLK--IGIVGLPNVGKSTLFNTLTKLA 48 (374)
Q Consensus 18 L~~i~~----~~~--vgLvG~nGaGKSTL~n~Ltg~~ 48 (374)
|+++++ |.. +||||+||||||||+|+|+|..
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 666654 556 9999999999999999999984
No 221
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.75 E-value=2.6e-10 Score=103.70 Aligned_cols=44 Identities=23% Similarity=0.281 Sum_probs=34.4
Q ss_pred cc-ccccCCceEEEEcCCCCcHHHHHHHHH--cCCCCCCCCCCcccCCceeEEEeCCc
Q 017295 17 IL-GRFSSHLKIGIVGLPNVGKSTLFNTLT--KLAIPAENFPFCTIEPNEARVNIPDE 71 (374)
Q Consensus 17 vL-~~i~~~~~vgLvG~nGaGKSTL~n~Lt--g~~~~~s~~pftT~~p~~G~i~~~g~ 71 (374)
+| +.+..|..++|+||||||||||+++|+ |. ..+..|.+.+.+.
T Consensus 22 ~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~-----------~~~~~~~~~~~~~ 68 (251)
T 2ehv_A 22 LIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGA-----------EEYGEPGVFVTLE 68 (251)
T ss_dssp GTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHH-----------HHHCCCEEEEESS
T ss_pred HhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH-----------HhCCCeEEEEEcc
Confidence 45 377888899999999999999999999 54 3455666666554
No 222
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.75 E-value=1.3e-09 Score=108.30 Aligned_cols=144 Identities=12% Similarity=0.139 Sum_probs=94.3
Q ss_pred ccccccc---cCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcc---hhhh----------hh
Q 017295 15 RPILGRF---SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER---FEWL----------CQ 78 (374)
Q Consensus 15 ~~vL~~i---~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~---~~~l----------~~ 78 (374)
..+|+++ ..|..++|+|+||||||||+++|+|. .+|+.|.|.+.|++ +..+ ..
T Consensus 145 ~~vld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~-----------~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r 213 (438)
T 2dpy_A 145 VRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARY-----------TRADVIVVGLIGERGREVKDFIENILGPDGRAR 213 (438)
T ss_dssp CHHHHHHSCCBTTCEEEEEECTTSSHHHHHHHHHHH-----------SCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHT
T ss_pred ceEEeeeEEecCCCEEEEECCCCCCHHHHHHHHhcc-----------cCCCeEEEEEeceecHHHHHHHHhhccccccCc
Confidence 4566665 44667999999999999999999999 78999999999983 4321 11
Q ss_pred --hccCCC--CccccchHhhHhhhhccccCCCCCCCCCceeEecC---------------CCCCchhHHHHHHHHHhhcH
Q 017295 79 --LFKPKS--AVPAFLEIHDIAGLVRGAHEGQGAFEDPDIIHVDD---------------SVDPVRDLEVISAELRLKDI 139 (374)
Q Consensus 79 --~~~~~~--~~~~~~~v~D~~gl~~~~~~~~~~~~~~~il~l~~---------------~~dP~~~l~ilde~l~~~D~ 139 (374)
.+.+|. .....+++.++..+....... ....+..+.+ ..+| .+ +.++|+
T Consensus 214 ~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~----~~~~v~~~ld~l~~lS~g~qrvslAl~~p--~~------t~glD~ 281 (438)
T 2dpy_A 214 SVVIAAPADVSPLLRMQGAAYATRIAEDFRD----RGQHVLLIMDSLTRYAMAQREIALAIGEP--PA------TKGYPP 281 (438)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHHHHHHT----TTCEEEEEEECHHHHHHHHHHHHHHTTCC--CC------SSSCCT
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHHHHh----CCCCHHHHHHhHHHHHHHHHHHHHHhCCC--cc------cccCCH
Confidence 355553 244556777766554322111 0122222222 1222 11 667888
Q ss_pred HHHHHHHHHHHHHHH---c-cC-----c-----cchHHHHHHHHHHHHHHhCCCceecc
Q 017295 140 EFMERRIEDVEKSMK---R-SN-----D-----KQLKIEHELCQRVKAWLQDGKDVRLG 184 (374)
Q Consensus 140 ~~~~~~~~~i~~~~~---~-~~-----~-----H~~~~~~~~~d~v~~~L~~G~iv~~~ 184 (374)
.......+.+.+..+ + +. + |++. ..++|++ .+|.+|+++..+
T Consensus 282 ~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v-~~l~dG~Ivl~~ 337 (438)
T 2dpy_A 282 SVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSA-RAILDGHIVLSR 337 (438)
T ss_dssp THHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHH-HHHSSEEEEECH
T ss_pred HHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhceE-EEEeCcEEEEeC
Confidence 888887777776654 2 32 3 9987 6889999 999999988653
No 223
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.74 E-value=8.3e-10 Score=106.58 Aligned_cols=25 Identities=32% Similarity=0.655 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcC
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
.+..|+|+|+||||||||||+|+|.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3567999999999999999999985
No 224
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.73 E-value=1.5e-09 Score=100.67 Aligned_cols=49 Identities=16% Similarity=0.193 Sum_probs=40.7
Q ss_pred ccccccc--CCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCc-eeEEEeCCcchhh
Q 017295 16 PILGRFS--SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN-EARVNIPDERFEW 75 (374)
Q Consensus 16 ~vL~~i~--~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~-~G~i~~~g~~~~~ 75 (374)
.+|++++ .+..++|+||||||||||+++|+|. ++|+ +|.|.+.|.++..
T Consensus 15 ~vl~~i~i~~g~~v~i~Gp~GsGKSTll~~l~g~-----------~~~~~~G~I~~~g~~i~~ 66 (261)
T 2eyu_A 15 DKVLELCHRKMGLILVTGPTGSGKSTTIASMIDY-----------INQTKSYHIITIEDPIEY 66 (261)
T ss_dssp THHHHGGGCSSEEEEEECSTTCSHHHHHHHHHHH-----------HHHHCCCEEEEEESSCCS
T ss_pred HHHHHHhhCCCCEEEEECCCCccHHHHHHHHHHh-----------CCCCCCCEEEEcCCccee
Confidence 4566654 5667999999999999999999999 7887 8999988876543
No 225
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.73 E-value=6.5e-09 Score=103.38 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCC
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKLA 48 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~~ 48 (374)
...+|+++|.+|+|||||++.|++..
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~ 41 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLT 41 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHc
Confidence 34679999999999999999997653
No 226
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.72 E-value=4.6e-09 Score=101.84 Aligned_cols=61 Identities=13% Similarity=0.226 Sum_probs=29.8
Q ss_pred CChhHHHHHHhccccccCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHH
Q 017295 186 WKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERN 249 (374)
Q Consensus 186 ~~~~~~~~l~~~~~~~~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~ 249 (374)
+...+...+..+. ...|+|+|+||+|...........+.+.+.+..+ +.+++.+||+.+.+
T Consensus 160 l~~~d~~~~~~l~--~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~-~i~~~~~Sa~~~~~ 220 (361)
T 2qag_A 160 LKPLDVAFMKAIH--NKVNIVPVIAKADTLTLKERERLKKRILDEIEEH-NIKIYHLPDAESDE 220 (361)
T ss_dssp CCHHHHHHHHHTC--S-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC--CCSCCCC------
T ss_pred cchhHHHHHHHhc--cCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHC-CCCEEeCCCcCCCc
Confidence 4444555555443 4689999999997422111111123444444333 56789999998765
No 227
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.71 E-value=1.9e-09 Score=103.25 Aligned_cols=45 Identities=18% Similarity=0.324 Sum_probs=38.4
Q ss_pred ccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcc
Q 017295 17 ILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72 (374)
Q Consensus 17 vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~ 72 (374)
+++.++. +..++|+|+||||||||+++|+|. ++|+.|.|.++|.+
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~-----------~~~~~g~i~i~~~~ 208 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEF-----------IPKEERIISIEDTE 208 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGG-----------SCTTSCEEEEESSC
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCC-----------CcCCCcEEEECCee
Confidence 4555553 556999999999999999999999 88999999998864
No 228
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.71 E-value=1.9e-10 Score=122.26 Aligned_cols=58 Identities=16% Similarity=0.141 Sum_probs=50.5
Q ss_pred hHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHH------hCCCceeccC
Q 017295 126 DLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWL------QDGKDVRLGD 185 (374)
Q Consensus 126 ~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L------~~G~iv~~~~ 185 (374)
+++++|||+.++|+.....+++.+.++.+.+.+ |++..+ ..||++ .+| ++|+++..++
T Consensus 753 ~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i-~~aDri-i~L~p~~g~~~G~Iv~~g~ 821 (842)
T 2vf7_A 753 TVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVV-AASDWV-LDIGPGAGEDGGRLVAQGT 821 (842)
T ss_dssp EEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEE-EEECSSSGGGCCSEEEEEC
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEE-EEECCCCCCCCCEEEEEcC
Confidence 899999999999999999999999988766665 999988 789999 888 6889887654
No 229
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.71 E-value=4.5e-09 Score=89.93 Aligned_cols=47 Identities=17% Similarity=0.148 Sum_probs=40.4
Q ss_pred ccccccc----cCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcch
Q 017295 15 RPILGRF----SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73 (374)
Q Consensus 15 ~~vL~~i----~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~ 73 (374)
+.+++.+ ..|..++|+|+||||||||+++|+|. + |++|.|.++|.++
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~-----------l-~~~G~V~~~g~~i 70 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQG-----------I-GHQGNVKSPTYTL 70 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHH-----------T-TCCSCCCCCTTTC
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHh-----------C-CCCCeEEECCEee
Confidence 4567776 55677999999999999999999999 7 8999999988765
No 230
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.69 E-value=9.7e-10 Score=102.97 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=23.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCC
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAI 49 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~ 49 (374)
.+|+++|.+|||||||+|+|+|...
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~~~ 51 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred CeEEEEeCCCCCHHHHHHHHHCCCc
Confidence 5799999999999999999999865
No 231
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.68 E-value=4.3e-09 Score=91.40 Aligned_cols=23 Identities=43% Similarity=0.603 Sum_probs=21.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcC
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
.+|+|+|++|||||||++.+++.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999999996
No 232
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.64 E-value=5e-09 Score=100.96 Aligned_cols=144 Identities=16% Similarity=0.150 Sum_probs=85.8
Q ss_pred cccccccc---cCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhh------------
Q 017295 14 ERPILGRF---SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ------------ 78 (374)
Q Consensus 14 ~~~vL~~i---~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~------------ 78 (374)
+..+|+.+ ..|.++||+|+||||||||+++|+|. ..|+.|.+.+.|++......
T Consensus 58 g~~ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~-----------~~~~~g~i~~~G~~~~ev~~~i~~~~~~~~~~ 126 (347)
T 2obl_A 58 GVRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNG-----------ASADIIVLALIGERGREVNEFLALLPQSTLSK 126 (347)
T ss_dssp SCHHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHH-----------SCCSEEEEEEESCCHHHHHHHHTTSCHHHHTT
T ss_pred CCEEEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCEEEEEEecccHHHHHHHHHhhhhhhhhc
Confidence 34566665 34667999999999999999999999 78999999988876322211
Q ss_pred --hccCCCCcc--ccchHhhH-hhhhccccCCCCCCCCCceeEecC---------------CCCCchhHHHHHHHHHhhc
Q 017295 79 --LFKPKSAVP--AFLEIHDI-AGLVRGAHEGQGAFEDPDIIHVDD---------------SVDPVRDLEVISAELRLKD 138 (374)
Q Consensus 79 --~~~~~~~~~--~~~~v~D~-~gl~~~~~~~~~~~~~~~il~l~~---------------~~dP~~~l~ilde~l~~~D 138 (374)
.+..+...+ ..+..... ..+...... ....++.+.+ ..+| .+ +.++|
T Consensus 127 ~v~~~~~~~~~~~~r~~~~~~~~~~ae~~~~-----~~~~vl~~ld~~~~lS~g~r~v~lal~~p--~~------t~Gld 193 (347)
T 2obl_A 127 CVLVVTTSDRPALERMKAAFTATTIAEYFRD-----QGKNVLLMMDSVTRYARAARDVGLASGEP--DV------RGGFP 193 (347)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHHHHHHT-----TTCEEEEEEETHHHHHHHHHHHHHHTTCC--CC------BTTBC
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHHHHh-----ccccHHHHHhhHHHHHHHHHHHHHHcCCC--Cc------ccCCC
Confidence 111111111 11111111 111111000 0012222222 1222 11 46899
Q ss_pred HHHHHHHHHHHHHHHH--ccC-----c-----cchHHHHHHHHHHHHHHhCCCceecc
Q 017295 139 IEFMERRIEDVEKSMK--RSN-----D-----KQLKIEHELCQRVKAWLQDGKDVRLG 184 (374)
Q Consensus 139 ~~~~~~~~~~i~~~~~--~~~-----~-----H~~~~~~~~~d~v~~~L~~G~iv~~~ 184 (374)
+.......+.+.+..+ .|. + |++. ..+||++ .+|.+|+++..+
T Consensus 194 p~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v-~~i~dG~Ivl~~ 248 (347)
T 2obl_A 194 PSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEV-RSILDGHIVLTR 248 (347)
T ss_dssp HHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHH-HHHCSEEEEBCH
T ss_pred HHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--Chhhhhe-EEeeCcEEEEeC
Confidence 9988888888877653 243 3 9887 6889999 999999998653
No 233
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.64 E-value=3.7e-09 Score=103.96 Aligned_cols=27 Identities=33% Similarity=0.564 Sum_probs=23.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCC
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKLAI 49 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~~~ 49 (374)
...+|+++|.+|+|||||+|+|+|...
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~~~~~ 33 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAITGIWT 33 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccc
Confidence 346799999999999999999999643
No 234
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.63 E-value=7.7e-08 Score=92.96 Aligned_cols=48 Identities=21% Similarity=0.263 Sum_probs=31.8
Q ss_pred ccccccccCCc-eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCc
Q 017295 15 RPILGRFSSHL-KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN 62 (374)
Q Consensus 15 ~~vL~~i~~~~-~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~ 62 (374)
..+|++++... .|++||.+|||||||+|+|+|.........-+|..|.
T Consensus 24 ~~~l~~i~~~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~ 72 (360)
T 3t34_A 24 SSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPL 72 (360)
T ss_dssp SCCC----CCCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCE
T ss_pred ccccccccccCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcce
Confidence 35777776655 5999999999999999999997543333334554443
No 235
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.61 E-value=9.2e-08 Score=84.70 Aligned_cols=44 Identities=23% Similarity=0.209 Sum_probs=31.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCC
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD 70 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g 70 (374)
..+|+++|.+|||||||++.|++.. -..+||.++ .+...+.+++
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~-~~~~~~~~~--~~~~~~~~~~ 50 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ-YRDTQTSIT--DSSAIYKVNN 50 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC-CCCBCCCCS--CEEEEEECSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-cccccCCcc--eeeEEEEecC
Confidence 4679999999999999999999875 234555332 4444566554
No 236
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.61 E-value=7.5e-08 Score=94.74 Aligned_cols=52 Identities=17% Similarity=0.271 Sum_probs=28.0
Q ss_pred cCCEEEEEcCCCccccccccccHHHHHHHHHhh--CCCeEEEeeHHHHHHhcCC
Q 017295 202 AKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEH--GGEQIIPFSCALERNLADM 253 (374)
Q Consensus 202 ~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~--~~~~~i~vSa~~e~~l~~l 253 (374)
.+|+|+|+||+|...........+.+++++..+ .+.+++++||+.+.++.+|
T Consensus 135 ~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L 188 (408)
T 1s0u_A 135 IDKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVL 188 (408)
T ss_dssp CCCEEEEEECTTSSCTTTTTTHHHHHHHHHTTSTTTTCCEEEC------CHHHH
T ss_pred CCeEEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHH
Confidence 368999999997422111123455666666432 2467999999998876533
No 237
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.59 E-value=7.1e-08 Score=91.00 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=23.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCC
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAI 49 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~ 49 (374)
.+|+++|.+|||||||+|+|+|...
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred CeEEEEcCCCCCHHHHHHHHHCCCc
Confidence 4699999999999999999999865
No 238
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.58 E-value=1.9e-08 Score=97.10 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=22.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCC
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAI 49 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~ 49 (374)
.+|+++|.+|||||||+|+|+|...
T Consensus 32 ~~I~vvG~~~~GKSSLln~L~g~~~ 56 (353)
T 2x2e_A 32 PQIAVVGGQSAGKSSVLENFVGRDF 56 (353)
T ss_dssp CEEEEECBTTSSHHHHHHTTTTSCC
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCc
Confidence 4699999999999999999999864
No 239
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.58 E-value=3.4e-08 Score=103.61 Aligned_cols=36 Identities=22% Similarity=0.307 Sum_probs=30.4
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCc
Q 017295 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFC 57 (374)
Q Consensus 22 ~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~-~s~~pft 57 (374)
+.+.+|+|+|.+|||||||+|+|+|.... +++.|.|
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T 103 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCT 103 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCc
Confidence 35678999999999999999999999864 4677766
No 240
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.57 E-value=5.9e-08 Score=89.24 Aligned_cols=48 Identities=15% Similarity=0.284 Sum_probs=32.0
Q ss_pred cCCEEEEEcCCCccccccccccHHHHHHHHHhhCCCeEEEeeHHHHHHhcCC
Q 017295 202 AKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADM 253 (374)
Q Consensus 202 ~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~~~~~i~vSa~~e~~l~~l 253 (374)
..|+++|+||+|.. . ...++..+++.....+.+++.+||+.+.++.++
T Consensus 198 ~~piilV~NK~Dl~--~--~~~v~~~~~~~~~~~~~~~~e~SAk~g~gv~el 245 (255)
T 3c5h_A 198 KKPIVVVLTKCDEG--V--ERYIRDAHTFALSKKNLQVVETSARSNVNVDLA 245 (255)
T ss_dssp TCCEEEEEECGGGB--C--HHHHHHHHHHHHTSSSCCEEECBTTTTBSHHHH
T ss_pred CCCEEEEEEccccc--c--cHHHHHHHHHHHhcCCCeEEEEECCCCCCHHHH
Confidence 58999999999642 1 122345555554323567999999998776543
No 241
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.55 E-value=3.9e-08 Score=97.58 Aligned_cols=52 Identities=12% Similarity=0.164 Sum_probs=32.9
Q ss_pred CCEEEEEcCCCccccccc--cccHHHHHHHHHhhC----CCeEEEeeHHHHHHhcCCC
Q 017295 203 KPVVYLVNMNEKDYQRKK--NKFLPKIHAWVQEHG----GEQIIPFSCALERNLADMP 254 (374)
Q Consensus 203 kP~i~v~Nk~d~d~~~~~--~~~~~~l~~~~~~~~----~~~~i~vSa~~e~~l~~l~ 254 (374)
+|+|+|+||+|....+.. +...+.++++++... ..+++++||+.+.++.++.
T Consensus 158 ~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~ 215 (434)
T 1zun_B 158 KHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKS 215 (434)
T ss_dssp CEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCC
T ss_pred CeEEEEEEcCcCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccc
Confidence 469999999974211000 112344555554432 1578999999999998874
No 242
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.55 E-value=3e-08 Score=102.16 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcC
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
.+|+|+|.+|+|||||++.|++.
T Consensus 178 ~~I~iiG~~d~GKSTLi~~Ll~~ 200 (592)
T 3mca_A 178 VHLVVTGHVDSGKSTMLGRIMFE 200 (592)
T ss_dssp EEEEEECCSSSTHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 45999999999999999999753
No 243
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.55 E-value=1.3e-08 Score=102.57 Aligned_cols=59 Identities=15% Similarity=0.191 Sum_probs=42.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhh
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~ 99 (374)
...|+++|.+|+|||||++.|++.....+..++.|.+.....+.+++. .++++|+||..
T Consensus 4 ~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~-----------------~i~~iDTPGhe 62 (501)
T 1zo1_I 4 APVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENG-----------------MITFLDTPGHA 62 (501)
T ss_dssp CCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSS-----------------CCCEECCCTTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCE-----------------EEEEEECCCcH
Confidence 356999999999999999999987655566677776654433333332 27889999864
No 244
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.54 E-value=6.4e-08 Score=84.77 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcC
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
...+|+++|.+|||||||++.+++.
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhc
Confidence 4567999999999999999999986
No 245
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.50 E-value=4.8e-09 Score=93.90 Aligned_cols=35 Identities=11% Similarity=0.089 Sum_probs=32.8
Q ss_pred ccccccccccCCceEEEEcCCCCcHHHHHHHHHcC
Q 017295 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 13 ~~~~vL~~i~~~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
+++.+|+++..|..++|+||||||||||+++|+|.
T Consensus 11 g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 11 GQKHYVDAIDTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHHHHHHHHHHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred hHHHHHHhccCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45679999999999999999999999999999997
No 246
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.50 E-value=4.8e-08 Score=95.99 Aligned_cols=25 Identities=36% Similarity=0.619 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcC
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
...+|+++|.+|+|||||++.|++.
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~ 34 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYV 34 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhh
Confidence 4467999999999999999999984
No 247
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.49 E-value=5.1e-09 Score=112.16 Aligned_cols=59 Identities=17% Similarity=0.196 Sum_probs=51.1
Q ss_pred hHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHH------hCCCceeccCC
Q 017295 126 DLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWL------QDGKDVRLGDW 186 (374)
Q Consensus 126 ~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L------~~G~iv~~~~~ 186 (374)
.++++|||++++|+.....+++.+.++.+++.+ |++..+.. ||+| .+| ++|+++..|+.
T Consensus 828 ~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~-ADrI-ivLgp~gg~~~G~Iv~~Gtp 897 (916)
T 3pih_A 828 TLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKN-ADHI-IDLGPEGGKEGGYIVATGTP 897 (916)
T ss_dssp EEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTT-CSEE-EEEESSSGGGCCEEEEEESH
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh-CCEE-EEecCCCCCCCCEEEEEcCH
Confidence 799999999999999999999999988766765 99987654 9999 888 88999988754
No 248
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.49 E-value=4.3e-08 Score=96.51 Aligned_cols=42 Identities=33% Similarity=0.288 Sum_probs=29.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCCC---CCCCCcccCCceeEE
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA---ENFPFCTIEPNEARV 66 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~~---s~~pftT~~p~~G~i 66 (374)
.+|+++|..|+|||||++.|+|..... .-.++.|++......
T Consensus 11 ~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~ 55 (410)
T 1kk1_A 11 VNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADA 55 (410)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeee
Confidence 569999999999999999999874321 123566666543333
No 249
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.48 E-value=1.6e-08 Score=97.16 Aligned_cols=26 Identities=35% Similarity=0.732 Sum_probs=22.9
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHcC
Q 017295 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 22 ~~~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
..+..++|+|+||||||||++.|++.
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 34667999999999999999999865
No 250
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.48 E-value=5.9e-09 Score=111.37 Aligned_cols=58 Identities=12% Similarity=0.233 Sum_probs=49.5
Q ss_pred hHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHH------hCCCceeccC
Q 017295 126 DLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWL------QDGKDVRLGD 185 (374)
Q Consensus 126 ~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L------~~G~iv~~~~ 185 (374)
+++++|||+.++|+.....+++.+.++.+.+.+ |++..+ ..||++ .+| .+|+++..++
T Consensus 868 ~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i-~~aDrI-ivL~p~gG~~~G~Iv~~g~ 936 (972)
T 2r6f_A 868 TLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVI-KTADYI-IDLGPEGGDRGGQIVAVGT 936 (972)
T ss_dssp EEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEE-EEECSSSTTSCCSEEEEES
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEE-EEEcCCCCCCCCEEEEecC
Confidence 899999999999999999999999988766655 999876 579999 888 6788887654
No 251
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.48 E-value=6e-08 Score=96.25 Aligned_cols=53 Identities=9% Similarity=0.216 Sum_probs=34.4
Q ss_pred CCEEEEEcCCCccccccc----cccHHHHHHHHHhhC----CCeEEEeeHHHHHHhcCCCh
Q 017295 203 KPVVYLVNMNEKDYQRKK----NKFLPKIHAWVQEHG----GEQIIPFSCALERNLADMPP 255 (374)
Q Consensus 203 kP~i~v~Nk~d~d~~~~~----~~~~~~l~~~~~~~~----~~~~i~vSa~~e~~l~~l~~ 255 (374)
+|+|+|+||+|......+ +...+.+++++.... ..+++++||+.+.++.++..
T Consensus 145 ~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 145 DQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp TTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred CeEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 578999999974210000 123455666665442 25799999999999987743
No 252
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.45 E-value=3.8e-08 Score=99.97 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHH
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLT 45 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Lt 45 (374)
.-.+|+|+|.+|||||||++.|+
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll 34 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLL 34 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHH
Confidence 33569999999999999999997
No 253
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.39 E-value=6e-09 Score=111.66 Aligned_cols=58 Identities=10% Similarity=0.162 Sum_probs=49.4
Q ss_pred hHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHH------hCCCceeccC
Q 017295 126 DLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWL------QDGKDVRLGD 185 (374)
Q Consensus 126 ~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L------~~G~iv~~~~ 185 (374)
+++++|||++++|+.....+++.+.++.+.+.+ |++..+ ..||++ .+| .+|+++..++
T Consensus 886 ~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i-~~aDrI-ivL~p~gg~~~G~Iv~~G~ 954 (993)
T 2ygr_A 886 TVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVI-KTSDWI-IDLGPEGGAGGGTVVAQGT 954 (993)
T ss_dssp EEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEE-EEEESSSTTSCSEEEEEEC
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEE-EEECCCcCCCCCEEEEecC
Confidence 899999999999999999999999988766655 999876 579999 888 6788887654
No 254
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.38 E-value=5.8e-08 Score=94.36 Aligned_cols=57 Identities=12% Similarity=0.096 Sum_probs=35.3
Q ss_pred cccccccCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhH
Q 017295 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDI 95 (374)
Q Consensus 16 ~vL~~i~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~ 95 (374)
.+|.+..+. .|+++|.+|+|||||++.|+. ++.|++.....+..++. .++++|+
T Consensus 14 ~~~~~~~m~-~i~iiG~~d~GKSTL~~~L~~--------~giTi~~~~~~~~~~~~-----------------~i~iiDt 67 (370)
T 2elf_A 14 LVPRGSHMA-NVAIIGTEKSGRTSLAANLGK--------KGTSSDITMYNNDKEGR-----------------NMVFVDA 67 (370)
T ss_dssp ------CEE-EEEEEESTTSSHHHHHHTTSE--------EEEESSSEEEEECSSSS-----------------EEEEEEC
T ss_pred cccccccCC-EEEEECCCCCCHHHHHHHHHh--------CCEEEEeeEEEEecCCe-----------------EEEEEEC
Confidence 445555554 899999999999999999982 24455544333333222 2688888
Q ss_pred hhh
Q 017295 96 AGL 98 (374)
Q Consensus 96 ~gl 98 (374)
||.
T Consensus 68 PGh 70 (370)
T 2elf_A 68 HSY 70 (370)
T ss_dssp TTT
T ss_pred CCh
Confidence 886
No 255
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.38 E-value=1.1e-07 Score=88.87 Aligned_cols=58 Identities=36% Similarity=0.509 Sum_probs=35.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhc
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~~~-~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~ 100 (374)
...+++++|.||+|||||+|.|+|... .++++|+||..+. .+.+.. .+.++|+||+..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~~~------------------~~~l~DtpG~~~ 177 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKVGK------------------ELELLDTPGILW 177 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEETT------------------TEEEEECCCCCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE--EEEeCC------------------CEEEEECcCcCC
Confidence 346799999999999999999999884 6799999998774 233321 278899999853
No 256
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.38 E-value=1.6e-07 Score=90.65 Aligned_cols=53 Identities=13% Similarity=0.154 Sum_probs=33.1
Q ss_pred ccCCEEEEEcCCCccccccccccHHHHHHHHHhhC------CCeEEEeeHHHHHHhcCC
Q 017295 201 TAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHG------GEQIIPFSCALERNLADM 253 (374)
Q Consensus 201 ~~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~~------~~~~i~vSa~~e~~l~~l 253 (374)
..+|.++|+||+|...........+.+++.+.... +.+++++||+.+.++.+|
T Consensus 216 ~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L 274 (355)
T 3p32_A 216 LELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAEL 274 (355)
T ss_dssp GGGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHH
T ss_pred hhcCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHH
Confidence 35799999999975321111122334444332221 357999999999988777
No 257
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.37 E-value=4.6e-08 Score=94.55 Aligned_cols=35 Identities=14% Similarity=0.169 Sum_probs=28.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCc-eeEEEe
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN-EARVNI 68 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~-~G~i~~ 68 (374)
.+..++|+||||||||||+++|+|. +.|+ .|.|..
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~-----------~~~~~~~~i~t 157 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDY-----------LNNTKYHHILT 157 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHH-----------HHHHCCCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc-----------ccCCCCcEEEE
Confidence 3457999999999999999999998 7776 466543
No 258
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.36 E-value=2.3e-08 Score=98.24 Aligned_cols=58 Identities=10% Similarity=-0.024 Sum_probs=43.9
Q ss_pred CCchhHHHHHHHHHhhcHHHHHHHHHHHHHHHHccCc-----cchHHHHHHHHHHHHHH----hCCCcee
Q 017295 122 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND-----KQLKIEHELCQRVKAWL----QDGKDVR 182 (374)
Q Consensus 122 dP~~~l~ilde~l~~~D~~~~~~~~~~i~~~~~~~~~-----H~~~~~~~~~d~v~~~L----~~G~iv~ 182 (374)
+|..+++++|||++++|+.....+.+.+.++. ++.+ |+... ...||++ .+| ++|+++.
T Consensus 313 ~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~~-~~~~d~i-~~l~k~~~~G~~~~ 379 (415)
T 4aby_A 313 GADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQI-AARAHHH-YKVEKQVEDGRTVS 379 (415)
T ss_dssp CCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHHH-HTTCSEE-EEEEEEEETTEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHHH-HhhcCeE-EEEEEeccCCceEE
Confidence 44237889999999999999999999998876 4443 98755 4568888 777 6776653
No 259
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.35 E-value=3.5e-07 Score=91.57 Aligned_cols=53 Identities=15% Similarity=0.250 Sum_probs=33.4
Q ss_pred cCC-EEEEEcCCCccccccc----cccHHHHHHHHHhh-C-----CCeEEEeeHHHHHHhcCCC
Q 017295 202 AKP-VVYLVNMNEKDYQRKK----NKFLPKIHAWVQEH-G-----GEQIIPFSCALERNLADMP 254 (374)
Q Consensus 202 ~kP-~i~v~Nk~d~d~~~~~----~~~~~~l~~~~~~~-~-----~~~~i~vSa~~e~~l~~l~ 254 (374)
..| +|+|+||+|....... +...+.+.+++... . +.+++++||+.+.++.++.
T Consensus 180 ~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 180 GINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp TCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred CCCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 456 8999999975211100 11233455555433 1 3469999999999998875
No 260
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.35 E-value=9.3e-08 Score=95.54 Aligned_cols=51 Identities=12% Similarity=0.199 Sum_probs=32.4
Q ss_pred CEEEEEcCCCccccccc--cccHHHHHHHHHhhC----CCeEEEeeHHHHHHhcCCC
Q 017295 204 PVVYLVNMNEKDYQRKK--NKFLPKIHAWVQEHG----GEQIIPFSCALERNLADMP 254 (374)
Q Consensus 204 P~i~v~Nk~d~d~~~~~--~~~~~~l~~~~~~~~----~~~~i~vSa~~e~~l~~l~ 254 (374)
|+|+|+||+|....+.. +...+.+++++.... ..+++++||+.+.++.++.
T Consensus 147 ~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~ 203 (458)
T 1f60_A 147 QLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEAT 203 (458)
T ss_dssp EEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCC
T ss_pred eEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccccc
Confidence 48999999974210100 123344555554442 2579999999999998774
No 261
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.34 E-value=4.1e-07 Score=78.92 Aligned_cols=27 Identities=33% Similarity=0.401 Sum_probs=23.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCC
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKLAI 49 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~~~ 49 (374)
...+|+++|++|||||||++.|++...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~ 73 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSV 73 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 345799999999999999999999753
No 262
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.34 E-value=3.4e-07 Score=79.68 Aligned_cols=40 Identities=25% Similarity=0.346 Sum_probs=34.3
Q ss_pred cccCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcc
Q 017295 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72 (374)
Q Consensus 20 ~i~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~ 72 (374)
.+..+..++|+|+||||||||+++|++. |..|.|.+++.+
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~-------------~~~g~i~i~~d~ 44 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL-------------PGVPKVHFHSDD 44 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC-------------SSSCEEEECTTH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc-------------cCCCeEEEcccc
Confidence 3667888999999999999999999997 678889888754
No 263
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.34 E-value=2.8e-07 Score=84.93 Aligned_cols=60 Identities=23% Similarity=0.324 Sum_probs=51.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhc
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~~-~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~ 100 (374)
..+|+++|.+|+|||||+|.|+|... .++++|++|..+....+.+++.. ++++|+||+..
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-----------------l~liDTpG~~~ 96 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFT-----------------INIIDTPGLVE 96 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEE-----------------EEEEECCCSEE
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCee-----------------EEEEECCCCCC
Confidence 46799999999999999999999876 56899999999988888887654 78999999854
No 264
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.32 E-value=3.5e-07 Score=96.05 Aligned_cols=38 Identities=24% Similarity=0.361 Sum_probs=29.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCCcccCCce
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNE 63 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~-~~s~~pftT~~p~~ 63 (374)
.+|+++|.++||||||+|+|+|... +.++ -.||..|..
T Consensus 52 p~I~vvG~~saGKSSllnaL~g~~~LP~g~-g~~Tr~Pl~ 90 (772)
T 3zvr_A 52 PQIAVVGGQSAGKSSVLENFVGRDFLPRGS-GIVTRRPLV 90 (772)
T ss_dssp SEEEEEECTTTCHHHHHHHHHSSCCSCCSS-SCSCSSCEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCccCcCC-ccccccceE
Confidence 3599999999999999999999876 3333 357776644
No 265
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.29 E-value=1e-07 Score=84.69 Aligned_cols=25 Identities=36% Similarity=0.417 Sum_probs=22.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCC
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLA 48 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~ 48 (374)
..+|+++|++|+|||||++.|++..
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3579999999999999999999875
No 266
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.29 E-value=1.7e-07 Score=93.85 Aligned_cols=50 Identities=16% Similarity=0.061 Sum_probs=42.0
Q ss_pred ccccccccCC---ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhh
Q 017295 15 RPILGRFSSH---LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW 75 (374)
Q Consensus 15 ~~vL~~i~~~---~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~ 75 (374)
..+|+++++. ..+||+||||||||||+++|+|+ +.|++|.|.++|.++..
T Consensus 17 ~~~l~~vsl~i~~e~~~liG~nGsGKSTLl~~l~Gl-----------~~p~~G~I~~~g~~~~~ 69 (483)
T 3euj_A 17 WNGFFARTFDFDELVTTLSGGNGAGKSTTMAGFVTA-----------LIPDLTLLNFRNTTEAG 69 (483)
T ss_dssp ETTEEEEEEECCSSEEEEECCTTSSHHHHHHHHHHH-----------HCCCTTTCCCCCTTSCS
T ss_pred cccccceEEEEccceEEEECCCCCcHHHHHHHHhcC-----------CCCCCCEEEECCEEccc
Confidence 3467766544 46999999999999999999999 88999999999987643
No 267
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.29 E-value=2.1e-07 Score=82.19 Aligned_cols=48 Identities=19% Similarity=0.182 Sum_probs=34.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCCC--CCCCCcccCCceeEEEeCCcc
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPA--ENFPFCTIEPNEARVNIPDER 72 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~--s~~pftT~~p~~G~i~~~g~~ 72 (374)
.+..++|+||||||||||+++|+|..... .+.+.||..|..|. ++|..
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~ 52 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKD 52 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCce
Confidence 45679999999999999999999974322 34455677788886 45544
No 268
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.26 E-value=1.1e-07 Score=92.37 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=36.8
Q ss_pred cccc--ccCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCc-eeEEEeCCcch
Q 017295 17 ILGR--FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN-EARVNIPDERF 73 (374)
Q Consensus 17 vL~~--i~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~-~G~i~~~g~~~ 73 (374)
+|++ +..+..++|+||||||||||+++|+|. +.|+ +|.|.+.+.++
T Consensus 127 ~l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~-----------~~~~~~g~I~~~e~~~ 175 (372)
T 2ewv_A 127 KVLELCHRKMGLILVTGPTGSGKSTTIASMIDY-----------INQTKSYHIITIEDPI 175 (372)
T ss_dssp SHHHHTTSSSEEEEEECSSSSSHHHHHHHHHHH-----------HHHHSCCEEEEEESSC
T ss_pred HHHHHhhcCCCEEEEECCCCCCHHHHHHHHHhh-----------cCcCCCcEEEEecccH
Confidence 4554 345677999999999999999999999 7787 89986655443
No 269
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.23 E-value=9.5e-07 Score=86.50 Aligned_cols=24 Identities=38% Similarity=0.710 Sum_probs=21.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcC
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
..+|+++|.+|+|||||++.|++.
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~ 26 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKI 26 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhCh
Confidence 357999999999999999999985
No 270
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.22 E-value=5.5e-07 Score=92.23 Aligned_cols=73 Identities=23% Similarity=0.196 Sum_probs=51.6
Q ss_pred ccccccCC-ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhH
Q 017295 17 ILGRFSSH-LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDI 95 (374)
Q Consensus 17 vL~~i~~~-~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~ 95 (374)
+|..+... ..|+|+|+||+|||||+|.|+|....+ ++|+||...+.|...+.- ++ + ......+.++|+
T Consensus 30 ~L~~i~~~~~~VaivG~pnvGKStLiN~L~g~~~~~-~~~~tt~~~T~gi~~~~~-~~--------~-~~~~~~i~LiDT 98 (592)
T 1f5n_A 30 ILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKKKGF-SLGSTVQSHTKGIWMWCV-PH--------P-KKPGHILVLLDT 98 (592)
T ss_dssp HHHTCCSBEEEEEEEEBTTSSHHHHHHHHTTCSSCS-CCCCSSSCCCCSEEEEEE-EC--------S-SSTTCEEEEEEE
T ss_pred HHHhccCCCcEEEEECCCCCCHHHHHHhHcCCCCcc-ccCCCCCCceeEEEEeec-cc--------c-cCCCceEEEecC
Confidence 45555443 459999999999999999999987655 899999999999865410 00 0 000123678888
Q ss_pred hhhhc
Q 017295 96 AGLVR 100 (374)
Q Consensus 96 ~gl~~ 100 (374)
+|+..
T Consensus 99 pGi~~ 103 (592)
T 1f5n_A 99 EGLGD 103 (592)
T ss_dssp CCBCC
T ss_pred CCcCc
Confidence 88864
No 271
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.22 E-value=1.1e-07 Score=84.97 Aligned_cols=40 Identities=13% Similarity=0.079 Sum_probs=31.1
Q ss_pred cccCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCC
Q 017295 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD 70 (374)
Q Consensus 20 ~i~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g 70 (374)
.+..|..++|+|+||||||||++.|++. ..+..|.+.+.+
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~-----------~~~~~~~v~~~~ 58 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAK-----------GLRDGDPCIYVT 58 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHH-----------HHHHTCCEEEEE
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHH-----------HHHCCCeEEEEE
Confidence 4556677999999999999999999987 445566665533
No 272
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.22 E-value=6.1e-07 Score=86.84 Aligned_cols=39 Identities=26% Similarity=0.295 Sum_probs=35.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcc
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~ 72 (374)
.+..++|+|+||||||||+|+|+|. ++|+.|.|.++|.+
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~-----------~~~~~g~I~ie~~~ 212 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQE-----------IPFDQRLITIEDVP 212 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTT-----------SCTTSCEEEEESSS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhc-----------CCCCceEEEECCcc
Confidence 4567999999999999999999999 88999999998753
No 273
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.21 E-value=2.8e-07 Score=80.42 Aligned_cols=42 Identities=29% Similarity=0.224 Sum_probs=32.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCCC--CCCCCcccCCceeEE
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA--ENFPFCTIEPNEARV 66 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~~--s~~pftT~~p~~G~i 66 (374)
..++|+||||||||||+++|+|..... .....||..|..|++
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~ 45 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV 45 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc
Confidence 458999999999999999999985311 344566777777764
No 274
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.21 E-value=3.5e-07 Score=86.40 Aligned_cols=42 Identities=24% Similarity=0.309 Sum_probs=37.2
Q ss_pred ccCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcch
Q 017295 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73 (374)
Q Consensus 21 i~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~ 73 (374)
+..+..++|+|+||||||||++.|+|. +.|+.|.|.+.|.++
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~-----------l~~~~g~V~l~g~d~ 138 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHR-----------LKNEGTKVLMAAGDT 138 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHH-----------HHHTTCCEEEECCCC
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHH-----------HHHcCCeEEEEeecc
Confidence 445678999999999999999999999 788999999988764
No 275
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.20 E-value=4.7e-07 Score=81.51 Aligned_cols=29 Identities=21% Similarity=0.219 Sum_probs=24.3
Q ss_pred cccCCceEEEEcCCCCcHHHHHHHHHcCC
Q 017295 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLA 48 (374)
Q Consensus 20 ~i~~~~~vgLvG~nGaGKSTL~n~Ltg~~ 48 (374)
....|..++|+||||||||||+++|+|..
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 35667889999999999999999999983
No 276
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.20 E-value=4.4e-07 Score=95.12 Aligned_cols=58 Identities=22% Similarity=0.189 Sum_probs=35.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHc---CCCC---------CCC------CCCcccCCceeEEEeCCcchhhhhhhccCCCCc
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTK---LAIP---------AEN------FPFCTIEPNEARVNIPDERFEWLCQLFKPKSAV 86 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg---~~~~---------~s~------~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~ 86 (374)
.+|+|+|.+|+|||||++.|++ .... +.+ .+++|+....+.+.+.+..
T Consensus 11 ~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~-------------- 76 (693)
T 2xex_A 11 RNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHR-------------- 76 (693)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEE--------------
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCee--------------
Confidence 5699999999999999999994 3110 122 2566666666666555432
Q ss_pred cccchHhhHhhhh
Q 017295 87 PAFLEIHDIAGLV 99 (374)
Q Consensus 87 ~~~~~v~D~~gl~ 99 (374)
+.++|++|..
T Consensus 77 ---i~liDTPG~~ 86 (693)
T 2xex_A 77 ---VNIIDTPGHV 86 (693)
T ss_dssp ---EEEECCCCCS
T ss_pred ---EEEEECcCCc
Confidence 6788888873
No 277
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.19 E-value=2.6e-06 Score=87.64 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCC
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLA 48 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~ 48 (374)
.+|+|+|.+|+|||||++.|++..
T Consensus 6 ~~V~IvGh~d~GKTTLl~~L~~~~ 29 (594)
T 1g7s_A 6 PIVSVLGHVDHGKTTLLDHIRGSA 29 (594)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHhccc
Confidence 569999999999999999999863
No 278
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.19 E-value=5.4e-08 Score=104.63 Aligned_cols=138 Identities=16% Similarity=0.006 Sum_probs=76.5
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHH--------HcCCCCCCCCCCcccCCcee-EEEeCCcchhhhhhh-
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTL--------TKLAIPAENFPFCTIEPNEA-RVNIPDERFEWLCQL- 79 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~L--------tg~~~~~s~~pftT~~p~~G-~i~~~g~~~~~l~~~- 79 (374)
.+.|+++++++ ..++|+||||||||||++++ +|. .-|..+ .+.+-+.-+..+...
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~-----------~vpa~~~~~~~~d~i~~~ig~~d 716 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGC-----------FVPCESAEVSIVDCILARVGAGD 716 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTC-----------CBSEEEEEEECCSEEEEECC---
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCC-----------ccccccccchHHHHHHHhcCchh
Confidence 45778888754 45999999999999999999 665 223322 222211100000000
Q ss_pred ccCCCCccccchHhhHhhhhccccCCCCCCCCCceeEecCCCCCchhHHHHHHHHHhhcHHHHHHH-HHHHHHHHHc-cC
Q 017295 80 FKPKSAVPAFLEIHDIAGLVRGAHEGQGAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERR-IEDVEKSMKR-SN 157 (374)
Q Consensus 80 ~~~~~~~~~~~~v~D~~gl~~~~~~~~~~~~~~~il~l~~~~dP~~~l~ilde~l~~~D~~~~~~~-~~~i~~~~~~-~~ 157 (374)
...+..-.........+.+... +.+| .+.++|||+.++|+.....+ +..+..+.++ +.
T Consensus 717 ~l~~~lStf~~e~~~~a~il~~------------------a~~~--sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~ 776 (934)
T 3thx_A 717 SQLKGVSTFMAEMLETASILRS------------------ATKD--SLIIIDELGRGTSTYDGFGLAWAISEYIATKIGA 776 (934)
T ss_dssp ------CHHHHHHHHHHHHHHH------------------CCTT--CEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred hHHHhHhhhHHHHHHHHHHHHh------------------ccCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 0000000000122222222211 2346 88888999999998876666 5555655543 44
Q ss_pred c-----cchHHHHHHHHHHHHHHhCCCceecc
Q 017295 158 D-----KQLKIEHELCQRVKAWLQDGKDVRLG 184 (374)
Q Consensus 158 ~-----H~~~~~~~~~d~v~~~L~~G~iv~~~ 184 (374)
+ |+.+ +..+++++ ..+.+|++...+
T Consensus 777 ~vl~aTH~~e-l~~lad~~-~~v~ng~v~~~~ 806 (934)
T 3thx_A 777 FCMFATHFHE-LTALANQI-PTVNNLHVTALT 806 (934)
T ss_dssp EEEEEESCGG-GGGGGGTC-TTEEEEEEEEEE
T ss_pred EEEEEcCcHH-HHHHhccc-ceeEeeEEEEEe
Confidence 3 8754 34678888 777888776543
No 279
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.19 E-value=1.1e-06 Score=83.18 Aligned_cols=67 Identities=27% Similarity=0.324 Sum_probs=45.6
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccC--CceeEEEe---CCcchhh--hhh-hccCCCC-ccccchH
Q 017295 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE--PNEARVNI---PDERFEW--LCQ-LFKPKSA-VPAFLEI 92 (374)
Q Consensus 22 ~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~--p~~G~i~~---~g~~~~~--l~~-~~~~~~~-~~~~~~v 92 (374)
..+..+||+|+||||||||+++|+|. +. |++|.|.+ +|..... ... .+. +.. .+..+++
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~-----------l~~~~~~G~i~vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~ 145 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL-----------LSRWPEHRRVELITTDGFLHPNQVLKERGLM-KKKGFPESYDM 145 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH-----------HTTSTTCCCEEEEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH-----------HhhCCCCCeEEEEecCCccCcHHHHHhCCEe-ecCCCCCCccH
Confidence 55678999999999999999999998 66 88999988 7654311 111 233 322 4455566
Q ss_pred hhHhhhhc
Q 017295 93 HDIAGLVR 100 (374)
Q Consensus 93 ~D~~gl~~ 100 (374)
.++..+..
T Consensus 146 ~~~~~~~~ 153 (308)
T 1sq5_A 146 HRLVKFVS 153 (308)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66555543
No 280
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.19 E-value=6.5e-07 Score=84.40 Aligned_cols=43 Identities=21% Similarity=0.275 Sum_probs=28.5
Q ss_pred ccCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEe---CCcchh
Q 017295 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNI---PDERFE 74 (374)
Q Consensus 21 i~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~---~g~~~~ 74 (374)
+-.+..++|+|+||||||||+|+|+|. ..|++|.|.+ .|..+.
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l~g~-----------~~~~~G~i~~~~~~g~~~t 211 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAINPG-----------LKLRVSEVSEKLQRGRHTT 211 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHHSTT-----------CCCC-------------CC
T ss_pred HhcCCeEEEECCCCCcHHHHHHHhccc-----------ccccccceecccCCCCCce
Confidence 345678999999999999999999999 7799999998 676543
No 281
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.19 E-value=1e-06 Score=78.42 Aligned_cols=50 Identities=10% Similarity=0.038 Sum_probs=32.0
Q ss_pred cCCEEEEEcCCCccccccccccHHHHHHHHHhh-CCCeEEEeeHHHHHHhcCC
Q 017295 202 AKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEH-GGEQIIPFSCALERNLADM 253 (374)
Q Consensus 202 ~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~-~~~~~i~vSa~~e~~l~~l 253 (374)
.+|.++|+||+|.. .......+.+.+.+... +..+++++||+.+.++.++
T Consensus 154 ~~~~iiv~NK~Dl~--~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l 204 (221)
T 2wsm_A 154 RVADLIVINKVALA--EAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEW 204 (221)
T ss_dssp HTCSEEEEECGGGH--HHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHH
T ss_pred hcCCEEEEecccCC--cchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHH
Confidence 58999999999742 11112344555555433 2468999999998765533
No 282
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.19 E-value=6.1e-07 Score=79.65 Aligned_cols=41 Identities=24% Similarity=0.302 Sum_probs=34.4
Q ss_pred ccCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCC---ceeEEEeCCcc
Q 017295 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP---NEARVNIPDER 72 (374)
Q Consensus 21 i~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p---~~G~i~~~g~~ 72 (374)
...+..+||+|+||||||||+++|+|. +.| ..|.|.++|..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~-----------~~~~g~~~g~v~~d~~~ 62 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAA-----------LSAQGLPAEVVPMDGFH 62 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHH-----------HHHTTCCEEEEESGGGB
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH-----------HhhcCCceEEEecCCCc
Confidence 456788999999999999999999998 553 57888877643
No 283
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.18 E-value=1.5e-06 Score=88.70 Aligned_cols=36 Identities=17% Similarity=0.256 Sum_probs=31.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCC---CCCCCCccc
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLAIP---AENFPFCTI 59 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~~~---~s~~pftT~ 59 (374)
-..|+|+|.+|||||||+|.|+|.... +++.|.||.
T Consensus 65 ~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~ 103 (550)
T 2qpt_A 65 KPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDC 103 (550)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCS
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccce
Confidence 356999999999999999999999863 688888864
No 284
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.18 E-value=1e-06 Score=81.47 Aligned_cols=60 Identities=25% Similarity=0.286 Sum_probs=49.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHhhhhc
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~~-~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~gl~~ 100 (374)
..+|+++|.+|+|||||+|.|+|... .+++++++|..+....+...+.. ++++|+||+..
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-----------------l~iiDTpG~~~ 99 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFT-----------------LNIIDTPGLIE 99 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEE-----------------EEEEECCCSEE
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeE-----------------EEEEECCCCCC
Confidence 45799999999999999999999876 45899999988877766655533 78899999853
No 285
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.16 E-value=2.3e-07 Score=90.12 Aligned_cols=58 Identities=28% Similarity=0.380 Sum_probs=45.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcC------CCCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhHh
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKL------AIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIA 96 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~------~~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~~ 96 (374)
.+..++++|.+|+|||||+|+|+|. .+.++++|+||..+..+ .+.+ .+.++|+|
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~--~~~~------------------~~~liDtP 220 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEI--PLES------------------GATLYDTP 220 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEE--ECST------------------TCEEEECC
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEE--EeCC------------------CeEEEeCC
Confidence 3567999999999999999999997 44569999999876543 2221 27899999
Q ss_pred hhhc
Q 017295 97 GLVR 100 (374)
Q Consensus 97 gl~~ 100 (374)
|+..
T Consensus 221 G~~~ 224 (369)
T 3ec1_A 221 GIIN 224 (369)
T ss_dssp SCCC
T ss_pred CcCc
Confidence 9964
No 286
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.15 E-value=6.2e-07 Score=85.64 Aligned_cols=41 Identities=22% Similarity=0.257 Sum_probs=36.7
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcch
Q 017295 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73 (374)
Q Consensus 22 ~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~ 73 (374)
..+..++|+|+||||||||+++|+|. +.|+.|.|.+.|.++
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~-----------l~~~~g~V~l~g~D~ 167 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANW-----------LKNHGFSVVIAASDT 167 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHH-----------HHHTTCCEEEEEECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH-----------HHhcCCEEEEEeecc
Confidence 45778999999999999999999999 889999999987765
No 287
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.14 E-value=3.9e-07 Score=86.11 Aligned_cols=44 Identities=16% Similarity=0.203 Sum_probs=26.0
Q ss_pred cccccCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEe---CCcc
Q 017295 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNI---PDER 72 (374)
Q Consensus 18 L~~i~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~---~g~~ 72 (374)
|-.+..+..++|+|+||||||||+|+|+|. ..|..|.|.+ .|+.
T Consensus 167 L~~~~~G~~~~lvG~sG~GKSTLln~L~g~-----------~~~~~G~I~~~~~~G~~ 213 (307)
T 1t9h_A 167 IIPHFQDKTTVFAGQSGVGKSSLLNAISPE-----------LGLRTNEISEHLGRGKH 213 (307)
T ss_dssp TGGGGTTSEEEEEESHHHHHHHHHHHHCC-----------------------------
T ss_pred HHhhcCCCEEEEECCCCCCHHHHHHHhccc-----------ccccccceeeecCCCcc
Confidence 445667889999999999999999999999 6788888887 5544
No 288
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.13 E-value=1.3e-06 Score=78.06 Aligned_cols=29 Identities=24% Similarity=0.344 Sum_probs=26.7
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHcC
Q 017295 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 19 ~~i~~~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
+.+..+..++|+||||||||||+++|+|.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 57788889999999999999999999995
No 289
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.12 E-value=8.2e-07 Score=83.90 Aligned_cols=40 Identities=20% Similarity=0.204 Sum_probs=36.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcch
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~ 73 (374)
.+..++|+|+||||||||+++|+|. +.|+.|.|.+.|.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl-----------l~~~~g~V~l~g~D~ 140 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY-----------YQNLGKKVMFCAGDT 140 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH-----------HHTTTCCEEEECCCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH-----------HHhcCCEEEEEeecC
Confidence 4678999999999999999999999 889999999988764
No 290
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.12 E-value=3.3e-07 Score=80.64 Aligned_cols=37 Identities=22% Similarity=0.363 Sum_probs=30.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcch
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~ 73 (374)
|..++|+|+||||||||+++|+|. +. ++| +.++|.+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~-----------~~-~~G-i~~~g~~~ 37 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEV-----------LK-SSG-VPVDGFYT 37 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHH-----------HH-HTT-CCCEEEEC
T ss_pred CCEEEEECCCCChHHHHHHHHHhh-----------cc-cCC-EEEcCEec
Confidence 457899999999999999999998 66 677 76666443
No 291
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.12 E-value=1.2e-06 Score=82.60 Aligned_cols=32 Identities=31% Similarity=0.463 Sum_probs=27.1
Q ss_pred ccccccc----CCceEEEEcCCCCcHHHHHHHHHcC
Q 017295 16 PILGRFS----SHLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 16 ~vL~~i~----~~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
.+|++++ .|..++|+||||||||||+++|+|.
T Consensus 114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 114 NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 3566655 4567999999999999999999999
No 292
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.12 E-value=6e-07 Score=86.07 Aligned_cols=48 Identities=27% Similarity=0.495 Sum_probs=39.6
Q ss_pred ccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcch
Q 017295 15 RPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73 (374)
Q Consensus 15 ~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~ 73 (374)
..+|+++++ +..++|+|+||||||||+|+|+|. +.|+.|.|.+.+.+.
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~-----------~~~~~g~v~i~~~d~ 93 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSL-----------LTAAGHKVAVLAVDP 93 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHH-----------HHHTTCCEEEEEECG
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHh-----------hhhCCCEEEEEEEcC
Confidence 356777664 566999999999999999999998 778889998876554
No 293
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.11 E-value=1.1e-06 Score=90.32 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=18.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcC
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
.+++|+|..|+|||||++.|+..
T Consensus 7 rnI~IiGh~d~GKTTLi~rLl~~ 29 (600)
T 2ywe_A 7 RNFCIIAHVDHGKSTLADRLLEY 29 (600)
T ss_dssp EEEEEECC--CCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 35999999999999999999753
No 294
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.10 E-value=7.9e-07 Score=85.84 Aligned_cols=42 Identities=24% Similarity=0.309 Sum_probs=37.2
Q ss_pred ccCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcch
Q 017295 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73 (374)
Q Consensus 21 i~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~ 73 (374)
+..+..++|+|+||||||||++.|+|. +.|+.|.|.+.+.++
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~-----------l~~~~G~V~l~g~D~ 195 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHR-----------LKNEGTKVLMAAGDT 195 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHH-----------HHHTTCCEEEECCCC
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhh-----------ccccCCEEEEecccc
Confidence 445678999999999999999999999 788999999988764
No 295
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.10 E-value=1.7e-06 Score=76.54 Aligned_cols=48 Identities=19% Similarity=0.292 Sum_probs=39.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCC-C-CCCCCcccCCceeEEEeCCcc
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIP-A-ENFPFCTIEPNEARVNIPDER 72 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~~~~-~-s~~pftT~~p~~G~i~~~g~~ 72 (374)
.+..++|+||+|||||||+++|++.... . ...+.||++|..|+ ++|.+
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~ 67 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKE 67 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSS
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--ecccc
Confidence 3567999999999999999999987652 2 67889999999997 56654
No 296
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.10 E-value=1.6e-06 Score=75.22 Aligned_cols=43 Identities=21% Similarity=0.255 Sum_probs=31.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCC-C-CCCCCcccCCceeE
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIP-A-ENFPFCTIEPNEAR 65 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~~~~-~-s~~pftT~~p~~G~ 65 (374)
.+..++|+||||||||||+++|++.... . ...+.||..|..|.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge 48 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDE 48 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---C
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccc
Confidence 3567999999999999999999997431 2 45667777777664
No 297
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.09 E-value=1.2e-06 Score=81.01 Aligned_cols=64 Identities=25% Similarity=0.277 Sum_probs=40.0
Q ss_pred ccccccCC-ceEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhh
Q 017295 17 ILGRFSSH-LKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHD 94 (374)
Q Consensus 17 vL~~i~~~-~~vgLvG~nGaGKSTL~n~Ltg~~~-~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D 94 (374)
+++.+... .+++++|.||+|||||+|.|+|... .+++.|++|.... .+.+. ..+++.|
T Consensus 91 L~~~l~~~~~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~~------------------~~~~l~D 150 (262)
T 3cnl_A 91 LKKLSFDRLARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQ--WFSLE------------------NGVKILD 150 (262)
T ss_dssp HHHHCCCTTCEEEEEESTTSSHHHHHHHHHTTCC----------CCSC--EEECT------------------TSCEEES
T ss_pred HHHHHHHhhhheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceE--EEEeC------------------CCEEEEE
Confidence 44444443 5899999999999999999999876 5689999987653 23322 1278899
Q ss_pred Hhhhhc
Q 017295 95 IAGLVR 100 (374)
Q Consensus 95 ~~gl~~ 100 (374)
+||+..
T Consensus 151 tpG~~~ 156 (262)
T 3cnl_A 151 TPGILY 156 (262)
T ss_dssp SCEECC
T ss_pred CCCccc
Confidence 999863
No 298
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.08 E-value=7.9e-07 Score=80.14 Aligned_cols=50 Identities=18% Similarity=0.119 Sum_probs=25.4
Q ss_pred ccccccC----CceEEEEcCCCCcHHHHHHHHH-cCCCCC-CCCCCcccCCceeEE
Q 017295 17 ILGRFSS----HLKIGIVGLPNVGKSTLFNTLT-KLAIPA-ENFPFCTIEPNEARV 66 (374)
Q Consensus 17 vL~~i~~----~~~vgLvG~nGaGKSTL~n~Lt-g~~~~~-s~~pftT~~p~~G~i 66 (374)
..+++++ |..+||+||||||||||+++|+ |....+ ...+.+|..|..|.+
T Consensus 16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~ 71 (231)
T 3lnc_A 16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK 71 (231)
T ss_dssp ------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC
T ss_pred ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc
Confidence 3445554 5679999999999999999999 984322 334445556665543
No 299
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.08 E-value=4.3e-07 Score=88.17 Aligned_cols=58 Identities=28% Similarity=0.418 Sum_probs=41.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCC-------CCCCCCCCcccCCceeEEEeCCcchhhhhhhccCCCCccccchHhhH
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKLA-------IPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDI 95 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~~-------~~~s~~pftT~~p~~G~i~~~g~~~~~l~~~~~~~~~~~~~~~v~D~ 95 (374)
.+..++++|.+|+|||||+|+|+|.. +.++++|+||..+..+ .+.+ .+.++|+
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~--~~~~------------------~~~liDt 218 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDI--PLDE------------------ESSLYDT 218 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEE--ESSS------------------SCEEEEC
T ss_pred ccceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEE--EecC------------------CeEEEeC
Confidence 35679999999999999999999973 2358999999876543 3321 2689999
Q ss_pred hhhhc
Q 017295 96 AGLVR 100 (374)
Q Consensus 96 ~gl~~ 100 (374)
||+..
T Consensus 219 PG~~~ 223 (368)
T 3h2y_A 219 PGIIN 223 (368)
T ss_dssp CCBCC
T ss_pred CCcCc
Confidence 99854
No 300
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.07 E-value=1.2e-06 Score=82.55 Aligned_cols=44 Identities=23% Similarity=0.211 Sum_probs=32.2
Q ss_pred cccccCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEe---CCcch
Q 017295 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNI---PDERF 73 (374)
Q Consensus 18 L~~i~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~---~g~~~ 73 (374)
|..+-.+..++|+|+||||||||+|+|+ . ..|.+|.|.+ .|..+
T Consensus 159 L~~~l~G~i~~l~G~sG~GKSTLln~l~-~-----------~~~~~G~i~~~~~~G~~~ 205 (302)
T 2yv5_A 159 LVDYLEGFICILAGPSGVGKSSILSRLT-G-----------EELRTQEVSEKTERGRHT 205 (302)
T ss_dssp HHHHTTTCEEEEECSTTSSHHHHHHHHH-S-----------CCCCCSCC---------C
T ss_pred HHhhccCcEEEEECCCCCCHHHHHHHHH-H-----------hhCcccccccccCCCCCc
Confidence 4444557789999999999999999999 8 6788899988 66554
No 301
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.07 E-value=1.5e-06 Score=83.74 Aligned_cols=37 Identities=27% Similarity=0.179 Sum_probs=28.8
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccC-CceeEEEeC
Q 017295 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE-PNEARVNIP 69 (374)
Q Consensus 22 ~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~-p~~G~i~~~ 69 (374)
-.+..++|+|+||||||||+|+|+|. .. |..|.|.+.
T Consensus 213 ~~G~~~~lvG~sG~GKSTLln~L~g~-----------~~~~~~G~I~~~ 250 (358)
T 2rcn_A 213 LTGRISIFAGQSGVGKSSLLNALLGL-----------QNEILTNDVSNV 250 (358)
T ss_dssp HTTSEEEEECCTTSSHHHHHHHHHCC-----------SSCCCCC-----
T ss_pred cCCCEEEEECCCCccHHHHHHHHhcc-----------ccccccCCcccc
Confidence 35678999999999999999999999 66 888888775
No 302
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.06 E-value=3.9e-06 Score=85.17 Aligned_cols=26 Identities=19% Similarity=0.418 Sum_probs=22.6
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHcC
Q 017295 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 22 ~~~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
....+|+|+|.+|||||||++.|++.
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~ 36 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLF 36 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhh
Confidence 34467999999999999999999975
No 303
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.04 E-value=1.6e-06 Score=79.03 Aligned_cols=35 Identities=23% Similarity=0.208 Sum_probs=21.0
Q ss_pred ccccccccccCCc----eEEEEcCCCCcHHHHHHHHHcC
Q 017295 13 AERPILGRFSSHL----KIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 13 ~~~~vL~~i~~~~----~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
+.+.+|+++++.. .+||+|+||||||||+++|+|.
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4667899988754 5999999999999999999996
No 304
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.04 E-value=1.2e-06 Score=88.82 Aligned_cols=51 Identities=18% Similarity=0.088 Sum_probs=42.9
Q ss_pred cccccccccccC-----CceEEEEcCCCCcHHHHHHH--HHcCCCCCCCCCCcccCCceeEEEeCCcch
Q 017295 12 PAERPILGRFSS-----HLKIGIVGLPNVGKSTLFNT--LTKLAIPAENFPFCTIEPNEARVNIPDERF 73 (374)
Q Consensus 12 ~~~~~vL~~i~~-----~~~vgLvG~nGaGKSTL~n~--Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~ 73 (374)
+.+..+|+++++ |..++|+|+||||||||+++ ++|+ ..|..|.|++.+.+.
T Consensus 22 ~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl-----------~~~~~g~i~v~g~~~ 79 (525)
T 1tf7_A 22 RTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGI-----------IEFDEPGVFVTFEET 79 (525)
T ss_dssp CCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHH-----------HHHCCCEEEEESSSC
T ss_pred cCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHH-----------HhCCCCEEEEEEeCC
Confidence 346778888887 34599999999999999999 7898 777899999988763
No 305
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.02 E-value=1.5e-06 Score=93.33 Aligned_cols=34 Identities=15% Similarity=0.130 Sum_probs=29.0
Q ss_pred cccccccccCC----ceEEEEcCCCCcHHHHHHHHHcC
Q 017295 14 ERPILGRFSSH----LKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 14 ~~~vL~~i~~~----~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
++.|+++++++ ..++|+|||||||||||+++++.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 46788888865 45999999999999999999754
No 306
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.02 E-value=2.4e-06 Score=86.35 Aligned_cols=39 Identities=31% Similarity=0.480 Sum_probs=35.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcc
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~ 72 (374)
.+..++|+|+||||||||+++|+|. +.|+.|.|.+.|..
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~-----------i~~~~giitied~~ 297 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMF-----------IPPDAKVVSIEDTR 297 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGG-----------SCTTCCEEEEESSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh-----------CCCCCCEEEEcCcc
Confidence 4566999999999999999999999 88999999998764
No 307
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.01 E-value=2.1e-07 Score=84.23 Aligned_cols=37 Identities=16% Similarity=0.207 Sum_probs=28.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcch
Q 017295 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~ 73 (374)
.++|+|||||||||||++|+|. +.|++|.|.++|.++
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~-----------~~~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTA-----------LIPDLTLLHFRNTTE 65 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHH-----------HSCCTTTC-------
T ss_pred EEEEECCCCCCHHHHHHHHhcc-----------cccCCCeEEECCEEc
Confidence 4799999999999999999999 889999999888765
No 308
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.01 E-value=2.3e-06 Score=74.32 Aligned_cols=23 Identities=43% Similarity=0.657 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcC
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
+.++|+||||||||||+++|+|.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999998
No 309
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.01 E-value=6.1e-07 Score=92.29 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=16.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcC
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
.+++|+|..|+|||||++.|+..
T Consensus 5 rnI~IiGh~d~GKTTLi~rLl~~ 27 (599)
T 3cb4_D 5 RNFSIIAHIDHGKSTLSDRIIQI 27 (599)
T ss_dssp EEEEEECCC----CCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 35999999999999999999864
No 310
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.01 E-value=1.4e-06 Score=83.85 Aligned_cols=46 Identities=24% Similarity=0.343 Sum_probs=35.3
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCce----eE-EEeCCcch
Q 017295 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNE----AR-VNIPDERF 73 (374)
Q Consensus 19 ~~i~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~----G~-i~~~g~~~ 73 (374)
..+..|..++|+|+||||||||++.|++... ..|+. |. +++++...
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~---------~~~~~Gg~~G~vi~i~~e~~ 176 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQ---------LPPEEGGLNGSVIWIDTENT 176 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTT---------SCGGGTSCSCEEEEEESSSC
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhc---------cchhcCCCCCeEEEEeCCCC
Confidence 3556677799999999999999999999821 25565 57 78877653
No 311
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.00 E-value=1.6e-06 Score=86.63 Aligned_cols=42 Identities=24% Similarity=0.288 Sum_probs=35.7
Q ss_pred ccCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcch
Q 017295 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73 (374)
Q Consensus 21 i~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~ 73 (374)
+..+..++|+|+||||||||+++|+|. +.|+.|.|.+.+.+.
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgl-----------l~~~~G~V~l~g~D~ 331 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQ-----------FEQQGKSVMLAAGDT 331 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHH-----------HHHTTCCEEEECCCT
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHH-----------hhhcCCeEEEecCcc
Confidence 344667999999999999999999999 778899999865543
No 312
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.00 E-value=4.3e-05 Score=79.67 Aligned_cols=27 Identities=26% Similarity=0.249 Sum_probs=23.8
Q ss_pred ccCCceEEEEcCCCCcHHHHHHHHHcC
Q 017295 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 21 i~~~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
+..+.+++|+|++|+|||||++.|++.
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~ 32 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYK 32 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHh
Confidence 345677999999999999999999976
No 313
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.99 E-value=1.7e-07 Score=101.99 Aligned_cols=58 Identities=12% Similarity=-0.072 Sum_probs=39.0
Q ss_pred CCCCchhHHHHHHHHHhhcHHHH-HHHHHHHHHHHHc-cCc-----cchHHHHHHHHHHHHHHhCCCce
Q 017295 120 SVDPVRDLEVISAELRLKDIEFM-ERRIEDVEKSMKR-SND-----KQLKIEHELCQRVKAWLQDGKDV 181 (374)
Q Consensus 120 ~~dP~~~l~ilde~l~~~D~~~~-~~~~~~i~~~~~~-~~~-----H~~~~~~~~~d~v~~~L~~G~iv 181 (374)
+.+| .+.++|||+.+.|.... ...+..+..+.++ +.+ |+.+.+..+++++ .++ +|++.
T Consensus 866 a~~~--sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~-~v~-~g~~~ 930 (1022)
T 2o8b_B 866 ATAH--SLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNV-AVR-LGHMA 930 (1022)
T ss_dssp CCTT--CEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCS-SEE-EEEEE
T ss_pred CCCC--cEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcc-eee-cCeEE
Confidence 3456 88888999999997763 4456777776654 443 9988877777766 333 45544
No 314
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.97 E-value=3.4e-06 Score=73.98 Aligned_cols=26 Identities=23% Similarity=0.226 Sum_probs=23.8
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHcC
Q 017295 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 22 ~~~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
..|..+||+||||||||||+++|+|.
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 35678999999999999999999998
No 315
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=97.95 E-value=1.1e-05 Score=84.61 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=20.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHc
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTK 46 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg 46 (374)
-.+|+|+|.+|+|||||++.|+.
T Consensus 12 ~~~I~IvG~~~aGKTTL~~~Ll~ 34 (691)
T 1dar_A 12 LRNIGIAAHIDAGKTTTTERILY 34 (691)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999999983
No 316
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.94 E-value=2.7e-06 Score=80.58 Aligned_cols=27 Identities=37% Similarity=0.413 Sum_probs=25.5
Q ss_pred ccCCceEEEEcCCCCcHHHHHHHHHcC
Q 017295 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 21 i~~~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
+..+..+||+|+||||||||+++|+|.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 677888999999999999999999999
No 317
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=97.93 E-value=4.8e-06 Score=90.53 Aligned_cols=24 Identities=33% Similarity=0.653 Sum_probs=21.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcC
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
..+|+++|.+|+|||||++.|++.
T Consensus 296 ~lnIvIIGhvDvGKSTLInrLt~~ 319 (1289)
T 3avx_A 296 HVNVGTIGHVDHGKTTLTAAITTV 319 (1289)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Confidence 456999999999999999999974
No 318
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.93 E-value=1.7e-06 Score=74.84 Aligned_cols=38 Identities=26% Similarity=0.350 Sum_probs=30.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCc---eeEEEeCCcch
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN---EARVNIPDERF 73 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~---~G~i~~~g~~~ 73 (374)
..++|+|++|||||||+++|+|. ++|. .|.|.+++.++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~-----------~~~~g~~~G~I~~dg~~i 43 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI-----------LRERGLRVAVVKRHAHGD 43 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH-----------HHHTTCCEEEEEC-----
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-----------hhhcCCceEEEEEcCccc
Confidence 36899999999999999999999 7787 89999988663
No 319
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.90 E-value=7.1e-06 Score=72.76 Aligned_cols=43 Identities=26% Similarity=0.224 Sum_probs=33.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCC-C-CCCCCcccCCceeE
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIP-A-ENFPFCTIEPNEAR 65 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~~~~-~-s~~pftT~~p~~G~ 65 (374)
.+..++|+||||||||||++.|++.... . ...+.+|.+|..|.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e 51 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGE 51 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTC
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcc
Confidence 4667999999999999999999998542 2 45566777776664
No 320
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.87 E-value=2.2e-06 Score=82.91 Aligned_cols=29 Identities=28% Similarity=0.425 Sum_probs=27.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCce
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNE 63 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~ 63 (374)
+.+++|+|+||||||||+++|+|. +.|+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl-----------~~~~~ 198 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV-----------FNTTS 198 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH-----------TTCEE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH-----------hCCCc
Confidence 678999999999999999999999 77887
No 321
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.87 E-value=4.6e-06 Score=82.17 Aligned_cols=46 Identities=20% Similarity=0.219 Sum_probs=37.3
Q ss_pred ccccc--cCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcch
Q 017295 17 ILGRF--SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73 (374)
Q Consensus 17 vL~~i--~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~ 73 (374)
+|+++ ..+..++|+||||||||||+++|+|. +.|+.|.|.+.+.++
T Consensus 158 ~L~~l~~~~ggii~I~GpnGSGKTTlL~allg~-----------l~~~~g~I~~~ed~i 205 (418)
T 1p9r_A 158 NFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQE-----------LNSSERNILTVEDPI 205 (418)
T ss_dssp HHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHH-----------HCCTTSCEEEEESSC
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHHHHHhh-----------cCCCCCEEEEecccc
Confidence 44443 34556999999999999999999999 788899998876554
No 322
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.86 E-value=9.5e-06 Score=71.13 Aligned_cols=27 Identities=26% Similarity=0.229 Sum_probs=24.2
Q ss_pred ccCCceEEEEcCCCCcHHHHHHHHHcC
Q 017295 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 21 i~~~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
+..+..++|+|+||||||||+++|++.
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 456778999999999999999999998
No 323
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.83 E-value=4.8e-06 Score=72.35 Aligned_cols=35 Identities=26% Similarity=0.202 Sum_probs=28.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcc
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~ 72 (374)
+..++|+|+||||||||+++|++. ..|.+.+++..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~--------------~~g~~~i~~d~ 36 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ--------------LDNSAYIEGDI 36 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH--------------SSSEEEEEHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc--------------cCCeEEEcccc
Confidence 457899999999999999999863 35777776543
No 324
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.81 E-value=1.8e-07 Score=94.97 Aligned_cols=28 Identities=21% Similarity=0.230 Sum_probs=25.5
Q ss_pred cccCCceEEEEcCCCCcHHHHHHHHHcC
Q 017295 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 20 ~i~~~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
.+..|..++|+|+||||||||+++++|.
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 4667778999999999999999999998
No 325
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.78 E-value=9.8e-06 Score=71.56 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=23.3
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHcC
Q 017295 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 22 ~~~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
..+..+||+|+||||||||+++|+|.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999997
No 326
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.78 E-value=5.5e-06 Score=75.34 Aligned_cols=36 Identities=22% Similarity=0.308 Sum_probs=30.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHH---cCCCCCCCCCCcccCCceeEEEeCC
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLT---KLAIPAENFPFCTIEPNEARVNIPD 70 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Lt---g~~~~~s~~pftT~~p~~G~i~~~g 70 (374)
...++|+|+||||||||+++|+ |. ..|+.|.+.+.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~-----------~~~~~G~i~~~~ 65 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGL-----------QHLSSGHFLREN 65 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCC-----------CCEEHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCC-----------eEecHHHHHHHH
Confidence 3679999999999999999999 98 667888776543
No 327
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.77 E-value=9e-06 Score=71.47 Aligned_cols=35 Identities=11% Similarity=0.182 Sum_probs=29.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcc
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~ 72 (374)
.+..++|+|+||||||||+++|++. + |.+.+++..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~-----------~----g~~~i~~d~ 62 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADE-----------T----GLEFAEADA 62 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH-----------H----CCEEEEGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh-----------h----CCeEEcccc
Confidence 4567999999999999999999997 3 777776644
No 328
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.75 E-value=4.9e-06 Score=76.20 Aligned_cols=41 Identities=17% Similarity=0.125 Sum_probs=31.3
Q ss_pred ccccccc-CCceEEEEcCCCCcHHHHHHHHH---cCCCCCCCCCCcccCCceeEEE
Q 017295 16 PILGRFS-SHLKIGIVGLPNVGKSTLFNTLT---KLAIPAENFPFCTIEPNEARVN 67 (374)
Q Consensus 16 ~vL~~i~-~~~~vgLvG~nGaGKSTL~n~Lt---g~~~~~s~~pftT~~p~~G~i~ 67 (374)
.++.... .+..|+|+|+|||||||++++|+ |. ..|+.|.+.
T Consensus 18 ~~~~~m~~~g~~I~I~G~~GsGKSTl~k~La~~Lg~-----------~~~d~g~i~ 62 (252)
T 4e22_A 18 LERPHMTAIAPVITVDGPSGAGKGTLCKALAESLNW-----------RLLDSGAIY 62 (252)
T ss_dssp -----CTTTSCEEEEECCTTSSHHHHHHHHHHHTTC-----------EEEEHHHHH
T ss_pred hhhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhcCC-----------CcCCCCcee
Confidence 4555553 46789999999999999999999 88 668888887
No 329
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.72 E-value=1.3e-05 Score=74.40 Aligned_cols=46 Identities=11% Similarity=0.152 Sum_probs=35.0
Q ss_pred ccccccccCCce--EEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcch
Q 017295 15 RPILGRFSSHLK--IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73 (374)
Q Consensus 15 ~~vL~~i~~~~~--vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~ 73 (374)
..+|++++.... ++|+||||||||||+++|+|. ..+ +.+.+.|.++
T Consensus 33 ~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~-----------~~~--~~i~i~g~~l 80 (274)
T 2x8a_A 33 PDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANE-----------SGL--NFISVKGPEL 80 (274)
T ss_dssp HHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHH-----------TTC--EEEEEETTTT
T ss_pred HHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHH-----------cCC--CEEEEEcHHH
Confidence 345666654332 999999999999999999998 444 6788877654
No 330
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.69 E-value=1e-05 Score=68.09 Aligned_cols=31 Identities=23% Similarity=0.157 Sum_probs=27.4
Q ss_pred cccccccCCceEEEEcCCCCcHHHHHHHHHcC
Q 017295 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 16 ~vL~~i~~~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
.+|.++ .+..++|+|+||+|||||+++|++.
T Consensus 29 ~~l~~~-~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 29 YVLRHK-HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp HHCCCC-CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred HHHHhc-CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 456666 6778999999999999999999998
No 331
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.69 E-value=6.2e-06 Score=78.24 Aligned_cols=45 Identities=20% Similarity=0.318 Sum_probs=32.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcch
Q 017295 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~ 73 (374)
.++|+|+||||||||+|.|+|... .+-..-+.|+.|.|.++|..+
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~~---~~~~aVi~~d~G~i~idg~~l 50 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQH---GYKIAVIENEFGEVSVDDQLI 50 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSCC---CCCEEEECSSCCSCCEEEEEE
T ss_pred EEEEEecCCCCHHHHHHHHHhhcC---CCcEEEEEecCcccCccHHHH
Confidence 489999999999999999999820 000001257888888877654
No 332
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.64 E-value=1.4e-05 Score=74.58 Aligned_cols=44 Identities=14% Similarity=0.040 Sum_probs=34.1
Q ss_pred cccccccccC----CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCcee-EEEe
Q 017295 14 ERPILGRFSS----HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEA-RVNI 68 (374)
Q Consensus 14 ~~~vL~~i~~----~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G-~i~~ 68 (374)
+..+|++++. |..++|+|+||||||||++.|+|. ..|..| .|.+
T Consensus 21 g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~-----------~~~~~G~~v~~ 69 (296)
T 1cr0_A 21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ-----------WGTAMGKKVGL 69 (296)
T ss_dssp SCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHH-----------HHHTSCCCEEE
T ss_pred CHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHH-----------HHHHcCCeEEE
Confidence 4456666654 556999999999999999999998 667767 4543
No 333
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.60 E-value=4.1e-05 Score=68.71 Aligned_cols=45 Identities=18% Similarity=0.197 Sum_probs=34.5
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCC-----ceeEEEeCCcc
Q 017295 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP-----NEARVNIPDER 72 (374)
Q Consensus 19 ~~i~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p-----~~G~i~~~g~~ 72 (374)
+.+..+..++|+|+||||||||++.|++.-. ..| ..|.+++.+..
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~---------~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQ---------LPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTT---------SCGGGTCCSSEEEEEESSS
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHh---------CchhcCCCCCeEEEEECCC
Confidence 4677888899999999999999999999311 223 46778776643
No 334
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.60 E-value=9.2e-06 Score=71.42 Aligned_cols=26 Identities=35% Similarity=0.424 Sum_probs=23.6
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHcC
Q 017295 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 22 ~~~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
..+..++|+|+||||||||.++|++.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34677999999999999999999998
No 335
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.57 E-value=1.7e-05 Score=69.91 Aligned_cols=39 Identities=31% Similarity=0.436 Sum_probs=31.7
Q ss_pred ccCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCC
Q 017295 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD 70 (374)
Q Consensus 21 i~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g 70 (374)
...+..++|+|+||||||||+++|++. +.+..|.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~-----------~~~~~~~v~~~~ 57 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQT-----------LREQGISVCVFH 57 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHH-----------HHHTTCCEEEEE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHH-----------HhhcCCeEEEec
Confidence 345678999999999999999999998 656667776544
No 336
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.57 E-value=3.3e-05 Score=66.43 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 017295 26 KIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
..+|+|+||||||||+++|.+.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999987
No 337
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.56 E-value=3.5e-05 Score=65.59 Aligned_cols=25 Identities=32% Similarity=0.317 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcC
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
++..|+|+|+||||||||.++|++.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999997
No 338
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.53 E-value=3e-05 Score=67.77 Aligned_cols=45 Identities=27% Similarity=0.201 Sum_probs=36.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCC-C-CCCCCcccCCceeEEEeCCcc
Q 017295 26 KIGIVGLPNVGKSTLFNTLTKLAIP-A-ENFPFCTIEPNEARVNIPDER 72 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Ltg~~~~-~-s~~pftT~~p~~G~i~~~g~~ 72 (374)
.|.|+||+|||||||++.|...... . -..+.||+.|-.|++ +|.+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~--~G~d 49 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKD 49 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCC--BTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCc--CCce
Confidence 3789999999999999999866542 3 578999999999965 4544
No 339
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.47 E-value=2.3e-05 Score=67.42 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcC
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
.+..++|+||||+|||||+++|++.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4677999999999999999999998
No 340
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.45 E-value=5e-05 Score=80.18 Aligned_cols=34 Identities=21% Similarity=0.218 Sum_probs=30.8
Q ss_pred cccccccccC-CceEEEEcCCCCcHHHHHHHHHcC
Q 017295 14 ERPILGRFSS-HLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 14 ~~~vL~~i~~-~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
++.+++++++ +..++|+||||||||||+|+|+|.
T Consensus 565 ~~~vl~disl~g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 565 TEFVPNDLEMAHELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCCCCEEEEESSCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CceEeeeccCCCcEEEEECCCCCChHHHHHHHHhh
Confidence 4678899988 678999999999999999999997
No 341
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.39 E-value=3.9e-05 Score=78.09 Aligned_cols=42 Identities=24% Similarity=0.264 Sum_probs=34.7
Q ss_pred cccCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCcee-EEE-eCCcc
Q 017295 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEA-RVN-IPDER 72 (374)
Q Consensus 20 ~i~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G-~i~-~~g~~ 72 (374)
.+..+..++|+|+||||||||+++|++. +.|..| .+. +++..
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~-----------L~~~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAAR-----------LMEMGGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHH-----------HHTTCSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHh-----------hcccCCceEEEECCcH
Confidence 3567888999999999999999999999 778886 564 66643
No 342
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.36 E-value=5.5e-05 Score=66.59 Aligned_cols=45 Identities=18% Similarity=0.146 Sum_probs=31.8
Q ss_pred ccCCceEEEEcCCCCcHHHHHHHHHcCCCC-C-CCCCCcccCCceeE
Q 017295 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIP-A-ENFPFCTIEPNEAR 65 (374)
Q Consensus 21 i~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~-~-s~~pftT~~p~~G~ 65 (374)
...+..++|+|+||||||||.+.|...... . -..+.||++|..|.
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e 55 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKE 55 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCC
Confidence 345667999999999999999999876321 1 23345666665544
No 343
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.36 E-value=0.00029 Score=73.88 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=20.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHc
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTK 46 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg 46 (374)
-.+|+|+|..|+|||||++.|+.
T Consensus 10 ~~~I~IiG~~~~GKTTL~~~Ll~ 32 (704)
T 2rdo_7 10 YRNIGISAHIDAGKTTTTERILF 32 (704)
T ss_pred ccEEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999999964
No 344
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.35 E-value=9.6e-05 Score=63.05 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=22.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcC
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
+..++|+|+||||||||.++|++.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 567999999999999999999986
No 345
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.35 E-value=7e-05 Score=67.34 Aligned_cols=27 Identities=26% Similarity=0.287 Sum_probs=24.3
Q ss_pred ccCCceEEEEcCCCCcHHHHHHHHHcC
Q 017295 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 21 i~~~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
...|..++|+|+||||||||+++|++.
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 456788999999999999999999986
No 346
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.35 E-value=7.7e-05 Score=70.77 Aligned_cols=22 Identities=50% Similarity=0.558 Sum_probs=21.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 017295 26 KIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
.+||+|+||||||||+++|.+.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999998
No 347
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.32 E-value=0.00013 Score=64.13 Aligned_cols=31 Identities=42% Similarity=0.553 Sum_probs=27.5
Q ss_pred ccccccCCceEEEEcCCCCcHHHHHHHHHcC
Q 017295 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 17 vL~~i~~~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
.+..+..+..|+|+|+||||||||.+.|++.
T Consensus 14 ~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 14 LVPRGSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCCSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4556777888999999999999999999987
No 348
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.28 E-value=7.7e-05 Score=67.80 Aligned_cols=44 Identities=16% Similarity=0.271 Sum_probs=32.7
Q ss_pred cccccccCCce--EEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcc
Q 017295 16 PILGRFSSHLK--IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72 (374)
Q Consensus 16 ~vL~~i~~~~~--vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~ 72 (374)
.++++++.... +.|+||||+|||||+++|++. . ..|.+.+.+.+
T Consensus 39 ~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~-----------~--~~~~i~~~~~~ 84 (254)
T 1ixz_A 39 SRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE-----------A--RVPFITASGSD 84 (254)
T ss_dssp HHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHH-----------T--TCCEEEEEHHH
T ss_pred HHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHH-----------h--CCCEEEeeHHH
Confidence 35555544332 899999999999999999997 3 26777776644
No 349
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.27 E-value=0.00011 Score=64.29 Aligned_cols=34 Identities=18% Similarity=0.118 Sum_probs=20.7
Q ss_pred cccccccccCCc----eEEEEcCCCCcHHHHHHHHHcC
Q 017295 14 ERPILGRFSSHL----KIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 14 ~~~vL~~i~~~~----~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
....++++++.+ .|+|+|+|||||||+.+.|++.
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 345677777654 5999999999999999999976
No 350
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.26 E-value=7.4e-05 Score=69.03 Aligned_cols=44 Identities=16% Similarity=0.267 Sum_probs=32.7
Q ss_pred cccccccCCc--eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcc
Q 017295 16 PILGRFSSHL--KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72 (374)
Q Consensus 16 ~vL~~i~~~~--~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~ 72 (374)
.++++++... -++|+||||+|||||+++|++. . ..|.+.+++.+
T Consensus 63 ~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~-----------~--~~~~i~~~~~~ 108 (278)
T 1iy2_A 63 SRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE-----------A--RVPFITASGSD 108 (278)
T ss_dssp HHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHH-----------T--TCCEEEEEHHH
T ss_pred HHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHH-----------c--CCCEEEecHHH
Confidence 3455554433 2899999999999999999997 3 26777776644
No 351
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.22 E-value=0.00017 Score=64.13 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=21.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcC
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
...|+|+|+|||||||+.++|++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999975
No 352
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.21 E-value=0.00014 Score=77.12 Aligned_cols=34 Identities=24% Similarity=0.147 Sum_probs=29.4
Q ss_pred cccccccccCC---ceEEEEcCCCCcHHHHHHHHHcC
Q 017295 14 ERPILGRFSSH---LKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 14 ~~~vL~~i~~~---~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
++.++++++++ ..++|+||||||||||+|+|+|.
T Consensus 594 ~~~vlndisl~~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 594 EPFIANPLNLSPQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SCCCCEEEEECSSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceeeecccccCCCcEEEEECCCCCChHHHHHHHHHH
Confidence 45688888764 46999999999999999999997
No 353
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.15 E-value=0.00022 Score=62.50 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcC
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
..|||+|+|||||||+.++|++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHC
Confidence 36899999999999999999975
No 354
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.14 E-value=0.00022 Score=65.92 Aligned_cols=33 Identities=21% Similarity=0.119 Sum_probs=29.8
Q ss_pred ccccccccCCceEEEEcCCCCcHHHHHHHHHcC
Q 017295 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 15 ~~vL~~i~~~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
..+|+.+..+..++|+|+||||||||++.|++.
T Consensus 21 d~~lggl~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 21 DYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp CEEETTEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred heeECCccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 457788888999999999999999999999985
No 355
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.11 E-value=0.00022 Score=62.38 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 017295 26 KIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
.|+|+|+|||||||+.+.|++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFREL 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHHHC
Confidence 6899999999999999999984
No 356
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.11 E-value=0.00026 Score=62.30 Aligned_cols=28 Identities=25% Similarity=0.248 Sum_probs=25.5
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHc
Q 017295 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTK 46 (374)
Q Consensus 19 ~~i~~~~~vgLvG~nGaGKSTL~n~Ltg 46 (374)
+.+..+..++|+|+||||||||++.|++
T Consensus 15 Ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 15 GGFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3677788899999999999999999997
No 357
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=97.05 E-value=0.00027 Score=68.26 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 017295 26 KIGIVGLPNVGKSTLFNTLTK 46 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Ltg 46 (374)
.++|+|+|||||||||++|+.
T Consensus 25 ~~~i~G~NGaGKTTll~ai~~ 45 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAISF 45 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999983
No 358
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.04 E-value=0.00016 Score=68.18 Aligned_cols=40 Identities=23% Similarity=0.321 Sum_probs=33.0
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcc
Q 017295 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72 (374)
Q Consensus 22 ~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~ 72 (374)
..+..++|+|+|||||||+++.|++. +.+..|.|.+.+.+
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~-----------l~~~g~kV~lv~~D 141 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKM-----------FVDEGKSVVLAAAD 141 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHH-----------HHHTTCCEEEEEEC
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHH-----------HHhcCCEEEEEccc
Confidence 34567999999999999999999998 66777788775544
No 359
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.02 E-value=0.00026 Score=70.02 Aligned_cols=44 Identities=11% Similarity=0.107 Sum_probs=32.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC---------------CCCCCCCCCcccCCceeEEEeC
Q 017295 26 KIGIVGLPNVGKSTLFNTLTKL---------------AIPAENFPFCTIEPNEARVNIP 69 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Ltg~---------------~~~~s~~pftT~~p~~G~i~~~ 69 (374)
.|+|+|++++|||||+|.|.|. ...+-+...||...+.|...+.
T Consensus 69 vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~ 127 (447)
T 3q5d_A 69 AVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWS 127 (447)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEES
T ss_pred EEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEec
Confidence 3999999999999999999975 2333222337777788887654
No 360
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.01 E-value=0.00034 Score=58.66 Aligned_cols=20 Identities=30% Similarity=0.419 Sum_probs=18.6
Q ss_pred eEEEEcCCCCcHHHHHHHHH
Q 017295 26 KIGIVGLPNVGKSTLFNTLT 45 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Lt 45 (374)
..+|+|||||||||++.+|.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 47999999999999999987
No 361
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=96.97 E-value=0.00015 Score=77.47 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcC
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
.+|+|+|.+|+|||||++.|++.
T Consensus 20 rnI~IiG~~~~GKTTL~~~Ll~~ 42 (842)
T 1n0u_A 20 RNMSVIAHVDHGKSTLTDSLVQR 42 (842)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 46999999999999999999875
No 362
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.95 E-value=0.00041 Score=67.21 Aligned_cols=27 Identities=26% Similarity=0.218 Sum_probs=23.6
Q ss_pred ccCCceEEEEcCCCCcHHHHHHHHHcC
Q 017295 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 21 i~~~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
+..+..++|+||||||||||+++|+|.
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 345567999999999999999999986
No 363
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.95 E-value=0.00049 Score=67.23 Aligned_cols=27 Identities=30% Similarity=0.336 Sum_probs=23.1
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHH
Q 017295 19 GRFSSHLKIGIVGLPNVGKSTLFNTLT 45 (374)
Q Consensus 19 ~~i~~~~~vgLvG~nGaGKSTL~n~Lt 45 (374)
+.+..+..++|+|+||||||||++.|+
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHH
Confidence 566777889999999999999999554
No 364
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.94 E-value=0.00038 Score=68.56 Aligned_cols=27 Identities=19% Similarity=0.311 Sum_probs=23.6
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHcCC
Q 017295 22 SSHLKIGIVGLPNVGKSTLFNTLTKLA 48 (374)
Q Consensus 22 ~~~~~vgLvG~nGaGKSTL~n~Ltg~~ 48 (374)
..+..++|+||||||||||+++|+++.
T Consensus 24 ~~~~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 24 GESNFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhh
Confidence 345679999999999999999999874
No 365
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.94 E-value=0.00025 Score=62.68 Aligned_cols=39 Identities=26% Similarity=0.273 Sum_probs=31.9
Q ss_pred ccCCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCcee--EEEeCC
Q 017295 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEA--RVNIPD 70 (374)
Q Consensus 21 i~~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G--~i~~~g 70 (374)
+..+..|.|+|++||||||+.+.|.+. +.|..| .+.+++
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~-----------l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQ-----------LVRDRRVHAYRLDG 62 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHH-----------HHHHHCCCEEEECH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHH-----------hccccCCcEEEECC
Confidence 456778999999999999999999987 656667 666653
No 366
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.94 E-value=0.00021 Score=67.01 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcC
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
.+..++++|+|||||||+++.|++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4667999999999999999999998
No 367
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.93 E-value=0.00022 Score=67.82 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=21.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcC
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
..++|+||||+|||||+++|+|.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999999999997
No 368
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.91 E-value=0.00028 Score=67.10 Aligned_cols=35 Identities=23% Similarity=0.307 Sum_probs=25.0
Q ss_pred EEEEcCCCCcHHHHHHHHHc-CCCCCCCCCCcccCCceeEEEeCCcc
Q 017295 27 IGIVGLPNVGKSTLFNTLTK-LAIPAENFPFCTIEPNEARVNIPDER 72 (374)
Q Consensus 27 vgLvG~nGaGKSTL~n~Ltg-~~~~~s~~pftT~~p~~G~i~~~g~~ 72 (374)
+.|.||||+|||||+++|++ + ..|..|.+.++|..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l-----------~~~~~g~i~~~~~~ 74 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESI-----------FGPGVYRLKIDVRQ 74 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH-----------SCTTCCC-------
T ss_pred EEEECCCCCCHHHHHHHHHHHH-----------cCCCCCeEEeccee
Confidence 89999999999999999999 5 45677777776644
No 369
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.81 E-value=0.00065 Score=58.12 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcC
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
.+..++|+|++||||||+.++|.+.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4667999999999999999999986
No 370
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.81 E-value=0.00054 Score=65.99 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 017295 26 KIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
.++|+|+||||||||+++|.+.
T Consensus 28 ~~~i~G~nG~GKttll~ai~~~ 49 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLLEAAYLA 49 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHHh
Confidence 5899999999999999999974
No 371
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.80 E-value=0.00062 Score=59.46 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcC
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
..|+|+|+||||||||.+.|++.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999976
No 372
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=96.80 E-value=0.0032 Score=45.69 Aligned_cols=55 Identities=24% Similarity=0.219 Sum_probs=46.4
Q ss_pred eeEEecCCCChhHhhhhcchhhhcceEEEEEecchhhhhcCChHHHhhcCcccccCCcceecCCCEEEEEeecC
Q 017295 296 KCWQIRRQTKAPQAAGTIHTDFERGFICAEVMKFDDLKELGSEPAVKAAGKYKQEGKTYVVQDGDIIFFKFNVS 369 (374)
Q Consensus 296 ~~~~i~~gsta~~~a~~IHsd~~~~f~~A~v~~~~d~~~~~~~~~~~~~g~~~~~g~dy~~~dgDii~~~~~~~ 369 (374)
+...+++|+|+.|+|..||+++.+..+-|+|= | +.+..++.+++||.|+|.-...
T Consensus 11 ~~~~~~~g~T~~dla~~i~~~l~~~~vaa~vN-----------------g--~lvdl~~~L~~~~~Veivt~~~ 65 (73)
T 2kmm_A 11 EIKRLPQGATALDFAYSLHSDLGDHCIGAKVN-----------------H--KLVPLSYVLNSGDQVEVLSSKS 65 (73)
T ss_dssp CEEEECTTCBHHHHHHHHCSHHHHTEEEEEET-----------------T--EECCTTCBCCSSSBEEEEECCC
T ss_pred CEEEcCCCCcHHHHHHHHhhccccceEEEEEC-----------------C--EEeCCCcCcCCCCEEEEEECCC
Confidence 46789999999999999999999988777642 4 6778899999999999976543
No 373
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.73 E-value=0.00053 Score=59.04 Aligned_cols=25 Identities=32% Similarity=0.574 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcC
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
.+..|.|+|+|||||||+.+.|+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4667999999999999999999987
No 374
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.72 E-value=0.0006 Score=62.30 Aligned_cols=34 Identities=24% Similarity=0.342 Sum_probs=28.0
Q ss_pred cccccccccC-------CceEEEEcCCCCcHHHHHHHHHcC
Q 017295 14 ERPILGRFSS-------HLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 14 ~~~vL~~i~~-------~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
+..+|+++++ +..|+|+|++||||||+.++|++.
T Consensus 31 ~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 31 EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp -CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHH
T ss_pred cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4567777753 556999999999999999999986
No 375
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.70 E-value=0.00081 Score=57.61 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcC
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
.+..|+|+|+|||||||+.+.|+..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3567999999999999999999854
No 376
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.68 E-value=0.00086 Score=68.14 Aligned_cols=36 Identities=22% Similarity=0.399 Sum_probs=31.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCC
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD 70 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g 70 (374)
+..++|+||||+|||||+++|++. ..+..|.+.+.+
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~-----------l~~~~~~i~~~~ 143 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKS-----------LGRKFVRISLGG 143 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHH-----------HTCEEEEECCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh-----------cCCCeEEEEecc
Confidence 556999999999999999999998 667777777665
No 377
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.67 E-value=0.00047 Score=65.34 Aligned_cols=40 Identities=18% Similarity=0.164 Sum_probs=33.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcch
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~ 73 (374)
.+..++++|+||+||||++..|++. +.+..|.|.+.+.++
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~-----------l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANY-----------YAELGYKVLIAAADT 143 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHH-----------HHHTTCCEEEEECCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH-----------HHHCCCeEEEEeCCC
Confidence 4556999999999999999999998 667778888766543
No 378
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.64 E-value=0.00049 Score=64.40 Aligned_cols=40 Identities=20% Similarity=0.118 Sum_probs=33.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcch
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~~ 73 (374)
.+..++++|+||+||||+...|++. ..+..|.|.+.|.++
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~-----------~~~~~~~v~l~~~d~ 136 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALY-----------YKGKGRRPLLVAADT 136 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHH-----------HHHTTCCEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH-----------HHHcCCeEEEecCCc
Confidence 4567999999999999999999998 667778888766553
No 379
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.62 E-value=0.00073 Score=63.88 Aligned_cols=26 Identities=31% Similarity=0.501 Sum_probs=22.2
Q ss_pred ccCCceEEEEcCCCCcHHHHHHHHHcC
Q 017295 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 21 i~~~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
++.+ ..+|+|+||||||||+.+|..+
T Consensus 22 ~~~g-~~~i~G~NGsGKS~ll~ai~~l 47 (322)
T 1e69_A 22 FSDR-VTAIVGPNGSGKSNIIDAIKWV 47 (322)
T ss_dssp CCSS-EEEEECCTTTCSTHHHHHHHHT
T ss_pred cCCC-cEEEECCCCCcHHHHHHHHHHH
Confidence 3445 6899999999999999999954
No 380
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.60 E-value=0.036 Score=54.56 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcC
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
...|.++|+|||||||+...|+..
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHH
Confidence 456999999999999999999854
No 381
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.57 E-value=0.0011 Score=58.43 Aligned_cols=20 Identities=30% Similarity=0.419 Sum_probs=18.3
Q ss_pred eEEEEcCCCCcHHHHHHHHH
Q 017295 26 KIGIVGLPNVGKSTLFNTLT 45 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Lt 45 (374)
..+|+|+|||||||++.+|.
T Consensus 25 ~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 47999999999999999886
No 382
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.57 E-value=0.0011 Score=55.80 Aligned_cols=22 Identities=32% Similarity=0.123 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 017295 26 KIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
.|+|.|++||||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999865
No 383
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.56 E-value=0.0012 Score=55.36 Aligned_cols=20 Identities=40% Similarity=0.522 Sum_probs=18.6
Q ss_pred ceEEEEcCCCCcHHHHHHHH
Q 017295 25 LKIGIVGLPNVGKSTLFNTL 44 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~L 44 (374)
+.|+|+|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 384
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.54 E-value=0.0013 Score=61.45 Aligned_cols=26 Identities=23% Similarity=0.064 Sum_probs=23.3
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHcC
Q 017295 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 22 ~~~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
..+..|||+|++|||||||.+.|.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999999998
No 385
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.51 E-value=0.0014 Score=56.36 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcC
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
..++|+|++|||||||++.|.+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 45899999999999999999986
No 386
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.51 E-value=0.0015 Score=55.35 Aligned_cols=22 Identities=32% Similarity=0.345 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHc
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTK 46 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg 46 (374)
..|.|.|+|||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4589999999999999999996
No 387
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.50 E-value=0.0015 Score=56.04 Aligned_cols=26 Identities=31% Similarity=0.367 Sum_probs=22.4
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHcC
Q 017295 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 22 ~~~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
+.+..|.|+|+|||||||+.+.|...
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999999864
No 388
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.50 E-value=0.0014 Score=58.87 Aligned_cols=28 Identities=21% Similarity=0.186 Sum_probs=24.7
Q ss_pred cccCCceEEEEcCCCCcHHHHHHHHHcC
Q 017295 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 20 ~i~~~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
....+..|+|.|+|||||||+.+.|+..
T Consensus 22 ~~~~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 22 SNAMSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred ecCCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3446677999999999999999999987
No 389
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.49 E-value=0.0012 Score=62.86 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=18.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 017295 26 KIGIVGLPNVGKSTLFNTLTK 46 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Ltg 46 (374)
..+|+||||||||||+.+|+.
T Consensus 25 ~~~i~G~NGsGKS~lleAi~~ 45 (339)
T 3qkt_A 25 INLIIGQNGSGKSSLLDAILV 45 (339)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999998853
No 390
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.46 E-value=0.0016 Score=56.46 Aligned_cols=22 Identities=41% Similarity=0.536 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 017295 26 KIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
.|+|+|++||||||+.+.|+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5899999999999999999975
No 391
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=96.44 E-value=0.0045 Score=62.88 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=20.9
Q ss_pred ccCCceEEEEcCCCCcHHHHHHHHH
Q 017295 21 FSSHLKIGIVGLPNVGKSTLFNTLT 45 (374)
Q Consensus 21 i~~~~~vgLvG~nGaGKSTL~n~Lt 45 (374)
++.-..|||||..++|||||.-.|.
T Consensus 28 ~~r~RNiaIiaHvdaGKTTLtE~lL 52 (548)
T 3vqt_A 28 AARRRTFAIISHPDAGKTTLTEKLL 52 (548)
T ss_dssp HHTEEEEEEECCTTSSHHHHHHHHH
T ss_pred ccccceEEEEeCCCCCHHHHHHHHH
Confidence 3444559999999999999999885
No 392
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.44 E-value=0.0018 Score=54.99 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=21.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcC
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
+..|.|.|++||||||+.+.|...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 356899999999999999999976
No 393
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.43 E-value=0.0015 Score=58.35 Aligned_cols=27 Identities=19% Similarity=0.311 Sum_probs=21.3
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHH
Q 017295 19 GRFSSHLKIGIVGLPNVGKSTLFNTLT 45 (374)
Q Consensus 19 ~~i~~~~~vgLvG~nGaGKSTL~n~Lt 45 (374)
+.+..|..++|+|+||||||||...++
T Consensus 18 gGl~~G~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 18 GGIPERNVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp TSEETTCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHH
Confidence 345667779999999999999955554
No 394
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.41 E-value=0.0017 Score=58.24 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=22.9
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHcC
Q 017295 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 22 ~~~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
..+..|+|+|+|||||||+.+.|++.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 44567999999999999999999974
No 395
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.41 E-value=0.0019 Score=64.92 Aligned_cols=32 Identities=22% Similarity=0.388 Sum_probs=25.2
Q ss_pred cccccccCCc--eEEEEcCCCCcHHHHHHHHHcC
Q 017295 16 PILGRFSSHL--KIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 16 ~vL~~i~~~~--~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
.++.+++... -+.|+||||+|||||+++|++.
T Consensus 54 ~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 54 SRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp GGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred hhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3455554333 2999999999999999999997
No 396
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.40 E-value=0.0021 Score=55.29 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=21.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcC
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
+..|+|+|++||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 456999999999999999999864
No 397
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.36 E-value=0.002 Score=55.10 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcC
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
+..|.|.|++||||||+.+.|+..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 356999999999999999999864
No 398
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.36 E-value=0.002 Score=56.92 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=21.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcC
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
...|+|.|++||||||+.+.|...
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~l 27 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFADL 27 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHc
Confidence 457999999999999999999864
No 399
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.34 E-value=0.0022 Score=65.87 Aligned_cols=38 Identities=18% Similarity=0.336 Sum_probs=29.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCce-eEEEeCCc
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNE-ARVNIPDE 71 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~-G~i~~~g~ 71 (374)
.+..+.|+||||+|||||+++|++. ..+.. |.+.+.+.
T Consensus 59 ~g~~vll~Gp~GtGKTtlar~ia~~-----------l~~~~~~~~~~~~~ 97 (604)
T 3k1j_A 59 QKRHVLLIGEPGTGKSMLGQAMAEL-----------LPTETLEDILVFPN 97 (604)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHHHT-----------SCCSSCEEEEEECC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhcc-----------CCcccCCeEEEeCC
Confidence 4556999999999999999999998 44544 56655443
No 400
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.34 E-value=0.0023 Score=55.50 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcC
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
.+..|+|.|++||||||+.+.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999976
No 401
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.25 E-value=0.0023 Score=56.21 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcC
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
+.|+|.|++||||||+.+.|+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999754
No 402
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.25 E-value=0.0023 Score=54.44 Aligned_cols=22 Identities=41% Similarity=0.487 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 017295 26 KIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
.|.|+|+|||||||+.+.|+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999875
No 403
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.22 E-value=0.0025 Score=56.11 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcC
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
+.|+|.|+|||||||+.+.|+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999754
No 404
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.18 E-value=0.0025 Score=54.46 Aligned_cols=24 Identities=46% Similarity=0.537 Sum_probs=21.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcC
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
...|+|+|+|||||||+-+.|+..
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999864
No 405
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.16 E-value=0.003 Score=54.95 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=21.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcC
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
+..|+|.|++||||||+.+.|+..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999999999875
No 406
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.16 E-value=0.0032 Score=54.91 Aligned_cols=25 Identities=32% Similarity=0.230 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcC
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
.+..|+|.|++||||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4667999999999999999999853
No 407
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.13 E-value=0.0021 Score=55.42 Aligned_cols=26 Identities=31% Similarity=0.308 Sum_probs=22.8
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHcC
Q 017295 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 22 ~~~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
++...|+|.|++||||||+.+.|+..
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 45567999999999999999999865
No 408
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.10 E-value=0.0033 Score=53.88 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=21.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcC
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
+..|+|.|+|||||||+.+.|+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 356999999999999999999854
No 409
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.08 E-value=0.0035 Score=53.87 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcC
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
.+..|+|+|++||||||+.+.|+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999864
No 410
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.08 E-value=0.0029 Score=54.11 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 017295 26 KIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
.|.|.|++||||||+.+.|...
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999875
No 411
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.05 E-value=0.0036 Score=53.48 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcC
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
...|.|+|++||||||+-+.|+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999865
No 412
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.05 E-value=0.0036 Score=54.17 Aligned_cols=23 Identities=39% Similarity=0.455 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcC
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
..|+|+|++||||||+.+.|+..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 45999999999999999999964
No 413
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.04 E-value=0.0042 Score=54.00 Aligned_cols=25 Identities=32% Similarity=0.531 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcC
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
.++.|+|+|++||||||+.+.|+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999999864
No 414
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.03 E-value=0.0037 Score=52.43 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcC
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
+.|+|.|++||||||+.+.|...
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999864
No 415
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.02 E-value=0.0039 Score=53.12 Aligned_cols=24 Identities=38% Similarity=0.440 Sum_probs=21.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcC
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
...|.|+|++||||||+.+.|+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 356899999999999999999854
No 416
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.02 E-value=0.0023 Score=58.11 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=22.9
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHcC
Q 017295 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 22 ~~~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
..+..+.|+|+|||||||+.+.|...
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34566999999999999999999986
No 417
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.02 E-value=0.0015 Score=57.12 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 017295 26 KIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
.|+|+|++||||||+.+.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999876
No 418
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.01 E-value=0.0038 Score=53.33 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=21.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcC
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
+...|+|.|++||||||+.+.|+..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3356999999999999999999864
No 419
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.00 E-value=0.0039 Score=54.43 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcC
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
.+..|+|.|++||||||+.+.|...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3567999999999999999999853
No 420
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.96 E-value=0.0043 Score=54.82 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=21.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcC
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
+..|.|+|++||||||+.+.|+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999865
No 421
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.96 E-value=0.0041 Score=56.09 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcC
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
...++|.|++||||||+.+.|+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999954
No 422
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.95 E-value=0.0041 Score=53.29 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 017295 26 KIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
.|+|.|++||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999863
No 423
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.94 E-value=0.0041 Score=53.51 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 017295 26 KIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
.|+|.|++||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999865
No 424
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.93 E-value=0.0022 Score=61.60 Aligned_cols=28 Identities=21% Similarity=0.199 Sum_probs=25.2
Q ss_pred cccCCceEEEEcCCCCcHHHHHHHHHcC
Q 017295 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 20 ~i~~~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
.+..+..+.|+|+||+|||||+..++..
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 6667778999999999999999999976
No 425
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.93 E-value=0.0043 Score=56.16 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcC
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
..+.|+|+||+|||||.++|++.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 34899999999999999999987
No 426
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.92 E-value=0.0036 Score=57.01 Aligned_cols=22 Identities=18% Similarity=0.107 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 017295 26 KIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
.+.|+|+||||||||-+.|++.
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 4799999999999999999875
No 427
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.91 E-value=0.0037 Score=55.11 Aligned_cols=50 Identities=6% Similarity=0.045 Sum_probs=32.9
Q ss_pred cCCEEEEEcCCCccccccccccHHHHHHHHHhh-CCCeEEEeeHHHHHHhcCC
Q 017295 202 AKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEH-GGEQIIPFSCALERNLADM 253 (374)
Q Consensus 202 ~kP~i~v~Nk~d~d~~~~~~~~~~~l~~~~~~~-~~~~~i~vSa~~e~~l~~l 253 (374)
.+|.++|+||+|.. .......+.+.+++... ++.+++++||+.+.++.++
T Consensus 164 ~~~~iiv~NK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l 214 (226)
T 2hf9_A 164 KTADLIVINKIDLA--DAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKV 214 (226)
T ss_dssp TTCSEEEEECGGGH--HHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHH
T ss_pred hcCCEEEEeccccC--chhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHH
Confidence 58999999999742 11112345555555433 2568999999998776544
No 428
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.91 E-value=0.0042 Score=55.18 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=21.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcC
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
...|.|+|++||||||+.+.|+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999854
No 429
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.89 E-value=0.0046 Score=52.04 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcC
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
..|+|.|++||||||+.+.|...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999864
No 430
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.85 E-value=0.0048 Score=53.56 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 017295 26 KIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
.|+|.|++||||||+.+.|+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6899999999999999999875
No 431
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.84 E-value=0.0045 Score=54.50 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 017295 26 KIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
.|+|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 432
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.83 E-value=0.0047 Score=54.65 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcC
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
...|.|+|++||||||+.+.|+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999999865
No 433
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.73 E-value=0.0051 Score=52.65 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 017295 26 KIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
.++|+|++|||||||++.|...
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999875
No 434
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.71 E-value=0.0062 Score=54.98 Aligned_cols=25 Identities=28% Similarity=0.270 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcC
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
....|+|.|+|||||||+.+.|+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999854
No 435
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.71 E-value=0.0058 Score=54.31 Aligned_cols=22 Identities=32% Similarity=0.244 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 017295 26 KIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
.|+|.|+|||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 436
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.65 E-value=0.0063 Score=53.71 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcC
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
++.|.|+|++||||||+.+.|+..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999865
No 437
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.63 E-value=0.0064 Score=53.69 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcC
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
+.+.|+|||||||+|.-+.|+..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999965
No 438
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.62 E-value=0.0058 Score=56.77 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcC
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
+..+.|.|+||||||||.+.|...
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 456999999999999999999865
No 439
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.62 E-value=0.0046 Score=52.59 Aligned_cols=23 Identities=35% Similarity=0.226 Sum_probs=16.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcC
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
..|.|.|+|||||||+.+.|...
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 56999999999999999999854
No 440
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.55 E-value=0.0024 Score=59.80 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=30.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcc
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~ 72 (374)
+..++++|+||+||||++..|++. ..+..+.+.+.+.+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~-----------~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF-----------YKKKGFKVGLVGAD 135 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH-----------HHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH-----------HHHCCCeEEEEecC
Confidence 557999999999999999999988 55556667664433
No 441
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.53 E-value=0.0081 Score=52.11 Aligned_cols=23 Identities=35% Similarity=0.359 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcC
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
..|+|.|++||||||+.+.|+..
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999854
No 442
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.51 E-value=0.0078 Score=54.86 Aligned_cols=23 Identities=48% Similarity=0.733 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcC
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
..|.|+|+|||||||+.+.|...
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999999863
No 443
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.49 E-value=0.008 Score=50.50 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 017295 26 KIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
.|+|.|++||||||+-+.|+..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
No 444
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.44 E-value=0.005 Score=60.47 Aligned_cols=39 Identities=21% Similarity=0.140 Sum_probs=31.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcccCCceeEEEeCCcc
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~~~~~s~~pftT~~p~~G~i~~~g~~ 72 (374)
.+..++++|+|||||||+...|++. +.+..+.|.+.+.+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~-----------l~~~g~~Vllvd~D 135 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALY-----------YKGKGRRPLLVAAD 135 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH-----------HHTTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH-----------HHHcCCeEEEeecc
Confidence 3556999999999999999999998 66777777765544
No 445
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.43 E-value=0.0051 Score=59.49 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcC
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
.+..+.|+|++|||||||++.|+..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHH
Confidence 3456999999999999999999987
No 446
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.41 E-value=0.0087 Score=55.73 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=23.1
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHcC
Q 017295 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 22 ~~~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
..+..+.|.||||+|||||.++|++.
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHH
Confidence 44556999999999999999999987
No 447
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.40 E-value=0.0081 Score=57.49 Aligned_cols=21 Identities=38% Similarity=0.634 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 017295 27 IGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 27 vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
++|+|+|||||||+.++|++.
T Consensus 27 i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 27 VILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999986
No 448
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.26 E-value=0.0099 Score=57.54 Aligned_cols=31 Identities=19% Similarity=0.301 Sum_probs=26.4
Q ss_pred ccccccCCceEEEEcCCCCcHHHHHHHHHcC
Q 017295 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 17 vL~~i~~~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
++-.+..|.+++|+|++|+|||||++.|++.
T Consensus 167 ~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 167 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp HHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred eeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 3445667888999999999999999999875
No 449
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.22 E-value=0.012 Score=52.53 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcC
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
...|.|+|++||||||+.+.|+..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999865
No 450
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=95.21 E-value=0.0088 Score=57.52 Aligned_cols=20 Identities=30% Similarity=0.589 Sum_probs=18.3
Q ss_pred eEEEEcCCCCcHHHHHHHHH
Q 017295 26 KIGIVGLPNVGKSTLFNTLT 45 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Lt 45 (374)
...|+|+|||||||+|.+|.
T Consensus 27 l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 27 IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 47999999999999999986
No 451
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.21 E-value=0.01 Score=51.79 Aligned_cols=24 Identities=38% Similarity=0.580 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcC
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
...|||.|.+||||||+-+.|...
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 345999999999999999999854
No 452
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.18 E-value=0.014 Score=52.05 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=21.7
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHcC
Q 017295 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 22 ~~~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
.....|.|+|||||||||.-+.|+..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34445889999999999999999865
No 453
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.07 E-value=0.011 Score=51.23 Aligned_cols=23 Identities=22% Similarity=0.262 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcC
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
..+.|.|++|+|||||+++|+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999999999976
No 454
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.07 E-value=0.0063 Score=59.91 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=21.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcC
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
+..++++|+|||||||++..|+..
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 466999999999999999999977
No 455
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.07 E-value=0.013 Score=54.22 Aligned_cols=22 Identities=32% Similarity=0.345 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHc
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTK 46 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg 46 (374)
..|.|+|+|||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999986
No 456
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.04 E-value=0.01 Score=56.10 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 017295 27 IGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 27 vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
+.|.||||+|||||++++++.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999987
No 457
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.03 E-value=0.013 Score=52.59 Aligned_cols=24 Identities=29% Similarity=0.560 Sum_probs=20.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcC
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
.++.||+|+|||||||+-+.|+..
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999864
No 458
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.02 E-value=0.012 Score=53.08 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcC
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
..|||.|++||||||+-+.|...
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 45999999999999999999873
No 459
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.96 E-value=0.013 Score=49.24 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcC
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
..+.|.|++|+|||||.+.++..
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999999876
No 460
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.91 E-value=0.014 Score=51.35 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=21.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcC
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
+..+.|.|+||+|||||.+.++..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 456999999999999999999876
No 461
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.89 E-value=0.013 Score=54.17 Aligned_cols=22 Identities=27% Similarity=0.578 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHc
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTK 46 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg 46 (374)
..|+|.|++||||||+.+.|..
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4599999999999999999984
No 462
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=94.84 E-value=0.0055 Score=61.70 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 017295 26 KIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
..+|+|+||||||||+.+|...
T Consensus 62 ~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 62 FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp EEEEEESHHHHHHHHTHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999999655
No 463
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.82 E-value=0.015 Score=55.63 Aligned_cols=31 Identities=26% Similarity=0.226 Sum_probs=25.3
Q ss_pred ccc--cccCCceEEEEcCCCCcHHHHHHHHHcC
Q 017295 17 ILG--RFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 17 vL~--~i~~~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
+|+ .+..+..+.|.|+||+|||||...++..
T Consensus 52 ~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~ 84 (349)
T 2zr9_A 52 ALGIGGLPRGRVIEIYGPESSGKTTVALHAVAN 84 (349)
T ss_dssp HTSSSSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred HhccCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 454 6777788999999999999997777754
No 464
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.81 E-value=0.013 Score=62.22 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=23.8
Q ss_pred ccCCceEEEEcCCCCcHHHHHHHHHcC
Q 017295 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 21 i~~~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
+..+..+.|+|+||+|||||.++|++.
T Consensus 235 i~~~~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 235 VKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCCCCEEEECSCTTSSHHHHHHHHHHT
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 345566999999999999999999997
No 465
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.79 E-value=0.016 Score=53.37 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=21.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcC
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
...+.|.||||+|||||.++|++.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 456899999999999999999986
No 466
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.67 E-value=0.019 Score=52.45 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=22.5
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHcC
Q 017295 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 22 ~~~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
.....+.|.||||+|||||.++|++.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34455999999999999999999986
No 467
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=94.53 E-value=0.016 Score=58.19 Aligned_cols=31 Identities=16% Similarity=0.301 Sum_probs=25.1
Q ss_pred cccccccCCceEEEEcCCCCcHHHHHHHHHc
Q 017295 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTK 46 (374)
Q Consensus 16 ~vL~~i~~~~~vgLvG~nGaGKSTL~n~Ltg 46 (374)
++.=++..+.++.|+|.+||||||++|+|..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHH
Confidence 4444555567799999999999999999876
No 468
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.49 E-value=0.014 Score=51.60 Aligned_cols=30 Identities=20% Similarity=0.159 Sum_probs=23.6
Q ss_pred cccccCCceEEEEcCCCCcHHHHHHHHHcC
Q 017295 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 18 L~~i~~~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
++++...-.+.|.||||+||||+..+|+..
T Consensus 52 ~~~iPkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 52 LKGTPKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHTCTTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HhcCCcccEEEEECCCCCCHHHHHHHHHHH
Confidence 344444345899999999999999999976
No 469
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.47 E-value=0.019 Score=54.36 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=21.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcC
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
+..+.|.|++|+|||||++.+++.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 445999999999999999999986
No 470
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=94.44 E-value=0.019 Score=54.37 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 017295 26 KIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
+|.|+|..|+|||||++.+.+.
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~ 22 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHN 22 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSC
T ss_pred CEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999988865
No 471
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.43 E-value=0.022 Score=54.16 Aligned_cols=22 Identities=27% Similarity=0.545 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 017295 26 KIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
.+.|.|+||+|||||++.+++.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999987
No 472
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.42 E-value=0.019 Score=53.12 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcC
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
..+.|+||||+|||||.++|++.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 46899999999999999999987
No 473
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=94.37 E-value=0.024 Score=56.52 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 017295 26 KIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
-+.|+||||+|||||.++|++.
T Consensus 51 gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999999986
No 474
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.37 E-value=0.019 Score=53.74 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcC
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
..+.|.|+||+|||||+++|++.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999999999986
No 475
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.33 E-value=0.023 Score=56.12 Aligned_cols=31 Identities=19% Similarity=0.272 Sum_probs=25.5
Q ss_pred ccccccCCceEEEEcCCCCcHHHHHHHHHcC
Q 017295 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 17 vL~~i~~~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
++.++..|..+.|.|+||+|||||+..|++.
T Consensus 196 ~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~ 226 (454)
T 2r6a_A 196 MTSGFQRSDLIIVAARPSVGKTAFALNIAQN 226 (454)
T ss_dssp HHSSBCTTCEEEEECCTTSCHHHHHHHHHHH
T ss_pred hcCCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3345566677999999999999999988876
No 476
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.30 E-value=0.027 Score=50.59 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcC
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
...+.|.|+||+|||||.++|+..
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 344889999999999999999976
No 477
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.29 E-value=0.024 Score=49.61 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcC
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
..|+|.|++||||||+.+.|+..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999875
No 478
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.28 E-value=0.018 Score=48.45 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=20.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcC
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
...+.|.|++|+|||||.+.++..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 345889999999999999999876
No 479
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.27 E-value=0.022 Score=49.69 Aligned_cols=22 Identities=27% Similarity=0.280 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 017295 26 KIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
.+.|.|++|+|||||++.++..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999865
No 480
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.24 E-value=0.017 Score=51.55 Aligned_cols=31 Identities=26% Similarity=0.261 Sum_probs=24.3
Q ss_pred cccccccCCceEEEEcCCCCcHHHHHHHHHc
Q 017295 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTK 46 (374)
Q Consensus 16 ~vL~~i~~~~~vgLvG~nGaGKSTL~n~Ltg 46 (374)
.++..+..+..+.++|++||||||++..+..
T Consensus 68 ~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 68 EILEAISQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHHHHHHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 3445555677899999999999998887754
No 481
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.19 E-value=0.029 Score=49.66 Aligned_cols=25 Identities=28% Similarity=0.271 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcC
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
.+..|.|.|++||||||+.+.|...
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4667999999999999999999764
No 482
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.12 E-value=0.025 Score=56.78 Aligned_cols=21 Identities=38% Similarity=0.434 Sum_probs=19.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHH
Q 017295 25 LKIGIVGLPNVGKSTLFNTLT 45 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Lt 45 (374)
..|+|+|++|||||||++.|+
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 459999999999999999999
No 483
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.09 E-value=0.026 Score=55.96 Aligned_cols=30 Identities=33% Similarity=0.469 Sum_probs=24.7
Q ss_pred cccccCCceEEEEcCCCCcHHHHHHHHHcC
Q 017295 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 18 L~~i~~~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
|..+-.|.+++|+|++|+|||||++.|++.
T Consensus 145 L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 145 LAPYIKGGKIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp HSCEETTCEEEEECCSSSCHHHHHHHHHHH
T ss_pred HhhhccCCEEEEECCCCCCccHHHHHHHhh
Confidence 333445777999999999999999999875
No 484
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.05 E-value=0.032 Score=51.75 Aligned_cols=26 Identities=27% Similarity=0.238 Sum_probs=21.5
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHcC
Q 017295 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 22 ~~~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
.....+.|.||||+|||+|.++|+..
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 33345777899999999999999976
No 485
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.93 E-value=0.035 Score=52.44 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcC
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
..|.|+||+|||||||-+.|+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999975
No 486
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=93.90 E-value=0.026 Score=55.59 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcC
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
..+.|.|+||+|||||+++|++.
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~ 153 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNY 153 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999986
No 487
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.88 E-value=0.033 Score=50.14 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=19.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHH
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLT 45 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Lt 45 (374)
...+.++|++|||||||++.|+
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La 35 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFG 35 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEEeCCCCCCHHHHHHHHH
Confidence 3568999999999999999999
No 488
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.82 E-value=0.033 Score=54.44 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcC
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
..|.|+|+|||||||+.+.|+..
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 45899999999999999999865
No 489
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.82 E-value=0.02 Score=56.33 Aligned_cols=23 Identities=30% Similarity=0.392 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcC
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
..|+++|+||+||||+.+.|++.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999986
No 490
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.81 E-value=0.036 Score=49.90 Aligned_cols=25 Identities=32% Similarity=0.332 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcC
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
.+..|.|.|++||||||+.+.|...
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~ 50 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVET 50 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999865
No 491
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.78 E-value=0.035 Score=49.59 Aligned_cols=24 Identities=42% Similarity=0.463 Sum_probs=21.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcC
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
+..|+|.|..||||||+.+.|...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 356899999999999999999976
No 492
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.75 E-value=0.029 Score=50.23 Aligned_cols=26 Identities=19% Similarity=0.210 Sum_probs=19.8
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHcC
Q 017295 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 22 ~~~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
..+..|.|.|++||||||+.+.|...
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35677999999999999999999865
No 493
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.73 E-value=0.035 Score=47.81 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 017295 26 KIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
.+.|.|++|+|||||.+.++..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999999864
No 494
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.69 E-value=0.031 Score=52.47 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 017295 26 KIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 26 ~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
.+.|.||||+|||||.+++++.
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999999976
No 495
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.63 E-value=0.042 Score=50.68 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=20.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHcC
Q 017295 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 24 ~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
+..+.|.|+||+|||||.++++..
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 345899999999999999988765
No 496
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.59 E-value=0.02 Score=53.17 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=17.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcC
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
..|||-|++||||||+.+.|...
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999864
No 497
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.54 E-value=0.037 Score=52.62 Aligned_cols=23 Identities=35% Similarity=0.351 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHcC
Q 017295 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 25 ~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
..|+|+||+|||||||-+.|+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 36999999999999999999875
No 498
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.53 E-value=0.046 Score=44.82 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHcC
Q 017295 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 23 ~~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
.+..|-|.|++|+|||+|.++|...
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHh
Confidence 4456999999999999999999976
No 499
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.46 E-value=0.026 Score=51.29 Aligned_cols=26 Identities=42% Similarity=0.474 Sum_probs=22.2
Q ss_pred cCCceEEEEcCCCCcHHHHHHHHHcC
Q 017295 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 22 ~~~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
..+..|+|.|.+||||||+.+.|...
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 34567999999999999999999876
No 500
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.39 E-value=0.053 Score=51.49 Aligned_cols=29 Identities=28% Similarity=0.224 Sum_probs=24.8
Q ss_pred ccccCCceEEEEcCCCCcHHHHHHHHHcC
Q 017295 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (374)
Q Consensus 19 ~~i~~~~~vgLvG~nGaGKSTL~n~Ltg~ 47 (374)
+.+..+..+.|.|+||+|||||...|+..
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35677778999999999999999888864
Done!