RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 017295
(374 letters)
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop,
OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Length = 396
Score = 619 bits (1599), Expect = 0.0
Identities = 228/397 (57%), Positives = 279/397 (70%), Gaps = 25/397 (6%)
Query: 1 MPPKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE 60
MPPK K + PI+GRF + LKIGIVGLPNVGKST FN LT AENFPFCTI+
Sbjct: 1 MPPK--KGGDGIKPPPIIGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTID 58
Query: 61 PNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQG------------- 107
PNE+RV +PDERF++LCQ KP S +PAFL + DIAGLV+GAH GQG
Sbjct: 59 PNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACD 118
Query: 108 -------AFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQ 160
AFED DI HV+ SVDP+RD+E+I EL+LKD E + I+ +EK R DK+
Sbjct: 119 GIFHLTRAFEDDDITHVEGSVDPIRDIEIIHEELQLKDEEMIGPIIDKLEKVAVRGGDKK 178
Query: 161 LKIEHELCQRVKAW-LQDGKDVR-LGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQR 218
LK E+++ +VK+W + K VR DW +IE+LN LT+KP+VYLVN++EKDY R
Sbjct: 179 LKPEYDIMCKVKSWVIDQKKPVRFYHDWNDKEIEVLNKHLFLTSKPMVYLVNLSEKDYIR 238
Query: 219 KKNKFLPKIHAWVQEHG-GEQIIPFSCALERNLADMPPDEAAKYCEENKVQSALPKIIKT 277
KKNK+L KI WV ++ G +IPFS ALE L ++ +E KY E N QSALPKIIK
Sbjct: 239 KKNKWLIKIKEWVDKYDPGALVIPFSGALELKLQELSAEERQKYLEANMTQSALPKIIKA 298
Query: 278 GFSAINLIYFFTAGPDEVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVMKFDDLKELGS 337
GF+A+ L YFFTAGPDEV+ W IR+ TKAPQAAG IHTDFE+GFI AEVMK++D KE GS
Sbjct: 299 GFAALQLEYFFTAGPDEVRAWTIRKGTKAPQAAGKIHTDFEKGFIMAEVMKYEDFKEEGS 358
Query: 338 EPAVKAAGKYKQEGKTYVVQDGDIIFFKFNVSGGGKK 374
E AVKAAGKY+Q+G+ Y+V+DGDIIFFKFN KK
Sbjct: 359 ENAVKAAGKYRQQGRNYIVEDGDIIFFKFNTPQQPKK 395
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics,
GTP1OBG, PSI, protein structure initiative; 2.80A
{Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Length = 392
Score = 591 bits (1525), Expect = 0.0
Identities = 183/394 (46%), Positives = 253/394 (64%), Gaps = 31/394 (7%)
Query: 1 MPPKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTI 59
MPPK K+ + GR ++LK GIVG+PNVGKST F +TK + N+P+ TI
Sbjct: 1 MPPK----KQQEVVKVQWGRPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATI 56
Query: 60 EPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQG------------ 107
+P EA+V +PDERF+WLC+ +KPKS VPAFL + DIAGL +GA G G
Sbjct: 57 DPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAV 116
Query: 108 --------AFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSN-- 157
AF+D +IIHV+ VDP+RDL +I EL +KD EF+E+ +E + K R
Sbjct: 117 DAIYQVVRAFDDAEIIHVEGDVDPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANT 176
Query: 158 --DKQLKIEHELCQRVKAWLQDGKD-VRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEK 214
K K E + ++V +L + K +R GDW ++EI+N+ LLTAKPV+YLVNM+E+
Sbjct: 177 LEMKAKKEEQAIIEKVYQYLTETKQPIRKGDWSNREVEIINSLYLLTAKPVIYLVNMSER 236
Query: 215 DYQRKKNKFLPKIHAWVQEHG-GEQIIPFSCALERNLADMPPDEAAKYCEENKVQSALPK 273
D+ R+KNK+LPKI W+ E+ G+ +IP S A E L + +EA + C++ +S LPK
Sbjct: 237 DFLRQKNKYLPKIKKWIDENSPGDTLIPMSVAFEERLTNFTEEEAIEECKKLNTKSMLPK 296
Query: 274 IIKTGFSAINLIYFFTAGPDEVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVMKFDDLK 333
II TG++A+NLI +FT G DEV+ W IR+ TKAPQAAG IHTDFE+ F+ E+M + DL
Sbjct: 297 IIVTGYNALNLINYFTCGEDEVRSWTIRKGTKAPQAAGVIHTDFEKAFVVGEIMHYQDLF 356
Query: 334 ELGSEPAVKAAGKYKQEGKTYVVQDGDIIFFKFN 367
+ +E A +AAGKY +GK YV++ GDI +K
Sbjct: 357 DYKTENACRAAGKYLTKGKEYVMESGDIAHWKAG 390
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics,
structure 2 function project, S2F, unknown function;
2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Length = 363
Score = 452 bits (1166), Expect = e-160
Identities = 137/365 (37%), Positives = 216/365 (59%), Gaps = 25/365 (6%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS 84
K GIVGLPNVGKSTLFN LTK I A N+PFCTIEPN V +PD R + L ++ KP+
Sbjct: 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPER 62
Query: 85 AVPAFLEIHDIAGLVRGAHEGQG--------------------AFEDPDIIHVDDSVDPV 124
+P +E DIAGLV GA +G+G FE+ DI+HV +DP+
Sbjct: 63 ILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPL 122
Query: 125 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 184
D++ I+ EL L D++ ER I+ ++K K DK+ K E + +++ L++ +R
Sbjct: 123 DDIDTINTELALADLDSCERAIQRLQKRAK-GGDKEAKFELSVMEKILPVLENAGMIRSV 181
Query: 185 DWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSC 244
+++ + ++ LT KP +Y+ N+NE + + N +L ++ + G ++P
Sbjct: 182 GLDKEELQAIKSYNFLTLKPTMYIANVNEDGF--ENNPYLDRVREIAAKEGAV-VVPVCA 238
Query: 245 ALERNLADMPPDEAAKYCEENKVQ-SALPKIIKTGFSAINLIYFFTAGPDEVKCWQIRRQ 303
A+E +A++ +E ++ ++ ++ L ++I+ G++ +NL +FTAG EV+ W +
Sbjct: 239 AIESEIAELDDEEKVEFLQDLGIEEPGLNRVIRAGYALLNLQTYFTAGVKEVRAWTVSVG 298
Query: 304 TKAPQAAGTIHTDFERGFICAEVMKFDDLKELGSEPAVKAAGKYKQEGKTYVVQDGDIIF 363
AP+AA IHTDFE+GFI AEV+ ++D + E K AGK++ EGK Y+VQDGD++
Sbjct: 299 ATAPKAAAVIHTDFEKGFIRAEVIAYEDFIQFNGENGAKEAGKWRLEGKDYIVQDGDVMH 358
Query: 364 FKFNV 368
F+FNV
Sbjct: 359 FRFNV 363
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio
project on protein structural and functional analyses;
HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Length = 368
Score = 436 bits (1125), Expect = e-154
Identities = 149/369 (40%), Positives = 203/369 (55%), Gaps = 29/369 (7%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS 84
L +GIVGLPNVGKSTLFN LT+ A N+PF TI+ N V + DER L + F
Sbjct: 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGE 61
Query: 85 A----VPAFLEIHDIAGLVRGAHEGQG--------------------AFEDPDIIHVDDS 120
VP +E DIAGLV+GAH+G+G F DPD++HV
Sbjct: 62 RVPPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGR 121
Query: 121 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKD 180
VDP+ D EV+ EL L D+ +ERR+E + K + D++ E + + LQ+GK
Sbjct: 122 VDPLEDAEVVETELLLADLATLERRLERLRKEAR--ADRERLPLLEAAEGLYVHLQEGKP 179
Query: 181 VRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQ-RKKNKFLPKIHAWVQEHGGEQI 239
R A L LLTAKPV+Y+ N+ E+D + N + + E G E +
Sbjct: 180 ARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAE-V 238
Query: 240 IPFSCALERNLADMPPDEAAKYCEENKVQ-SALPKIIKTGFSAINLIYFFTAGPDEVKCW 298
+ S LE LA++ +EA + +Q S L ++ + G+ A++L+ FFTAG EV+ W
Sbjct: 239 VVVSARLEAELAELSGEEARELLAAYGLQESGLQRLARAGYRALDLLTFFTAGEKEVRAW 298
Query: 299 QIRRQTKAPQAAGTIHTDFERGFICAEVMKFDDLKELGSEPAVKAAGKYKQEGKTYVVQD 358
+RR TKAP+AAG IH+D ERGFI AEV+ +D L E G K G + EGK Y VQD
Sbjct: 299 TVRRGTKAPRAAGEIHSDMERGFIRAEVIPWDKLVEAGGWARAKERGWVRLEGKDYEVQD 358
Query: 359 GDIIFFKFN 367
GD+I+ FN
Sbjct: 359 GDVIYVLFN 367
>1wxq_A GTP-binding protein; structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; 2.60A
{Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Length = 397
Score = 298 bits (766), Expect = 4e-99
Identities = 82/414 (19%), Positives = 135/414 (32%), Gaps = 96/414 (23%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVN-IPDERFEWLCQLFKPK 83
++IG+VG PNVGKST F+ T + + N+PF TIE N I D + L P+
Sbjct: 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQ 60
Query: 84 SA------VPAFLEIHDIAGLVRGAHEGQG--------------------AFEDPDII-H 116
+ +++ D+AGLV GAHEG+G A D
Sbjct: 61 NYEYRNGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQ 120
Query: 117 VDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELC-------- 168
D DPV D+E + E+ + + + K +K K E
Sbjct: 121 PTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQKIKLESAIAEHLSGIGVNEN 180
Query: 169 QRVKAWLQDGKDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIH 228
+A + W D+ + KP+V N + ++ + ++
Sbjct: 181 DVWEAMHKLNLPEDPTKWSQDDLLAFASEIRRVNKPMVIAANKADAA----SDEQIKRLV 236
Query: 229 AWVQEHGGEQIIPFSCALERNLADMPPDEAAKYCEENKVQSALPK--------------- 273
++ G +IP S A E L +Y L
Sbjct: 237 REEEKRGYI-VIPTSAAAELTLRKAAKAGFIEYIPGASEFKVLRDMSEKQKRALMVIKEK 295
Query: 274 -------------IIKTGFSAINLIYFFTA----------GPDEVKCWQIRRQTKAPQAA 310
I + F + LI + G + +++ + A
Sbjct: 296 VLDRFGSTGVQEVINRVVFDLLKLIPVYPVHDENKLTDQFGNVLPHVFLMKKGSTPRDLA 355
Query: 311 GTIHTDFERGFICAEVMKFDDLKELGSEPAVKAAGKYKQEGKTYVVQDGDIIFF 364
+HTD +GF+ A A ++ G+ Y +Q DI+
Sbjct: 356 FKVHTDLGKGFLYAI-----------------NARTKRRVGEDYELQFNDIVKI 392
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1
c.37.1.8 d.242.1.1
Length = 416
Score = 71.4 bits (176), Expect = 7e-14
Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 41/135 (30%)
Query: 27 IGIVGLPNVGKSTLFNTLT----KLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKP 82
+G+VG PN GKS+L +T K+A +PF T+ PN V + +E
Sbjct: 160 VGLVGYPNAGKSSLLAAMTRAHPKIA----PYPFTTLSPNLGVVEVSEEE---------- 205
Query: 83 KSAVPAFLEIHDIAGLVRGAHEGQG------------AFEDPDIIH-VDDSVDPVRDLEV 129
A DI G++ GA EG+G +++ +D + +P++ LE
Sbjct: 206 -RFTLA-----DIPGIIEGASEGKGLGLEFLRHIARTRV----LLYVLDAADEPLKTLET 255
Query: 130 ISAELRLKDIEFMER 144
+ E+ D + R
Sbjct: 256 LRKEVGAYDPALLRR 270
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent
factor, stress response, sporulation, large G-protein,
structural genomics, PSI; HET: G4P; 2.60A {Bacillus
subtilis} SCOP: b.117.1.1 c.37.1.8
Length = 342
Score = 69.5 bits (171), Expect = 2e-13
Identities = 49/177 (27%), Positives = 70/177 (39%), Gaps = 53/177 (29%)
Query: 27 IGIVGLPNVGKSTLFNTLT----KLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKP 82
+G+VG P+VGKSTL + ++ K+A ++ F T+ PN V D R
Sbjct: 161 VGLVGFPSVGKSTLLSVVSSAKPKIA----DYHFTTLVPNLGMVETDDGR---------- 206
Query: 83 KSAVPAFLEIHDIAGLVRGAHEGQG------------AFEDPDIIHV-----DDSVDPVR 125
S V A D+ GL+ GAH+G G I+HV + DP
Sbjct: 207 -SFVMA-----DLPGLIEGAHQGVGLGHQFLRHIERTRV----IVHVIDMSGLEGRDPYD 256
Query: 126 DLEVISAELRLKDIEFMER-RIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV 181
D I+ EL ++ ER +I K D + E + K L D V
Sbjct: 257 DYLTINQELSEYNLRLTERPQIIVANKM-----D--MPEAAENLEAFKEKLTDDYPV 306
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 63.6 bits (155), Expect = 7e-12
Identities = 23/134 (17%), Positives = 43/134 (32%), Gaps = 28/134 (20%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAV 86
I + G PNVGKS+ N +++ + +++ F T + ++
Sbjct: 32 IILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKY------------- 78
Query: 87 PAFLEIHDIAGLVRGAHEGQGAFEDPDI----------IHV-DDSVDPVRDLEVISAELR 135
+I D GL+ A E + E I + + D S ++
Sbjct: 79 ----QIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFY 134
Query: 136 LKDIEFMERRIEDV 149
F + I
Sbjct: 135 SIKSVFSNKSIVIG 148
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.0 bits (134), Expect = 1e-08
Identities = 45/322 (13%), Positives = 90/322 (27%), Gaps = 78/322 (24%)
Query: 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE 74
R L + I G+ GK+ + + F N N P+ E
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200
Query: 75 WLCQLF---------KPKSAVPAFLEIHDIAGLVRGAHEGQGAFEDPD-----IIHVDDS 120
L +L + + L IH I +R + ++ + +
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR------RLLKSKPYENCLLV-LLN- 252
Query: 121 VDPVRDLEVISA-ELR---------------LKDIEFMERRIEDVEKSMKRSNDKQL--- 161
V++ + +A L L ++ ++ K L
Sbjct: 253 ---VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 162 ----KIE---HELCQR-------VKAWLQDGKDVRLGDWKAADIEILNTFQLLTAKPVVY 207
+ + E+ + ++DG +WK + + L T +
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA-TWDNWKHVNCDKLTTIIESS------ 362
Query: 208 LVNMNEKDYQRKKNKF--LPKIHAWVQEHGGEQIIPFSCALERNLADMPPDEAAKYCEEN 265
L + +Y++ ++ P A IP + L D+ + +
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPP-SAH---------IP-TILLSLIWFDVIKSDVMVVVNKL 411
Query: 266 KVQSALPKIIKTGFSAINLIYF 287
S + K K +I IY
Sbjct: 412 HKYSLVEKQPKESTISIPSIYL 433
Score = 51.4 bits (122), Expect = 3e-07
Identities = 72/328 (21%), Positives = 106/328 (32%), Gaps = 117/328 (35%)
Query: 1 MPPKASKSKEAP------AE--RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAE 52
+P + + P AE R L + + + L + +S+L N L PAE
Sbjct: 318 LPREVLTT--NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL-NVLE----PAE 370
Query: 53 ---NFPFCTIEPNEARVNIPDERFE--W-----------LCQLFKPKSAV-----PAFLE 91
F ++ P +IP W + +L K S V + +
Sbjct: 371 YRKMFDRLSVFPPS--AHIPTILLSLIWFDVIKSDVMVVVNKLHK-YSLVEKQPKESTIS 427
Query: 92 IHDIAGLVRGAHEGQGA--------FEDPDIIHVDDSVDPVRD----------LEVISAE 133
I I ++ E + A + P DD + P D L+ I
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487
Query: 134 LRLK-------DIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 186
R+ D F+E+ KI H+ AW G
Sbjct: 488 ERMTLFRMVFLDFRFLEQ-----------------KIRHD----STAWNASG-------- 518
Query: 187 KAADIEILNTFQ-LLTAKPVVYLVNMNEKDYQRKKN---KFLPKIHAWVQEHGGEQII-- 240
ILNT Q L KP Y+ + N+ Y+R N FLPKI E +I
Sbjct: 519 -----SILNTLQQLKFYKP--YICD-NDPKYERLVNAILDFLPKI--------EENLICS 562
Query: 241 PFSCALERNLADMPPDEAAKYCEENKVQ 268
++ L L M DEA +VQ
Sbjct: 563 KYTDLLRIAL--MAEDEAIFEEAHKQVQ 588
Score = 35.6 bits (81), Expect = 0.026
Identities = 44/331 (13%), Positives = 93/331 (28%), Gaps = 99/331 (29%)
Query: 106 QGAF-EDPDIIHVDDSVDPV---RDLEVI-------SAELRLKDI----------EFMER 144
+ AF ++ D V D + +++ I S LRL +F+E
Sbjct: 26 EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE 85
Query: 145 RIED-----VEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD----WKAADIEILN 195
+ + + + QR + + D ++ + L
Sbjct: 86 VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY----NDNQVFAKYNVSRLQPYLKLR 141
Query: 196 TFQLLTAKP----VVY---------LVNMNEKDYQRKKNKFLPKIHAWV---QEHGGEQI 239
LL +P ++ + Y+ + K KI W+ + E +
Sbjct: 142 Q-ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC-KMDFKIF-WLNLKNCNSPETV 198
Query: 240 IPFSCALERNLADMPPDEAAKYCEENKVQSALPKIIKTGFSAINLIYFFTAGP------D 293
+ L++ L + P+ + + S + I + + + +
Sbjct: 199 LE---MLQKLLYQIDPN----WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251
Query: 294 EV-----------KCWQI----RRQ--TKAPQAAGTIHT---DFERGF-------ICAEV 326
V C +I R + T AA T H + +
Sbjct: 252 NVQNAKAWNAFNLSC-KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310
Query: 327 --MKFDDLKE--LGSEP-AVKAAGKYKQEGK 352
+ DL L + P + + ++G
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 49.8 bits (119), Expect = 6e-07
Identities = 34/163 (20%), Positives = 53/163 (32%), Gaps = 43/163 (26%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAV 86
+ I G PNVGKSTL LT ++PF T N + R+
Sbjct: 170 VVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRY------------- 216
Query: 87 PAFLEIHDIAGLVRGAHEGQGAFEDPD----------IIHV----DDSVDPVRDLEVISA 132
+I D GL+ + E II++ + P+ + +
Sbjct: 217 ----QIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFE 272
Query: 133 ELRL------------KDIEFMERRIEDVEKSMKRSNDKQLKI 163
E+ K E I+ +EK +K +KI
Sbjct: 273 EVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKI 315
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 48.8 bits (117), Expect = 1e-06
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73
IGIVG N GK++LFN+LT L + F T+ P + I + +
Sbjct: 182 IGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI 228
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins,
cell membrane, ION transport, transmembrane; HET: GNP;
1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A*
2wjh_A*
Length = 165
Score = 46.3 bits (111), Expect = 2e-06
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE 74
+I ++G PNVGKST+FN LT + N+P T+E E E+F+
Sbjct: 4 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFK 53
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane
G-proteins, cell membrane, ION transport,
transmembrane; HET: GDP; 2.20A {Methanocaldococcus
jannaschii}
Length = 188
Score = 46.8 bits (112), Expect = 2e-06
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE 74
+I ++G PNVGKST+FN LT + N+P T+E E E+F+
Sbjct: 8 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFK 57
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small
GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga
maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Length = 258
Score = 46.5 bits (111), Expect = 4e-06
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE 74
+K+ + G PNVGK++LFN LT N+P T+E E
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTIN 55
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural
genomics; HET: GDP; 1.96A {Thermus thermophilus}
Length = 161
Score = 44.8 bits (107), Expect = 7e-06
Identities = 15/26 (57%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Query: 26 KIGIVGLPNVGKSTLFNTLT--KLAI 49
K+ IVG PNVGKS+LFN L + A+
Sbjct: 3 KVVIVGRPNVGKSSLFNRLLKKRSAV 28
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle,
G-protein, prokaryote, GTP-BIND nucleotide-binding,
metal transport; 2.70A {Pyrococcus furiosus}
Length = 271
Score = 45.4 bits (108), Expect = 1e-05
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE 74
+ +VG PNVGK+T+FN LT L N+P T+E E + ++ F
Sbjct: 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFL 53
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO,
cell inner membrane, cell ME GTP-binding, ION
transport, membrane; 1.80A {Escherichia coli} PDB:
3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Length = 274
Score = 45.4 bits (108), Expect = 1e-05
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE 74
L IG++G PN GK+TLFN LT N+ T+E E + + D +
Sbjct: 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVT 53
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron
uptake, cell inner membrane, cell GTP-binding, ION
transport, membrane; 2.50A {Legionella pneumophila}
Length = 256
Score = 45.0 bits (107), Expect = 1e-05
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE 74
++G PN GK+TLFN LT N+P T+E + + E
Sbjct: 3 HALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIE 51
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 43.8 bits (104), Expect = 2e-05
Identities = 14/42 (33%), Positives = 16/42 (38%)
Query: 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVN 67
I G NVGKSTL LT + P T + E
Sbjct: 3 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK 44
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA
maturation, GTP-binding domain, maturation enzyme,
oxidoreductase; 2.99A {Thermotoga neapolitana}
Length = 423
Score = 44.2 bits (105), Expect = 4e-05
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 27 IGIVGLPNVGKSTLFNTLT--KLAI 49
I + G NVGKS+ N L ++I
Sbjct: 37 IVVAGRRNVGKSSFMNALVGQNVSI 61
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET:
GDP; 2.50A {Bacillus subtilis}
Length = 436
Score = 43.6 bits (104), Expect = 6e-05
Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 2/25 (8%)
Query: 27 IGIVGLPNVGKSTLFNTLT--KLAI 49
+ IVG PNVGKST+FN + +++I
Sbjct: 6 VAIVGRPNVGKSTIFNRIAGERISI 30
Score = 39.4 bits (93), Expect = 0.001
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 25 LKIGIVGLPNVGKSTLFNTL 44
++ ++G PNVGKS+L N +
Sbjct: 176 IQFCLIGRPNVGKSSLVNAM 195
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem
G-domains, ligand binding protein; HET: GDP; 1.90A
{Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Length = 439
Score = 43.6 bits (104), Expect = 6e-05
Identities = 17/25 (68%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
Query: 27 IGIVGLPNVGKSTLFNTLT--KLAI 49
+ IVG PNVGKSTLFN L K AI
Sbjct: 4 VLIVGRPNVGKSTLFNKLVKKKKAI 28
Score = 41.3 bits (98), Expect = 3e-04
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 10 EAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTL 44
E + + +K+ IVG PNVGKSTLFN +
Sbjct: 166 EKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAI 200
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP,
signaling protein; HET: GNP; 2.00A {Thermotoga maritima}
PDB: 3cnn_A* 3cno_A*
Length = 262
Score = 43.0 bits (102), Expect = 7e-05
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTK 46
F ++ IVG+PN GKST+ N L
Sbjct: 94 LSFDRLARVLIVGVPNTGKSTIINKLKG 121
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron
transport, GTPase, transmembrane, potassium; HET: GGM;
1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A*
3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Length = 272
Score = 43.1 bits (102), Expect = 7e-05
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 23 SHLKIGIVGLPNVGKSTLFNTLT 45
S +I ++G PN GK++LFN +T
Sbjct: 2 SMTEIALIGNPNSGKTSLFNLIT 24
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S
rRNA, 30S ribosome ASSE GTP-binding,
nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus}
PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 42.5 bits (101), Expect = 1e-04
Identities = 16/25 (64%), Positives = 19/25 (76%), Gaps = 2/25 (8%)
Query: 27 IGIVGLPNVGKSTLFNTL--TKLAI 49
+ IVG PNVGKSTL N L TK++I
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVSI 37
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 42.1 bits (100), Expect = 1e-04
Identities = 16/25 (64%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
Query: 27 IGIVGLPNVGKSTLFNTL--TKLAI 49
I IVG PNVGKSTL N L K++I
Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISI 35
Score = 32.8 bits (76), Expect = 0.14
Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 6/67 (8%)
Query: 184 GDWKAADIEILNTFQLLTAKPVVYLVNMNEK-DYQRKKNKFLPKIHAWVQEHGGEQIIPF 242
W D +LN + PV+ VN K D ++K LP + + I+P
Sbjct: 99 TRWTPDDEMVLNKLRE-GKAPVILAVN---KVDNVQEKADLLPHLQFLASQMNFLDIVPI 154
Query: 243 SCALERN 249
S A
Sbjct: 155 S-AETGL 160
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 42.1 bits (100), Expect = 2e-04
Identities = 15/25 (60%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Query: 27 IGIVGLPNVGKSTLFNTL--TKLAI 49
+ IVG PNVGKSTL N L K+A
Sbjct: 10 VAIVGKPNVGKSTLLNNLLGVKVAP 34
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics,
nysgxrc T18, GTPase, PSI, protein structure initiative;
HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Length = 282
Score = 41.5 bits (98), Expect = 2e-04
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 6 SKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTK 46
+E G ++ I+G+PNVGKSTL N L K
Sbjct: 102 EILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAK 142
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 40.2 bits (95), Expect = 3e-04
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTK--LAI 49
+K+ I G PN GKS+L N L AI
Sbjct: 5 MKVVIAGRPNAGKSSLLNALAGREAAI 31
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 41.1 bits (96), Expect = 4e-04
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTK 46
+ R+ + +VG NVGKST N + +
Sbjct: 156 INRYREGGDVYVVGCTNVGKSTFINRIIE 184
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 40.6 bits (96), Expect = 6e-04
Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTK--LAI 49
LK+ IVG PNVGKS+L N ++ AI
Sbjct: 225 LKVAIVGRPNVGKSSLLNAWSQSDRAI 251
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 40.6 bits (96), Expect = 6e-04
Identities = 16/27 (59%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTK--LAI 49
L++ IVG PNVGKSTL N L AI
Sbjct: 244 LRMVIVGKPNVGKSTLLNRLLNEDRAI 270
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 40.6 bits (96), Expect = 6e-04
Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTK--LAI 49
+ I G PN GKSTL NTL AI
Sbjct: 234 VSTVIAGKPNAGKSTLLNTLLGQERAI 260
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 40.0 bits (93), Expect = 8e-04
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 26 KIGIVGLPNVGKSTLFNTLTK 46
+ +VG NVGKST N + K
Sbjct: 162 DVYVVGCTNVGKSTFINRMIK 182
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET:
GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 39.0 bits (91), Expect = 0.001
Identities = 10/42 (23%), Positives = 21/42 (50%)
Query: 3 PKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTL 44
P A++ K + + + + + ++G VGKS+ N+L
Sbjct: 15 PAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSL 56
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.1 bits (88), Expect = 0.005
Identities = 37/206 (17%), Positives = 57/206 (27%), Gaps = 87/206 (42%)
Query: 179 KDVRLGDWKAADIEILNT--FQLLTAKPVVYLVNMNEKDYQRKKNKFLPK---IHAWVQE 233
+DV W AD +T F +L +V N P IH
Sbjct: 1643 QDV----WNRADNHFKDTYGFSILD---IV------------INN---PVNLTIH----- 1675
Query: 234 HGGEQIIPFSCALERNLADM----PPDEAAKYCEENK-VQSALPKII---------KTGF 279
GGE+ + N + M D K + K + T F
Sbjct: 1676 FGGEK----GKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQF 1731
Query: 280 S--AINLIYFFTAGPDEVKCWQ-IRRQTKAPQA---AGTIH---------TDFERGFICA 324
+ A+ E ++ ++ + P AG H + A
Sbjct: 1732 TQPAL-----TLM---EKAAFEDLKSKGLIPADATFAG--HSLGEYAALAS-------LA 1774
Query: 325 EVMKFDDLKELGSEPAVKAAGKYKQE 350
+VM + L E+ V G Q
Sbjct: 1775 DVMSIESLVEV-----VFYRGMTMQV 1795
Score = 34.3 bits (78), Expect = 0.074
Identities = 37/240 (15%), Positives = 67/240 (27%), Gaps = 105/240 (43%)
Query: 1 MPPKASKSKEAPAE---RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFC 57
+PP + E P+L I L + + + + K
Sbjct: 319 LPPSILEDSLENNEGVPSPMLS---------ISNLT---QEQVQDYVNK---------TN 357
Query: 58 TIEPNEARVNIPDERFEWLCQLF-KPKSAVPAFLEIHDIAGLVRGAHEGQGAFEDPDIIH 116
+ P +V I L K+ V ++G
Sbjct: 358 SHLPAGKQVEIS---------LVNGAKNLV--------VSG------------------- 381
Query: 117 VDDSVDPVRDLEVISAELR-LK-----D---IEFMERRIEDVEK---------S--MKRS 156
P + L ++ LR K D I F ER+++ + S + +
Sbjct: 382 ------PPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPA 435
Query: 157 NDKQLKIEHELCQRVKAW----LQ-------DGKDVRLGDWKAADIEILNTFQLLTAKPV 205
+D I +L + ++ +Q DG D+R+ I + PV
Sbjct: 436 SDL---INKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLS---GSI-SERIVDCIIRLPV 488
Score = 31.6 bits (71), Expect = 0.48
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 44/140 (31%)
Query: 44 LTKLAIPA-----ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEI--HDIA 96
++A+P N+ I P + E +++ + ++ +EI +++
Sbjct: 1792 TMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTG--WLVEIVNYNVE 1849
Query: 97 GLVRGAHEGQGAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRS 156
Q V + +LR ++ + +V +K
Sbjct: 1850 N-------QQ-------Y--------------VAAGDLR--ALD----TVTNVLNFIKLQ 1875
Query: 157 NDKQLKIEHEL-CQRVKAWL 175
++++ L + V+ L
Sbjct: 1876 KIDIIELQKSLSLEEVEGHL 1895
Score = 30.4 bits (68), Expect = 1.2
Identities = 44/282 (15%), Positives = 75/282 (26%), Gaps = 105/282 (37%)
Query: 86 VPAFLEIHDIAGLVRGAHEGQGAFEDPDIIHVDDSVDPVRDLEVIS-AELRLKDIEFMER 144
VP A + Q F I + + D E + AEL K + ++
Sbjct: 22 VPTASFFI--------ASQLQEQFNK---ILPEPTEGFAADDEPTTPAELVGKFLGYVSS 70
Query: 145 RIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWKAADIEILNTFQLLTAKP 204
+E + D+ L + L F
Sbjct: 71 LVEPSKVG---QFDQVLNL-----------------------------CLTEF------- 91
Query: 205 VVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALE--------RNLADMPPD 256
E Y + IHA + E E R +A P D
Sbjct: 92 --------ENCYLEGND-----IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFD 138
Query: 257 EAAKYCEENKVQSALPKIIKTG---FSAI------NLIYF------FTAGPDEVKCWQIR 301
+ + SAL + + G AI YF + V I+
Sbjct: 139 KKS--------NSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDL-IK 189
Query: 302 R--QTKAPQAAGTIHTD--FERGFICAEVMKFDDLKELGSEP 339
+T + T+ + F +G ++++ L+ + P
Sbjct: 190 FSAETLSELIRTTLDAEKVFTQGL---NILEW--LENPSNTP 226
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon;
HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB:
3bb1_A*
Length = 270
Score = 37.2 bits (86), Expect = 0.005
Identities = 10/42 (23%), Positives = 20/42 (47%)
Query: 3 PKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTL 44
A+++K + + L I ++G VGKS+ N++
Sbjct: 18 APATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSI 59
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 37.4 bits (86), Expect = 0.006
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 22 SSHLKIGIVGLPNVGKSTLFNTLT 45
SS L + + G GKS+ NTL
Sbjct: 67 SSVLNVAVTGETGSGKSSFINTLR 90
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 36.3 bits (84), Expect = 0.008
Identities = 26/138 (18%), Positives = 46/138 (33%), Gaps = 31/138 (22%)
Query: 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC 77
+ R SS + VGL + GK+ LF L + +I + A + + R
Sbjct: 1 MARKSSQRAVLFVGLCDSGKTLLFVRL-LTGQYRDTQT--SITDSSAIYKVNNNR----- 52
Query: 78 QLFKPKSAVPAFLEIHDIAGLVRGAHEGQGA------FEDPD-IIHVDDSVDPVRDLEVI 130
L + D+ G HE ++ V DS R+++ +
Sbjct: 53 ---------GNSLTLIDLPG-----HESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDV 98
Query: 131 SAELR--LKDIEFMERRI 146
+ L L D ++
Sbjct: 99 AEFLYQVLIDSMALKNSP 116
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein
NEDD3, neural precursor cell expressed developmentally
DOWN-regulated protein 3; NMR {Homo sapiens}
Length = 93
Score = 32.9 bits (75), Expect = 0.031
Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 17/88 (19%)
Query: 280 SAINLIYFFT----AGPDEVKCWQIRRQ-TKAPQAAGTIHTDFERGFICAEVMKFDDLKE 334
+ L+ +T PD + T IH + + F A V
Sbjct: 7 GYLKLVRIYTKPKGQLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALV-------- 58
Query: 335 LGSEPAVKAAGKYKQEGKTYVVQDGDII 362
+VK + + GK + ++D D+I
Sbjct: 59 --WGLSVKHNPQ--KVGKDHTLEDEDVI 82
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like
protein 1A, GTPase, membrane fission, motor Pro; HET:
GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Length = 360
Score = 33.3 bits (76), Expect = 0.11
Identities = 20/106 (18%), Positives = 34/106 (32%), Gaps = 1/106 (0%)
Query: 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEAR-VNIPDERFEWLCQLFKPKS 84
I +VG + GKS++ ++ T P + I D E+ L P+
Sbjct: 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRK 95
Query: 85 AVPAFLEIHDIAGLVRGAHEGQGAFEDPDIIHVDDSVDPVRDLEVI 130
F + G+ IH+ V +L +I
Sbjct: 96 KFTDFAAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLI 141
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 32.9 bits (74), Expect = 0.13
Identities = 36/258 (13%), Positives = 75/258 (29%), Gaps = 47/258 (18%)
Query: 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPK 83
+ +VG +GKSTL N+L + E E E V I E + K +
Sbjct: 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLR 77
Query: 84 SAVPAFLEIHDIAGLVRGAHEGQGAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFME 143
L + D G D+++ + I I +++
Sbjct: 78 ------LTVVDTPGY-------------------GDAINCRDCFKTI--------ISYID 104
Query: 144 RRIEDV---EKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWKAADIEILNTFQLL 200
+ E E + R + ++ H + + K D+ +
Sbjct: 105 EQFERYLHDESGLNRRHIIDNRV-HCCFYFISPFGH--------GLKPLDVAFMKAIHNK 155
Query: 201 TAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCALERNLADMPPDEAAK 260
+V ++ + +++ + +I ++EH + + + K
Sbjct: 156 V--NIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDEDEDFKEQTRLLK 213
Query: 261 YCEENKVQSALPKIIKTG 278
V + I G
Sbjct: 214 ASIPFSVVGSNQLIEAKG 231
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 32.0 bits (73), Expect = 0.20
Identities = 7/42 (16%), Positives = 13/42 (30%)
Query: 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEAR 65
+ KI G GK+T + ++ + R
Sbjct: 14 NFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDER 55
>2ged_A SR-beta, signal recognition particle receptor beta subunit;
protein transport, G protein, proline isomerization,
circular permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 31.6 bits (72), Expect = 0.24
Identities = 13/46 (28%), Positives = 16/46 (34%), Gaps = 3/46 (6%)
Query: 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEA 64
G S I I G N GK++L L + EP A
Sbjct: 43 GGGSYQPSIIIAGPQNSGKTSLLTLL-TTDSVRPTVV--SQEPLSA 85
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell
cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima}
PDB: 3pr1_A
Length = 195
Score = 31.4 bits (72), Expect = 0.28
Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 2/17 (11%)
Query: 34 NVGKSTLFNTLT--KLA 48
NVGKS+L N L K+A
Sbjct: 33 NVGKSSLLNALFNRKIA 49
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 31.2 bits (71), Expect = 0.31
Identities = 13/51 (25%), Positives = 19/51 (37%)
Query: 5 ASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFP 55
+ E G +K +VG VGK++L + T P E P
Sbjct: 1 SMGPGEPGGRGRAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIP 51
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 31.6 bits (72), Expect = 0.31
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 4/35 (11%)
Query: 17 ILGRFSSHLK----IGIVGLPNVGKSTLFNTLTKL 47
+L R + + G P GKSTL N L
Sbjct: 11 VLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAA 45
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold,
GTPase, GTP binding, protein binding, signali protein;
HET: GNP; 2.30A {Homo sapiens}
Length = 204
Score = 30.9 bits (70), Expect = 0.44
Identities = 20/75 (26%), Positives = 28/75 (37%), Gaps = 18/75 (24%)
Query: 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN-EARVNIPDERFEWLCQLFKP 82
+K +VG VGK+ L + T A P E P T+ N A V + +
Sbjct: 30 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIP--TVFDNYSANVMVDGKPVN-------- 79
Query: 83 KSAVPAFLEIHDIAG 97
L + D AG
Sbjct: 80 -------LGLWDTAG 87
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 30.8 bits (69), Expect = 0.48
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 25 LKIGIVGLPNVGKSTLFN-TLTKLAIPAENF 54
+KI I G P VGK+TL + +L A F
Sbjct: 1 MKIIITGEPGVGKTTLVKKIVERLGKRAIGF 31
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium
tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A*
Length = 355
Score = 30.6 bits (69), Expect = 0.70
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 27 IGIVGLPNVGKSTLFNTLTK 46
+GI G+P VGKST L
Sbjct: 82 VGITGVPGVGKSTAIEALGM 101
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport
protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo
sapiens}
Length = 349
Score = 30.6 bits (69), Expect = 0.74
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 27 IGIVGLPNVGKSTLFNTLTK 46
+G+ G P GKST K
Sbjct: 77 VGLSGPPGAGKSTFIEYFGK 96
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase,
cell division, cell cycle, SEP GTP-binding; 2.20A
{Burkholderia thailandensis}
Length = 223
Score = 30.4 bits (69), Expect = 0.74
Identities = 11/25 (44%), Positives = 12/25 (48%), Gaps = 3/25 (12%)
Query: 27 IGIVGLPNVGKSTLFNTLT---KLA 48
I G N GKST N L +LA
Sbjct: 32 IAFAGRSNAGKSTAINVLCNQKRLA 56
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2,
protein structure initiative, NEW YORK SGX research for
structural genomics; 1.80A {Escherichia coli} SCOP:
c.37.1.10
Length = 341
Score = 30.5 bits (69), Expect = 0.74
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 27 IGIVGLPNVGKSTLFNTLTK 46
+G+ G P GKST
Sbjct: 59 LGVTGTPGAGKSTFLEAFGM 78
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics,
nysgxrc T16, GTPase, PSI, protein structure initiative;
2.00A {Escherichia coli} SCOP: c.37.1.8
Length = 210
Score = 30.3 bits (69), Expect = 0.79
Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 3/25 (12%)
Query: 27 IGIVGLPNVGKSTLFNTLT---KLA 48
+ G N GKS+ NTLT LA
Sbjct: 29 VAFAGRSNAGKSSALNTLTNQKSLA 53
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET:
MSE; 1.70A {Methylobacterium extorquens} SCOP:
c.37.1.10 PDB: 2qm7_A*
Length = 337
Score = 30.5 bits (69), Expect = 0.82
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 27 IGIVGLPNVGKSTLFNTLTK 46
+GI G+P VGKST + L
Sbjct: 58 VGITGVPGVGKSTTIDALGS 77
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 30.2 bits (69), Expect = 0.84
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
Query: 13 AERPILGRFSSHLK----IGIVGLPN-VGKSTLFNTLTKL 47
AE LG S ++ + +VG PN GKSTL + +
Sbjct: 11 AESTRLGPLSGEVRAGEILHLVG-PNGAGKSTLLARMAGM 49
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.89
Identities = 7/23 (30%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 71 ERFEWLCQLFKPKSAVPAFLEIH 93
++ + +L+ SA PA L I
Sbjct: 23 KKLQASLKLYADDSA-PA-LAIK 43
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing
protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium
toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A*
1c0k_A*
Length = 363
Score = 30.4 bits (68), Expect = 0.92
Identities = 18/119 (15%), Positives = 33/119 (27%), Gaps = 16/119 (13%)
Query: 47 LAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAV-----------PAFLEIHDI 95
A PF T+ + + F+ +L A+ L H
Sbjct: 51 PWAGANWTPFMTLTDGPRQAKWEESTFKKWVELVPTGHAMWLKGTRRFAQNEDGLLGHWY 110
Query: 96 AGLVRGAHEGQGAFEDPDIIH----VDDSVDPVRDLEVISAELRLKDIEFMERRIEDVE 150
+ + E P SV + + ++ EL+ F R + +E
Sbjct: 111 KDITPNYRPLPSS-ECPPGAIGVTYDTLSVHAPKYCQYLARELQKLGATFERRTVTSLE 168
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 30.7 bits (70), Expect = 0.93
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 3 PKASKSKEAPAERPILGRFSSHLKIGIVGLPN-VGKSTLFNTLTKLAIPAE 52
P+ K + G IGIVG PN +GK+T L + P E
Sbjct: 361 PRLVKDYGSFKLEVEPGEIRKGEVIGIVG-PNGIGKTTFVKMLAGVEEPTE 410
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 29.9 bits (67), Expect = 0.95
Identities = 27/154 (17%), Positives = 49/154 (31%), Gaps = 36/154 (23%)
Query: 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSA 85
+I ++GL GKS++ + P E +E ++ D
Sbjct: 22 RILLMGLRRSGKSSIQKVVFHKMSPNETL---FLESTN-KIYKDDISNSSFVN------- 70
Query: 86 VPAFLEIHDIAG---LVRGAHEGQGAFEDPD-IIHVDDSVDPVRD------LEVISAELR 135
+I D G + + F +I+V D+ D + + V A
Sbjct: 71 ----FQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV 126
Query: 136 LKDIEFM-----------ERRIEDVEKSMKRSND 158
D+ F + +IE +R+ND
Sbjct: 127 NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRAND 160
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP;
1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A*
1svw_A*
Length = 195
Score = 29.8 bits (68), Expect = 1.0
Identities = 9/18 (50%), Positives = 11/18 (61%), Gaps = 3/18 (16%)
Query: 34 NVGKSTLFNTLT---KLA 48
NVGKS+ N+L LA
Sbjct: 33 NVGKSSFINSLINRKNLA 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 30.4 bits (69), Expect = 1.1
Identities = 15/79 (18%), Positives = 24/79 (30%), Gaps = 13/79 (16%)
Query: 27 IGIVGLPN-VGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSA 85
IGI+G PN +GK+T L I +E V + + Q P
Sbjct: 297 IGILG-PNGIGKTTFARILVGE-----------ITADEGSVTPEKQILSYKPQRIFPNYD 344
Query: 86 VPAFLEIHDIAGLVRGAHE 104
+ + +
Sbjct: 345 GTVQQYLENASKDALSTSS 363
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 30.1 bits (67), Expect = 1.2
Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 24 HLKIGIVGLPNVGKSTLFNTL--TKLAIPAENFPFCTIEPNEARVNIPDERFE 74
+ +VG +GKSTL N+L T L P P I+ E
Sbjct: 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKE 60
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 29.8 bits (68), Expect = 1.2
Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 3/20 (15%)
Query: 29 IVGL--PN-VGKSTLFNTLT 45
+ + PN GKSTL N +T
Sbjct: 35 VTLIIGPNGSGKSTLINVIT 54
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 29.6 bits (67), Expect = 1.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 18 LGRFSSHLKIGIVGLPNVGKSTLFNTL 44
LG + K+ +GL N GK+TL + L
Sbjct: 19 LGLYKKTGKLVFLGLDNAGKTTLLHML 45
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 29.5 bits (67), Expect = 1.5
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
Query: 12 PAERPILGRFSSHLK----IGIVGLPN-VGKSTLFNTLTKLAIPAE 52
AE + + + L + ++G N GKSTL + L + P +
Sbjct: 15 QAENFLFQQLNFDLNKGDILAVLG-QNGCGKSTLLDLLLGIHRPIQ 59
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP:
c.37.1.8
Length = 194
Score = 29.4 bits (66), Expect = 1.5
Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 6/53 (11%)
Query: 3 PKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFP 55
P A +S A + LK +VG VGK+ L + A P E P
Sbjct: 3 PGAGRSSMAHGPGAL------MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVP 49
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P,
MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 29.6 bits (66), Expect = 1.5
Identities = 7/43 (16%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 26 KIGIVGLPNVGKSTLFNTLTKLAIPAE-NFPFCTIEPNEARVN 67
K+ ++G GKS++ + + + TI+ + +
Sbjct: 5 KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLR 47
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.0 bits (64), Expect = 1.7
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 132 AELRL---KDI-EFMERRIEDVEKSMK--RSNDKQLKIEHE 166
E R KD+ E+ +R+ E VEK+ R DK + +
Sbjct: 110 QEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPD 150
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A
{Sulfolobus acidocaldarius} SCOP: c.37.1.1
Length = 194
Score = 28.9 bits (64), Expect = 1.8
Identities = 26/162 (16%), Positives = 52/162 (32%), Gaps = 17/162 (10%)
Query: 26 KIGIVGLPNVGKSTLFNTLTKLA----IPAENFPFCTIEPNEA----RVNIPDERFEWLC 77
+ G+P VGKST+ + ++ I + + A DE + L
Sbjct: 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRK-LS 61
Query: 78 QLFKPKSAVPAFLEIHDIAGLVRGAH---EGQGAFEDPDIIHVDDSVDPVRDLE---VIS 131
+ K + A I + A + + P + ++ +
Sbjct: 62 VEKQKKLQIDAAKGIAEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIFL 121
Query: 132 AELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKA 173
E K I + R+ D ++ +D+ + +E R A
Sbjct: 122 LEADPKII--LSRQKRDTTRNRNDYSDESVILETINFARYAA 161
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 29.6 bits (66), Expect = 1.8
Identities = 13/47 (27%), Positives = 17/47 (36%), Gaps = 6/47 (12%)
Query: 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARV 66
R + GI G GKSTL + + + FP E R
Sbjct: 457 RLKRARRYGICGPNGCGKSTLMRAIANGQV--DGFPT----QEECRT 497
Score = 29.6 bits (66), Expect = 1.9
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 12 PAERPILGRFSSHL----KIGIVGLPNVGKSTLFNTLTKLAIPAE 52
+P + + +I ++G GKSTL N LT +P
Sbjct: 683 GTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTS 727
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann,
hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 28.9 bits (64), Expect = 1.8
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 26 KIGIVGLPNVGKSTLFNTLTKL 47
+ + G P VGK+TL + +++
Sbjct: 3 HVFLTGPPGVGKTTLIHKASEV 24
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 28.8 bits (65), Expect = 2.0
Identities = 13/46 (28%), Positives = 18/46 (39%)
Query: 10 EAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFP 55
+ + LKI +VG VGK+ L +K IP P
Sbjct: 9 DMNTGAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVP 54
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 29.2 bits (65), Expect = 2.1
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 22 SSHLKIGIVGLPNVGKSTLFNTLT 45
+S L+I +VG GKS N++
Sbjct: 27 NSQLRIVLVGKTGAGKSATGNSIL 50
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C
...
Length = 186
Score = 28.6 bits (64), Expect = 2.3
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 12/75 (16%)
Query: 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFP------FCTIEPNEARVNIP------DE 71
+K +VG VGK+ L + T A P E P + + VN+ E
Sbjct: 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 64
Query: 72 RFEWLCQLFKPKSAV 86
++ L L P++ V
Sbjct: 65 DYDRLRPLSYPQTDV 79
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 29.0 bits (65), Expect = 2.4
Identities = 10/36 (27%), Positives = 13/36 (36%), Gaps = 3/36 (8%)
Query: 29 IVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEA 64
I G N GK++L L + EP A
Sbjct: 17 IAGPQNSGKTSLLTLL-TTDSVRPTVV--SQEPLSA 49
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 28.3 bits (64), Expect = 2.6
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 18 LGRFSSHLKIGIVGLPNVGKSTLFNTL 44
LG ++ H K+ +GL N GK+TL + L
Sbjct: 17 LGLWNKHGKLLFLGLDNAGKTTLLHML 43
>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH,
oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora
spinosa}
Length = 795
Score = 29.3 bits (66), Expect = 2.7
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 5/51 (9%)
Query: 95 IAGLVRGAHEGQGAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERR 145
+ GL+R E PD + D +P + L + L + + RR
Sbjct: 141 LWGLLRST-----QTEHPDRFVLVDVPEPAQLLPALPGVLACGEPQLALRR 186
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 28.7 bits (64), Expect = 2.8
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFP 55
K+ +VG GK+ + L K P P
Sbjct: 27 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVP 58
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3
(6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...;
bifunctional enzyme, EDTA complex; HET: F6P EDT ADP;
2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B*
3qpu_A* 3qpv_A* 3qpw_A*
Length = 520
Score = 28.9 bits (64), Expect = 2.9
Identities = 13/72 (18%), Positives = 24/72 (33%), Gaps = 4/72 (5%)
Query: 6 SKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTK----LAIPAENFPFCTIEP 61
+ + +S I +VGLP GK+ + LT+ + +P + F
Sbjct: 17 VDHRPSLPRSCGPKLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRR 76
Query: 62 NEARVNIPDERF 73
+ F
Sbjct: 77 EAVKQYSSYNFF 88
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET:
GDP; 1.78A {Arabidopsis thaliana}
Length = 212
Score = 28.5 bits (64), Expect = 3.3
Identities = 18/77 (23%), Positives = 26/77 (33%), Gaps = 18/77 (23%)
Query: 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN-EARVNIPDERFEWLCQLF 80
S +K VG VGK+ + T P + P T+ N A V + +
Sbjct: 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIP--TVFDNFSANVAVDGQIVN------ 58
Query: 81 KPKSAVPAFLEIHDIAG 97
L + D AG
Sbjct: 59 ---------LGLWDTAG 66
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 28.1 bits (62), Expect = 3.6
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 26 KIGIVGLPNVGKSTLFNTLTKL 47
+ + G+P VG +T
Sbjct: 5 VVVVTGVPGVGSTTSSQLAMDN 26
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 28.1 bits (62), Expect = 4.0
Identities = 7/35 (20%), Positives = 15/35 (42%)
Query: 10 EAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTL 44
+ + + S ++ +VG GKS N++
Sbjct: 7 HSSGRENLYFQGESTRRLILVGRTGAGKSATGNSI 41
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 28.4 bits (62), Expect = 4.7
Identities = 9/40 (22%), Positives = 15/40 (37%)
Query: 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNE 63
++ ++G GKST N L + + CT
Sbjct: 69 VFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTV 108
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC
transporter, nucleotide binding domain, NBD; HET: B44;
2.70A {Homo sapiens}
Length = 390
Score = 28.1 bits (63), Expect = 4.7
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPA 51
S ++G++G GKSTL + +L
Sbjct: 44 ISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE 74
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 27.3 bits (61), Expect = 5.4
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFP 55
+K VG VGK+ L + T P + P
Sbjct: 8 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVP 39
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 27.8 bits (62), Expect = 5.5
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFP 55
K+ +VG GK+ L +K P P
Sbjct: 25 RKKLVVVGDGACGKTCLLIVFSKDEFPEVYVP 56
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 27.4 bits (61), Expect = 5.7
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFP 55
KI +VG GK+ L + K P P
Sbjct: 8 CKIVVVGDSQCGKTALLHVFAKDCFPENYVP 38
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal
transducing protein, cyclase, effector enzyme; HET: GSP
FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB:
1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C*
1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C*
3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Length = 402
Score = 27.8 bits (61), Expect = 7.1
Identities = 12/62 (19%), Positives = 25/62 (40%)
Query: 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQL 79
+ + ++ ++G GKST+ + L + N +P AR N E+ + +
Sbjct: 36 VYRATHRLLLLGAGESGKSTIVKQMRILHVNGFNGEGGEEDPQAARSNSDGEKATKVQDI 95
Query: 80 FK 81
Sbjct: 96 KN 97
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A*
3p1j_A
Length = 260
Score = 27.3 bits (60), Expect = 7.2
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 22 SSHLKIGIVGLPNVGKSTLFNTL 44
S L+I +VG GKS N++
Sbjct: 20 RSELRIILVGKTGTGKSAAGNSI 42
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling
protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens}
PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B
1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A*
1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B*
...
Length = 201
Score = 27.0 bits (60), Expect = 7.4
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFP 55
K+ IVG GK+ L +K P P
Sbjct: 25 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVP 56
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 27.2 bits (61), Expect = 7.5
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTL 44
++ R S K+ IVGL N GK+T+
Sbjct: 14 LVPRGSQEHKVIIVGLDNAGKTTILYQF 41
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 26.9 bits (59), Expect = 8.3
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 27 IGIVGLPNVGKSTLFNTLTKL 47
+VG + GK+TL
Sbjct: 7 WQVVGYKHSGKTTLMEKWVAA 27
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus}
SCOP: c.37.1.8
Length = 205
Score = 27.0 bits (60), Expect = 8.6
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFP 55
KI +VG GK+ L + K P P
Sbjct: 28 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVP 59
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 26.8 bits (60), Expect = 8.7
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTL 44
++ R S + + +GL N GK+T+ N L
Sbjct: 14 LVPRGSKEVHVLCLGLDNSGKTTIINKL 41
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 26.8 bits (60), Expect = 9.0
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 25 LKIGIVGLPNVGKSTLFNTL 44
++I +VGL GK+T+ L
Sbjct: 1 MRILMVGLDAAGKTTILYKL 20
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.411
Gapped
Lambda K H
0.267 0.0727 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,953,138
Number of extensions: 366161
Number of successful extensions: 1273
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1235
Number of HSP's successfully gapped: 136
Length of query: 374
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 279
Effective length of database: 4,049,298
Effective search space: 1129754142
Effective search space used: 1129754142
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.1 bits)