RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 017295
(374 letters)
>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal
domain {Haemophilus influenzae [TaxId: 727]}
Length = 278
Score = 259 bits (663), Expect = 9e-86
Identities = 93/280 (33%), Positives = 158/280 (56%), Gaps = 25/280 (8%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS 84
K GIVGLPNVGKSTLFN LTK I A N+PFCTIEPN V +PD R + L ++ KP+
Sbjct: 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPER 62
Query: 85 AVPAFLEIHDIAGLVRGAHEGQG--------------------AFEDPDIIHVDDSVDPV 124
+P +E DIAGLV GA +G+G FE+ DI+HV +DP+
Sbjct: 63 ILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPL 122
Query: 125 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 184
D++ I+ EL L D++ ER I+ ++K + DK+ K E + +++ L++ +R
Sbjct: 123 DDIDTINTELALADLDSCERAIQRLQK-RAKGGDKEAKFELSVMEKILPVLENAGMIRSV 181
Query: 185 DWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSC 244
+++ + ++ LT KP +Y+ N+NE + + N +L ++ + G ++P
Sbjct: 182 GLDKEELQAIKSYNFLTLKPTMYIANVNEDGF--ENNPYLDRVREIAAKEGAV-VVPVCA 238
Query: 245 ALERNLADMPPDEAAKYCEENKVQ-SALPKIIKTGFSAIN 283
A+E +A++ +E ++ ++ ++ L ++I+ G++ +N
Sbjct: 239 AIESEIAELDDEEKVEFLQDLGIEEPGLNRVIRAGYALLN 278
>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 296
Score = 222 bits (565), Expect = 6e-71
Identities = 127/296 (42%), Positives = 183/296 (61%), Gaps = 27/296 (9%)
Query: 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERF 73
+ GR ++LK GIVG+PNVGKST F +TK + N+P+ TI+P EA+V +PDERF
Sbjct: 1 KVQWGRPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERF 60
Query: 74 EWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQG--------------------AFEDPD 113
+WLC+ +KPKS VPAFL + DIAGL +GA G G AF+D +
Sbjct: 61 DWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFDDAE 120
Query: 114 IIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHEL-----C 168
IIHV+ VDP+RDL +I EL +KD EF+E+ +E + K R + +
Sbjct: 121 IIHVEGDVDPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLEMKAKKEEQAIIE 180
Query: 169 QRVKAWLQDGKDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIH 228
+ + + + +R GDW ++EI+N+ LLTAKPV+YLVNM+E+D+ R+KNK+LPKI
Sbjct: 181 KVYQYLTETKQPIRKGDWSNREVEIINSLYLLTAKPVIYLVNMSERDFLRQKNKYLPKIK 240
Query: 229 AWVQEHG-GEQIIPFSCALERNLADMPPDEAAKYCEENKVQSALPKIIKTGFSAIN 283
W+ E+ G+ +IP S A E L + +EA + C++ +S LPKII TG++A+N
Sbjct: 241 KWIDENSPGDTLIPMSVAFEERLTNFTEEEAIEECKKLNTKSMLPKIIVTGYNALN 296
>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 319
Score = 180 bits (457), Expect = 2e-54
Identities = 71/313 (22%), Positives = 111/313 (35%), Gaps = 47/313 (15%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVN-IPDERFEWLCQLFKPK 83
++IG+VG PNVGKST F+ T + + N+PF TIE N I D + L P+
Sbjct: 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQ 60
Query: 84 ------SAVPAFLEIHDIAGLVRGAHEGQG--------------------AFEDPDI-IH 116
+++ D+AGLV GAHEG+G A D
Sbjct: 61 NYEYRNGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQ 120
Query: 117 VDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRV----- 171
D DPV D+E + E+ + + + K +K K E +
Sbjct: 121 PTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQKIKLESAIAEHLSGIGVNEN 180
Query: 172 ---KAWLQDGKDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIH 228
+A + W D+ + KP+V N + + + + +
Sbjct: 181 DVWEAMHKLNLPEDPTKWSQDDLLAFASEIRRVNKPMVIAANKADAASDEQIKRLVRE-- 238
Query: 229 AWVQEHGGEQIIPFSCALERNLADMPPDEAAKYCEENKVQSALPKIIKTGFSAINLI--- 285
+E G +IP S A E L +Y L + + A+ +I
Sbjct: 239 ---EEKRGYIVIPTSAAAELTLRKAAKAGFIEYIPGASEFKVLRDMSEKQKRALMVIKEK 295
Query: 286 ---YFFTAGPDEV 295
F + G EV
Sbjct: 296 VLDRFGSTGVQEV 308
>d1jala2 d.15.10.2 (A:279-363) YchF GTP-binding protein, C-terminal
domain {Haemophilus influenzae [TaxId: 727]}
Length = 85
Score = 147 bits (373), Expect = 5e-45
Identities = 43/85 (50%), Positives = 58/85 (68%)
Query: 284 LIYFFTAGPDEVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVMKFDDLKELGSEPAVKA 343
L +FTAG EV+ W + AP+AA IHTDFE+GFI AEV+ ++D + E K
Sbjct: 1 LQTYFTAGVKEVRAWTVSVGATAPKAAAVIHTDFEKGFIRAEVIAYEDFIQFNGENGAKE 60
Query: 344 AGKYKQEGKTYVVQDGDIIFFKFNV 368
AGK++ EGK Y+VQDGD++ F+FNV
Sbjct: 61 AGKWRLEGKDYIVQDGDVMHFRFNV 85
>d1ni3a2 d.15.10.2 (A:307-388) YchF GTP-binding protein, C-terminal
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 82
Score = 138 bits (350), Expect = 1e-41
Identities = 45/82 (54%), Positives = 59/82 (71%)
Query: 284 LIYFFTAGPDEVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVMKFDDLKELGSEPAVKA 343
LI +FT G DEV+ W IR+ TKAPQAAG IHTDFE+ F+ E+M + DL + +E A +A
Sbjct: 1 LINYFTCGEDEVRSWTIRKGTKAPQAAGVIHTDFEKAFVVGEIMHYQDLFDYKTENACRA 60
Query: 344 AGKYKQEGKTYVVQDGDIIFFK 365
AGKY +GK YV++ GDI +K
Sbjct: 61 AGKYLTKGKEYVMESGDIAHWK 82
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 65.3 bits (158), Expect = 4e-13
Identities = 34/162 (20%), Positives = 56/162 (34%), Gaps = 23/162 (14%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAV 86
+G+VG P+VGKSTL + ++ ++ F T+ PN V D R
Sbjct: 4 VGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGR-------------- 49
Query: 87 PAFLEIHDIAGLVRGAHEGQGAF-------EDPDIIHVDDSVDPVRDLEVISAELRLKDI 139
+ D+ GL+ GAH+G G E +I + + + L +
Sbjct: 50 --SFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQE 107
Query: 140 EFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV 181
+ +N + E + K L D V
Sbjct: 108 LSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTDDYPV 149
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 62.4 bits (150), Expect = 4e-12
Identities = 34/157 (21%), Positives = 61/157 (38%), Gaps = 25/157 (15%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAV 86
+G+VG PN GKS+L +T+ +PF T+ PN V + +E
Sbjct: 4 VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEE-------------- 49
Query: 87 PAFLEIHDIAGLVRGAHEGQGAFE---------DPDIIHVDDSVDPVRDLEVISAELRLK 137
+ DI G++ GA EG+G + +D + +P++ LE + E+
Sbjct: 50 --RFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAY 107
Query: 138 DIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAW 174
D + R + ++ +K + R
Sbjct: 108 DPALLRRPSLVALNKVDLLEEEAVKALADALAREGLA 144
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 49.2 bits (116), Expect = 8e-08
Identities = 31/145 (21%), Positives = 48/145 (33%), Gaps = 24/145 (16%)
Query: 25 LKIGIVGLPNVGKSTLFNTLT--KLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKP 82
L++ IVG PNVGKSTL N L AI + P T + + I F
Sbjct: 1 LRMVIVGKPNVGKSTLLNRLLNEDRAI-VTDIPGTTRDVISEEIVIRGILFRI------- 52
Query: 83 KSAVPAFLEIHDIAGLVRGAHEGQG------AFEDPD-IIHVDDSVDPVRDLEVISAELR 135
++ + E G E D ++ V D+ P+ + + E
Sbjct: 53 -------VDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI 105
Query: 136 LKDIEFMERRIEDVEKSMKRSNDKQ 160
+ DV + + K
Sbjct: 106 KNKRYLVVINKVDVVEKINEEEIKN 130
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 49.7 bits (117), Expect = 8e-08
Identities = 30/168 (17%), Positives = 54/168 (32%), Gaps = 9/168 (5%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAV 86
I G NVGKSTL LT + P T R I E +
Sbjct: 3 IIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVT------RKIIEIEWKNHKIIDMPGFGFM 56
Query: 87 PAFLEIHDIAGLVRGAHEGQGAFEDPDI-IHVDDSVDPVRDLEVISAELRLKDIEFMERR 145
+ H + ++ D+ + V D ++ + +
Sbjct: 57 MGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQF 116
Query: 146 IEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWKAADIEI 193
+ +++ + +K KI++ Q V +L + +V L + I I
Sbjct: 117 LRELDIPTIVAVNKLDKIKN--VQEVINFLAEKFEVPLSEIDKVFIPI 162
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 46.3 bits (108), Expect = 1e-06
Identities = 22/177 (12%), Positives = 53/177 (29%), Gaps = 15/177 (8%)
Query: 5 ASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEA 64
A + P++ I ++ G N GKS+ NTLT A
Sbjct: 5 APDIRHLPSDTGI--------EVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLIN 56
Query: 65 RVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGAFEDPDIIHVDDSVDPV 124
+ D + + G+ + + + +D
Sbjct: 57 LFEVADGKRLVDLPGYGYAEVPEEMKRKWQR-------ALGEYLEKRQSLQGLVVLMDIR 109
Query: 125 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV 181
L+ + ++ ++ + + K+ K ++ + + + + V A+ D +
Sbjct: 110 HPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVE 166
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 46.2 bits (108), Expect = 1e-06
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWL 76
+ +K+ IVG PNVGKSTLFN + P T +P + V I ++ ++
Sbjct: 6 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFV 61
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 45.9 bits (107), Expect = 2e-06
Identities = 30/142 (21%), Positives = 43/142 (30%), Gaps = 5/142 (3%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAV 86
I IVG PNVGKSTL N L I + T R I E Q +
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTT-----RHRIVGIHTEGAYQAIYVDTPG 62
Query: 87 PAFLEIHDIAGLVRGAHEGQGAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRI 146
E I L+ A + I V+ + D V++ K +
Sbjct: 63 LHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNK 122
Query: 147 EDVEKSMKRSNDKQLKIEHELC 168
D + + ++
Sbjct: 123 VDNVQEKADLLPHLQFLASQMN 144
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 44.6 bits (104), Expect = 5e-06
Identities = 21/173 (12%), Positives = 49/173 (28%), Gaps = 6/173 (3%)
Query: 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFK 81
S I I G N GK++L LT P + + + +
Sbjct: 1 SYQPSIIIAGPQNSGKTSLLTLLTT----DSVRPTVVSQEPLSAADYDGSGVTLVDFPGH 56
Query: 82 PKSAVPAFLEIHDIAGLVRGAHEGQGAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEF 141
K + A D + + + + D+ I+ I+
Sbjct: 57 VKLRYKLSDYLKTRA--KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDI 114
Query: 142 MERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWKAADIEIL 194
+ + + + + + +E E+ + ++ + +V + E
Sbjct: 115 LIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENT 167
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase
TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 44.0 bits (102), Expect = 6e-06
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 25 LKIGIVGLPNVGKSTLFNTLT--KLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ 78
+K+ I G PN GKS+L N L + AI + T + ++I +
Sbjct: 2 MKVVIAGRPNAGKSSLLNALAGREAAI-VTDIAGTTRDVLREHIHIDGMPLHIIDT 56
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 43.6 bits (102), Expect = 1e-05
Identities = 34/242 (14%), Positives = 64/242 (26%), Gaps = 34/242 (14%)
Query: 3 PKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLT--KLAIPAENFPFCTIE 60
A+++K + + L I ++G VGKS+ N++ ++ F
Sbjct: 11 APATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVS-ISPFQSEGPR 69
Query: 61 PNEARVNIPDERFEWLC--QLFKPKSAVPAFLEIHDIAGLVRGAHEGQGAFEDPDIIHVD 118
P + + L + L I ++ + + +D
Sbjct: 70 PVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNI------IKSFLLDKTIDVLLYVDRLD 123
Query: 119 DSVDPVRDLEVISAELRLKDIEFMER------RIEDVEKSMKRSNDKQLKIEHELCQRVK 172
D V A + + ++ K L Q V+
Sbjct: 124 AYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSKRSEALLQVVR 183
Query: 173 AWLQDGKDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQ 232
+ KD + PVV + N + K LP AW+
Sbjct: 184 SGASLKKD-----------------AQASDIPVVLIENSGRCNKNDSDEKVLPNGIAWIP 226
Query: 233 EH 234
Sbjct: 227 HL 228
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 42.8 bits (99), Expect = 2e-05
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQ 78
+ IVG PNVGKSTLFN L K E+ T +P + V + F+ +
Sbjct: 3 VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDT 55
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 41.2 bits (95), Expect = 8e-05
Identities = 26/166 (15%), Positives = 50/166 (30%), Gaps = 26/166 (15%)
Query: 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSA 85
+ VGL + GK+ LF L + +I + A + + R L
Sbjct: 2 AVLFVGLCDSGKTLLFVRLLT-GQYRDTQT--SITDSSAIYKVNNNRGNSLT-------- 50
Query: 86 VPAFLEIHDIAGLVRGAHEGQGAFEDPDIIHVDDSVDPVRDLEVISAELR--LKDIEFME 143
L +R + ++ V DS R+++ ++ L L D ++
Sbjct: 51 ----LIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALK 106
Query: 144 RRIE--------DVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV 181
D+ + +Q +E EL +
Sbjct: 107 NSPSLLIACNKQDIAMAKSAKLIQQQ-LEKELNTLRVTRSAAPSTL 151
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 40.6 bits (94), Expect = 9e-05
Identities = 23/150 (15%), Positives = 48/150 (32%), Gaps = 15/150 (10%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS 84
KI ++G VGK+ L T+ P ++ V I E+ +
Sbjct: 6 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVK---------- 55
Query: 85 AVPAFLEIHDIAGLVRGAHEGQGAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMER 144
L+I D AG R Q + + + + + + LR + +
Sbjct: 56 -----LQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNK 110
Query: 145 RIEDVEKSMKRSNDKQLKIEHELCQRVKAW 174
I + + +++ + + +A
Sbjct: 111 VITVLVGNKIDLAERREVSQQRAEEFSEAQ 140
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 40.5 bits (93), Expect = 9e-05
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEW 75
+ IVG PNVGKSTL N L + + P P T + + + +
Sbjct: 8 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVF 57
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 39.4 bits (91), Expect = 2e-04
Identities = 22/106 (20%), Positives = 34/106 (32%), Gaps = 16/106 (15%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS 84
+KI ++G VGKS L + I+ V+I ++ +
Sbjct: 3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVK---------- 52
Query: 85 AVPAFLEIHDIAGLVRGAHEGQGAFEDPD-IIHVDDSVDPVRDLEV 129
L+I D AG R + II V D D +
Sbjct: 53 -----LQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNI 93
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 39.0 bits (90), Expect = 3e-04
Identities = 19/153 (12%), Positives = 50/153 (32%), Gaps = 16/153 (10%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS 84
K+ ++G VGK+ + ++ A + I+ + + +R +
Sbjct: 7 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIK---------- 56
Query: 85 AVPAFLEIHDIAGLVRGAHEGQGAFEDPD-IIHVDDSVDPVRDLEVISAELRLKDIEFME 143
L+I D AG R + I+ V D + + + +++ +
Sbjct: 57 -----LQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASAD 111
Query: 144 RRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQ 176
+ ++ +Q+ E + ++
Sbjct: 112 VEKMILGNKCDVNDKRQVSKERGEKLALDYGIK 144
>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 299
Score = 38.7 bits (89), Expect = 7e-04
Identities = 17/140 (12%), Positives = 39/140 (27%), Gaps = 4/140 (2%)
Query: 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSA 85
+I +VG + GKS++ T P ++ + K
Sbjct: 28 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFT 87
Query: 86 VPAFLEIHDIAGLVRGAHEGQGAFEDPDIIHVDDSVDP----VRDLEVISAELRLKDIEF 141
+ + A R +G P + V V + + + +
Sbjct: 88 DFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDI 147
Query: 142 MERRIEDVEKSMKRSNDKQL 161
+ + + + + + N L
Sbjct: 148 EFQIRDMLMQFVTKENCLIL 167
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 37.8 bits (86), Expect = 0.001
Identities = 20/94 (21%), Positives = 28/94 (29%), Gaps = 10/94 (10%)
Query: 5 ASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAEN--FPFCTIEPN 62
A K ++ P +I + G NVGKS+ N+L A P T N
Sbjct: 12 AVKPEQYPEGGLP--------EIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLN 63
Query: 63 EARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIA 96
+N + F S I
Sbjct: 64 FYIINDELHFVDVPGYGFAKVSKSEREAWGRMIE 97
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 38.6 bits (89), Expect = 0.001
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47
SS L + + G GKS+ NTL +
Sbjct: 54 SSVLNVAVTGETGSGKSSFINTLRGI 79
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 37.2 bits (85), Expect = 0.001
Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 15/73 (20%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS 84
KI I+G +VGK++ + I+ + D+R +
Sbjct: 6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIK---------- 55
Query: 85 AVPAFLEIHDIAG 97
L+I D AG
Sbjct: 56 -----LQIWDTAG 63
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 37.1 bits (85), Expect = 0.001
Identities = 21/102 (20%), Positives = 31/102 (30%), Gaps = 16/102 (15%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS 84
LKI I+G VGKS+L T E ++ +++ + +
Sbjct: 8 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAK---------- 57
Query: 85 AVPAFLEIHDIAGLVR-GAHEGQGAFEDPDIIHVDDSVDPVR 125
L I D AG R +I V D
Sbjct: 58 -----LAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDT 94
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 37.0 bits (84), Expect = 0.001
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTI 59
+++ +VGL GK+T N + + P
Sbjct: 3 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGF 37
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 36.6 bits (83), Expect = 0.002
Identities = 12/54 (22%), Positives = 19/54 (35%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ 78
++I +VGL GK+T+ L I NI ++ Q
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ 54
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 37.0 bits (84), Expect = 0.002
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTK 46
LG + K+ +GL N GK+TL + L
Sbjct: 7 LGLYKKTGKLVFLGLDNAGKTTLLHMLKD 35
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 36.8 bits (84), Expect = 0.002
Identities = 10/51 (19%), Positives = 21/51 (41%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW 75
K+ ++G VGKS L + T+ E+ +E + + + +
Sbjct: 5 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKA 55
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 36.5 bits (83), Expect = 0.002
Identities = 27/166 (16%), Positives = 47/166 (28%), Gaps = 11/166 (6%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTK-LAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPK 83
+KI I G P VGK+TL + + L A F + E + +
Sbjct: 1 MKIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFS 60
Query: 84 SAVPAFLEIHDIAGLVRGAHEGQGAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFME 143
S ++ G+ E +VI + K F +
Sbjct: 61 SKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRR----KVIIIDEIGKMELFSK 116
Query: 144 RRIEDVEKSMKRSNDKQLKIEH-----ELCQRVKAWLQDGKDVRLG 184
+ + V + M N + L + + L + L
Sbjct: 117 KFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEI-RRLPGAVLIELT 161
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 36.6 bits (83), Expect = 0.002
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTK 46
++I I+GL GK+T+ L
Sbjct: 6 MRILILGLDGAGKTTILYRLQV 27
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 36.2 bits (82), Expect = 0.002
Identities = 11/54 (20%), Positives = 23/54 (42%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ 78
+K+ +VG VGKS++ K + ++ E ++ + DE +
Sbjct: 3 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLW 56
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 36.2 bits (82), Expect = 0.002
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 24 HLKIGIVGLPNVGKSTLFNTLTKLA 48
++ +GI G + GK+TL LT++A
Sbjct: 5 NINLGIFGHIDHGKTTLSKVLTEIA 29
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 36.2 bits (82), Expect = 0.003
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTK 46
L++ ++GL N GK+T+
Sbjct: 3 LRLLMLGLDNAGKTTILKKFNG 24
>d1wxqa2 d.15.10.2 (A:320-395) GTP-binding protein PH0525
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 76
Score = 33.5 bits (77), Expect = 0.005
Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 17/66 (25%)
Query: 297 CWQIRRQTKAPQAAGTIHTDFERGFICAEVMKFDDLKELGSEPAVKAAGKYKQEGKTYVV 356
+ +++ + A +HTD +GF+ A A ++ G+ Y +
Sbjct: 23 VFLMKKGSTPRDLAFKVHTDLGKGFLYA-----------------INARTKRRVGEDYEL 65
Query: 357 QDGDII 362
Q DI+
Sbjct: 66 QFNDIV 71
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 35.3 bits (80), Expect = 0.005
Identities = 14/106 (13%), Positives = 31/106 (29%), Gaps = 15/106 (14%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS 84
K ++G GKS L + + ++ +E +N+ + +
Sbjct: 6 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVK---------- 55
Query: 85 AVPAFLEIHDIAGLVRGAHEGQGAFEDPDIIHVDDSVDPVRDLEVI 130
L+I D AG R + + + + +
Sbjct: 56 -----LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNAL 96
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 35.1 bits (79), Expect = 0.006
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 26 KIGIVGLPNVGKSTLFNTLTK 46
K+ +GL N GK+TL + L
Sbjct: 2 KLLFLGLDNAGKTTLLHMLKN 22
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 34.9 bits (79), Expect = 0.006
Identities = 11/54 (20%), Positives = 21/54 (38%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ 78
K I+G VGKS L + T+ A+ +E + + ++ +
Sbjct: 5 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIW 58
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 34.5 bits (78), Expect = 0.008
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 24 HLKIGIVGLPNVGKSTLFNTLTK 46
++I ++GL N GK+TL L
Sbjct: 16 EVRILLLGLDNAGKTTLLKQLAS 38
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 34.9 bits (79), Expect = 0.009
Identities = 20/143 (13%), Positives = 46/143 (32%), Gaps = 7/143 (4%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW--LCQLFKP 82
+KI ++G GKST L ++ I P T +E I + F+ +
Sbjct: 3 VKILLLGAGESGKSTF---LKQMRIIHGQDP--TKGIHEYDFEIKNVPFKMVDVGGQRSE 57
Query: 83 KSAVPAFLEIHDIAGLVRGAHEGQGAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFM 142
+ + + + E + + + + V + I
Sbjct: 58 RKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILF 117
Query: 143 ERRIEDVEKSMKRSNDKQLKIEH 165
+ + +E+ ++ + K +E
Sbjct: 118 LNKTDLLEEKVQVVSIKDYFLEF 140
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 34.2 bits (77), Expect = 0.009
Identities = 14/54 (25%), Positives = 21/54 (38%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ 78
KI ++G NVGK+ L P ++ E V+I ER +
Sbjct: 3 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLW 56
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 34.3 bits (77), Expect = 0.011
Identities = 9/51 (17%), Positives = 19/51 (37%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW 75
LK+ I+G VGK++L + + + V + ++
Sbjct: 3 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVAT 53
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 34.1 bits (77), Expect = 0.013
Identities = 18/93 (19%), Positives = 28/93 (30%), Gaps = 5/93 (5%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS 84
+K+ +G VGK+T T + I+ E RV +
Sbjct: 6 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 65
Query: 85 AVPAFLEIHDIAGLVRGAHEGQGAFEDPDIIHV 117
L++ D AG R F D +
Sbjct: 66 -----LQLWDTAGQERFRSLTTAFFRDAMGFLL 93
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 34.1 bits (77), Expect = 0.013
Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 15/73 (20%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS 84
K+ ++G VGKS L + + ++ V + + +
Sbjct: 7 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVK---------- 56
Query: 85 AVPAFLEIHDIAG 97
L+I D AG
Sbjct: 57 -----LQIWDTAG 64
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 184
Score = 33.9 bits (76), Expect = 0.018
Identities = 11/54 (20%), Positives = 18/54 (33%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ 78
LK+ I+G VGK++L N + + V + D
Sbjct: 3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIW 56
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 33.8 bits (76), Expect = 0.023
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 27 IGIVGLPNVGKSTLFNTLTK 46
I +VGLP GK+ + LT+
Sbjct: 5 IVMVGLPARGKTYISKKLTR 24
>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum
[TaxId: 44689]}
Length = 306
Score = 34.0 bits (77), Expect = 0.025
Identities = 20/111 (18%), Positives = 36/111 (32%), Gaps = 6/111 (5%)
Query: 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEAR------VNIPDERFEWLCQL 79
+I +VG + GKS++ + T P + + + EW L
Sbjct: 26 QIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFL 85
Query: 80 FKPKSAVPAFLEIHDIAGLVRGAHEGQGAFEDPDIIHVDDSVDPVRDLEVI 130
KP F EI + G+ I++ V +L ++
Sbjct: 86 HKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLV 136
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 32.7 bits (73), Expect = 0.034
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTK 46
K+ IVGL N GK+T+ +
Sbjct: 16 HKVIIVGLDNAGKTTILYQFSM 37
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 32.7 bits (73), Expect = 0.041
Identities = 14/58 (24%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKP 82
K+ IVG GK+ L +K P P T+ N D + L
Sbjct: 3 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVP--TVFENYVADIEVDGKQVELALWDTA 58
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 32.6 bits (73), Expect = 0.048
Identities = 19/155 (12%), Positives = 47/155 (30%), Gaps = 2/155 (1%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS 84
+K+ ++G GKST+ + + + + D + +
Sbjct: 3 VKLLLLGAGESGKSTIVKQMKIIHEAGTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHC 62
Query: 85 A--VPAFLEIHDIAGLVRGAHEGQGAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFM 142
V A + ++ E + + + + DS+ + S L L +
Sbjct: 63 FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF 122
Query: 143 ERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQD 177
E +I+ ++ E ++ +D
Sbjct: 123 EEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFED 157
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 32.8 bits (74), Expect = 0.049
Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 6/55 (10%)
Query: 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW 75
+ + ++ ++G GKST+ + L + T E + + F
Sbjct: 3 YRATHRLLLLGAGESGKSTIVKQMRILHVVL------TSGIFETKFQVDKVNFHM 51
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 31.9 bits (71), Expect = 0.057
Identities = 11/55 (20%), Positives = 21/55 (38%)
Query: 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ 78
LK+ ++G VGKS++ + + P V +E ++L
Sbjct: 4 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIW 58
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 31.9 bits (71), Expect = 0.066
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLA----IPAENFPFCTIEPNEARVNIPDERFEW 75
L+I I+GL GK+T+ L P F T+ ++N+ D +
Sbjct: 18 LRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQT 72
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 31.8 bits (71), Expect = 0.069
Identities = 13/54 (24%), Positives = 19/54 (35%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ 78
K I+G VGKS L T + +E VNI ++ +
Sbjct: 4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIW 57
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 31.8 bits (71), Expect = 0.075
Identities = 9/54 (16%), Positives = 20/54 (37%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ 78
K+ ++G VGK++L + ++ ++NI +R
Sbjct: 4 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIW 57
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 31.5 bits (70), Expect = 0.079
Identities = 19/149 (12%), Positives = 36/149 (24%), Gaps = 15/149 (10%)
Query: 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSA 85
K+ ++G VGKS+L K V + D ++
Sbjct: 8 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKF---------- 57
Query: 86 VPAFLEIHDIAGLVRGAHEGQGAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERR 145
EI D AG R + V + ++ +
Sbjct: 58 -----EIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNI 112
Query: 146 IEDVEKSMKRSNDKQLKIEHELCQRVKAW 174
+ + + +K+ E
Sbjct: 113 VIALSGNKADLANKRAVDFQEAQSYADDN 141
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 31.5 bits (70), Expect = 0.095
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC 77
+K +VG VGK+ L + T P+E P T+ N A + L
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVP--TVFDNYAVTVMIGGEPYTLG 54
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 32.1 bits (72), Expect = 0.10
Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 1/49 (2%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTK-LAIPAENFPFCTIEPNEARVNIPDER 72
L++G+ G P GKST L ++P+
Sbjct: 55 LRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILG 103
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 31.0 bits (69), Expect = 0.12
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCT 58
K+ +VG VGK+ L A A F
Sbjct: 7 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTV 40
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 31.2 bits (69), Expect = 0.12
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTK 46
+K+ ++G VGKS++
Sbjct: 4 IKLVLLGEAAVGKSSIVLRFVS 25
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 31.1 bits (69), Expect = 0.13
Identities = 8/53 (15%), Positives = 17/53 (32%)
Query: 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ 78
K+ +G +VGK++L + I+ + + D
Sbjct: 2 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLW 54
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 31.1 bits (69), Expect = 0.14
Identities = 5/20 (25%), Positives = 7/20 (35%)
Query: 27 IGIVGLPNVGKSTLFNTLTK 46
+ GK+TL L
Sbjct: 5 LAFAAWSGTGKTTLLKKLIP 24
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 30.7 bits (68), Expect = 0.15
Identities = 12/57 (21%), Positives = 20/57 (35%)
Query: 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ 78
SS K+ ++G VGKS+L N + F +E + +
Sbjct: 4 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIW 60
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 30.8 bits (68), Expect = 0.16
Identities = 7/53 (13%), Positives = 16/53 (30%)
Query: 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ 78
K+ +VG GK+T + +E + + ++
Sbjct: 5 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVW 57
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 30.9 bits (68), Expect = 0.17
Identities = 12/57 (21%), Positives = 21/57 (36%)
Query: 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKP 82
++ ++G VGKSTL N + ++ E R + D + L
Sbjct: 5 RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMW 61
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 30.7 bits (68), Expect = 0.18
Identities = 8/53 (15%), Positives = 14/53 (26%)
Query: 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ 78
++ + G VGKS+L K P + +
Sbjct: 4 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITD 56
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 30.3 bits (67), Expect = 0.21
Identities = 8/26 (30%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 21 FSS-HLKIGIVGLPNVGKSTLFNTLT 45
F + ++I ++GL GK+T+ L
Sbjct: 8 FGNKEMRILMLGLDAAGKTTILYKLK 33
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b,
N-terminal (G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 30.8 bits (68), Expect = 0.21
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAI 49
+ ++G + GK+TL + + A+
Sbjct: 8 VSVLGHVDHGKTTLLDHIRGSAV 30
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 30.7 bits (68), Expect = 0.22
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTK 46
LK+ ++G GKST +
Sbjct: 3 LKLLLLGTGESGKSTFIKQMRI 24
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 30.4 bits (67), Expect = 0.23
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 23 SHLKIGIVGLPNVGKSTLFNTLTK 46
+ +K+ I G VGKS L
Sbjct: 1 AEVKLAIFGRAGVGKSALVVRFLT 24
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top
tamarin (Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 29.9 bits (66), Expect = 0.28
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFC 57
K+ +VG VGKS L + P
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTK 37
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 30.1 bits (66), Expect = 0.28
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 26 KIGIVGLPNVGKSTLFNTLTK 46
K+ ++G P VGKS L
Sbjct: 3 KVLLLGAPGVGKSALARIFGG 23
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 30.0 bits (66), Expect = 0.31
Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ 78
LK +VG VGK+ L + A P E + + V + +++
Sbjct: 10 LKCVVVGDGAVGKTCLLMSYANDAFP-EEYVPTVFDHYAVSVTVGGKQYLLGLY 62
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 30.0 bits (66), Expect = 0.36
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFC 57
+K +VG VGK+ L + T A P E P
Sbjct: 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV 38
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 29.7 bits (65), Expect = 0.38
Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ 78
S KI I+G +VGKS+L + +++ + + + +
Sbjct: 2 SKSRKIAILGYRSVGKSSLTIQFVEGQFV-DSYDPTIENTFTKLITVNGQEYHLQLV 57
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 29.5 bits (65), Expect = 0.41
Identities = 19/166 (11%), Positives = 39/166 (23%), Gaps = 13/166 (7%)
Query: 27 IGIVGLPNVGKSTLFNTLTK-LAIPAENFPFCTIEPNEARVNIP-------DERFEWLCQ 78
+ + G P GKST+ L +P +F + I + +
Sbjct: 7 LLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQI 66
Query: 79 LFKPKSAVPAFLEIHDIAGLVRGAHEGQGAFEDPDIIHVDDSVDPVRDLEVISA-ELRLK 137
+ G+VR + ++ +E
Sbjct: 67 AADVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL 126
Query: 138 DIEFMERRIEDVEKSMKRSNDKQLKIE----HELCQRVKAWLQDGK 179
+ + + L + + Q LQ G+
Sbjct: 127 SDPLVVADLHSQFADLGAFEHHVLPVSGKDTDQALQSAINALQSGR 172
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 29.4 bits (65), Expect = 0.43
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 27 IGIVGLPNVGKSTLFNTLTK 46
+VG + GK+TL
Sbjct: 4 WQVVGYKHSGKTTLMEKWVA 23
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 29.8 bits (67), Expect = 0.46
Identities = 12/45 (26%), Positives = 16/45 (35%), Gaps = 4/45 (8%)
Query: 12 PAERPILGRFSSHLK----IGIVGLPNVGKSTLFNTLTKLAIPAE 52
IL S + I G GKST+F+ L + P
Sbjct: 12 DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTA 56
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB
{Methylobacterium extorquens [TaxId: 408]}
Length = 323
Score = 29.9 bits (66), Expect = 0.49
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTK 46
+++GI G+P VGKST + L
Sbjct: 52 IRVGITGVPGVGKSTTIDALGS 73
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 29.5 bits (66), Expect = 0.52
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 13 AERPILGRFSSHLK----IGIVGLPNVGKSTLFNTLTKL 47
AE LG S ++ + +VG GKSTL + +
Sbjct: 10 AESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM 48
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 29.2 bits (64), Expect = 0.55
Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKP 82
K+ +VG VGKS L L + E P IE + + + D L L
Sbjct: 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPT--IEDSYRKQVVIDGETCLLDILDTA 59
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 29.2 bits (65), Expect = 0.61
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 5/47 (10%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIPAE-----NFPFCTIEPNEARVNI 68
G++G GK+T ++ L P+ EP+E R I
Sbjct: 31 FGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI 77
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 28.9 bits (63), Expect = 0.62
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 26 KIGIVGLPNVGKSTLFNTLTK 46
K+ +VG VGKS L +
Sbjct: 8 KLVVVGGGGVGKSALTIQFIQ 28
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 29.1 bits (64), Expect = 0.63
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 26 KIGIVGLPNVGKSTLFNTLTK 46
K+ ++G VGKS L
Sbjct: 5 KVVVLGSGGVGKSALTVQFVT 25
>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis
[TaxId: 1423]}
Length = 273
Score = 29.4 bits (65), Expect = 0.68
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 24 HLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEW 75
++ I+G+PNVGKSTL N L K I + P T +V E +
Sbjct: 112 AIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGKELELLDT 164
>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu),
N-terminal (G) domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 196
Score = 28.8 bits (64), Expect = 0.69
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 24 HLKIGIVGLPNVGKSTLFNTLTKLA 48
H+ +G +G + GK+TL +TK+
Sbjct: 3 HVNVGTIGHVDHGKTTLTAAITKIL 27
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 28.5 bits (62), Expect = 0.91
Identities = 14/54 (25%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ 78
KI +VG GK+ L + K P P T+ N D + L
Sbjct: 3 CKIVVVGDSQCGKTALLHVFAKDCFPENYVP--TVFENYTASFEIDTQRIELSL 54
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 28.4 bits (62), Expect = 0.91
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 20 RFSSHLKIGIVGLPNVGKSTLFNTLTK 46
R L++G++G GKS+L +
Sbjct: 1 RSIPELRLGVLGDARSGKSSLIHRFLT 27
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895
{Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 28.7 bits (64), Expect = 0.92
Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 14 ERPILGRFSSHLK----IGIVGLPNVGKSTLFNTLTKLAIP 50
++P+L R + ++ + G +GK+TL T++ P
Sbjct: 13 DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP 53
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 28.1 bits (61), Expect = 1.1
Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 5/93 (5%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAV 86
I +G P GKST A+N F I ++ R +I + K K +
Sbjct: 5 ILTIGCPGSGKSTWAREFI-----AKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGI 59
Query: 87 PAFLEIHDIAGLVRGAHEGQGAFEDPDIIHVDD 119
++ ++ G +G ++ +
Sbjct: 60 VTGMQFDTAKSILYGGDSVKGVIISDTNLNPER 92
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 208
Score = 28.2 bits (62), Expect = 1.1
Identities = 29/171 (16%), Positives = 47/171 (27%), Gaps = 14/171 (8%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAV 86
I + GL GKSTL L A D L + S
Sbjct: 27 IWLTGLSASGKSTLAVELEH--------QLVRDRRVHAYRLDGDNIRFGLNK-DLGFSEA 77
Query: 87 PAFLEIHDIAGLVRGAHEGQGAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRI 146
I IA + + + I D R L ++ + F+E +
Sbjct: 78 DRNENIRRIAEVAKLFADSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYV 137
Query: 147 E-DVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWKAADIEILNT 196
+ VE + +R K +K + G ++ + N
Sbjct: 138 DVPVEVAEQRDPKGLYKKAR--EGVIKEF--TGISAPYEAPANPEVHVKNY 184
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 28.4 bits (62), Expect = 1.1
Identities = 38/227 (16%), Positives = 62/227 (27%), Gaps = 32/227 (14%)
Query: 29 IVGLPNVGKSTL-FNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAV 86
+ G GK+ L I E F T E + F W
Sbjct: 31 VSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKL------ 84
Query: 87 PAFLEIHDIAGLVRGAHEGQGAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRI 146
+ G A DP+ V D +E I R
Sbjct: 85 -----------VDEGKLFILDASPDPEGQEVVGGFDLSALIERI---NYAIQKYRARRVS 130
Query: 147 EDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWKAADIEILNTFQLLTAKP-- 204
D S+ + D + EL + V Q G + + + + + +
Sbjct: 131 IDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDN 190
Query: 205 VVYLVNMNEKDYQRK-----KNK---FLPKIHAWVQEHGGEQIIPFS 243
VV L N+ E + +R+ K + + + + G I P
Sbjct: 191 VVILRNVLEGERRRRTLEILKLRGTSHMKGEYPFTITDHGINIFPLG 237
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 28.4 bits (62), Expect = 1.2
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 27 IGIVGLPNVGKSTLFNTLTK 46
+ VG GK+TL +
Sbjct: 3 VVFVGTAGSGKTTLTGEFGR 22
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 28.3 bits (63), Expect = 1.2
Identities = 8/42 (19%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 15 RPILGRFSSHLK----IGIVGLPNVGKSTLFNTLTKLAIPAE 52
P+L + +++ + I G GK++L + +E
Sbjct: 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASE 90
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 28.1 bits (61), Expect = 1.3
Identities = 10/53 (18%), Positives = 15/53 (28%), Gaps = 1/53 (1%)
Query: 27 IGIVGLPNVGKSTLFNTLTK-LAIPAENFPFCTIEPNEARVNIPDERFEWLCQ 78
I + G + GKS + L L P F ++ E
Sbjct: 6 IILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDA 58
>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 162
Score = 27.5 bits (60), Expect = 1.7
Identities = 18/120 (15%), Positives = 37/120 (30%), Gaps = 6/120 (5%)
Query: 26 KIGIVGLPNVGKSTLFNTLTK--LAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPK 83
+I +GL ++G N L L + A + + +
Sbjct: 3 QIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVI 62
Query: 84 SAVPAFLEIHDIAGLVRGAHEGQGAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFME 143
S +PA + + +G A P + ++ S I A R + + ++
Sbjct: 63 SMLPASQHVEG----LYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLD 118
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu),
N-terminal (G) domain {Thermus thermophilus [TaxId:
274]}
Length = 204
Score = 28.0 bits (62), Expect = 1.7
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 24 HLKIGIVGLPNVGKSTLFNTLTK 46
H+ +G +G + GK+TL LT
Sbjct: 3 HVNVGTIGHVDHGKTTLTAALTY 25
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 27.7 bits (60), Expect = 1.7
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 26 KIGIVGLPNVGKSTLFNTLTK 46
++ +VG VGKS L +
Sbjct: 7 RLVVVGGGGVGKSALTIQFIQ 27
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 169
Score = 27.7 bits (60), Expect = 1.8
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 26 KIGIVGLPNVGKSTLFNTLTK 46
K+ +VG VGKS L +
Sbjct: 6 KLVVVGDGGVGKSALTIQFFQ 26
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 27.7 bits (60), Expect = 1.9
Identities = 24/191 (12%), Positives = 54/191 (28%), Gaps = 13/191 (6%)
Query: 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSA 85
+ I+G + GKS L N L + N R + ++ +
Sbjct: 9 TVAILGGESSGKSVLVNKLAAVF----NTTSA---WEYGREFVFEKLGGDEQAMQYSDYP 61
Query: 86 VPAFLEIHDIAGLVRGAHEGQGAFEDPDII-----HVDDSVDPVRDLEVISAELRLKDIE 140
A I VR +H+ D + P D + + +
Sbjct: 62 QMALGHQRYIDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILL 121
Query: 141 FMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWKAADIEILNTF-QL 199
D S ++ + + L + + + ++ + ++ ++
Sbjct: 122 KNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQVKAVIEKV 181
Query: 200 LTAKPVVYLVN 210
L + + L N
Sbjct: 182 LNEEEISELQN 192
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 28.0 bits (62), Expect = 1.9
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIPAE 52
I+G GKSTL N +T E
Sbjct: 33 TLIIGPNGSGKSTLINVITGFLKADE 58
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 27.6 bits (60), Expect = 2.0
Identities = 28/210 (13%), Positives = 59/210 (28%), Gaps = 45/210 (21%)
Query: 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER-FEWLCQLFKPKS 84
I + G P VGK+TL L + + + D E+ C +
Sbjct: 6 NILLTGTPGVGKTTLGKELAS----KSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDR 61
Query: 85 AVPAFLEIHDIAGLVRGAHEGQGAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMER 144
V G++ H E I D E RL+ + E+
Sbjct: 62 VVDELDNQMREGGVIVDYHGCDFFPERWFHIVFVLRTDTNVLYE------RLETRGYNEK 115
Query: 145 RIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWKAADIEILNTFQLLTAKP 204
++ D N + + + ++ + ++ +
Sbjct: 116 KLTD--------NIQCEIFQVLYEEATASY-----------KEEIVHQLPSN-------- 148
Query: 205 VVYLVNMNEKDYQRKKNKFLPKIHAWVQEH 234
++ + ++ L I W+++H
Sbjct: 149 -------KPEELENNVDQILKWIEQWIKDH 171
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 27.6 bits (61), Expect = 2.1
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 12 PAERPILGRFSSHLK----IGIVGLPNVGKSTLFNTLTKLAIP 50
P IL + +K IGIVG GKSTL + + IP
Sbjct: 13 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP 55
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 27.3 bits (59), Expect = 2.2
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 26 KIGIVGLPNVGKSTLFNTLTK 46
K+ ++G VGKS L +
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQ 25
>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus
[TaxId: 10335]}
Length = 331
Score = 27.7 bits (61), Expect = 2.2
Identities = 11/49 (22%), Positives = 16/49 (32%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73
L+I + G +GK+T N EP N+ E
Sbjct: 6 LRIYLDGAYGIGKTTAAEEFLHHFAITPNRILLIGEPLSYWRNLAGEDA 54
>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Archaeon Pyrococcus abyssi
[TaxId: 29292]}
Length = 195
Score = 27.3 bits (59), Expect = 2.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 24 HLKIGIVGLPNVGKSTLFNTLTK 46
+ IG+VG + GK+TL LT
Sbjct: 5 EVNIGMVGHVDHGKTTLTKALTG 27
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC
transporter MsbA, C-terminal domain {Salmonella
typhimurium [TaxId: 90371]}
Length = 253
Score = 27.5 bits (61), Expect = 2.5
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Query: 12 PAERPILGRFSSHLK----IGIVGLPNVGKSTLFNTLTKLAIPAEN 53
E P L + + + +VG GKST+ + +T+ E
Sbjct: 25 GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEG 70
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022,
N-terminal domain {Pyrococcus horikoshii [TaxId:
53953]}
Length = 239
Score = 27.4 bits (61), Expect = 2.6
Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 11/61 (18%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAV 86
+ ++G GK+T + L EP E R+ D +L + S V
Sbjct: 35 LVLLGPSGCGKTTTLRMIAGL-----------EEPTEGRIYFGDRDVTYLPPKDRNISMV 83
Query: 87 P 87
Sbjct: 84 F 84
>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Sulfolobus solfataricus [TaxId:
2287]}
Length = 205
Score = 27.2 bits (59), Expect = 2.9
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 24 HLKIGIVGLPNVGKSTLFNTLTKL 47
+ IG+VG + GK+TL +T +
Sbjct: 8 EVNIGVVGHVDHGKTTLVQAITGI 31
>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha,
N-terminal (G) domain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 239
Score = 27.3 bits (60), Expect = 2.9
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 19 GRFSSHLKIGIVGLPNVGKSTL 40
G+ SH+ + ++G + GKST
Sbjct: 1 GKEKSHINVVVIGHVDSGKSTT 22
>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain
{Adeno-associated virus 2, AAV2 [TaxId: 10804]}
Length = 267
Score = 27.2 bits (60), Expect = 3.2
Identities = 13/72 (18%), Positives = 22/72 (30%), Gaps = 11/72 (15%)
Query: 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKL-------AIPAENFPFCTIEPNEARVNIPDE 71
+F I + G GK+ + + ENFPF + V +E
Sbjct: 99 KKFGKRNTIWLFGPATTGKTNIAEAIAHTVPFYGCVNWTNENFPFNDCV--DKMVIWWEE 156
Query: 72 --RFEWLCQLFK 81
+ + K
Sbjct: 157 GKMTAKVVESAK 168
>d1zs4a1 a.35.1.9 (A:4-81) Regulatory protein cII {Bacteriophage
lambda [TaxId: 10710]}
Length = 78
Score = 25.6 bits (56), Expect = 3.3
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 187 KAADIE--ILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKI 227
+A IE +LN +L + V +++ R K ++PK
Sbjct: 6 EALRIESALLNKIAMLGTEKTAEAVGVDKSQISRWKRDWIPKF 48
>d1j5pa4 c.2.1.3 (A:-1-108,A:220-241) Hypothetical protein TM1643
{Thermotoga maritima [TaxId: 2336]}
Length = 132
Score = 26.2 bits (57), Expect = 3.5
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 24 HLKIGIVGLPNVGKS 38
H+ + I+G+ N+GK
Sbjct: 2 HMTVLIIGMGNIGKK 16
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 26.8 bits (58), Expect = 3.6
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 27 IGIVGLPNVGKSTLFNTLTKL 47
IG+ G GKS++ + +L
Sbjct: 5 IGVSGGTASGKSSVCAKIVQL 25
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 26.8 bits (59), Expect = 3.7
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIP 50
+ ++G GK+T + + L
Sbjct: 35 VTLIGANGAGKTTTLSAIAGLVRA 58
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase
(APS kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 26.6 bits (57), Expect = 4.1
Identities = 8/49 (16%), Positives = 17/49 (34%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW 75
+ + GL GK+T+ L + + + N + + F
Sbjct: 22 VWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSP 70
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 26.8 bits (59), Expect = 4.2
Identities = 9/46 (19%), Positives = 17/46 (36%), Gaps = 4/46 (8%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72
+ ++G GK+T + L E I + V P++
Sbjct: 32 MILLGPSGCGKTTTLRMIAGL----EEPSRGQIYIGDKLVADPEKG 73
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 26.7 bits (59), Expect = 4.3
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 12 PAERPILGRFSSHLK----IGIVGLPNVGKSTLFNTLTKLAIPAE 52
E PIL + ++ + VG+ GKSTL N + +
Sbjct: 28 DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTS 72
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 26.6 bits (57), Expect = 4.4
Identities = 14/90 (15%), Positives = 25/90 (27%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAV 86
+GI GL GK+TL N L++ +
Sbjct: 25 LGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQW 84
Query: 87 PAFLEIHDIAGLVRGAHEGQGAFEDPDIIH 116
H + ++ +H+ F D +
Sbjct: 85 DVEWLTHQLFRQLKASHQLTLPFYDHETDT 114
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 26.6 bits (58), Expect = 4.5
Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 3/22 (13%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLA 48
I +VG+ GK+T + KLA
Sbjct: 14 IMVVGVNGTGKTT---SCGKLA 32
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 26.6 bits (58), Expect = 4.7
Identities = 25/149 (16%), Positives = 52/149 (34%), Gaps = 25/149 (16%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLA--IPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS 84
I +VG+ VGK+T T+ KLA + + R ++ W + P
Sbjct: 12 ILMVGVNGVGKTT---TIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVI 68
Query: 85 AVPAFLEIHDIAGLVRGAHEGQGAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMER 144
A + + A + + D++ D RL++ +
Sbjct: 69 AQHTGADSASVIFDAIQAAKARNI----DVLIAD--TAG-----------RLQNKSHLME 111
Query: 145 RIEDVEKSMKRSNDKQLKIEHELCQRVKA 173
++ + + MK+ + + HE+ + A
Sbjct: 112 ELKKIVRVMKKLDVEA---PHEVMLTIDA 137
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 26.4 bits (58), Expect = 5.4
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 26 KIGIVGLPNVGKSTLFNTLTKLAIP 50
+VG GKST+ L L P
Sbjct: 42 VTALVGPNGSGKSTVAALLQNLYQP 66
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 26.2 bits (57), Expect = 5.8
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLA 48
+ +VG+ VGK+T T+ KL
Sbjct: 9 VLVVGVNGVGKTT---TIAKLG 27
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 26.1 bits (57), Expect = 6.0
Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 4/69 (5%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAV 86
+ VG GKSTL + L E + E R+N + +F+ +
Sbjct: 29 VVFVGPSGCGKSTLLRMIAGL----ETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALY 84
Query: 87 PAFLEIHDI 95
P ++
Sbjct: 85 PHLSVAENM 93
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 26.2 bits (57), Expect = 6.1
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIP 50
GI+G GK+T + L +P
Sbjct: 34 FGILGPSGAGKTTFMRIIAGLDVP 57
>d2gyqa1 a.25.1.4 (A:1-160) Hypothetical ptotein RPA3308
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 160
Score = 25.9 bits (57), Expect = 6.4
Identities = 8/37 (21%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 136 LKDIEFMERRIEDVEKSM-KRSNDKQLK--IEHELCQ 169
L+DI + E++I M +++ ++ L + L +
Sbjct: 19 LRDIYYAEQQITKALPKMIEQATNRDLSQGLTSHLEE 55
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 26.0 bits (57), Expect = 6.7
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIPAE 52
I I+G GKST + L P+E
Sbjct: 31 ISIIGSSGSGKSTFLRCINFLEKPSE 56
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter
sphaeroides [TaxId: 1063]}
Length = 288
Score = 26.1 bits (57), Expect = 7.2
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE 60
I + G G ST+ +T ++ E +IE
Sbjct: 7 ISVTGSSGAGTSTVKHTFDQI-FRREGVKAVSIE 39
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 25.8 bits (56), Expect = 7.6
Identities = 5/24 (20%), Positives = 9/24 (37%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIP 50
I+G GK+ + +P
Sbjct: 29 FVILGPTGAGKTLFLELIAGFHVP 52
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 25.9 bits (56), Expect = 7.7
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 3/22 (13%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLA 48
I +VG+ GK+T T KLA
Sbjct: 15 IMLVGVQGTGKAT---TAGKLA 33
>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4
[TaxId: 10331]}
Length = 333
Score = 26.1 bits (57), Expect = 8.2
Identities = 9/49 (18%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73
++I + G+ +GKST + A + EP + +
Sbjct: 7 VRIYLDGVYGIGKSTTGRVMAS-AASGGSPTLYFPEPMAYWRTLFETDV 54
>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding
protein 1 (GBP1), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 277
Score = 25.8 bits (56), Expect = 8.2
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 27 IGIVGLPNVGKSTLFNTL 44
+ IVGL GKS L N L
Sbjct: 35 VAIVGLYRTGKSYLMNKL 52
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 25.7 bits (55), Expect = 8.6
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLA 48
+ + G P VGK+TL + +++
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVL 25
>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312
{Thermotoga maritima [TaxId: 2336]}
Length = 181
Score = 25.6 bits (55), Expect = 9.1
Identities = 8/56 (14%), Positives = 17/56 (30%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLF 80
+++GIVG + L L+ E + + A + +
Sbjct: 4 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSY 59
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 25.6 bits (55), Expect = 9.3
Identities = 8/50 (16%), Positives = 13/50 (26%), Gaps = 4/50 (8%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL 76
+ VG P GKST + + + + L
Sbjct: 17 VVAVGFPGAGKSTFIQEHLV----SAGYVHVNRDTLGSWQRCVSSCQAAL 62
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.411
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,465,176
Number of extensions: 71249
Number of successful extensions: 444
Number of sequences better than 10.0: 1
Number of HSP's gapped: 434
Number of HSP's successfully gapped: 160
Length of query: 374
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 287
Effective length of database: 1,213,086
Effective search space: 348155682
Effective search space used: 348155682
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.2 bits)