Query 017296
Match_columns 374
No_of_seqs 143 out of 1683
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 07:19:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017296.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017296hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 1E-45 2.2E-50 313.8 23.7 347 7-368 104-479 (480)
2 KOG0286 G-protein beta subunit 100.0 5.2E-42 1.1E-46 282.0 31.4 297 9-368 46-343 (343)
3 KOG0272 U4/U6 small nuclear ri 100.0 2.2E-40 4.7E-45 284.6 21.5 286 15-368 172-458 (459)
4 KOG0265 U5 snRNP-specific prot 100.0 3.1E-37 6.7E-42 254.8 25.3 293 9-367 38-335 (338)
5 KOG0295 WD40 repeat-containing 100.0 2E-36 4.4E-41 255.8 23.0 295 5-368 95-404 (406)
6 KOG0279 G protein beta subunit 100.0 7.9E-35 1.7E-39 238.3 30.8 294 8-370 5-313 (315)
7 KOG0315 G-protein beta subunit 100.0 1.2E-34 2.7E-39 233.6 28.5 277 31-372 11-290 (311)
8 KOG0285 Pleiotropic regulator 100.0 6.6E-35 1.4E-39 246.2 24.9 290 9-370 142-439 (460)
9 KOG0271 Notchless-like WD40 re 100.0 8.4E-35 1.8E-39 247.5 23.7 286 52-370 107-439 (480)
10 KOG0282 mRNA splicing factor [ 100.0 3.9E-36 8.5E-41 262.6 15.2 295 7-368 203-503 (503)
11 KOG0319 WD40-repeat-containing 100.0 1.6E-34 3.4E-39 264.0 22.5 345 10-371 184-578 (775)
12 KOG0263 Transcription initiati 100.0 5.1E-34 1.1E-38 263.0 22.6 255 5-371 365-650 (707)
13 KOG0272 U4/U6 small nuclear ri 100.0 2.5E-34 5.4E-39 247.4 17.7 248 9-326 208-458 (459)
14 KOG0273 Beta-transducin family 100.0 5.9E-33 1.3E-37 242.0 25.6 295 8-372 168-484 (524)
15 KOG0291 WD40-repeat-containing 100.0 2.4E-31 5.3E-36 243.7 32.2 338 8-371 135-509 (893)
16 PLN00181 protein SPA1-RELATED; 100.0 2.7E-31 5.8E-36 266.9 34.8 292 14-370 479-793 (793)
17 KOG0318 WD40 repeat stress pro 100.0 3.4E-31 7.4E-36 233.9 29.8 352 5-370 177-602 (603)
18 cd00200 WD40 WD40 domain, foun 100.0 2.1E-30 4.5E-35 228.7 34.4 288 11-368 2-289 (289)
19 KOG0643 Translation initiation 100.0 1.9E-32 4.2E-37 223.0 18.6 287 12-369 4-316 (327)
20 KOG0281 Beta-TrCP (transducin 100.0 1.3E-33 2.7E-38 237.7 11.7 232 17-371 196-429 (499)
21 KOG0284 Polyadenylation factor 100.0 8.5E-33 1.9E-37 237.0 17.0 286 18-373 96-383 (464)
22 KOG0316 Conserved WD40 repeat- 100.0 5.4E-31 1.2E-35 211.0 25.2 287 7-368 6-297 (307)
23 KOG0322 G-protein beta subunit 100.0 3.9E-32 8.5E-37 220.9 17.9 313 5-370 1-323 (323)
24 KOG1407 WD40 repeat protein [F 100.0 3.6E-31 7.8E-36 215.0 23.1 287 12-370 14-311 (313)
25 KOG0306 WD40-repeat-containing 100.0 1.8E-30 3.8E-35 238.0 29.5 183 170-373 392-583 (888)
26 KOG0296 Angio-associated migra 100.0 2.8E-30 6.1E-35 218.8 28.5 290 9-370 55-398 (399)
27 KOG0319 WD40-repeat-containing 100.0 3.2E-31 7E-36 242.5 24.3 303 10-369 315-618 (775)
28 KOG0279 G protein beta subunit 100.0 2E-30 4.3E-35 212.5 26.2 256 8-328 53-313 (315)
29 KOG0293 WD40 repeat-containing 100.0 3.1E-31 6.8E-36 227.7 21.7 300 3-372 209-515 (519)
30 KOG0278 Serine/threonine kinas 100.0 2.6E-31 5.7E-36 214.5 17.2 289 11-372 7-299 (334)
31 KOG0276 Vesicle coat complex C 100.0 4E-31 8.6E-36 237.7 19.9 250 10-370 5-257 (794)
32 KOG0313 Microtubule binding pr 100.0 7.5E-30 1.6E-34 217.2 25.5 308 6-370 94-418 (423)
33 KOG0266 WD40 repeat-containing 100.0 1.6E-29 3.4E-34 237.6 30.1 293 10-370 150-454 (456)
34 KOG0315 G-protein beta subunit 100.0 3.1E-29 6.7E-34 202.4 26.4 272 9-349 31-309 (311)
35 KOG0281 Beta-TrCP (transducin 100.0 1.1E-31 2.3E-36 226.1 11.3 252 8-371 227-478 (499)
36 KOG0273 Beta-transducin family 100.0 3.4E-29 7.3E-34 218.6 26.1 279 18-369 235-522 (524)
37 KOG0288 WD40 repeat protein Ti 100.0 1E-30 2.2E-35 224.6 16.2 292 7-368 164-459 (459)
38 KOG0291 WD40-repeat-containing 100.0 2.5E-28 5.4E-33 224.1 30.7 295 9-372 298-614 (893)
39 KOG0306 WD40-repeat-containing 100.0 7.7E-29 1.7E-33 227.3 26.3 292 12-371 367-665 (888)
40 KOG0295 WD40 repeat-containing 100.0 8.1E-30 1.8E-34 215.9 18.0 263 9-327 141-405 (406)
41 KOG0274 Cdc4 and related F-box 100.0 2.1E-28 4.6E-33 229.8 28.1 284 9-372 198-484 (537)
42 KOG0277 Peroxisomal targeting 100.0 5.9E-29 1.3E-33 201.4 20.9 285 22-369 12-308 (311)
43 KOG0318 WD40 repeat stress pro 100.0 1.8E-27 3.9E-32 210.4 31.2 301 11-373 140-563 (603)
44 KOG0263 Transcription initiati 100.0 1.3E-28 2.9E-33 227.4 23.6 209 9-329 442-650 (707)
45 KOG0645 WD40 repeat protein [G 100.0 1.9E-27 4.2E-32 194.3 27.5 290 8-370 4-311 (312)
46 KOG0292 Vesicle coat complex C 100.0 1.1E-28 2.3E-33 229.9 21.9 253 12-372 3-282 (1202)
47 KOG0286 G-protein beta subunit 100.0 2.9E-27 6.2E-32 195.2 27.6 244 54-369 49-302 (343)
48 KOG0268 Sof1-like rRNA process 100.0 2.5E-29 5.4E-34 212.9 14.8 287 6-369 54-344 (433)
49 KOG0292 Vesicle coat complex C 100.0 5.1E-28 1.1E-32 225.4 23.9 279 10-370 43-321 (1202)
50 KOG0647 mRNA export protein (c 100.0 3.7E-27 8E-32 195.4 25.3 278 10-358 19-311 (347)
51 KOG0301 Phospholipase A2-activ 100.0 4E-27 8.7E-32 214.4 25.7 281 8-370 4-288 (745)
52 KOG0316 Conserved WD40 repeat- 100.0 2.2E-27 4.9E-32 190.3 19.3 239 64-373 19-260 (307)
53 KOG0285 Pleiotropic regulator 100.0 1.9E-27 4.1E-32 201.2 19.8 246 56-373 147-392 (460)
54 KOG1036 Mitotic spindle checkp 100.0 1.3E-26 2.8E-31 192.8 22.9 272 17-359 12-293 (323)
55 KOG1446 Histone H3 (Lys4) meth 100.0 3.3E-25 7.1E-30 185.3 31.2 291 9-369 5-302 (311)
56 KOG0284 Polyadenylation factor 100.0 6.3E-28 1.4E-32 207.2 13.6 247 13-328 133-380 (464)
57 KOG0300 WD40 repeat-containing 100.0 1.2E-26 2.5E-31 193.7 20.0 327 9-373 139-479 (481)
58 KOG0274 Cdc4 and related F-box 100.0 2.4E-26 5.3E-31 215.9 24.4 256 8-340 238-494 (537)
59 KOG0772 Uncharacterized conser 99.9 8.2E-26 1.8E-30 199.5 23.0 313 8-367 157-484 (641)
60 KOG0276 Vesicle coat complex C 99.9 1.9E-25 4.1E-30 201.4 22.6 246 11-366 48-295 (794)
61 KOG0265 U5 snRNP-specific prot 99.9 3.8E-25 8.2E-30 183.4 22.3 249 53-370 40-296 (338)
62 KOG0275 Conserved WD40 repeat- 99.9 7.2E-26 1.6E-30 189.5 16.9 287 16-368 211-507 (508)
63 KOG0641 WD40 repeat protein [G 99.9 7.9E-23 1.7E-27 163.4 32.5 294 16-370 30-349 (350)
64 KOG2096 WD40 repeat protein [G 99.9 1.4E-24 2.9E-29 181.5 23.4 306 10-372 78-404 (420)
65 KOG0266 WD40 repeat-containing 99.9 1.3E-24 2.8E-29 204.4 26.3 244 63-372 160-411 (456)
66 PLN00181 protein SPA1-RELATED; 99.9 4.8E-24 1E-28 214.6 32.1 272 39-370 457-738 (793)
67 KOG0308 Conserved WD40 repeat- 99.9 2.4E-25 5.2E-30 201.6 20.1 298 16-371 19-328 (735)
68 KOG0299 U3 snoRNP-associated p 99.9 3.3E-24 7.1E-29 187.2 25.3 287 8-364 132-450 (479)
69 KOG0283 WD40 repeat-containing 99.9 1.1E-24 2.3E-29 203.2 23.4 190 163-373 381-579 (712)
70 KOG0278 Serine/threonine kinas 99.9 1.5E-25 3.2E-30 181.4 14.3 253 9-333 50-302 (334)
71 KOG0640 mRNA cleavage stimulat 99.9 3.5E-24 7.6E-29 178.5 22.1 305 2-369 95-425 (430)
72 PTZ00421 coronin; Provisional 99.9 1.4E-23 3.1E-28 197.0 28.0 144 224-372 141-292 (493)
73 KOG0313 Microtubule binding pr 99.9 3.6E-24 7.8E-29 182.7 21.1 271 8-327 134-417 (423)
74 KOG0264 Nucleosome remodeling 99.9 1.3E-23 2.9E-28 183.2 23.3 255 15-370 121-404 (422)
75 KOG0296 Angio-associated migra 99.9 9.2E-23 2E-27 173.4 26.7 264 9-328 97-398 (399)
76 KOG0650 WD40 repeat nucleolar 99.9 1.6E-23 3.6E-28 188.1 22.9 332 3-368 385-733 (733)
77 KOG0305 Anaphase promoting com 99.9 2.9E-23 6.3E-28 188.8 24.6 243 15-371 214-462 (484)
78 KOG0277 Peroxisomal targeting 99.9 1.3E-24 2.8E-29 176.3 13.7 215 5-327 91-308 (311)
79 KOG0282 mRNA splicing factor [ 99.9 2.2E-24 4.8E-29 189.3 15.5 250 53-370 207-462 (503)
80 PTZ00420 coronin; Provisional 99.9 3.9E-22 8.4E-27 188.3 30.0 234 9-352 65-318 (568)
81 KOG0289 mRNA splicing factor [ 99.9 5.1E-22 1.1E-26 172.3 26.6 285 18-369 219-505 (506)
82 KOG0293 WD40 repeat-containing 99.9 1.1E-23 2.5E-28 181.5 15.0 251 9-329 260-514 (519)
83 KOG0310 Conserved WD40 repeat- 99.9 2.2E-22 4.8E-27 177.0 22.9 280 17-367 25-306 (487)
84 cd00200 WD40 WD40 domain, foun 99.9 1E-21 2.2E-26 173.0 27.5 248 9-326 42-289 (289)
85 KOG1408 WD40 repeat protein [F 99.9 1E-22 2.3E-27 186.3 21.2 350 11-370 71-534 (1080)
86 KOG1063 RNA polymerase II elon 99.9 1.1E-21 2.3E-26 179.3 27.6 300 10-368 46-389 (764)
87 KOG0641 WD40 repeat protein [G 99.9 3.3E-21 7.1E-26 154.2 27.0 256 15-327 86-348 (350)
88 KOG4283 Transcription-coupled 99.9 1.8E-21 3.9E-26 161.3 24.6 296 12-369 37-364 (397)
89 KOG0288 WD40 repeat protein Ti 99.9 7.1E-23 1.5E-27 176.6 16.9 246 8-325 209-458 (459)
90 KOG0645 WD40 repeat protein [G 99.9 1.2E-21 2.5E-26 160.6 23.0 191 162-369 27-224 (312)
91 KOG1446 Histone H3 (Lys4) meth 99.9 2.1E-21 4.6E-26 162.6 25.0 247 63-373 15-265 (311)
92 PTZ00420 coronin; Provisional 99.9 7.6E-21 1.6E-25 179.6 31.1 235 35-372 49-295 (568)
93 KOG2445 Nuclear pore complex c 99.9 3.4E-21 7.4E-26 160.6 24.7 260 15-369 10-317 (361)
94 KOG0321 WD40 repeat-containing 99.9 3.5E-22 7.6E-27 180.9 19.4 284 11-372 93-393 (720)
95 KOG1539 WD repeat protein [Gen 99.9 1.3E-20 2.8E-25 175.5 29.5 339 8-368 192-646 (910)
96 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 6.2E-20 1.4E-24 164.2 30.9 273 30-372 1-281 (300)
97 KOG0299 U3 snoRNP-associated p 99.9 1.5E-21 3.3E-26 170.6 19.4 244 15-327 199-455 (479)
98 KOG0308 Conserved WD40 repeat- 99.9 1.4E-21 2.9E-26 177.5 19.0 189 164-372 87-287 (735)
99 KOG1274 WD40 repeat protein [G 99.9 1E-20 2.2E-25 178.0 25.4 247 15-371 10-263 (933)
100 KOG0294 WD40 repeat-containing 99.9 6E-21 1.3E-25 159.6 19.9 246 9-370 34-281 (362)
101 KOG0310 Conserved WD40 repeat- 99.9 4.4E-21 9.6E-26 168.9 19.5 242 16-327 66-308 (487)
102 KOG1408 WD40 repeat protein [F 99.9 1.2E-20 2.6E-25 173.0 22.8 300 11-369 362-712 (1080)
103 KOG0639 Transducin-like enhanc 99.9 1.3E-21 2.8E-26 172.7 16.0 243 16-369 417-662 (705)
104 KOG1332 Vesicle coat complex C 99.9 2.6E-21 5.7E-26 156.4 16.1 255 12-369 5-285 (299)
105 KOG1517 Guanine nucleotide bin 99.9 1.8E-20 4E-25 178.4 24.4 302 20-372 1066-1383(1387)
106 KOG0643 Translation initiation 99.9 2.7E-20 5.8E-25 152.4 20.8 257 9-328 43-317 (327)
107 PTZ00421 coronin; Provisional 99.9 9.3E-20 2E-24 171.3 26.7 145 223-371 90-246 (493)
108 KOG0269 WD40 repeat-containing 99.9 1.2E-20 2.6E-25 174.5 19.9 287 18-368 39-338 (839)
109 KOG2106 Uncharacterized conser 99.9 4.3E-19 9.3E-24 157.0 28.3 321 10-371 96-478 (626)
110 KOG0973 Histone transcription 99.9 8.3E-20 1.8E-24 175.0 25.3 268 14-371 8-356 (942)
111 KOG0268 Sof1-like rRNA process 99.9 4.5E-21 9.8E-26 163.0 14.4 249 9-333 100-350 (433)
112 KOG0301 Phospholipase A2-activ 99.9 2E-20 4.3E-25 171.1 18.9 178 163-370 72-249 (745)
113 KOG0772 Uncharacterized conser 99.9 2.6E-20 5.6E-25 165.0 18.9 259 64-368 169-443 (641)
114 KOG0646 WD40 repeat protein [G 99.9 3.4E-20 7.3E-25 162.5 18.8 238 18-353 81-332 (476)
115 KOG1407 WD40 repeat protein [F 99.9 8.7E-20 1.9E-24 149.0 19.7 242 64-372 22-263 (313)
116 KOG0300 WD40 repeat-containing 99.9 2.3E-20 4.9E-25 156.3 16.3 256 8-330 180-478 (481)
117 KOG0646 WD40 repeat protein [G 99.9 1.5E-19 3.3E-24 158.4 21.8 187 162-370 93-307 (476)
118 KOG0267 Microtubule severing p 99.9 8.3E-22 1.8E-26 180.8 7.5 185 164-370 42-226 (825)
119 KOG0275 Conserved WD40 repeat- 99.9 9.6E-22 2.1E-26 164.9 7.1 146 222-371 226-379 (508)
120 KOG0289 mRNA splicing factor [ 99.9 1.1E-19 2.4E-24 157.9 20.1 253 9-327 252-505 (506)
121 KOG0264 Nucleosome remodeling 99.9 3.6E-20 7.9E-25 161.9 17.0 198 163-370 138-347 (422)
122 KOG0647 mRNA export protein (c 99.8 1.7E-19 3.6E-24 150.2 19.1 239 12-319 66-315 (347)
123 KOG4328 WD40 protein [Function 99.8 3.7E-19 8.1E-24 155.7 22.2 300 9-368 177-493 (498)
124 KOG1063 RNA polymerase II elon 99.8 3.3E-19 7.1E-24 163.2 22.4 299 12-371 261-649 (764)
125 KOG0283 WD40 repeat-containing 99.8 7.7E-20 1.7E-24 171.0 18.6 208 8-329 359-577 (712)
126 KOG1332 Vesicle coat complex C 99.8 1.5E-19 3.3E-24 146.3 17.1 236 3-327 40-285 (299)
127 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 6E-18 1.3E-22 151.3 28.8 269 8-350 21-300 (300)
128 KOG0267 Microtubule severing p 99.8 1.2E-20 2.6E-25 173.3 10.6 239 12-362 22-260 (825)
129 KOG4283 Transcription-coupled 99.8 1.9E-18 4.2E-23 143.4 22.3 187 164-369 116-333 (397)
130 KOG0270 WD40 repeat-containing 99.8 2.4E-19 5.2E-24 156.3 17.2 212 14-332 239-453 (463)
131 KOG0302 Ribosome Assembly prot 99.8 1.7E-19 3.7E-24 154.2 15.8 199 160-369 163-377 (440)
132 KOG2055 WD40 repeat protein [G 99.8 1.8E-18 3.9E-23 151.6 21.2 288 18-370 213-512 (514)
133 KOG0642 Cell-cycle nuclear pro 99.8 2.5E-19 5.5E-24 160.5 15.2 263 10-372 286-563 (577)
134 KOG0302 Ribosome Assembly prot 99.8 4.9E-18 1.1E-22 145.4 22.2 252 12-366 145-435 (440)
135 KOG0269 WD40 repeat-containing 99.8 8.2E-20 1.8E-24 169.0 10.9 147 223-373 102-253 (839)
136 KOG2096 WD40 repeat protein [G 99.8 1.5E-18 3.2E-23 145.6 16.7 116 250-370 185-308 (420)
137 KOG1273 WD40 repeat protein [G 99.8 6.2E-17 1.3E-21 135.8 24.6 296 9-371 16-323 (405)
138 KOG4378 Nuclear protein COP1 [ 99.8 8E-18 1.7E-22 148.8 19.8 269 36-369 8-279 (673)
139 KOG0305 Anaphase promoting com 99.8 2.1E-17 4.6E-22 150.8 21.8 233 23-370 182-419 (484)
140 KOG2048 WD40 repeat protein [G 99.8 1E-16 2.2E-21 146.8 24.8 245 18-370 25-275 (691)
141 KOG2106 Uncharacterized conser 99.8 7.6E-16 1.6E-20 136.7 28.8 280 10-368 237-519 (626)
142 KOG0294 WD40 repeat-containing 99.8 2E-17 4.4E-22 138.6 17.6 207 8-284 73-283 (362)
143 KOG0270 WD40 repeat-containing 99.8 1.3E-17 2.9E-22 145.5 16.2 144 222-370 257-404 (463)
144 KOG0640 mRNA cleavage stimulat 99.8 8.1E-18 1.8E-22 140.7 13.9 258 9-328 163-426 (430)
145 KOG1240 Protein kinase contain 99.8 1.7E-16 3.7E-21 153.8 23.9 309 9-368 1039-1431(1431)
146 KOG1539 WD repeat protein [Gen 99.8 1.6E-15 3.4E-20 142.1 28.9 299 10-371 106-524 (910)
147 KOG1036 Mitotic spindle checkp 99.8 1.4E-16 3E-21 133.4 19.6 238 63-372 14-264 (323)
148 KOG4227 WD40 repeat protein [G 99.8 1E-16 2.2E-21 138.1 18.5 300 10-369 48-386 (609)
149 KOG1445 Tumor-specific antigen 99.8 3.7E-16 8E-21 142.2 22.8 143 227-369 599-749 (1012)
150 KOG1310 WD40 repeat protein [G 99.8 1.2E-16 2.5E-21 143.1 19.2 86 8-95 40-126 (758)
151 KOG2048 WD40 repeat protein [G 99.7 4.1E-15 8.8E-20 136.4 29.3 256 10-325 60-316 (691)
152 KOG0307 Vesicle coat complex C 99.7 2.6E-17 5.6E-22 158.9 15.3 249 20-330 66-329 (1049)
153 KOG4378 Nuclear protein COP1 [ 99.7 4.7E-16 1E-20 137.7 20.5 266 19-352 35-305 (673)
154 KOG0639 Transducin-like enhanc 99.7 6.8E-17 1.5E-21 143.2 15.2 239 18-369 465-703 (705)
155 KOG2919 Guanine nucleotide-bin 99.7 1.3E-15 2.7E-20 128.4 20.9 286 22-360 53-360 (406)
156 COG2319 FOG: WD40 repeat [Gene 99.7 1.2E-13 2.5E-18 128.4 36.8 294 13-372 60-361 (466)
157 KOG0973 Histone transcription 99.7 1E-16 2.2E-21 154.0 16.0 151 220-370 24-201 (942)
158 KOG0321 WD40 repeat-containing 99.7 3.5E-16 7.5E-21 142.4 16.7 287 12-373 41-350 (720)
159 KOG0644 Uncharacterized conser 99.7 1.5E-16 3.2E-21 148.8 13.8 284 11-370 183-468 (1113)
160 KOG4328 WD40 protein [Function 99.7 3.8E-15 8.1E-20 130.8 20.4 251 63-369 187-449 (498)
161 PRK11028 6-phosphogluconolacto 99.7 8.4E-14 1.8E-18 126.6 30.1 278 33-371 5-305 (330)
162 KOG1007 WD repeat protein TSSC 99.7 1.4E-15 3.1E-20 126.2 16.4 130 223-369 229-360 (370)
163 KOG1188 WD40 repeat protein [G 99.7 8.4E-16 1.8E-20 130.3 14.5 240 31-369 41-345 (376)
164 KOG1334 WD40 repeat protein [G 99.7 6.2E-16 1.4E-20 136.7 13.5 308 10-369 134-465 (559)
165 KOG1034 Transcriptional repres 99.7 2.9E-14 6.2E-19 120.5 20.9 298 12-369 32-382 (385)
166 KOG1587 Cytoplasmic dynein int 99.7 2.7E-14 5.7E-19 134.1 22.7 270 8-371 233-517 (555)
167 KOG0307 Vesicle coat complex C 99.7 1.7E-15 3.6E-20 146.6 14.7 292 23-370 11-327 (1049)
168 KOG0642 Cell-cycle nuclear pro 99.6 1.7E-15 3.8E-20 136.2 12.8 219 9-284 335-563 (577)
169 KOG2055 WD40 repeat protein [G 99.6 2E-14 4.3E-19 126.5 18.0 254 10-328 249-512 (514)
170 COG2319 FOG: WD40 repeat [Gene 99.6 4.2E-12 9E-17 118.0 35.0 289 9-370 146-442 (466)
171 KOG1274 WD40 repeat protein [G 99.6 6.4E-14 1.4E-18 132.8 22.2 241 17-367 55-297 (933)
172 KOG1188 WD40 repeat protein [G 99.6 3.1E-14 6.8E-19 120.9 16.0 192 164-373 42-245 (376)
173 KOG3881 Uncharacterized conser 99.6 3E-13 6.5E-18 117.0 21.5 279 18-350 55-341 (412)
174 KOG2919 Guanine nucleotide-bin 99.6 1.5E-13 3.2E-18 116.0 19.0 191 164-371 125-328 (406)
175 KOG0303 Actin-binding protein 99.6 1.4E-13 2.9E-18 119.1 19.1 218 4-285 67-297 (472)
176 KOG1538 Uncharacterized conser 99.6 3.1E-13 6.7E-18 124.1 22.0 273 20-369 14-292 (1081)
177 KOG1034 Transcriptional repres 99.6 1.7E-13 3.7E-18 115.9 18.5 264 16-328 87-383 (385)
178 KOG0771 Prolactin regulatory e 99.6 4.9E-14 1.1E-18 122.9 15.6 70 300-369 283-353 (398)
179 KOG1517 Guanine nucleotide bin 99.6 7.5E-14 1.6E-18 134.0 18.0 256 18-330 1109-1383(1387)
180 KOG0649 WD40 repeat protein [G 99.6 5.9E-13 1.3E-17 108.3 19.5 139 224-369 129-273 (325)
181 KOG0650 WD40 repeat nucleolar 99.6 6.4E-14 1.4E-18 127.0 14.6 134 228-367 543-677 (733)
182 KOG0303 Actin-binding protein 99.6 2.1E-13 4.7E-18 117.9 16.9 143 223-370 96-249 (472)
183 KOG0290 Conserved WD40 repeat- 99.5 2.5E-13 5.4E-18 113.2 15.1 150 222-372 164-320 (364)
184 KOG1963 WD40 repeat protein [G 99.5 1.3E-11 2.9E-16 116.9 28.2 302 16-372 203-540 (792)
185 KOG2110 Uncharacterized conser 99.5 3.5E-11 7.5E-16 103.7 28.1 283 17-371 4-331 (391)
186 PRK11028 6-phosphogluconolacto 99.5 4E-11 8.8E-16 109.0 30.7 263 10-328 27-304 (330)
187 KOG1538 Uncharacterized conser 99.5 8.4E-13 1.8E-17 121.3 18.3 254 3-328 38-293 (1081)
188 KOG1273 WD40 repeat protein [G 99.5 4.8E-13 1E-17 112.6 14.8 148 222-370 36-226 (405)
189 KOG1009 Chromatin assembly com 99.5 1.2E-13 2.6E-18 119.9 11.4 147 223-369 28-194 (434)
190 PF08662 eIF2A: Eukaryotic tra 99.5 1.6E-12 3.4E-17 108.0 17.0 131 231-370 37-179 (194)
191 KOG1963 WD40 repeat protein [G 99.5 1.8E-11 3.9E-16 116.0 24.4 305 14-371 12-323 (792)
192 KOG2445 Nuclear pore complex c 99.5 1.7E-12 3.6E-17 109.1 15.5 124 249-372 10-146 (361)
193 KOG0649 WD40 repeat protein [G 99.5 2E-12 4.3E-17 105.3 14.2 147 222-371 23-187 (325)
194 KOG2394 WD40 protein DMR-N9 [G 99.5 5.8E-13 1.3E-17 119.5 11.9 145 223-371 234-453 (636)
195 PRK01742 tolB translocation pr 99.5 1E-11 2.2E-16 116.7 20.4 116 226-351 309-426 (429)
196 KOG1587 Cytoplasmic dynein int 99.4 1.9E-11 4.2E-16 115.1 21.6 148 223-370 307-472 (555)
197 KOG2110 Uncharacterized conser 99.4 4.4E-11 9.6E-16 103.0 21.4 142 223-370 99-248 (391)
198 KOG1240 Protein kinase contain 99.4 2.8E-11 6E-16 118.5 21.8 147 223-373 1165-1337(1431)
199 KOG0290 Conserved WD40 repeat- 99.4 1.1E-11 2.4E-16 103.5 16.4 205 16-323 148-360 (364)
200 KOG0644 Uncharacterized conser 99.4 3.4E-13 7.3E-18 126.7 7.0 192 159-372 199-428 (1113)
201 KOG0974 WD-repeat protein WDR6 99.4 1.8E-11 4E-16 117.9 18.1 181 169-369 106-287 (967)
202 KOG2111 Uncharacterized conser 99.4 1.6E-10 3.4E-15 97.9 21.2 101 270-372 155-258 (346)
203 KOG1007 WD repeat protein TSSC 99.4 7.2E-12 1.6E-16 104.5 11.9 140 226-369 139-288 (370)
204 KOG1445 Tumor-specific antigen 99.4 1.2E-11 2.5E-16 113.4 14.3 137 222-362 641-786 (1012)
205 KOG4547 WD40 repeat-containing 99.3 5.7E-10 1.2E-14 101.8 22.4 191 165-369 8-219 (541)
206 KOG2394 WD40 protein DMR-N9 [G 99.3 1E-11 2.2E-16 111.6 10.7 148 224-372 188-364 (636)
207 PRK01742 tolB translocation pr 99.3 3.3E-10 7.1E-15 106.5 20.1 138 224-370 262-401 (429)
208 KOG2111 Uncharacterized conser 99.3 1.8E-08 4E-13 85.5 28.1 101 227-329 155-257 (346)
209 KOG1009 Chromatin assembly com 99.3 4.2E-11 9.1E-16 104.3 12.3 120 252-371 13-154 (434)
210 KOG1523 Actin-related protein 99.3 3.2E-10 7E-15 96.1 17.0 122 251-372 99-238 (361)
211 KOG1272 WD40-repeat-containing 99.3 6.3E-11 1.4E-15 104.9 12.1 260 22-358 133-397 (545)
212 PF02239 Cytochrom_D1: Cytochr 99.3 1.3E-08 2.9E-13 93.0 27.4 281 33-371 9-348 (369)
213 KOG3881 Uncharacterized conser 99.2 5E-10 1.1E-14 97.3 16.7 145 223-371 163-321 (412)
214 KOG1409 Uncharacterized conser 99.2 1.1E-09 2.4E-14 93.8 18.2 255 7-328 13-270 (404)
215 KOG1354 Serine/threonine prote 99.2 6.7E-10 1.5E-14 95.0 16.6 285 18-372 25-361 (433)
216 KOG1310 WD40 repeat protein [G 99.2 3.3E-11 7.2E-16 108.7 9.2 126 246-374 44-182 (758)
217 KOG4227 WD40 repeat protein [G 99.2 1.5E-09 3.2E-14 94.4 18.6 266 6-327 92-386 (609)
218 PF02239 Cytochrom_D1: Cytochr 99.2 2.4E-09 5.2E-14 97.9 20.6 307 9-337 27-356 (369)
219 KOG1523 Actin-related protein 99.2 4E-10 8.6E-15 95.5 13.4 148 222-370 23-176 (361)
220 KOG1524 WD40 repeat-containing 99.2 5.4E-10 1.2E-14 100.8 12.8 141 222-370 76-216 (737)
221 PRK03629 tolB translocation pr 99.2 1.5E-08 3.3E-13 95.2 23.1 114 230-350 308-427 (429)
222 KOG0974 WD-repeat protein WDR6 99.1 1.8E-09 3.9E-14 104.5 14.7 139 223-369 101-245 (967)
223 KOG1524 WD40 repeat-containing 99.1 3.6E-09 7.8E-14 95.6 15.4 127 224-359 119-245 (737)
224 KOG1272 WD40-repeat-containing 99.1 2.1E-10 4.5E-15 101.7 6.6 183 161-370 141-323 (545)
225 KOG0771 Prolactin regulatory e 99.1 1.1E-09 2.3E-14 96.1 10.0 145 223-371 158-312 (398)
226 KOG2139 WD40 repeat protein [G 99.1 1.9E-08 4.2E-13 86.9 17.4 178 165-364 113-305 (445)
227 KOG2321 WD40 repeat protein [G 99.0 8.8E-08 1.9E-12 87.5 22.2 172 173-367 156-340 (703)
228 PF00400 WD40: WD domain, G-be 99.0 6.4E-10 1.4E-14 66.5 5.3 38 9-46 2-39 (39)
229 PRK02889 tolB translocation pr 99.0 7.7E-08 1.7E-12 90.4 21.9 90 255-351 330-425 (427)
230 PF10282 Lactonase: Lactonase, 99.0 8.7E-06 1.9E-10 74.4 34.5 206 160-370 97-322 (345)
231 KOG1064 RAVE (regulator of V-A 99.0 4E-09 8.7E-14 107.2 13.2 132 224-372 2266-2400(2439)
232 PRK04922 tolB translocation pr 99.0 1.1E-07 2.5E-12 89.5 22.1 109 233-350 318-432 (433)
233 TIGR02658 TTQ_MADH_Hv methylam 99.0 7E-06 1.5E-10 73.9 31.7 268 40-371 27-331 (352)
234 PRK02889 tolB translocation pr 99.0 9.7E-08 2.1E-12 89.8 20.3 179 162-362 208-392 (427)
235 PF00400 WD40: WD domain, G-be 99.0 2.4E-09 5.2E-14 64.0 6.2 39 330-368 1-39 (39)
236 KOG2315 Predicted translation 99.0 2.4E-06 5.3E-11 78.1 27.9 129 231-370 251-390 (566)
237 PRK05137 tolB translocation pr 99.0 7.2E-07 1.6E-11 84.2 25.8 128 224-360 261-396 (435)
238 KOG1064 RAVE (regulator of V-A 99.0 6.4E-09 1.4E-13 105.8 12.2 229 12-363 2202-2439(2439)
239 KOG0322 G-protein beta subunit 98.9 1.5E-08 3.3E-13 83.9 12.2 58 223-281 265-322 (323)
240 KOG2139 WD40 repeat protein [G 98.9 2.5E-08 5.4E-13 86.2 13.1 143 224-369 113-267 (445)
241 PF08662 eIF2A: Eukaryotic tra 98.9 1E-07 2.3E-12 79.2 16.4 102 224-336 76-186 (194)
242 KOG3914 WD repeat protein WDR4 98.9 3.7E-08 8.1E-13 86.2 12.8 144 223-372 76-225 (390)
243 PRK05137 tolB translocation pr 98.9 9.6E-07 2.1E-11 83.4 23.6 109 232-350 315-432 (435)
244 PRK03629 tolB translocation pr 98.9 7.9E-07 1.7E-11 83.6 22.3 139 224-369 258-405 (429)
245 PF10282 Lactonase: Lactonase, 98.9 1.6E-05 3.4E-10 72.7 29.8 284 20-348 38-345 (345)
246 KOG0309 Conserved WD40 repeat- 98.8 4.7E-08 1E-12 91.7 12.8 143 224-370 173-339 (1081)
247 COG5170 CDC55 Serine/threonine 98.8 4E-07 8.7E-12 77.4 16.4 287 17-368 25-365 (460)
248 KOG2321 WD40 repeat protein [G 98.8 2.7E-07 5.8E-12 84.4 16.2 146 224-372 148-304 (703)
249 PRK04922 tolB translocation pr 98.8 1.6E-06 3.5E-11 81.8 22.1 139 224-369 263-410 (433)
250 KOG1334 WD40 repeat protein [G 98.8 2E-07 4.2E-12 83.7 13.6 146 223-369 247-423 (559)
251 COG5354 Uncharacterized protei 98.7 1.5E-05 3.3E-10 72.2 23.9 130 230-370 254-395 (561)
252 TIGR02800 propeller_TolB tol-p 98.7 5.5E-06 1.2E-10 77.9 21.3 178 160-363 200-387 (417)
253 KOG4532 WD40-like repeat conta 98.6 1E-05 2.2E-10 67.7 19.0 188 162-369 84-281 (344)
254 TIGR02800 propeller_TolB tol-p 98.6 1.2E-05 2.5E-10 75.7 22.5 132 231-370 214-354 (417)
255 TIGR03300 assembly_YfgL outer 98.6 6.8E-05 1.5E-09 69.5 27.1 304 29-367 64-376 (377)
256 KOG1409 Uncharacterized conser 98.6 1.2E-07 2.6E-12 81.5 7.0 88 5-96 184-272 (404)
257 KOG4714 Nucleoporin [Nuclear s 98.6 8.4E-08 1.8E-12 79.5 5.3 139 223-370 103-254 (319)
258 KOG2695 WD40 repeat protein [G 98.6 1.9E-07 4.2E-12 80.3 7.5 144 226-373 229-379 (425)
259 KOG2314 Translation initiation 98.5 0.00011 2.4E-09 67.6 24.6 133 232-369 426-572 (698)
260 PRK04792 tolB translocation pr 98.5 3.6E-05 7.9E-10 72.8 22.6 88 256-350 353-446 (448)
261 KOG0280 Uncharacterized conser 98.5 6.7E-06 1.4E-10 69.6 15.1 127 222-351 134-264 (339)
262 PRK00178 tolB translocation pr 98.5 5.4E-05 1.2E-09 71.5 23.5 110 232-350 312-427 (430)
263 TIGR03300 assembly_YfgL outer 98.5 0.00025 5.4E-09 65.7 27.1 179 167-372 150-340 (377)
264 KOG0280 Uncharacterized conser 98.5 7.3E-06 1.6E-10 69.4 14.6 146 223-370 87-241 (339)
265 KOG4497 Uncharacterized conser 98.5 2.6E-05 5.7E-10 67.1 18.0 294 23-370 13-391 (447)
266 PLN02919 haloacid dehalogenase 98.5 3.9E-05 8.6E-10 79.6 23.1 148 223-372 697-890 (1057)
267 PRK01029 tolB translocation pr 98.5 4.4E-05 9.5E-10 71.7 21.3 136 232-371 258-404 (428)
268 KOG4497 Uncharacterized conser 98.5 7.2E-06 1.6E-10 70.4 14.1 139 224-368 64-238 (447)
269 KOG4547 WD40 repeat-containing 98.5 1.1E-05 2.4E-10 74.3 16.1 145 223-372 7-174 (541)
270 KOG0882 Cyclophilin-related pe 98.4 2.2E-06 4.8E-11 76.4 11.1 107 227-333 118-236 (558)
271 PRK04792 tolB translocation pr 98.4 7.4E-05 1.6E-09 70.7 22.3 140 223-369 276-424 (448)
272 KOG2041 WD40 repeat protein [G 98.4 1.3E-05 2.9E-10 75.5 16.3 86 9-96 62-147 (1189)
273 TIGR02658 TTQ_MADH_Hv methylam 98.4 0.00048 1E-08 62.2 25.4 109 223-337 208-339 (352)
274 PLN02919 haloacid dehalogenase 98.4 0.00056 1.2E-08 71.3 29.1 109 223-332 754-892 (1057)
275 KOG4532 WD40-like repeat conta 98.4 1.5E-05 3.3E-10 66.6 13.9 142 223-370 86-233 (344)
276 PRK00178 tolB translocation pr 98.3 0.0002 4.4E-09 67.6 22.4 135 224-367 258-401 (430)
277 KOG2315 Predicted translation 98.3 0.00016 3.5E-09 66.6 20.3 114 224-350 287-410 (566)
278 KOG1354 Serine/threonine prote 98.3 4.8E-06 1E-10 71.9 9.5 143 223-369 100-300 (433)
279 PRK01029 tolB translocation pr 98.3 0.00019 4.1E-09 67.5 20.7 137 231-371 211-360 (428)
280 KOG2695 WD40 repeat protein [G 98.2 8.9E-06 1.9E-10 70.3 9.9 127 223-350 266-402 (425)
281 KOG3914 WD repeat protein WDR4 98.2 2.8E-05 6E-10 68.6 12.5 103 228-336 129-231 (390)
282 KOG0309 Conserved WD40 repeat- 98.2 2.2E-05 4.8E-10 74.3 11.8 221 9-282 105-339 (1081)
283 PF11768 DUF3312: Protein of u 98.2 0.00015 3.2E-09 67.6 16.6 69 299-369 260-328 (545)
284 COG4946 Uncharacterized protei 98.2 0.0013 2.8E-08 59.7 21.7 133 230-370 340-477 (668)
285 KOG4190 Uncharacterized conser 98.1 4.3E-06 9.2E-11 76.5 5.3 125 244-370 727-859 (1034)
286 COG5354 Uncharacterized protei 98.1 0.0016 3.6E-08 59.5 21.5 122 224-362 291-421 (561)
287 KOG4714 Nucleoporin [Nuclear s 98.1 0.00049 1.1E-08 57.7 16.1 60 223-282 194-254 (319)
288 COG2706 3-carboxymuconate cycl 98.0 0.0083 1.8E-07 52.8 29.9 284 16-349 37-345 (346)
289 KOG1912 WD40 repeat protein [G 98.0 0.0011 2.4E-08 63.6 19.5 124 223-349 439-572 (1062)
290 KOG2444 WD40 repeat protein [G 98.0 1.2E-05 2.7E-10 65.9 5.9 142 224-370 33-177 (238)
291 smart00320 WD40 WD40 repeats. 98.0 1.4E-05 3E-10 46.3 4.7 38 9-46 3-40 (40)
292 COG5170 CDC55 Serine/threonine 98.0 3.9E-05 8.5E-10 65.6 8.7 117 251-370 171-309 (460)
293 KOG4190 Uncharacterized conser 97.9 6.8E-05 1.5E-09 68.9 9.5 144 223-370 749-906 (1034)
294 COG2706 3-carboxymuconate cycl 97.9 0.0017 3.7E-08 57.0 17.5 142 230-372 15-177 (346)
295 smart00320 WD40 WD40 repeats. 97.9 4.2E-05 9.1E-10 44.2 5.7 38 331-368 3-40 (40)
296 PRK04043 tolB translocation pr 97.8 0.0025 5.5E-08 59.7 19.1 174 158-359 197-386 (419)
297 PF13360 PQQ_2: PQQ-like domai 97.7 0.023 5E-07 48.7 24.8 225 38-335 1-237 (238)
298 PF15492 Nbas_N: Neuroblastoma 97.7 0.024 5.2E-07 48.5 22.0 43 297-339 228-270 (282)
299 PF15492 Nbas_N: Neuroblastoma 97.7 0.011 2.5E-07 50.4 18.8 145 223-369 57-258 (282)
300 PRK02888 nitrous-oxide reducta 97.7 0.024 5.3E-07 54.5 22.9 70 301-371 323-405 (635)
301 KOG1912 WD40 repeat protein [G 97.7 0.01 2.3E-07 57.3 20.2 194 162-369 79-303 (1062)
302 KOG2066 Vacuolar assembly/sort 97.6 0.0013 2.7E-08 63.5 13.6 130 223-370 51-187 (846)
303 PF07433 DUF1513: Protein of u 97.6 0.04 8.7E-07 48.4 22.6 61 299-362 217-278 (305)
304 KOG1275 PAB-dependent poly(A) 97.5 0.0017 3.7E-08 63.5 13.0 138 223-368 189-340 (1118)
305 PF04762 IKI3: IKI3 family; I 97.5 0.15 3.2E-06 52.7 32.8 116 251-370 303-456 (928)
306 KOG1832 HIV-1 Vpr-binding prot 97.5 0.0001 2.2E-09 71.5 4.7 52 9-60 1092-1143(1516)
307 PF11768 DUF3312: Protein of u 97.5 0.002 4.4E-08 60.2 13.0 73 251-329 258-330 (545)
308 COG4946 Uncharacterized protei 97.5 0.0043 9.3E-08 56.5 14.4 127 224-357 374-505 (668)
309 PF08553 VID27: VID27 cytoplas 97.4 0.0092 2E-07 59.3 16.9 148 160-327 492-646 (794)
310 PF13360 PQQ_2: PQQ-like domai 97.3 0.084 1.8E-06 45.2 22.6 175 169-372 43-232 (238)
311 PRK11138 outer membrane biogen 97.3 0.15 3.2E-06 47.6 31.2 134 223-368 258-392 (394)
312 KOG2114 Vacuolar assembly/sort 97.2 0.11 2.4E-06 51.1 21.1 117 223-343 139-259 (933)
313 PF08450 SGL: SMP-30/Gluconola 97.2 0.048 1E-06 47.2 17.3 139 224-370 15-164 (246)
314 KOG2041 WD40 repeat protein [G 97.2 0.0015 3.2E-08 62.3 8.0 141 223-370 28-186 (1189)
315 KOG3621 WD40 repeat-containing 97.1 0.0026 5.7E-08 60.5 9.1 114 254-370 35-154 (726)
316 PF03178 CPSF_A: CPSF A subuni 97.1 0.2 4.4E-06 45.2 22.4 133 231-370 62-202 (321)
317 KOG1275 PAB-dependent poly(A) 97.0 0.016 3.6E-07 57.0 13.1 58 223-280 280-340 (1118)
318 KOG2066 Vacuolar assembly/sort 96.9 0.038 8.3E-07 53.7 14.5 139 223-371 85-234 (846)
319 PF08553 VID27: VID27 cytoplas 96.9 0.037 8E-07 55.2 14.7 139 227-369 500-646 (794)
320 KOG2114 Vacuolar assembly/sort 96.8 0.031 6.7E-07 54.8 13.6 146 223-370 37-201 (933)
321 KOG3617 WD40 and TPR repeat-co 96.8 0.003 6.6E-08 61.4 6.7 70 301-370 62-131 (1416)
322 KOG1645 RING-finger-containing 96.8 0.0041 9E-08 55.4 6.9 76 297-373 192-269 (463)
323 KOG4640 Anaphase-promoting com 96.8 0.0072 1.6E-07 57.0 8.7 73 300-373 22-95 (665)
324 PF04762 IKI3: IKI3 family; I 96.7 0.044 9.5E-07 56.5 14.4 133 224-360 90-276 (928)
325 PRK04043 tolB translocation pr 96.7 0.29 6.2E-06 46.0 18.7 130 231-369 169-308 (419)
326 KOG2314 Translation initiation 96.6 0.024 5.1E-07 52.8 10.4 136 224-368 181-332 (698)
327 PF08450 SGL: SMP-30/Gluconola 96.5 0.49 1.1E-05 40.9 29.2 106 252-358 133-244 (246)
328 PF14783 BBS2_Mid: Ciliary BBS 96.4 0.24 5.2E-06 36.5 15.4 91 265-366 16-110 (111)
329 KOG4640 Anaphase-promoting com 96.4 0.026 5.5E-07 53.5 9.5 91 255-350 23-115 (665)
330 KOG1645 RING-finger-containing 96.4 0.0078 1.7E-07 53.7 5.9 84 9-96 184-268 (463)
331 PF07433 DUF1513: Protein of u 96.2 0.79 1.7E-05 40.5 21.5 193 162-372 18-249 (305)
332 PF06433 Me-amine-dh_H: Methyl 95.8 1.3 2.8E-05 39.7 27.0 181 171-372 117-322 (342)
333 KOG0882 Cyclophilin-related pe 95.8 0.14 3.1E-06 46.7 11.0 148 223-372 67-233 (558)
334 KOG2395 Protein involved in va 95.7 0.24 5.1E-06 46.4 12.3 138 224-366 349-496 (644)
335 KOG1008 Uncharacterized conser 95.6 0.0041 9E-08 58.7 0.9 144 224-369 73-224 (783)
336 PF12894 Apc4_WD40: Anaphase-p 95.6 0.042 9.1E-07 33.7 4.9 34 18-52 11-44 (47)
337 KOG1008 Uncharacterized conser 95.6 0.0048 1E-07 58.3 1.0 135 230-370 128-275 (783)
338 PF12894 Apc4_WD40: Anaphase-p 95.5 0.048 1E-06 33.4 5.1 30 340-369 11-40 (47)
339 PRK02888 nitrous-oxide reducta 95.4 2.8 6.1E-05 40.9 19.2 99 230-329 295-405 (635)
340 COG0823 TolB Periplasmic compo 95.4 1.2 2.5E-05 42.0 16.2 160 172-357 218-386 (425)
341 KOG2079 Vacuolar assembly/sort 95.4 0.061 1.3E-06 54.2 7.9 98 267-369 102-202 (1206)
342 KOG2444 WD40 repeat protein [G 95.3 0.06 1.3E-06 44.8 6.3 103 223-329 72-178 (238)
343 KOG1832 HIV-1 Vpr-binding prot 95.3 0.011 2.3E-07 58.1 2.3 137 223-372 1115-1257(1516)
344 KOG3621 WD40 repeat-containing 95.2 0.13 2.9E-06 49.4 9.1 107 223-329 47-155 (726)
345 KOG4649 PQQ (pyrrolo-quinoline 95.0 2 4.3E-05 36.8 24.3 84 10-97 24-126 (354)
346 PF08596 Lgl_C: Lethal giant l 94.6 3.8 8.3E-05 38.1 22.6 191 164-359 99-325 (395)
347 KOG2079 Vacuolar assembly/sort 94.6 0.16 3.5E-06 51.3 8.2 102 223-327 101-202 (1206)
348 KOG1920 IkappaB kinase complex 94.5 1.1 2.4E-05 46.2 13.8 141 224-367 83-271 (1265)
349 PF14783 BBS2_Mid: Ciliary BBS 94.5 1.4 3.1E-05 32.5 14.7 94 219-324 13-110 (111)
350 PF04053 Coatomer_WDAD: Coatom 94.4 0.99 2.1E-05 42.6 12.9 56 310-369 117-172 (443)
351 cd00216 PQQ_DH Dehydrogenases 94.4 5.1 0.00011 38.6 27.0 68 30-97 61-131 (488)
352 KOG2395 Protein involved in va 94.1 1.9 4.2E-05 40.6 13.6 147 162-328 346-500 (644)
353 KOG3617 WD40 and TPR repeat-co 94.1 0.74 1.6E-05 45.7 11.4 69 21-94 62-131 (1416)
354 PF14727 PHTB1_N: PTHB1 N-term 93.6 6.3 0.00014 36.9 18.5 148 220-369 36-203 (418)
355 KOG1916 Nuclear protein, conta 93.6 0.029 6.3E-07 55.3 1.1 138 231-371 111-266 (1283)
356 PRK11138 outer membrane biogen 93.4 6.6 0.00014 36.6 22.5 130 168-327 262-393 (394)
357 PF03178 CPSF_A: CPSF A subuni 93.3 6.1 0.00013 35.6 20.0 137 224-365 101-260 (321)
358 PF08596 Lgl_C: Lethal giant l 93.2 7.2 0.00016 36.3 16.6 146 223-369 99-289 (395)
359 COG3386 Gluconolactonase [Carb 93.0 4.4 9.6E-05 36.3 13.9 71 300-370 112-193 (307)
360 KOG1920 IkappaB kinase complex 92.9 14 0.0003 38.7 23.9 67 19-90 69-135 (1265)
361 PRK13616 lipoprotein LpqB; Pro 92.8 2.3 5E-05 41.8 12.8 108 253-366 350-472 (591)
362 COG3386 Gluconolactonase [Carb 92.7 5.5 0.00012 35.6 14.0 110 248-358 158-274 (307)
363 COG0823 TolB Periplasmic compo 92.1 2.7 5.8E-05 39.6 11.8 124 231-360 218-345 (425)
364 PF10313 DUF2415: Uncharacteri 91.9 1.1 2.3E-05 26.8 5.7 30 300-329 2-34 (43)
365 PF02897 Peptidase_S9_N: Proly 91.3 2.1 4.5E-05 40.2 10.4 69 302-372 127-212 (414)
366 PF14870 PSII_BNR: Photosynthe 91.2 6.5 0.00014 35.1 12.6 106 252-362 144-254 (302)
367 COG3391 Uncharacterized conser 91.1 7.9 0.00017 35.9 13.8 108 257-370 78-190 (381)
368 KOG4499 Ca2+-binding protein R 90.7 9.6 0.00021 32.3 12.1 93 268-360 174-275 (310)
369 PF14655 RAB3GAP2_N: Rab3 GTPa 90.4 2.6 5.6E-05 39.3 9.7 91 7-97 296-401 (415)
370 cd00216 PQQ_DH Dehydrogenases 90.3 18 0.00039 34.9 27.9 49 309-358 405-456 (488)
371 PF05694 SBP56: 56kDa selenium 89.9 17 0.00037 34.0 15.0 129 229-359 220-393 (461)
372 PF00780 CNH: CNH domain; Int 89.5 14 0.0003 32.3 17.2 139 223-370 9-165 (275)
373 KOG4460 Nuclear pore complex, 89.0 8.6 0.00019 36.5 11.7 72 301-372 106-200 (741)
374 PF10313 DUF2415: Uncharacteri 88.8 1.6 3.4E-05 26.1 4.6 31 19-49 1-34 (43)
375 PF00930 DPPIV_N: Dipeptidyl p 88.6 0.9 1.9E-05 41.7 5.5 89 273-367 22-128 (353)
376 PF07569 Hira: TUP1-like enhan 88.4 3.7 7.9E-05 34.8 8.5 65 305-370 17-95 (219)
377 PF14583 Pectate_lyase22: Olig 88.3 21 0.00045 32.9 14.0 134 233-373 216-384 (386)
378 KOG4649 PQQ (pyrrolo-quinoline 88.2 11 0.00023 32.6 10.8 59 310-369 63-122 (354)
379 COG3490 Uncharacterized protei 87.9 1.9 4.2E-05 37.4 6.4 60 305-366 120-185 (366)
380 TIGR02276 beta_rpt_yvtn 40-res 87.8 3.7 8E-05 23.9 6.1 31 308-338 1-32 (42)
381 PF10168 Nup88: Nuclear pore c 87.7 22 0.00048 36.0 14.7 73 300-373 86-182 (717)
382 TIGR02604 Piru_Ver_Nterm putat 87.0 25 0.00055 32.4 14.2 103 254-359 73-202 (367)
383 PF06977 SdiA-regulated: SdiA- 86.9 19 0.00042 31.1 21.2 183 162-364 34-244 (248)
384 PF00930 DPPIV_N: Dipeptidyl p 86.7 2 4.4E-05 39.4 6.6 50 319-370 22-71 (353)
385 PF14655 RAB3GAP2_N: Rab3 GTPa 86.5 7.5 0.00016 36.3 10.0 73 300-372 309-400 (415)
386 PF07995 GSDH: Glucose / Sorbo 86.2 24 0.00052 32.0 13.2 107 255-362 4-135 (331)
387 TIGR02604 Piru_Ver_Nterm putat 85.7 11 0.00024 34.7 11.0 58 300-359 73-142 (367)
388 PF07676 PD40: WD40-like Beta 85.2 5.2 0.00011 22.9 5.8 30 338-367 6-38 (39)
389 PF08728 CRT10: CRT10; InterP 85.0 45 0.00098 33.5 16.7 105 221-327 114-245 (717)
390 PF11715 Nup160: Nucleoporin N 84.9 7.4 0.00016 38.1 9.9 36 301-336 217-256 (547)
391 PF04841 Vps16_N: Vps16, N-ter 84.8 35 0.00076 32.1 25.1 48 41-94 62-109 (410)
392 PF08728 CRT10: CRT10; InterP 84.7 10 0.00022 37.8 10.4 106 263-369 113-245 (717)
393 PF12657 TFIIIC_delta: Transcr 83.5 9.1 0.0002 31.0 8.3 28 342-369 87-120 (173)
394 COG3391 Uncharacterized conser 82.5 42 0.0009 31.2 21.7 182 168-369 92-282 (381)
395 PF05694 SBP56: 56kDa selenium 81.3 26 0.00057 32.8 11.0 98 272-373 220-345 (461)
396 PF14870 PSII_BNR: Photosynthe 81.2 16 0.00035 32.6 9.5 67 299-367 145-212 (302)
397 PF04841 Vps16_N: Vps16, N-ter 80.7 14 0.00031 34.6 9.6 48 321-370 62-109 (410)
398 PF12234 Rav1p_C: RAVE protein 80.4 48 0.001 32.9 13.1 69 301-369 32-103 (631)
399 PF11715 Nup160: Nucleoporin N 79.9 3.3 7E-05 40.6 5.3 38 19-56 215-256 (547)
400 PF10647 Gmad1: Lipoprotein Lp 79.7 40 0.00087 29.2 13.0 107 254-367 25-141 (253)
401 PHA02713 hypothetical protein; 79.0 42 0.0009 33.0 12.5 59 309-369 463-532 (557)
402 TIGR03606 non_repeat_PQQ dehyd 78.7 62 0.0013 30.8 15.1 107 252-360 29-165 (454)
403 PF06433 Me-amine-dh_H: Methyl 78.1 26 0.00056 31.7 9.7 64 272-338 265-330 (342)
404 COG5167 VID27 Protein involved 77.3 27 0.00059 33.2 9.8 49 309-357 572-620 (776)
405 PF12234 Rav1p_C: RAVE protein 76.8 83 0.0018 31.3 16.3 93 270-368 47-154 (631)
406 KOG1900 Nuclear pore complex, 76.5 38 0.00082 36.1 11.5 140 228-371 96-273 (1311)
407 PF08801 Nucleoporin_N: Nup133 73.2 83 0.0018 29.6 13.4 30 342-371 191-220 (422)
408 PF05096 Glu_cyclase_2: Glutam 73.0 64 0.0014 28.1 11.9 106 257-369 49-156 (264)
409 TIGR03118 PEPCTERM_chp_1 conse 72.3 33 0.00072 30.4 8.6 69 301-369 25-117 (336)
410 PRK13684 Ycf48-like protein; P 72.0 78 0.0017 28.8 11.9 107 253-365 173-283 (334)
411 PHA02713 hypothetical protein; 70.2 1.2E+02 0.0025 30.0 18.8 54 275-331 481-536 (557)
412 PRK13616 lipoprotein LpqB; Pro 69.9 1.2E+02 0.0026 30.1 16.5 112 255-369 399-524 (591)
413 smart00564 PQQ beta-propeller 69.8 14 0.0003 20.0 4.1 24 312-335 8-31 (33)
414 PF03088 Str_synth: Strictosid 69.3 19 0.00042 25.5 5.6 52 315-367 32-85 (89)
415 PRK10115 protease 2; Provision 69.1 33 0.00072 34.7 9.3 70 301-372 129-209 (686)
416 KOG4460 Nuclear pore complex, 68.7 56 0.0012 31.3 9.7 80 254-333 105-203 (741)
417 PF01436 NHL: NHL repeat; Int 68.5 14 0.00031 19.5 3.7 25 301-325 4-28 (28)
418 PF10168 Nup88: Nuclear pore c 68.3 1.4E+02 0.003 30.5 13.2 76 254-330 86-181 (717)
419 PF14761 HPS3_N: Hermansky-Pud 66.5 29 0.00064 29.1 6.9 47 310-358 29-77 (215)
420 COG3204 Uncharacterized protei 66.4 36 0.00079 30.0 7.6 72 299-370 86-158 (316)
421 PF02897 Peptidase_S9_N: Proly 65.6 1.2E+02 0.0026 28.4 16.9 98 231-330 150-262 (414)
422 COG3490 Uncharacterized protei 65.6 84 0.0018 27.8 9.5 55 260-317 121-180 (366)
423 KOG1897 Damage-specific DNA bi 65.4 1.8E+02 0.0039 30.4 17.0 99 226-327 843-941 (1096)
424 KOG4441 Proteins containing BT 63.9 1.6E+02 0.0034 29.2 19.5 86 275-366 445-537 (571)
425 KOG4499 Ca2+-binding protein R 63.3 97 0.0021 26.6 10.2 70 300-370 110-188 (310)
426 PF01011 PQQ: PQQ enzyme repea 63.3 21 0.00046 20.4 4.1 26 313-338 3-28 (38)
427 PF07569 Hira: TUP1-like enhan 63.0 36 0.00078 28.8 7.1 59 223-282 24-95 (219)
428 KOG3630 Nuclear pore complex, 62.4 53 0.0011 34.6 8.9 114 254-368 102-226 (1405)
429 PF10647 Gmad1: Lipoprotein Lp 61.7 1.1E+02 0.0023 26.6 16.8 108 254-362 67-188 (253)
430 PF06977 SdiA-regulated: SdiA- 61.7 1.1E+02 0.0023 26.6 16.3 144 223-368 36-199 (248)
431 COG4590 ABC-type uncharacteriz 60.6 1E+02 0.0022 29.1 9.7 107 265-373 281-389 (733)
432 KOG4441 Proteins containing BT 59.6 1.7E+02 0.0037 28.9 12.0 127 231-364 301-440 (571)
433 PF00780 CNH: CNH domain; Int 58.8 1.2E+02 0.0026 26.3 10.9 102 263-372 6-124 (275)
434 KOG2377 Uncharacterized conser 54.6 2E+02 0.0043 27.4 11.7 102 251-354 65-167 (657)
435 PF15390 DUF4613: Domain of un 54.0 2.3E+02 0.0049 27.9 13.4 120 250-369 54-185 (671)
436 KOG1916 Nuclear protein, conta 52.1 18 0.00039 36.8 3.8 22 306-327 243-264 (1283)
437 KOG3616 Selective LIM binding 49.9 45 0.00098 33.4 6.0 33 299-331 15-47 (1636)
438 KOG3616 Selective LIM binding 49.8 33 0.00072 34.3 5.1 66 254-326 16-81 (1636)
439 KOG2377 Uncharacterized conser 49.3 2.4E+02 0.0052 26.8 11.4 70 299-370 67-140 (657)
440 PF07995 GSDH: Glucose / Sorbo 48.3 1.1E+02 0.0023 27.8 8.1 57 309-365 270-330 (331)
441 COG4590 ABC-type uncharacteriz 48.1 1.6E+02 0.0034 28.0 8.8 102 223-330 282-388 (733)
442 COG5276 Uncharacterized conser 47.2 2.1E+02 0.0045 25.5 17.9 129 223-357 98-230 (370)
443 TIGR03075 PQQ_enz_alc_DH PQQ-d 46.4 2.9E+02 0.0064 27.0 28.8 48 309-356 471-520 (527)
444 TIGR03118 PEPCTERM_chp_1 conse 45.6 2.3E+02 0.0049 25.5 11.5 79 269-350 217-307 (336)
445 KOG3522 Predicted guanine nucl 44.2 54 0.0012 33.3 5.7 131 223-365 549-693 (925)
446 PLN00033 photosystem II stabil 44.0 2.8E+02 0.006 26.0 14.0 65 299-366 281-352 (398)
447 KOG3630 Nuclear pore complex, 44.0 1.3E+02 0.0028 32.0 8.3 129 224-357 117-260 (1405)
448 KOG2247 WD40 repeat-containing 42.9 2.9 6.4E-05 39.1 -2.7 133 224-364 49-182 (615)
449 PF04053 Coatomer_WDAD: Coatom 42.9 3.1E+02 0.0066 26.2 14.4 129 229-370 124-262 (443)
450 PF07250 Glyoxal_oxid_N: Glyox 42.0 1E+02 0.0022 26.6 6.5 64 299-362 67-139 (243)
451 TIGR02608 delta_60_rpt delta-6 41.8 71 0.0015 20.3 4.2 16 343-358 3-18 (55)
452 KOG4659 Uncharacterized conser 41.5 5.2E+02 0.011 28.5 18.1 38 11-48 340-384 (1899)
453 TIGR03606 non_repeat_PQQ dehyd 41.5 1.2E+02 0.0025 29.1 7.3 53 300-352 31-90 (454)
454 PF08801 Nucleoporin_N: Nup133 39.4 3.3E+02 0.0071 25.6 14.9 31 299-329 190-220 (422)
455 PF13449 Phytase-like: Esteras 39.2 2.9E+02 0.0063 24.9 13.9 57 301-358 87-164 (326)
456 TIGR03074 PQQ_membr_DH membran 38.8 2.2E+02 0.0047 29.4 9.2 48 309-356 690-741 (764)
457 PF01731 Arylesterase: Arylest 38.6 1.4E+02 0.003 21.0 6.2 31 340-370 53-84 (86)
458 PF12341 DUF3639: Protein of u 37.6 66 0.0014 17.0 4.0 23 301-325 4-26 (27)
459 PRK10115 protease 2; Provision 37.6 4.6E+02 0.0099 26.7 13.0 109 255-369 129-254 (686)
460 PF13570 PQQ_3: PQQ-like domai 37.2 59 0.0013 18.6 3.2 20 29-48 20-39 (40)
461 PF03088 Str_synth: Strictosid 37.0 1.3E+02 0.0027 21.4 5.3 43 269-316 32-74 (89)
462 PF11635 Med16: Mediator compl 36.6 1.3E+02 0.0029 30.9 7.4 67 299-365 260-345 (753)
463 PF14269 Arylsulfotran_2: Aryl 35.0 2.3E+02 0.0049 25.3 7.9 69 301-369 146-219 (299)
464 PF13449 Phytase-like: Esteras 33.4 3.6E+02 0.0079 24.3 14.1 73 298-370 146-249 (326)
465 TIGR03075 PQQ_enz_alc_DH PQQ-d 33.2 4.7E+02 0.01 25.6 27.9 69 30-98 69-142 (527)
466 KOG1897 Damage-specific DNA bi 28.2 7.5E+02 0.016 26.3 27.1 90 273-367 806-895 (1096)
467 PF14761 HPS3_N: Hermansky-Pud 27.8 3.7E+02 0.0081 22.7 14.8 140 224-369 31-213 (215)
468 COG1770 PtrB Protease II [Amin 27.7 2.2E+02 0.0048 28.4 6.8 59 301-361 131-194 (682)
469 COG5167 VID27 Protein involved 25.6 2.2E+02 0.0048 27.5 6.2 58 223-282 575-632 (776)
470 PHA03098 kelch-like protein; P 25.3 6.3E+02 0.014 24.5 13.0 60 308-369 436-510 (534)
471 KOG1896 mRNA cleavage and poly 24.7 9.4E+02 0.02 26.3 14.8 134 231-371 1065-1214(1366)
472 PF12768 Rax2: Cortical protei 24.7 2.2E+02 0.0047 25.2 5.9 49 321-370 17-72 (281)
473 PF10214 Rrn6: RNA polymerase 24.3 5.3E+02 0.011 26.7 9.4 72 300-372 147-234 (765)
474 COG3204 Uncharacterized protei 24.0 3.1E+02 0.0067 24.5 6.4 79 15-96 82-160 (316)
475 PF10584 Proteasome_A_N: Prote 23.7 34 0.00074 17.3 0.4 8 305-312 7-14 (23)
476 PHA03098 kelch-like protein; P 23.7 5.6E+02 0.012 24.9 9.2 22 309-330 342-368 (534)
477 KOG2280 Vacuolar assembly/sort 23.5 8.1E+02 0.018 25.1 11.8 51 230-283 63-113 (829)
478 PF14157 YmzC: YmzC-like prote 22.6 2.3E+02 0.005 18.5 4.5 29 266-294 31-59 (63)
479 PF12768 Rax2: Cortical protei 22.5 5.5E+02 0.012 22.7 10.2 72 273-349 15-97 (281)
480 PF06739 SBBP: Beta-propeller 22.3 1.5E+02 0.0032 17.0 3.0 21 20-40 14-34 (38)
481 TIGR03547 muta_rot_YjhT mutatr 20.9 6.2E+02 0.013 22.8 13.3 55 307-362 255-332 (346)
482 KOG3611 Semaphorins [Signal tr 20.7 7.8E+02 0.017 25.4 9.4 68 298-366 407-489 (737)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1e-45 Score=313.76 Aligned_cols=347 Identities=18% Similarity=0.265 Sum_probs=249.3
Q ss_pred CCCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccC
Q 017296 7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (374)
Q Consensus 7 ~~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ 86 (374)
..++...+.||.++|.|++|+|+|..|+|||-|.++|+||+.+..+..+.++|.+ -|.+++++| |+.+++||+.||
T Consensus 104 vtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~--WVlcvawsP--Dgk~iASG~~dg 179 (480)
T KOG0271|consen 104 VTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKN--WVLCVAWSP--DGKKIASGSKDG 179 (480)
T ss_pred cceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCcc--EEEEEEECC--CcchhhccccCC
Confidence 3467778899999999999999999999999999999999999888889888874 588999988 789999999999
Q ss_pred eEEEEecCCCCCCCCCceeeeecceeeeeeeeecc----ccccccccCCCCcccccc--cCceeecCCCCCCCCCCC-CC
Q 017296 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKE----PYANAKQANEPKDCYERE--VGETVDTDSLCDSKDDVP-AE 159 (374)
Q Consensus 87 ~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~ 159 (374)
+|++||+.+|++...+. ..+.-++.++..... +.......+.+..+..++ .+..+. ....+...... .-
T Consensus 180 ~I~lwdpktg~~~g~~l---~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~-~lsgHT~~VTCvrw 255 (480)
T KOG0271|consen 180 SIRLWDPKTGQQIGRAL---RGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVR-TLSGHTASVTCVRW 255 (480)
T ss_pred eEEEecCCCCCcccccc---cCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEE-EeccCccceEEEEE
Confidence 99999999987653321 111111222211111 111111111111111111 111110 01111111000 01
Q ss_pred CCceEEEcccCCCeEEEEecCCCceeEEeccCcc-CCCCCcCCCCCcceeEEEeeecCC---------------------
Q 017296 160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSC-GGSPNFSSKGRGMCMAVQAYLPSK--------------------- 217 (374)
Q Consensus 160 ~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 217 (374)
++.-++++|+.|++|++|+...|.++..+..+.. .+....++. +..-..+|-+..
T Consensus 256 GG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTd---y~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~ 332 (480)
T KOG0271|consen 256 GGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTD---YVLRTGAFDHTGRKPKSFSEEQKKALERYEAVL 332 (480)
T ss_pred cCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccch---hhhhccccccccccCCChHHHHHHHHHHHHHhh
Confidence 2233678999999999999999888777765431 111111100 000000111111
Q ss_pred CCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecC
Q 017296 218 SQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLE 297 (374)
Q Consensus 218 ~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~ 297 (374)
.+....+++||+|.++.+|+.....+++..+.+|..-|+.+.|+|++.+++++|.|..|||||.++ |+.+ ..++.|
T Consensus 333 ~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~t--Gk~l--asfRGH 408 (480)
T KOG0271|consen 333 KDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRT--GKFL--ASFRGH 408 (480)
T ss_pred ccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCC--cchh--hhhhhc
Confidence 112236999999999999998777778888999999999999999999999999999999998764 4433 345567
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEec
Q 017296 298 RPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWE 368 (374)
Q Consensus 298 ~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~ 368 (374)
-..|+.++++.|.++|+|++.|.|+++||+++.+...-|.+|...|.++.|+|||+.+++|+.|..+|||.
T Consensus 409 v~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 409 VAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred cceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 77899999999999999999999999999999998889999999999999999999999999999999995
No 2
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=5.2e-42 Score=281.97 Aligned_cols=297 Identities=19% Similarity=0.279 Sum_probs=233.2
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
+..++|+||...|+++.|++|.++|+|+|.||.+.|||..+..+.+.++. +..-|+.++++|+ ++.++.||.|...
T Consensus 46 ~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl--~s~WVMtCA~sPS--g~~VAcGGLdN~C 121 (343)
T KOG0286|consen 46 RTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPL--PSSWVMTCAYSPS--GNFVACGGLDNKC 121 (343)
T ss_pred eeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEec--CceeEEEEEECCC--CCeEEecCcCcee
Confidence 45689999999999999999999999999999999999988877766543 3356999999994 6889999999999
Q ss_pred EEEecCCCCCCCCCcee-eeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEc
Q 017296 89 KCWDIENGGLSSNPSLT-IKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (374)
-|+++.+.... .... .+....|..- ..|.. +.. +. .+++
T Consensus 122 siy~ls~~d~~--g~~~v~r~l~gHtgy-----------------lScC~------------------f~d-D~--~ilT 161 (343)
T KOG0286|consen 122 SIYPLSTRDAE--GNVRVSRELAGHTGY-----------------LSCCR------------------FLD-DN--HILT 161 (343)
T ss_pred EEEeccccccc--ccceeeeeecCccce-----------------eEEEE------------------EcC-CC--ceEe
Confidence 99999753110 0000 1111111100 00000 001 11 2456
Q ss_pred ccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceee
Q 017296 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA 247 (374)
Q Consensus 168 ~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~ 247 (374)
++.|.+.-+||+++++.+..+..+ .+..+.+. +.|. ....+++|+-|++.++||+|.+ ...++
T Consensus 162 ~SGD~TCalWDie~g~~~~~f~GH----------~gDV~sls---l~p~---~~ntFvSg~cD~~aklWD~R~~-~c~qt 224 (343)
T KOG0286|consen 162 GSGDMTCALWDIETGQQTQVFHGH----------TGDVMSLS---LSPS---DGNTFVSGGCDKSAKLWDVRSG-QCVQT 224 (343)
T ss_pred cCCCceEEEEEcccceEEEEecCC----------cccEEEEe---cCCC---CCCeEEecccccceeeeeccCc-ceeEe
Confidence 777899999999999998888753 23333333 2221 2336999999999999999984 67899
Q ss_pred eecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEc
Q 017296 248 MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNY 327 (374)
Q Consensus 248 ~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~ 327 (374)
+.+|...|+++.|.|++..+++||.|+++|+||++....... .+......+|++++||..|++|.+|..|.++.+||.
T Consensus 225 F~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~--ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDt 302 (343)
T KOG0286|consen 225 FEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAV--YSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDT 302 (343)
T ss_pred ecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEee--eccCcccCCceeEEEcccccEEEeeecCCceeEeec
Confidence 999999999999999999999999999999999986543322 333333457999999999999999999999999999
Q ss_pred cCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEec
Q 017296 328 RKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWE 368 (374)
Q Consensus 328 ~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~ 368 (374)
-.++....|.+|++.|+++..+|||..|+|||+|.++|||.
T Consensus 303 lk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 303 LKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 99999999999999999999999999999999999999995
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.2e-40 Score=284.65 Aligned_cols=286 Identities=20% Similarity=0.303 Sum_probs=226.1
Q ss_pred ecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecC
Q 017296 15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE 94 (374)
Q Consensus 15 ~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~ 94 (374)
.|-+.+|..+.|+++++.|+|||.+|.++||+..+...+.++.+|.. .+.++.|.|..++..++|++.||++|+|++.
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~--~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTS--RVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEecccc--ceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 46789999999999999999999999999999999888889989874 4778888885345689999999999999997
Q ss_pred CCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeE
Q 017296 95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEV 174 (374)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 174 (374)
+-.... .+. .|...+. ...+.+. ++ ++.+++.|.+-
T Consensus 250 ~e~~l~----~l~---gH~~RVs-----------------------------------~VafHPs-G~-~L~TasfD~tW 285 (459)
T KOG0272|consen 250 QETPLQ----DLE---GHLARVS-----------------------------------RVAFHPS-GK-FLGTASFDSTW 285 (459)
T ss_pred CCcchh----hhh---cchhhhe-----------------------------------eeeecCC-Cc-eeeecccccch
Confidence 642211 110 0100000 0012222 33 45677889999
Q ss_pred EEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccC
Q 017296 175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEP 254 (374)
Q Consensus 175 ~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~ 254 (374)
++||+++++.+....+ ++. ....+ .|.++ ...+++|+-|..-++||+|+..+ +-.+.+|..+
T Consensus 286 RlWD~~tk~ElL~QEG--------Hs~--~v~~i---af~~D----GSL~~tGGlD~~~RvWDlRtgr~-im~L~gH~k~ 347 (459)
T KOG0272|consen 286 RLWDLETKSELLLQEG--------HSK--GVFSI---AFQPD----GSLAATGGLDSLGRVWDLRTGRC-IMFLAGHIKE 347 (459)
T ss_pred hhcccccchhhHhhcc--------ccc--cccee---EecCC----CceeeccCccchhheeecccCcE-EEEecccccc
Confidence 9999999875433322 211 11122 23332 23688899999999999998554 5568899999
Q ss_pred eEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECC-CCCEEEEEeCCCeEEEEEccCCeEE
Q 017296 255 VLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP-DSKIAATAGWDRRVRIYNYRKGSAL 333 (374)
Q Consensus 255 v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~v~iwd~~~~~~~ 333 (374)
|..|.|+|+|..+||||.|+++++||++.... ...+.+|..-|+.+.|+| .|++|++++.|++++||...+..++
T Consensus 348 I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~----ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ 423 (459)
T KOG0272|consen 348 ILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE----LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPL 423 (459)
T ss_pred eeeEeECCCceEEeecCCCCcEEEeeeccccc----ceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccc
Confidence 99999999999999999999999999986543 345667888899999999 6788999999999999999999999
Q ss_pred EEecccCCceEEEEEeCCCCEEEEEeCCCcEEEec
Q 017296 334 AILKYHHATCNAVSFSSDCKLMASASEDSTVALWE 368 (374)
Q Consensus 334 ~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~ 368 (374)
+++.||++.|.+++++||+.+++|+|.|.++|+|.
T Consensus 424 ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 424 KSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred hhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 99999999999999999999999999999999996
No 4
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.1e-37 Score=254.75 Aligned_cols=293 Identities=20% Similarity=0.324 Sum_probs=224.1
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcc-cceeeeeeeeeceeeeEEeccCCccccceeeeccccCe
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ-HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~ 87 (374)
.|+..+.||++.|+.+.|+|+|..|+||+.|..|.+|+... -+....+.+|.. .|+.+-+.. ++++++|+|.|++
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsg--AVM~l~~~~--d~s~i~S~gtDk~ 113 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSG--AVMELHGMR--DGSHILSCGTDKT 113 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccc--eeEeeeecc--CCCEEEEecCCce
Confidence 68888999999999999999999999999999999999542 223455667764 477777765 7789999999999
Q ss_pred EEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEc
Q 017296 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (374)
Q Consensus 88 vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (374)
|+.||+++|++... ...|...+... . +...+..++.+
T Consensus 114 v~~wD~~tG~~~rk-------~k~h~~~vNs~-----------------------------------~-p~rrg~~lv~S 150 (338)
T KOG0265|consen 114 VRGWDAETGKRIRK-------HKGHTSFVNSL-----------------------------------D-PSRRGPQLVCS 150 (338)
T ss_pred EEEEecccceeeeh-------hccccceeeec-----------------------------------C-ccccCCeEEEe
Confidence 99999999965321 11111000000 0 01112357789
Q ss_pred ccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceee
Q 017296 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA 247 (374)
Q Consensus 168 ~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~ 247 (374)
++.|++++|||+++...+.++... +-.....|. +....+++|.-|+.|++||++... .+.+
T Consensus 151 gsdD~t~kl~D~R~k~~~~t~~~k--------------yqltAv~f~----d~s~qv~sggIdn~ikvWd~r~~d-~~~~ 211 (338)
T KOG0265|consen 151 GSDDGTLKLWDIRKKEAIKTFENK--------------YQLTAVGFK----DTSDQVISGGIDNDIKVWDLRKND-GLYT 211 (338)
T ss_pred cCCCceEEEEeecccchhhccccc--------------eeEEEEEec----ccccceeeccccCceeeeccccCc-ceEE
Confidence 999999999999987655444211 001111222 223358899999999999998744 5778
Q ss_pred eecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCC--eEEEEEeeecCC--CCeEEEEECCCCCEEEEEeCCCeEE
Q 017296 248 MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTG--SCVIKKEINLER--PGISGTSIRPDSKIAATAGWDRRVR 323 (374)
Q Consensus 248 ~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~--~~~~~~~~~~~~--~~v~~~~~sp~~~~l~s~~~dg~v~ 323 (374)
+.||.++|+.+...+.+..+++-+-|+++++||++.... +++...+-..|. ......+++|++..+.+|+.|+.+.
T Consensus 212 lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vy 291 (338)
T KOG0265|consen 212 LSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVY 291 (338)
T ss_pred eecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEE
Confidence 999999999999999999999999999999999976432 333333333332 2355678999999999999999999
Q ss_pred EEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEe
Q 017296 324 IYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALW 367 (374)
Q Consensus 324 iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W 367 (374)
+||....+.++.+.+|.+.|++++|+|...+|.+++.|++|.+=
T Consensus 292 vwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 292 VWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred EeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEee
Confidence 99998888999999999999999999999999999999999873
No 5
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-36 Score=255.78 Aligned_cols=295 Identities=20% Similarity=0.306 Sum_probs=232.4
Q ss_pred CCCCCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccc
Q 017296 5 PPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (374)
Q Consensus 5 ~~~~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 84 (374)
.|++.+...+.||..+|+.+-|+|+..+++++++|++|++||..+++....+.+|... +..++++.+ +.+++++++
T Consensus 95 ipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~s--v~di~~~a~--Gk~l~tcSs 170 (406)
T KOG0295|consen 95 IPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDS--VFDISFDAS--GKYLATCSS 170 (406)
T ss_pred CCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccc--eeEEEEecC--ccEEEecCC
Confidence 3566778889999999999999999999999999999999999999998899999865 777888774 589999999
Q ss_pred cCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceE
Q 017296 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM 164 (374)
Q Consensus 85 D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (374)
|-.+++||.++-- .+++....|-..++.+ . +.+- + ..
T Consensus 171 Dl~~~LWd~~~~~------~c~ks~~gh~h~vS~V-----------------~------------------f~P~-g-d~ 207 (406)
T KOG0295|consen 171 DLSAKLWDFDTFF------RCIKSLIGHEHGVSSV-----------------F------------------FLPL-G-DH 207 (406)
T ss_pred ccchhheeHHHHH------HHHHHhcCcccceeeE-----------------E------------------EEec-C-Ce
Confidence 9999999987520 0111111110000000 0 0011 1 24
Q ss_pred EEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCc
Q 017296 165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 244 (374)
Q Consensus 165 ~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~ 244 (374)
+++++.|++|+.|++.++.++-+++.+. ..+.+. .. +.....+++++.|.+|++|-+.+ ...
T Consensus 208 ilS~srD~tik~We~~tg~cv~t~~~h~-----------ewvr~v--~v----~~DGti~As~s~dqtl~vW~~~t-~~~ 269 (406)
T KOG0295|consen 208 ILSCSRDNTIKAWECDTGYCVKTFPGHS-----------EWVRMV--RV----NQDGTIIASCSNDQTLRVWVVAT-KQC 269 (406)
T ss_pred eeecccccceeEEecccceeEEeccCch-----------HhEEEE--Ee----cCCeeEEEecCCCceEEEEEecc-chh
Confidence 6688889999999999999988887542 122111 11 23344688899999999999875 334
Q ss_pred eeeeecCccCeEEEEEecC---------------CCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCC
Q 017296 245 LTAMKVHLEPVLCLSIDES---------------CNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPD 309 (374)
Q Consensus 245 ~~~~~~h~~~v~~~~~~~~---------------~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 309 (374)
...+..|..+|.|+++-|. ++.+.++|.|++||+||+. ++.|+ .++..|..+|++++|+|.
T Consensus 270 k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~--tg~cL--~tL~ghdnwVr~~af~p~ 345 (406)
T KOG0295|consen 270 KAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVS--TGMCL--FTLVGHDNWVRGVAFSPG 345 (406)
T ss_pred hhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEecc--CCeEE--EEEecccceeeeeEEcCC
Confidence 5668889999999998222 2467889999999999995 45555 457788899999999999
Q ss_pred CCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEec
Q 017296 310 SKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWE 368 (374)
Q Consensus 310 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~ 368 (374)
|+||+|...|+++++||++..++++++..|+..|++++|+-+-.+++|||-|.++++|.
T Consensus 346 Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 346 GKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred CeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 99999999999999999999999999999999999999999888999999999999996
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=7.9e-35 Score=238.30 Aligned_cols=294 Identities=19% Similarity=0.304 Sum_probs=213.6
Q ss_pred CCCeEEeecCCCceeEEEEeCC-CCEEEEecCCCcEEEEeCcc-----cceeeeeeeeeceeeeEEeccCCccccceeee
Q 017296 8 PDPVAVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQ-----HRTVSSSWVHSAAHGIVSVATGPSIGLNKVIS 81 (374)
Q Consensus 8 ~~~~~~l~gH~~~V~~l~~~~~-~~~l~s~s~D~~v~vWd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 81 (374)
.....+|+||++.|+.++..+. ..+|++++.|.++.+|++.. |.+++.+.+|+ |.+..+..++ +++.++|
T Consensus 5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHs--H~v~dv~~s~--dg~~alS 80 (315)
T KOG0279|consen 5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHS--HFVSDVVLSS--DGNFALS 80 (315)
T ss_pred heeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccc--eEecceEEcc--CCceEEe
Confidence 3456789999999999999876 57899999999999999854 45577788876 4466666665 7799999
Q ss_pred ccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCC
Q 017296 82 QGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGP 161 (374)
Q Consensus 82 ~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (374)
++.|+++|+||+.+|+... .++.++... + +.. +.+++.
T Consensus 81 ~swD~~lrlWDl~~g~~t~--~f~GH~~dV----l------------------sva------------------~s~dn~ 118 (315)
T KOG0279|consen 81 ASWDGTLRLWDLATGESTR--RFVGHTKDV----L------------------SVA------------------FSTDNR 118 (315)
T ss_pred ccccceEEEEEecCCcEEE--EEEecCCce----E------------------EEE------------------ecCCCc
Confidence 9999999999999874211 011000000 0 000 111221
Q ss_pred ceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCC
Q 017296 162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 241 (374)
Q Consensus 162 ~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~ 241 (374)
.+++|+.|++|++|++.... ..++... .......| ..|.|... .+.+++++.|++||+||+++.
T Consensus 119 --qivSGSrDkTiklwnt~g~c-k~t~~~~--------~~~~WVsc---vrfsP~~~--~p~Ivs~s~DktvKvWnl~~~ 182 (315)
T KOG0279|consen 119 --QIVSGSRDKTIKLWNTLGVC-KYTIHED--------SHREWVSC---VRFSPNES--NPIIVSASWDKTVKVWNLRNC 182 (315)
T ss_pred --eeecCCCcceeeeeeecccE-EEEEecC--------CCcCcEEE---EEEcCCCC--CcEEEEccCCceEEEEccCCc
Confidence 46799999999999987543 3343321 10112222 34666542 236999999999999999864
Q ss_pred CCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCe
Q 017296 242 GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRR 321 (374)
Q Consensus 242 ~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~ 321 (374)
...+.+.+|+..++.++++|++..+++|+.||.+.|||++... ++.. + .+...|.+++|+|+...|+ +..+-.
T Consensus 183 -~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k--~lys--l-~a~~~v~sl~fspnrywL~-~at~~s 255 (315)
T KOG0279|consen 183 -QLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGK--NLYS--L-EAFDIVNSLCFSPNRYWLC-AATATS 255 (315)
T ss_pred -chhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCc--eeEe--c-cCCCeEeeEEecCCceeEe-eccCCc
Confidence 3456788999999999999999999999999999999997543 3322 2 2345799999999875555 555677
Q ss_pred EEEEEccCCeEEEEec----cc-----CCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 322 VRIYNYRKGSALAILK----YH-----HATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 322 v~iwd~~~~~~~~~~~----~h-----~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
|+|||+.+++.+..++ +. .-...+++|++||..|+.+=.|+.|++|.+.
T Consensus 256 IkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 256 IKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred eEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 9999999887665443 11 3356789999999999999999999999874
No 7
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.2e-34 Score=233.57 Aligned_cols=277 Identities=18% Similarity=0.286 Sum_probs=201.1
Q ss_pred CEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeecc
Q 017296 31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNS 110 (374)
Q Consensus 31 ~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~ 110 (374)
-+|+|+|.|.+||+|.+.+|+|..+++ |. ...+..++..+ +...|+.++. .-||++|++++.. .|........
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiq-h~-dsqVNrLeiTp--dk~~LAaa~~-qhvRlyD~~S~np--~Pv~t~e~h~ 83 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQ-HP-DSQVNRLEITP--DKKDLAAAGN-QHVRLYDLNSNNP--NPVATFEGHT 83 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEe-cC-ccceeeEEEcC--CcchhhhccC-CeeEEEEccCCCC--CceeEEeccC
Confidence 479999999999999999999998876 43 24577777776 5455666655 6799999998743 1222111100
Q ss_pred eeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEecc
Q 017296 111 YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQ 190 (374)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~ 190 (374)
+++..+. |..+ ++ ..++|++|+++||||++...+.+.+..
T Consensus 84 ------------------------------kNVtaVg--------F~~d-gr-WMyTgseDgt~kIWdlR~~~~qR~~~~ 123 (311)
T KOG0315|consen 84 ------------------------------KNVTAVG--------FQCD-GR-WMYTGSEDGTVKIWDLRSLSCQRNYQH 123 (311)
T ss_pred ------------------------------CceEEEE--------Eeec-Ce-EEEecCCCceEEEEeccCcccchhccC
Confidence 0111110 1111 12 467899999999999998554333322
Q ss_pred CccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEE
Q 017296 191 NSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISG 270 (374)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~ 270 (374)
+ ..... .... ++...|++|.++|.|++||+++.......+.....+|.++.+.+++..++.+
T Consensus 124 ~---------spVn~-------vvlh--pnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~ 185 (311)
T KOG0315|consen 124 N---------SPVNT-------VVLH--PNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAA 185 (311)
T ss_pred C---------CCcce-------EEec--CCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEe
Confidence 1 11111 1111 2233699999999999999987544444445556799999999999999999
Q ss_pred ecCCeEEEEEcCCCCCeEEEE--EeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCC-eEEEEecccCCceEEEE
Q 017296 271 GADQKIVLYNLDHSTGSCVIK--KEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKG-SALAILKYHHATCNAVS 347 (374)
Q Consensus 271 s~D~~i~lwd~~~~~~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~h~~~v~~v~ 347 (374)
-.-|++.+|++-..+..-.+. ..++.|...+....||||+++||+++.|++|+||+.++. +.-.++.+|...++..+
T Consensus 186 nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~ 265 (311)
T KOG0315|consen 186 NNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCA 265 (311)
T ss_pred cCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeee
Confidence 999999999986543322222 235667778999999999999999999999999999887 44457889999999999
Q ss_pred EeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 348 FSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 348 ~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
||.||+||+|||.|+++|+|++...
T Consensus 266 FS~dg~YlvTassd~~~rlW~~~~~ 290 (311)
T KOG0315|consen 266 FSADGEYLVTASSDHTARLWDLSAG 290 (311)
T ss_pred eccCccEEEecCCCCceeecccccC
Confidence 9999999999999999999998654
No 8
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=6.6e-35 Score=246.17 Aligned_cols=290 Identities=19% Similarity=0.316 Sum_probs=220.8
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
++.+++.||.+.|+||++.|-+.+++|||.|++++|||+.+|+...++.+|... +..++++. ---++.+++.|++|
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~--vr~vavS~--rHpYlFs~gedk~V 217 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIET--VRGVAVSK--RHPYLFSAGEDKQV 217 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhhe--eeeeeecc--cCceEEEecCCCee
Confidence 688999999999999999999999999999999999999999988888888644 56666665 22589999999999
Q ss_pred EEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc
Q 017296 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (374)
+.||++.++.+ +...+|...+..+. . . + ...++++|
T Consensus 218 KCwDLe~nkvI-------R~YhGHlS~V~~L~-----------------l--h----------------P--Tldvl~t~ 253 (460)
T KOG0285|consen 218 KCWDLEYNKVI-------RHYHGHLSGVYCLD-----------------L--H----------------P--TLDVLVTG 253 (460)
T ss_pred EEEechhhhhH-------HHhccccceeEEEe-----------------c--c----------------c--cceeEEec
Confidence 99999887543 22223322221111 0 0 0 01257788
Q ss_pred cCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeee
Q 017296 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~ 248 (374)
+.|.++||||+++...+..+.++... +..+ .+.+.. +.+++||-|++|++||++. +..+.++
T Consensus 254 grDst~RvWDiRtr~~V~~l~GH~~~------------V~~V-~~~~~d----pqvit~S~D~tvrlWDl~a-gkt~~tl 315 (460)
T KOG0285|consen 254 GRDSTIRVWDIRTRASVHVLSGHTNP------------VASV-MCQPTD----PQVITGSHDSTVRLWDLRA-GKTMITL 315 (460)
T ss_pred CCcceEEEeeecccceEEEecCCCCc------------ceeE-EeecCC----CceEEecCCceEEEeeecc-CceeEee
Confidence 89999999999999888887654211 0111 121111 1489999999999999987 5567788
Q ss_pred ecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcc
Q 017296 249 KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYR 328 (374)
Q Consensus 249 ~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~ 328 (374)
..|...+++++.+|+...++++|.|+ |+-|++..+. . ...+..|..-+.+++...|+ ++++|+.+|.+.+||.+
T Consensus 316 t~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~--f--~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwk 389 (460)
T KOG0285|consen 316 THHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGE--F--LQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWK 389 (460)
T ss_pred ecccceeeEEecCCchhhhhccCCcc-ceeccCCccc--h--hhccccccceeeeeeeccCc-eEEEcCCceEEEEEecC
Confidence 89999999999999999999999886 8999985432 1 12255566678888888777 77889999999999999
Q ss_pred CCeEEEEecc--------cCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 329 KGSALAILKY--------HHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 329 ~~~~~~~~~~--------h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
++..++.++. -+..|.+..|...|..|+||..|++|++|.-+
T Consensus 390 sg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 390 SGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred cCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 8865543321 23567888898899999999999999999754
No 9
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.4e-35 Score=247.47 Aligned_cols=286 Identities=22% Similarity=0.330 Sum_probs=200.6
Q ss_pred eeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCC
Q 017296 52 TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANE 131 (374)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (374)
+-..+.+|. ..|+++.|+| ++.+|+||+.|.|+|+||+.+.. |....+.+..+. +++.-.|...-++.+.
T Consensus 107 CssS~~GH~--e~Vl~~~fsp--~g~~l~tGsGD~TvR~WD~~TeT----p~~t~KgH~~WV--lcvawsPDgk~iASG~ 176 (480)
T KOG0271|consen 107 CSSSIAGHG--EAVLSVQFSP--TGSRLVTGSGDTTVRLWDLDTET----PLFTCKGHKNWV--LCVAWSPDGKKIASGS 176 (480)
T ss_pred eccccCCCC--CcEEEEEecC--CCceEEecCCCceEEeeccCCCC----cceeecCCccEE--EEEEECCCcchhhccc
Confidence 334566675 4589999998 67899999999999999998752 333444333222 2222223332222222
Q ss_pred CCc-ccccc--cCceeecCCCCCCCC-------CCC-CCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcC
Q 017296 132 PKD-CYERE--VGETVDTDSLCDSKD-------DVP-AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFS 200 (374)
Q Consensus 132 ~~~-~~~~~--~~~~~~~~~~~~~~~-------~~~-~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~ 200 (374)
... ...++ .+..+......+... ... .+..+ .+++++.|+.++|||+..++++..+..+...
T Consensus 177 ~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r-~las~skDg~vrIWd~~~~~~~~~lsgHT~~------ 249 (480)
T KOG0271|consen 177 KDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCR-RLASSSKDGSVRIWDTKLGTCVRTLSGHTAS------ 249 (480)
T ss_pred cCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCcc-ceecccCCCCEEEEEccCceEEEEeccCccc------
Confidence 211 11111 222222222222221 011 11222 5778889999999999999998888654211
Q ss_pred CCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEe-----------cCCCc---
Q 017296 201 SKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSID-----------ESCNG--- 266 (374)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~-----------~~~~~--- 266 (374)
..|+ .+ -|..++++||.|++|++|+... +.....+++|...|+.++.+ +.+..
T Consensus 250 ----VTCv----rw----GG~gliySgS~DrtIkvw~a~d-G~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~ 316 (480)
T KOG0271|consen 250 ----VTCV----RW----GGEGLIYSGSQDRTIKVWRALD-GKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKS 316 (480)
T ss_pred ----eEEE----EE----cCCceEEecCCCceEEEEEccc-hhHHHhhcccchheeeeeccchhhhhccccccccccCCC
Confidence 1111 11 1334799999999999999875 56678899999999999774 32332
Q ss_pred ----------------------eEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 017296 267 ----------------------GISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRI 324 (374)
Q Consensus 267 ----------------------~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~i 324 (374)
+++||.|.++.+|+-.... .....+..|+.-|..+.||||+++||||+.|+.|++
T Consensus 317 ~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k---kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkL 393 (480)
T KOG0271|consen 317 FSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK---KPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKL 393 (480)
T ss_pred hHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccc---cchhhhhchhhheeeEEECCCccEEEEeecccceee
Confidence 7999999999999753221 112345677788999999999999999999999999
Q ss_pred EEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 325 YNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 325 wd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
||-++|+.+.++++|-+.|..++|+.|.++|+|+|.|.|+|+|++.
T Consensus 394 W~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~ 439 (480)
T KOG0271|consen 394 WDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVR 439 (480)
T ss_pred eeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEee
Confidence 9999999999999999999999999999999999999999999874
No 10
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=3.9e-36 Score=262.59 Aligned_cols=295 Identities=17% Similarity=0.336 Sum_probs=221.3
Q ss_pred CCCCeEEeecCCCceeEEEEeC-CCCEEEEecCCCcEEEEeCcc-cceeeeeeeeeceeeeEEeccCCccccceeeeccc
Q 017296 7 PPDPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQ-HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (374)
Q Consensus 7 ~~~~~~~l~gH~~~V~~l~~~~-~~~~l~s~s~D~~v~vWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 84 (374)
|.+.+.++.||+..|+++.|.| .+.+|+|++.|+.|+|||+.. ++++.++.+|... |..++|+. .+..++|+|.
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~--Vrd~~~s~--~g~~fLS~sf 278 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKP--VRDASFNN--CGTSFLSASF 278 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhh--hhhhhccc--cCCeeeeeec
Confidence 5678999999999999999999 899999999999999999976 7789999999754 77778876 6789999999
Q ss_pred cCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceE
Q 017296 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM 164 (374)
Q Consensus 85 D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (374)
|+++|+||.++|++.. ..+... ...|.. +.++++ -+
T Consensus 279 D~~lKlwDtETG~~~~----~f~~~~---------------------~~~cvk------------------f~pd~~-n~ 314 (503)
T KOG0282|consen 279 DRFLKLWDTETGQVLS----RFHLDK---------------------VPTCVK------------------FHPDNQ-NI 314 (503)
T ss_pred ceeeeeeccccceEEE----EEecCC---------------------Cceeee------------------cCCCCC-cE
Confidence 9999999999996421 111000 001111 223332 35
Q ss_pred EEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCc
Q 017296 165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 244 (374)
Q Consensus 165 ~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~ 244 (374)
+++|+.|+.|+.||+++++.++....+. +.... ..|.+. + ..+++.++|++++||+.+.+. +
T Consensus 315 fl~G~sd~ki~~wDiRs~kvvqeYd~hL----------g~i~~---i~F~~~---g-~rFissSDdks~riWe~~~~v-~ 376 (503)
T KOG0282|consen 315 FLVGGSDKKIRQWDIRSGKVVQEYDRHL----------GAILD---ITFVDE---G-RRFISSSDDKSVRIWENRIPV-P 376 (503)
T ss_pred EEEecCCCcEEEEeccchHHHHHHHhhh----------hheee---eEEccC---C-ceEeeeccCccEEEEEcCCCc-c
Confidence 6678889999999999998766554321 01111 124332 2 368999999999999997643 2
Q ss_pred eee-eecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCC--CCeEEEEECCCCCEEEEEeCCCe
Q 017296 245 LTA-MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLER--PGISGTSIRPDSKIAATAGWDRR 321 (374)
Q Consensus 245 ~~~-~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~--~~v~~~~~sp~~~~l~s~~~dg~ 321 (374)
+.. ...+.....|+..+|.+..++.-+.|+.|.++.+...- +....+....|. ..-..+.|||||++|++|..||.
T Consensus 377 ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~-r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~ 455 (503)
T KOG0282|consen 377 IKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPF-RLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGK 455 (503)
T ss_pred chhhcchhhccCcceecCCCCCeehhhccCceEEEEeccccc-ccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCcc
Confidence 322 22244567788889999999999999999999864321 111111122222 22346889999999999999999
Q ss_pred EEEEEccCCeEEEEecccCCceEEEEEeCCCC-EEEEEeCCCcEEEec
Q 017296 322 VRIYNYRKGSALAILKYHHATCNAVSFSSDCK-LMASASEDSTVALWE 368 (374)
Q Consensus 322 v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~-~las~s~D~~v~~W~ 368 (374)
+.+||.++-+.+..+++|.+.|..+.|+|-.. .+||+|+||.|++|+
T Consensus 456 v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 456 VNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 99999999999999999999999999999665 899999999999996
No 11
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.6e-34 Score=264.04 Aligned_cols=345 Identities=17% Similarity=0.229 Sum_probs=226.7
Q ss_pred CeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEE
Q 017296 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (374)
Q Consensus 10 ~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vr 89 (374)
+++++++|.+.|++|+|++++..++++|.|..|.|||+.+-+++.+++....-..++-+.-.....+.+++++|.+|.++
T Consensus 184 cl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~ 263 (775)
T KOG0319|consen 184 CLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQ 263 (775)
T ss_pred HHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEE
Confidence 68899999999999999999999999999999999999776666555433222222222111111134899999999999
Q ss_pred EEecCCCCCCCCCcee---eeecceee-------e-----eeeee-ccccccccccCCCCc----ccccccC-c--eeec
Q 017296 90 CWDIENGGLSSNPSLT---IKTNSYHF-------C-----KLSLV-KEPYANAKQANEPKD----CYEREVG-E--TVDT 146 (374)
Q Consensus 90 vwd~~~~~~~~~~~~~---~~~~~~~~-------~-----~~~~~-~~~~~~~~~~~~~~~----~~~~~~~-~--~~~~ 146 (374)
+||..++.+....... ......+. + .+.+. ........+..+.++ +....+. . .+..
T Consensus 264 ~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVAT 343 (775)
T KOG0319|consen 264 YWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVAT 343 (775)
T ss_pred EEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEe
Confidence 9999988653211100 00000000 0 00000 000000000000000 0000000 0 0111
Q ss_pred CCC----------------CCCCCCC--CCCCCceEEEcccCCCeEEEEecCCCceeEE-eccCccCCCCCcCCCCCcce
Q 017296 147 DSL----------------CDSKDDV--PAEGPKYMAVAGEQLSEVEIWDLNTAERCTR-LHQNSCGGSPNFSSKGRGMC 207 (374)
Q Consensus 147 ~~~----------------~~~~~~~--~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 207 (374)
++. .|..... .......++++++.|+++++|.++.+..... +.+. .++......++
T Consensus 344 Ns~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~-----~gH~~svgava 418 (775)
T KOG0319|consen 344 NSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQA-----NGHTNSVGAVA 418 (775)
T ss_pred CCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhh-----cccccccceee
Confidence 110 0111111 1123346888999999999999855432211 1111 12222222222
Q ss_pred eEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCC----ce----eeeecCccCeEEEEEecCCCceEEEecCCeEEEE
Q 017296 208 MAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI----PL----TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLY 279 (374)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~----~~----~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lw 279 (374)
++ ..+...++++|+|++|++|++..... +. .+...|...|+|+++.|+...++|||.|.++++|
T Consensus 419 ~~--------~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW 490 (775)
T KOG0319|consen 419 GS--------KLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIW 490 (775)
T ss_pred ec--------ccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeee
Confidence 21 12344689999999999999975111 11 1234588999999999998999999999999999
Q ss_pred EcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEe
Q 017296 280 NLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASAS 359 (374)
Q Consensus 280 d~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s 359 (374)
+++ ...+...+..|+.++.++.|+|+.+.||+++.|+||+||.+.++++++++.||...|..+.|-.+|+.|+|++
T Consensus 491 ~le----~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~ 566 (775)
T KOG0319|consen 491 DLE----QLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAG 566 (775)
T ss_pred ccc----CceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEecc
Confidence 997 2345567788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEecCCC
Q 017296 360 EDSTVALWELYP 371 (374)
Q Consensus 360 ~D~~v~~W~~~~ 371 (374)
+||.+|+|++..
T Consensus 567 adGliKlWnikt 578 (775)
T KOG0319|consen 567 ADGLIKLWNIKT 578 (775)
T ss_pred CCCcEEEEeccc
Confidence 999999999864
No 12
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5.1e-34 Score=263.01 Aligned_cols=255 Identities=22% Similarity=0.411 Sum_probs=198.3
Q ss_pred CCCCCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccc-------------------------------ee
Q 017296 5 PPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-------------------------------TV 53 (374)
Q Consensus 5 ~~~~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~-------------------------------~~ 53 (374)
..|.-+..++..-...++|..|++++.+|+.|=.|..|++|.+...+ ..
T Consensus 365 ~lpSic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~ 444 (707)
T KOG0263|consen 365 SLPSICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTS 444 (707)
T ss_pred CCCcEEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCcee
Confidence 34445667777778899999999999999999999999999976311 11
Q ss_pred eeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCC
Q 017296 54 SSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPK 133 (374)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (374)
.++.+|. ..|+.+.|+| +.+.|+|+|+|+++|+|.+.+..+
T Consensus 445 ~~L~GH~--GPVyg~sFsP--d~rfLlScSED~svRLWsl~t~s~----------------------------------- 485 (707)
T KOG0263|consen 445 RTLYGHS--GPVYGCSFSP--DRRFLLSCSEDSSVRLWSLDTWSC----------------------------------- 485 (707)
T ss_pred EEeecCC--Cceeeeeecc--cccceeeccCCcceeeeeccccee-----------------------------------
Confidence 2233444 3366666666 445666777777777777665311
Q ss_pred cccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEee
Q 017296 134 DCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAY 213 (374)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (374)
.+.+.| +..-|||+. |
T Consensus 486 -----------------------------~V~y~G---H~~PVwdV~--------------------------------F 501 (707)
T KOG0263|consen 486 -----------------------------LVIYKG---HLAPVWDVQ--------------------------------F 501 (707)
T ss_pred -----------------------------EEEecC---CCcceeeEE--------------------------------e
Confidence 001111 123345432 2
Q ss_pred ecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEe
Q 017296 214 LPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKE 293 (374)
Q Consensus 214 ~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~ 293 (374)
.| .| .++++|+.|++-++|.... ..|+..+.+|...|.|+.|+|+..++++||.|.++|+||+..+. .+ ..
T Consensus 502 ~P---~G-yYFatas~D~tArLWs~d~-~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~--~V--Ri 572 (707)
T KOG0263|consen 502 AP---RG-YYFATASHDQTARLWSTDH-NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN--SV--RI 572 (707)
T ss_pred cC---Cc-eEEEecCCCceeeeeeccc-CCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCc--EE--EE
Confidence 11 12 2688999999999999865 56788899999999999999999999999999999999996543 32 33
Q ss_pred eecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCC
Q 017296 294 INLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 294 ~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~ 371 (374)
+.+|...|.+++|||+|++|++|+.||.|++||+..++++..+.+|++.|.++.|+.||..||+||.|++|++||+..
T Consensus 573 F~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 573 FTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred ecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 467889999999999999999999999999999999999999999999999999999999999999999999999853
No 13
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.5e-34 Score=247.42 Aligned_cols=248 Identities=21% Similarity=0.273 Sum_probs=195.6
Q ss_pred CCeEEeecCCCceeEEEEeCC--CCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccC
Q 017296 9 DPVAVLRGHRASVTDVCFHQT--KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~--~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ 86 (374)
..+.+|+||++.|.++.|+|. +.-|+|++.||++++|++.+..++..+.+|. ..|..++|.| +|+.|+|++.|.
T Consensus 208 ~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~--~RVs~VafHP--sG~~L~TasfD~ 283 (459)
T KOG0272|consen 208 NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHL--ARVSRVAFHP--SGKFLGTASFDS 283 (459)
T ss_pred ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcch--hhheeeeecC--CCceeeeccccc
Confidence 788999999999999999996 5689999999999999998878888888886 5688999988 568999999999
Q ss_pred eEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEE
Q 017296 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (374)
Q Consensus 87 ~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (374)
+-|+||+.++..... .. +|...+ .+. .+.++| -+++
T Consensus 284 tWRlWD~~tk~ElL~----QE---GHs~~v-----------------~~i------------------af~~DG--SL~~ 319 (459)
T KOG0272|consen 284 TWRLWDLETKSELLL----QE---GHSKGV-----------------FSI------------------AFQPDG--SLAA 319 (459)
T ss_pred chhhcccccchhhHh----hc---cccccc-----------------cee------------------EecCCC--ceee
Confidence 999999988632110 00 000000 000 011222 2678
Q ss_pred cccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCcee
Q 017296 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (374)
Q Consensus 167 ~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~ 246 (374)
+|+.|..-+|||++++.++-.+..+... .+ . ..|.| +...+++|+.|++++|||++.. ..+.
T Consensus 320 tGGlD~~~RvWDlRtgr~im~L~gH~k~----------I~--~-V~fsP----NGy~lATgs~Dnt~kVWDLR~r-~~ly 381 (459)
T KOG0272|consen 320 TGGLDSLGRVWDLRTGRCIMFLAGHIKE----------IL--S-VAFSP----NGYHLATGSSDNTCKVWDLRMR-SELY 381 (459)
T ss_pred ccCccchhheeecccCcEEEEecccccc----------ee--e-EeECC----CceEEeecCCCCcEEEeeeccc-ccce
Confidence 8999999999999999998888754211 11 1 12332 3347999999999999999974 4588
Q ss_pred eeecCccCeEEEEEec-CCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 017296 247 AMKVHLEPVLCLSIDE-SCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIY 325 (374)
Q Consensus 247 ~~~~h~~~v~~~~~~~-~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iw 325 (374)
++.+|.+-|..|.|+| .+..++|+|.|+++++|.-+. +...+.+..|...|.++.++||+++|++++.|+++++|
T Consensus 382 ~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~----~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW 457 (459)
T KOG0272|consen 382 TIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRT----WSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLW 457 (459)
T ss_pred ecccccchhhheEecccCCeEEEEcccCcceeeecCCC----cccchhhcCCccceEEEEeccCCceEEEeccCceeeec
Confidence 8999999999999997 677889999999999997653 23345677899999999999999999999999999999
Q ss_pred E
Q 017296 326 N 326 (374)
Q Consensus 326 d 326 (374)
.
T Consensus 458 ~ 458 (459)
T KOG0272|consen 458 R 458 (459)
T ss_pred c
Confidence 5
No 14
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=5.9e-33 Score=241.97 Aligned_cols=295 Identities=18% Similarity=0.280 Sum_probs=217.0
Q ss_pred CCCeEEeecCCCceeEEEEeCCCC-EEEEecCCCcEEEEeCccc--ce--eeeee------eee--ceeeeEEeccCCcc
Q 017296 8 PDPVAVLRGHRASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQH--RT--VSSSW------VHS--AAHGIVSVATGPSI 74 (374)
Q Consensus 8 ~~~~~~l~gH~~~V~~l~~~~~~~-~l~s~s~D~~v~vWd~~~~--~~--~~~~~------~~~--~~~~~~~~~~~~~~ 74 (374)
++..+++-.|+.+|.+.+|+|-.. +|++|+.|.+.++|++... .. ...+. ++. ....+.+++|+.
T Consensus 168 ~~~~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~-- 245 (524)
T KOG0273|consen 168 PSSKAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNN-- 245 (524)
T ss_pred cccceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecC--
Confidence 344444555999999999999776 8999999999999998641 11 00000 111 113578888887
Q ss_pred ccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCC
Q 017296 75 GLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKD 154 (374)
Q Consensus 75 ~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (374)
+++.|++|+.||.+|+|+...+.. . +...|- .|.. . +.
T Consensus 246 ~G~~LatG~~~G~~riw~~~G~l~-~-------tl~~Hk-------gPI~------------s------lK--------- 283 (524)
T KOG0273|consen 246 DGTLLATGSEDGEARIWNKDGNLI-S-------TLGQHK-------GPIF------------S------LK--------- 283 (524)
T ss_pred CCCeEEEeecCcEEEEEecCchhh-h-------hhhccC-------CceE------------E------EE---------
Confidence 678999999999999999865421 0 001110 0000 0 00
Q ss_pred CCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEE
Q 017296 155 DVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSIL 234 (374)
Q Consensus 155 ~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~ 234 (374)
-.++..++++++-|+++.+||.-+++..+.+.-+..+ + ..+. . .+...+++.+.||.|+
T Consensus 284 ---Wnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~---~---------lDVd-W-----~~~~~F~ts~td~~i~ 342 (524)
T KOG0273|consen 284 ---WNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAP---A---------LDVD-W-----QSNDEFATSSTDGCIH 342 (524)
T ss_pred ---EcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCC---c---------cceE-E-----ecCceEeecCCCceEE
Confidence 0122345667788999999999888765554322110 0 0010 0 0112588999999999
Q ss_pred EEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCC---
Q 017296 235 VWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSK--- 311 (374)
Q Consensus 235 iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~--- 311 (374)
++.+.. ..|..++++|..+|.++.++|.+..|+++|.|+++++|++..... ...+..|...|+.+.++|++.
T Consensus 343 V~kv~~-~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~----~~~l~~Hskei~t~~wsp~g~v~~ 417 (524)
T KOG0273|consen 343 VCKVGE-DRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNS----VHDLQAHSKEIYTIKWSPTGPVTS 417 (524)
T ss_pred EEEecC-CCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcc----hhhhhhhccceeeEeecCCCCccC
Confidence 999975 568899999999999999999999999999999999999754322 123456777789999988543
Q ss_pred ------EEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 312 ------IAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 312 ------~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
.+++++.|++|++||+..+.++.++..|..+|.+|+|+|+|++||||+.||.|.+|+....
T Consensus 418 n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~ 484 (524)
T KOG0273|consen 418 NPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTG 484 (524)
T ss_pred CCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccch
Confidence 6899999999999999999999999999999999999999999999999999999998654
No 15
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.4e-31 Score=243.70 Aligned_cols=338 Identities=19% Similarity=0.276 Sum_probs=229.4
Q ss_pred CCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccce--eeeeeeeeceeeeEEeccCCccccceeeecccc
Q 017296 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT--VSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (374)
Q Consensus 8 ~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D 85 (374)
-....++.||-+.|++|.|+.|.++|++||.|-+++||+....+. ...+.+|. ..|+++-|.. +...+++.+.|
T Consensus 135 Fvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHk--d~VvacfF~~--~~~~l~tvskd 210 (893)
T KOG0291|consen 135 FVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHK--DYVVACFFGA--NSLDLYTVSKD 210 (893)
T ss_pred ceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCC--cceEEEEecc--CcceEEEEecC
Confidence 356778899999999999999999999999999999999876655 33455564 4578887876 45679999999
Q ss_pred CeEEEEecCCCCCCCCC---------------ceeeeecce-------eeee-----e---eeeccccccccccCCCCc-
Q 017296 86 GTVKCWDIENGGLSSNP---------------SLTIKTNSY-------HFCK-----L---SLVKEPYANAKQANEPKD- 134 (374)
Q Consensus 86 ~~vrvwd~~~~~~~~~~---------------~~~~~~~~~-------~~~~-----~---~~~~~~~~~~~~~~~~~~- 134 (374)
|.+.+|........... ....+...+ |+++ + .+-+........+.....
T Consensus 211 G~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~ 290 (893)
T KOG0291|consen 211 GALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFG 290 (893)
T ss_pred ceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeE
Confidence 99999998732110000 000000000 0100 0 000000000111110000
Q ss_pred ccccccCceeecCCCCCCC-CCCC-CCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEe
Q 017296 135 CYEREVGETVDTDSLCDSK-DDVP-AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQA 212 (374)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (374)
.++......+...+..... ..+. ...+.++++.++.-+.+-||+..+..-+.+.+.+ .. +..+ ..
T Consensus 291 LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH--------~~--~i~~---l~ 357 (893)
T KOG0291|consen 291 LYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGH--------SD--RITS---LA 357 (893)
T ss_pred EEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecccc--------cc--ceee---EE
Confidence 0111111111111111011 1111 1224678888888889999998887655554432 11 1222 23
Q ss_pred eecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEE
Q 017296 213 YLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKK 292 (374)
Q Consensus 213 ~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~ 292 (374)
+.|+ ...+++|++||.||+||... +.++.++..|+..|+.+.|...++.+++.|.||+|+.||+....+-.
T Consensus 358 YSpD----gq~iaTG~eDgKVKvWn~~S-gfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfR---- 428 (893)
T KOG0291|consen 358 YSPD----GQLIATGAEDGKVKVWNTQS-GFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFR---- 428 (893)
T ss_pred ECCC----CcEEEeccCCCcEEEEeccC-ceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceee----
Confidence 4433 23799999999999999975 67889999999999999999999999999999999999997543211
Q ss_pred eeecCC-CCeEEEEECCCCCEEEEEeCCCe-EEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 293 EINLER-PGISGTSIRPDSKIAATAGWDRR-VRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 293 ~~~~~~-~~v~~~~~sp~~~~l~s~~~dg~-v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
.+..+. ....+++..|.|.++..|+.|.. |.+|++++|+.+..+.||+++|.++.|+|+|..|||+|+|+|||+|+++
T Consensus 429 Tft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if 508 (893)
T KOG0291|consen 429 TFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIF 508 (893)
T ss_pred eecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEee
Confidence 122221 23678889999999988888864 9999999999999999999999999999999999999999999999986
Q ss_pred C
Q 017296 371 P 371 (374)
Q Consensus 371 ~ 371 (374)
.
T Consensus 509 ~ 509 (893)
T KOG0291|consen 509 S 509 (893)
T ss_pred c
Confidence 4
No 16
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2.7e-31 Score=266.95 Aligned_cols=292 Identities=15% Similarity=0.224 Sum_probs=205.9
Q ss_pred eecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCccc----c----eeeeeeeeeceeeeEEeccCCccccceeeecccc
Q 017296 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH----R----TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (374)
Q Consensus 14 l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D 85 (374)
+.+|...|.+++|+++|++|+||+.|++|+|||.... . ++..+..+ ..+.++++.+. +.+++++++.|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~---~~v~~l~~~~~-~~~~las~~~D 554 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASR---SKLSGICWNSY-IKSQVASSNFE 554 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEeccc---CceeeEEeccC-CCCEEEEEeCC
Confidence 4459999999999999999999999999999997531 1 11122111 24566677653 35789999999
Q ss_pred CeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEE
Q 017296 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA 165 (374)
Q Consensus 86 ~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (374)
++|++||+.+++... .+..+..... .. .+.+.+ ..++
T Consensus 555 g~v~lWd~~~~~~~~----~~~~H~~~V~----------------------~l----------------~~~p~~-~~~L 591 (793)
T PLN00181 555 GVVQVWDVARSQLVT----EMKEHEKRVW----------------------SI----------------DYSSAD-PTLL 591 (793)
T ss_pred CeEEEEECCCCeEEE----EecCCCCCEE----------------------EE----------------EEcCCC-CCEE
Confidence 999999998763210 0000000000 00 011111 2256
Q ss_pred EcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCce
Q 017296 166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL 245 (374)
Q Consensus 166 ~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~ 245 (374)
++|+.|++|++||+++++.+..+... ....++ .+.+ .....+++|+.||.|++||++....++
T Consensus 592 ~Sgs~Dg~v~iWd~~~~~~~~~~~~~-----------~~v~~v---~~~~---~~g~~latgs~dg~I~iwD~~~~~~~~ 654 (793)
T PLN00181 592 ASGSDDGSVKLWSINQGVSIGTIKTK-----------ANICCV---QFPS---ESGRSLAFGSADHKVYYYDLRNPKLPL 654 (793)
T ss_pred EEEcCCCEEEEEECCCCcEEEEEecC-----------CCeEEE---EEeC---CCCCEEEEEeCCCeEEEEECCCCCccc
Confidence 77888999999999998876655321 111111 2221 122368999999999999998755566
Q ss_pred eeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCC--eEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEE
Q 017296 246 TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTG--SCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVR 323 (374)
Q Consensus 246 ~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~--~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~ 323 (374)
..+.+|...|.++.|. ++..+++++.|++|++||+..... .......+..|...+..++|+|++++|++|+.|++|+
T Consensus 655 ~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~ 733 (793)
T PLN00181 655 CTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVF 733 (793)
T ss_pred eEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEE
Confidence 7788999999999996 456789999999999999864211 0111234556667788999999999999999999999
Q ss_pred EEEccCCeEEEE-------------ecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 324 IYNYRKGSALAI-------------LKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 324 iwd~~~~~~~~~-------------~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
+|+...+..+.. ...|...|.+++|+|++..|++|+.||+|++|++.
T Consensus 734 iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~~ 793 (793)
T PLN00181 734 VYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEMV 793 (793)
T ss_pred EEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEecC
Confidence 999865543321 13355679999999999999999999999999873
No 17
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.4e-31 Score=233.88 Aligned_cols=352 Identities=19% Similarity=0.266 Sum_probs=229.5
Q ss_pred CCCCCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeee---eeeceeeeEEeccCCccccceeee
Q 017296 5 PPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW---VHSAAHGIVSVATGPSIGLNKVIS 81 (374)
Q Consensus 5 ~~~~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~s 81 (374)
.||-+...+++.|..-|+|++|+|||.+++|+|.||++.++|-.+|+.+..+. .|. ..+.+++|+| |+.+++|
T Consensus 177 GPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHk--GsIfalsWsP--Ds~~~~T 252 (603)
T KOG0318|consen 177 GPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHK--GSIFALSWSP--DSTQFLT 252 (603)
T ss_pred CCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCcc--ccEEEEEECC--CCceEEE
Confidence 46667888899999999999999999999999999999999999999887766 443 4588888887 7899999
Q ss_pred ccccCeEEEEecCCCCCCCCCceeeeeccee-eeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCC----CC
Q 017296 82 QGRDGTVKCWDIENGGLSSNPSLTIKTNSYH-FCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKD----DV 156 (374)
Q Consensus 82 ~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 156 (374)
+|.|+++|+||+.++++...-....+..... .|.. ++ .........+....+..+... +......+... ..
T Consensus 253 ~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lW--qk-d~lItVSl~G~in~ln~~d~~-~~~~i~GHnK~ITaLtv 328 (603)
T KOG0318|consen 253 VSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLW--QK-DHLITVSLSGTINYLNPSDPS-VLKVISGHNKSITALTV 328 (603)
T ss_pred ecCCceEEEEEeeccceEEEeecCCchhceEEEEEE--eC-CeEEEEEcCcEEEEecccCCC-hhheecccccceeEEEE
Confidence 9999999999999886532100000000000 0100 00 000000000000000000000 00000111111 11
Q ss_pred CCCCCceEEEcccCCCeEEEEecCCCceeEEec-----------c----------------------CccCCCC--CcCC
Q 017296 157 PAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLH-----------Q----------------------NSCGGSP--NFSS 201 (374)
Q Consensus 157 ~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~-----------~----------------------~~~~~~~--~~~~ 201 (374)
.+++ + .+++|+.|+.|.-||..++.+..... . ....... ....
T Consensus 329 ~~d~-~-~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~ 406 (603)
T KOG0318|consen 329 SPDG-K-TIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGS 406 (603)
T ss_pred cCCC-C-EEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCC
Confidence 1233 3 46789999999999988765432110 0 0000000 0000
Q ss_pred CCCcce------eEEE--------------------eeec---CCCCCceEEEEEecCCcEEEEeccCCC-CceeeeecC
Q 017296 202 KGRGMC------MAVQ--------------------AYLP---SKSQGFVNVLAGYEDGSILVWDIRNPG-IPLTAMKVH 251 (374)
Q Consensus 202 ~~~~~~------~~~~--------------------~~~~---~~~~~~~~~~~gs~dg~i~iwdl~~~~-~~~~~~~~h 251 (374)
+...++ .++. .|.+ ..++....++.|.+||.|++|.+.... .....+..|
T Consensus 407 QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h 486 (603)
T KOG0318|consen 407 QPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEH 486 (603)
T ss_pred CceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecc
Confidence 000000 0000 0000 001223358889999999999996533 233356679
Q ss_pred ccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCC-
Q 017296 252 LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKG- 330 (374)
Q Consensus 252 ~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~- 330 (374)
..+|++++++|++.+|+++...+.+.+||+..... ....+..|...|.+++|+|+.+++|+|+.|-.|.||+++.+
T Consensus 487 ~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~---~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~ 563 (603)
T KOG0318|consen 487 RAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV---KTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPA 563 (603)
T ss_pred cCCceEEEECCCCcEEEEeccCCcEEEEEcccCce---ecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChh
Confidence 99999999999999999999999999999975432 33456678889999999999999999999999999999765
Q ss_pred eEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 331 SALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 331 ~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
+.+....+|...|+.|+|- |...|+|+++|..||+|++.
T Consensus 564 ~~i~iknAH~~gVn~v~wl-de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 564 KHIIIKNAHLGGVNSVAWL-DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred hheEeccccccCceeEEEe-cCceEEeccCcceeEEeccc
Confidence 3355556899889999995 56789999999999999985
No 18
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.1e-30 Score=228.71 Aligned_cols=288 Identities=23% Similarity=0.417 Sum_probs=214.3
Q ss_pred eEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEE
Q 017296 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC 90 (374)
Q Consensus 11 ~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrv 90 (374)
+.++++|.++|++++|+|++++|++++.|+.+++||..+++....+..|.. .+..+.+.+ +++.+++++.|+.|++
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~--~i~~~~~~~--~~~~l~~~~~~~~i~i 77 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTG--PVRDVAASA--DGTYLASGSSDKTIRL 77 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCc--ceeEEEECC--CCCEEEEEcCCCeEEE
Confidence 467889999999999999999999999999999999988776666655543 355677776 4478999999999999
Q ss_pred EecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccC
Q 017296 91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ 170 (374)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (374)
||+.+++... .......... +.. +.+ + ..++++++.
T Consensus 78 ~~~~~~~~~~----~~~~~~~~i~--------------------~~~------------------~~~-~-~~~~~~~~~ 113 (289)
T cd00200 78 WDLETGECVR----TLTGHTSYVS--------------------SVA------------------FSP-D-GRILSSSSR 113 (289)
T ss_pred EEcCcccceE----EEeccCCcEE--------------------EEE------------------EcC-C-CCEEEEecC
Confidence 9998753210 1100000000 000 001 1 124555666
Q ss_pred CCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeec
Q 017296 171 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV 250 (374)
Q Consensus 171 d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~ 250 (374)
++.+++||+++++....+..+ .....++ .+.+. ...+++++.||.|++||++. ......+..
T Consensus 114 ~~~i~~~~~~~~~~~~~~~~~----------~~~i~~~---~~~~~----~~~l~~~~~~~~i~i~d~~~-~~~~~~~~~ 175 (289)
T cd00200 114 DKTIKVWDVETGKCLTTLRGH----------TDWVNSV---AFSPD----GTFVASSSQDGTIKLWDLRT-GKCVATLTG 175 (289)
T ss_pred CCeEEEEECCCcEEEEEeccC----------CCcEEEE---EEcCc----CCEEEEEcCCCcEEEEEccc-cccceeEec
Confidence 899999999987766555421 0111111 23222 22466667799999999975 345666778
Q ss_pred CccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCC
Q 017296 251 HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKG 330 (374)
Q Consensus 251 h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~ 330 (374)
|..++.++.+++++..+++++.|+.+++||++... . ...+..+...+.+++|+|++.++++++.|+.|++||+.++
T Consensus 176 ~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~--~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~ 251 (289)
T cd00200 176 HTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGK--C--LGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG 251 (289)
T ss_pred CccccceEEECCCcCEEEEecCCCcEEEEECCCCc--e--ecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc
Confidence 88899999999998889999999999999996432 1 2223345567999999999989998888999999999988
Q ss_pred eEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEec
Q 017296 331 SALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWE 368 (374)
Q Consensus 331 ~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~ 368 (374)
+....+..|...|.+++|+|++++|++++.|+.|++|+
T Consensus 252 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 252 ECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred eeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 98888999999999999999999999999999999996
No 19
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-32 Score=222.99 Aligned_cols=287 Identities=22% Similarity=0.293 Sum_probs=200.0
Q ss_pred EEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEE
Q 017296 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (374)
Q Consensus 12 ~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvw 91 (374)
..|.||+.+++.|.|+.+|.+|+|++.|.++.||-...|+.+.++.+|... |-++..+. +..++++|+.|.++|+|
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGa--vW~~Did~--~s~~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGA--VWCCDIDW--DSKHLITGSADQTAKLW 79 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCce--EEEEEecC--CcceeeeccccceeEEE
Confidence 478999999999999999999999999999999999999999999999754 55555443 55799999999999999
Q ss_pred ecCCCCCCCCCceeeeecc-eeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc--
Q 017296 92 DIENGGLSSNPSLTIKTNS-YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG-- 168 (374)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 168 (374)
|+++|++... .+... ...+ + +.. +..+++++.
T Consensus 80 Dv~tGk~la~----~k~~~~Vk~~----------------------~------------------F~~-~gn~~l~~tD~ 114 (327)
T KOG0643|consen 80 DVETGKQLAT----WKTNSPVKRV----------------------D------------------FSF-GGNLILASTDK 114 (327)
T ss_pred EcCCCcEEEE----eecCCeeEEE----------------------e------------------ecc-CCcEEEEEehh
Confidence 9999965321 11100 0000 0 000 111111111
Q ss_pred --cCCCeEEEEecCCC-------ceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEecc
Q 017296 169 --EQLSEVEIWDLNTA-------ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239 (374)
Q Consensus 169 --~~d~~i~vWd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~ 239 (374)
+..+.|.++|++.. ++...++.+. . . ... ..+.. ....+++|.+||.|.+||++
T Consensus 115 ~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~--------s--k-it~---a~Wg~---l~~~ii~Ghe~G~is~~da~ 177 (327)
T KOG0643|consen 115 QMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD--------S--K-ITS---ALWGP---LGETIIAGHEDGSISIYDAR 177 (327)
T ss_pred hcCcceEEEEEEccCChhhhcccCceEEecCCc--------c--c-eee---eeecc---cCCEEEEecCCCcEEEEEcc
Confidence 12346888888732 2333333211 0 0 001 11111 11258999999999999999
Q ss_pred CCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCC
Q 017296 240 NPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWD 319 (374)
Q Consensus 240 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d 319 (374)
+....+..-+.|...|+.+.+.++...++++|.|.+.++||+..-+ ..+..... ..+.+++++|.-..++.||..
T Consensus 178 ~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~----v~Kty~te-~PvN~aaisP~~d~VilgGGq 252 (327)
T KOG0643|consen 178 TGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLE----VLKTYTTE-RPVNTAAISPLLDHVILGGGQ 252 (327)
T ss_pred cCceeeechhhhccccccccccCCcceEEecccCccceeeecccee----eEEEeeec-ccccceecccccceEEecCCc
Confidence 7655566667899999999999999999999999999999986432 22233322 358999999976666665543
Q ss_pred Ce--EEEEEccCC------------eEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 320 RR--VRIYNYRKG------------SALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 320 g~--v~iwd~~~~------------~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
.- |--=..+.| +.+...++|.++|++|||+|+|+..+||++||.||+--+
T Consensus 253 eA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~F 316 (327)
T KOG0643|consen 253 EAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHF 316 (327)
T ss_pred eeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEe
Confidence 22 221111222 335678999999999999999999999999999999644
No 20
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.3e-33 Score=237.72 Aligned_cols=232 Identities=21% Similarity=0.426 Sum_probs=185.5
Q ss_pred CCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCC
Q 017296 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG 96 (374)
Q Consensus 17 H~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~ 96 (374)
-.++|+|+.+ |+..++||..|.+|+|||.++-.++..+.+|.. .+.|+-++ .+.++||++|.|||+||+++|
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtG--SVLCLqyd----~rviisGSSDsTvrvWDv~tg 267 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTG--SVLCLQYD----ERVIVSGSSDSTVRVWDVNTG 267 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCC--cEEeeecc----ceEEEecCCCceEEEEeccCC
Confidence 4688999999 677899999999999999998888889989874 36677664 368999999999999999998
Q ss_pred CCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEE
Q 017296 97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEI 176 (374)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v 176 (374)
+... + .+|+|.. .+.
T Consensus 268 e~l~-------t-lihHcea--------------------------------------------------------VLh- 282 (499)
T KOG0281|consen 268 EPLN-------T-LIHHCEA--------------------------------------------------------VLH- 282 (499)
T ss_pred chhh-------H-Hhhhcce--------------------------------------------------------eEE-
Confidence 5321 1 1111100 000
Q ss_pred EecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCC--CceeeeecCccC
Q 017296 177 WDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG--IPLTAMKVHLEP 254 (374)
Q Consensus 177 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~--~~~~~~~~h~~~ 254 (374)
+ .|. .+ .+++.|.|.+|++||+..+. ..+..+.||...
T Consensus 283 -----------l-----------------------rf~----ng--~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAa 322 (499)
T KOG0281|consen 283 -----------L-----------------------RFS----NG--YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA 322 (499)
T ss_pred -----------E-----------------------EEe----CC--EEEEecCCceeEEEeccCchHHHHHHHHhhhhhh
Confidence 0 010 11 47889999999999997653 234457799999
Q ss_pred eEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEE
Q 017296 255 VLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALA 334 (374)
Q Consensus 255 v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~ 334 (374)
|+.+.|+.+ +++++|.|.+|++|++.+ +.+...+++|+.+|.++.+. +++++||+.|.+|++||...|.++.
T Consensus 323 VNvVdfd~k--yIVsASgDRTikvW~~st----~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLR 394 (499)
T KOG0281|consen 323 VNVVDFDDK--YIVSASGDRTIKVWSTST----CEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLR 394 (499)
T ss_pred eeeeccccc--eEEEecCCceEEEEeccc----eeeehhhhcccccceehhcc--CeEEEecCCCceEEEEeccccHHHH
Confidence 999999865 689999999999999853 34456677888888877665 8899999999999999999999999
Q ss_pred EecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCC
Q 017296 335 ILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 335 ~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~ 371 (374)
.++||++-|.++.| |.+.++||+-||+||+||+..
T Consensus 395 vLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~a 429 (499)
T KOG0281|consen 395 VLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQA 429 (499)
T ss_pred HHhchHHhhhheee--cCceeeeccccceEEEEeccc
Confidence 99999999999999 778999999999999999854
No 21
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=8.5e-33 Score=237.03 Aligned_cols=286 Identities=17% Similarity=0.289 Sum_probs=211.8
Q ss_pred CCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCC
Q 017296 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG 97 (374)
Q Consensus 18 ~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~ 97 (374)
+-+|..|+|.|+|+.|++|+..|.+.+|+..+--.-..++.|. ..|.++.++. ++.+++||..||+||+|+..-+.
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHD--s~Vr~m~ws~--~g~wmiSgD~gG~iKyWqpnmnn 171 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHD--SPVRTMKWSH--NGTWMISGDKGGMIKYWQPNMNN 171 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhc--ccceeEEEcc--CCCEEEEcCCCceEEecccchhh
Confidence 4589999999999999999999999999974322222344565 3477788877 56899999999999999986431
Q ss_pred CCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEE
Q 017296 98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIW 177 (374)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vW 177 (374)
++....|.. +...+. .+.+.+. .++++++|++|+||
T Consensus 172 --------Vk~~~ahh~----------------eaIRdl------------------afSpnDs--kF~t~SdDg~ikiW 207 (464)
T KOG0284|consen 172 --------VKIIQAHHA----------------EAIRDL------------------AFSPNDS--KFLTCSDDGTIKIW 207 (464)
T ss_pred --------hHHhhHhhh----------------hhhhee------------------ccCCCCc--eeEEecCCCeEEEE
Confidence 111111100 000000 0112222 35678899999999
Q ss_pred ecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEE
Q 017296 178 DLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLC 257 (374)
Q Consensus 178 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~ 257 (374)
|....+....+..+.. ..+ + + ...| ...++++|+.|+.|++||.++ +.++.++.+|...|..
T Consensus 208 df~~~kee~vL~GHgw--------dVk--s--v-dWHP----~kgLiasgskDnlVKlWDprS-g~cl~tlh~HKntVl~ 269 (464)
T KOG0284|consen 208 DFRMPKEERVLRGHGW--------DVK--S--V-DWHP----TKGLIASGSKDNLVKLWDPRS-GSCLATLHGHKNTVLA 269 (464)
T ss_pred eccCCchhheeccCCC--------Ccc--e--e-ccCC----ccceeEEccCCceeEeecCCC-cchhhhhhhccceEEE
Confidence 9887665455543311 111 0 0 1222 233699999999999999997 5567888999999999
Q ss_pred EEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECC-CCCEEEEEeCCCeEEEEEccCCeEEEEe
Q 017296 258 LSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP-DSKIAATAGWDRRVRIYNYRKGSALAIL 336 (374)
Q Consensus 258 ~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 336 (374)
+.|.+.++.|+++|.|..++++|++..... ...+.|...+.+++++| ...++.+||+||.|..|.+...+++..+
T Consensus 270 ~~f~~n~N~Llt~skD~~~kv~DiR~mkEl----~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i 345 (464)
T KOG0284|consen 270 VKFNPNGNWLLTGSKDQSCKVFDIRTMKEL----FTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEI 345 (464)
T ss_pred EEEcCCCCeeEEccCCceEEEEehhHhHHH----HHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCC
Confidence 999999999999999999999999733221 23456778899999999 5778999999999999999755665544
Q ss_pred -cccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCCC
Q 017296 337 -KYHHATCNAVSFSSDCKLMASASEDSTVALWELYPPH 373 (374)
Q Consensus 337 -~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~~ 373 (374)
.+|...|++++|+|=|.+|+|||.|.++|+|.-.+|.
T Consensus 346 ~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp~ 383 (464)
T KOG0284|consen 346 PPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRPG 383 (464)
T ss_pred CcccccceeeeeccccceeEeecCCCcceeeeccCCCC
Confidence 4799999999999999999999999999999876653
No 22
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.4e-31 Score=210.95 Aligned_cols=287 Identities=16% Similarity=0.283 Sum_probs=207.4
Q ss_pred CCCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccC
Q 017296 7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (374)
Q Consensus 7 ~~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ 86 (374)
|.+....|.+|+++|+++.|+.+|++.+|++.|.+|++||...|.++++..+|... +.-.+.+. |...++++|.|+
T Consensus 6 ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~E--VlD~~~s~--Dnskf~s~GgDk 81 (307)
T KOG0316|consen 6 PTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHE--VLDAALSS--DNSKFASCGGDK 81 (307)
T ss_pred cchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCce--eeeccccc--cccccccCCCCc
Confidence 33577889999999999999999999999999999999999999999999888644 65555544 557899999999
Q ss_pred eEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEE
Q 017296 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (374)
Q Consensus 87 ~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (374)
.+.+||+.+|++.+. ...|...+ +...++ ...-+++
T Consensus 82 ~v~vwDV~TGkv~Rr-------~rgH~aqV--------NtV~fN-----------------------------eesSVv~ 117 (307)
T KOG0316|consen 82 AVQVWDVNTGKVDRR-------FRGHLAQV--------NTVRFN-----------------------------EESSVVA 117 (307)
T ss_pred eEEEEEcccCeeeee-------ccccccee--------eEEEec-----------------------------CcceEEE
Confidence 999999999975431 11111100 001111 0112578
Q ss_pred cccCCCeEEEEecCCCc--eeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCc
Q 017296 167 AGEQLSEVEIWDLNTAE--RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 244 (374)
Q Consensus 167 ~~~~d~~i~vWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~ 244 (374)
+|+-|.++++||-++.. +++.+.. .....+.+.+ ....+++||.||++|.||+|....
T Consensus 118 SgsfD~s~r~wDCRS~s~ePiQilde----------a~D~V~Si~v---------~~heIvaGS~DGtvRtydiR~G~l- 177 (307)
T KOG0316|consen 118 SGSFDSSVRLWDCRSRSFEPIQILDE----------AKDGVSSIDV---------AEHEIVAGSVDGTVRTYDIRKGTL- 177 (307)
T ss_pred eccccceeEEEEcccCCCCccchhhh----------hcCceeEEEe---------cccEEEeeccCCcEEEEEeeccee-
Confidence 89999999999988753 3333321 1111222211 112589999999999999997421
Q ss_pred eeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCC--eEEEEECCCCCEEEEEeCCCeE
Q 017296 245 LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPG--ISGTSIRPDSKIAATAGWDRRV 322 (374)
Q Consensus 245 ~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~--v~~~~~sp~~~~l~s~~~dg~v 322 (374)
.......||+|++|+++++..+.++.|++++|-|-++ ++.+ ...+.|... -...+|+.....+++|++||.|
T Consensus 178 --~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~t--GklL--~sYkGhkn~eykldc~l~qsdthV~sgSEDG~V 251 (307)
T KOG0316|consen 178 --SSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKET--GKLL--KSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKV 251 (307)
T ss_pred --ehhhcCCcceeEEecCCCCEEEEeeccceeeecccch--hHHH--HHhcccccceeeeeeeecccceeEEeccCCceE
Confidence 2234678999999999999999999999999987653 3221 222233221 2345677777889999999999
Q ss_pred EEEEccCCeEEEEecccCCc-eEEEEEeCCCCEEEEEeCCCcEEEec
Q 017296 323 RIYNYRKGSALAILKYHHAT-CNAVSFSSDCKLMASASEDSTVALWE 368 (374)
Q Consensus 323 ~iwd~~~~~~~~~~~~h~~~-v~~v~~sp~~~~las~s~D~~v~~W~ 368 (374)
.+||+.+...+..+..|... |.+++++|.-..++++. ++.+.+|-
T Consensus 252 y~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~~ 297 (307)
T KOG0316|consen 252 YFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITAT-GHGDLFWY 297 (307)
T ss_pred EEEEeccceeeeeeccCCceeEEeeecccCccceeEec-CCceecee
Confidence 99999999999889877776 88999999877666655 45566663
No 23
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=100.00 E-value=3.9e-32 Score=220.86 Aligned_cols=313 Identities=41% Similarity=0.701 Sum_probs=217.7
Q ss_pred CCCCCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccc
Q 017296 5 PPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (374)
Q Consensus 5 ~~~~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 84 (374)
|.||.|..+|++|.+.|+++.|-.++. |++|..-|.|++|++.+.+.+..+.++.. ..+..+-.-+ +..+.+-+.
T Consensus 1 ~~pPdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~-~~it~lq~~p---~d~l~tqgR 75 (323)
T KOG0322|consen 1 MVPPDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGR-LFITNLQSIP---NDSLDTQGR 75 (323)
T ss_pred CCCCCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhcc-ceeeceeecC---CcchhhcCC
Confidence 578899999999999999999976554 99999999999999988776555442211 1122222222 257889999
Q ss_pred cCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCC-CcccccccCceeecCCCCCCCCCCCCCCCce
Q 017296 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEP-KDCYEREVGETVDTDSLCDSKDDVPAEGPKY 163 (374)
Q Consensus 85 D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (374)
|..+.+|++..+..... ..+..++.++|..++.+.+.........+ ..+..... . +. +..
T Consensus 76 d~~L~lw~ia~s~~i~i--~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~------------~-D~---g~~- 136 (323)
T KOG0322|consen 76 DPLLILWTIAYSAFISI--HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHK------------Q-DG---GDT- 136 (323)
T ss_pred CceEEEEEccCcceEEE--eeeeccccccccceeccCCCcchhheecCCcccchhhh------------h-cc---Ccc-
Confidence 99999999987643211 12334566777777665443320000000 00111000 0 00 000
Q ss_pred EEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCC
Q 017296 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243 (374)
Q Consensus 164 ~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~ 243 (374)
-.+++=|-+. ..++....+.. ..+. | .....+++|+++|.+.+||+.....
T Consensus 137 --------tqv~i~dd~~---~~Klgsvmc~~-~~~~------c-----------~s~~lllaGyEsghvv~wd~S~~~~ 187 (323)
T KOG0322|consen 137 --------TQVQIADDSE---RSKLGSVMCQD-KDHA------C-----------GSTFLLLAGYESGHVVIWDLSTGDK 187 (323)
T ss_pred --------ceeEccCchh---ccccCceeeee-cccc------c-----------cceEEEEEeccCCeEEEEEccCCce
Confidence 0122211110 00111001100 0000 0 0012477899999999999976422
Q ss_pred c---------eeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEE
Q 017296 244 P---------LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAA 314 (374)
Q Consensus 244 ~---------~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 314 (374)
. ......|..+|.++.+++.....++|+.+..+..|+++.+++.+....++.....++..+.+.||++++|
T Consensus 188 ~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlA 267 (323)
T KOG0322|consen 188 IIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILA 267 (323)
T ss_pred eeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEe
Confidence 1 2234568999999999988778899999999999999988888888888888889999999999999999
Q ss_pred EEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 315 TAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 315 s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
++|||++||||..++.+++..++.|.+.|++++|+|+..++|.+|.|++|.+|+++
T Consensus 268 TAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkLY 323 (323)
T KOG0322|consen 268 TAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKLY 323 (323)
T ss_pred ecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeecC
Confidence 99999999999999999999999999999999999999999999999999999975
No 24
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=3.6e-31 Score=214.98 Aligned_cols=287 Identities=18% Similarity=0.258 Sum_probs=212.9
Q ss_pred EEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeee--eeeceeeeEEeccCCccccceeeeccccCeEE
Q 017296 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW--VHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (374)
Q Consensus 12 ~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vr 89 (374)
+.+++|.+.|.+|+|+.+|..|++|+.|++++||+++.++...... +|. ..+..+++.+. ..+.+++++.|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~--~svdql~w~~~-~~d~~atas~dk~ir 90 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHT--DSVDQLCWDPK-HPDLFATASGDKTIR 90 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCC--cchhhheeCCC-CCcceEEecCCceEE
Confidence 5678999999999999999999999999999999998776544332 343 34667777764 457899999999999
Q ss_pred EEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEccc
Q 017296 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE 169 (374)
Q Consensus 90 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (374)
+||++.+++.. .+.....++ .+ ...+.+.+ +++++
T Consensus 91 ~wd~r~~k~~~----~i~~~~eni-----------------------------~i-----------~wsp~g~~-~~~~~ 125 (313)
T KOG1407|consen 91 IWDIRSGKCTA----RIETKGENI-----------------------------NI-----------TWSPDGEY-IAVGN 125 (313)
T ss_pred EEEeccCcEEE----EeeccCcce-----------------------------EE-----------EEcCCCCE-EEEec
Confidence 99999875421 111100000 00 00122234 45566
Q ss_pred CCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeee
Q 017296 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK 249 (374)
Q Consensus 170 ~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~ 249 (374)
.|..|.+.|.++.+.....++....... .+. . .+ ..++.....|.|.|-.... -+++++++
T Consensus 126 kdD~it~id~r~~~~~~~~~~~~e~ne~--------------~w~-~--~n-d~Fflt~GlG~v~ILsyps-Lkpv~si~ 186 (313)
T KOG1407|consen 126 KDDRITFIDARTYKIVNEEQFKFEVNEI--------------SWN-N--SN-DLFFLTNGLGCVEILSYPS-LKPVQSIK 186 (313)
T ss_pred CcccEEEEEecccceeehhcccceeeee--------------eec-C--CC-CEEEEecCCceEEEEeccc-cccccccc
Confidence 6778999999987765554433211110 011 1 11 1456666789999988764 46789999
Q ss_pred cCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccC
Q 017296 250 VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRK 329 (374)
Q Consensus 250 ~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~ 329 (374)
.|.....|+.|+|+++++|+||.|..+.|||++.-- |. ..+.....+|+.++||.||++||||++|..|-|=++++
T Consensus 187 AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELi--C~--R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vet 262 (313)
T KOG1407|consen 187 AHPSNCICIEFDPDGRYFATGSADALVSLWDVDELI--CE--RCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVET 262 (313)
T ss_pred cCCcceEEEEECCCCceEeeccccceeeccChhHhh--hh--eeeccccCceEEEEeccCcceeeccCccceEEeEeccc
Confidence 999999999999999999999999999999986432 21 22334557899999999999999999999999999999
Q ss_pred CeEEEEecccCCceEEEEEeCCCCEEEEEeCC---------CcEEEecCC
Q 017296 330 GSALAILKYHHATCNAVSFSSDCKLMASASED---------STVALWELY 370 (374)
Q Consensus 330 ~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D---------~~v~~W~~~ 370 (374)
|..+..++ +.++-.+|||+|...+||.+..| |+||++-+.
T Consensus 263 Gd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 263 GDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred CCeEEEee-ccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence 99998886 78899999999999999988755 678887653
No 25
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.8e-30 Score=238.01 Aligned_cols=183 Identities=20% Similarity=0.381 Sum_probs=147.7
Q ss_pred CCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeee
Q 017296 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK 249 (374)
Q Consensus 170 ~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~ 249 (374)
..+.+++|+..+.++++++... ..++. .|.| +..++++|...|.+.+||+.+. ..+.+.+
T Consensus 392 a~~SikiWn~~t~kciRTi~~~------------y~l~~---~Fvp----gd~~Iv~G~k~Gel~vfdlaS~-~l~Eti~ 451 (888)
T KOG0306|consen 392 AGESIKIWNRDTLKCIRTITCG------------YILAS---KFVP----GDRYIVLGTKNGELQVFDLASA-SLVETIR 451 (888)
T ss_pred CCCcEEEEEccCcceeEEeccc------------cEEEE---EecC----CCceEEEeccCCceEEEEeehh-hhhhhhh
Confidence 3468999999999999988531 12221 2443 3346999999999999999863 3456677
Q ss_pred cCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCC---CeE--EE----EEeeecCCCCeEEEEECCCCCEEEEEeCCC
Q 017296 250 VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST---GSC--VI----KKEINLERPGISGTSIRPDSKIAATAGWDR 320 (374)
Q Consensus 250 ~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~---~~~--~~----~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg 320 (374)
.|.+.|..++..|++..+++||.|.+|++||+.... +.. .+ ...+.. ...+.++.+|||++++|.+-.|.
T Consensus 452 AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel-~ddvL~v~~Spdgk~LaVsLLdn 530 (888)
T KOG0306|consen 452 AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLEL-EDDVLCVSVSPDGKLLAVSLLDN 530 (888)
T ss_pred ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEec-cccEEEEEEcCCCcEEEEEeccC
Confidence 899999999999999999999999999999985211 111 01 011222 24689999999999999999999
Q ss_pred eEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCCC
Q 017296 321 RVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPPH 373 (374)
Q Consensus 321 ~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~~ 373 (374)
+|+||-+.+.++.-.+.||.-+|.|+.+|||+++++|||+|.+||+|-++-++
T Consensus 531 TVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGD 583 (888)
T KOG0306|consen 531 TVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGD 583 (888)
T ss_pred eEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccch
Confidence 99999999999999999999999999999999999999999999999886543
No 26
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2.8e-30 Score=218.81 Aligned_cols=290 Identities=20% Similarity=0.304 Sum_probs=214.1
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
.-+.+|..|+++|.+++.+|+.++++||+.|..-.||+..+|..+..+.+|.. .|.++.|+. ++.+|+||.-+|.|
T Consensus 55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKD--SVt~~~Fsh--dgtlLATGdmsG~v 130 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKD--SVTCCSFSH--DGTLLATGDMSGKV 130 (399)
T ss_pred cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCC--ceEEEEEcc--CceEEEecCCCccE
Confidence 35678999999999999999999999999999999999999998888888864 488999987 67899999999999
Q ss_pred EEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc
Q 017296 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (374)
+||++.++... +.+. .+.. ++++- ...+ ...++++|
T Consensus 131 ~v~~~stg~~~--------------~~~~------------~e~~---dieWl--------------~WHp-~a~illAG 166 (399)
T KOG0296|consen 131 LVFKVSTGGEQ--------------WKLD------------QEVE---DIEWL--------------KWHP-RAHILLAG 166 (399)
T ss_pred EEEEcccCceE--------------EEee------------cccC---ceEEE--------------Eecc-cccEEEee
Confidence 99999987421 0000 0000 00000 0011 12467889
Q ss_pred cCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeee
Q 017296 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~ 248 (374)
+.|+.+=+|.+.+......+..+.. + .....|.|+ | .++++|+.||+|++||+++. .++..+
T Consensus 167 ~~DGsvWmw~ip~~~~~kv~~Gh~~--------~-----ct~G~f~pd---G-Kr~~tgy~dgti~~Wn~ktg-~p~~~~ 228 (399)
T KOG0296|consen 167 STDGSVWMWQIPSQALCKVMSGHNS--------P-----CTCGEFIPD---G-KRILTGYDDGTIIVWNPKTG-QPLHKI 228 (399)
T ss_pred cCCCcEEEEECCCcceeeEecCCCC--------C-----cccccccCC---C-ceEEEEecCceEEEEecCCC-ceeEEe
Confidence 9999999999998655555543211 1 111234443 3 37999999999999999763 333322
Q ss_pred ec---------------------------------------------------CccCeEEEEE---ecCCCceEEEecCC
Q 017296 249 KV---------------------------------------------------HLEPVLCLSI---DESCNGGISGGADQ 274 (374)
Q Consensus 249 ~~---------------------------------------------------h~~~v~~~~~---~~~~~~~~s~s~D~ 274 (374)
++ +.+.+.|+.+ +...+..|.|+-||
T Consensus 229 ~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG 308 (399)
T KOG0296|consen 229 TQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDG 308 (399)
T ss_pred cccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccc
Confidence 20 1111122222 22233447789999
Q ss_pred eEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCE
Q 017296 275 KIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKL 354 (374)
Q Consensus 275 ~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~ 354 (374)
+|.|||+...+.+... .|..+|..+.|-+ ..+|++++.||+|+.||.++|+...++.+|...|..++++|+.++
T Consensus 309 ~i~iyD~a~~~~R~~c-----~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~ 382 (399)
T KOG0296|consen 309 TIAIYDLAASTLRHIC-----EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRL 382 (399)
T ss_pred eEEEEecccchhheec-----cCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcE
Confidence 9999999765433322 2556799999999 779999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcEEEecCC
Q 017296 355 MASASEDSTVALWELY 370 (374)
Q Consensus 355 las~s~D~~v~~W~~~ 370 (374)
++|+|.|++.+++...
T Consensus 383 vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 383 VVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEecCCCeEEEEecC
Confidence 9999999999999764
No 27
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.2e-31 Score=242.47 Aligned_cols=303 Identities=17% Similarity=0.240 Sum_probs=220.7
Q ss_pred CeEEeecCCCceeEEEE-eCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 10 PVAVLRGHRASVTDVCF-HQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 10 ~~~~l~gH~~~V~~l~~-~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
+...+.|..+.|.+++| .|+.++|+.++....+|+++..+..+. .+.+|.. .++++.... .+..++|||.|.++
T Consensus 315 i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e--~vlSL~~~~--~g~llat~sKD~sv 389 (775)
T KOG0319|consen 315 IVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTE--AVLSLDVWS--SGDLLATGSKDKSV 389 (775)
T ss_pred EehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchh--heeeeeecc--cCcEEEEecCCceE
Confidence 44556788999999999 578899999999999999998777664 6667764 366666322 34689999999999
Q ss_pred EEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc
Q 017296 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (374)
|+|.++++.... ..+.....|...+ + .+. + ..++--+++++
T Consensus 390 ilWr~~~~~~~~---~~~a~~~gH~~sv------------------------g-ava----------~-~~~~asffvsv 430 (775)
T KOG0319|consen 390 ILWRLNNNCSKS---LCVAQANGHTNSV------------------------G-AVA----------G-SKLGASFFVSV 430 (775)
T ss_pred EEEEecCCcchh---hhhhhhccccccc------------------------c-eee----------e-cccCccEEEEe
Confidence 999996542210 0111111110000 0 000 0 01112367888
Q ss_pred cCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeee
Q 017296 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~ 248 (374)
+.|.++++|++...+...... .....+....+.-...|.++ . ++...+++||+|.+.+||+++. .....++
T Consensus 431 S~D~tlK~W~l~~s~~~~~~~-~~~~~~t~~aHdKdIN~Vai---a----~ndkLiAT~SqDktaKiW~le~-~~l~~vL 501 (775)
T KOG0319|consen 431 SQDCTLKLWDLPKSKETAFPI-VLTCRYTERAHDKDINCVAI---A----PNDKLIATGSQDKTAKIWDLEQ-LRLLGVL 501 (775)
T ss_pred cCCceEEEecCCCcccccccc-eehhhHHHHhhcccccceEe---c----CCCceEEecccccceeeecccC-ceEEEEe
Confidence 899999999998733211100 00000011112222233332 1 2234689999999999999984 4557789
Q ss_pred ecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcc
Q 017296 249 KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYR 328 (374)
Q Consensus 249 ~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~ 328 (374)
.+|+..|.|+.|.+..+.++|+|.|.+||+|.+... .|+ +.+..|...|..+.|=.+++.++|++.||-+++|+++
T Consensus 502 sGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f--SCl--kT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnik 577 (775)
T KOG0319|consen 502 SGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF--SCL--KTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIK 577 (775)
T ss_pred eCCccceEEEEeccccceeEeccCCceEEEEEeccc--eee--eeecCccceeEeeeeeeCCcEEEeccCCCcEEEEecc
Confidence 999999999999998888999999999999999654 333 5567788889999999999999999999999999999
Q ss_pred CCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 329 KGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 329 ~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
++++..++.+|...|++++-+|+...++||+.|+.|-+|.-
T Consensus 578 t~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD 618 (775)
T KOG0319|consen 578 TNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKD 618 (775)
T ss_pred chhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeec
Confidence 99999999999999999999999999999999999999953
No 28
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2e-30 Score=212.53 Aligned_cols=256 Identities=20% Similarity=0.293 Sum_probs=186.2
Q ss_pred CCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCe
Q 017296 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (374)
Q Consensus 8 ~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~ 87 (374)
..++..|.||+..|..+..+++|++.+|+|.|+++++||+.+|++...+.+|.. .+.++++++ +.++++||+.|.|
T Consensus 53 G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~--dVlsva~s~--dn~qivSGSrDkT 128 (315)
T KOG0279|consen 53 GVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTK--DVLSVAFST--DNRQIVSGSRDKT 128 (315)
T ss_pred CceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCC--ceEEEEecC--CCceeecCCCcce
Confidence 468899999999999999999999999999999999999999998888888875 488999987 6689999999999
Q ss_pred EEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEc
Q 017296 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (374)
Q Consensus 88 vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (374)
|++|++..+.. ..+..... ..-..|..+. |.....++++
T Consensus 129 iklwnt~g~ck-----~t~~~~~~------------------~~WVscvrfs------------------P~~~~p~Ivs 167 (315)
T KOG0279|consen 129 IKLWNTLGVCK-----YTIHEDSH------------------REWVSCVRFS------------------PNESNPIIVS 167 (315)
T ss_pred eeeeeecccEE-----EEEecCCC------------------cCcEEEEEEc------------------CCCCCcEEEE
Confidence 99999975421 11100000 0000111121 2222457888
Q ss_pred ccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceee
Q 017296 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA 247 (374)
Q Consensus 168 ~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~ 247 (374)
++.|++||+||+++-+....+..+. .+. ....+.|+ | ...++|..||.+.+||++... .++.
T Consensus 168 ~s~DktvKvWnl~~~~l~~~~~gh~------------~~v-~t~~vSpD---G-slcasGgkdg~~~LwdL~~~k-~lys 229 (315)
T KOG0279|consen 168 ASWDKTVKVWNLRNCQLRTTFIGHS------------GYV-NTVTVSPD---G-SLCASGGKDGEAMLWDLNEGK-NLYS 229 (315)
T ss_pred ccCCceEEEEccCCcchhhcccccc------------ccE-EEEEECCC---C-CEEecCCCCceEEEEEccCCc-eeEe
Confidence 9999999999999877655554321 111 11234443 3 257889999999999998744 4554
Q ss_pred eecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeec-----CCCCeEEEEECCCCCEEEEEeCCCeE
Q 017296 248 MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINL-----ERPGISGTSIRPDSKIAATAGWDRRV 322 (374)
Q Consensus 248 ~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~-----~~~~v~~~~~sp~~~~l~s~~~dg~v 322 (374)
+ .|...|.+++|.|.... +....+..|++||++.+.....+..+... ....+.+++|++||+.|.+|..|+.|
T Consensus 230 l-~a~~~v~sl~fspnryw-L~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~i 307 (315)
T KOG0279|consen 230 L-EAFDIVNSLCFSPNRYW-LCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVI 307 (315)
T ss_pred c-cCCCeEeeEEecCCcee-EeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcE
Confidence 4 68999999999998654 44556677999999865432223222222 23456789999999999999999999
Q ss_pred EEEEcc
Q 017296 323 RIYNYR 328 (374)
Q Consensus 323 ~iwd~~ 328 (374)
++|.+.
T Consensus 308 rv~qv~ 313 (315)
T KOG0279|consen 308 RVWQVA 313 (315)
T ss_pred EEEEee
Confidence 999874
No 29
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.1e-31 Score=227.75 Aligned_cols=300 Identities=21% Similarity=0.263 Sum_probs=212.8
Q ss_pred CCCCCCCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccce---eeeeeeeeceeeeEEeccCCcccccee
Q 017296 3 KRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT---VSSSWVHSAAHGIVSVATGPSIGLNKV 79 (374)
Q Consensus 3 ~~~~~~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l 79 (374)
.+-.|.+..++|..|++.|.-+.||++|++|+|||.|.+..+|+...... .+++.+|. ..|.-+.|+| |.++|
T Consensus 209 ~~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~--~~V~yi~wSP--DdryL 284 (519)
T KOG0293|consen 209 RLQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHS--QPVSYIMWSP--DDRYL 284 (519)
T ss_pred cccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeeccc--CceEEEEECC--CCCeE
Confidence 34556788899999999999999999999999999999999999754332 45666665 3477788888 67899
Q ss_pred eeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCC
Q 017296 80 ISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAE 159 (374)
Q Consensus 80 ~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (374)
++++.|..+++||+.+|.+...-.. ... + ...+. ...++
T Consensus 285 laCg~~e~~~lwDv~tgd~~~~y~~-----------------~~~----~--S~~sc------------------~W~pD 323 (519)
T KOG0293|consen 285 LACGFDEVLSLWDVDTGDLRHLYPS-----------------GLG----F--SVSSC------------------AWCPD 323 (519)
T ss_pred EecCchHheeeccCCcchhhhhccc-----------------CcC----C--Cccee------------------EEccC
Confidence 9999999999999999864321000 000 0 00000 01123
Q ss_pred CCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEecc
Q 017296 160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239 (374)
Q Consensus 160 ~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~ 239 (374)
+.+ +++|+.|+++..||+.....-.- + + .......++++. .+|. .+++-..|..|++|+.+
T Consensus 324 g~~--~V~Gs~dr~i~~wdlDgn~~~~W--~----g----vr~~~v~dlait------~Dgk-~vl~v~~d~~i~l~~~e 384 (519)
T KOG0293|consen 324 GFR--FVTGSPDRTIIMWDLDGNILGNW--E----G----VRDPKVHDLAIT------YDGK-YVLLVTVDKKIRLYNRE 384 (519)
T ss_pred Cce--eEecCCCCcEEEecCCcchhhcc--c----c----cccceeEEEEEc------CCCc-EEEEEecccceeeechh
Confidence 333 67899999999999875431100 0 0 000122233321 2343 46666789999999986
Q ss_pred CCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCC--CCeEEEEECC-CCCEEEEE
Q 017296 240 NPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLER--PGISGTSIRP-DSKIAATA 316 (374)
Q Consensus 240 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~--~~v~~~~~sp-~~~~l~s~ 316 (374)
.. ..+. +.....+|++++++.++..++..-.+..+.+||++. .+... ...+|. ..+-.-||-- +..+++||
T Consensus 385 ~~-~dr~-lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e--~~lv~--kY~Ghkq~~fiIrSCFgg~~~~fiaSG 458 (519)
T KOG0293|consen 385 AR-VDRG-LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEE--NKLVR--KYFGHKQGHFIIRSCFGGGNDKFIASG 458 (519)
T ss_pred hh-hhhc-cccccCceeEEEEcCCCcEEEEEcccCeeEEeecch--hhHHH--HhhcccccceEEEeccCCCCcceEEec
Confidence 52 2221 334567999999999999889999999999999973 22111 111221 1233346653 56899999
Q ss_pred eCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCC-EEEEEeCCCcEEEecCCCC
Q 017296 317 GWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCK-LMASASEDSTVALWELYPP 372 (374)
Q Consensus 317 ~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~-~las~s~D~~v~~W~~~~~ 372 (374)
++|+.|.||+..+++++.++.||...|++|+|+|... ++||||.||+||||...++
T Consensus 459 SED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 459 SEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred CCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 9999999999999999999999999999999999655 8999999999999998754
No 30
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.98 E-value=2.6e-31 Score=214.53 Aligned_cols=289 Identities=20% Similarity=0.330 Sum_probs=207.6
Q ss_pred eEEeecCCCceeEEEEeC---CCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCe
Q 017296 11 VAVLRGHRASVTDVCFHQ---TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (374)
Q Consensus 11 ~~~l~gH~~~V~~l~~~~---~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~ 87 (374)
..+..||+.+|..|+|+| +|=+|+|++.|+.-.+-+-.+|..+.++.+|..+ +-...+.. +-.+.+|++.|-+
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkga--vw~~~l~~--na~~aasaaadft 82 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGA--VWSATLNK--NATRAASAAADFT 82 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcc--eeeeecCc--hhhhhhhhcccch
Confidence 357899999999999985 6778999999999999999999999999988644 33333322 2246789999999
Q ss_pred EEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEc
Q 017296 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (374)
Q Consensus 88 vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (374)
-++||..+|.... + +..++..+..++ ..+..+ +++
T Consensus 83 akvw~a~tgdelh---------s-------f~hkhivk~~af----------------------------~~ds~~-llt 117 (334)
T KOG0278|consen 83 AKVWDAVTGDELH---------S-------FEHKHIVKAVAF----------------------------SQDSNY-LLT 117 (334)
T ss_pred hhhhhhhhhhhhh---------h-------hhhhheeeeEEe----------------------------cccchh-hhc
Confidence 9999998874211 0 011111111111 011122 456
Q ss_pred ccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceee
Q 017296 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA 247 (374)
Q Consensus 168 ~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~ 247 (374)
|+.++.+||+|++..+.-..-.. ++....+... +... . ..+++.+.|++||+||.++ +..+++
T Consensus 118 gg~ekllrvfdln~p~App~E~~-------ghtg~Ir~v~-----wc~e--D--~~iLSSadd~tVRLWD~rT-gt~v~s 180 (334)
T KOG0278|consen 118 GGQEKLLRVFDLNRPKAPPKEIS-------GHTGGIRTVL-----WCHE--D--KCILSSADDKTVRLWDHRT-GTEVQS 180 (334)
T ss_pred cchHHHhhhhhccCCCCCchhhc-------CCCCcceeEE-----Eecc--C--ceEEeeccCCceEEEEecc-CcEEEE
Confidence 77788999999987652111111 1111111111 1111 1 2488889999999999997 444555
Q ss_pred eecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEc
Q 017296 248 MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNY 327 (374)
Q Consensus 248 ~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~ 327 (374)
+. ...+|+++.+++++. +++-..-++|++||.+... +.+..+.. ..|.+.+++|+...+++|++|..++.||.
T Consensus 181 L~-~~s~VtSlEvs~dG~-ilTia~gssV~Fwdaksf~----~lKs~k~P-~nV~SASL~P~k~~fVaGged~~~~kfDy 253 (334)
T KOG0278|consen 181 LE-FNSPVTSLEVSQDGR-ILTIAYGSSVKFWDAKSFG----LLKSYKMP-CNVESASLHPKKEFFVAGGEDFKVYKFDY 253 (334)
T ss_pred Ee-cCCCCcceeeccCCC-EEEEecCceeEEecccccc----ceeeccCc-cccccccccCCCceEEecCcceEEEEEec
Confidence 53 577999999999886 4677778899999986432 11222222 35888999999999999999999999999
Q ss_pred cCCeEEEEe-cccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 328 RKGSALAIL-KYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 328 ~~~~~~~~~-~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
.+++.+..+ ++|.++|.+|.|+|||+..|+||+||+||||...+.
T Consensus 254 ~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 254 NTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred cCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCC
Confidence 999998886 899999999999999999999999999999988654
No 31
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=4e-31 Score=237.73 Aligned_cols=250 Identities=20% Similarity=0.296 Sum_probs=198.7
Q ss_pred CeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEE
Q 017296 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (374)
Q Consensus 10 ~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vr 89 (374)
..+++..|++.|.+|.|+|...+++++-..|.|.+||.++...+..+.. ....+.++.|-. .-+++++|+.|..||
T Consensus 5 ~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV--~~~PvRa~kfia--RknWiv~GsDD~~Ir 80 (794)
T KOG0276|consen 5 FKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEV--SEVPVRAAKFIA--RKNWIVTGSDDMQIR 80 (794)
T ss_pred hhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeee--cccchhhheeee--ccceEEEecCCceEE
Confidence 3445667999999999999999999999999999999988777766643 334566666655 337899999999999
Q ss_pred EEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEccc
Q 017296 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE 169 (374)
Q Consensus 90 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (374)
+++.++++. ++....|
T Consensus 81 Vfnynt~ek-------V~~FeAH--------------------------------------------------------- 96 (794)
T KOG0276|consen 81 VFNYNTGEK-------VKTFEAH--------------------------------------------------------- 96 (794)
T ss_pred EEeccccee-------eEEeecc---------------------------------------------------------
Confidence 999987631 1000000
Q ss_pred CCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeee
Q 017296 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK 249 (374)
Q Consensus 170 ~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~ 249 (374)
+..| +++ + ..| ..+.++++|+|-+|++||.++.=...+++.
T Consensus 97 -~DyI-----------R~i--------------------a---vHP----t~P~vLtsSDDm~iKlW~we~~wa~~qtfe 137 (794)
T KOG0276|consen 97 -SDYI-----------RSI--------------------A---VHP----TLPYVLTSSDDMTIKLWDWENEWACEQTFE 137 (794)
T ss_pred -ccce-----------eee--------------------e---ecC----CCCeEEecCCccEEEEeeccCceeeeeEEc
Confidence 0011 111 1 111 123689999999999999987555678899
Q ss_pred cCccCeEEEEEec-CCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECC--CCCEEEEEeCCCeEEEEE
Q 017296 250 VHLEPVLCLSIDE-SCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP--DSKIAATAGWDRRVRIYN 326 (374)
Q Consensus 250 ~h~~~v~~~~~~~-~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~s~~~dg~v~iwd 326 (374)
||..-|.+++|.| +...++++|.|++||+|.+...... ..+.+|..+|.++.|=| |..||+||+.|.+|+|||
T Consensus 138 GH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~n----fTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWD 213 (794)
T KOG0276|consen 138 GHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPN----FTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWD 213 (794)
T ss_pred CcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCc----eeeeccccCcceEEeccCCCcceEEecCCCceEEEee
Confidence 9999999999987 4567999999999999999755433 33557888999999865 567999999999999999
Q ss_pred ccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 327 YRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 327 ~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
.++..+++++.||...|+.+-|+|.=..++|||+||+||||+-.
T Consensus 214 yQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~ 257 (794)
T KOG0276|consen 214 YQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSK 257 (794)
T ss_pred cchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCc
Confidence 99999999999999999999999999999999999999999753
No 32
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=7.5e-30 Score=217.20 Aligned_cols=308 Identities=20% Similarity=0.294 Sum_probs=210.2
Q ss_pred CCCCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCc-cccceeeeccc
Q 017296 6 PPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPS-IGLNKVISQGR 84 (374)
Q Consensus 6 ~~~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~s~~~ 84 (374)
.||+|...+. |.+.|.+|... ++.++||+.||++++||. .|+....+.+|... +.++++-.. .....|+++|.
T Consensus 94 ~aP~pl~~~~-hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~--ik~v~~v~~n~~~~~fvsas~ 167 (423)
T KOG0313|consen 94 TAPKPLQCFL-HDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGP--IKSVAWVIKNSSSCLFVSASM 167 (423)
T ss_pred CCCCcccccc-chhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcc--eeeeEEEecCCccceEEEecC
Confidence 4556665554 99999988876 789999999999999996 57888888888754 444443221 11236999999
Q ss_pred cCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceE
Q 017296 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM 164 (374)
Q Consensus 85 D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (374)
|+++++|.++.++..... ++...+|-.. +. .+........
T Consensus 168 Dqtl~Lw~~~~~~~~~~~---~~~~~GHk~~---------------------------V~----------sVsv~~sgtr 207 (423)
T KOG0313|consen 168 DQTLRLWKWNVGENKVKA---LKVCRGHKRS---------------------------VD----------SVSVDSSGTR 207 (423)
T ss_pred CceEEEEEecCchhhhhH---HhHhcccccc---------------------------ee----------EEEecCCCCe
Confidence 999999999876421100 0000011000 00 0001112335
Q ss_pred EEcccCCCeEEEEecCCCceeEEeccCc-------------cCCCCCcCCCCC-cceeEEEeeecCCCCCceEEEEEecC
Q 017296 165 AVAGEQLSEVEIWDLNTAERCTRLHQNS-------------CGGSPNFSSKGR-GMCMAVQAYLPSKSQGFVNVLAGYED 230 (374)
Q Consensus 165 ~~~~~~d~~i~vWd~~~~~~~~~~~~~~-------------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~gs~d 230 (374)
+++|+.|.++++|+.++.. ..++.... ....+...-.+- .-++++ .+. + ...+++++.|
T Consensus 208 ~~SgS~D~~lkiWs~~~~~-~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V-~w~-d----~~v~yS~SwD 280 (423)
T KOG0313|consen 208 FCSGSWDTMLKIWSVETDE-EDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSV-VWS-D----ATVIYSVSWD 280 (423)
T ss_pred EEeecccceeeecccCCCc-cccccccchhhhhhhhhhhcccccCceEEecccccceeeE-EEc-C----CCceEeeccc
Confidence 7889999999999933221 11110000 000000000000 001111 121 1 2358899999
Q ss_pred CcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCC-
Q 017296 231 GSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPD- 309 (374)
Q Consensus 231 g~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~- 309 (374)
.+|+.||+...+. ..++. -..+++|+...+....+++||.|..|+|||-+...++.. ...+..|...|.++.++|.
T Consensus 281 HTIk~WDletg~~-~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v-~~s~~gH~nwVssvkwsp~~ 357 (423)
T KOG0313|consen 281 HTIKVWDLETGGL-KSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVV-SQSLIGHKNWVSSVKWSPTN 357 (423)
T ss_pred ceEEEEEeecccc-eeeee-cCcceeEeecccccceeeecCCCCceeecCCCCCCCcee-EEeeecchhhhhheecCCCC
Confidence 9999999987543 33332 356899999999888899999999999999987766655 3456678889999999995
Q ss_pred CCEEEEEeCCCeEEEEEccCCe-EEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 310 SKIAATAGWDRRVRIYNYRKGS-ALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 310 ~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
...++||+.|+++++||+++.+ +++.+.+|...|.++.|+ ++.+|+|||.|++++|+.-.
T Consensus 358 ~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 358 EFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred ceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 4558999999999999999988 899999999999999995 77899999999999998653
No 33
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.6e-29 Score=237.56 Aligned_cols=293 Identities=24% Similarity=0.349 Sum_probs=219.1
Q ss_pred CeEEeecC-CCceeEEEEeCCCCEEEEecCCCcEEEEeCcccc--eeeeeeeeeceeeeEEeccCCccccceeeeccccC
Q 017296 10 PVAVLRGH-RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (374)
Q Consensus 10 ~~~~l~gH-~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ 86 (374)
...++.+| ...|.++.|+++|+.|++++.|+.+++|+....+ .+..+.+|. ..|..++|++ +++.+++++.|+
T Consensus 150 ~~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~--~~v~~~~fs~--d~~~l~s~s~D~ 225 (456)
T KOG0266|consen 150 LEQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHT--RGVSDVAFSP--DGSYLLSGSDDK 225 (456)
T ss_pred eeeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccc--cceeeeEECC--CCcEEEEecCCc
Confidence 36677676 8999999999999999999999999999997666 555555665 4588899988 567999999999
Q ss_pred eEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEE
Q 017296 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (374)
Q Consensus 87 ~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (374)
+||+||+..+.. .+++...|...+ .+. .+.+.+ -+++
T Consensus 226 tiriwd~~~~~~------~~~~l~gH~~~v-----------------~~~------------------~f~p~g--~~i~ 262 (456)
T KOG0266|consen 226 TLRIWDLKDDGR------NLKTLKGHSTYV-----------------TSV------------------AFSPDG--NLLV 262 (456)
T ss_pred eEEEeeccCCCe------EEEEecCCCCce-----------------EEE------------------EecCCC--CEEE
Confidence 999999944311 112211111000 000 122222 3577
Q ss_pred cccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCC-ce
Q 017296 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI-PL 245 (374)
Q Consensus 167 ~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~-~~ 245 (374)
+|+.|++|+|||++++++...+..+. . ...+ ..|.++ + ..+++++.||.|++||+.+... +.
T Consensus 263 Sgs~D~tvriWd~~~~~~~~~l~~hs--------~--~is~---~~f~~d---~-~~l~s~s~d~~i~vwd~~~~~~~~~ 325 (456)
T KOG0266|consen 263 SGSDDGTVRIWDVRTGECVRKLKGHS--------D--GISG---LAFSPD---G-NLLVSASYDGTIRVWDLETGSKLCL 325 (456)
T ss_pred EecCCCcEEEEeccCCeEEEeeeccC--------C--ceEE---EEECCC---C-CEEEEcCCCccEEEEECCCCceeee
Confidence 89999999999999999888886431 1 1111 123332 2 2588889999999999987432 34
Q ss_pred eeeecCccC--eEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCC---CeEEEEECCCCCEEEEEeCCC
Q 017296 246 TAMKVHLEP--VLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERP---GISGTSIRPDSKIAATAGWDR 320 (374)
Q Consensus 246 ~~~~~h~~~--v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~---~v~~~~~sp~~~~l~s~~~dg 320 (374)
..+.++..+ +.++.|+|++.+++++..|+++++||+...... .....|.. .+.+..++++++++++|+.|+
T Consensus 326 ~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~ 401 (456)
T KOG0266|consen 326 KLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSV----GTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDG 401 (456)
T ss_pred ecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcce----eeecccCCcceeEecccccCCCCeEEEEeCCc
Confidence 566666555 999999999999999999999999999754321 12222222 344556688999999999999
Q ss_pred eEEEEEccCCeEEEEeccc-CCceEEEEEeCCCCEEEEEe--CCCcEEEecCC
Q 017296 321 RVRIYNYRKGSALAILKYH-HATCNAVSFSSDCKLMASAS--EDSTVALWELY 370 (374)
Q Consensus 321 ~v~iwd~~~~~~~~~~~~h-~~~v~~v~~sp~~~~las~s--~D~~v~~W~~~ 370 (374)
.|.+||..++..+..+.+| ...+..++++|...++++++ .|+.+++|...
T Consensus 402 ~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 402 SVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred eEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 9999999999989999999 88999999999999999998 79999999764
No 34
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.97 E-value=3.1e-29 Score=202.44 Aligned_cols=272 Identities=17% Similarity=0.258 Sum_probs=201.1
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccc--eeeeeeeeeceeeeEEeccCCccccceeeeccccC
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ 86 (374)
.+..+++-..+.|+.|+..|+++.|++|+. ..||++|+.++. ++.++.+|.. .|.++.|.. ++++++|||+||
T Consensus 31 ~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~k--NVtaVgF~~--dgrWMyTgseDg 105 (311)
T KOG0315|consen 31 ICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTK--NVTAVGFQC--DGRWMYTGSEDG 105 (311)
T ss_pred eEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCC--ceEEEEEee--cCeEEEecCCCc
Confidence 456666666788999999999999999885 789999998765 5777777753 488888876 679999999999
Q ss_pred eEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEE
Q 017296 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (374)
Q Consensus 87 ~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (374)
++||||++...+.+. + .+..+..+.... +++ --++
T Consensus 106 t~kIWdlR~~~~qR~--~-----------------------~~~spVn~vvlh-------------------pnQ-teLi 140 (311)
T KOG0315|consen 106 TVKIWDLRSLSCQRN--Y-----------------------QHNSPVNTVVLH-------------------PNQ-TELI 140 (311)
T ss_pred eEEEEeccCcccchh--c-----------------------cCCCCcceEEec-------------------CCc-ceEE
Confidence 999999987432110 0 000000010111 111 1256
Q ss_pred cccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCC-----
Q 017296 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP----- 241 (374)
Q Consensus 167 ~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~----- 241 (374)
+|.+++.|++||+.+..+...+.... ....+. . ... +.+ ..++.+.+.|...+|++-..
T Consensus 141 s~dqsg~irvWDl~~~~c~~~liPe~-------~~~i~s--l---~v~---~dg-sml~a~nnkG~cyvW~l~~~~~~s~ 204 (311)
T KOG0315|consen 141 SGDQSGNIRVWDLGENSCTHELIPED-------DTSIQS--L---TVM---PDG-SMLAAANNKGNCYVWRLLNHQTASE 204 (311)
T ss_pred eecCCCcEEEEEccCCccccccCCCC-------Ccceee--E---EEc---CCC-cEEEEecCCccEEEEEccCCCcccc
Confidence 78889999999999876544432210 000111 1 111 123 35777888899999998431
Q ss_pred CCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCe
Q 017296 242 GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRR 321 (374)
Q Consensus 242 ~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~ 321 (374)
-.|+..++.|..-+....++|+..+++++|.|.++++|+.+.. ..+...+..|+..++..+||-|++||++|+.|++
T Consensus 205 l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~---~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~ 281 (311)
T KOG0315|consen 205 LEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF---FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHT 281 (311)
T ss_pred ceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc---eeeEEEeecCCceEEeeeeccCccEEEecCCCCc
Confidence 2356678889999999999999999999999999999998754 3445566778889999999999999999999999
Q ss_pred EEEEEccCCeEEEEecccCCceEEEEEe
Q 017296 322 VRIYNYRKGSALAILKYHHATCNAVSFS 349 (374)
Q Consensus 322 v~iwd~~~~~~~~~~~~h~~~v~~v~~s 349 (374)
+|+|++..++.+..+++|.....+++..
T Consensus 282 ~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 282 ARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred eeecccccCceeeecCCcccccEEEEee
Confidence 9999999999999999998887777753
No 35
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=1.1e-31 Score=226.12 Aligned_cols=252 Identities=23% Similarity=0.413 Sum_probs=177.1
Q ss_pred CCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCe
Q 017296 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (374)
Q Consensus 8 ~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~ 87 (374)
...+.+|.||+++|.|+.| +.++++|||.|.+|+|||.++|+++.++.+|-. .+.-+.|+. .+++|++.|.+
T Consensus 227 ~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~tlihHce--aVLhlrf~n----g~mvtcSkDrs 298 (499)
T KOG0281|consen 227 LECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCE--AVLHLRFSN----GYMVTCSKDRS 298 (499)
T ss_pred HHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhhHHhhhcc--eeEEEEEeC----CEEEEecCCce
Confidence 3567789999999999999 566999999999999999999999998877754 466666654 68999999999
Q ss_pred EEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEc
Q 017296 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (374)
Q Consensus 88 vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (374)
+++||+.+..-++ ..+..-+|..+ +. ....+.+| +++
T Consensus 299 iaVWdm~sps~it----~rrVLvGHrAa----------------------------VN----------vVdfd~ky-IVs 335 (499)
T KOG0281|consen 299 IAVWDMASPTDIT----LRRVLVGHRAA----------------------------VN----------VVDFDDKY-IVS 335 (499)
T ss_pred eEEEeccCchHHH----HHHHHhhhhhh----------------------------ee----------eeccccce-EEE
Confidence 9999998653110 00000011000 00 00122344 556
Q ss_pred ccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceee
Q 017296 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA 247 (374)
Q Consensus 168 ~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~ 247 (374)
++.|.+|++|++.+++.++++..+. ++.. ...+ ....+++||.|.+|++||++. +..+..
T Consensus 336 ASgDRTikvW~~st~efvRtl~gHk-----------RGIA--ClQY------r~rlvVSGSSDntIRlwdi~~-G~cLRv 395 (499)
T KOG0281|consen 336 ASGDRTIKVWSTSTCEFVRTLNGHK-----------RGIA--CLQY------RDRLVVSGSSDNTIRLWDIEC-GACLRV 395 (499)
T ss_pred ecCCceEEEEeccceeeehhhhccc-----------ccce--ehhc------cCeEEEecCCCceEEEEeccc-cHHHHH
Confidence 6678999999999999888886541 1211 1111 112588899999999999986 567888
Q ss_pred eecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEc
Q 017296 248 MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNY 327 (374)
Q Consensus 248 ~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~ 327 (374)
++||.+-|.|+.|+.+. +++|+.||.|++||+.... |.+..+ +++
T Consensus 396 LeGHEeLvRciRFd~kr--IVSGaYDGkikvWdl~aal-----------------------dpra~~-----~~~----- 440 (499)
T KOG0281|consen 396 LEGHEELVRCIRFDNKR--IVSGAYDGKIKVWDLQAAL-----------------------DPRAPA-----STL----- 440 (499)
T ss_pred HhchHHhhhheeecCce--eeeccccceEEEEeccccc-----------------------CCcccc-----cch-----
Confidence 99999999999997643 5777777777777764210 000000 111
Q ss_pred cCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCC
Q 017296 328 RKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 328 ~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~ 371 (374)
++.++-.|.+.|..+.| |...+++++.|.+|-|||+.+
T Consensus 441 ----Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~ 478 (499)
T KOG0281|consen 441 ----CLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLN 478 (499)
T ss_pred ----HHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCC
Confidence 23345568999999999 778999999999999999954
No 36
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.97 E-value=3.4e-29 Score=218.59 Aligned_cols=279 Identities=15% Similarity=0.284 Sum_probs=210.3
Q ss_pred CCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCC
Q 017296 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG 97 (374)
Q Consensus 18 ~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~ 97 (374)
...|++|+|+.+|.+|++|+.||.+++|+. .|..+.++..|. ..|.++-+.. .+++++|++-|+++.+||.-+|+
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~Hk--gPI~slKWnk--~G~yilS~~vD~ttilwd~~~g~ 309 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHK--GPIFSLKWNK--KGTYILSGGVDGTTILWDAHTGT 309 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccC--CceEEEEEcC--CCCEEEeccCCccEEEEeccCce
Confidence 468999999999999999999999999996 466667766665 4588888876 67899999999999999998774
Q ss_pred CCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEE
Q 017296 98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIW 177 (374)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vW 177 (374)
+.. ...+|- .+ ..++++.. ..-+++.+.|+.|+|.
T Consensus 310 ~~q-------~f~~~s-----------------~~--~lDVdW~~-------------------~~~F~ts~td~~i~V~ 344 (524)
T KOG0273|consen 310 VKQ-------QFEFHS-----------------AP--ALDVDWQS-------------------NDEFATSSTDGCIHVC 344 (524)
T ss_pred EEE-------eeeecc-----------------CC--ccceEEec-------------------CceEeecCCCceEEEE
Confidence 311 000000 00 00111100 0124566678899999
Q ss_pred ecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEE
Q 017296 178 DLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLC 257 (374)
Q Consensus 178 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~ 257 (374)
-+....+..++..+. +...+ ..+.+. + .+|+++|.|++++||.+.. ......+++|...|..
T Consensus 345 kv~~~~P~~t~~GH~----------g~V~a---lk~n~t---g-~LLaS~SdD~TlkiWs~~~-~~~~~~l~~Hskei~t 406 (524)
T KOG0273|consen 345 KVGEDRPVKTFIGHH----------GEVNA---LKWNPT---G-SLLASCSDDGTLKIWSMGQ-SNSVHDLQAHSKEIYT 406 (524)
T ss_pred EecCCCcceeeeccc----------CceEE---EEECCC---C-ceEEEecCCCeeEeeecCC-Ccchhhhhhhccceee
Confidence 887776666665432 11111 123322 2 3688999999999999865 4556778899999999
Q ss_pred EEEecCCC---------ceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcc
Q 017296 258 LSIDESCN---------GGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYR 328 (374)
Q Consensus 258 ~~~~~~~~---------~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~ 328 (374)
+.++|.+. .+++++.|+++++||+......+. +..|+..|++++|+|+++|+|+|+.||.|.+|+.+
T Consensus 407 ~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~----f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~ 482 (524)
T KOG0273|consen 407 IKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHT----LMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTK 482 (524)
T ss_pred EeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEe----eccCCCceEEEEecCCCcEEEecCCCCeeEecccc
Confidence 99977653 468999999999999976543333 44577889999999999999999999999999999
Q ss_pred CCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 329 KGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 329 ~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
+++.++.+.+ .+.|..|.|+-+|.+|..+-.|+.+++-|+
T Consensus 483 ~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 483 TGKLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred chheeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 9999988874 557999999999999998888999998775
No 37
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=1e-30 Score=224.60 Aligned_cols=292 Identities=20% Similarity=0.291 Sum_probs=214.6
Q ss_pred CCCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccc--eeeeeeeeeceeeeEEeccCCccccceeeeccc
Q 017296 7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (374)
Q Consensus 7 ~~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 84 (374)
|......+.-|.+.|..+.|-+....|++|+.|..|++|+....+ .+.++.+- ...+..+.+.+ ++.++++++.
T Consensus 164 pS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs--~g~it~~d~d~--~~~~~iAas~ 239 (459)
T KOG0288|consen 164 PSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGS--LGNITSIDFDS--DNKHVIAASN 239 (459)
T ss_pred chhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhcc--CCCcceeeecC--CCceEEeecC
Confidence 456677889999999999999988999999999999999986554 23343332 23477777776 5689999999
Q ss_pred cCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceE
Q 017296 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM 164 (374)
Q Consensus 85 D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (374)
|+.+|+|++...+... +..+|...+...+.. .. ..-
T Consensus 240 d~~~r~Wnvd~~r~~~-------TLsGHtdkVt~ak~~-----------------------------------~~--~~~ 275 (459)
T KOG0288|consen 240 DKNLRLWNVDSLRLRH-------TLSGHTDKVTAAKFK-----------------------------------LS--HSR 275 (459)
T ss_pred CCceeeeeccchhhhh-------hhcccccceeeehhh-----------------------------------cc--ccc
Confidence 9999999998765322 222222211111100 00 112
Q ss_pred EEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCc
Q 017296 165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 244 (374)
Q Consensus 165 ~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~ 244 (374)
+++|+.|.+|++||+....|..++... ..+.-.+.. ...+++|..|+.||+||.+.+. +
T Consensus 276 vVsgs~DRtiK~WDl~k~~C~kt~l~~---------S~cnDI~~~-----------~~~~~SgH~DkkvRfwD~Rs~~-~ 334 (459)
T KOG0288|consen 276 VVSGSADRTIKLWDLQKAYCSKTVLPG---------SQCNDIVCS-----------ISDVISGHFDKKVRFWDIRSAD-K 334 (459)
T ss_pred eeeccccchhhhhhhhhhheecccccc---------ccccceEec-----------ceeeeecccccceEEEeccCCc-e
Confidence 788999999999999987765544321 111111111 1247889999999999998754 3
Q ss_pred eeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 017296 245 LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRI 324 (374)
Q Consensus 245 ~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~i 324 (374)
......+. .|+++....++..+++++.|.++++.|+....-.+.+..+--...+..+.+.|||++.|+|+|+.||.|+|
T Consensus 335 ~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~i 413 (459)
T KOG0288|consen 335 TRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYI 413 (459)
T ss_pred eeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEE
Confidence 44444444 99999999999999999999999999998654333333221112234778999999999999999999999
Q ss_pred EEccCCeEEEEecccCC--ceEEEEEeCCCCEEEEEeCCCcEEEec
Q 017296 325 YNYRKGSALAILKYHHA--TCNAVSFSSDCKLMASASEDSTVALWE 368 (374)
Q Consensus 325 wd~~~~~~~~~~~~h~~--~v~~v~~sp~~~~las~s~D~~v~~W~ 368 (374)
|++.++++-+.+..... .|++++|+|.|..|++++.++.+.+|.
T Consensus 414 W~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 414 WSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred EEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 99999998877765443 699999999999999999999999994
No 38
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=2.5e-28 Score=224.11 Aligned_cols=295 Identities=22% Similarity=0.348 Sum_probs=218.2
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCC-CcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCe
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTG-GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D-~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~ 87 (374)
.+++.|.--..+|..++|+..|..|+-|+.. |.+.||+..+-.-+...++|.. .+.++++++ |++.+++|+.||.
T Consensus 298 ~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~--~i~~l~YSp--Dgq~iaTG~eDgK 373 (893)
T KOG0291|consen 298 NLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSD--RITSLAYSP--DGQLIATGAEDGK 373 (893)
T ss_pred eEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecccccc--ceeeEEECC--CCcEEEeccCCCc
Confidence 4666777777899999999999999988755 7999999987767777778864 488888887 7899999999999
Q ss_pred EEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEc
Q 017296 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (374)
Q Consensus 88 vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (374)
||+||..+|-| +.+..-|...+..+ . +. ..+..+++
T Consensus 374 VKvWn~~SgfC-------~vTFteHts~Vt~v-----------------~------------------f~--~~g~~lls 409 (893)
T KOG0291|consen 374 VKVWNTQSGFC-------FVTFTEHTSGVTAV-----------------Q------------------FT--ARGNVLLS 409 (893)
T ss_pred EEEEeccCceE-------EEEeccCCCceEEE-----------------E------------------EE--ecCCEEEE
Confidence 99999988732 22211111100000 0 00 11235667
Q ss_pred ccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCC-cEEEEeccCCCCcee
Q 017296 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG-SILVWDIRNPGIPLT 246 (374)
Q Consensus 168 ~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg-~i~iwdl~~~~~~~~ 246 (374)
++-||+|+.||+...++-+++..+. +..-.|+++ + +.| ..+.+|+.|. .|.+|++.+ ++.+.
T Consensus 410 sSLDGtVRAwDlkRYrNfRTft~P~---------p~Qfscvav-----D-~sG-elV~AG~~d~F~IfvWS~qT-GqllD 472 (893)
T KOG0291|consen 410 SSLDGTVRAWDLKRYRNFRTFTSPE---------PIQFSCVAV-----D-PSG-ELVCAGAQDSFEIFVWSVQT-GQLLD 472 (893)
T ss_pred eecCCeEEeeeecccceeeeecCCC---------ceeeeEEEE-----c-CCC-CEEEeeccceEEEEEEEeec-Ceeee
Confidence 7889999999999988777775421 111123332 1 112 2456677774 599999986 66788
Q ss_pred eeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 017296 247 AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYN 326 (374)
Q Consensus 247 ~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd 326 (374)
.+.||..||.+++|++.+..++++|-|.+||+||+=.+.+... ++. ..+.+..++|+|+|+-|+++..||.|.+||
T Consensus 473 iLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vE---tl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d 548 (893)
T KOG0291|consen 473 ILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVE---TLE-IRSDVLAVSFRPDGKELAVATLDGQITFFD 548 (893)
T ss_pred hhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceee---eEe-eccceeEEEEcCCCCeEEEEEecceEEEEE
Confidence 8999999999999999999999999999999999855433221 121 235689999999999999999999999999
Q ss_pred ccCCeEEEEecc--------------------cCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 327 YRKGSALAILKY--------------------HHATCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 327 ~~~~~~~~~~~~--------------------h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
.+.+.+...+.+ -.....++.+++||+.|.+|+..+.|+|+++.+.
T Consensus 549 ~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~ 614 (893)
T KOG0291|consen 549 IKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEG 614 (893)
T ss_pred hhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchh
Confidence 987665433221 1246788999999999999999999999988643
No 39
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=7.7e-29 Score=227.32 Aligned_cols=292 Identities=20% Similarity=0.375 Sum_probs=219.1
Q ss_pred EEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEE
Q 017296 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (374)
Q Consensus 12 ~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvw 91 (374)
..+.||+..|+.++|+.+...++||+ .+.+++|+..+.+++.++.- ..+.+..|.| +++++++|...|.+.++
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~----~y~l~~~Fvp--gd~~Iv~G~k~Gel~vf 439 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITC----GYILASKFVP--GDRYIVLGTKNGELQVF 439 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEecc----ccEEEEEecC--CCceEEEeccCCceEEE
Confidence 45679999999999999888888876 57999999999999988642 2566777776 66899999999999999
Q ss_pred ecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCC
Q 017296 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL 171 (374)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 171 (374)
|+.+..... .++++.+.++.+.+ .+++.. +++|+.|
T Consensus 440 dlaS~~l~E----ti~AHdgaIWsi~~--------------------------------------~pD~~g--~vT~saD 475 (888)
T KOG0306|consen 440 DLASASLVE----TIRAHDGAIWSISL--------------------------------------SPDNKG--FVTGSAD 475 (888)
T ss_pred Eeehhhhhh----hhhccccceeeeee--------------------------------------cCCCCc--eEEecCC
Confidence 998764321 11122221211111 122222 4567778
Q ss_pred CeEEEEecCCC-----c--eeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCc
Q 017296 172 SEVEIWDLNTA-----E--RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 244 (374)
Q Consensus 172 ~~i~vWd~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~ 244 (374)
++|++||..-- . ....+.+. .........+|.. ++| ++ .+++.+--|++|++|-+.+-..
T Consensus 476 ktVkfWdf~l~~~~~gt~~k~lsl~~~-----rtLel~ddvL~v~---~Sp---dg-k~LaVsLLdnTVkVyflDtlKF- 542 (888)
T KOG0306|consen 476 KTVKFWDFKLVVSVPGTQKKVLSLKHT-----RTLELEDDVLCVS---VSP---DG-KLLAVSLLDNTVKVYFLDTLKF- 542 (888)
T ss_pred cEEEEEeEEEEeccCcccceeeeeccc-----eEEeccccEEEEE---EcC---CC-cEEEEEeccCeEEEEEecceee-
Confidence 99999985321 0 11111110 0011112334433 222 23 3678888999999999976433
Q ss_pred eeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 017296 245 LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRI 324 (374)
Q Consensus 245 ~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~i 324 (374)
.-.+-||.-||.||.++++...++|||.|.+|++|-++.+.+. +.+-+|++.|.++.|-|....+.++|.|+.|+-
T Consensus 543 flsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCH----KS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKq 618 (888)
T KOG0306|consen 543 FLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCH----KSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQ 618 (888)
T ss_pred eeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhh----hhhhcccCceeEEEEcccceeEEEecCcceEEe
Confidence 4457799999999999999999999999999999999876543 344568889999999999999999999999999
Q ss_pred EEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCC
Q 017296 325 YNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 325 wd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~ 371 (374)
||-...+.++++.+|...|++++.+|+|.+++|+|.|.+||+|.-++
T Consensus 619 WDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 619 WDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred echhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 99999999999999999999999999999999999999999997643
No 40
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=8.1e-30 Score=215.91 Aligned_cols=263 Identities=19% Similarity=0.295 Sum_probs=192.3
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcc-cceeeeeeeeeceeeeEEeccCCccccceeeeccccCe
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ-HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~ 87 (374)
+....|+||+++|..|+|+..|++|+|+|.|-.+++||..+ .+++..+.+|. |.+.++.+-|. +++++|++.|.+
T Consensus 141 ~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~--h~vS~V~f~P~--gd~ilS~srD~t 216 (406)
T KOG0295|consen 141 ELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHE--HGVSSVFFLPL--GDHILSCSRDNT 216 (406)
T ss_pred hhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcc--cceeeEEEEec--CCeeeecccccc
Confidence 45678999999999999999999999999999999999876 45677766665 66888888774 589999999999
Q ss_pred EEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEc
Q 017296 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (374)
Q Consensus 88 vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (374)
|+.|++.+|-+ +++...|.. ....+. +.....++++
T Consensus 217 ik~We~~tg~c-------v~t~~~h~e-------------------------wvr~v~------------v~~DGti~As 252 (406)
T KOG0295|consen 217 IKAWECDTGYC-------VKTFPGHSE-------------------------WVRMVR------------VNQDGTIIAS 252 (406)
T ss_pred eeEEeccccee-------EEeccCchH-------------------------hEEEEE------------ecCCeeEEEe
Confidence 99999998732 221111100 000000 1112357888
Q ss_pred ccCCCeEEEEecCCCceeEEeccCccCCCC-CcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCcee
Q 017296 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSP-NFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (374)
Q Consensus 168 ~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~ 246 (374)
++.|+++++|-++++++...+..++.+.+. .+.+... +. .+ ........+...+++++.|++||+||+.. +..+.
T Consensus 253 ~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~-~~-~i-~~at~~~~~~~~l~s~SrDktIk~wdv~t-g~cL~ 328 (406)
T KOG0295|consen 253 CSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESS-YP-SI-SEATGSTNGGQVLGSGSRDKTIKIWDVST-GMCLF 328 (406)
T ss_pred cCCCceEEEEEeccchhhhhhhccccceEEEEeccccc-Cc-ch-hhccCCCCCccEEEeecccceEEEEeccC-CeEEE
Confidence 999999999999998765555443321110 0000000 00 00 00011112334688999999999999986 46788
Q ss_pred eeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 017296 247 AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYN 326 (374)
Q Consensus 247 ~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd 326 (374)
++.+|.+.|..++|+|.|.+++++..|+++++||++.. +|+ ..+..|...++++.|+.+..++++|+-|.++++|.
T Consensus 329 tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~--~cm--k~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 329 TLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL--QCM--KTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred EEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc--eee--eccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 89999999999999999999999999999999999643 444 33457788899999999999999999999999997
Q ss_pred c
Q 017296 327 Y 327 (374)
Q Consensus 327 ~ 327 (374)
.
T Consensus 405 c 405 (406)
T KOG0295|consen 405 C 405 (406)
T ss_pred c
Confidence 4
No 41
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=2.1e-28 Score=229.78 Aligned_cols=284 Identities=22% Similarity=0.382 Sum_probs=213.6
Q ss_pred CCeEEeec-CCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeee-eeeeeceeeeEEeccCCccccceeeeccccC
Q 017296 9 DPVAVLRG-HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSS-SWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (374)
Q Consensus 9 ~~~~~l~g-H~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ 86 (374)
+....+.+ |...|.+..|+ +..+++++.|.++.+||..+++.+.. +.+|.. ++-++++.. .++.+++|+.|.
T Consensus 198 ~~~~~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g--~V~~l~~~~--~~~~lvsgS~D~ 271 (537)
T KOG0274|consen 198 RGYKVLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFG--GVWGLAFPS--GGDKLVSGSTDK 271 (537)
T ss_pred ccceeecccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCC--CceeEEEec--CCCEEEEEecCC
Confidence 34455665 66777888887 77899999999999999999998877 888864 466666653 357999999999
Q ss_pred eEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEE
Q 017296 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (374)
Q Consensus 87 ~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (374)
++|+||+.+|.+.. ...+|...+... ....++.+
T Consensus 272 t~rvWd~~sg~C~~-------~l~gh~stv~~~---------------------------------------~~~~~~~~ 305 (537)
T KOG0274|consen 272 TERVWDCSTGECTH-------SLQGHTSSVRCL---------------------------------------TIDPFLLV 305 (537)
T ss_pred cEEeEecCCCcEEE-------EecCCCceEEEE---------------------------------------EccCceEe
Confidence 99999999986532 111111111100 01134567
Q ss_pred cccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCcee
Q 017296 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (374)
Q Consensus 167 ~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~ 246 (374)
+|+.|.+|++|++++++++..+..+ . ....++. + +...+++|+.|++|++||++. ...+.
T Consensus 306 sgs~D~tVkVW~v~n~~~l~l~~~h--------~--~~V~~v~---~------~~~~lvsgs~d~~v~VW~~~~-~~cl~ 365 (537)
T KOG0274|consen 306 SGSRDNTVKVWDVTNGACLNLLRGH--------T--GPVNCVQ---L------DEPLLVSGSYDGTVKVWDPRT-GKCLK 365 (537)
T ss_pred eccCCceEEEEeccCcceEEEeccc--------c--ccEEEEE---e------cCCEEEEEecCceEEEEEhhh-ceeee
Confidence 7899999999999999988877532 1 1111211 1 123699999999999999985 67899
Q ss_pred eeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 017296 247 AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYN 326 (374)
Q Consensus 247 ~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd 326 (374)
.+++|...|.++.+++. ..+++|+.|++|++||++... .|. ..+..|...+.. +...++++++++.|++|++||
T Consensus 366 sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~-~c~--~tl~~h~~~v~~--l~~~~~~Lvs~~aD~~Ik~WD 439 (537)
T KOG0274|consen 366 SLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR-KCI--HTLQGHTSLVSS--LLLRDNFLVSSSADGTIKLWD 439 (537)
T ss_pred eecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh-hhh--hhhcCCcccccc--cccccceeEeccccccEEEee
Confidence 99999999999999875 568999999999999998652 222 223344444433 344577899999999999999
Q ss_pred ccCCeEEEEecc-cCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 327 YRKGSALAILKY-HHATCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 327 ~~~~~~~~~~~~-h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
..+++++.++.+ |...|..+++. .+.++.++.|+++++||+..+
T Consensus 440 ~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~ 484 (537)
T KOG0274|consen 440 AEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSG 484 (537)
T ss_pred cccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccC
Confidence 999999999998 67899988876 467889999999999998653
No 42
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.9e-29 Score=201.39 Aligned_cols=285 Identities=19% Similarity=0.352 Sum_probs=202.5
Q ss_pred eEEEEeC--CCCE-EEEec-----CCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEec
Q 017296 22 TDVCFHQ--TKPI-LFAGT-----TGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI 93 (374)
Q Consensus 22 ~~l~~~~--~~~~-l~s~s-----~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~ 93 (374)
+++.|+| ++++ ++++. -.|.+.|-+...++.+..........+...++++.+ ..+++++++.||++|+||.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~-~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSEN-HENQVIAASGDGSLRLFDL 90 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCC-CcceEEEEecCceEEEecc
Confidence 5689998 3333 23332 347888888865555555444444455777888875 4589999999999999995
Q ss_pred CCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCe
Q 017296 94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSE 173 (374)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 173 (374)
.... .|....+.+. ...+..+.+ .-.+..+++++.|++
T Consensus 91 ~~~s---~Pi~~~kEH~----------------------~EV~Svdwn-----------------~~~r~~~ltsSWD~T 128 (311)
T KOG0277|consen 91 TMPS---KPIHKFKEHK----------------------REVYSVDWN-----------------TVRRRIFLTSSWDGT 128 (311)
T ss_pred CCCC---cchhHHHhhh----------------------hheEEeccc-----------------cccceeEEeeccCCc
Confidence 3221 1111111100 001111111 111344566699999
Q ss_pred EEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCcc
Q 017296 174 VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLE 253 (374)
Q Consensus 174 i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~ 253 (374)
||+||...++.+.++.++ ..|+....+.|..+ ..++++|.||++++||++.+++++. +..|..
T Consensus 129 iKLW~~~r~~Sv~Tf~gh-------------~~~Iy~a~~sp~~~---nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~ 191 (311)
T KOG0277|consen 129 IKLWDPNRPNSVQTFNGH-------------NSCIYQAAFSPHIP---NLFASASGDGTLRLWDVRSPGKFMS-IEAHNS 191 (311)
T ss_pred eEeecCCCCcceEeecCC-------------ccEEEEEecCCCCC---CeEEEccCCceEEEEEecCCCceeE-EEeccc
Confidence 999999998888887543 23333334544322 2588999999999999999887666 778999
Q ss_pred CeEEEEEec-CCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCC-CCEEEEEeCCCeEEEEEccCC-
Q 017296 254 PVLCLSIDE-SCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPD-SKIAATAGWDRRVRIYNYRKG- 330 (374)
Q Consensus 254 ~v~~~~~~~-~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~s~~~dg~v~iwd~~~~- 330 (374)
.+.|+.++. +...++||+.|+.|+.||++... ....++..|...|+.+.|||- ..+|||++.|-++||||...+
T Consensus 192 Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r---~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d 268 (311)
T KOG0277|consen 192 EILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR---TPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD 268 (311)
T ss_pred eeEeecccccCCcEEEecCCCceEEEEehhhcc---ccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch
Confidence 999999954 56678999999999999997532 123567788889999999996 447899999999999999754
Q ss_pred eEEEEecccCCceEEEEEeC-CCCEEEEEeCCCcEEEecC
Q 017296 331 SALAILKYHHATCNAVSFSS-DCKLMASASEDSTVALWEL 369 (374)
Q Consensus 331 ~~~~~~~~h~~~v~~v~~sp-~~~~las~s~D~~v~~W~~ 369 (374)
..+.+.+.|.+.|..+.||+ ++.++|++++|..+++|+-
T Consensus 269 s~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 269 SAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 34567788999999999998 4559999999999999983
No 43
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=1.8e-27 Score=210.44 Aligned_cols=301 Identities=19% Similarity=0.302 Sum_probs=216.8
Q ss_pred eEEeecCCCceeEEEEeCCCC-EEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEE
Q 017296 11 VAVLRGHRASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (374)
Q Consensus 11 ~~~l~gH~~~V~~l~~~~~~~-~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vr 89 (374)
+..+.||...|+++.|-|.+. +++|||+|.+|.+++-.--+.-.++..|... +.++.++| |++.++|+|.||++-
T Consensus 140 vGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskF--V~~VRysP--DG~~Fat~gsDgki~ 215 (603)
T KOG0318|consen 140 VGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKF--VNCVRYSP--DGSRFATAGSDGKIY 215 (603)
T ss_pred cceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccc--eeeEEECC--CCCeEEEecCCccEE
Confidence 456789999999999998887 4999999999999984332322344445443 77888888 689999999999999
Q ss_pred EEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEccc
Q 017296 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE 169 (374)
Q Consensus 90 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (374)
++|-.+|+... .+.....| .+.+... ...++++++ ++.+
T Consensus 216 iyDGktge~vg----~l~~~~aH---------------------------kGsIfal--------sWsPDs~~~--~T~S 254 (603)
T KOG0318|consen 216 IYDGKTGEKVG----ELEDSDAH---------------------------KGSIFAL--------SWSPDSTQF--LTVS 254 (603)
T ss_pred EEcCCCccEEE----EecCCCCc---------------------------cccEEEE--------EECCCCceE--EEec
Confidence 99998885211 01000000 0000000 011334443 3445
Q ss_pred CCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeee
Q 017296 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK 249 (374)
Q Consensus 170 ~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~ 249 (374)
.|.++||||+.+.++..++..... ...+... ..++ ..+|++-+-+|+|.+++...+. ++..+.
T Consensus 255 aDkt~KIWdVs~~slv~t~~~~~~---------v~dqqvG--~lWq-----kd~lItVSl~G~in~ln~~d~~-~~~~i~ 317 (603)
T KOG0318|consen 255 ADKTIKIWDVSTNSLVSTWPMGST---------VEDQQVG--CLWQ-----KDHLITVSLSGTINYLNPSDPS-VLKVIS 317 (603)
T ss_pred CCceEEEEEeeccceEEEeecCCc---------hhceEEE--EEEe-----CCeEEEEEcCcEEEEecccCCC-hhheec
Confidence 578999999999998888764321 1111111 1222 1268999999999999998766 788899
Q ss_pred cCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCe------------------------------------------
Q 017296 250 VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGS------------------------------------------ 287 (374)
Q Consensus 250 ~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~------------------------------------------ 287 (374)
||..+|++++.++++..+++|+.||.|.-|+...+..-
T Consensus 318 GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t 397 (603)
T KOG0318|consen 318 GHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYT 397 (603)
T ss_pred ccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCccc
Confidence 99999999999999999999999999999997421100
Q ss_pred ------------E-------------------EEE-------------------------------------E-------
Q 017296 288 ------------C-------------------VIK-------------------------------------K------- 292 (374)
Q Consensus 288 ------------~-------------------~~~-------------------------------------~------- 292 (374)
. .++ .
T Consensus 398 ~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l 477 (603)
T KOG0318|consen 398 KSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDEL 477 (603)
T ss_pred ccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcc
Confidence 0 000 0
Q ss_pred ----eeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeE-EEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEe
Q 017296 293 ----EINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSA-LAILKYHHATCNAVSFSSDCKLMASASEDSTVALW 367 (374)
Q Consensus 293 ----~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~-~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W 367 (374)
....|+..++.++||||+.|||++...+.|-+||+.+.+. ...+.-|.+.|++++|+|+.+++||||-|.+|.||
T Consensus 478 ~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiy 557 (603)
T KOG0318|consen 478 KEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIY 557 (603)
T ss_pred cceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEE
Confidence 0012445578899999999999999999999999987664 23455699999999999999999999999999999
Q ss_pred cCCCCC
Q 017296 368 ELYPPH 373 (374)
Q Consensus 368 ~~~~~~ 373 (374)
++..|.
T Consensus 558 sv~kP~ 563 (603)
T KOG0318|consen 558 SVKKPA 563 (603)
T ss_pred EccChh
Confidence 998774
No 44
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.97 E-value=1.3e-28 Score=227.37 Aligned_cols=209 Identities=22% Similarity=0.344 Sum_probs=166.2
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
....+|.||+++|+.+.|+|+.++|+|+|+|+++|+|.+.+..++....+|... +-.+.|+| .|-+++|+|.|+|.
T Consensus 442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~P--VwdV~F~P--~GyYFatas~D~tA 517 (707)
T KOG0263|consen 442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAP--VWDVQFAP--RGYYFATASHDQTA 517 (707)
T ss_pred ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcc--eeeEEecC--CceEEEecCCCcee
Confidence 355679999999999999999999999999999999999999998888888754 44555776 46799999999999
Q ss_pred EEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc
Q 017296 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (374)
|+|........ + +.+|
T Consensus 518 rLWs~d~~~Pl-----R-----------------------------------------------------------ifag 533 (707)
T KOG0263|consen 518 RLWSTDHNKPL-----R-----------------------------------------------------------IFAG 533 (707)
T ss_pred eeeecccCCch-----h-----------------------------------------------------------hhcc
Confidence 99998753110 0 0000
Q ss_pred cCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeee
Q 017296 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~ 248 (374)
-. . ..-| ..|.|+ ..++++||.|.+||+||..+ +..+..+
T Consensus 534 hl-s-------------------------------DV~c---v~FHPN----s~Y~aTGSsD~tVRlWDv~~-G~~VRiF 573 (707)
T KOG0263|consen 534 HL-S-------------------------------DVDC---VSFHPN----SNYVATGSSDRTVRLWDVST-GNSVRIF 573 (707)
T ss_pred cc-c-------------------------------ccce---EEECCc----ccccccCCCCceEEEEEcCC-CcEEEEe
Confidence 00 0 0000 123332 23688999999999999975 5668889
Q ss_pred ecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcc
Q 017296 249 KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYR 328 (374)
Q Consensus 249 ~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~ 328 (374)
.||..+|.+++|+|.+.++++|+.||.|++||+..+. +...+..|...+.++.||.+|..||+||.|.+|++||+.
T Consensus 574 ~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~----~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 574 TGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGS----LVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred cCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCc----chhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence 9999999999999999999999999999999996542 223455677889999999999999999999999999996
Q ss_pred C
Q 017296 329 K 329 (374)
Q Consensus 329 ~ 329 (374)
.
T Consensus 650 ~ 650 (707)
T KOG0263|consen 650 K 650 (707)
T ss_pred h
Confidence 4
No 45
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.9e-27 Score=194.30 Aligned_cols=290 Identities=20% Similarity=0.269 Sum_probs=204.3
Q ss_pred CCCeEEeecCCCceeEEEEeCC-CCEEEEecCCCcEEEEeCccccee---eee-eeeeceeeeEEeccCCccccceeeec
Q 017296 8 PDPVAVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHRTV---SSS-WVHSAAHGIVSVATGPSIGLNKVISQ 82 (374)
Q Consensus 8 ~~~~~~l~gH~~~V~~l~~~~~-~~~l~s~s~D~~v~vWd~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~ 82 (374)
.-.++.+.||++.|..++|+|- |.+|+|+|.|..|++|+...++.. ..+ .+|. ..|.+++++| .+++|++|
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hk--rsVRsvAwsp--~g~~La~a 79 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHK--RSVRSVAWSP--HGRYLASA 79 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccch--heeeeeeecC--CCcEEEEe
Confidence 4567899999999999999997 889999999999999998754432 111 1344 3588999988 67899999
Q ss_pred cccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCc
Q 017296 83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPK 162 (374)
Q Consensus 83 ~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (374)
|.|.++-+|.-..++.. ++.+..+| . .+.+. +. + ..+ .
T Consensus 80 SFD~t~~Iw~k~~~efe-----cv~~lEGH----------E--------------nEVK~-Va----------w-s~s-G 117 (312)
T KOG0645|consen 80 SFDATVVIWKKEDGEFE-----CVATLEGH----------E--------------NEVKC-VA----------W-SAS-G 117 (312)
T ss_pred eccceEEEeecCCCcee-----EEeeeecc----------c--------------cceeE-EE----------E-cCC-C
Confidence 99999999997654211 00000000 0 00000 00 0 112 3
Q ss_pred eEEEcccCCCeEEEEecCCCc---eeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEecc
Q 017296 163 YMAVAGEQLSEVEIWDLNTAE---RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239 (374)
Q Consensus 163 ~~~~~~~~d~~i~vWd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~ 239 (374)
.++++++.|+.|=||.+..+. +...++.+ ..... ++ .+.|+ ...|+++|.|++||+|+-.
T Consensus 118 ~~LATCSRDKSVWiWe~deddEfec~aVL~~H--------tqDVK-~V----~WHPt----~dlL~S~SYDnTIk~~~~~ 180 (312)
T KOG0645|consen 118 NYLATCSRDKSVWIWEIDEDDEFECIAVLQEH--------TQDVK-HV----IWHPT----EDLLFSCSYDNTIKVYRDE 180 (312)
T ss_pred CEEEEeeCCCeEEEEEecCCCcEEEEeeeccc--------ccccc-EE----EEcCC----cceeEEeccCCeEEEEeec
Confidence 467788899999999887543 44444432 11111 11 23332 2368999999999999865
Q ss_pred CCC--CceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEe
Q 017296 240 NPG--IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAG 317 (374)
Q Consensus 240 ~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~ 317 (374)
... ...+++.+|...|.++.|++.+..+++++.|+++++|-+... + ...|...++.+++. + ..|+|++
T Consensus 181 ~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-----~---~~~~sr~~Y~v~W~-~-~~IaS~g 250 (312)
T KOG0645|consen 181 DDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-----L---SGMHSRALYDVPWD-N-GVIASGG 250 (312)
T ss_pred CCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-----c---chhcccceEeeeec-c-cceEecc
Confidence 222 357889999999999999999988999999999999974311 1 11233457778888 3 4799999
Q ss_pred CCCeEEEEEccCC--eE-----EEEecccCCceEEEEEeCC-CCEEEEEeCCCcEEEecCC
Q 017296 318 WDRRVRIYNYRKG--SA-----LAILKYHHATCNAVSFSSD-CKLMASASEDSTVALWELY 370 (374)
Q Consensus 318 ~dg~v~iwd~~~~--~~-----~~~~~~h~~~v~~v~~sp~-~~~las~s~D~~v~~W~~~ 370 (374)
.|+.|++|.-... ++ .+.-..|+..|++|+|.|. ..+|+|+|.||+|++|.+.
T Consensus 251 gD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 251 GDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 9999999965432 11 2233578999999999995 4599999999999999875
No 46
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.1e-28 Score=229.91 Aligned_cols=253 Identities=19% Similarity=0.360 Sum_probs=202.2
Q ss_pred EEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEE
Q 017296 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (374)
Q Consensus 12 ~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvw 91 (374)
..|+.-+..|..|+|+|...+++++-..|.|.+||..=+..+..+..|. ..|..+.|.+ ....++|||.|-.||+|
T Consensus 3 tkfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHd--GpVRgv~FH~--~qplFVSGGDDykIkVW 78 (1202)
T KOG0292|consen 3 TKFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHD--GPVRGVDFHP--TQPLFVSGGDDYKIKVW 78 (1202)
T ss_pred chhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccC--CccceeeecC--CCCeEEecCCccEEEEE
Confidence 4566778889999999999999999999999999987777777777775 4588888987 44689999999999999
Q ss_pred ecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCC
Q 017296 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL 171 (374)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 171 (374)
+..+.++.-. + .| ..
T Consensus 79 nYk~rrclft----------------L------------------------------------------------~G-Hl 93 (1202)
T KOG0292|consen 79 NYKTRRCLFT----------------L------------------------------------------------LG-HL 93 (1202)
T ss_pred ecccceehhh----------------h------------------------------------------------cc-cc
Confidence 9987543210 0 00 00
Q ss_pred CeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecC
Q 017296 172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH 251 (374)
Q Consensus 172 ~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h 251 (374)
..||. + .|.+ -.+.++++|+|.+|+||++.+ .+.+..++||
T Consensus 94 DYVRt-----------~-----------------------~FHh----eyPWIlSASDDQTIrIWNwqs-r~~iavltGH 134 (1202)
T KOG0292|consen 94 DYVRT-----------V-----------------------FFHH----EYPWILSASDDQTIRIWNWQS-RKCIAVLTGH 134 (1202)
T ss_pred ceeEE-----------e-----------------------eccC----CCceEEEccCCCeEEEEeccC-CceEEEEecC
Confidence 11211 0 1111 123699999999999999976 5678899999
Q ss_pred ccCeEEEEEecCCCceEEEecCCeEEEEEcCCC------CC-------------------eEEEEEeeecCCCCeEEEEE
Q 017296 252 LEPVLCLSIDESCNGGISGGADQKIVLYNLDHS------TG-------------------SCVIKKEINLERPGISGTSI 306 (374)
Q Consensus 252 ~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~------~~-------------------~~~~~~~~~~~~~~v~~~~~ 306 (374)
...|.|..|+|....++|+|.|.+||+||+.+- .+ -.+....+..|..+|..++|
T Consensus 135 nHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAf 214 (1202)
T KOG0292|consen 135 NHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAF 214 (1202)
T ss_pred ceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEe
Confidence 999999999998889999999999999998521 01 11223345678889999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEccCCeE--EEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 307 RPDSKIAATAGWDRRVRIYNYRKGSA--LAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 307 sp~~~~l~s~~~dg~v~iwd~~~~~~--~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
+|.-.+|+||+.|+.|++|.+...+. +.+.++|.+.|+++.|+|...+|.|.|+|++||+||++-.
T Consensus 215 hpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR 282 (1202)
T KOG0292|consen 215 HPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR 282 (1202)
T ss_pred cCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc
Confidence 99999999999999999999977664 3467899999999999999999999999999999998643
No 47
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.96 E-value=2.9e-27 Score=195.22 Aligned_cols=244 Identities=22% Similarity=0.372 Sum_probs=181.6
Q ss_pred eeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCC
Q 017296 54 SSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPK 133 (374)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (374)
.++++|.. .|.++-|++ |.++++|+|+||.+.|||.-+.. ....+.....+. +..
T Consensus 49 r~LkGH~~--Ki~~~~ws~--Dsr~ivSaSqDGklIvWDs~Ttn----K~haipl~s~WV--MtC--------------- 103 (343)
T KOG0286|consen 49 RTLKGHLN--KIYAMDWST--DSRRIVSASQDGKLIVWDSFTTN----KVHAIPLPSSWV--MTC--------------- 103 (343)
T ss_pred EEeccccc--ceeeeEecC--CcCeEEeeccCCeEEEEEccccc----ceeEEecCceeE--EEE---------------
Confidence 45677764 477777776 77899999999999999986631 111111111100 000
Q ss_pred cccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCce--e----EEeccCccCCCCCcCCCCCcce
Q 017296 134 DCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAER--C----TRLHQNSCGGSPNFSSKGRGMC 207 (374)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~ 207 (374)
.+ .+.+. +++.|+-|+...||++.+.+. . ..+..+ . ++
T Consensus 104 ---------------------A~-sPSg~-~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gH----------t--gy- 147 (343)
T KOG0286|consen 104 ---------------------AY-SPSGN-FVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGH----------T--GY- 147 (343)
T ss_pred ---------------------EE-CCCCC-eEEecCcCceeEEEecccccccccceeeeeecCc----------c--ce-
Confidence 00 11222 466777889999999986521 1 112111 1 11
Q ss_pred eEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEec-CCCceEEEecCCeEEEEEcCCCCC
Q 017296 208 MAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDE-SCNGGISGGADQKIVLYNLDHSTG 286 (374)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~s~s~D~~i~lwd~~~~~~ 286 (374)
++...|..+ + .++++|.|.+..+||+++ ++..+.+.+|...|.++++.| +++.+++|+.|++.+|||++...
T Consensus 148 lScC~f~dD---~--~ilT~SGD~TCalWDie~-g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~- 220 (343)
T KOG0286|consen 148 LSCCRFLDD---N--HILTGSGDMTCALWDIET-GQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ- 220 (343)
T ss_pred eEEEEEcCC---C--ceEecCCCceEEEEEccc-ceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcc-
Confidence 122234432 2 599999999999999987 566888999999999999998 89999999999999999997653
Q ss_pred eEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccC---CceEEEEEeCCCCEEEEEeCCCc
Q 017296 287 SCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHH---ATCNAVSFSSDCKLMASASEDST 363 (374)
Q Consensus 287 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~---~~v~~v~~sp~~~~las~s~D~~ 363 (374)
+. ..+..|...|.+++|.|+|.-+++|+.|+++|+||++..+.+..+. |+ ..|++++||-.|++|+.|-.|.+
T Consensus 221 -c~--qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys-~~~~~~gitSv~FS~SGRlLfagy~d~~ 296 (343)
T KOG0286|consen 221 -CV--QTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYS-HDSIICGITSVAFSKSGRLLFAGYDDFT 296 (343)
T ss_pred -ee--EeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeec-cCcccCCceeEEEcccccEEEeeecCCc
Confidence 33 3345678889999999999999999999999999999998888876 44 47999999999999999999999
Q ss_pred EEEecC
Q 017296 364 VALWEL 369 (374)
Q Consensus 364 v~~W~~ 369 (374)
+.+||.
T Consensus 297 c~vWDt 302 (343)
T KOG0286|consen 297 CNVWDT 302 (343)
T ss_pred eeEeec
Confidence 999986
No 48
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=2.5e-29 Score=212.88 Aligned_cols=287 Identities=20% Similarity=0.342 Sum_probs=201.0
Q ss_pred CCCCCeEEeecCCCceeEEEEeCCC-CEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccc
Q 017296 6 PPPDPVAVLRGHRASVTDVCFHQTK-PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (374)
Q Consensus 6 ~~~~~~~~l~gH~~~V~~l~~~~~~-~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 84 (374)
+..+.+..|.||.++|.|++=+|.. ..++||+.||.|++||+.+..++.++..|... |..+++.- ..++++|+
T Consensus 54 fakPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~--V~Gi~v~~----~~~~tvgd 127 (433)
T KOG0268|consen 54 FAKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGL--VRGICVTQ----TSFFTVGD 127 (433)
T ss_pred hhccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCc--eeeEEecc----cceEEecC
Confidence 3445677889999999999999977 78999999999999999988888888888644 44444432 56899999
Q ss_pred cCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceE
Q 017296 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM 164 (374)
Q Consensus 85 D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (374)
|++||.|.++.. +...+.... . ...++.. ...-+
T Consensus 128 DKtvK~wk~~~~-----p~~tilg~s------------~-----------~~gIdh~------------------~~~~~ 161 (433)
T KOG0268|consen 128 DKTVKQWKIDGP-----PLHTILGKS------------V-----------YLGIDHH------------------RKNSV 161 (433)
T ss_pred CcceeeeeccCC-----cceeeeccc------------c-----------ccccccc------------------ccccc
Confidence 999999998752 111110000 0 0000000 00112
Q ss_pred EEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCc
Q 017296 165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 244 (374)
Q Consensus 165 ~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~ 244 (374)
++++++ .|.|||......+..+.-. + .. +....|.|... ..|+++..|++|.+||++. ..|
T Consensus 162 FaTcGe--~i~IWD~~R~~Pv~smswG-------~----Dt--i~svkfNpvET---sILas~~sDrsIvLyD~R~-~~P 222 (433)
T KOG0268|consen 162 FATCGE--QIDIWDEQRDNPVSSMSWG-------A----DS--ISSVKFNPVET---SILASCASDRSIVLYDLRQ-ASP 222 (433)
T ss_pred ccccCc--eeeecccccCCccceeecC-------C----Cc--eeEEecCCCcc---hheeeeccCCceEEEeccc-CCc
Confidence 344443 6999998877666555321 1 11 11123443321 2467778999999999997 445
Q ss_pred eeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 017296 245 LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRI 324 (374)
Q Consensus 245 ~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~i 324 (374)
++.+. -.-.-+.++|+|..-.|.+|+.|..+..+|++.-... ......|.+.|.++.|||.|+-++||+.|++|||
T Consensus 223 l~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p---~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRI 298 (433)
T KOG0268|consen 223 LKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRP---LNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRI 298 (433)
T ss_pred cceee-eeccccceecCccccceeeccccccceehhhhhhccc---chhhcccceeEEEeccCCCcchhccccccceEEE
Confidence 54432 2334567889997777899999999999998643211 1123346677899999999999999999999999
Q ss_pred EEccCCeEEEEecccC---CceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 325 YNYRKGSALAILKYHH---ATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 325 wd~~~~~~~~~~~~h~---~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
|.+..+..-.++ |. ..|.+|.||-|.++++|||.|+.||+|..
T Consensus 299 f~~~~~~SRdiY--htkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 299 FPVNHGHSRDIY--HTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred eecCCCcchhhh--hHhhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence 999877644332 33 47899999999999999999999999964
No 49
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=5.1e-28 Score=225.41 Aligned_cols=279 Identities=15% Similarity=0.300 Sum_probs=198.6
Q ss_pred CeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEE
Q 017296 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (374)
Q Consensus 10 ~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vr 89 (374)
++..|.+|.++|+.|+|+|+..+++||++|.+|+||+..+.+++.++.+|. ..|..+.|.+ ..-+++|+|.|.|||
T Consensus 43 li~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHl--DYVRt~~FHh--eyPWIlSASDDQTIr 118 (1202)
T KOG0292|consen 43 LIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHL--DYVRTVFFHH--EYPWILSASDDQTIR 118 (1202)
T ss_pred HHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhcccc--ceeEEeeccC--CCceEEEccCCCeEE
Confidence 566788999999999999999999999999999999999999999999986 3477777776 456899999999999
Q ss_pred EEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEccc
Q 017296 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE 169 (374)
Q Consensus 90 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (374)
+|++++++++ .+-+..-|+. ++.+ |.+ ...++++++
T Consensus 119 IWNwqsr~~i-----avltGHnHYV-McAq------------------------------------Fhp--tEDlIVSaS 154 (1202)
T KOG0292|consen 119 IWNWQSRKCI-----AVLTGHNHYV-MCAQ------------------------------------FHP--TEDLIVSAS 154 (1202)
T ss_pred EEeccCCceE-----EEEecCceEE-Eeec------------------------------------cCC--ccceEEEec
Confidence 9999987542 2222211110 0000 001 123578888
Q ss_pred CCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeee
Q 017296 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK 249 (374)
Q Consensus 170 ~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~ 249 (374)
-|.+|||||+ .-+... ....+ +. . -...|.. +..-++--. ....-+.+.
T Consensus 155 LDQTVRVWDi------sGLRkk---------~~~pg---~~----e-------~~~~~~~-~~~dLfg~~-DaVVK~VLE 203 (1202)
T KOG0292|consen 155 LDQTVRVWDI------SGLRKK---------NKAPG---SL----E-------DQMRGQQ-GNSDLFGQT-DAVVKHVLE 203 (1202)
T ss_pred ccceEEEEee------cchhcc---------CCCCC---Cc----h-------hhhhccc-cchhhcCCc-Ceeeeeeec
Confidence 8999999984 111100 00000 00 0 0011111 111122000 001123578
Q ss_pred cCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccC
Q 017296 250 VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRK 329 (374)
Q Consensus 250 ~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~ 329 (374)
||...|+-.+|+|....++||+.|..|++|.+.... .+. ......|...|+++-|+|...+|+|.|+|++|||||+..
T Consensus 204 GHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK-aWE-vDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~k 281 (1202)
T KOG0292|consen 204 GHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK-AWE-VDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTK 281 (1202)
T ss_pred ccccccceEEecCCcceEEecCCcceeeEEEecccc-cee-ehhhhcccCCcceEEecCccceeEecCCCccEEEEeccc
Confidence 999999999999999999999999999999885321 111 123456777899999999999999999999999999998
Q ss_pred CeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 330 GSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 330 ~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
-..+++++...+.-+.++-+|...++|. +.|+-+-++.++
T Consensus 282 Rt~v~tfrrendRFW~laahP~lNLfAA-gHDsGm~VFkle 321 (1202)
T KOG0292|consen 282 RTSVQTFRRENDRFWILAAHPELNLFAA-GHDSGMIVFKLE 321 (1202)
T ss_pred ccceeeeeccCCeEEEEEecCCcceeee-ecCCceEEEEEc
Confidence 8899999866778999999999887775 557777788875
No 50
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=3.7e-27 Score=195.40 Aligned_cols=278 Identities=18% Similarity=0.256 Sum_probs=197.8
Q ss_pred CeEEeecCCCceeEEEEeC-CCCEEEEecCCCcEEEEeCcc-cceeeeeeeeeceeeeEEeccCCccccceeeeccccCe
Q 017296 10 PVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQ-HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (374)
Q Consensus 10 ~~~~l~gH~~~V~~l~~~~-~~~~l~s~s~D~~v~vWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~ 87 (374)
-..+-....+.|.+|+||| ...+|+.||.|++||+|+++. |+..... .+.....+.+++|+. +++.+++|+.|++
T Consensus 19 d~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka-~~~~~~PvL~v~Wsd--dgskVf~g~~Dk~ 95 (347)
T KOG0647|consen 19 DYEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKA-QQSHDGPVLDVCWSD--DGSKVFSGGCDKQ 95 (347)
T ss_pred ceecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchh-hhccCCCeEEEEEcc--CCceEEeeccCCc
Confidence 3444445689999999999 556677999999999999876 3432211 122334588888876 6789999999999
Q ss_pred EEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEc
Q 017296 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (374)
Q Consensus 88 vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (374)
+++||+.+++.. .+..++.....+. .+.. ..-.++++
T Consensus 96 ~k~wDL~S~Q~~-----~v~~Hd~pvkt~~-------------------wv~~-------------------~~~~cl~T 132 (347)
T KOG0647|consen 96 AKLWDLASGQVS-----QVAAHDAPVKTCH-------------------WVPG-------------------MNYQCLVT 132 (347)
T ss_pred eEEEEccCCCee-----eeeecccceeEEE-------------------EecC-------------------CCcceeEe
Confidence 999999998431 1212211111110 0000 00125789
Q ss_pred ccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceee
Q 017296 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA 247 (374)
Q Consensus 168 ~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~ 247 (374)
|++|++||+||++....+.++.-+ .+.+++.+. ...++.+..+..|.+|+|+++.. .
T Consensus 133 GSWDKTlKfWD~R~~~pv~t~~LP-----------eRvYa~Dv~---------~pm~vVata~r~i~vynL~n~~t---e 189 (347)
T KOG0647|consen 133 GSWDKTLKFWDTRSSNPVATLQLP-----------ERVYAADVL---------YPMAVVATAERHIAVYNLENPPT---E 189 (347)
T ss_pred cccccceeecccCCCCeeeeeecc-----------ceeeehhcc---------CceeEEEecCCcEEEEEcCCCcc---h
Confidence 999999999999988877666432 234443331 12467788899999999976532 2
Q ss_pred eecCc----cCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCC---------CCeEEEEECCCCCEEE
Q 017296 248 MKVHL----EPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLER---------PGISGTSIRPDSKIAA 314 (374)
Q Consensus 248 ~~~h~----~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~---------~~v~~~~~sp~~~~l~ 314 (374)
++.+. ..++|+++..+....+.||..|.+.+..++....+.- ..++.|+ +.|.+++|+|.-..|+
T Consensus 190 ~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~n--FtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlv 267 (347)
T KOG0647|consen 190 FKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDN--FTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLV 267 (347)
T ss_pred hhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCc--eeEEEeccCCCCCCceEEecceEeecccceEE
Confidence 33333 3588999877777789999999999999986422111 1122232 3477899999999999
Q ss_pred EEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEE
Q 017296 315 TAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASA 358 (374)
Q Consensus 315 s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~ 358 (374)
++|.||+..+||-+....+++.+.|..+|.+..|+.+|.++|.+
T Consensus 268 TaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 268 TAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred EecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 99999999999998777888888999999999999999999876
No 51
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=4e-27 Score=214.43 Aligned_cols=281 Identities=18% Similarity=0.308 Sum_probs=202.1
Q ss_pred CCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeee--eeeeeceeeeEE--eccCCccccceeeecc
Q 017296 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSS--SWVHSAAHGIVS--VATGPSIGLNKVISQG 83 (374)
Q Consensus 8 ~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~l~s~~ 83 (374)
.+.-..++||.+.|..+++. ++..++++|.|+++++|+-...+.+.+ +.+|. +.+. +++... +.-++++|+
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~-~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~---g~i~~~i~y~e~-~~~~l~~g~ 78 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVT-DGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPK---GFIANSICYAES-DKGRLVVGG 78 (745)
T ss_pred ceeEEEeccCccchheeEec-CCeEEeecCCCCceeeeeccCcccccceecccCc---ceeeccceeccc-cCcceEeec
Confidence 46678999999999999875 456899999999999999866554432 33332 2222 333332 334689999
Q ss_pred ccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCce
Q 017296 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY 163 (374)
Q Consensus 84 ~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (374)
.|.++.+|....+. |...++.+....|.++.. ...
T Consensus 79 ~D~~i~v~~~~~~~----P~~~LkgH~snVC~ls~~-----------------------------------------~~~ 113 (745)
T KOG0301|consen 79 MDTTIIVFKLSQAE----PLYTLKGHKSNVCSLSIG-----------------------------------------EDG 113 (745)
T ss_pred ccceEEEEecCCCC----chhhhhccccceeeeecC-----------------------------------------CcC
Confidence 99999999997763 333344443344433211 111
Q ss_pred EEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCC
Q 017296 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243 (374)
Q Consensus 164 ~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~ 243 (374)
.+++|++|.++++|-... +.-.++.+ ... +.++. ..+ ...+++||.|.+||+|.- +.
T Consensus 114 ~~iSgSWD~TakvW~~~~--l~~~l~gH--------~as----VWAv~-~l~-----e~~~vTgsaDKtIklWk~---~~ 170 (745)
T KOG0301|consen 114 TLISGSWDSTAKVWRIGE--LVYSLQGH--------TAS----VWAVA-SLP-----ENTYVTGSADKTIKLWKG---GT 170 (745)
T ss_pred ceEecccccceEEecchh--hhcccCCc--------chh----eeeee-ecC-----CCcEEeccCcceeeeccC---Cc
Confidence 368999999999996543 22223222 111 11221 111 125899999999999974 55
Q ss_pred ceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEE
Q 017296 244 PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVR 323 (374)
Q Consensus 244 ~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~ 323 (374)
.+.++.+|++-|+.+++-++. .++|++.||.|++|++++ .+. .++..|+..+++++..++++.|+|+++|++++
T Consensus 171 ~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~g---e~l--~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlr 244 (745)
T KOG0301|consen 171 LLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDG---EVL--LEMHGHTNFVYSISMALSDGLIVSTGEDRTLR 244 (745)
T ss_pred hhhhhccchhheeeeEEecCC-CeEeecCCceEEEEeccC---cee--eeeeccceEEEEEEecCCCCeEEEecCCceEE
Confidence 688999999999999997653 589999999999999953 233 45677888899999888888999999999999
Q ss_pred EEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 324 IYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 324 iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
||+.. ++.+.+.-..-.||++.+-++|. |++|+.||.||+|...
T Consensus 245 iW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 245 IWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred EeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence 99875 77788874445999999988876 5667789999999765
No 52
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.2e-27 Score=190.28 Aligned_cols=239 Identities=21% Similarity=0.298 Sum_probs=177.7
Q ss_pred eeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCce
Q 017296 64 GIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGET 143 (374)
Q Consensus 64 ~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (374)
.+.++-+.. ++++++++|.|++||+|++..|.+ +++...|...+....
T Consensus 19 aV~avryN~--dGnY~ltcGsdrtvrLWNp~rg~l-------iktYsghG~EVlD~~----------------------- 66 (307)
T KOG0316|consen 19 AVRAVRYNV--DGNYCLTCGSDRTVRLWNPLRGAL-------IKTYSGHGHEVLDAA----------------------- 66 (307)
T ss_pred ceEEEEEcc--CCCEEEEcCCCceEEeecccccce-------eeeecCCCceeeecc-----------------------
Confidence 466666665 789999999999999999987743 344443332211000
Q ss_pred eecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceE
Q 017296 144 VDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVN 223 (374)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (374)
...++. -+++++.|+.+.+||+++|+.++++..+.. +.. + ..|.- ....
T Consensus 67 ------------~s~Dns--kf~s~GgDk~v~vwDV~TGkv~Rr~rgH~a--------qVN----t-V~fNe----esSV 115 (307)
T KOG0316|consen 67 ------------LSSDNS--KFASCGGDKAVQVWDVNTGKVDRRFRGHLA--------QVN----T-VRFNE----ESSV 115 (307)
T ss_pred ------------cccccc--ccccCCCCceEEEEEcccCeeeeecccccc--------eee----E-EEecC----cceE
Confidence 001111 246777899999999999999998865421 111 1 12321 2235
Q ss_pred EEEEecCCcEEEEeccCCC-CceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeE
Q 017296 224 VLAGYEDGSILVWDIRNPG-IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGIS 302 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~ 302 (374)
+++|+-|.+|++||.|+.. .|++.+....+.|.++.+... -+++||.||++|.||++.++ . ...+-...|+
T Consensus 116 v~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~h--eIvaGS~DGtvRtydiR~G~--l----~sDy~g~pit 187 (307)
T KOG0316|consen 116 VASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEH--EIVAGSVDGTVRTYDIRKGT--L----SSDYFGHPIT 187 (307)
T ss_pred EEeccccceeEEEEcccCCCCccchhhhhcCceeEEEeccc--EEEeeccCCcEEEEEeecce--e----ehhhcCCcce
Confidence 8899999999999998653 578888888889999888653 46899999999999997542 1 1223346799
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEE--EeCCCCEEEEEeCCCcEEEecCCCCC
Q 017296 303 GTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVS--FSSDCKLMASASEDSTVALWELYPPH 373 (374)
Q Consensus 303 ~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~--~sp~~~~las~s~D~~v~~W~~~~~~ 373 (374)
+++|+||++..+.++.|+++++.|-.+|+.++.+++|.+.-..+. ++.....+++||+||.|.+||+.+.+
T Consensus 188 ~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 188 SVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDET 260 (307)
T ss_pred eEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccce
Confidence 999999999999999999999999999999999999997665554 45566799999999999999997643
No 53
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.96 E-value=1.9e-27 Score=201.22 Aligned_cols=246 Identities=22% Similarity=0.378 Sum_probs=185.9
Q ss_pred eeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcc
Q 017296 56 SWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDC 135 (374)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (374)
+.+|.. -|.++++.| ...+|+||+.|+++++||+.+|.+.. .+ .+|... +
T Consensus 147 i~gHlg--WVr~vavdP--~n~wf~tgs~DrtikIwDlatg~Lkl----tl---tGhi~~-------------------v 196 (460)
T KOG0285|consen 147 ISGHLG--WVRSVAVDP--GNEWFATGSADRTIKIWDLATGQLKL----TL---TGHIET-------------------V 196 (460)
T ss_pred hhhccc--eEEEEeeCC--CceeEEecCCCceeEEEEcccCeEEE----ee---cchhhe-------------------e
Confidence 445653 377888887 35789999999999999999985421 11 011100 0
Q ss_pred cccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeec
Q 017296 136 YEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLP 215 (374)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (374)
+++ .......++.+++.|+.|+-||++..+.++..+++. ...+|..+ .|
T Consensus 197 -----r~v-------------avS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHl----------S~V~~L~l---hP 245 (460)
T KOG0285|consen 197 -----RGV-------------AVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHL----------SGVYCLDL---HP 245 (460)
T ss_pred -----eee-------------eecccCceEEEecCCCeeEEEechhhhhHHHhcccc----------ceeEEEec---cc
Confidence 000 001123355677789999999999999888776542 12233322 12
Q ss_pred CCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeee
Q 017296 216 SKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEIN 295 (374)
Q Consensus 216 ~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~ 295 (374)
....+++|+.|.++|+||+|+ ...+..+.||..+|..+.+.+...++++||-|++|+|||+.... -+ ..+.
T Consensus 246 ----Tldvl~t~grDst~RvWDiRt-r~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agk--t~--~tlt 316 (460)
T KOG0285|consen 246 ----TLDVLVTGGRDSTIRVWDIRT-RASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGK--TM--ITLT 316 (460)
T ss_pred ----cceeEEecCCcceEEEeeecc-cceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCc--ee--Eeee
Confidence 223689999999999999997 56688899999999999998877889999999999999997432 22 2344
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCCC
Q 017296 296 LERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPPH 373 (374)
Q Consensus 296 ~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~~ 373 (374)
.|...+++++.+|....+||++.| .|+=|++-.+++++-+.+|..-|++++...|| ++++|+..|.+.+||+..+|
T Consensus 317 ~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~ 392 (460)
T KOG0285|consen 317 HHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGH 392 (460)
T ss_pred cccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCc
Confidence 566789999999999999999987 67889999999999999999999999998775 78899999999999997665
No 54
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=1.3e-26 Score=192.84 Aligned_cols=272 Identities=21% Similarity=0.306 Sum_probs=196.2
Q ss_pred CCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCC
Q 017296 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG 96 (374)
Q Consensus 17 H~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~ 96 (374)
.++.|..|.|+|....|+.+|.||+++++|.........+. | .+.+..++|.+ ...+++|+.||+||+.|+.++
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~--~~plL~c~F~d---~~~~~~G~~dg~vr~~Dln~~ 85 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-H--GAPLLDCAFAD---ESTIVTGGLDGQVRRYDLNTG 85 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-c--CCceeeeeccC---CceEEEeccCceEEEEEecCC
Confidence 47899999999998889989999999999987664433332 3 35588888875 478999999999999999887
Q ss_pred CCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEE
Q 017296 97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEI 176 (374)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v 176 (374)
... .+.++.. ...|..... . .-.+++|++|++|++
T Consensus 86 ~~~-----~igth~~--------------------~i~ci~~~~------------------~--~~~vIsgsWD~~ik~ 120 (323)
T KOG1036|consen 86 NED-----QIGTHDE--------------------GIRCIEYSY------------------E--VGCVISGSWDKTIKF 120 (323)
T ss_pred cce-----eeccCCC--------------------ceEEEEeec------------------c--CCeEEEcccCccEEE
Confidence 421 1111110 011111100 0 113678999999999
Q ss_pred EecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeee-ecCccCe
Q 017296 177 WDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM-KVHLEPV 255 (374)
Q Consensus 177 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~-~~h~~~v 255 (374)
||.+.......+.+. ...+|+.+. ...|+.|+.|..|.+||+|+...+.+.- ..-.-.+
T Consensus 121 wD~R~~~~~~~~d~~-----------kkVy~~~v~---------g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqt 180 (323)
T KOG1036|consen 121 WDPRNKVVVGTFDQG-----------KKVYCMDVS---------GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQT 180 (323)
T ss_pred EeccccccccccccC-----------ceEEEEecc---------CCEEEEeecCceEEEEEcccccchhhhccccceeEE
Confidence 999874433333221 133444331 2368899999999999999765544221 1234478
Q ss_pred EEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCC---------CCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 017296 256 LCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLER---------PGISGTSIRPDSKIAATAGWDRRVRIYN 326 (374)
Q Consensus 256 ~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~---------~~v~~~~~sp~~~~l~s~~~dg~v~iwd 326 (374)
+|+++-|++.+++.+|-||+|.+-.++.+...+.....++.|+ ..|.+++|||--+.+|+||.||.|-+||
T Consensus 181 R~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd 260 (323)
T KOG1036|consen 181 RCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWD 260 (323)
T ss_pred EEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEcc
Confidence 8999988888899999999999988876632222222333332 3488999999999999999999999999
Q ss_pred ccCCeEEEEecccCCceEEEEEeCCCCEEEEEe
Q 017296 327 YRKGSALAILKYHHATCNAVSFSSDCKLMASAS 359 (374)
Q Consensus 327 ~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s 359 (374)
+...+.+..+..-+..|.+++|+-||..||.|+
T Consensus 261 ~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 261 LFNRKRLKQLAKYETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred CcchhhhhhccCCCCceEEEEeccCCCeEEEEe
Confidence 999999988877778899999999999999886
No 55
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.3e-25 Score=185.27 Aligned_cols=291 Identities=18% Similarity=0.270 Sum_probs=203.7
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccc--cC
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR--DG 86 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~--D~ 86 (374)
+|...|+.-...|++|.|+.+|.+|+++++|.+++++|..++..+.++..+ ..++-.+.|... .+.++.++. |.
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~sk--kyG~~~~~Fth~--~~~~i~sStk~d~ 80 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSK--KYGVDLACFTHH--SNTVIHSSTKEDD 80 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecc--cccccEEEEecC--CceEEEccCCCCC
Confidence 345567777899999999999999999999999999999999988876543 345666666542 355665554 99
Q ss_pred eEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEE
Q 017296 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (374)
Q Consensus 87 ~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (374)
+||.-++..+++ ++...+|...+..+ . +.+.+ -.++
T Consensus 81 tIryLsl~dNky-------lRYF~GH~~~V~sL-----------------~------------------~sP~~--d~Fl 116 (311)
T KOG1446|consen 81 TIRYLSLHDNKY-------LRYFPGHKKRVNSL-----------------S------------------VSPKD--DTFL 116 (311)
T ss_pred ceEEEEeecCce-------EEEcCCCCceEEEE-----------------E------------------ecCCC--CeEE
Confidence 999999987753 23333322110000 0 00111 2467
Q ss_pred cccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCC-CCce
Q 017296 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP-GIPL 245 (374)
Q Consensus 167 ~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~-~~~~ 245 (374)
+++.|++|++||++..++...+... .+..+ +|-| .| ..++++...+.|++||+|.. +-|.
T Consensus 117 S~S~D~tvrLWDlR~~~cqg~l~~~-----------~~pi~----AfDp---~G-LifA~~~~~~~IkLyD~Rs~dkgPF 177 (311)
T KOG1446|consen 117 SSSLDKTVRLWDLRVKKCQGLLNLS-----------GRPIA----AFDP---EG-LIFALANGSELIKLYDLRSFDKGPF 177 (311)
T ss_pred ecccCCeEEeeEecCCCCceEEecC-----------CCcce----eECC---CC-cEEEEecCCCeEEEEEecccCCCCc
Confidence 8889999999999987764444311 11111 1211 22 24666777779999999875 3355
Q ss_pred eeeec---CccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeE
Q 017296 246 TAMKV---HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRV 322 (374)
Q Consensus 246 ~~~~~---h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v 322 (374)
.++.. .....+.|.|+++|..++.+...+.+.+.|.=.++..+.+....+.... -.+.+|+||+++|++|+.||+|
T Consensus 178 ~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~-~~~a~ftPds~Fvl~gs~dg~i 256 (311)
T KOG1446|consen 178 TTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNL-PLSATFTPDSKFVLSGSDDGTI 256 (311)
T ss_pred eeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCc-ceeEEECCCCcEEEEecCCCcE
Confidence 55543 3567889999999999999999999999887544433333222222211 2578999999999999999999
Q ss_pred EEEEccCCeEEEEecc-cCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 323 RIYNYRKGSALAILKY-HHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 323 ~iwd~~~~~~~~~~~~-h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
.+|++++++....+++ +...+.++.|+|.-..+||+ |..+-+|=.
T Consensus 257 ~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p 302 (311)
T KOG1446|consen 257 HVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLP 302 (311)
T ss_pred EEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEec
Confidence 9999999999999998 68899999999976566554 688888844
No 56
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.95 E-value=6.3e-28 Score=207.24 Aligned_cols=247 Identities=23% Similarity=0.319 Sum_probs=182.3
Q ss_pred EeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEe
Q 017296 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (374)
Q Consensus 13 ~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd 92 (374)
.+..|.++|+++.|+.+|.+++||+.||.||+|+..- ..+..+..|. ...|..++|++ ..+.++|++.|++|+|||
T Consensus 133 ilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh-~eaIRdlafSp--nDskF~t~SdDg~ikiWd 208 (464)
T KOG0284|consen 133 ILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM-NNVKIIQAHH-AEAIRDLAFSP--NDSKFLTCSDDGTIKIWD 208 (464)
T ss_pred HhhhhcccceeEEEccCCCEEEEcCCCceEEecccch-hhhHHhhHhh-hhhhheeccCC--CCceeEEecCCCeEEEEe
Confidence 4668999999999999999999999999999999753 3455555553 24689999998 457999999999999999
Q ss_pred cCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCC
Q 017296 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS 172 (374)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 172 (374)
....+... .+ .+|..-+ -+. +..+. +=++++|+.|+
T Consensus 209 f~~~kee~----vL---~GHgwdV-----------------ksv------------------dWHP~--kgLiasgskDn 244 (464)
T KOG0284|consen 209 FRMPKEER----VL---RGHGWDV-----------------KSV------------------DWHPT--KGLIASGSKDN 244 (464)
T ss_pred ccCCchhh----ee---ccCCCCc-----------------cee------------------ccCCc--cceeEEccCCc
Confidence 87653211 11 1111100 000 11111 22577888899
Q ss_pred eEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCc
Q 017296 173 EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL 252 (374)
Q Consensus 173 ~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~ 252 (374)
.|++||.+++.++.+++.+. ..++.+ .|.++ ...|+++|.|..+++||++. -..+..+++|.
T Consensus 245 lVKlWDprSg~cl~tlh~HK------------ntVl~~-~f~~n----~N~Llt~skD~~~kv~DiR~-mkEl~~~r~Hk 306 (464)
T KOG0284|consen 245 LVKLWDPRSGSCLATLHGHK------------NTVLAV-KFNPN----GNWLLTGSKDQSCKVFDIRT-MKELFTYRGHK 306 (464)
T ss_pred eeEeecCCCcchhhhhhhcc------------ceEEEE-EEcCC----CCeeEEccCCceEEEEehhH-hHHHHHhhcch
Confidence 99999999999998887541 122222 34443 24799999999999999984 34577789999
Q ss_pred cCeEEEEEecCC-CceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcc
Q 017296 253 EPVLCLSIDESC-NGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYR 328 (374)
Q Consensus 253 ~~v~~~~~~~~~-~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~ 328 (374)
..++++.++|-. ..|.+|+.||.|..|.+...... .....+|...|++++++|-|.+|++|+.|+++++|...
T Consensus 307 kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~---~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 307 KDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPL---GEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred hhheeeccccccccceeeccCCCceEEEeccccccc---cCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 999999998743 34678999999999998632211 11123567789999999999999999999999999663
No 57
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.2e-26 Score=193.73 Aligned_cols=327 Identities=18% Similarity=0.245 Sum_probs=219.5
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
+++..|.||++.|..++-.....++.|+|.|.+.++|.+++|+|+..+.+|.. .+.++.|.++ +..+++++.|++-
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~G--SVNsikfh~s--~~L~lTaSGD~ta 214 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTG--SVNSIKFHNS--GLLLLTASGDETA 214 (481)
T ss_pred eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeeccccc--ceeeEEeccc--cceEEEccCCcch
Confidence 45667889999999999987778999999999999999999999999999974 4778888873 5688999999999
Q ss_pred EEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCC---CCCCCC----CCCCCCC
Q 017296 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDS---LCDSKD----DVPAEGP 161 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~ 161 (374)
.+|...-+=...++... ..|...-....... .....+.....-+..+.+.. ..+... +.-..
T Consensus 215 HIW~~av~~~vP~~~a~----~~hSsEeE~e~sDe-----~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~g-- 283 (481)
T KOG0300|consen 215 HIWKAAVNWEVPSNNAP----SDHSSEEEEEHSDE-----HNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAG-- 283 (481)
T ss_pred HHHHHhhcCcCCCCCCC----CCCCchhhhhcccc-----cccccccccccCCceeeeeeeeeeccccceEehhhhcC--
Confidence 99995322000000000 00000000000000 00000000000000111111 111110 01011
Q ss_pred ceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCC
Q 017296 162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 241 (374)
Q Consensus 162 ~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~ 241 (374)
...++++++|.+..+||+++++.+..+.++... -..|.+ .+...++++.+.|-+.++||++..
T Consensus 284 g~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~E---------LtHcst--------HptQrLVvTsSrDtTFRLWDFRea 346 (481)
T KOG0300|consen 284 GQQMVTASWDRTANLWDVETGEVVNILTGHDSE---------LTHCST--------HPTQRLVVTSSRDTTFRLWDFREA 346 (481)
T ss_pred cceeeeeeccccceeeeeccCceeccccCcchh---------cccccc--------CCcceEEEEeccCceeEeccchhh
Confidence 224677889999999999999987777643210 111211 122236788999999999999965
Q ss_pred CCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCe
Q 017296 242 GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRR 321 (374)
Q Consensus 242 ~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~ 321 (374)
...+..|+||++.|+++.|..+. .+++||.|.+|++||++...... ..+. ..+.+..++++..+++||.-..++.
T Consensus 347 I~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRspl---ATIR-tdS~~NRvavs~g~~iIAiPhDNRq 421 (481)
T KOG0300|consen 347 IQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPL---ATIR-TDSPANRVAVSKGHPIIAIPHDNRQ 421 (481)
T ss_pred cceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcc---eeee-cCCccceeEeecCCceEEeccCCce
Confidence 55677899999999999997654 47999999999999997542111 1121 2356888999999999999999999
Q ss_pred EEEEEccCCeEEEEe-----cccCCceEEEEEeCCCC--EEEEEeCCCcEEEecCCCCC
Q 017296 322 VRIYNYRKGSALAIL-----KYHHATCNAVSFSSDCK--LMASASEDSTVALWELYPPH 373 (374)
Q Consensus 322 v~iwd~~~~~~~~~~-----~~h~~~v~~v~~sp~~~--~las~s~D~~v~~W~~~~~~ 373 (374)
|++||+. |..+..+ ++|..-|.|.+|.-+.. -|+|++-|..+.=|++..|-
T Consensus 422 vRlfDln-G~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 422 VRLFDLN-GNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred EEEEecC-CCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecccC
Confidence 9999995 5555444 47999999999986543 58999999999999998774
No 58
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=2.4e-26 Score=215.94 Aligned_cols=256 Identities=23% Similarity=0.342 Sum_probs=187.4
Q ss_pred CCCeEE-eecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccC
Q 017296 8 PDPVAV-LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (374)
Q Consensus 8 ~~~~~~-l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ 86 (374)
...+.+ |.||.+.|.+++|..-+.+|++||.|.+++|||..+|++...+.+|... +.++... ..++++|+.|.
T Consensus 238 ~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~st--v~~~~~~----~~~~~sgs~D~ 311 (537)
T KOG0274|consen 238 GYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSS--VRCLTID----PFLLVSGSRDN 311 (537)
T ss_pred ceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCce--EEEEEcc----CceEeeccCCc
Confidence 345556 9999999999999877889999999999999999999999999988654 4444443 35788999999
Q ss_pred eEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEE
Q 017296 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (374)
Q Consensus 87 ~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (374)
+||+|+++++.+.. ...+|...+. +... . .-+++
T Consensus 312 tVkVW~v~n~~~l~-------l~~~h~~~V~-----------------~v~~--------------------~--~~~lv 345 (537)
T KOG0274|consen 312 TVKVWDVTNGACLN-------LLRGHTGPVN-----------------CVQL--------------------D--EPLLV 345 (537)
T ss_pred eEEEEeccCcceEE-------EeccccccEE-----------------EEEe--------------------c--CCEEE
Confidence 99999999875321 1111110000 0000 0 22578
Q ss_pred cccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCcee
Q 017296 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (374)
Q Consensus 167 ~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~ 246 (374)
+|+.|++|++||+++++++..+..+. .+..+..+ + +...+++|+-|++|++||++....++.
T Consensus 346 sgs~d~~v~VW~~~~~~cl~sl~gH~----------~~V~sl~~-----~---~~~~~~Sgs~D~~IkvWdl~~~~~c~~ 407 (537)
T KOG0274|consen 346 SGSYDGTVKVWDPRTGKCLKSLSGHT----------GRVYSLIV-----D---SENRLLSGSLDTTIKVWDLRTKRKCIH 407 (537)
T ss_pred EEecCceEEEEEhhhceeeeeecCCc----------ceEEEEEe-----c---CcceEEeeeeccceEeecCCchhhhhh
Confidence 89999999999999999998887532 12222211 1 113689999999999999987425788
Q ss_pred eeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 017296 247 AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYN 326 (374)
Q Consensus 247 ~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd 326 (374)
++++|..-+..+.+.. ..+++++.|++|++||.+.......+... +...+..+++. ...+++++.||++++||
T Consensus 408 tl~~h~~~v~~l~~~~--~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~---~~~~v~~l~~~--~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 408 TLQGHTSLVSSLLLRD--NFLVSSSADGTIKLWDAEEGECLRTLEGR---HVGGVSALALG--KEEILCSSDDGSVKLWD 480 (537)
T ss_pred hhcCCccccccccccc--ceeEeccccccEEEeecccCceeeeeccC---CcccEEEeecC--cceEEEEecCCeeEEEe
Confidence 8999999997777654 45799999999999999765443332211 44567777776 45788899999999999
Q ss_pred ccCCeEEEEecccC
Q 017296 327 YRKGSALAILKYHH 340 (374)
Q Consensus 327 ~~~~~~~~~~~~h~ 340 (374)
+++++....+-.+.
T Consensus 481 l~~~~~~~~l~~~~ 494 (537)
T KOG0274|consen 481 LRSGTLIRTLLSTD 494 (537)
T ss_pred cccCchhhhhhhcc
Confidence 99998877664444
No 59
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=8.2e-26 Score=199.55 Aligned_cols=313 Identities=15% Similarity=0.170 Sum_probs=203.4
Q ss_pred CCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCccc----ceeeeeeeeeceeeeEEeccCCccccceeeecc
Q 017296 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH----RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG 83 (374)
Q Consensus 8 ~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 83 (374)
......|.+|+..|.++++.|.|..|+|||.|.+|++||+..- +....+. ....|.+.++.+++. +++++..+
T Consensus 157 ~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~-P~E~h~i~sl~ys~T--g~~iLvvs 233 (641)
T KOG0772|consen 157 GSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQ-PCETHQINSLQYSVT--GDQILVVS 233 (641)
T ss_pred ccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccC-cccccccceeeecCC--CCeEEEEe
Confidence 3456689999999999999999999999999999999998532 1122222 223467888889884 45666555
Q ss_pred ccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCce
Q 017296 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY 163 (374)
Q Consensus 84 ~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (374)
...+.+|+|=..-.. ........++..+...+.+.+. ..|.++ .+.. +-
T Consensus 234 g~aqakl~DRdG~~~-----~e~~KGDQYI~Dm~nTKGHia~-------lt~g~w------------------hP~~-k~ 282 (641)
T KOG0772|consen 234 GSAQAKLLDRDGFEI-----VEFSKGDQYIRDMYNTKGHIAE-------LTCGCW------------------HPDN-KE 282 (641)
T ss_pred cCcceeEEccCCcee-----eeeeccchhhhhhhccCCceee-------eecccc------------------ccCc-cc
Confidence 556788888542110 0000111111111111111110 011111 1222 33
Q ss_pred EEEcccCCCeEEEEecCCCc-eeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCC
Q 017296 164 MAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 242 (374)
Q Consensus 164 ~~~~~~~d~~i~vWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~ 242 (374)
.+++++.|+++|+||+...+ ++..+......+ .+.. .....+.++ ...+++|+.||+|.+||.+...
T Consensus 283 ~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g-------~Rv~-~tsC~~nrd----g~~iAagc~DGSIQ~W~~~~~~ 350 (641)
T KOG0772|consen 283 EFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGG-------KRVP-VTSCAWNRD----GKLIAAGCLDGSIQIWDKGSRT 350 (641)
T ss_pred ceEEecCCCcEEEEecCCchhheeEEeeccCCC-------cccC-ceeeecCCC----cchhhhcccCCceeeeecCCcc
Confidence 45678889999999998765 233332111000 0111 111234433 2358899999999999985422
Q ss_pred --CceeeeecCcc--CeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeC
Q 017296 243 --IPLTAMKVHLE--PVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGW 318 (374)
Q Consensus 243 --~~~~~~~~h~~--~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~ 318 (374)
..+..-+.|.. .|+|+.|++++++|++=|.|+++++||++... .++....--.....-+.++|||+.++|++|..
T Consensus 351 v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k-kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 351 VRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK-KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTS 429 (641)
T ss_pred cccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc-cchhhhcCCCccCCCCccccCCCceEEEeccc
Confidence 12233356776 89999999999999999999999999997432 22211110011123457899999999998874
Q ss_pred ------CCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEe
Q 017296 319 ------DRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALW 367 (374)
Q Consensus 319 ------dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W 367 (374)
.|++.+||..+.+..+.+.-....|..+.|+|.=..|+.++.||+++++
T Consensus 430 ~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 430 APNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred ccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEE
Confidence 5789999999988888888778899999999987788888899999985
No 60
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.9e-25 Score=201.39 Aligned_cols=246 Identities=21% Similarity=0.285 Sum_probs=192.1
Q ss_pred eEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEE
Q 017296 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC 90 (374)
Q Consensus 11 ~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrv 90 (374)
+..++--.-||++..|-+--+++++||+|..|+|+|.++++.+..+..|. ..+.+++..|. .-.++|+|.|.+||+
T Consensus 48 VksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~--DyIR~iavHPt--~P~vLtsSDDm~iKl 123 (794)
T KOG0276|consen 48 VKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHS--DYIRSIAVHPT--LPYVLTSSDDMTIKL 123 (794)
T ss_pred eeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccc--cceeeeeecCC--CCeEEecCCccEEEE
Confidence 34445557788889998878899999999999999999999999987775 45888888874 358999999999999
Q ss_pred EecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccC
Q 017296 91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ 170 (374)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (374)
||.+.+ +.|..
T Consensus 124 W~we~~---------------wa~~q------------------------------------------------------ 134 (794)
T KOG0276|consen 124 WDWENE---------------WACEQ------------------------------------------------------ 134 (794)
T ss_pred eeccCc---------------eeeee------------------------------------------------------
Confidence 999753 00100
Q ss_pred CCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeec
Q 017296 171 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV 250 (374)
Q Consensus 171 d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~ 250 (374)
.+.+ ++ .++|.+ .|.|. +...++++|-|++|++|.+.++ .+..++++
T Consensus 135 ----------------tfeG--------H~----HyVMqv-~fnPk---D~ntFaS~sLDrTVKVWslgs~-~~nfTl~g 181 (794)
T KOG0276|consen 135 ----------------TFEG--------HE----HYVMQV-AFNPK---DPNTFASASLDRTVKVWSLGSP-HPNFTLEG 181 (794)
T ss_pred ----------------EEcC--------cc----eEEEEE-EecCC---CccceeeeeccccEEEEEcCCC-CCceeeec
Confidence 0000 00 011111 13332 2225899999999999999874 46778999
Q ss_pred CccCeEEEEEe--cCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcc
Q 017296 251 HLEPVLCLSID--ESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYR 328 (374)
Q Consensus 251 h~~~v~~~~~~--~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~ 328 (374)
|...|+|+.+- ++.++++||+.|.+|++||..+.++. ..+..|...|+.++|+|.-.+|+||++||+||||+..
T Consensus 182 HekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV----~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~ 257 (794)
T KOG0276|consen 182 HEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCV----QTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSK 257 (794)
T ss_pred cccCcceEEeccCCCcceEEecCCCceEEEeecchHHHH----HHhhcccccceEEEecCCCcEEEEecCCccEEEecCc
Confidence 99999999993 45578999999999999998655432 2345677789999999999999999999999999999
Q ss_pred CCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEE
Q 017296 329 KGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVAL 366 (374)
Q Consensus 329 ~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~ 366 (374)
+.+.-.++...-++|++++-.+.+..++.|...|.|.+
T Consensus 258 Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 258 TYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred ceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 88887888877889999999988888999888877754
No 61
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.94 E-value=3.8e-25 Score=183.37 Aligned_cols=249 Identities=20% Similarity=0.298 Sum_probs=177.2
Q ss_pred eeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCC
Q 017296 53 VSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEP 132 (374)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (374)
+..+.+|. ..|..+.|.| ++..|+|||.|..|-+|++-.. +. ....++ .|.-++.
T Consensus 40 ~m~l~gh~--geI~~~~F~P--~gs~~aSgG~Dr~I~LWnv~gd-ce--N~~~lk---gHsgAVM--------------- 94 (338)
T KOG0265|consen 40 IMLLPGHK--GEIYTIKFHP--DGSCFASGGSDRAIVLWNVYGD-CE--NFWVLK---GHSGAVM--------------- 94 (338)
T ss_pred hhhcCCCc--ceEEEEEECC--CCCeEeecCCcceEEEEecccc-cc--ceeeec---cccceeE---------------
Confidence 34455565 3488888988 6789999999999999997432 11 011111 1110000
Q ss_pred CcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEe
Q 017296 133 KDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQA 212 (374)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (374)
+.. +..++ -.+++++.|++++.||+++|++..+...+.. ++..
T Consensus 95 ----~l~----------------~~~d~--s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~-------------~vNs-- 137 (338)
T KOG0265|consen 95 ----ELH----------------GMRDG--SHILSCGTDKTVRGWDAETGKRIRKHKGHTS-------------FVNS-- 137 (338)
T ss_pred ----eee----------------eccCC--CEEEEecCCceEEEEecccceeeehhccccc-------------eeee--
Confidence 000 00111 1356777899999999999998877754321 1110
Q ss_pred eecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEE
Q 017296 213 YLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKK 292 (374)
Q Consensus 213 ~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~ 292 (374)
+.|. ..+...+.+|+.|+++++||+|+. ..++++ ....+++++.|......+.+|+-|+.|++||++...+...
T Consensus 138 ~~p~-rrg~~lv~SgsdD~t~kl~D~R~k-~~~~t~-~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~--- 211 (338)
T KOG0265|consen 138 LDPS-RRGPQLVCSGSDDGTLKLWDIRKK-EAIKTF-ENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYT--- 211 (338)
T ss_pred cCcc-ccCCeEEEecCCCceEEEEeeccc-chhhcc-ccceeEEEEEecccccceeeccccCceeeeccccCcceEE---
Confidence 1111 134456788999999999999963 334433 2356789999977777889999999999999976655444
Q ss_pred eeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCC----eEEEEecccC----CceEEEEEeCCCCEEEEEeCCCcE
Q 017296 293 EINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKG----SALAILKYHH----ATCNAVSFSSDCKLMASASEDSTV 364 (374)
Q Consensus 293 ~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~----~~~~~~~~h~----~~v~~v~~sp~~~~las~s~D~~v 364 (374)
+..|.+.|..+..+|+|.++.+-+.|.++++||++.. ++++.+++|. ......+|+|++..+..+|.|..|
T Consensus 212 -lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~v 290 (338)
T KOG0265|consen 212 -LSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFV 290 (338)
T ss_pred -eecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceE
Confidence 4568889999999999999999999999999999753 4477787775 345677999999999999999999
Q ss_pred EEecCC
Q 017296 365 ALWELY 370 (374)
Q Consensus 365 ~~W~~~ 370 (374)
.+||..
T Consensus 291 yvwd~~ 296 (338)
T KOG0265|consen 291 YVWDTT 296 (338)
T ss_pred EEeecc
Confidence 999874
No 62
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=7.2e-26 Score=189.54 Aligned_cols=287 Identities=17% Similarity=0.242 Sum_probs=204.6
Q ss_pred cCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeee--e----eeceeeeEEeccCCccccceeeeccccCeEE
Q 017296 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW--V----HSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (374)
Q Consensus 16 gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vr 89 (374)
|.++-+.|..|+|||.+|+|||.||-|.|||..+|+.-..++ . -.....+.|+.|+- |...++||+.||.|+
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSR--DsEMlAsGsqDGkIK 288 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSR--DSEMLASGSQDGKIK 288 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecc--cHHHhhccCcCCcEE
Confidence 567778899999999999999999999999999886422211 0 11223577888876 667999999999999
Q ss_pred EEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEccc
Q 017296 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE 169 (374)
Q Consensus 90 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (374)
+|.+++|.+.+.- .+.+.-..+.+.+. .++. -+.+++
T Consensus 289 vWri~tG~ClRrF---drAHtkGvt~l~FS--------------------------------------rD~S--qiLS~s 325 (508)
T KOG0275|consen 289 VWRIETGQCLRRF---DRAHTKGVTCLSFS--------------------------------------RDNS--QILSAS 325 (508)
T ss_pred EEEEecchHHHHh---hhhhccCeeEEEEc--------------------------------------cCcc--hhhccc
Confidence 9999999764310 00111111111111 1111 245677
Q ss_pred CCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeee
Q 017296 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK 249 (374)
Q Consensus 170 ~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~ 249 (374)
.|.++|+--+.+|+++..+.++..- +.-..|.. .| ..++++|.||+|++|+.++. .++.+++
T Consensus 326 fD~tvRiHGlKSGK~LKEfrGHsSy-------------vn~a~ft~---dG-~~iisaSsDgtvkvW~~Ktt-eC~~Tfk 387 (508)
T KOG0275|consen 326 FDQTVRIHGLKSGKCLKEFRGHSSY-------------VNEATFTD---DG-HHIISASSDGTVKVWHGKTT-ECLSTFK 387 (508)
T ss_pred ccceEEEeccccchhHHHhcCcccc-------------ccceEEcC---CC-CeEEEecCCccEEEecCcch-hhhhhcc
Confidence 8899999999999988777654210 00011222 22 36999999999999999864 3455554
Q ss_pred c--CccCeEEEEEecC-CCceEEEecCCeEEEEEcCCCCCeEEEEEe-eecCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 017296 250 V--HLEPVLCLSIDES-CNGGISGGADQKIVLYNLDHSTGSCVIKKE-INLERPGISGTSIRPDSKIAATAGWDRRVRIY 325 (374)
Q Consensus 250 ~--h~~~v~~~~~~~~-~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iw 325 (374)
. ...+|+.+-.-|+ ...++.+...+++.+-++.++ .+.... -+.+....-+.++||-|.++.+.++|+...-|
T Consensus 388 ~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ---vVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF 464 (508)
T KOG0275|consen 388 PLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ---VVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCF 464 (508)
T ss_pred CCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccce---EEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEE
Confidence 3 3347777766443 345788888999999988532 221111 12223345677899999999999999999999
Q ss_pred EccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEec
Q 017296 326 NYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWE 368 (374)
Q Consensus 326 d~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~ 368 (374)
.+.+|+.-.++.-|+..|-.++-+|-..+|||-++||.+++|.
T Consensus 465 ~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 465 SVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 9999998888999999999999999999999999999999995
No 63
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=7.9e-23 Score=163.39 Aligned_cols=294 Identities=18% Similarity=0.277 Sum_probs=200.9
Q ss_pred cCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcc------c-----ceeeee---eeeeceeeeEEeccCCccccceeee
Q 017296 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ------H-----RTVSSS---WVHSAAHGIVSVATGPSIGLNKVIS 81 (374)
Q Consensus 16 gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~------~-----~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~s 81 (374)
.-+..|++++|+|.|.+-+.||..++.+|-.... + ++...+ ..| +...+.|.+|++ .+..+++
T Consensus 30 ~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~kh-hkgsiyc~~ws~--~geliat 106 (350)
T KOG0641|consen 30 EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKH-HKGSIYCTAWSP--CGELIAT 106 (350)
T ss_pred cchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccc-cCccEEEEEecC--ccCeEEe
Confidence 4577899999999999999999999999875321 1 110111 112 124588889987 6789999
Q ss_pred ccccCeEEEEecCCCCCCCC-CceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCC
Q 017296 82 QGRDGTVKCWDIENGGLSSN-PSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEG 160 (374)
Q Consensus 82 ~~~D~~vrvwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (374)
|+.|++|++--.+...+... +.+....+...+.-+.+.. .+..+
T Consensus 107 gsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld-----------------------------------~~~s~ 151 (350)
T KOG0641|consen 107 GSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLD-----------------------------------DPESG 151 (350)
T ss_pred cCCCceEEEEecccccccccCcceeeeecCCceeeeEEec-----------------------------------CCCcC
Confidence 99999999977754322110 1111111111111111110 01123
Q ss_pred CceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccC
Q 017296 161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (374)
Q Consensus 161 ~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~ 240 (374)
+.+++.+|..|..|.+=|-.+|+....+..+ .+...+..... ...+++|++|.+|++||++-
T Consensus 152 ~~il~s~gagdc~iy~tdc~~g~~~~a~sgh------------tghilalyswn------~~m~~sgsqdktirfwdlrv 213 (350)
T KOG0641|consen 152 GAILASAGAGDCKIYITDCGRGQGFHALSGH------------TGHILALYSWN------GAMFASGSQDKTIRFWDLRV 213 (350)
T ss_pred ceEEEecCCCcceEEEeecCCCCcceeecCC------------cccEEEEEEec------CcEEEccCCCceEEEEeeec
Confidence 4566777777888888788777765554432 12223332221 12588999999999999986
Q ss_pred CCCceeeee--cC-----ccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEE
Q 017296 241 PGIPLTAMK--VH-----LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIA 313 (374)
Q Consensus 241 ~~~~~~~~~--~h-----~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 313 (374)
+.. +.++. .| ...|..++++|.++.+++|-.|..+.|||++.. ++. ..+.-|...|+++.|||...||
T Consensus 214 ~~~-v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~--r~i--q~f~phsadir~vrfsp~a~yl 288 (350)
T KOG0641|consen 214 NSC-VNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGG--RMI--QRFHPHSADIRCVRFSPGAHYL 288 (350)
T ss_pred cce-eeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCC--cee--eeeCCCccceeEEEeCCCceEE
Confidence 532 33321 12 357999999999999999999999999999754 222 3344567789999999999999
Q ss_pred EEEeCCCeEEEEEccCC--e--EEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 314 ATAGWDRRVRIYNYRKG--S--ALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 314 ~s~~~dg~v~iwd~~~~--~--~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
++++.|.+|++=|++.. + ++-+...|...+-.+.|+|..--+++.|+|.++.+|-+.
T Consensus 289 lt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 289 LTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 99999999999998531 1 122445688888889999998889999999999999764
No 64
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.4e-24 Score=181.50 Aligned_cols=306 Identities=20% Similarity=0.278 Sum_probs=192.4
Q ss_pred CeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCccc-----ceeeeeeeeeceeeeEEeccCCcccc-ceeeecc
Q 017296 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH-----RTVSSSWVHSAAHGIVSVATGPSIGL-NKVISQG 83 (374)
Q Consensus 10 ~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~ 83 (374)
.+.+|+||.+.|++++|+.+|+.|+|++.|++|+||++..- +++..-- ...| -..+.|.+ |- ..+++..
T Consensus 78 ~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv--e~dh-pT~V~Fap--Dc~s~vv~~~ 152 (420)
T KOG2096|consen 78 NVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV--EYDH-PTRVVFAP--DCKSVVVSVK 152 (420)
T ss_pred hhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc--cCCC-ceEEEECC--CcceEEEEEc
Confidence 35689999999999999999999999999999999997542 2222100 0011 23445665 33 3455666
Q ss_pred ccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCce
Q 017296 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY 163 (374)
Q Consensus 84 ~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (374)
...+++++.+...+- .... ....+...+.+.. .+.....+. ....+.+|
T Consensus 153 ~g~~l~vyk~~K~~d---G~~~--~~~v~~D~~~f~~-----------kh~v~~i~i---------------GiA~~~k~ 201 (420)
T KOG2096|consen 153 RGNKLCVYKLVKKTD---GSGS--HHFVHIDNLEFER-----------KHQVDIINI---------------GIAGNAKY 201 (420)
T ss_pred cCCEEEEEEeeeccc---CCCC--cccccccccccch-----------hcccceEEE---------------eecCCceE
Confidence 677888888753210 0000 0000000000000 000000110 11233344
Q ss_pred EEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCC--
Q 017296 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP-- 241 (374)
Q Consensus 164 ~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~-- 241 (374)
+++++.|.+|.+|+++ |+.+..+..+...+. ++ ...| +|. .++++.---.|++|.+--.
T Consensus 202 -imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~-----------~a--avSP---~GR-Fia~~gFTpDVkVwE~~f~kd 262 (420)
T KOG2096|consen 202 -IMSASLDTKICLWDLK-GQLLQSIDTNQSSNY-----------DA--AVSP---DGR-FIAVSGFTPDVKVWEPIFTKD 262 (420)
T ss_pred -EEEecCCCcEEEEecC-Cceeeeecccccccc-----------ce--eeCC---CCc-EEEEecCCCCceEEEEEeccC
Confidence 5566778899999998 888877754322111 11 1222 232 4555666677999987321
Q ss_pred -----CCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCC-----CCeEEEEEe--eecCCCCeEEEEECCC
Q 017296 242 -----GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS-----TGSCVIKKE--INLERPGISGTSIRPD 309 (374)
Q Consensus 242 -----~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~-----~~~~~~~~~--~~~~~~~v~~~~~sp~ 309 (374)
-.....++||...|..++|+++....++.|.||++|+||++-. ....+-... +..-...-..++++|.
T Consensus 263 G~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~ 342 (420)
T KOG2096|consen 263 GTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPS 342 (420)
T ss_pred cchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCC
Confidence 1235568999999999999999889999999999999998621 111000000 0011122336899999
Q ss_pred CCEEEEEeCCCeEEEEEccCCeEEEEec-ccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 310 SKIAATAGWDRRVRIYNYRKGSALAILK-YHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 310 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
++.+|.+ .-.+++++..++++.+.++. .|...|.+++|+|+|+++||++ |..+++..-.++
T Consensus 343 g~~lA~s-~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ntpg 404 (420)
T KOG2096|consen 343 GDSLAVS-FGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIRNTPG 404 (420)
T ss_pred CcEEEee-cCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeecCCCc
Confidence 9988744 46689999999998877664 6899999999999999999988 788888765544
No 65
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=1.3e-24 Score=204.41 Aligned_cols=244 Identities=23% Similarity=0.408 Sum_probs=179.7
Q ss_pred eeeEEeccCCccccceeeeccccCeEEEEecCCCC--CCCCCceeeeecceeeeeeeeeccccccccccCCCCccccccc
Q 017296 63 HGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG--LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREV 140 (374)
Q Consensus 63 ~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (374)
..+.++.|++ +++.+++++.|+.+++|++..++ .... + ..|...+
T Consensus 160 ~sv~~~~fs~--~g~~l~~~~~~~~i~~~~~~~~~~~~~~~----l---~~h~~~v------------------------ 206 (456)
T KOG0266|consen 160 PSVTCVDFSP--DGRALAAASSDGLIRIWKLEGIKSNLLRE----L---SGHTRGV------------------------ 206 (456)
T ss_pred CceEEEEEcC--CCCeEEEccCCCcEEEeecccccchhhcc----c---cccccce------------------------
Confidence 3577778887 67789999999999999996553 1110 0 0000000
Q ss_pred CceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCC-ceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCC
Q 017296 141 GETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTA-ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQ 219 (374)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (374)
....+.+++ + ++++++.|.++++||++.. .++.++..+. ...+++ .|.+.
T Consensus 207 -----------~~~~fs~d~-~-~l~s~s~D~tiriwd~~~~~~~~~~l~gH~----------~~v~~~---~f~p~--- 257 (456)
T KOG0266|consen 207 -----------SDVAFSPDG-S-YLLSGSDDKTLRIWDLKDDGRNLKTLKGHS----------TYVTSV---AFSPD--- 257 (456)
T ss_pred -----------eeeEECCCC-c-EEEEecCCceEEEeeccCCCeEEEEecCCC----------CceEEE---EecCC---
Confidence 000111222 2 5678888999999999544 6667775431 112222 24432
Q ss_pred CceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCC-
Q 017296 220 GFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLER- 298 (374)
Q Consensus 220 ~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~- 298 (374)
+ ..+++|+.|++|++||+++ ..+...+.+|.++|.+++|.+++..+++++.|+.|++||+......+ ...+..+.
T Consensus 258 g-~~i~Sgs~D~tvriWd~~~-~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~--~~~~~~~~~ 333 (456)
T KOG0266|consen 258 G-NLLVSGSDDGTVRIWDVRT-GECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLC--LKLLSGAEN 333 (456)
T ss_pred C-CEEEEecCCCcEEEEeccC-CeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceee--eecccCCCC
Confidence 3 4799999999999999987 67788899999999999999999999999999999999997553211 12222222
Q ss_pred C-CeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCce---EEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 299 P-GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATC---NAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 299 ~-~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v---~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
. .++.+.|+|+++++++++.|+.+++||+..++....+.+|...+ .+..+++.++++.+++.|+.|++|++...
T Consensus 334 ~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~ 411 (456)
T KOG0266|consen 334 SAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG 411 (456)
T ss_pred CCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc
Confidence 2 58999999999999999999999999999999999999998753 34445789999999999999999999753
No 66
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.94 E-value=4.8e-24 Score=214.62 Aligned_cols=272 Identities=16% Similarity=0.211 Sum_probs=183.2
Q ss_pred CCcEEEEeCcccceeeeeee---eeceeeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeee
Q 017296 39 GGELRIWDTVQHRTVSSSWV---HSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCK 115 (374)
Q Consensus 39 D~~v~vWd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~ 115 (374)
+|.+++|+....+....+.. ..+...+.+++|++ +++++++|+.|++|++||......... ..+...
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~--dg~~latgg~D~~I~iwd~~~~~~~~~--------~~~~~~ 526 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDR--DGEFFATAGVNKKIKIFECESIIKDGR--------DIHYPV 526 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECC--CCCEEEEEeCCCEEEEEECCccccccc--------ccccce
Confidence 67788898765443222111 11224477888887 678999999999999999864210000 000000
Q ss_pred eeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCC
Q 017296 116 LSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGG 195 (374)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~ 195 (374)
..+.. . ...... .+.+..+. ++++++.|++|++||+.+++.+..+..+.
T Consensus 527 ~~~~~--~-------~~v~~l------------------~~~~~~~~-~las~~~Dg~v~lWd~~~~~~~~~~~~H~--- 575 (793)
T PLN00181 527 VELAS--R-------SKLSGI------------------CWNSYIKS-QVASSNFEGVVQVWDVARSQLVTEMKEHE--- 575 (793)
T ss_pred EEecc--c-------CceeeE------------------EeccCCCC-EEEEEeCCCeEEEEECCCCeEEEEecCCC---
Confidence 00000 0 000000 01111122 46677789999999999988776664321
Q ss_pred CCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEe-cCCCceEEEecCC
Q 017296 196 SPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSID-ESCNGGISGGADQ 274 (374)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~~s~s~D~ 274 (374)
....++ .+.+. ....+++|+.||+|++||++. ...+..+.. ...+.++.|. +++..+++|+.|+
T Consensus 576 -------~~V~~l---~~~p~---~~~~L~Sgs~Dg~v~iWd~~~-~~~~~~~~~-~~~v~~v~~~~~~g~~latgs~dg 640 (793)
T PLN00181 576 -------KRVWSI---DYSSA---DPTLLASGSDDGSVKLWSINQ-GVSIGTIKT-KANICCVQFPSESGRSLAFGSADH 640 (793)
T ss_pred -------CCEEEE---EEcCC---CCCEEEEEcCCCEEEEEECCC-CcEEEEEec-CCCeEEEEEeCCCCCEEEEEeCCC
Confidence 111111 23221 223689999999999999976 344555554 3688999994 5678899999999
Q ss_pred eEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCC------eEEEEecccCCceEEEEE
Q 017296 275 KIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKG------SALAILKYHHATCNAVSF 348 (374)
Q Consensus 275 ~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~------~~~~~~~~h~~~v~~v~~ 348 (374)
.|++||++..... ...+..|...|..+.|. ++.+|++++.|++|++||+..+ +.+..+.+|...+..++|
T Consensus 641 ~I~iwD~~~~~~~---~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~ 716 (793)
T PLN00181 641 KVYYYDLRNPKLP---LCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGL 716 (793)
T ss_pred eEEEEECCCCCcc---ceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEE
Confidence 9999999743211 12234577789999997 6789999999999999999743 567889999999999999
Q ss_pred eCCCCEEEEEeCCCcEEEecCC
Q 017296 349 SSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 349 sp~~~~las~s~D~~v~~W~~~ 370 (374)
+|++++||+|+.|+.|++|+..
T Consensus 717 s~~~~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 717 SVSDGYIATGSETNEVFVYHKA 738 (793)
T ss_pred cCCCCEEEEEeCCCEEEEEECC
Confidence 9999999999999999999964
No 67
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.4e-25 Score=201.57 Aligned_cols=298 Identities=19% Similarity=0.299 Sum_probs=199.5
Q ss_pred cCCCcee---EEEEeC-CCCEEEEecCCCcEEEEeCcccc------eeeeeeeeeceeeeEEeccCCccccceeeecccc
Q 017296 16 GHRASVT---DVCFHQ-TKPILFAGTTGGELRIWDTVQHR------TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (374)
Q Consensus 16 gH~~~V~---~l~~~~-~~~~l~s~s~D~~v~vWd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D 85 (374)
.|...|. .+..+. .+++|+|||.||+|++|+..... .+..+..|... +.-++.+. +++.|+|+|.|
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDW--VNDiiL~~--~~~tlIS~SsD 94 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDW--VNDIILCG--NGKTLISASSD 94 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhH--HhhHHhhc--CCCceEEecCC
Confidence 3555666 566664 45679999999999999975432 24456666544 33334433 45789999999
Q ss_pred CeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEE
Q 017296 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA 165 (374)
Q Consensus 86 ~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (374)
-+|++|++..+.. .++.+..-| ...+. +. ........++
T Consensus 95 tTVK~W~~~~~~~-----~c~stir~H----------------------------~DYVk--cl------a~~ak~~~lv 133 (735)
T KOG0308|consen 95 TTVKVWNAHKDNT-----FCMSTIRTH----------------------------KDYVK--CL------AYIAKNNELV 133 (735)
T ss_pred ceEEEeecccCcc-----hhHhhhhcc----------------------------cchhe--ee------eecccCceeE
Confidence 9999999976421 011100000 00000 00 0012234578
Q ss_pred EcccCCCeEEEEecCCCce--eEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCC
Q 017296 166 VAGEQLSEVEIWDLNTAER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243 (374)
Q Consensus 166 ~~~~~d~~i~vWd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~ 243 (374)
++|+-|+.|.+||++++.. +..+.... ..+....++...+.++ .++....+++|+..+.|++||.+...
T Consensus 134 aSgGLD~~IflWDin~~~~~l~~s~n~~t-~~sl~sG~k~siYSLA-------~N~t~t~ivsGgtek~lr~wDprt~~- 204 (735)
T KOG0308|consen 134 ASGGLDRKIFLWDINTGTATLVASFNNVT-VNSLGSGPKDSIYSLA-------MNQTGTIIVSGGTEKDLRLWDPRTCK- 204 (735)
T ss_pred EecCCCccEEEEEccCcchhhhhhccccc-cccCCCCCccceeeee-------cCCcceEEEecCcccceEEecccccc-
Confidence 8999999999999998743 21111100 0111112222222222 22333468889999999999998754
Q ss_pred ceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEE
Q 017296 244 PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVR 323 (374)
Q Consensus 244 ~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~ 323 (374)
.+..++||++.|.++-++.++..++++|.||+|+|||+..+ +|.. .+..|..+++++..+|+-.++.+|+.||.|.
T Consensus 205 kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ--rCl~--T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~ 280 (735)
T KOG0308|consen 205 KIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ--RCLA--TYIVHKEGVWALQSSPSFTHVYSGGRDGNIY 280 (735)
T ss_pred ceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc--ceee--eEEeccCceEEEeeCCCcceEEecCCCCcEE
Confidence 45568899999999999999999999999999999999643 3443 3556778899999999999999999999999
Q ss_pred EEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCC
Q 017296 324 IYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 324 iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~ 371 (374)
.=|+.+......+...+.+|..+..+-..+-+-.+..|+.|+-|...+
T Consensus 281 ~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 281 RTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEP 328 (735)
T ss_pred ecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCcc
Confidence 999988644444444566777777764444446678899999998754
No 68
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=3.3e-24 Score=187.16 Aligned_cols=287 Identities=17% Similarity=0.270 Sum_probs=194.0
Q ss_pred CCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeee-e-------------e----eeeceeeeEEec
Q 017296 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSS-S-------------W----VHSAAHGIVSVA 69 (374)
Q Consensus 8 ~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~-~-------------~----~~~~~~~~~~~~ 69 (374)
...+.++..|.-+|.+|+++|+++++++++.|++|.-|+..+++.... . . .|. ..+.+++
T Consensus 132 s~~~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~--keil~~a 209 (479)
T KOG0299|consen 132 SSDFRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHV--KEILTLA 209 (479)
T ss_pred cccceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccccccc--ceeEEEE
Confidence 334788899999999999999999999999999999999988764311 0 0 221 2366777
Q ss_pred cCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCC
Q 017296 70 TGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSL 149 (374)
Q Consensus 70 ~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (374)
.++ |+.+|++|+.|.-|.||+.++.+... + ...|--.+. +..+.
T Consensus 210 vS~--Dgkylatgg~d~~v~Iw~~~t~ehv~----~---~~ghr~~V~-----------------~L~fr---------- 253 (479)
T KOG0299|consen 210 VSS--DGKYLATGGRDRHVQIWDCDTLEHVK----V---FKGHRGAVS-----------------SLAFR---------- 253 (479)
T ss_pred EcC--CCcEEEecCCCceEEEecCcccchhh----c---cccccccee-----------------eeeee----------
Confidence 776 78999999999999999999864321 1 001100000 00000
Q ss_pred CCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEE-Ee
Q 017296 150 CDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA-GY 228 (374)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gs 228 (374)
.+. --+++++.|+.|++|++.....+.++..+. .... .+.+. ....+++ |.
T Consensus 254 ---------~gt-~~lys~s~Drsvkvw~~~~~s~vetlyGHq----------d~v~--~IdaL------~reR~vtVGg 305 (479)
T KOG0299|consen 254 ---------KGT-SELYSASADRSVKVWSIDQLSYVETLYGHQ----------DGVL--GIDAL------SRERCVTVGG 305 (479)
T ss_pred ---------cCc-cceeeeecCCceEEEehhHhHHHHHHhCCc----------ccee--eechh------cccceEEecc
Confidence 000 124677889999999998766555554432 1111 11111 1113444 67
Q ss_pred cCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEee--------ecCCCC
Q 017296 229 EDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEI--------NLERPG 300 (374)
Q Consensus 229 ~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~--------~~~~~~ 300 (374)
.|.++++|++.. ...-.+.+|...+.|++|=.+ ..+++||.+|.|.||++-.....+...... ..+..+
T Consensus 306 rDrT~rlwKi~e--esqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~W 382 (479)
T KOG0299|consen 306 RDRTVRLWKIPE--ESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFW 382 (479)
T ss_pred ccceeEEEeccc--cceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccc
Confidence 999999999954 234456788889999999333 358999999999999986554333321110 011137
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEccCC----eEEEEecccCCceEEEEEeCCCCEEEEE-eCCCcE
Q 017296 301 ISGTSIRPDSKIAATAGWDRRVRIYNYRKG----SALAILKYHHATCNAVSFSSDCKLMASA-SEDSTV 364 (374)
Q Consensus 301 v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~----~~~~~~~~h~~~v~~v~~sp~~~~las~-s~D~~v 364 (374)
+++++.-|...++|+|+++|.||+|-+.++ +++..+. -.+.|++++|+++|+.|+.| +....+
T Consensus 383 itsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRl 450 (479)
T KOG0299|consen 383 ITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRL 450 (479)
T ss_pred eeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEeccccccc
Confidence 899999999999999999999999999876 3344444 56799999999999955544 544333
No 69
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.1e-24 Score=203.25 Aligned_cols=190 Identities=22% Similarity=0.282 Sum_probs=140.7
Q ss_pred eEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCC
Q 017296 163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 242 (374)
Q Consensus 163 ~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~ 242 (374)
.++++++-|+|||||++...+|+.++..+. ++.+ .+|.|.. -.++++||-||-||||++...
T Consensus 381 ~fLLSSSMDKTVRLWh~~~~~CL~~F~Hnd-------------fVTc-VaFnPvD---DryFiSGSLD~KvRiWsI~d~- 442 (712)
T KOG0283|consen 381 NFLLSSSMDKTVRLWHPGRKECLKVFSHND-------------FVTC-VAFNPVD---DRYFISGSLDGKVRLWSISDK- 442 (712)
T ss_pred CeeEeccccccEEeecCCCcceeeEEecCC-------------eeEE-EEecccC---CCcEeecccccceEEeecCcC-
Confidence 456677779999999999999988876531 2222 2466542 236999999999999999542
Q ss_pred CceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeec------CCCCeEEEEECCCCC-EEEE
Q 017296 243 IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINL------ERPGISGTSIRPDSK-IAAT 315 (374)
Q Consensus 243 ~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~------~~~~v~~~~~sp~~~-~l~s 315 (374)
...... .-.+-|+++++.|+|.+.+.|+.+|.+++|+...-. ......+.. ....|+++.|.|... -|+.
T Consensus 443 ~Vv~W~-Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk--~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLV 519 (712)
T KOG0283|consen 443 KVVDWN-DLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLK--LVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLV 519 (712)
T ss_pred eeEeeh-hhhhhheeEEeccCCceEEEEEeccEEEEEEccCCe--EEEeeeEeeccCccccCceeeeeEecCCCCCeEEE
Confidence 222222 223789999999999999999999999999986432 222222221 123699999998544 4667
Q ss_pred EeCCCeEEEEEccCCeEEEEecccCC--ceEEEEEeCCCCEEEEEeCCCcEEEecCCCCC
Q 017296 316 AGWDRRVRIYNYRKGSALAILKYHHA--TCNAVSFSSDCKLMASASEDSTVALWELYPPH 373 (374)
Q Consensus 316 ~~~dg~v~iwd~~~~~~~~~~~~h~~--~v~~v~~sp~~~~las~s~D~~v~~W~~~~~~ 373 (374)
++.|..|||+|.++.+.+..++++.+ .=....|+.||++|+++|+|..|++|+++.++
T Consensus 520 TSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 520 TSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred ecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 88999999999988888777887653 23456899999999999999999999986543
No 70
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.93 E-value=1.5e-25 Score=181.36 Aligned_cols=253 Identities=20% Similarity=0.270 Sum_probs=181.4
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
.=+.+|+||++.|...+++.+..+-+|++.|=+-+|||..+|..++++. | .|-+.+++|+- |.++|++|+.++-+
T Consensus 50 dwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-h--khivk~~af~~--ds~~lltgg~ekll 124 (334)
T KOG0278|consen 50 DWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-H--KHIVKAVAFSQ--DSNYLLTGGQEKLL 124 (334)
T ss_pred CcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-h--hheeeeEEecc--cchhhhccchHHHh
Confidence 4578999999999999999998999999999999999999999988764 3 36688888876 67899999999999
Q ss_pred EEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc
Q 017296 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (374)
|++|++..+. .|. .+ ..|. +. +.... +...+ +.+ +++
T Consensus 125 rvfdln~p~A--pp~-E~---~ght---------------------------g~-Ir~v~-------wc~eD-~~i-LSS 161 (334)
T KOG0278|consen 125 RVFDLNRPKA--PPK-EI---SGHT---------------------------GG-IRTVL-------WCHED-KCI-LSS 161 (334)
T ss_pred hhhhccCCCC--Cch-hh---cCCC---------------------------Cc-ceeEE-------EeccC-ceE-Eee
Confidence 9999976432 111 11 0000 00 00000 00011 223 344
Q ss_pred cCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeee
Q 017296 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~ 248 (374)
.+|++||+||.++++....+.-+....+.- +. +.+ .+++-...++|++||..+.+ .+...
T Consensus 162 add~tVRLWD~rTgt~v~sL~~~s~VtSlE--------------vs---~dG--~ilTia~gssV~Fwdaksf~-~lKs~ 221 (334)
T KOG0278|consen 162 ADDKTVRLWDHRTGTEVQSLEFNSPVTSLE--------------VS---QDG--RILTIAYGSSVKFWDAKSFG-LLKSY 221 (334)
T ss_pred ccCCceEEEEeccCcEEEEEecCCCCccee--------------ec---cCC--CEEEEecCceeEEecccccc-ceeec
Confidence 889999999999999888776443222211 11 122 36666677899999987543 22222
Q ss_pred ecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcc
Q 017296 249 KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYR 328 (374)
Q Consensus 249 ~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~ 328 (374)
+ -.-.|.+.+.+|+...++.|+.|.-+..||..++..... ..+.|-..|-++.|+|||..-|+|+.||+|++|...
T Consensus 222 k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~---~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 222 K-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGS---YNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTT 297 (334)
T ss_pred c-CccccccccccCCCceEEecCcceEEEEEeccCCceeee---cccCCCCceEEEEECCCCceeeccCCCceEEEEEec
Confidence 1 244677888889888889999999999999876543322 135566789999999999999999999999999887
Q ss_pred CCeEE
Q 017296 329 KGSAL 333 (374)
Q Consensus 329 ~~~~~ 333 (374)
.++..
T Consensus 298 ~~~~~ 302 (334)
T KOG0278|consen 298 PGKTY 302 (334)
T ss_pred CCCch
Confidence 66544
No 71
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.93 E-value=3.5e-24 Score=178.46 Aligned_cols=305 Identities=16% Similarity=0.238 Sum_probs=201.4
Q ss_pred CCCCCCCC-CeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcc------------c------ceeeeeeeeece
Q 017296 2 SKRPPPPD-PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ------------H------RTVSSSWVHSAA 62 (374)
Q Consensus 2 ~~~~~~~~-~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~------------~------~~~~~~~~~~~~ 62 (374)
+++|.|++ +...+..|++++++-+|++||.+++|||.|.+|++.|.+. + ..+.++..|.
T Consensus 95 ~~s~e~~~yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~-- 172 (430)
T KOG0640|consen 95 GSSPEPSEYETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHV-- 172 (430)
T ss_pred cCCCCCcccceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhcc--
Confidence 34565654 5667889999999999999999999999999999999751 1 1234444454
Q ss_pred eeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCc
Q 017296 63 HGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE 142 (374)
Q Consensus 63 ~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (374)
..+..+.|.| ....|+||+.|++||+||........ ..+ ..+. .++-.
T Consensus 173 devn~l~FHP--re~ILiS~srD~tvKlFDfsK~saKr----A~K------------------~~qd--------~~~vr 220 (430)
T KOG0640|consen 173 DEVNDLDFHP--RETILISGSRDNTVKLFDFSKTSAKR----AFK------------------VFQD--------TEPVR 220 (430)
T ss_pred Ccccceeecc--hhheEEeccCCCeEEEEecccHHHHH----HHH------------------Hhhc--------cceee
Confidence 3477788887 45789999999999999986431100 000 0000 00000
Q ss_pred eeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCce
Q 017296 143 TVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFV 222 (374)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (374)
.+ .+. +++. ++++|.+-.++++||+++-++....... ..+ .+ . +....+.. ...
T Consensus 221 si----------SfH-PsGe-fllvgTdHp~~rlYdv~T~QcfvsanPd-----~qh--t~-a--i~~V~Ys~----t~~ 274 (430)
T KOG0640|consen 221 SI----------SFH-PSGE-FLLVGTDHPTLRLYDVNTYQCFVSANPD-----DQH--TG-A--ITQVRYSS----TGS 274 (430)
T ss_pred eE----------eec-CCCc-eEEEecCCCceeEEeccceeEeeecCcc-----ccc--cc-c--eeEEEecC----Ccc
Confidence 00 011 2223 4556777789999999998865443210 001 01 1 11112222 223
Q ss_pred EEEEEecCCcEEEEeccCCCCceeee-ecCcc-CeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeee---cC
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAM-KVHLE-PVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEIN---LE 297 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~-~~h~~-~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~---~~ 297 (374)
..++||.||.|++||=-+. .++.++ ..|.. .|-+..|..++.++++.+.|..++||.+. +++++....-. ..
T Consensus 275 lYvTaSkDG~IklwDGVS~-rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~--t~R~l~~YtGAg~tgr 351 (430)
T KOG0640|consen 275 LYVTASKDGAIKLWDGVSN-RCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEIS--TGRMLKEYTGAGTTGR 351 (430)
T ss_pred EEEEeccCCcEEeeccccH-HHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeec--CCceEEEEecCCcccc
Confidence 5789999999999996543 334444 34644 67778888999999999999999999885 44554433211 11
Q ss_pred CCCeEEEEECCCCCEEEEEeC-CCeEEEEEccCCeEEEEe-cccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 298 RPGISGTSIRPDSKIAATAGW-DRRVRIYNYRKGSALAIL-KYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 298 ~~~v~~~~~sp~~~~l~s~~~-dg~v~iwd~~~~~~~~~~-~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
+..-+...|.....|++.-.+ .+.+.-||.+++.....+ .+|.+.+..+.-||.+..+.|+|.|-..|+|--
T Consensus 352 q~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 352 QKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred hhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 111234556666667665543 467888999988765443 479999999999999999999999999999953
No 72
>PTZ00421 coronin; Provisional
Probab=99.93 E-value=1.4e-23 Score=196.96 Aligned_cols=144 Identities=16% Similarity=0.246 Sum_probs=105.1
Q ss_pred EEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCC-eE
Q 017296 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPG-IS 302 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~-v~ 302 (374)
+++|+.|++|++||++. ......+.+|...|.+++|++++..+++++.|++|++||++... .. ..+..|... ..
T Consensus 141 LaSgs~DgtVrIWDl~t-g~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~--~v--~tl~~H~~~~~~ 215 (493)
T PTZ00421 141 LASAGADMVVNVWDVER-GKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT--IV--SSVEAHASAKSQ 215 (493)
T ss_pred EEEEeCCCEEEEEECCC-CeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCc--EE--EEEecCCCCcce
Confidence 56666777777777754 33455566788899999999999999999999999999997542 22 233444432 44
Q ss_pred EEEECCCCCEEEEEe----CCCeEEEEEccCCe-EEEEecccC-CceEEEEEeCCCCEEEEEe-CCCcEEEecCCCC
Q 017296 303 GTSIRPDSKIAATAG----WDRRVRIYNYRKGS-ALAILKYHH-ATCNAVSFSSDCKLMASAS-EDSTVALWELYPP 372 (374)
Q Consensus 303 ~~~~sp~~~~l~s~~----~dg~v~iwd~~~~~-~~~~~~~h~-~~v~~v~~sp~~~~las~s-~D~~v~~W~~~~~ 372 (374)
.+.|.|++..+++++ .|++|++||+++.+ ++.....+. ..+....|+|++.+|++++ .|++|++|++...
T Consensus 216 ~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 216 RCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred EEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 677888877777654 47999999998654 444444333 4566677999999998887 5999999998654
No 73
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.93 E-value=3.6e-24 Score=182.72 Aligned_cols=271 Identities=17% Similarity=0.246 Sum_probs=176.6
Q ss_pred CCCeEEeecCCCceeEEEEeCCCC---EEEEecCCCcEEEEeCccccee----eeeeeeeceeeeEEeccCCccccceee
Q 017296 8 PDPVAVLRGHRASVTDVCFHQTKP---ILFAGTTGGELRIWDTVQHRTV----SSSWVHSAAHGIVSVATGPSIGLNKVI 80 (374)
Q Consensus 8 ~~~~~~l~gH~~~V~~l~~~~~~~---~l~s~s~D~~v~vWd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (374)
.+.+.++.||.++|.++++..... +|+|+|.|.++++|..+.++.. ..-.+|... |.++.... ++.+++
T Consensus 134 Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~--V~sVsv~~--sgtr~~ 209 (423)
T KOG0313|consen 134 GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRS--VDSVSVDS--SGTRFC 209 (423)
T ss_pred CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccc--eeEEEecC--CCCeEE
Confidence 367889999999999999864443 5999999999999998776532 223366543 55665544 568999
Q ss_pred eccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCC--CCC-C
Q 017296 81 SQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK--DDV-P 157 (374)
Q Consensus 81 s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~ 157 (374)
||+.|.+|++|+..+..... +... ..+...+.....+. ..+ ...+.+..+.. ..+ .
T Consensus 210 SgS~D~~lkiWs~~~~~~~~-----~E~~---------s~~rrk~~~~~~~~---~~r----~P~vtl~GHt~~Vs~V~w 268 (423)
T KOG0313|consen 210 SGSWDTMLKIWSVETDEEDE-----LESS---------SNRRRKKQKREKEG---GTR----TPLVTLEGHTEPVSSVVW 268 (423)
T ss_pred eecccceeeecccCCCcccc-----cccc---------chhhhhhhhhhhcc---ccc----CceEEecccccceeeEEE
Confidence 99999999999943321100 0000 00000000000000 000 00000000100 000 0
Q ss_pred CCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEe
Q 017296 158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 237 (374)
Q Consensus 158 ~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwd 237 (374)
.+ .-.++++++|.+|+.||++++....++..+.. -.|+. +.+ ...++++|+.|.-|++||
T Consensus 269 ~d--~~v~yS~SwDHTIk~WDletg~~~~~~~~~ks-----------l~~i~---~~~----~~~Ll~~gssdr~irl~D 328 (423)
T KOG0313|consen 269 SD--ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKS-----------LNCIS---YSP----LSKLLASGSSDRHIRLWD 328 (423)
T ss_pred cC--CCceEeecccceEEEEEeecccceeeeecCcc-----------eeEee---ccc----ccceeeecCCCCceeecC
Confidence 11 23578899999999999999987766643211 01111 111 123688999999999999
Q ss_pred ccCCC--CceeeeecCccCeEEEEEecC-CCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEE
Q 017296 238 IRNPG--IPLTAMKVHLEPVLCLSIDES-CNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAA 314 (374)
Q Consensus 238 l~~~~--~~~~~~~~h~~~v~~~~~~~~-~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 314 (374)
.|++. ...+++.+|...|..+.++|. ...|+++|.|+++++||++.... ....+..|.+.|.++.+.. +.+|+
T Consensus 329 PR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~---plydI~~h~DKvl~vdW~~-~~~Iv 404 (423)
T KOG0313|consen 329 PRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKA---PLYDIAGHNDKVLSVDWNE-GGLIV 404 (423)
T ss_pred CCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCC---cceeeccCCceEEEEeccC-CceEE
Confidence 98764 456778999999999999874 45689999999999999975431 1245667788899999985 55899
Q ss_pred EEeCCCeEEEEEc
Q 017296 315 TAGWDRRVRIYNY 327 (374)
Q Consensus 315 s~~~dg~v~iwd~ 327 (374)
+||.|.+++|+.-
T Consensus 405 SGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 405 SGGADNKLRIFKG 417 (423)
T ss_pred eccCcceEEEecc
Confidence 9999999999843
No 74
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.93 E-value=1.3e-23 Score=183.22 Aligned_cols=255 Identities=20% Similarity=0.325 Sum_probs=181.7
Q ss_pred ecCCCceeEEEEeCCC-CEEEEecCCCcEEEEeCcccc----------eeeeeeeeeceeeeEEeccCCccccceeeecc
Q 017296 15 RGHRASVTDVCFHQTK-PILFAGTTGGELRIWDTVQHR----------TVSSSWVHSAAHGIVSVATGPSIGLNKVISQG 83 (374)
Q Consensus 15 ~gH~~~V~~l~~~~~~-~~l~s~s~D~~v~vWd~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 83 (374)
--|.+.|+.+++-|+. .+++|++..+.|.|||..... +-..+.+|... ...++|+.... -+|++++
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~e--g~glsWn~~~~-g~Lls~~ 197 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKE--GYGLSWNRQQE-GTLLSGS 197 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccc--ccccccccccc-eeEeecc
Confidence 4699999999998876 567788889999999975421 11256677652 45567766433 3789999
Q ss_pred ccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCce
Q 017296 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY 163 (374)
Q Consensus 84 ~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (374)
.|++|++||+....... +... ++
T Consensus 198 ~d~~i~lwdi~~~~~~~-~~~~-------------------------------------------------------p~- 220 (422)
T KOG0264|consen 198 DDHTICLWDINAESKED-KVVD-------------------------------------------------------PK- 220 (422)
T ss_pred CCCcEEEEeccccccCC-cccc-------------------------------------------------------ce-
Confidence 99999999997542110 0000 00
Q ss_pred EEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccC-CC
Q 017296 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN-PG 242 (374)
Q Consensus 164 ~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~-~~ 242 (374)
....+-. ..| .. ..+.+. ....+.+.++|+.+.|||+|. ..
T Consensus 221 ~~~~~h~-~~V-----------eD-----------------------V~~h~~---h~~lF~sv~dd~~L~iwD~R~~~~ 262 (422)
T KOG0264|consen 221 TIFSGHE-DVV-----------ED-----------------------VAWHPL---HEDLFGSVGDDGKLMIWDTRSNTS 262 (422)
T ss_pred EEeecCC-cce-----------eh-----------------------hhcccc---chhhheeecCCCeEEEEEcCCCCC
Confidence 0000000 000 00 001110 112477888999999999995 34
Q ss_pred CceeeeecCccCeEEEEEec-CCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCC-CCEEEEEeCCC
Q 017296 243 IPLTAMKVHLEPVLCLSIDE-SCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPD-SKIAATAGWDR 320 (374)
Q Consensus 243 ~~~~~~~~h~~~v~~~~~~~-~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~s~~~dg 320 (374)
++....++|..+|+|++|+| +...+||||.|++|+|||++..... ...+..|...|..+.|||. ...+||++.|+
T Consensus 263 ~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~---lh~~e~H~dev~~V~WSPh~etvLASSg~D~ 339 (422)
T KOG0264|consen 263 KPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKP---LHTFEGHEDEVFQVEWSPHNETVLASSGTDR 339 (422)
T ss_pred CCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccC---ceeccCCCcceEEEEeCCCCCceeEecccCC
Confidence 56677889999999999987 4556799999999999999754321 1234567888999999996 55689999999
Q ss_pred eEEEEEccC--------------CeEEEEecccCCceEEEEEeCCCC-EEEEEeCCCcEEEecCC
Q 017296 321 RVRIYNYRK--------------GSALAILKYHHATCNAVSFSSDCK-LMASASEDSTVALWELY 370 (374)
Q Consensus 321 ~v~iwd~~~--------------~~~~~~~~~h~~~v~~v~~sp~~~-~las~s~D~~v~~W~~~ 370 (374)
++.+||+.. .+.+....||...|....|+|+.. .|+|+++|+.+.||+..
T Consensus 340 rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 340 RLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred cEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 999999953 244677889999999999999888 67899999999999864
No 75
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.92 E-value=9.2e-23 Score=173.38 Aligned_cols=264 Identities=19% Similarity=0.258 Sum_probs=178.9
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
.....+.||+++|+++.|+-+|.+|+||+.+|.|+||+..++...-.+.. ....+.=+.+.+ ....|+.|+.||.+
T Consensus 97 e~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~--e~~dieWl~WHp--~a~illAG~~DGsv 172 (399)
T KOG0296|consen 97 EFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQ--EVEDIEWLKWHP--RAHILLAGSTDGSV 172 (399)
T ss_pred cceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeec--ccCceEEEEecc--cccEEEeecCCCcE
Confidence 36778999999999999999999999999999999999988765443321 122344445555 45789999999999
Q ss_pred EEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc
Q 017296 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (374)
-+|.+.++.. .+..++|.+ +. ... .+.+++++ ++.+
T Consensus 173 Wmw~ip~~~~-------~kv~~Gh~~-----------------~c-----------------t~G-~f~pdGKr--~~tg 208 (399)
T KOG0296|consen 173 WMWQIPSQAL-------CKVMSGHNS-----------------PC-----------------TCG-EFIPDGKR--ILTG 208 (399)
T ss_pred EEEECCCcce-------eeEecCCCC-----------------Cc-----------------ccc-cccCCCce--EEEE
Confidence 9999987421 111111100 00 000 12244544 4456
Q ss_pred cCCCeEEEEecCCCceeEEeccCccCCCC----------CcCCC-CCccee------EEE--------------------
Q 017296 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSP----------NFSSK-GRGMCM------AVQ-------------------- 211 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~~~~~~~~~~~~~~~----------~~~~~-~~~~~~------~~~-------------------- 211 (374)
..|++|++||+.+++.+.++.+......+ ..... ....+. .+.
T Consensus 209 y~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~es 288 (399)
T KOG0296|consen 209 YDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDES 288 (399)
T ss_pred ecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhh
Confidence 67999999999999988777632210000 00000 000000 000
Q ss_pred -eeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEE
Q 017296 212 -AYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVI 290 (374)
Q Consensus 212 -~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~ 290 (374)
.+.+.. ...++.+.|+-||+|.|||+... .++..-.|..+|..+.|.+ -.++++++.+|.|+.||.+.+ + +
T Consensus 289 ve~~~~s-s~lpL~A~G~vdG~i~iyD~a~~--~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG--~--l 360 (399)
T KOG0296|consen 289 VESIPSS-SKLPLAACGSVDGTIAIYDLAAS--TLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTG--Q--L 360 (399)
T ss_pred hhhcccc-cccchhhcccccceEEEEecccc--hhheeccCCCceEEEEEcC-cchheeeccCceEEeeecccc--c--e
Confidence 011100 11124677999999999999753 2333446999999999988 467899999999999998754 3 3
Q ss_pred EEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcc
Q 017296 291 KKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYR 328 (374)
Q Consensus 291 ~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~ 328 (374)
......|+..|..++++||.+++++++.|++.+||++.
T Consensus 361 ~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 361 KFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 34567888999999999999999999999999999864
No 76
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=1.6e-23 Score=188.12 Aligned_cols=332 Identities=21% Similarity=0.226 Sum_probs=210.1
Q ss_pred CCCCCCCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeec
Q 017296 3 KRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ 82 (374)
Q Consensus 3 ~~~~~~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 82 (374)
.||+|..+-..++||++.|++|...|.|.+|+|||.||+|+||.+.+|+|+.+.... ..|.+++|++..+.-.|+.+
T Consensus 385 LrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d---~~I~~vaw~P~~~~~vLAvA 461 (733)
T KOG0650|consen 385 LRPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD---SEIRSVAWNPLSDLCVLAVA 461 (733)
T ss_pred cCCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec---ceeEEEEecCCCCceeEEEE
Confidence 589999999999999999999999999999999999999999999999999887643 34889999986554444444
Q ss_pred cccCeEEEEecCCCCCCCC-CceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCC-CCCC
Q 017296 83 GRDGTVKCWDIENGGLSSN-PSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDV-PAEG 160 (374)
Q Consensus 83 ~~D~~vrvwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 160 (374)
-. .++.+-+..-|..... +.. ...+... ....+......+.. ......+.+-.+.+ ....+...+ ....
T Consensus 462 ~~-~~~~ivnp~~G~~~e~~~t~---ell~~~~---~~~~p~~~~~~W~~-~~~~e~~~~v~~~I-~~~k~i~~vtWHrk 532 (733)
T KOG0650|consen 462 VG-ECVLIVNPIFGDRLEVGPTK---ELLASAP---NESEPDAAVVTWSR-ASLDELEKGVCIVI-KHPKSIRQVTWHRK 532 (733)
T ss_pred ec-CceEEeCccccchhhhcchh---hhhhcCC---CccCCcccceeech-hhhhhhccceEEEE-ecCCccceeeeecC
Confidence 33 4466766665521110 000 0000000 00000000000000 00000010000000 000111111 1344
Q ss_pred CceEEEcccC--CCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEec
Q 017296 161 PKYMAVAGEQ--LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 238 (374)
Q Consensus 161 ~~~~~~~~~~--d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl 238 (374)
+.|++++... ...|.|..+...+....+. ...+..+.+ .|.|..+ .+++++ ...|+|||+
T Consensus 533 GDYlatV~~~~~~~~VliHQLSK~~sQ~PF~------------kskG~vq~v-~FHPs~p----~lfVaT-q~~vRiYdL 594 (733)
T KOG0650|consen 533 GDYLATVMPDSGNKSVLIHQLSKRKSQSPFR------------KSKGLVQRV-KFHPSKP----YLFVAT-QRSVRIYDL 594 (733)
T ss_pred CceEEEeccCCCcceEEEEecccccccCchh------------hcCCceeEE-EecCCCc----eEEEEe-ccceEEEeh
Confidence 5676655433 3457777766544322221 112333333 3555432 355555 468999999
Q ss_pred cCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeC
Q 017296 239 RNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGW 318 (374)
Q Consensus 239 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~ 318 (374)
... ..+..+.-....|..+++++.|.-++.++.|+.+..+|++..+-. .+.+..|...+++++||+-=.++++|+.
T Consensus 595 ~kq-elvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskP---yk~lr~H~~avr~Va~H~ryPLfas~sd 670 (733)
T KOG0650|consen 595 SKQ-ELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKP---YKTLRLHEKAVRSVAFHKRYPLFASGSD 670 (733)
T ss_pred hHH-HHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcch---hHHhhhhhhhhhhhhhccccceeeeecC
Confidence 652 223333334567899999999999999999999999999754321 2345567778999999999999999999
Q ss_pred CCeEEEEEc------cCC---eEEEEecccCCc----eEEEEEeCCCCEEEEEeCCCcEEEec
Q 017296 319 DRRVRIYNY------RKG---SALAILKYHHAT----CNAVSFSSDCKLMASASEDSTVALWE 368 (374)
Q Consensus 319 dg~v~iwd~------~~~---~~~~~~~~h~~~----v~~v~~sp~~~~las~s~D~~v~~W~ 368 (374)
||++.||.- ... -+++.+++|... |..+.|+|...+|+|+++|++||+|.
T Consensus 671 Dgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 671 DGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred CCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence 999999832 111 246788999865 89999999999999999999999983
No 77
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.9e-23 Score=188.79 Aligned_cols=243 Identities=19% Similarity=0.265 Sum_probs=185.2
Q ss_pred ecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeee-eeceeeeEEeccCCccccceeeeccccCeEEEEec
Q 017296 15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWV-HSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI 93 (374)
Q Consensus 15 ~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~ 93 (374)
.-+...|+++.|+++|.+|+.|-.+|.|.|||..+.+.+..+.+ |. ..+-++++.. ..+.+|+.|+.|..+|+
T Consensus 214 ~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~--~rvg~laW~~----~~lssGsr~~~I~~~dv 287 (484)
T KOG0305|consen 214 SFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHA--SRVGSLAWNS----SVLSSGSRDGKILNHDV 287 (484)
T ss_pred ecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcC--ceeEEEeccC----ceEEEecCCCcEEEEEE
Confidence 33489999999999999999999999999999988887777766 43 4577787763 67889999999999999
Q ss_pred CCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCe
Q 017296 94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSE 173 (374)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 173 (374)
+..+..-. .... ....
T Consensus 288 R~~~~~~~------~~~~----------------------------------------------------------H~qe 303 (484)
T KOG0305|consen 288 RISQHVVS------TLQG----------------------------------------------------------HRQE 303 (484)
T ss_pred ecchhhhh------hhhc----------------------------------------------------------ccce
Confidence 86521100 0000 0001
Q ss_pred EEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCcc
Q 017296 174 VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLE 253 (374)
Q Consensus 174 i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~ 253 (374)
|.-+ ...+ ....+++|+.|+.+.|||... ..+...+..|..
T Consensus 304 VCgL----------------------------------kws~----d~~~lASGgnDN~~~Iwd~~~-~~p~~~~~~H~a 344 (484)
T KOG0305|consen 304 VCGL----------------------------------KWSP----DGNQLASGGNDNVVFIWDGLS-PEPKFTFTEHTA 344 (484)
T ss_pred eeee----------------------------------EECC----CCCeeccCCCccceEeccCCC-ccccEEEeccce
Confidence 1100 0111 112588899999999999854 356777889999
Q ss_pred CeEEEEEecCCCce-EEE--ecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEe--CCCeEEEEEcc
Q 017296 254 PVLCLSIDESCNGG-ISG--GADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAG--WDRRVRIYNYR 328 (374)
Q Consensus 254 ~v~~~~~~~~~~~~-~s~--s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~--~dg~v~iwd~~ 328 (374)
.|..++|+|....+ |+| +.|+.|++||.... ... ..+. ....|.++.|+|..+-|+++. .+..|.||+..
T Consensus 345 AVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g--~~i--~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~p 419 (484)
T KOG0305|consen 345 AVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG--ARI--DSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYP 419 (484)
T ss_pred eeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC--cEe--cccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecc
Confidence 99999999865554 554 56999999998643 222 1121 235699999999987766554 46789999999
Q ss_pred CCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCC
Q 017296 329 KGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 329 ~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~ 371 (374)
+.+.+..+.+|...|..++++|||+.+++|+.|.|+|+|++++
T Consensus 420 s~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 420 SMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred ccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 9999999999999999999999999999999999999999986
No 78
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.3e-24 Score=176.30 Aligned_cols=215 Identities=21% Similarity=0.365 Sum_probs=164.1
Q ss_pred CCCCCCeEEeecCCCceeEEEEeC-CCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeecc
Q 017296 5 PPPPDPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG 83 (374)
Q Consensus 5 ~~~~~~~~~l~gH~~~V~~l~~~~-~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 83 (374)
+++..|++.++.|...|.++.|++ .+..++++|-|++||+|+...++.+.++.+|. ..|....|+|. ..+.++++|
T Consensus 91 ~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~--~~Iy~a~~sp~-~~nlfas~S 167 (311)
T KOG0277|consen 91 TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHN--SCIYQAAFSPH-IPNLFASAS 167 (311)
T ss_pred CCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCc--cEEEEEecCCC-CCCeEEEcc
Confidence 677889999999999999999997 45668888999999999999888888988876 45888889986 458999999
Q ss_pred ccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCce
Q 017296 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY 163 (374)
Q Consensus 84 ~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (374)
.|+++|+||++.... + +.+..++.
T Consensus 168 gd~~l~lwdvr~~gk---~-~~i~ah~~---------------------------------------------------- 191 (311)
T KOG0277|consen 168 GDGTLRLWDVRSPGK---F-MSIEAHNS---------------------------------------------------- 191 (311)
T ss_pred CCceEEEEEecCCCc---e-eEEEeccc----------------------------------------------------
Confidence 999999999975310 0 00000000
Q ss_pred EEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCC
Q 017296 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243 (374)
Q Consensus 164 ~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~ 243 (374)
-+.+.. | ..+ +...+++|+.|+.|+.||+++-..
T Consensus 192 Eil~cd-------w---------------------------------~ky------~~~vl~Tg~vd~~vr~wDir~~r~ 225 (311)
T KOG0277|consen 192 EILCCD-------W---------------------------------SKY------NHNVLATGGVDNLVRGWDIRNLRT 225 (311)
T ss_pred eeEeec-------c---------------------------------ccc------CCcEEEecCCCceEEEEehhhccc
Confidence 000000 0 001 112488899999999999998888
Q ss_pred ceeeeecCccCeEEEEEecCCC-ceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECC-CCCEEEEEeCCCe
Q 017296 244 PLTAMKVHLEPVLCLSIDESCN-GGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP-DSKIAATAGWDRR 321 (374)
Q Consensus 244 ~~~~~~~h~~~v~~~~~~~~~~-~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~ 321 (374)
|+..+.+|.-.|+.+.++|... .++++|.|=++|+||...... .......|...+..+.||+ ++.+||+.++|+.
T Consensus 226 pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds---~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~ 302 (311)
T KOG0277|consen 226 PLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDS---AIETVDHHTEFVCGLDWSLFDPGQVASTGWDEL 302 (311)
T ss_pred cceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchh---hhhhhhccceEEeccccccccCceeeecccccc
Confidence 8999999999999999987543 468999999999999864322 2233445666788888887 5778999999999
Q ss_pred EEEEEc
Q 017296 322 VRIYNY 327 (374)
Q Consensus 322 v~iwd~ 327 (374)
+.||+.
T Consensus 303 l~Vw~p 308 (311)
T KOG0277|consen 303 LYVWNP 308 (311)
T ss_pred eeeecc
Confidence 999973
No 79
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.92 E-value=2.2e-24 Score=189.28 Aligned_cols=250 Identities=20% Similarity=0.282 Sum_probs=180.5
Q ss_pred eeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCC-CCCCCCCceeeeecceeeeeeeeeccccccccccCC
Q 017296 53 VSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN-GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANE 131 (374)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (374)
+.++.+|.. ++.++-|.+. .+..|+|++.|+.|+||++-. +++ +++...|...+. ..
T Consensus 207 ~~~~~gH~k--gvsai~~fp~-~~hLlLS~gmD~~vklW~vy~~~~~-------lrtf~gH~k~Vr--------d~---- 264 (503)
T KOG0282|consen 207 SHNLSGHTK--GVSAIQWFPK-KGHLLLSGGMDGLVKLWNVYDDRRC-------LRTFKGHRKPVR--------DA---- 264 (503)
T ss_pred eeeccCCcc--ccchhhhccc-eeeEEEecCCCceEEEEEEecCcce-------ehhhhcchhhhh--------hh----
Confidence 455656653 4777777763 346889999999999999965 332 222222211000 00
Q ss_pred CCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEE
Q 017296 132 PKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQ 211 (374)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (374)
.+...+ .-+.+++.|+.+++||++||+++.++...... .++
T Consensus 265 -----------------------~~s~~g--~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~--------------~cv 305 (503)
T KOG0282|consen 265 -----------------------SFNNCG--TSFLSASFDRFLKLWDTETGQVLSRFHLDKVP--------------TCV 305 (503)
T ss_pred -----------------------hccccC--CeeeeeecceeeeeeccccceEEEEEecCCCc--------------eee
Confidence 011112 23557788999999999999999888643211 122
Q ss_pred eeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEE
Q 017296 212 AYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIK 291 (374)
Q Consensus 212 ~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~ 291 (374)
.|.|+. ...+++|..|+.|+.||+|++ ..++....|..+|..+.|-+.+..+++++.|+++++|+.+.... +.
T Consensus 306 kf~pd~---~n~fl~G~sd~ki~~wDiRs~-kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~---ik 378 (503)
T KOG0282|consen 306 KFHPDN---QNIFLVGGSDKKIRQWDIRSG-KVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVP---IK 378 (503)
T ss_pred ecCCCC---CcEEEEecCCCcEEEEeccch-HHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCcc---ch
Confidence 455543 236889999999999999974 45777788999999999999999999999999999999864321 11
Q ss_pred EeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeE---EEEecccC--CceEEEEEeCCCCEEEEEeCCCcEEE
Q 017296 292 KEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSA---LAILKYHH--ATCNAVSFSSDCKLMASASEDSTVAL 366 (374)
Q Consensus 292 ~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~---~~~~~~h~--~~v~~v~~sp~~~~las~s~D~~v~~ 366 (374)
.....+.....++..+|+++++++-+.|+.|.+|.....-+ -+.+.+|. +.-..+.|||||++|+||+.||.|.+
T Consensus 379 ~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~ 458 (503)
T KOG0282|consen 379 NIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNF 458 (503)
T ss_pred hhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEE
Confidence 22223345578899999999999999999999998754322 34577886 45667899999999999999999999
Q ss_pred ecCC
Q 017296 367 WELY 370 (374)
Q Consensus 367 W~~~ 370 (374)
||+.
T Consensus 459 wdwk 462 (503)
T KOG0282|consen 459 WDWK 462 (503)
T ss_pred eech
Confidence 9985
No 80
>PTZ00420 coronin; Provisional
Probab=99.92 E-value=3.9e-22 Score=188.33 Aligned_cols=234 Identities=20% Similarity=0.236 Sum_probs=152.4
Q ss_pred CCeEEeecCCCceeEEEEeCC-CCEEEEecCCCcEEEEeCcccc--------eeeeeeeeeceeeeEEeccCCcccccee
Q 017296 9 DPVAVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQHR--------TVSSSWVHSAAHGIVSVATGPSIGLNKV 79 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~-~~~l~s~s~D~~v~vWd~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~l 79 (374)
+++..+.||.++|.+|+|+|+ +.+|+|||.|++|+|||+.++. ++..+.+|. ..+.+++|++. +...+
T Consensus 65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~--~~V~sVaf~P~-g~~iL 141 (568)
T PTZ00420 65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHK--KKISIIDWNPM-NYYIM 141 (568)
T ss_pred ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCC--CcEEEEEECCC-CCeEE
Confidence 577899999999999999996 7899999999999999987542 122344554 34778888874 22356
Q ss_pred eeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCC
Q 017296 80 ISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAE 159 (374)
Q Consensus 80 ~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (374)
+|++.|++|++||+.+++.. ..+ .
T Consensus 142 aSgS~DgtIrIWDl~tg~~~----~~i------------~---------------------------------------- 165 (568)
T PTZ00420 142 CSSGFDSFVNIWDIENEKRA----FQI------------N---------------------------------------- 165 (568)
T ss_pred EEEeCCCeEEEEECCCCcEE----EEE------------e----------------------------------------
Confidence 78889999999998765210 000 0
Q ss_pred CCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEecc
Q 017296 160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239 (374)
Q Consensus 160 ~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~ 239 (374)
. . ..| .. ..+.++ + ..+++++.|+.|++||++
T Consensus 166 --------~-~-~~V-----------~S-----------------------lswspd---G-~lLat~s~D~~IrIwD~R 197 (568)
T PTZ00420 166 --------M-P-KKL-----------SS-----------------------LKWNIK---G-NLLSGTCVGKHMHIIDPR 197 (568)
T ss_pred --------c-C-CcE-----------EE-----------------------EEECCC---C-CEEEEEecCCEEEEEECC
Confidence 0 0 000 00 011111 1 146667788888888887
Q ss_pred CCCCceeeeecCccCeEEEE-----EecCCCceEEEecCC----eEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCC
Q 017296 240 NPGIPLTAMKVHLEPVLCLS-----IDESCNGGISGGADQ----KIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDS 310 (374)
Q Consensus 240 ~~~~~~~~~~~h~~~v~~~~-----~~~~~~~~~s~s~D~----~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 310 (374)
+ ...+..+.+|...+.... |.+++..++++|.|+ +|+|||++... .......+......+......+++
T Consensus 198 s-g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~-~pl~~~~ld~~~~~L~p~~D~~tg 275 (568)
T PTZ00420 198 K-QEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTT-SALVTMSIDNASAPLIPHYDESTG 275 (568)
T ss_pred C-CcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCC-CceEEEEecCCccceEEeeeCCCC
Confidence 6 345566777876544332 346667788888774 79999997432 222222233222333344456678
Q ss_pred CEEEEEeCCCeEEEEEccCCeEEE--EecccCCceEEEEEeCCC
Q 017296 311 KIAATAGWDRRVRIYNYRKGSALA--ILKYHHATCNAVSFSSDC 352 (374)
Q Consensus 311 ~~l~s~~~dg~v~iwd~~~~~~~~--~~~~h~~~v~~v~~sp~~ 352 (374)
.++++|+.|++|++|++..+.... .+. +..+..+++|.|+.
T Consensus 276 ~l~lsGkGD~tIr~~e~~~~~~~~l~~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 276 LIYLIGKGDGNCRYYQHSLGSIRKVNEYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred CEEEEEECCCeEEEEEccCCcEEeecccc-cCCCccceEEcccc
Confidence 899999999999999997764322 222 45678889999963
No 81
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.91 E-value=5.1e-22 Score=172.35 Aligned_cols=285 Identities=17% Similarity=0.273 Sum_probs=208.5
Q ss_pred CCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCC
Q 017296 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG 97 (374)
Q Consensus 18 ~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~ 97 (374)
...|.++...+....++||+.|..+.++|....+.+..+.+|... +..+.+.+ +...+++++.|..||+|......
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kk--i~~v~~~~--~~~~v~~aSad~~i~vws~~~~s 294 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKK--ITSVKFHK--DLDTVITASADEIIRVWSVPLSS 294 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceE--EEEEEecc--chhheeecCCcceEEeecccccc
Confidence 467888888877789999999999999999999989999888743 66777766 44578899999999999987542
Q ss_pred CCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEE
Q 017296 98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIW 177 (374)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vW 177 (374)
.. . ....+.. +.. .. ...+.+.|+ ++++.|+++-+.
T Consensus 295 ~~---~-~~~~h~~--------------------~V~--~l-----------------s~h~tgeYl-lsAs~d~~w~Fs 330 (506)
T KOG0289|consen 295 EP---T-SSRPHEE--------------------PVT--GL-----------------SLHPTGEYL-LSASNDGTWAFS 330 (506)
T ss_pred Cc---c-ccccccc--------------------cce--ee-----------------eeccCCcEE-EEecCCceEEEE
Confidence 11 0 0000000 000 00 001223454 456678999999
Q ss_pred ecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEE
Q 017296 178 DLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLC 257 (374)
Q Consensus 178 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~ 257 (374)
|++++.++...... ...-.+ ....|.|+ ...+.+|+.||.|+|||+.++. ....|.+|+.+|..
T Consensus 331 d~~~g~~lt~vs~~---------~s~v~~--ts~~fHpD----gLifgtgt~d~~vkiwdlks~~-~~a~Fpght~~vk~ 394 (506)
T KOG0289|consen 331 DISSGSQLTVVSDE---------TSDVEY--TSAAFHPD----GLIFGTGTPDGVVKIWDLKSQT-NVAKFPGHTGPVKA 394 (506)
T ss_pred EccCCcEEEEEeec---------ccccee--EEeeEcCC----ceEEeccCCCceEEEEEcCCcc-ccccCCCCCCceeE
Confidence 99999987766431 011111 12235543 3467889999999999998754 67789999999999
Q ss_pred EEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCC--eEEEE
Q 017296 258 LSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKG--SALAI 335 (374)
Q Consensus 258 ~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~--~~~~~ 335 (374)
++|..+|-++++++.|+.|++||++....-..+. + ....++.++.|.+.|++|+.++.|=+|.+++-.+. ..+..
T Consensus 395 i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~--l-~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~ 471 (506)
T KOG0289|consen 395 ISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQ--L-DEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKE 471 (506)
T ss_pred EEeccCceEEEEEecCCeEEEEEehhhcccceee--c-cccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeeh
Confidence 9999999999999999999999997543211111 1 12236899999999999999988888888765433 34566
Q ss_pred ecccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 336 LKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 336 ~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
+..|.+..+.+.|.-+.++++++|.|...+++.+
T Consensus 472 ~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 472 LADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred hhhcccccceeeecccceEEeeccchhheEEeec
Confidence 7778888999999999999999999999998765
No 82
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.1e-23 Score=181.46 Aligned_cols=251 Identities=16% Similarity=0.176 Sum_probs=171.3
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
+.+.++.||..+|..|.||||.++|++++.|..+++||..+|.....+. +..+..+.+++|.| |+.++++|+.|+++
T Consensus 260 kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~-~~~~~S~~sc~W~p--Dg~~~V~Gs~dr~i 336 (519)
T KOG0293|consen 260 KLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP-SGLGFSVSSCAWCP--DGFRFVTGSPDRTI 336 (519)
T ss_pred eeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcc-cCcCCCcceeEEcc--CCceeEecCCCCcE
Confidence 5688999999999999999999999999999999999999998766543 33344578888888 77899999999999
Q ss_pred EEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc
Q 017296 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (374)
..||.+.+.... .. .... ..+.. ...+ .+++++++++
T Consensus 337 ~~wdlDgn~~~~---W~----gvr~---------------------------~~v~d--------lait-~Dgk~vl~v~ 373 (519)
T KOG0293|consen 337 IMWDLDGNILGN---WE----GVRD---------------------------PKVHD--------LAIT-YDGKYVLLVT 373 (519)
T ss_pred EEecCCcchhhc---cc----cccc---------------------------ceeEE--------EEEc-CCCcEEEEEe
Confidence 999997642100 00 0000 00000 0011 2334555444
Q ss_pred cCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeee
Q 017296 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~ 248 (374)
.|..|++++.++......+.. ....+.+. . +.+..++++.-.+..|++||++.+ ..+..+
T Consensus 374 -~d~~i~l~~~e~~~dr~lise-----------~~~its~~---i----S~d~k~~LvnL~~qei~LWDl~e~-~lv~kY 433 (519)
T KOG0293|consen 374 -VDKKIRLYNREARVDRGLISE-----------EQPITSFS---I----SKDGKLALVNLQDQEIHLWDLEEN-KLVRKY 433 (519)
T ss_pred -cccceeeechhhhhhhccccc-----------cCceeEEE---E----cCCCcEEEEEcccCeeEEeecchh-hHHHHh
Confidence 578999998876432211111 00111111 1 112235666778999999999864 445667
Q ss_pred ecCccCe--EEEEEe-cCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECC-CCCEEEEEeCCCeEEE
Q 017296 249 KVHLEPV--LCLSID-ESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP-DSKIAATAGWDRRVRI 324 (374)
Q Consensus 249 ~~h~~~v--~~~~~~-~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~v~i 324 (374)
.||...- ..=+|- .+...+++||.|+.|.+|+...+ + +..++.+|...|.+++++| +..++|||+.||+|||
T Consensus 434 ~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg--k--ll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRI 509 (519)
T KOG0293|consen 434 FGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG--K--LLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRI 509 (519)
T ss_pred hcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC--c--eeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEE
Confidence 7887653 333442 23456799999999999987543 2 3456777888899999999 5667899999999999
Q ss_pred EEccC
Q 017296 325 YNYRK 329 (374)
Q Consensus 325 wd~~~ 329 (374)
|-...
T Consensus 510 Wg~~~ 514 (519)
T KOG0293|consen 510 WGPSD 514 (519)
T ss_pred ecCCc
Confidence 97654
No 83
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=2.2e-22 Score=177.01 Aligned_cols=280 Identities=18% Similarity=0.253 Sum_probs=193.3
Q ss_pred CCCceeEEEEeCCCC--EEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecC
Q 017296 17 HRASVTDVCFHQTKP--ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE 94 (374)
Q Consensus 17 H~~~V~~l~~~~~~~--~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~ 94 (374)
-..+|..|+|+|... +.+|+| ..|.+++..+-....++.-.. -.+.++.|.. ||..|+.|...|-|+++|+.
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S--~rvqly~~~~~~~~k~~srFk--~~v~s~~fR~--DG~LlaaGD~sG~V~vfD~k 98 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSS--VRVQLYSSVTRSVRKTFSRFK--DVVYSVDFRS--DGRLLAAGDESGHVKVFDMK 98 (487)
T ss_pred ccCcceeEecCCCCCCceEEecc--cEEEEEecchhhhhhhHHhhc--cceeEEEeec--CCeEEEccCCcCcEEEeccc
Confidence 357899999999653 455555 468899986654444332221 2356666765 67889999999999999965
Q ss_pred CCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeE
Q 017296 95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEV 174 (374)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 174 (374)
+....+ .+..+....|.. .+++. ...++++|++|+.+
T Consensus 99 ~r~iLR--~~~ah~apv~~~----------------------------------------~f~~~-d~t~l~s~sDd~v~ 135 (487)
T KOG0310|consen 99 SRVILR--QLYAHQAPVHVT----------------------------------------KFSPQ-DNTMLVSGSDDKVV 135 (487)
T ss_pred cHHHHH--HHhhccCceeEE----------------------------------------Eeccc-CCeEEEecCCCceE
Confidence 421000 000000001100 01111 23578899999999
Q ss_pred EEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccC
Q 017296 175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEP 254 (374)
Q Consensus 175 ~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~ 254 (374)
++||+.+......+..+. ....|.++ .+ .+...+++|+.||.||+||++........+ .|..|
T Consensus 136 k~~d~s~a~v~~~l~~ht----------DYVR~g~~---~~---~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~p 198 (487)
T KOG0310|consen 136 KYWDLSTAYVQAELSGHT----------DYVRCGDI---SP---ANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCP 198 (487)
T ss_pred EEEEcCCcEEEEEecCCc----------ceeEeecc---cc---CCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCc
Confidence 999999987644554321 12222222 11 122358899999999999998754444444 48999
Q ss_pred eEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEE
Q 017296 255 VLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALA 334 (374)
Q Consensus 255 v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~ 334 (374)
|..+.+-|.+..+++++ .+.+|+||+-.+ ...+ ..+..|...|+|+.+..++.-|+||+.||.|++||..+-+.+.
T Consensus 199 Ve~vl~lpsgs~iasAg-Gn~vkVWDl~~G--~qll-~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~ 274 (487)
T KOG0310|consen 199 VESVLALPSGSLIASAG-GNSVKVWDLTTG--GQLL-TSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVH 274 (487)
T ss_pred eeeEEEcCCCCEEEEcC-CCeEEEEEecCC--ceeh-hhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEE
Confidence 99999998887666664 567999999633 2222 2233366789999999999999999999999999988888777
Q ss_pred EecccCCceEEEEEeCCCCEEEEEeCCCcEEEe
Q 017296 335 ILKYHHATCNAVSFSSDCKLMASASEDSTVALW 367 (374)
Q Consensus 335 ~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W 367 (374)
.+. -+++|.+++.+|+++.++.|-.||.+.+=
T Consensus 275 s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 275 SWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred eee-cccceeeEEecCCCceEEEecccceeeee
Confidence 775 67899999999999999999999998764
No 84
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.91 E-value=1e-21 Score=173.04 Aligned_cols=248 Identities=24% Similarity=0.422 Sum_probs=174.8
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
++...+.+|...+..+.|++++++|++++.|+.+++||..+++.+..+..|. ..+.++.+.+ +++.+++++.|+.+
T Consensus 42 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~--~~i~~~~~~~--~~~~~~~~~~~~~i 117 (289)
T cd00200 42 ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHT--SYVSSVAFSP--DGRILSSSSRDKTI 117 (289)
T ss_pred CcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccC--CcEEEEEEcC--CCCEEEEecCCCeE
Confidence 4667888999999999999999999999999999999998877666666554 2477777776 34677777889999
Q ss_pred EEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc
Q 017296 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (374)
++||+.+++.. ..+....... .+.. +.+. .. +++++
T Consensus 118 ~~~~~~~~~~~----~~~~~~~~~i--------------------~~~~------------------~~~~-~~-~l~~~ 153 (289)
T cd00200 118 KVWDVETGKCL----TTLRGHTDWV--------------------NSVA------------------FSPD-GT-FVASS 153 (289)
T ss_pred EEEECCCcEEE----EEeccCCCcE--------------------EEEE------------------EcCc-CC-EEEEE
Confidence 99999864311 0000000000 0000 0011 12 44555
Q ss_pred cCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeee
Q 017296 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~ 248 (374)
..++.+++||+++++....+..+. ....++ .+.++ + ..+++++.||.|++||++. ......+
T Consensus 154 ~~~~~i~i~d~~~~~~~~~~~~~~----------~~i~~~---~~~~~---~-~~l~~~~~~~~i~i~d~~~-~~~~~~~ 215 (289)
T cd00200 154 SQDGTIKLWDLRTGKCVATLTGHT----------GEVNSV---AFSPD---G-EKLLSSSSDGTIKLWDLST-GKCLGTL 215 (289)
T ss_pred cCCCcEEEEEccccccceeEecCc----------cccceE---EECCC---c-CEEEEecCCCcEEEEECCC-Cceecch
Confidence 568999999999877655554211 011111 12221 2 2577888899999999975 3456667
Q ss_pred ecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 017296 249 KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYN 326 (374)
Q Consensus 249 ~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd 326 (374)
..|..++.++.+++++..+++++.|+.+++||++... . ...+..+...+.+++|+|+++++++++.|+.+++|+
T Consensus 216 ~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~--~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 216 RGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGE--C--VQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred hhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCce--e--EEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 6888899999999987777777779999999986432 1 223335666799999999999999999999999995
No 85
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.91 E-value=1e-22 Score=186.34 Aligned_cols=350 Identities=19% Similarity=0.261 Sum_probs=210.0
Q ss_pred eEEeecCCCceeEEEEeCCCCEEEEec--CCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccc--cC
Q 017296 11 VAVLRGHRASVTDVCFHQTKPILFAGT--TGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGR--DG 86 (374)
Q Consensus 11 ~~~l~gH~~~V~~l~~~~~~~~l~s~s--~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~--D~ 86 (374)
-+.+..|+++++|++|+++|+++++|- ..-.+|||++.....+..+..|. .++.+++|++ ...+++|.|. |.
T Consensus 71 ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHK--Y~vtcvaFsp--~~kyvvSVGsQHDM 146 (1080)
T KOG1408|consen 71 SHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHK--YNVTCVAFSP--GNKYVVSVGSQHDM 146 (1080)
T ss_pred hheecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhcc--ccceeeeecC--CCcEEEeeccccce
Confidence 345667899999999999999999986 44569999998877777776665 5688999988 4577887664 66
Q ss_pred eEEEEecCCCCCCCCCce---------------eeeecceee--eeeeeeccccccccccC------CCC----------
Q 017296 87 TVKCWDIENGGLSSNPSL---------------TIKTNSYHF--CKLSLVKEPYANAKQAN------EPK---------- 133 (374)
Q Consensus 87 ~vrvwd~~~~~~~~~~~~---------------~~~~~~~~~--~~~~~~~~~~~~~~~~~------~~~---------- 133 (374)
.|-+||.+.+......++ .+...+.|. +-+....+-.+.....+ ...
T Consensus 147 IVnv~dWr~N~~~asnkiss~Vsav~fsEdgSYfvT~gnrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg 226 (1080)
T KOG1408|consen 147 IVNVNDWRVNSSGASNKISSVVSAVAFSEDGSYFVTSGNRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACG 226 (1080)
T ss_pred EEEhhhhhhcccccccccceeEEEEEEccCCceeeeeeeeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhc
Confidence 788998765422211111 000111111 11111111000000000 000
Q ss_pred ------ccc---------ccccCceeecCCCCCCCC-CCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCC-
Q 017296 134 ------DCY---------EREVGETVDTDSLCDSKD-DVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGS- 196 (374)
Q Consensus 134 ------~~~---------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~- 196 (374)
.++ ++..+...+....+.... ..-.-..++++ .|-.+++|++++.++-.-+.+++.....+.
T Consensus 227 ~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~r~I~-cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d 305 (1080)
T KOG1408|consen 227 VGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSSRLIA-CGCAKGMVRLFNPETLDYAGTLPRSHALGSD 305 (1080)
T ss_pred CcccccceEEEecccceeeechhhhhhhhhhhhccccceeeeecceEE-EeeccceeeecCcchhhhccccccccccccc
Confidence 000 000000000000000000 00011234444 455579999999887665556554322111
Q ss_pred --------CCcCCCC---CcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCc--eeeeecCccCeEEEEEec-
Q 017296 197 --------PNFSSKG---RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP--LTAMKVHLEPVLCLSIDE- 262 (374)
Q Consensus 197 --------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~--~~~~~~h~~~v~~~~~~~- 262 (374)
+.++... ..-+++. .|-+. ...+..-++|..|.+||++....+ ...+-+|...|..+..-|
T Consensus 306 ~a~~~q~~~~~s~~~~a~fPD~IA~-~Fdet----~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~ 380 (1080)
T KOG1408|consen 306 TANLSQPEPKNSESSPAIFPDAIAC-QFDET----TDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPC 380 (1080)
T ss_pred hhhcccccccccccCcccCCceeEE-EecCC----CceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccc
Confidence 1111000 0112222 13211 124677899999999999875432 344557887777765522
Q ss_pred -----C-----CCceEEEecCCeEEEEEcCCCCCeEEEEEe---------------------------------eecCCC
Q 017296 263 -----S-----CNGGISGGADQKIVLYNLDHSTGSCVIKKE---------------------------------INLERP 299 (374)
Q Consensus 263 -----~-----~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~---------------------------------~~~~~~ 299 (374)
. .-.|.++|.|++|||||++..+....++.. .-..+-
T Consensus 381 nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~ 460 (1080)
T KOG1408|consen 381 NVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRF 460 (1080)
T ss_pred cccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCccc
Confidence 1 124789999999999999863322221100 001234
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeC---CCCEEEEEeCCCcEEEecCC
Q 017296 300 GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSS---DCKLMASASEDSTVALWELY 370 (374)
Q Consensus 300 ~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp---~~~~las~s~D~~v~~W~~~ 370 (374)
+++++++||++++||+|..-|+++|+++...+.+-.+.+|+..|.++.|+- ..++|||+|.|..|.++|.-
T Consensus 461 G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~ 534 (1080)
T KOG1408|consen 461 GFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK 534 (1080)
T ss_pred ceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc
Confidence 689999999999999999999999999998888888999999999999983 35799999999999999873
No 86
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.91 E-value=1.1e-21 Score=179.28 Aligned_cols=300 Identities=18% Similarity=0.260 Sum_probs=200.9
Q ss_pred CeEEeecCCCceeEEEEeCCCC---EEEEecCCCcEEEEeCcccc--eeeeeeeeeceeeeEEeccCCccccceeee-cc
Q 017296 10 PVAVLRGHRASVTDVCFHQTKP---ILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLNKVIS-QG 83 (374)
Q Consensus 10 ~~~~l~gH~~~V~~l~~~~~~~---~l~s~s~D~~v~vWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-~~ 83 (374)
-..+|.||+++|+|+++-|... +++||+.|+.|++|.+...+ ++..+.+|. ..++++.. ...+.+ .+
T Consensus 46 i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~----~~~~cv~a---~~~~~~~~~ 118 (764)
T KOG1063|consen 46 IVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHC----KECVCVVA---RSSVMTCKA 118 (764)
T ss_pred eEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcc----eeEEEEEe---eeeEEEeec
Confidence 4678899999999999988776 89999999999999997433 344554432 33333322 123333 37
Q ss_pred ccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCce
Q 017296 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY 163 (374)
Q Consensus 84 ~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (374)
.|+++.+||.+..+.. ......+ .. ..... -|. ...+..+.+
T Consensus 119 ad~~v~vw~~~~~e~~-----~~~~~rf-------~~-k~~ip-------LcL------------------~~~~~~~~~ 160 (764)
T KOG1063|consen 119 ADGTVSVWDKQQDEVF-----LLAVLRF-------EI-KEAIP-------LCL------------------AALKNNKTF 160 (764)
T ss_pred cCceEEEeecCCCcee-----eehheeh-------hh-hhHhh-------HHH------------------hhhccCCcE
Confidence 8999999999433210 0000000 00 00000 000 011233457
Q ss_pred EEEcccCCCeEEEEecCCCc--eeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCC
Q 017296 164 MAVAGEQLSEVEIWDLNTAE--RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 241 (374)
Q Consensus 164 ~~~~~~~d~~i~vWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~ 241 (374)
+++.|+.+..|.++.-.+++ ....+.++ ..-.+.+. |.... .+...++++|+|.+||||.+.-.
T Consensus 161 lla~Ggs~~~v~~~s~~~d~f~~v~el~GH--------~DWIrsl~-----f~~~~-~~~~~laS~SQD~yIRiW~i~~~ 226 (764)
T KOG1063|consen 161 LLACGGSKFVVDLYSSSADSFARVAELEGH--------TDWIRSLA-----FARLG-GDDLLLASSSQDRYIRIWRIVLG 226 (764)
T ss_pred EEEecCcceEEEEeccCCcceeEEEEeecc--------chhhhhhh-----hhccC-CCcEEEEecCCceEEEEEEEEec
Confidence 78888888888888654433 34444432 22222221 11111 12346889999999999988532
Q ss_pred C--------------------Cce----------eeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEE
Q 017296 242 G--------------------IPL----------TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIK 291 (374)
Q Consensus 242 ~--------------------~~~----------~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~ 291 (374)
+ ... ..+.||.+.|.++.++|.+..++++|.|.++.+|.-+..+|.+...
T Consensus 227 ~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~ 306 (764)
T KOG1063|consen 227 DDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDV 306 (764)
T ss_pred CCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEE
Confidence 2 011 1245899999999999999899999999999999887777765433
Q ss_pred ---EeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCe---EEEEecccCCceEEEEEeCCCCEEEEEeCCCcEE
Q 017296 292 ---KEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGS---ALAILKYHHATCNAVSFSSDCKLMASASEDSTVA 365 (374)
Q Consensus 292 ---~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~---~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~ 365 (374)
.++.....+..+..|+|++..+++-+.-|-.++|-.++.. +...+.||...|..|+|+|.|++|.|+|.|.|-|
T Consensus 307 vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTR 386 (764)
T KOG1063|consen 307 VRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTR 386 (764)
T ss_pred EEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEecccccee
Confidence 3344444578899999999999999999999999844432 2335679999999999999999999999999999
Q ss_pred Eec
Q 017296 366 LWE 368 (374)
Q Consensus 366 ~W~ 368 (374)
++-
T Consensus 387 lFa 389 (764)
T KOG1063|consen 387 LFA 389 (764)
T ss_pred eec
Confidence 964
No 87
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=3.3e-21 Score=154.17 Aligned_cols=256 Identities=16% Similarity=0.206 Sum_probs=172.6
Q ss_pred ecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccce--e---eeeeeeeceeeeEEeccCCccccceeeecc-ccCeE
Q 017296 15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT--V---SSSWVHSAAHGIVSVATGPSIGLNKVISQG-RDGTV 88 (374)
Q Consensus 15 ~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~D~~v 88 (374)
+-|++.|+|.+|+|.|.+++|||.|++|++--.+...+ . ..+.-|.....-+++--.+..++..|+|++ .|..|
T Consensus 86 khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~i 165 (350)
T KOG0641|consen 86 KHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKI 165 (350)
T ss_pred cccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceE
Confidence 46999999999999999999999999999876543221 1 122234333233333345555567788765 67777
Q ss_pred EEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc
Q 017296 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (374)
-+=|...|+.. .....+..|+-++. .+ ...++++|
T Consensus 166 y~tdc~~g~~~----~a~sghtghilaly-------------------sw----------------------n~~m~~sg 200 (350)
T KOG0641|consen 166 YITDCGRGQGF----HALSGHTGHILALY-------------------SW----------------------NGAMFASG 200 (350)
T ss_pred EEeecCCCCcc----eeecCCcccEEEEE-------------------Ee----------------------cCcEEEcc
Confidence 77777766321 11111111111110 00 03468899
Q ss_pred cCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcc-eeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceee
Q 017296 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGM-CMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA 247 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~ 247 (374)
++|++|++||++-..++.++...... .++ ..++.....+ +.+. ++++|..|.+..+||++- +.+++.
T Consensus 201 sqdktirfwdlrv~~~v~~l~~~~~~---------~glessavaav~vd-psgr-ll~sg~~dssc~lydirg-~r~iq~ 268 (350)
T KOG0641|consen 201 SQDKTIRFWDLRVNSCVNTLDNDFHD---------GGLESSAVAAVAVD-PSGR-LLASGHADSSCMLYDIRG-GRMIQR 268 (350)
T ss_pred CCCceEEEEeeeccceeeeccCcccC---------CCcccceeEEEEEC-CCcc-eeeeccCCCceEEEEeeC-Cceeee
Confidence 99999999999988877776532111 110 1111112112 2233 688899999999999985 567888
Q ss_pred eecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEc
Q 017296 248 MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNY 327 (374)
Q Consensus 248 ~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~ 327 (374)
+..|...|.|+.|+|...+++++|.|..|++=|+...-...+.......|.+.+-.+.|+|+.--+++.+.|+++.+|-+
T Consensus 269 f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 269 FHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWAL 348 (350)
T ss_pred eCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEecc
Confidence 88899999999999999999999999999999997542222222223345666777899999888999999999999965
No 88
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=1.8e-21 Score=161.34 Aligned_cols=296 Identities=19% Similarity=0.270 Sum_probs=197.0
Q ss_pred EEeecCCCceeEEEEeC-CCCEEEEecCCCcEEEEeCcccce------e-ee----eeeeece--eeeEEeccCCccccc
Q 017296 12 AVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRT------V-SS----SWVHSAA--HGIVSVATGPSIGLN 77 (374)
Q Consensus 12 ~~l~gH~~~V~~l~~~~-~~~~l~s~s~D~~v~vWd~~~~~~------~-~~----~~~~~~~--~~~~~~~~~~~~~~~ 77 (374)
-..+-|.+.|+.|...+ .|++++||+.||.|.|||++.... + .. -..|... ..|..+.|-|. |.-
T Consensus 37 d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~-DtG 115 (397)
T KOG4283|consen 37 DFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPI-DTG 115 (397)
T ss_pred ceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeee-cCc
Confidence 34567999999999986 789999999999999999865320 0 00 0113222 23556666664 334
Q ss_pred eeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCC
Q 017296 78 KVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVP 157 (374)
Q Consensus 78 ~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (374)
.+.|++-|.++|+||..+-+.. .. |.. . .+..+....+
T Consensus 116 mFtssSFDhtlKVWDtnTlQ~a----~~-----F~m---------------------------e------~~VYshamSp 153 (397)
T KOG4283|consen 116 MFTSSSFDHTLKVWDTNTLQEA----VD-----FKM---------------------------E------GKVYSHAMSP 153 (397)
T ss_pred eeecccccceEEEeecccceee----EE-----eec---------------------------C------ceeehhhcCh
Confidence 7889999999999999763210 00 000 0 0000111111
Q ss_pred CCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEe
Q 017296 158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 237 (374)
Q Consensus 158 ~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwd 237 (374)
...+..++++|..+-.|++=|+.+|...-.+.++ +.-++++. ..|. ....+++|+.||.||+||
T Consensus 154 ~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGH------------r~~vlaV~-Wsp~---~e~vLatgsaDg~irlWD 217 (397)
T KOG4283|consen 154 MAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGH------------RDGVLAVE-WSPS---SEWVLATGSADGAIRLWD 217 (397)
T ss_pred hhhcceEEEEecCCCcEEEEeccCCcceeeeccc------------cCceEEEE-eccC---ceeEEEecCCCceEEEEE
Confidence 1223567888999999999999999876666543 11223332 2221 223578899999999999
Q ss_pred ccCCCCceee--------------eecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCC----
Q 017296 238 IRNPGIPLTA--------------MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERP---- 299 (374)
Q Consensus 238 l~~~~~~~~~--------------~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~---- 299 (374)
+|...-++.. ...|...++.+++..++.++++.+.|..+++|+...+........++ .+..
T Consensus 218 iRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~-~~n~~~~~ 296 (397)
T KOG4283|consen 218 IRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPI-IHNQTTSF 296 (397)
T ss_pred eecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccc-cccccccc
Confidence 9864222222 33567789999999899999999999999999987543322111111 1111
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 300 GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 300 ~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
.+. +. +-+...++--=.++++.++++.+++++..+..|-..|.+.++.|+=+...+++.|+.+..|..
T Consensus 297 ~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 297 AVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred eEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 111 11 223333443345689999999999999999999999999999999999999999999999965
No 89
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.90 E-value=7.1e-23 Score=176.58 Aligned_cols=246 Identities=16% Similarity=0.257 Sum_probs=179.1
Q ss_pred CCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCe
Q 017296 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (374)
Q Consensus 8 ~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~ 87 (374)
...+.+|.|-.++|+.+.|.+++..+++++.|+.+++||....+...++.+|... +.++-+.- ....+++|+.|.+
T Consensus 209 ~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdk--Vt~ak~~~--~~~~vVsgs~DRt 284 (459)
T KOG0288|consen 209 SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDK--VTAAKFKL--SHSRVVSGSADRT 284 (459)
T ss_pred hhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccc--eeeehhhc--cccceeeccccch
Confidence 3477889999999999999999999999999999999999999999999898744 66665544 2345999999999
Q ss_pred EEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEc
Q 017296 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (374)
Q Consensus 88 vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (374)
+|+||+..+.+...+. +. ..|.++... ...+++
T Consensus 285 iK~WDl~k~~C~kt~l-------------------------~~--S~cnDI~~~--------------------~~~~~S 317 (459)
T KOG0288|consen 285 IKLWDLQKAYCSKTVL-------------------------PG--SQCNDIVCS--------------------ISDVIS 317 (459)
T ss_pred hhhhhhhhhheecccc-------------------------cc--ccccceEec--------------------ceeeee
Confidence 9999998764322110 00 011111100 123567
Q ss_pred ccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceee
Q 017296 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA 247 (374)
Q Consensus 168 ~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~ 247 (374)
|-.|++||+||.+++.+....+.+.. +.++ +.+.+...+++.+.|.++.+.|++... ...+
T Consensus 318 gH~DkkvRfwD~Rs~~~~~sv~~gg~-------------vtSl-----~ls~~g~~lLsssRDdtl~viDlRt~e-I~~~ 378 (459)
T KOG0288|consen 318 GHFDKKVRFWDIRSADKTRSVPLGGR-------------VTSL-----DLSMDGLELLSSSRDDTLKVIDLRTKE-IRQT 378 (459)
T ss_pred cccccceEEEeccCCceeeEeecCcc-------------eeeE-----eeccCCeEEeeecCCCceeeeeccccc-EEEE
Confidence 77899999999999887766653211 1111 112334468888999999999998743 2333
Q ss_pred eecC----ccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEE
Q 017296 248 MKVH----LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVR 323 (374)
Q Consensus 248 ~~~h----~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~ 323 (374)
+... ....+.+.|+|++.++++||.||.|.+|++.+ +++............|++++|+|-|.++++++.++.+.
T Consensus 379 ~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~t--gKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~ 456 (459)
T KOG0288|consen 379 FSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFT--GKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVT 456 (459)
T ss_pred eeccccccccccceeEECCCCceeeeccCCCcEEEEEccC--ceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceE
Confidence 3221 23488899999999999999999999999864 44443333333334799999999999999999999999
Q ss_pred EE
Q 017296 324 IY 325 (374)
Q Consensus 324 iw 325 (374)
+|
T Consensus 457 lW 458 (459)
T KOG0288|consen 457 LW 458 (459)
T ss_pred ec
Confidence 99
No 90
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.2e-21 Score=160.65 Aligned_cols=191 Identities=17% Similarity=0.314 Sum_probs=149.0
Q ss_pred ceEEEcccCCCeEEEEecCCCcee---EEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEec
Q 017296 162 KYMAVAGEQLSEVEIWDLNTAERC---TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 238 (374)
Q Consensus 162 ~~~~~~~~~d~~i~vWd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl 238 (374)
..++++++.|++||+|++..+... ..+... +.-..+. .++.| .+. +|++||.|.++-||.=
T Consensus 27 g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~-------hkrsVRs-----vAwsp---~g~-~La~aSFD~t~~Iw~k 90 (312)
T KOG0645|consen 27 GVILASCGTDKAVRIWSTSSGDSWTCKTVLDDG-------HKRSVRS-----VAWSP---HGR-YLASASFDATVVIWKK 90 (312)
T ss_pred ceEEEeecCCceEEEEecCCCCcEEEEEecccc-------chheeee-----eeecC---CCc-EEEEeeccceEEEeec
Confidence 347889999999999999864322 222111 1101111 12322 233 6899999999999975
Q ss_pred cCCC-CceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEe
Q 017296 239 RNPG-IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAG 317 (374)
Q Consensus 239 ~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~ 317 (374)
.... ..+.++.||...|.|++|++++.+||++|.|.++-+|.++... .......++.|...|..+.|+|...+|+|++
T Consensus 91 ~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~dedd-Efec~aVL~~HtqDVK~V~WHPt~dlL~S~S 169 (312)
T KOG0645|consen 91 EDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDD-EFECIAVLQEHTQDVKHVIWHPTEDLLFSCS 169 (312)
T ss_pred CCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCC-cEEEEeeeccccccccEEEEcCCcceeEEec
Confidence 4222 3577889999999999999999999999999999999987432 2333345667878899999999999999999
Q ss_pred CCCeEEEEEccCC---eEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 318 WDRRVRIYNYRKG---SALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 318 ~dg~v~iwd~~~~---~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
.|.+|++|.-.++ ++.+++.+|.+.|++++|+|.|..|++++.|++|+||..
T Consensus 170 YDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~ 224 (312)
T KOG0645|consen 170 YDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRL 224 (312)
T ss_pred cCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeee
Confidence 9999999987633 568899999999999999999999999999999999983
No 91
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.1e-21 Score=162.58 Aligned_cols=247 Identities=15% Similarity=0.164 Sum_probs=170.7
Q ss_pred eeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCc
Q 017296 63 HGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE 142 (374)
Q Consensus 63 ~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (374)
..+.++.|+. ++..+++++.|.+++++|..+|.+.. .+....+......
T Consensus 15 ~~i~sl~fs~--~G~~litss~dDsl~LYd~~~g~~~~----ti~skkyG~~~~~------------------------- 63 (311)
T KOG1446|consen 15 GKINSLDFSD--DGLLLITSSEDDSLRLYDSLSGKQVK----TINSKKYGVDLAC------------------------- 63 (311)
T ss_pred CceeEEEecC--CCCEEEEecCCCeEEEEEcCCCceee----EeecccccccEEE-------------------------
Confidence 4477888877 67899999999999999999885321 1100000000000
Q ss_pred eeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCce
Q 017296 143 TVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFV 222 (374)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (374)
++......+..+...|.+||+-++.+.+.++-+.++. .....+++ .| ...
T Consensus 64 -------------Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~--------~~V~sL~~-----sP----~~d 113 (311)
T KOG1446|consen 64 -------------FTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHK--------KRVNSLSV-----SP----KDD 113 (311)
T ss_pred -------------EecCCceEEEccCCCCCceEEEEeecCceEEEcCCCC--------ceEEEEEe-----cC----CCC
Confidence 0011112233344457899999999999988887542 11111111 11 223
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeee-cCCCCe
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEIN-LERPGI 301 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~-~~~~~v 301 (374)
.+++++.|++|++||+|.... .-.+ +...-...++||+|..+|.+...+.|+|||++......-....+. ......
T Consensus 114 ~FlS~S~D~tvrLWDlR~~~c-qg~l--~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew 190 (311)
T KOG1446|consen 114 TFLSSSLDKTVRLWDLRVKKC-QGLL--NLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEW 190 (311)
T ss_pred eEEecccCCeEEeeEecCCCC-ceEE--ecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccce
Confidence 689999999999999996443 2222 233344578999999999998888999999975422221122222 223457
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCce---EEEEEeCCCCEEEEEeCCCcEEEecCCCCC
Q 017296 302 SGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATC---NAVSFSSDCKLMASASEDSTVALWELYPPH 373 (374)
Q Consensus 302 ~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v---~~v~~sp~~~~las~s~D~~v~~W~~~~~~ 373 (374)
..+.|||||++|+.+...+.+.+.|.-+|..+.++..+.+.- .+..|+||++++.+|+.||+|.+|++..++
T Consensus 191 ~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~ 265 (311)
T KOG1446|consen 191 TDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGK 265 (311)
T ss_pred eeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCc
Confidence 789999999999999999999999999999888888776432 567899999999999999999999997765
No 92
>PTZ00420 coronin; Provisional
Probab=99.90 E-value=7.6e-21 Score=179.64 Aligned_cols=235 Identities=14% Similarity=0.184 Sum_probs=156.5
Q ss_pred EecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeee
Q 017296 35 AGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFC 114 (374)
Q Consensus 35 s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~ 114 (374)
+|+.++.+++|+......+..+.+|. ..|.+++|++. +++.|+||+.|++||+||+.++..... .+
T Consensus 49 gGG~~gvI~L~~~~r~~~v~~L~gH~--~~V~~lafsP~-~~~lLASgS~DgtIrIWDi~t~~~~~~---~i-------- 114 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKPPVIKLKGHT--SSILDLQFNPC-FSEILASGSEDLTIRVWEIPHNDESVK---EI-------- 114 (568)
T ss_pred CCCceeEEEeeecCCCceEEEEcCCC--CCEEEEEEcCC-CCCEEEEEeCCCeEEEEECCCCCcccc---cc--------
Confidence 36778899999987766677777775 35888999873 257899999999999999976421000 00
Q ss_pred eeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccC
Q 017296 115 KLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCG 194 (374)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~ 194 (374)
.. ......+ ..+.|
T Consensus 115 -----~~----------------------------------------p~~~L~g-H~~~V-------------------- 128 (568)
T PTZ00420 115 -----KD----------------------------------------PQCILKG-HKKKI-------------------- 128 (568)
T ss_pred -----cc----------------------------------------ceEEeec-CCCcE--------------------
Confidence 00 0000000 00000
Q ss_pred CCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCC
Q 017296 195 GSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQ 274 (374)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~ 274 (374)
.+ ..+.|+ +...+++++.|++|++||+++.. ....+. |...|.+++|++++..+++++.|+
T Consensus 129 -----------~s---Vaf~P~---g~~iLaSgS~DgtIrIWDl~tg~-~~~~i~-~~~~V~SlswspdG~lLat~s~D~ 189 (568)
T PTZ00420 129 -----------SI---IDWNPM---NYYIMCSSGFDSFVNIWDIENEK-RAFQIN-MPKKLSSLKWNIKGNLLSGTCVGK 189 (568)
T ss_pred -----------EE---EEECCC---CCeEEEEEeCCCeEEEEECCCCc-EEEEEe-cCCcEEEEEECCCCCEEEEEecCC
Confidence 00 112221 22245788999999999998643 333443 567899999999999999999999
Q ss_pred eEEEEEcCCCCCeEEEEEeeecCCCCe-----EEEEECCCCCEEEEEeCCC----eEEEEEccC-CeEEEEec--ccCCc
Q 017296 275 KIVLYNLDHSTGSCVIKKEINLERPGI-----SGTSIRPDSKIAATAGWDR----RVRIYNYRK-GSALAILK--YHHAT 342 (374)
Q Consensus 275 ~i~lwd~~~~~~~~~~~~~~~~~~~~v-----~~~~~sp~~~~l~s~~~dg----~v~iwd~~~-~~~~~~~~--~h~~~ 342 (374)
.|++||++... .. ..+..|...+ ....|++++++|++++.|+ +|+|||++. ++++..+. .+.+.
T Consensus 190 ~IrIwD~Rsg~--~i--~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~ 265 (568)
T PTZ00420 190 HMHIIDPRKQE--IA--SSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAP 265 (568)
T ss_pred EEEEEECCCCc--EE--EEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccc
Confidence 99999997543 22 2344554433 2335679999999988774 799999985 55665443 33344
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 343 CNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 343 v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
+......++|.++++|+.|++||+|++..+
T Consensus 266 L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 266 LIPHYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred eEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 434444567899999999999999998643
No 93
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=3.4e-21 Score=160.56 Aligned_cols=260 Identities=20% Similarity=0.300 Sum_probs=173.8
Q ss_pred ecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccc----eeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEE
Q 017296 15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR----TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC 90 (374)
Q Consensus 15 ~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrv 90 (374)
.+|.+-|.++.|...|+.++|+|.|++|+|||+.... +......|. ..+..+.+.+..-|+.+++++.|+++++
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~--~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHD--GSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecC--CcEEEEEecCccccceEEEEecCCceee
Confidence 4899999999999999999999999999999965432 233333444 3477788876656789999999999999
Q ss_pred EecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccC
Q 017296 91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ 170 (374)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (374)
|.=+.-... .. +..++-.+.-.
T Consensus 88 WEE~~~~~~--------~~--------------------------------------------------~~~Wv~~ttl~ 109 (361)
T KOG2445|consen 88 WEEQEKSEE--------AH--------------------------------------------------GRRWVRRTTLV 109 (361)
T ss_pred eeecccccc--------cc--------------------------------------------------cceeEEEEEee
Confidence 985321000 00 00000000000
Q ss_pred CCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCc-----e
Q 017296 171 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP-----L 245 (374)
Q Consensus 171 d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~-----~ 245 (374)
|..-.|.|+ .|.|. ..| ..+++++.||+||||+.-.+... .
T Consensus 110 DsrssV~DV--------------------------------~FaP~-hlG-LklA~~~aDG~lRIYEA~dp~nLs~W~Lq 155 (361)
T KOG2445|consen 110 DSRSSVTDV--------------------------------KFAPK-HLG-LKLAAASADGILRIYEAPDPMNLSQWTLQ 155 (361)
T ss_pred cCCcceeEE--------------------------------Eecch-hcc-eEEEEeccCcEEEEEecCCccccccchhh
Confidence 000000000 11111 111 24677777888888776433110 0
Q ss_pred e-------eeecCccCeEEEEEecC---CCceEEEecC-----CeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCC-
Q 017296 246 T-------AMKVHLEPVLCLSIDES---CNGGISGGAD-----QKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPD- 309 (374)
Q Consensus 246 ~-------~~~~h~~~v~~~~~~~~---~~~~~s~s~D-----~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~- 309 (374)
. +...+..+..|+.+++. .+.++.|+.+ +.+++|.......++....++..+.+.|+.++|.|+
T Consensus 156 ~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~ 235 (361)
T KOG2445|consen 156 HEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNI 235 (361)
T ss_pred hhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecccc
Confidence 0 11135667888888643 2345555554 489999887666567666677778889999999996
Q ss_pred ---CCEEEEEeCCCeEEEEEccCC--------------------eEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEE
Q 017296 310 ---SKIAATAGWDRRVRIYNYRKG--------------------SALAILKYHHATCNAVSFSSDCKLMASASEDSTVAL 366 (374)
Q Consensus 310 ---~~~l~s~~~dg~v~iwd~~~~--------------------~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~ 366 (374)
-.+||+|+.|| |+||.++.. +.+..+..|...|+.+.|+-.|..|+|.|.||+||+
T Consensus 236 Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRL 314 (361)
T KOG2445|consen 236 GRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRL 314 (361)
T ss_pred CCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeee
Confidence 23689999999 999999731 235567889999999999999999999999999999
Q ss_pred ecC
Q 017296 367 WEL 369 (374)
Q Consensus 367 W~~ 369 (374)
|..
T Consensus 315 Wka 317 (361)
T KOG2445|consen 315 WKA 317 (361)
T ss_pred hhh
Confidence 965
No 94
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.90 E-value=3.5e-22 Score=180.87 Aligned_cols=284 Identities=21% Similarity=0.291 Sum_probs=180.2
Q ss_pred eEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeee--eeeeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSS--SWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 11 ~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
+..+..|...|..+.|-|-...|++++-|.++++||+.+++.... +.+|.. .+.+++|.+. +...|++|+.|+.|
T Consensus 93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~--SvkS~cf~~~-n~~vF~tGgRDg~i 169 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTG--SVKSECFMPT-NPAVFCTGGRDGEI 169 (720)
T ss_pred hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeeccccc--ccchhhhccC-CCcceeeccCCCcE
Confidence 345567999999999999667899999999999999998877655 667764 3667777764 45789999999999
Q ss_pred EEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc
Q 017296 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (374)
.|||++........ .+|. .. +... ++.. ...+. ....-.+..+.+.
T Consensus 170 llWD~R~n~~d~~e---------~~~~-------~~-----------~~~~-n~~p-tpskp-----~~kr~~k~kA~s~ 215 (720)
T KOG0321|consen 170 LLWDCRCNGVDALE---------EFDN-------RI-----------YGRH-NTAP-TPSKP-----LKKRIRKWKAASN 215 (720)
T ss_pred EEEEEeccchhhHH---------HHhh-------hh-----------hccc-cCCC-CCCch-----hhccccccccccC
Confidence 99999764210000 0000 00 0000 0000 00000 0000001111111
Q ss_pred cCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEec-CCcEEEEeccCCCC----
Q 017296 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE-DGSILVWDIRNPGI---- 243 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~-dg~i~iwdl~~~~~---- 243 (374)
. | ... +.+..| ++...|++++. |+.|++|||+++..
T Consensus 216 t----i-----------------------------~ss-vTvv~f-----kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ 256 (720)
T KOG0321|consen 216 T----I-----------------------------FSS-VTVVLF-----KDESTLASAGAADSTIKVWDLRKNYTAYRQ 256 (720)
T ss_pred c----e-----------------------------eee-eEEEEE-----eccceeeeccCCCcceEEEeeccccccccc
Confidence 1 0 000 111111 11225777665 99999999987532
Q ss_pred -ceeeeec--C---ccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCC-CC-eEEEEECCCCCEEEE
Q 017296 244 -PLTAMKV--H---LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLER-PG-ISGTSIRPDSKIAAT 315 (374)
Q Consensus 244 -~~~~~~~--h---~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~-~~-v~~~~~sp~~~~l~s 315 (374)
+....+. | ...+.++..|..|.++...+.|++|.+||+........ .....+. .. -..-..+||+.+++|
T Consensus 257 ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~--~~~sg~~~~sf~vks~lSpd~~~l~S 334 (720)
T KOG0321|consen 257 EPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPV--AEFSGKLNSSFYVKSELSPDDCSLLS 334 (720)
T ss_pred CCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCch--hhccCcccceeeeeeecCCCCceEec
Confidence 2222222 3 23688888899888888888899999999975432211 1111111 11 123457899999999
Q ss_pred EeCCCeEEEEEccCCeE-EEEecccCCceEEEEEeCCCC-EEEEEeCCCcEEEecCCCC
Q 017296 316 AGWDRRVRIYNYRKGSA-LAILKYHHATCNAVSFSSDCK-LMASASEDSTVALWELYPP 372 (374)
Q Consensus 316 ~~~dg~v~iwd~~~~~~-~~~~~~h~~~v~~v~~sp~~~-~las~s~D~~v~~W~~~~~ 372 (374)
|++|..+.+|.+...+. ...+.+|.-.|.+++|.|..- -+||+|+|.++++|++.+.
T Consensus 335 gSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 335 GSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred cCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 99999999999987653 456789999999999998543 6788899999999999653
No 95
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.89 E-value=1.3e-20 Score=175.54 Aligned_cols=339 Identities=17% Similarity=0.241 Sum_probs=208.2
Q ss_pred CCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCe
Q 017296 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (374)
Q Consensus 8 ~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~ 87 (374)
.+.+.++++|.+.|+++.=+|-=..++-|-.+|+|.++|+..++.+.++... ...|..++|..+ +...+++|+..|.
T Consensus 192 ~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d--~g~VtslSFrtD-G~p~las~~~~G~ 268 (910)
T KOG1539|consen 192 GKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQD--WGRVTSLSFRTD-GNPLLASGRSNGD 268 (910)
T ss_pred CcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEcc--ccceeEEEeccC-CCeeEEeccCCce
Confidence 3688999999999999999998889999999999999999999888887532 356888998863 2347788888999
Q ss_pred EEEEecCCCCCCCCCceeeeecceeeeeeeeec-cccccccccCCCCc--ccccccCce---eecCCCCCCC--CCCC-C
Q 017296 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVK-EPYANAKQANEPKD--CYEREVGET---VDTDSLCDSK--DDVP-A 158 (374)
Q Consensus 88 vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~--~~~~-~ 158 (374)
+-+||++..+.... ..+.+..+. ....++. .|.. . ..+.+.. .+.++.++- .......++. .... -
T Consensus 269 m~~wDLe~kkl~~v-~~nah~~sv--~~~~fl~~epVl-~-ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy 343 (910)
T KOG1539|consen 269 MAFWDLEKKKLINV-TRNAHYGSV--TGATFLPGEPVL-V-TAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFY 343 (910)
T ss_pred EEEEEcCCCeeeee-eeccccCCc--ccceecCCCceE-e-eccCCCceeEEEeeCCCCcchheeeccCCCCCchheeee
Confidence 99999986533210 000110000 0000000 0000 0 0000000 000000000 0000000000 0000 0
Q ss_pred CCCceEEEcccCCC-----------------------------------------------------------------e
Q 017296 159 EGPKYMAVAGEQLS-----------------------------------------------------------------E 173 (374)
Q Consensus 159 ~~~~~~~~~~~~d~-----------------------------------------------------------------~ 173 (374)
..+.+.+.++..|+ .
T Consensus 344 ~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~ 423 (910)
T KOG1539|consen 344 GSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRS 423 (910)
T ss_pred ccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcce
Confidence 01112222333333 4
Q ss_pred EEEEecCCCceeE-EeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeee---e
Q 017296 174 VEIWDLNTAERCT-RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM---K 249 (374)
Q Consensus 174 i~vWd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~---~ 249 (374)
++.|+.+....-. .+... .+.. ....+.++. . +.+....+.|+..|.|.+|++.+ +.-...+ .
T Consensus 424 ~~tW~~~n~~~G~~~L~~~------~~~~-~~~~~~av~-v----s~CGNF~~IG~S~G~Id~fNmQS-Gi~r~sf~~~~ 490 (910)
T KOG1539|consen 424 AYTWNFRNKTSGRHVLDPK------RFKK-DDINATAVC-V----SFCGNFVFIGYSKGTIDRFNMQS-GIHRKSFGDSP 490 (910)
T ss_pred EEEEeccCcccccEEecCc------cccc-cCcceEEEE-E----eccCceEEEeccCCeEEEEEccc-CeeecccccCc
Confidence 4444444332211 11100 0000 111122211 1 12223467799999999999976 3334444 4
Q ss_pred cCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEE-------------------------------------EE
Q 017296 250 VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVI-------------------------------------KK 292 (374)
Q Consensus 250 ~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~-------------------------------------~~ 292 (374)
.|..+|+.++.|...+.+++++.||.+++||+....-...+ ..
T Consensus 491 ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR 570 (910)
T KOG1539|consen 491 AHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVR 570 (910)
T ss_pred cccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhH
Confidence 79999999999998888999999999999999754310000 01
Q ss_pred eeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCC-CcEEEec
Q 017296 293 EINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASED-STVALWE 368 (374)
Q Consensus 293 ~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D-~~v~~W~ 368 (374)
++..|...++.++|||||++|++++.|++||+||+.++.++..+. -..++.++.|+|+|.+|||+..| .-|++|.
T Consensus 571 ~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 571 EFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred HhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 223577789999999999999999999999999999999887764 56688999999999999999988 7899994
No 96
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=6.2e-20 Score=164.17 Aligned_cols=273 Identities=14% Similarity=0.106 Sum_probs=170.8
Q ss_pred CCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCcccccee-eeccccCeEEEEecCCCCCCCCCceeeee
Q 017296 30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKV-ISQGRDGTVKCWDIENGGLSSNPSLTIKT 108 (374)
Q Consensus 30 ~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~D~~vrvwd~~~~~~~~~~~~~~~~ 108 (374)
+.+++|++.|+.+++||+.+++.+..+..+. .+..+++++ +++.+ ++++.|++|++||+.+++... .+..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~---~~~~l~~~~--dg~~l~~~~~~~~~v~~~d~~~~~~~~----~~~~ 71 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ---RPRGITLSK--DGKLLYVCASDSDTIQVIDLATGEVIG----TLPS 71 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCC---CCCceEECC--CCCEEEEEECCCCeEEEEECCCCcEEE----eccC
Confidence 3578899999999999998888777665442 244566766 45555 677889999999998764211 0000
Q ss_pred cceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEe
Q 017296 109 NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRL 188 (374)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~ 188 (374)
... .. .+ .+ .++.+.+++++..++.+++||+++++.+..+
T Consensus 72 -------------~~~-------~~---------~~----------~~-~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~ 111 (300)
T TIGR03866 72 -------------GPD-------PE---------LF----------AL-HPNGKILYIANEDDNLVTVIDIETRKVLAEI 111 (300)
T ss_pred -------------CCC-------cc---------EE----------EE-CCCCCEEEEEcCCCCeEEEEECCCCeEEeEe
Confidence 000 00 00 01 1223455666667889999999987766555
Q ss_pred ccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCC-cEEEEeccCCCCceeeeecCccCeEEEEEecCCCce
Q 017296 189 HQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG-SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGG 267 (374)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg-~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 267 (374)
.... ....+ .+.++ + ..+++++.++ .+..||.+.. ....... .......+.|++++..+
T Consensus 112 ~~~~-----------~~~~~---~~~~d---g-~~l~~~~~~~~~~~~~d~~~~-~~~~~~~-~~~~~~~~~~s~dg~~l 171 (300)
T TIGR03866 112 PVGV-----------EPEGM---AVSPD---G-KIVVNTSETTNMAHFIDTKTY-EIVDNVL-VDQRPRFAEFTADGKEL 171 (300)
T ss_pred eCCC-----------CcceE---EECCC---C-CEEEEEecCCCeEEEEeCCCC-eEEEEEE-cCCCccEEEECCCCCEE
Confidence 3210 00111 12222 2 2466666554 5677898653 2222222 23345778899988877
Q ss_pred EE-EecCCeEEEEEcCCCCCeEEEEEeee-cC--CCCeEEEEECCCCCEEEE-EeCCCeEEEEEccCCeEEEEecccCCc
Q 017296 268 IS-GGADQKIVLYNLDHSTGSCVIKKEIN-LE--RPGISGTSIRPDSKIAAT-AGWDRRVRIYNYRKGSALAILKYHHAT 342 (374)
Q Consensus 268 ~s-~s~D~~i~lwd~~~~~~~~~~~~~~~-~~--~~~v~~~~~sp~~~~l~s-~~~dg~v~iwd~~~~~~~~~~~~h~~~ 342 (374)
+. +..++.|++||++.......+..... .+ ......++|+|++++++. .+.++++.+||+++++....+. +...
T Consensus 172 ~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~ 250 (300)
T TIGR03866 172 WVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQR 250 (300)
T ss_pred EEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCC
Confidence 54 45699999999975421111111100 00 112346889999998544 4557789999999888776553 4557
Q ss_pred eEEEEEeCCCCEEEEE-eCCCcEEEecCCCC
Q 017296 343 CNAVSFSSDCKLMASA-SEDSTVALWELYPP 372 (374)
Q Consensus 343 v~~v~~sp~~~~las~-s~D~~v~~W~~~~~ 372 (374)
+.+++|+|+|++|+++ +.++.|++||+...
T Consensus 251 ~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~ 281 (300)
T TIGR03866 251 VWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL 281 (300)
T ss_pred cceEEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence 8999999999998876 56999999998654
No 97
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=1.5e-21 Score=170.57 Aligned_cols=244 Identities=18% Similarity=0.277 Sum_probs=167.7
Q ss_pred ecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecC
Q 017296 15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE 94 (374)
Q Consensus 15 ~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~ 94 (374)
++|.+.|.+++.++||++|+||+.|..|.||+..+.+.+..+.+|... |.+++|-- +.+.+++++.|++|++|+++
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~--V~~L~fr~--gt~~lys~s~Drsvkvw~~~ 274 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGA--VSSLAFRK--GTSELYSASADRSVKVWSID 274 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccc--eeeeeeec--CccceeeeecCCceEEEehh
Confidence 599999999999999999999999999999999999999888888754 77777754 44689999999999999997
Q ss_pred CCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeE
Q 017296 95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEV 174 (374)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 174 (374)
.-.+ +.+...|...+ .. ...-...-.+.+|..|+++
T Consensus 275 ~~s~-------vetlyGHqd~v---------------------------~~----------IdaL~reR~vtVGgrDrT~ 310 (479)
T KOG0299|consen 275 QLSY-------VETLYGHQDGV---------------------------LG----------IDALSRERCVTVGGRDRTV 310 (479)
T ss_pred HhHH-------HHHHhCCccce---------------------------ee----------echhcccceEEecccccee
Confidence 5321 11111111100 00 0000112245677789999
Q ss_pred EEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeee-cC--
Q 017296 175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK-VH-- 251 (374)
Q Consensus 175 ~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~-~h-- 251 (374)
++|++.....+...... +..-|+ .|+.+ .++++||.||.|.+|++.+ ..|+.+.+ .|
T Consensus 311 rlwKi~eesqlifrg~~-----------~sidcv---~~In~-----~HfvsGSdnG~IaLWs~~K-Kkplf~~~~AHgv 370 (479)
T KOG0299|consen 311 RLWKIPEESQLIFRGGE-----------GSIDCV---AFIND-----EHFVSGSDNGSIALWSLLK-KKPLFTSRLAHGV 370 (479)
T ss_pred EEEeccccceeeeeCCC-----------CCeeeE---EEecc-----cceeeccCCceEEEeeecc-cCceeEeeccccc
Confidence 99999766544433211 111122 23322 2699999999999999965 33444322 12
Q ss_pred ---------ccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCE-EEEEeCCCe
Q 017296 252 ---------LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKI-AATAGWDRR 321 (374)
Q Consensus 252 ---------~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~s~~~dg~ 321 (374)
...|++++.-+....+++||.+|.+|||-++..-.+..+..++.. ...|++++|+++|+. ++..+....
T Consensus 371 ~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~-~GfVNsl~f~~sgk~ivagiGkEhR 449 (479)
T KOG0299|consen 371 IPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSL-VGFVNSLAFSNSGKRIVAGIGKEHR 449 (479)
T ss_pred cCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeeccc-ccEEEEEEEccCCCEEEEecccccc
Confidence 127889998887778999999999999998765434333444432 356999999999994 555566666
Q ss_pred EEEEEc
Q 017296 322 VRIYNY 327 (374)
Q Consensus 322 v~iwd~ 327 (374)
+-.|-.
T Consensus 450 lGRW~~ 455 (479)
T KOG0299|consen 450 LGRWWC 455 (479)
T ss_pred cceeeE
Confidence 666643
No 98
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.4e-21 Score=177.45 Aligned_cols=189 Identities=16% Similarity=0.256 Sum_probs=148.5
Q ss_pred EEEcccCCCeEEEEecCCC--ceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCC
Q 017296 164 MAVAGEQLSEVEIWDLNTA--ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 241 (374)
Q Consensus 164 ~~~~~~~d~~i~vWd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~ 241 (374)
.+++++.|-+|++|+...+ -+..++.. +....-|++.. ......+++|+-|+.|.+||+...
T Consensus 87 tlIS~SsDtTVK~W~~~~~~~~c~stir~----------H~DYVkcla~~------ak~~~lvaSgGLD~~IflWDin~~ 150 (735)
T KOG0308|consen 87 TLISASSDTTVKVWNAHKDNTFCMSTIRT----------HKDYVKCLAYI------AKNNELVASGGLDRKIFLWDINTG 150 (735)
T ss_pred ceEEecCCceEEEeecccCcchhHhhhhc----------ccchheeeeec------ccCceeEEecCCCccEEEEEccCc
Confidence 3567778899999998765 23333332 22333344331 112236889999999999999743
Q ss_pred C---------Cceeeee-cCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCC
Q 017296 242 G---------IPLTAMK-VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSK 311 (374)
Q Consensus 242 ~---------~~~~~~~-~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 311 (374)
. .+...+. ++.++|.+++-.+.+..+++|+..+-+++||.+..... -.+.+|...|+.+..++||.
T Consensus 151 ~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~ki----mkLrGHTdNVr~ll~~dDGt 226 (735)
T KOG0308|consen 151 TATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKI----MKLRGHTDNVRVLLVNDDGT 226 (735)
T ss_pred chhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccce----eeeeccccceEEEEEcCCCC
Confidence 1 1222233 78899999999999888999999999999998643322 23457889999999999999
Q ss_pred EEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 312 IAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 312 ~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
.++||+.||+|++||+...+++.++..|.+.|+++..+|+=..+.+|+.|+.|..=++..|
T Consensus 227 ~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 227 RLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred eEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 9999999999999999999999999999999999999999999999999999998887654
No 99
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1e-20 Score=177.97 Aligned_cols=247 Identities=18% Similarity=0.257 Sum_probs=180.8
Q ss_pred ecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCccc-ceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEec
Q 017296 15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH-RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI 93 (374)
Q Consensus 15 ~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~ 93 (374)
..|+.+-+.|+|.++|++|.+++.|+.|++|+.... +...++..+. ..+.+++.. .++|++++.|++|.++.+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g--~~v~~ia~~----s~~f~~~s~~~tv~~y~f 83 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISG--ELVSSIACY----SNHFLTGSEQNTVLRYKF 83 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccC--ceeEEEeec----ccceEEeeccceEEEeeC
Confidence 369999999999999999999999999999997655 3333332222 235555543 368999999999999998
Q ss_pred CCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCe
Q 017296 94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSE 173 (374)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 173 (374)
.++.... .+
T Consensus 84 ps~~~~~--iL--------------------------------------------------------------------- 92 (933)
T KOG1274|consen 84 PSGEEDT--IL--------------------------------------------------------------------- 92 (933)
T ss_pred CCCCccc--ee---------------------------------------------------------------------
Confidence 8763110 00
Q ss_pred EEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCcc
Q 017296 174 VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLE 253 (374)
Q Consensus 174 i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~ 253 (374)
.. |..+.+.. .+.. +...++.|++|-.|++-++.... ....+.+|..
T Consensus 93 ------------~R-----------ftlp~r~~-----~v~g----~g~~iaagsdD~~vK~~~~~D~s-~~~~lrgh~a 139 (933)
T KOG1274|consen 93 ------------AR-----------FTLPIRDL-----AVSG----SGKMIAAGSDDTAVKLLNLDDSS-QEKVLRGHDA 139 (933)
T ss_pred ------------ee-----------eeccceEE-----EEec----CCcEEEeecCceeEEEEeccccc-hheeecccCC
Confidence 00 00000000 0110 11257788889999998886543 3567889999
Q ss_pred CeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEe---eecC-CCCeEEEEECCCCCEEEEEeCCCeEEEEEccC
Q 017296 254 PVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKE---INLE-RPGISGTSIRPDSKIAATAGWDRRVRIYNYRK 329 (374)
Q Consensus 254 ~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~---~~~~-~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~ 329 (374)
+|.++.++|++..+|+.+.||.+++||++.......+... .... ..-+..++|+|++..++..+.|++|++|+...
T Consensus 140 pVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~ 219 (933)
T KOG1274|consen 140 PVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKG 219 (933)
T ss_pred ceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCC
Confidence 9999999999999999999999999999765433332221 1111 22356789999988999999999999999998
Q ss_pred CeEEEEecc--cCCceEEEEEeCCCCEEEEEeCCCcEEEecCCC
Q 017296 330 GSALAILKY--HHATCNAVSFSSDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 330 ~~~~~~~~~--h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~ 371 (374)
.+.+..++. |...+..+.|+|+|+|||+++.||.|.|||++.
T Consensus 220 we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 220 WELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred ceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 888777753 444589999999999999999999999999973
No 100
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=6e-21 Score=159.57 Aligned_cols=246 Identities=17% Similarity=0.326 Sum_probs=161.1
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
.|+..+..|.++|++|+. ++.+++|||.|-+|+|||+.....+..+-.|. ..+.++.|.+....++|+||+.||.|
T Consensus 34 ~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~Ha--gsitaL~F~~~~S~shLlS~sdDG~i 109 (362)
T KOG0294|consen 34 KPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHA--GSITALKFYPPLSKSHLLSGSDDGHI 109 (362)
T ss_pred eccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccc--cceEEEEecCCcchhheeeecCCCcE
Confidence 468889999999999998 68899999999999999998777777776664 45888888875544589999999999
Q ss_pred EEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc
Q 017296 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (374)
.+|+...=. .++....|... +.. ....|.+ + ++.+-
T Consensus 110 ~iw~~~~W~-------~~~slK~H~~~---------------------------Vt~--------lsiHPS~-K-LALsV 145 (362)
T KOG0294|consen 110 IIWRVGSWE-------LLKSLKAHKGQ---------------------------VTD--------LSIHPSG-K-LALSV 145 (362)
T ss_pred EEEEcCCeE-------Eeeeecccccc---------------------------cce--------eEecCCC-c-eEEEE
Confidence 999986411 11111111000 000 0111222 3 45555
Q ss_pred cCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeee
Q 017296 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~ 248 (374)
+.|+.++.||+-+|+.-..+.-... .++
T Consensus 146 g~D~~lr~WNLV~Gr~a~v~~L~~~-------------------------------------at~--------------- 173 (362)
T KOG0294|consen 146 GGDQVLRTWNLVRGRVAFVLNLKNK-------------------------------------ATL--------------- 173 (362)
T ss_pred cCCceeeeehhhcCccceeeccCCc-------------------------------------cee---------------
Confidence 6689999999988764222210000 000
Q ss_pred ecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcc
Q 017296 249 KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYR 328 (374)
Q Consensus 249 ~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~ 328 (374)
+.|++.+.+++.++.+ .|-+|.++... ++ .++... ..+.++.|- ++.++++|+.|+.|++||..
T Consensus 174 ---------v~w~~~Gd~F~v~~~~-~i~i~q~d~A~---v~-~~i~~~-~r~l~~~~l-~~~~L~vG~d~~~i~~~D~d 237 (362)
T KOG0294|consen 174 ---------VSWSPQGDHFVVSGRN-KIDIYQLDNAS---VF-REIENP-KRILCATFL-DGSELLVGGDNEWISLKDTD 237 (362)
T ss_pred ---------eEEcCCCCEEEEEecc-EEEEEecccHh---Hh-hhhhcc-ccceeeeec-CCceEEEecCCceEEEeccC
Confidence 3333333333333322 24445443210 00 011111 123344444 45578889999999999999
Q ss_pred CCeEEEEecccCCceEEEEE--eCCCCEEEEEeCCCcEEEecCC
Q 017296 329 KGSALAILKYHHATCNAVSF--SSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 329 ~~~~~~~~~~h~~~v~~v~~--sp~~~~las~s~D~~v~~W~~~ 370 (374)
+..++..+.+|+++|-.+.+ .|++.+|+|+|.||.|++|+++
T Consensus 238 s~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 238 SDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred CCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcc
Confidence 89999999999999999984 4788899999999999999985
No 101
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=4.4e-21 Score=168.88 Aligned_cols=242 Identities=21% Similarity=0.340 Sum_probs=165.4
Q ss_pred cCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCC
Q 017296 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN 95 (374)
Q Consensus 16 gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~ 95 (374)
--++.|++++|-.||++|+.|++.|.|+|+|..+.--+..+..|.. .+..+-|++. +...+++|+.|+.+++||+.+
T Consensus 66 rFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~a--pv~~~~f~~~-d~t~l~s~sDd~v~k~~d~s~ 142 (487)
T KOG0310|consen 66 RFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQA--PVHVTKFSPQ-DNTMLVSGSDDKVVKYWDLST 142 (487)
T ss_pred hhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccC--ceeEEEeccc-CCeEEEecCCCceEEEEEcCC
Confidence 3467899999999999999999999999999544223455666654 3556667764 457888999999999999987
Q ss_pred CCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEE
Q 017296 96 GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVE 175 (374)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 175 (374)
+.. .-....|-. .+... ++ .+...-++++|++|++||
T Consensus 143 a~v-------~~~l~~htD----------------------------YVR~g-------~~-~~~~~hivvtGsYDg~vr 179 (487)
T KOG0310|consen 143 AYV-------QAELSGHTD----------------------------YVRCG-------DI-SPANDHIVVTGSYDGKVR 179 (487)
T ss_pred cEE-------EEEecCCcc----------------------------eeEee-------cc-ccCCCeEEEecCCCceEE
Confidence 521 000011100 00000 01 111234788999999999
Q ss_pred EEecCCC-ceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccC
Q 017296 176 IWDLNTA-ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEP 254 (374)
Q Consensus 176 vWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~ 254 (374)
+||+++. .....+... .....++ +.+. + ..++++ ..+.|++||+..+++.+..+..|...
T Consensus 180 l~DtR~~~~~v~elnhg---------~pVe~vl-----~lps---g-s~iasA-gGn~vkVWDl~~G~qll~~~~~H~Kt 240 (487)
T KOG0310|consen 180 LWDTRSLTSRVVELNHG---------CPVESVL-----ALPS---G-SLIASA-GGNSVKVWDLTTGGQLLTSMFNHNKT 240 (487)
T ss_pred EEEeccCCceeEEecCC---------CceeeEE-----EcCC---C-CEEEEc-CCCeEEEEEecCCceehhhhhcccce
Confidence 9999987 444444321 1111111 2221 2 235554 45689999998666555555559999
Q ss_pred eEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEc
Q 017296 255 VLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNY 327 (374)
Q Consensus 255 v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~ 327 (374)
|+|+.+..++..|+++|.|+.+++||+... + ....++.. .+|.+++++|+++.++.|..||.+.+-+.
T Consensus 241 VTcL~l~s~~~rLlS~sLD~~VKVfd~t~~--K--vv~s~~~~-~pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 241 VTCLRLASDSTRLLSGSLDRHVKVFDTTNY--K--VVHSWKYP-GPVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred EEEEEeecCCceEeecccccceEEEEccce--E--EEEeeecc-cceeeEEecCCCceEEEecccceeeeehh
Confidence 999999888889999999999999996432 2 22333333 46999999999999999999999987643
No 102
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.88 E-value=1.2e-20 Score=173.04 Aligned_cols=300 Identities=15% Similarity=0.252 Sum_probs=196.8
Q ss_pred eEEeecCCCceeEEEEeCC-----------CCEEEEecCCCcEEEEeCccc---ceeee-------------------e-
Q 017296 11 VAVLRGHRASVTDVCFHQT-----------KPILFAGTTGGELRIWDTVQH---RTVSS-------------------S- 56 (374)
Q Consensus 11 ~~~l~gH~~~V~~l~~~~~-----------~~~l~s~s~D~~v~vWd~~~~---~~~~~-------------------~- 56 (374)
...+--|...|+.|.--|- ..-++|+|.|++||+||+..+ +..+. +
T Consensus 362 ~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~ 441 (1080)
T KOG1408|consen 362 CSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMH 441 (1080)
T ss_pred eeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhh
Confidence 3455668888888776551 224889999999999998642 11000 0
Q ss_pred ----ee--------eeceeeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccc
Q 017296 57 ----WV--------HSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYA 124 (374)
Q Consensus 57 ----~~--------~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (374)
.+ .....++.+++.++ ++++|++|-.-|++|++++++-+... .+..+...+-
T Consensus 442 d~~~~~fdka~~s~~d~r~G~R~~~vSp--~gqhLAsGDr~GnlrVy~Lq~l~~~~----~~eAHesEil---------- 505 (1080)
T KOG1408|consen 442 DASAGIFDKALVSTCDSRFGFRALAVSP--DGQHLASGDRGGNLRVYDLQELEYTC----FMEAHESEIL---------- 505 (1080)
T ss_pred hccCCcccccchhhcCcccceEEEEECC--CcceecccCccCceEEEEehhhhhhh----heecccceeE----------
Confidence 00 01113578888877 78999999999999999997643211 1111111110
Q ss_pred cccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCce-eEEeccCccCCCCCcCCCC
Q 017296 125 NAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAER-CTRLHQNSCGGSPNFSSKG 203 (374)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~-~~~~~~~~~~~~~~~~~~~ 203 (374)
|.+.... .-. .-++++++.|+.|+|+|+..... +.++..+ +..
T Consensus 506 ----------cLeyS~p----------------~~~-~kLLASasrdRlIHV~Dv~rny~l~qtld~H--------Sss- 549 (1080)
T KOG1408|consen 506 ----------CLEYSFP----------------VLT-NKLLASASRDRLIHVYDVKRNYDLVQTLDGH--------SSS- 549 (1080)
T ss_pred ----------EEeecCc----------------hhh-hHhhhhccCCceEEEEecccccchhhhhccc--------ccc-
Confidence 1111000 001 12567888999999999987643 3344322 111
Q ss_pred CcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCC----ceeeeecCccCeEEEEEecCCCceEEEecCCeEEEE
Q 017296 204 RGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI----PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLY 279 (374)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lw 279 (374)
+....|... .+...+++.+.|..|.+=-..+.+. +..+...-...+..|.++|....+++++.|..|++|
T Consensus 550 ----ITsvKFa~~--gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif 623 (1080)
T KOG1408|consen 550 ----ITSVKFACN--GLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIF 623 (1080)
T ss_pred ----eeEEEEeec--CCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEE
Confidence 111223221 1112477777887765422221110 111111223568889999999999999999999999
Q ss_pred EcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEe
Q 017296 280 NLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASAS 359 (374)
Q Consensus 280 d~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s 359 (374)
|++.......++.. ..|....-.+...|.|-|||+.+.|+++.++|..+++++.++.+|.+.|+.+.|.+|.+.|+|.+
T Consensus 624 ~i~sgKq~k~FKgs-~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvs 702 (1080)
T KOG1408|consen 624 DIESGKQVKSFKGS-RDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVS 702 (1080)
T ss_pred eccccceeeeeccc-ccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeec
Confidence 99754322222221 22334566788999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEecC
Q 017296 360 EDSTVALWEL 369 (374)
Q Consensus 360 ~D~~v~~W~~ 369 (374)
.||.|.+|.+
T Consensus 703 gDgCIFvW~l 712 (1080)
T KOG1408|consen 703 GDGCIFVWKL 712 (1080)
T ss_pred CCceEEEEEC
Confidence 9999999987
No 103
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.88 E-value=1.3e-21 Score=172.74 Aligned_cols=243 Identities=21% Similarity=0.310 Sum_probs=176.1
Q ss_pred cCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccc---eeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEe
Q 017296 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR---TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (374)
Q Consensus 16 gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd 92 (374)
.|-.-|-++..++..+.++||+. |-|+|||+.... ++..+..-.....+.+|-+.+ +++.|++||.-.++-|||
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~p--dgrtLivGGeastlsiWD 493 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLP--DGRTLIVGGEASTLSIWD 493 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecC--CCceEEeccccceeeeee
Confidence 58888999999999999999996 789999985321 122221122233466666655 678888888888888888
Q ss_pred cCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCC
Q 017296 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS 172 (374)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 172 (374)
+..... .++.. .+......++.+.
T Consensus 494 LAapTp------rikae----------------------------------------------ltssapaCyALa~---- 517 (705)
T KOG0639|consen 494 LAAPTP------RIKAE----------------------------------------------LTSSAPACYALAI---- 517 (705)
T ss_pred ccCCCc------chhhh----------------------------------------------cCCcchhhhhhhc----
Confidence 875421 11000 0000000001111
Q ss_pred eEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCc
Q 017296 173 EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL 252 (374)
Q Consensus 173 ~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~ 252 (374)
+.+....++++.||.|.|||+++ ...+..+++|+
T Consensus 518 ---------------------------------------------spDakvcFsccsdGnI~vwDLhn-q~~VrqfqGht 551 (705)
T KOG0639|consen 518 ---------------------------------------------SPDAKVCFSCCSDGNIAVWDLHN-QTLVRQFQGHT 551 (705)
T ss_pred ---------------------------------------------CCccceeeeeccCCcEEEEEccc-ceeeecccCCC
Confidence 11122356778899999999987 45678899999
Q ss_pred cCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeE
Q 017296 253 EPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSA 332 (374)
Q Consensus 253 ~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~ 332 (374)
+.+.|+.+++++.-+.||+.|+++|.||++.. ....... ..+.|.++..+|++.+++.|.+++.|.|-.....+.
T Consensus 552 DGascIdis~dGtklWTGGlDntvRcWDlreg--rqlqqhd---F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k 626 (705)
T KOG0639|consen 552 DGASCIDISKDGTKLWTGGLDNTVRCWDLREG--RQLQQHD---FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK 626 (705)
T ss_pred CCceeEEecCCCceeecCCCccceeehhhhhh--hhhhhhh---hhhhheecccCCCccceeeecccCcEEEEecCCccc
Confidence 99999999999999999999999999999642 2222111 124588999999999999999999999987765555
Q ss_pred EEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 333 LAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 333 ~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
+ .+-.|+..|.++.|++-|++++|.+.|..+..|..
T Consensus 627 y-qlhlheScVLSlKFa~cGkwfvStGkDnlLnawrt 662 (705)
T KOG0639|consen 627 Y-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT 662 (705)
T ss_pred e-eecccccEEEEEEecccCceeeecCchhhhhhccC
Confidence 4 45569999999999999999999999999999964
No 104
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=2.6e-21 Score=156.36 Aligned_cols=255 Identities=18% Similarity=0.226 Sum_probs=182.5
Q ss_pred EEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCccc---ceeeeeeeeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH---RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 12 ~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
.+..+|++-|-.+...=.|++|+|+|.|++|||+..... +.+.++.+|.. .+-.+++....-++.|+|++.||.|
T Consensus 5 ~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~G--PVwqv~wahPk~G~iLAScsYDgkV 82 (299)
T KOG1332|consen 5 TIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSG--PVWKVAWAHPKFGTILASCSYDGKV 82 (299)
T ss_pred ehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCC--CeeEEeecccccCcEeeEeecCceE
Confidence 445689999998888888999999999999999997543 35677888874 4777777665556899999999999
Q ss_pred EEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc
Q 017296 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (374)
.+|.-.+|+- .+. .....| .+
T Consensus 83 IiWke~~g~w-~k~----~e~~~h------------------------------------------------------~~ 103 (299)
T KOG1332|consen 83 IIWKEENGRW-TKA----YEHAAH------------------------------------------------------SA 103 (299)
T ss_pred EEEecCCCch-hhh----hhhhhh------------------------------------------------------cc
Confidence 9999877631 000 000000 00
Q ss_pred cCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCC--cee
Q 017296 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI--PLT 246 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~--~~~ 246 (374)
+ + . +..+.+.. -...|+.|+.||.|.+.+.+..+. .-.
T Consensus 104 S----V-----------N---------sV~waphe----------------ygl~LacasSDG~vsvl~~~~~g~w~t~k 143 (299)
T KOG1332|consen 104 S----V-----------N---------SVAWAPHE----------------YGLLLACASSDGKVSVLTYDSSGGWTTSK 143 (299)
T ss_pred c----c-----------e---------eecccccc----------------cceEEEEeeCCCcEEEEEEcCCCCccchh
Confidence 0 0 0 00011111 112477899999999998876421 223
Q ss_pred eeecCccCeEEEEEecC---C-----------CceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCC--
Q 017296 247 AMKVHLEPVLCLSIDES---C-----------NGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDS-- 310 (374)
Q Consensus 247 ~~~~h~~~v~~~~~~~~---~-----------~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-- 310 (374)
..+.|.-.|+++++.|. + ..|++|+.|+.|++|+.+.. ...+...+..|.+.|+.+++.|.-
T Consensus 144 i~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~--~w~~e~~l~~H~dwVRDVAwaP~~gl 221 (299)
T KOG1332|consen 144 IVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD--SWKLERTLEGHKDWVRDVAWAPSVGL 221 (299)
T ss_pred hhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc--chhhhhhhhhcchhhhhhhhccccCC
Confidence 35679999999998654 2 23799999999999998754 444445577888999999999953
Q ss_pred --CEEEEEeCCCeEEEEEccC-CeE--EEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 311 --KIAATAGWDRRVRIYNYRK-GSA--LAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 311 --~~l~s~~~dg~v~iwd~~~-~~~--~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
.+|||++.||+|-||.... .+. ...+...+..++++.||+.|..|+.++.|+.|++|.-
T Consensus 222 ~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 222 PKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred CceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence 4799999999999997642 122 1233345578999999999999999999999999963
No 105
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=1.8e-20 Score=178.41 Aligned_cols=302 Identities=22% Similarity=0.328 Sum_probs=199.3
Q ss_pred ceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeee-ceeeeEEeccCCccccceeeeccccCeEEEEecCCCCC
Q 017296 20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS-AAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGL 98 (374)
Q Consensus 20 ~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~ 98 (374)
+-..+.|+|-...+++++.--.|+|||.+.++.+..+..+. ...+|..+.+-...|...+++++.||.||+|+--...-
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 34567889989999999988899999999998877654332 22346666665555667899999999999999532210
Q ss_pred CCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEe
Q 017296 99 SSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWD 178 (374)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd 178 (374)
..+.++ +. +..++-+. .. ..+.+-++.. ....++++++|. -..|+|||
T Consensus 1146 -~~~eLV--Ta---w~~Ls~~~--------~~------~r~~~~v~dW-----------qQ~~G~Ll~tGd-~r~IRIWD 1193 (1387)
T KOG1517|consen 1146 -KKPELV--TA---WSSLSDQL--------PG------ARGTGLVVDW-----------QQQSGHLLVTGD-VRSIRIWD 1193 (1387)
T ss_pred -CCceeE--Ee---eccccccC--------cc------CCCCCeeeeh-----------hhhCCeEEecCC-eeEEEEEe
Confidence 011111 10 00000000 00 0000101110 112245566664 57999999
Q ss_pred cCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCC--ceeeeecCccC--
Q 017296 179 LNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI--PLTAMKVHLEP-- 254 (374)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~--~~~~~~~h~~~-- 254 (374)
+...+.+..++-.. ..+. .....+... ...+++|..||.|++||.|.+.. .+...+.|+..
T Consensus 1194 a~~E~~~~diP~~s------------~t~v--TaLS~~~~~-gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~ 1258 (1387)
T KOG1517|consen 1194 AHKEQVVADIPYGS------------STLV--TALSADLVH-GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEP 1258 (1387)
T ss_pred cccceeEeecccCC------------Cccc--eeecccccC-CceEEEeecCCceEEeecccCCccccceeecccCCccc
Confidence 99988777665321 0010 112222222 23688999999999999987543 44556678876
Q ss_pred eEEEEEecCCCc-eEEEecCCeEEEEEcCCCCCeEEEEEeeecCC-C--CeEEEEECCCCCEEEEEeCCCeEEEEEccCC
Q 017296 255 VLCLSIDESCNG-GISGGADQKIVLYNLDHSTGSCVIKKEINLER-P--GISGTSIRPDSKIAATAGWDRRVRIYNYRKG 330 (374)
Q Consensus 255 v~~~~~~~~~~~-~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~-~--~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~ 330 (374)
|..+.+.+.+.. +++||.||.|++||++... +.. ...+..|. . .++++.+|++..++|+|+. +.|+||++ .|
T Consensus 1259 Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~-~e~-~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~-~G 1334 (1387)
T KOG1517|consen 1259 IVHLSLQRQGLGELVSGSQDGDIQLLDLRMSS-KET-FLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSL-SG 1334 (1387)
T ss_pred ceeEEeecCCCcceeeeccCCeEEEEecccCc-ccc-cceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEec-Ch
Confidence 999999876655 8999999999999998631 111 11222221 2 3889999999999999998 99999998 46
Q ss_pred eEEEEecccC-------CceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 331 SALAILKYHH-------ATCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 331 ~~~~~~~~h~-------~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
+.+..++.++ ..+.+++|+|-..+||.|+.|.+|.|+....+
T Consensus 1335 ~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1335 EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred hhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 6665554433 46799999999899999999999999987665
No 106
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.87 E-value=2.7e-20 Score=152.42 Aligned_cols=257 Identities=18% Similarity=0.236 Sum_probs=164.9
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeec-----c
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ-----G 83 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-----~ 83 (374)
+.+.++.||++.|.|+..+.+.+.|+|||.|.++++||..+|+++...... ..+..+.|+. ++++++.. +
T Consensus 43 erlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~---~~Vk~~~F~~--~gn~~l~~tD~~mg 117 (327)
T KOG0643|consen 43 ERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTN---SPVKRVDFSF--GGNLILASTDKQMG 117 (327)
T ss_pred ceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecC---CeeEEEeecc--CCcEEEEEehhhcC
Confidence 567899999999999999999999999999999999999999998876543 3466677776 45655433 3
Q ss_pred ccCeEEEEecCCCCC---CCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCC
Q 017296 84 RDGTVKCWDIENGGL---SSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEG 160 (374)
Q Consensus 84 ~D~~vrvwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (374)
.-+.|-++|++.... ...|.+.+.+. ... . + .....+.
T Consensus 118 ~~~~v~~fdi~~~~~~~~s~ep~~kI~t~-------------~sk-------i----------t---------~a~Wg~l 158 (327)
T KOG0643|consen 118 YTCFVSVFDIRDDSSDIDSEEPYLKIPTP-------------DSK-------I----------T---------SALWGPL 158 (327)
T ss_pred cceEEEEEEccCChhhhcccCceEEecCC-------------ccc-------e----------e---------eeeeccc
Confidence 346888888874321 00111111000 000 0 0 0000111
Q ss_pred CceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccC
Q 017296 161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (374)
Q Consensus 161 ~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~ 240 (374)
.-.+++|..|+.|..||+++++.+..-... ++.....++ +. .....+++||.|.+-++||.++
T Consensus 159 -~~~ii~Ghe~G~is~~da~~g~~~v~s~~~-------h~~~Ind~q-----~s----~d~T~FiT~s~Dttakl~D~~t 221 (327)
T KOG0643|consen 159 -GETIIAGHEDGSISIYDARTGKELVDSDEE-------HSSKINDLQ-----FS----RDRTYFITGSKDTTAKLVDVRT 221 (327)
T ss_pred -CCEEEEecCCCcEEEEEcccCceeeechhh-------hcccccccc-----cc----CCcceEEecccCccceeeeccc
Confidence 124678889999999999998754433221 111111221 22 2334799999999999999975
Q ss_pred CCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEE----------EEeeecCCCCeEEEEECCCC
Q 017296 241 PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVI----------KKEINLERPGISGTSIRPDS 310 (374)
Q Consensus 241 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~----------~~~~~~~~~~v~~~~~sp~~ 310 (374)
- ..+.++. -..||++.++.|....++-|+.....-+=......++... ....+.|-..|++++|||+|
T Consensus 222 l-~v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdG 299 (327)
T KOG0643|consen 222 L-EVLKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDG 299 (327)
T ss_pred e-eeEEEee-ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCC
Confidence 2 2233332 3569999999987766666555433332222222222111 12345677889999999999
Q ss_pred CEEEEEeCCCeEEEEEcc
Q 017296 311 KIAATAGWDRRVRIYNYR 328 (374)
Q Consensus 311 ~~l~s~~~dg~v~iwd~~ 328 (374)
+..+||++||.||+.-..
T Consensus 300 ksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 300 KSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred cccccCCCCceEEEEEec
Confidence 999999999999987543
No 107
>PTZ00421 coronin; Provisional
Probab=99.87 E-value=9.3e-20 Score=171.30 Aligned_cols=145 Identities=20% Similarity=0.374 Sum_probs=121.7
Q ss_pred EEEEEecCCcEEEEeccCCC------CceeeeecCccCeEEEEEecCC-CceEEEecCCeEEEEEcCCCCCeEEEEEeee
Q 017296 223 NVLAGYEDGSILVWDIRNPG------IPLTAMKVHLEPVLCLSIDESC-NGGISGGADQKIVLYNLDHSTGSCVIKKEIN 295 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~------~~~~~~~~h~~~v~~~~~~~~~-~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~ 295 (374)
.|++|+.|++|++||+.... .++..+.+|...|.++.|+|.. ..+++++.|++|++||++... . ...+.
T Consensus 90 ~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~--~--~~~l~ 165 (493)
T PTZ00421 90 KLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK--A--VEVIK 165 (493)
T ss_pred EEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe--E--EEEEc
Confidence 68999999999999996532 2466788999999999999875 578999999999999997542 2 23445
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCc-eEEEEEeCCCCEEEEEe----CCCcEEEecCC
Q 017296 296 LERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHAT-CNAVSFSSDCKLMASAS----EDSTVALWELY 370 (374)
Q Consensus 296 ~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~-v~~v~~sp~~~~las~s----~D~~v~~W~~~ 370 (374)
.|...|.+++|+|++++|++++.|++|++||+++++.+..+.+|.+. +..+.|.+++..|++++ .|+.|++||+.
T Consensus 166 ~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr 245 (493)
T PTZ00421 166 CHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTR 245 (493)
T ss_pred CCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCC
Confidence 67778999999999999999999999999999999999889889864 45678999888777654 58999999985
Q ss_pred C
Q 017296 371 P 371 (374)
Q Consensus 371 ~ 371 (374)
.
T Consensus 246 ~ 246 (493)
T PTZ00421 246 K 246 (493)
T ss_pred C
Confidence 4
No 108
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1.2e-20 Score=174.51 Aligned_cols=287 Identities=19% Similarity=0.281 Sum_probs=190.9
Q ss_pred CCceeEEEEeCCCCEEEEecCCCcEEEEeCcccce----eeeeeee-eceeeeEEeccCCccccceeeeccccCeEEEEe
Q 017296 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT----VSSSWVH-SAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (374)
Q Consensus 18 ~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd 92 (374)
+..+++|..+++...++.++. ...+|+....-.. ...+... .....+.-+.++ ....+.+++++..|.|-+||
T Consensus 39 k~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~-~~~~NlIAT~s~nG~i~vWd 116 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWG-QLYSNLIATCSTNGVISVWD 116 (839)
T ss_pred ccccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccc-cchhhhheeecCCCcEEEEe
Confidence 355666778888888888885 5677776543221 1110000 000112223454 44668899999999999999
Q ss_pred cCCCCCCCCCc---eeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEccc
Q 017296 93 IENGGLSSNPS---LTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE 169 (374)
Q Consensus 93 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (374)
+... .+++. +..+....+ +. ++.... ..++++|+
T Consensus 117 lnk~--~rnk~l~~f~EH~Rs~~----------------------~l------------------dfh~te-p~iliSGS 153 (839)
T KOG0269|consen 117 LNKS--IRNKLLTVFNEHERSAN----------------------KL------------------DFHSTE-PNILISGS 153 (839)
T ss_pred cCcc--ccchhhhHhhhhcccee----------------------ee------------------eeccCC-ccEEEecC
Confidence 9652 11111 011000000 00 111111 24788999
Q ss_pred CCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeee
Q 017296 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK 249 (374)
Q Consensus 170 ~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~ 249 (374)
+|++|+.||++..+...++..+.. ..+-+ .|.+.. ...++++++.|.+++||+|.+..+...+.
T Consensus 154 QDg~vK~~DlR~~~S~~t~~~nSE--------SiRDV-----~fsp~~---~~~F~s~~dsG~lqlWDlRqp~r~~~k~~ 217 (839)
T KOG0269|consen 154 QDGTVKCWDLRSKKSKSTFRSNSE--------SIRDV-----KFSPGY---GNKFASIHDSGYLQLWDLRQPDRCEKKLT 217 (839)
T ss_pred CCceEEEEeeecccccccccccch--------hhhce-----eeccCC---CceEEEecCCceEEEeeccCchhHHHHhh
Confidence 999999999999887666654321 11111 232221 22589999999999999999988888899
Q ss_pred cCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCE-EEEEe--CCCeEEEEE
Q 017296 250 VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKI-AATAG--WDRRVRIYN 326 (374)
Q Consensus 250 ~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~s~~--~dg~v~iwd 326 (374)
.|.++|.|+.++|+...+||||.|+.|++||+.+....... .++ ....+..+.|.|..++ ||+.+ .|-.|+|||
T Consensus 218 AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~--tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWD 294 (839)
T KOG0269|consen 218 AHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKH--TIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWD 294 (839)
T ss_pred cccCceEEEeecCCCceeeecCCCccEEEEeccCCCcccee--EEe-ecceeeeeeeccCccchhhhhhccccceEEEEe
Confidence 99999999999999999999999999999999753222111 111 2246889999998776 44333 478899999
Q ss_pred ccCC-eEEEEecccCCceEEEEEeC-CCCEEEEEeCCCcEEEec
Q 017296 327 YRKG-SALAILKYHHATCNAVSFSS-DCKLMASASEDSTVALWE 368 (374)
Q Consensus 327 ~~~~-~~~~~~~~h~~~v~~v~~sp-~~~~las~s~D~~v~~W~ 368 (374)
++.+ -+..++..|...+..++|-. |-..|.++|.|++|..-.
T Consensus 295 vrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~ 338 (839)
T KOG0269|consen 295 VRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHL 338 (839)
T ss_pred eccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhh
Confidence 9765 35678889999999999964 445889999999986543
No 109
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.87 E-value=4.3e-19 Score=157.00 Aligned_cols=321 Identities=18% Similarity=0.282 Sum_probs=201.9
Q ss_pred CeEEeecCCCceeEEEEeCCCCEEEEecCCC--------cEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeee
Q 017296 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGG--------ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVIS 81 (374)
Q Consensus 10 ~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~--------~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 81 (374)
..+.+.||...|.|++.+|+.-++++|...+ .+++||..+-..+..+-. ...++.+++|+....++.+..
T Consensus 96 ~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~--f~~GV~~vaFsk~~~G~~l~~ 173 (626)
T KOG2106|consen 96 SQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGF--FDRGVTCVAFSKINGGSLLCA 173 (626)
T ss_pred hcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeecc--ccccceeeeecccCCCceEEE
Confidence 4456789999999999999998999887666 499999887776666542 224588899988766665443
Q ss_pred --ccccCeEEEEecCCCCCCCCCceeeeeccee--eeeeeeeccccccccccCCC-CcccccccCceeecCCCCCCCCCC
Q 017296 82 --QGRDGTVKCWDIENGGLSSNPSLTIKTNSYH--FCKLSLVKEPYANAKQANEP-KDCYEREVGETVDTDSLCDSKDDV 156 (374)
Q Consensus 82 --~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 156 (374)
-+.+..+-+||.+.+..... +++.+-. .+.+.+. .+. .....+.. ..-+..+.+..+... ..+
T Consensus 174 vD~s~~h~lSVWdWqk~~~~~~----vk~sne~v~~a~FHPt-d~n-liit~Gk~H~~Fw~~~~~~l~k~~------~~f 241 (626)
T KOG2106|consen 174 VDDSNPHMLSVWDWQKKAKLGP----VKTSNEVVFLATFHPT-DPN-LIITCGKGHLYFWTLRGGSLVKRQ------GIF 241 (626)
T ss_pred ecCCCccccchhhchhhhccCc----ceeccceEEEEEeccC-CCc-EEEEeCCceEEEEEccCCceEEEe------ecc
Confidence 57788999999987643211 1111000 0000000 000 00000000 000001111000000 000
Q ss_pred CCCCCce----------EEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEE
Q 017296 157 PAEGPKY----------MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA 226 (374)
Q Consensus 157 ~~~~~~~----------~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (374)
...++++ -+++|..++.|.||+..+.+...... .+++...+.+.. ..| .+++
T Consensus 242 ek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~----------aH~ggv~~L~~l------r~G--tllS 303 (626)
T KOG2106|consen 242 EKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVH----------AHDGGVFSLCML------RDG--TLLS 303 (626)
T ss_pred ccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEee----------ecCCceEEEEEe------cCc--cEee
Confidence 0011111 14678888999999997765443332 122333333221 122 4788
Q ss_pred EecCCcEEEEeccC--------C---CC----------------------------ceeeeecCccCeEEEEEecCCCce
Q 017296 227 GYEDGSILVWDIRN--------P---GI----------------------------PLTAMKVHLEPVLCLSIDESCNGG 267 (374)
Q Consensus 227 gs~dg~i~iwdl~~--------~---~~----------------------------~~~~~~~h~~~v~~~~~~~~~~~~ 267 (374)
|..|..|.+||-.- | +. .....++|.+....++.+|+..++
T Consensus 304 GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~ 383 (626)
T KOG2106|consen 304 GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQL 383 (626)
T ss_pred cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhhe
Confidence 99999999998310 0 00 001236788889999999998999
Q ss_pred EEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEE
Q 017296 268 ISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVS 347 (374)
Q Consensus 268 ~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~ 347 (374)
++++.|+.++||+ + . +...... ..+.+.++.|+|.| .+|.|...|...+.|.++...+ ++....++++.++
T Consensus 384 ~T~gqdk~v~lW~-~-~--k~~wt~~---~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv-~~~~d~~~ls~v~ 454 (626)
T KOG2106|consen 384 LTCGQDKHVRLWN-D-H--KLEWTKI---IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLV-TIHTDNEQLSVVR 454 (626)
T ss_pred eeccCcceEEEcc-C-C--ceeEEEE---ecCceeEeeccCcc-eEEEeeccceEEEEecccceeE-EEEecCCceEEEE
Confidence 9999999999998 2 1 2222221 23568899999999 8999999999999999884444 4433478999999
Q ss_pred EeCCCCEEEEEeCCCcEEEecCCC
Q 017296 348 FSSDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 348 ~sp~~~~las~s~D~~v~~W~~~~ 371 (374)
|+|+|.+||.||.|+.|+|+.++.
T Consensus 455 ysp~G~~lAvgs~d~~iyiy~Vs~ 478 (626)
T KOG2106|consen 455 YSPDGAFLAVGSHDNHIYIYRVSA 478 (626)
T ss_pred EcCCCCEEEEecCCCeEEEEEECC
Confidence 999999999999999999998754
No 110
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.87 E-value=8.3e-20 Score=175.02 Aligned_cols=268 Identities=20% Similarity=0.256 Sum_probs=184.3
Q ss_pred eecC-CCceeEEEEeCCCCEEEEec--CCCcEEEEeCcc------------cceeeeeeeeeceeeeEEeccCCccccce
Q 017296 14 LRGH-RASVTDVCFHQTKPILFAGT--TGGELRIWDTVQ------------HRTVSSSWVHSAAHGIVSVATGPSIGLNK 78 (374)
Q Consensus 14 l~gH-~~~V~~l~~~~~~~~l~s~s--~D~~v~vWd~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (374)
+.+| ...|.+|..+|+|..++||+ .|+.+++|+... .+.+-....|. ..+.|+-|++ ++.+
T Consensus 8 wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~--~sv~CVR~S~--dG~~ 83 (942)
T KOG0973|consen 8 WVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHD--GSVNCVRFSP--DGSY 83 (942)
T ss_pred ccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeecccc--CceeEEEECC--CCCe
Confidence 3445 46689999999999999999 999999998532 11112222343 3477788887 7899
Q ss_pred eeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCC
Q 017296 79 VISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPA 158 (374)
Q Consensus 79 l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (374)
||+||.|+-|-+|...... .. . . ++ .
T Consensus 84 lAsGSDD~~v~iW~~~~~~-~~-~----------~---------------fg--------s------------------- 109 (942)
T KOG0973|consen 84 LASGSDDRLVMIWERAEIG-SG-T----------V---------------FG--------S------------------- 109 (942)
T ss_pred EeeccCcceEEEeeecccC-Cc-c----------c---------------cc--------c-------------------
Confidence 9999999999999986410 00 0 0 00 0
Q ss_pred CCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEec
Q 017296 159 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 238 (374)
Q Consensus 159 ~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl 238 (374)
.|+ -..+.=| ++...+..+ ......++ ..| ....+++++.|++|.+||.
T Consensus 110 --------~g~-~~~vE~w-----k~~~~l~~H--------~~DV~Dv~-----Wsp----~~~~lvS~s~DnsViiwn~ 158 (942)
T KOG0973|consen 110 --------TGG-AKNVESW-----KVVSILRGH--------DSDVLDVN-----WSP----DDSLLVSVSLDNSVIIWNA 158 (942)
T ss_pred --------ccc-cccccee-----eEEEEEecC--------CCccceec-----cCC----CccEEEEecccceEEEEcc
Confidence 000 0011111 111111111 00000000 111 2236899999999999999
Q ss_pred cCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCC--------------------------CeEE---
Q 017296 239 RNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST--------------------------GSCV--- 289 (374)
Q Consensus 239 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~--------------------------~~~~--- 289 (374)
++. ..+..+.+|...|..+.|||-+.++++-+.|++|++|++..-+ |.+.
T Consensus 159 ~tF-~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~ 237 (942)
T KOG0973|consen 159 KTF-ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASP 237 (942)
T ss_pred ccc-eeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecch
Confidence 886 6688899999999999999999999999999999999953210 1000
Q ss_pred -------------------EEEeeecCCCCeEEEEECC-----CCC------------EEEEEeCCCeEEEEEccCCeEE
Q 017296 290 -------------------IKKEINLERPGISGTSIRP-----DSK------------IAATAGWDRRVRIYNYRKGSAL 333 (374)
Q Consensus 290 -------------------~~~~~~~~~~~v~~~~~sp-----~~~------------~l~s~~~dg~v~iwd~~~~~~~ 333 (374)
....+-.|..++..+.|+| +.+ .+|+|+.|+++.||.....+++
T Consensus 238 nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl 317 (942)
T KOG0973|consen 238 NAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPL 317 (942)
T ss_pred hhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCch
Confidence 0112335777899999986 222 6789999999999999888888
Q ss_pred EEecc-cCCceEEEEEeCCCCEEEEEeCCCcEEEecCCC
Q 017296 334 AILKY-HHATCNAVSFSSDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 334 ~~~~~-h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~ 371 (374)
..... -...|..+.|+|||..|+.+|.||+|.+..+++
T Consensus 318 ~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 318 FVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred hhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 65432 236899999999999999999999999998865
No 111
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.86 E-value=4.5e-21 Score=163.04 Aligned_cols=249 Identities=16% Similarity=0.273 Sum_probs=171.6
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
.+..+++.|.+.|+.|++.. ..++|++.|.+|+.|..+ +.++.++.+... +.. .+.....+.++|+|+ .|
T Consensus 100 ~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~-~~p~~tilg~s~---~~g--Idh~~~~~~FaTcGe--~i 169 (433)
T KOG0268|consen 100 ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKID-GPPLHTILGKSV---YLG--IDHHRKNSVFATCGE--QI 169 (433)
T ss_pred hhhheeecccCceeeEEecc--cceEEecCCcceeeeecc-CCcceeeecccc---ccc--cccccccccccccCc--ee
Confidence 46789999999999999977 679999999999999975 345555433221 222 222224567888886 58
Q ss_pred EEEecCCCCCCCCCceeeee--cceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEE
Q 017296 89 KCWDIENGGLSSNPSLTIKT--NSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (374)
-|||.+... |...+.. ..++ +..+++. . -.+++
T Consensus 170 ~IWD~~R~~----Pv~smswG~Dti~----------------------svkfNpv------------------E-TsILa 204 (433)
T KOG0268|consen 170 DIWDEQRDN----PVSSMSWGADSIS----------------------SVKFNPV------------------E-TSILA 204 (433)
T ss_pred eecccccCC----ccceeecCCCcee----------------------EEecCCC------------------c-chhee
Confidence 899986432 1111110 0000 0011111 1 12456
Q ss_pred cccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCcee
Q 017296 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (374)
Q Consensus 167 ~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~ 246 (374)
++..|+.|.++|++++..+.++....-. ...| +.| ..-.+++|++|..+..||++.-..++.
T Consensus 205 s~~sDrsIvLyD~R~~~Pl~KVi~~mRT---------N~Is-----wnP----eafnF~~a~ED~nlY~~DmR~l~~p~~ 266 (433)
T KOG0268|consen 205 SCASDRSIVLYDLRQASPLKKVILTMRT---------NTIC-----WNP----EAFNFVAANEDHNLYTYDMRNLSRPLN 266 (433)
T ss_pred eeccCCceEEEecccCCccceeeeeccc---------ccee-----cCc----cccceeeccccccceehhhhhhcccch
Confidence 6667899999999999877666432111 1111 222 112488899999999999998778888
Q ss_pred eeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 017296 247 AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYN 326 (374)
Q Consensus 247 ~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd 326 (374)
..++|...|..+.|+|.|+-+++||.|.+|++|..+.+...-... ......|.++.||-|.+||+||+.|+.||+|-
T Consensus 267 v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYh---tkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 267 VHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYH---TKRMQHVFCVKYSMDSKYIISGSDDGNVRLWK 343 (433)
T ss_pred hhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhh---HhhhheeeEEEEeccccEEEecCCCcceeeee
Confidence 899999999999999999999999999999999987543211100 01123589999999999999999999999997
Q ss_pred ccCCeEE
Q 017296 327 YRKGSAL 333 (374)
Q Consensus 327 ~~~~~~~ 333 (374)
..-.+.+
T Consensus 344 a~Asekl 350 (433)
T KOG0268|consen 344 AKASEKL 350 (433)
T ss_pred cchhhhc
Confidence 7544433
No 112
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.86 E-value=2e-20 Score=171.11 Aligned_cols=178 Identities=20% Similarity=0.300 Sum_probs=143.6
Q ss_pred eEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCC
Q 017296 163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 242 (374)
Q Consensus 163 ~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~ 242 (374)
..++.|+.|.+|.+|.+.+...+..+.++. ..+|... . ...+ .+++||.|.++++|-+.
T Consensus 72 ~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~-----------snVC~ls----~-~~~~--~~iSgSWD~TakvW~~~--- 130 (745)
T KOG0301|consen 72 GRLVVGGMDTTIIVFKLSQAEPLYTLKGHK-----------SNVCSLS----I-GEDG--TLISGSWDSTAKVWRIG--- 130 (745)
T ss_pred cceEeecccceEEEEecCCCCchhhhhccc-----------cceeeee----c-CCcC--ceEecccccceEEecch---
Confidence 346678889999999998888777776542 1222111 0 1122 38999999999999864
Q ss_pred CceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeE
Q 017296 243 IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRV 322 (374)
Q Consensus 243 ~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v 322 (374)
.....+++|+.+|..+..-|+. .++|||.|.+||+|.-+. ....+.+|.+-|+.+++=|++ .++|++.||.|
T Consensus 131 ~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~~------~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~I 202 (745)
T KOG0301|consen 131 ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGGT------LLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSI 202 (745)
T ss_pred hhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccCCc------hhhhhccchhheeeeEEecCC-CeEeecCCceE
Confidence 3455689999999999998876 689999999999996431 234567788999999999876 47889999999
Q ss_pred EEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 323 RIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 323 ~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
++|++ +|+++..+.+|.+.|.++...+++..++|+++|+++|||+..
T Consensus 203 r~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 203 RLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred EEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 99999 889999999999999999988899999999999999999864
No 113
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.86 E-value=2.6e-20 Score=165.04 Aligned_cols=259 Identities=20% Similarity=0.301 Sum_probs=158.9
Q ss_pred eeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCce
Q 017296 64 GIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGET 143 (374)
Q Consensus 64 ~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (374)
.|.++++.+ .+.+|+|||.|-+|++||.+.-.. . ++ ++..+ .+..+..+.
T Consensus 169 ~Vsal~~Dp--~GaR~~sGs~Dy~v~~wDf~gMda-s-----~~----~fr~l--------------~P~E~h~i~---- 218 (641)
T KOG0772|consen 169 IVSALAVDP--SGARFVSGSLDYTVKFWDFQGMDA-S-----MR----SFRQL--------------QPCETHQIN---- 218 (641)
T ss_pred EEEEeeecC--CCceeeeccccceEEEEecccccc-c-----ch----hhhcc--------------Ccccccccc----
Confidence 366777777 568999999999999999964210 0 00 00000 001110000
Q ss_pred eecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceE
Q 017296 144 VDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVN 223 (374)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (374)
+. ...+.+..+++++|+. ..+|+|-.-.+...+..+......+ ..+++..--+....+.|. ....
T Consensus 219 ----sl-----~ys~Tg~~iLvvsg~a--qakl~DRdG~~~~e~~KGDQYI~Dm-~nTKGHia~lt~g~whP~---~k~~ 283 (641)
T KOG0772|consen 219 ----SL-----QYSVTGDQILVVSGSA--QAKLLDRDGFEIVEFSKGDQYIRDM-YNTKGHIAELTCGCWHPD---NKEE 283 (641)
T ss_pred ----ee-----eecCCCCeEEEEecCc--ceeEEccCCceeeeeeccchhhhhh-hccCCceeeeeccccccC---cccc
Confidence 00 1122344567777764 6888986544444443332211110 011111111111122232 3336
Q ss_pred EEEEecCCcEEEEeccCCCCceeeee-----cCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCC
Q 017296 224 VLAGYEDGSILVWDIRNPGIPLTAMK-----VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLER 298 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~ 298 (374)
+++++.||++||||+.+....++.++ +-.-+++..+|++++..+|+|..||+|.+|+....+.... ....++|.
T Consensus 284 FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~-~~vk~AH~ 362 (641)
T KOG0772|consen 284 FLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPV-MKVKDAHL 362 (641)
T ss_pred eEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccc-eEeeeccC
Confidence 89999999999999976554444332 2345789999999999999999999999999854332222 22334565
Q ss_pred C--CeEEEEECCCCCEEEEEeCCCeEEEEEccCCe-EEEEecccC--CceEEEEEeCCCCEEEEEe------CCCcEEEe
Q 017296 299 P--GISGTSIRPDSKIAATAGWDRRVRIYNYRKGS-ALAILKYHH--ATCNAVSFSSDCKLMASAS------EDSTVALW 367 (374)
Q Consensus 299 ~--~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~h~--~~v~~v~~sp~~~~las~s------~D~~v~~W 367 (374)
. .|++++||+||++|+|-|.|+++++||++..+ ++.+..+-. -.-..+.|||+.++|+||. .-+++.++
T Consensus 363 ~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~ 442 (641)
T KOG0772|consen 363 PGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFF 442 (641)
T ss_pred CCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEE
Confidence 5 89999999999999999999999999998754 444433322 2345679999999999874 33455555
Q ss_pred c
Q 017296 368 E 368 (374)
Q Consensus 368 ~ 368 (374)
+
T Consensus 443 d 443 (641)
T KOG0772|consen 443 D 443 (641)
T ss_pred e
Confidence 4
No 114
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=3.4e-20 Score=162.54 Aligned_cols=238 Identities=16% Similarity=0.223 Sum_probs=170.0
Q ss_pred CCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCC
Q 017296 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG 97 (374)
Q Consensus 18 ~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~ 97 (374)
.++|.||+-+|.|.+|+.|...+.+++|.+.+|+.+..+..|= ..+.++.|+. |+.+++|||.||.|++|++-.-
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHY--Q~ITcL~fs~--dgs~iiTgskDg~V~vW~l~~l- 155 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHY--QSITCLKFSD--DGSHIITGSKDGAVLVWLLTDL- 155 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhc--cceeEEEEeC--CCcEEEecCCCccEEEEEEEee-
Confidence 4779999999999999999899999999999999887765552 4588888876 6789999999999999998420
Q ss_pred CCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEE
Q 017296 98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIW 177 (374)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vW 177 (374)
. ...+.. .. ..++.|
T Consensus 156 -v-------------------~a~~~~-----------------------------------~~----------~p~~~f 170 (476)
T KOG0646|consen 156 -V-------------------SADNDH-----------------------------------SV----------KPLHIF 170 (476)
T ss_pred -c-------------------ccccCC-----------------------------------Cc----------cceeee
Confidence 0 000000 00 012222
Q ss_pred ecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEE
Q 017296 178 DLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLC 257 (374)
Q Consensus 178 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~ 257 (374)
.--+ -.+..++- .......+++++|.|.++|+||+.. +..+.++ ....++.+
T Consensus 171 ~~Ht-lsITDl~i-------------------------g~Gg~~~rl~TaS~D~t~k~wdlS~-g~LLlti-~fp~si~a 222 (476)
T KOG0646|consen 171 SDHT-LSITDLQI-------------------------GSGGTNARLYTASEDRTIKLWDLSL-GVLLLTI-TFPSSIKA 222 (476)
T ss_pred ccCc-ceeEEEEe-------------------------cCCCccceEEEecCCceEEEEEecc-ceeeEEE-ecCCccee
Confidence 1000 01111110 0000112689999999999999975 3333333 25678999
Q ss_pred EEEecCCCceEEEecCCeEEEEEcCCCCCeE------------EEEEeeecCCC--CeEEEEECCCCCEEEEEeCCCeEE
Q 017296 258 LSIDESCNGGISGGADQKIVLYNLDHSTGSC------------VIKKEINLERP--GISGTSIRPDSKIAATAGWDRRVR 323 (374)
Q Consensus 258 ~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~------------~~~~~~~~~~~--~v~~~~~sp~~~~l~s~~~dg~v~ 323 (374)
+++||.+..++.|+.+|.|-+.++....+.. .....+..|.. .|++++++-||.+|+||+.||+|+
T Consensus 223 v~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~Vc 302 (476)
T KOG0646|consen 223 VALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVC 302 (476)
T ss_pred EEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEE
Confidence 9999999999999999999998875433111 11223345555 899999999999999999999999
Q ss_pred EEEccCCeEEEEecccCCceEEEEEeCCCC
Q 017296 324 IYNYRKGSALAILKYHHATCNAVSFSSDCK 353 (374)
Q Consensus 324 iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~ 353 (374)
|||+.+.++++++..-.++|+.+.+.|--+
T Consensus 303 vWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 303 VWDIYSKQCIRTLQTSKGPVTNLQINPLER 332 (476)
T ss_pred EEecchHHHHHHHhhhccccceeEeecccc
Confidence 999999888888876678999999876433
No 115
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.86 E-value=8.7e-20 Score=148.95 Aligned_cols=242 Identities=19% Similarity=0.188 Sum_probs=163.0
Q ss_pred eeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCce
Q 017296 64 GIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGET 143 (374)
Q Consensus 64 ~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (374)
.+.++++.. ++.+|++|+.|+++++|++...+..-. ..+..|... ..+
T Consensus 22 ~v~Sv~wn~--~g~~lasgs~dktv~v~n~e~~r~~~~-----~~~~gh~~s----------------vdq--------- 69 (313)
T KOG1407|consen 22 KVHSVAWNC--DGTKLASGSFDKTVSVWNLERDRFRKE-----LVYRGHTDS----------------VDQ--------- 69 (313)
T ss_pred cceEEEEcc--cCceeeecccCCceEEEEecchhhhhh-----hcccCCCcc----------------hhh---------
Confidence 366677766 678999999999999999976532100 000001000 000
Q ss_pred eecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceE
Q 017296 144 VDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVN 223 (374)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (374)
+ ...+....++++++.|++|++||.+++++...+... +...-+ ...| ++ .+
T Consensus 70 -----l------~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~-----------~eni~i---~wsp---~g-~~ 120 (313)
T KOG1407|consen 70 -----L------CWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETK-----------GENINI---TWSP---DG-EY 120 (313)
T ss_pred -----h------eeCCCCCcceEEecCCceEEEEEeccCcEEEEeecc-----------CcceEE---EEcC---CC-CE
Confidence 0 001111123445556789999999999987766432 111111 1222 22 36
Q ss_pred EEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEE
Q 017296 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISG 303 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~ 303 (374)
++.+..|..|.+.|.++.. .+...+ ..-.+..+.++-+...+.....-|.|.+-....- .....+++|...+.+
T Consensus 121 ~~~~~kdD~it~id~r~~~-~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsL----kpv~si~AH~snCic 194 (313)
T KOG1407|consen 121 IAVGNKDDRITFIDARTYK-IVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSL----KPVQSIKAHPSNCIC 194 (313)
T ss_pred EEEecCcccEEEEEecccc-eeehhc-ccceeeeeeecCCCCEEEEecCCceEEEEecccc----ccccccccCCcceEE
Confidence 8889999999999998642 222222 2234555666555555666666788888655321 123456788888999
Q ss_pred EEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 304 TSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 304 ~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
+.|+|+|+|+|+|+.|-.|.+||+++.-+...+..+.=+|..+.||-||++|||||+|-.|-|=+..++
T Consensus 195 I~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetG 263 (313)
T KOG1407|consen 195 IEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETG 263 (313)
T ss_pred EEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccC
Confidence 999999999999999999999999988888888889999999999999999999999999976555444
No 116
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=2.3e-20 Score=156.32 Aligned_cols=256 Identities=18% Similarity=0.292 Sum_probs=169.8
Q ss_pred CCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCc------c------------------------------c-
Q 017296 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTV------Q------------------------------H- 50 (374)
Q Consensus 8 ~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~------~------------------------------~- 50 (374)
.+++.++.||.+.|++|.|++.+.+++|+|.|++.-||... . +
T Consensus 180 g~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~ 259 (481)
T KOG0300|consen 180 GACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGH 259 (481)
T ss_pred ccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCc
Confidence 47899999999999999999999999999999999999720 0 0
Q ss_pred ---ceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeecccccccc
Q 017296 51 ---RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAK 127 (374)
Q Consensus 51 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (374)
-++..+.+|.. -+.++.| ..+++++++++.|.+..+||+++|++.. ...+|-..+
T Consensus 260 tiRvPl~~ltgH~~--vV~a~dW--L~gg~Q~vTaSWDRTAnlwDVEtge~v~-------~LtGHd~EL----------- 317 (481)
T KOG0300|consen 260 TIRVPLMRLTGHRA--VVSACDW--LAGGQQMVTASWDRTANLWDVETGEVVN-------ILTGHDSEL----------- 317 (481)
T ss_pred eeeeeeeeeecccc--ceEehhh--hcCcceeeeeeccccceeeeeccCceec-------cccCcchhc-----------
Confidence 01222333321 1233333 2366899999999999999999986421 001110000
Q ss_pred ccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCc-eeEEeccCccCCCCCcCCCCCcc
Q 017296 128 QANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAE-RCTRLHQNSCGGSPNFSSKGRGM 206 (374)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 206 (374)
.+| .+.+.+ -++++++.|.+.++||.+..- .+..++++ . ..+
T Consensus 318 -----tHc--------------------stHptQ-rLVvTsSrDtTFRLWDFReaI~sV~VFQGH--------t---dtV 360 (481)
T KOG0300|consen 318 -----THC--------------------STHPTQ-RLVVTSSRDTTFRLWDFREAIQSVAVFQGH--------T---DTV 360 (481)
T ss_pred -----ccc--------------------ccCCcc-eEEEEeccCceeEeccchhhcceeeeeccc--------c---cce
Confidence 000 011222 356677889999999998543 23333322 1 111
Q ss_pred eeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCC
Q 017296 207 CMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTG 286 (374)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~ 286 (374)
... .|..+ ..+++|++|.+|++||+++-..++.++. -..+++.++++..++.++.--....|+|||+++..-
T Consensus 361 TS~--vF~~d-----d~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~Rl 432 (481)
T KOG0300|consen 361 TSV--VFNTD-----DRVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRL 432 (481)
T ss_pred eEE--EEecC-----CceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCcc
Confidence 111 23332 2599999999999999987666666654 456888999987766677777788999999976433
Q ss_pred eEEEEEeeecCCCCeEEEEECCCCC--EEEEEeCCCeEEEEEccCC
Q 017296 287 SCVIKKEINLERPGISGTSIRPDSK--IAATAGWDRRVRIYNYRKG 330 (374)
Q Consensus 287 ~~~~~~~~~~~~~~v~~~~~sp~~~--~l~s~~~dg~v~iwd~~~~ 330 (374)
..+.+.....|+.-|.+.+|..+.. -|.++|.|+.+.-|.+..+
T Consensus 433 aRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 433 ARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred ccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 2232334456777788999975432 3778899999999988654
No 117
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.5e-19 Score=158.44 Aligned_cols=187 Identities=19% Similarity=0.373 Sum_probs=142.5
Q ss_pred ceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccC-
Q 017296 162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN- 240 (374)
Q Consensus 162 ~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~- 240 (374)
.+++++|...+.+.+|.+.+|..+..+..+ + +.. +...|.. +..++++|+.||.|.+|++-.
T Consensus 93 G~~l~ag~i~g~lYlWelssG~LL~v~~aH-------Y----Q~I--TcL~fs~----dgs~iiTgskDg~V~vW~l~~l 155 (476)
T KOG0646|consen 93 GYFLLAGTISGNLYLWELSSGILLNVLSAH-------Y----QSI--TCLKFSD----DGSHIITGSKDGAVLVWLLTDL 155 (476)
T ss_pred ceEEEeecccCcEEEEEeccccHHHHHHhh-------c----cce--eEEEEeC----CCcEEEecCCCccEEEEEEEee
Confidence 456777767789999999999977666432 1 111 1112332 223799999999999998731
Q ss_pred -------CCCceeeeecCccCeEEEEEec--CCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCC
Q 017296 241 -------PGIPLTAMKVHLEPVLCLSIDE--SCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSK 311 (374)
Q Consensus 241 -------~~~~~~~~~~h~~~v~~~~~~~--~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 311 (374)
...|+..+..|+-+|+.+.+.. ....++|+|.|.+||+||+... ..+ ..+.. ...+.++++.|-++
T Consensus 156 v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g--~LL--lti~f-p~si~av~lDpae~ 230 (476)
T KOG0646|consen 156 VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG--VLL--LTITF-PSSIKAVALDPAER 230 (476)
T ss_pred cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc--eee--EEEec-CCcceeEEEccccc
Confidence 1346777889999999999953 3456899999999999999543 222 22222 24588999999999
Q ss_pred EEEEEeCCCeEEEEEccCC----------------eEEEEecccCC--ceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 312 IAATAGWDRRVRIYNYRKG----------------SALAILKYHHA--TCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 312 ~l~s~~~dg~v~iwd~~~~----------------~~~~~~~~h~~--~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
.+..|+.+|.|.+.++..- ..+..+.+|.+ .|+|++.+-||.+|+||+.||.|++||+.
T Consensus 231 ~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~ 307 (476)
T KOG0646|consen 231 VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIY 307 (476)
T ss_pred EEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecc
Confidence 9999999999999877432 23556789998 99999999999999999999999999984
No 118
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=8.3e-22 Score=180.79 Aligned_cols=185 Identities=21% Similarity=0.340 Sum_probs=148.9
Q ss_pred EEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCC
Q 017296 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243 (374)
Q Consensus 164 ~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~ 243 (374)
.++.|+.|..+-+|.+.....+..+..+. ...+.+ .|.+ ...++++|+.+|+|++|||+. ..
T Consensus 42 ~~~~Gg~~~k~~L~~i~kp~~i~S~~~he--------spIeSl-----~f~~----~E~LlaagsasgtiK~wDlee-Ak 103 (825)
T KOG0267|consen 42 SLVTGGEDEKVNLWAIGKPNAITSLTGHE--------SPIESL-----TFDT----SERLLAAGSASGTIKVWDLEE-AK 103 (825)
T ss_pred eeccCCCceeeccccccCCchhheeeccC--------Ccceee-----ecCc----chhhhcccccCCceeeeehhh-hh
Confidence 35667778888899876655544443321 111111 1211 122578899999999999986 45
Q ss_pred ceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEE
Q 017296 244 PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVR 323 (374)
Q Consensus 244 ~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~ 323 (374)
.+.++.+|..++..+.|+|-+-++++||.|..+++||.+...+.. ..+.|...+..+.|+|+|+++++|++|.+++
T Consensus 104 ~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~----~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvk 179 (825)
T KOG0267|consen 104 IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSH----TYKSHTRVVDVLRLSPDGRWVASGGEDNTVK 179 (825)
T ss_pred hhhhhhccccCcceeeeccceEEeccccccccceehhhhccCcee----eecCCcceeEEEeecCCCceeeccCCcceee
Confidence 577899999999999999999888999999999999997544322 2344666788999999999999999999999
Q ss_pred EEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 324 IYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 324 iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
|||+..|+.+..+..|+..+.++.|+|..-++++||.|.+|++|++.
T Consensus 180 i~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dle 226 (825)
T KOG0267|consen 180 IWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLE 226 (825)
T ss_pred eecccccccccccccccccccccccCchhhhhccCCCCceeeeeccc
Confidence 99999999999999999999999999999999999999999999986
No 119
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.85 E-value=9.6e-22 Score=164.93 Aligned_cols=146 Identities=26% Similarity=0.418 Sum_probs=125.9
Q ss_pred eEEEEEecCCcEEEEeccCCCCceee--------eecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEe
Q 017296 222 VNVLAGYEDGSILVWDIRNPGIPLTA--------MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKE 293 (374)
Q Consensus 222 ~~~~~gs~dg~i~iwdl~~~~~~~~~--------~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~ 293 (374)
.++++||.||-|.+||..+. +.... +.-+.++|.|+.|+.+...+++|+.||.|++|.+++ +.|..+.
T Consensus 226 qyLvsgSvDGFiEVWny~~G-KlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~t--G~ClRrF- 301 (508)
T KOG0275|consen 226 QYLVSGSVDGFIEVWNYTTG-KLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIET--GQCLRRF- 301 (508)
T ss_pred ceEeeccccceeeeehhccc-hhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEec--chHHHHh-
Confidence 47999999999999998653 22222 334678999999988878899999999999999864 4444322
Q ss_pred eecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCC
Q 017296 294 INLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 294 ~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~ 371 (374)
-++|..+|+++.||.|+..++|++.|.+||+--+++|++++.+++|...|+.+.|.+||..++|+|.||+||+|+...
T Consensus 302 drAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Kt 379 (508)
T KOG0275|consen 302 DRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKT 379 (508)
T ss_pred hhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcc
Confidence 246778999999999999999999999999999999999999999999999999999999999999999999998754
No 120
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.85 E-value=1.1e-19 Score=157.89 Aligned_cols=253 Identities=19% Similarity=0.299 Sum_probs=177.6
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
+.+.+|+||+..|+.+.|+++...++++|.|..|+||......+......|.. .|+.+...+ .+.+|++++.|++.
T Consensus 252 q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~--~V~~ls~h~--tgeYllsAs~d~~w 327 (506)
T KOG0289|consen 252 QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEE--PVTGLSLHP--TGEYLLSASNDGTW 327 (506)
T ss_pred hhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccc--cceeeeecc--CCcEEEEecCCceE
Confidence 56788999999999999999999999999999999999877666555555653 355555555 56799999999999
Q ss_pred EEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc
Q 017296 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (374)
..-|+++|.+.. .... .+.... .....++++ .+++.+|
T Consensus 328 ~Fsd~~~g~~lt-----~vs~---------~~s~v~--------------------------~ts~~fHpD--gLifgtg 365 (506)
T KOG0289|consen 328 AFSDISSGSQLT-----VVSD---------ETSDVE--------------------------YTSAAFHPD--GLIFGTG 365 (506)
T ss_pred EEEEccCCcEEE-----EEee---------ccccce--------------------------eEEeeEcCC--ceEEecc
Confidence 999999885321 1000 000000 000012233 3578899
Q ss_pred cCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeee
Q 017296 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~ 248 (374)
..|+.+++||+.+......++.+. ..... ..|. .+..+++++++|+.|++||+|+.. .+.++
T Consensus 366 t~d~~vkiwdlks~~~~a~Fpght--------~~vk~-----i~Fs----ENGY~Lat~add~~V~lwDLRKl~-n~kt~ 427 (506)
T KOG0289|consen 366 TPDGVVKIWDLKSQTNVAKFPGHT--------GPVKA-----ISFS----ENGYWLATAADDGSVKLWDLRKLK-NFKTI 427 (506)
T ss_pred CCCceEEEEEcCCccccccCCCCC--------CceeE-----EEec----cCceEEEEEecCCeEEEEEehhhc-cccee
Confidence 999999999999988777776532 11111 1232 234479999999999999999743 34444
Q ss_pred ec-CccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEc
Q 017296 249 KV-HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNY 327 (374)
Q Consensus 249 ~~-h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~ 327 (374)
+- ...++..+.||..+.+++.++.|=+|.+++- .+..+....+..-|..-.+.+.|..+.+++++++.|...+++-+
T Consensus 428 ~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k--~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 428 QLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKK--KTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eccccccceeEEEcCCCCeEEeecceeEEEEEec--ccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 32 2337999999999999888877766666543 33333333444444445678899999999999999999888743
No 121
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.85 E-value=3.6e-20 Score=161.88 Aligned_cols=198 Identities=19% Similarity=0.276 Sum_probs=142.1
Q ss_pred eEEEcccCCCeEEEEecCCCceeEEeccCccC--CCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccC
Q 017296 163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCG--GSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (374)
Q Consensus 163 ~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~ 240 (374)
.++++.+..+.|.|||..+..........+.+ .-.++...+.+++.. + +....+++|++|++|++||+..
T Consensus 138 ~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn-----~---~~~g~Lls~~~d~~i~lwdi~~ 209 (422)
T KOG0264|consen 138 NIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWN-----R---QQEGTLLSGSDDHTICLWDINA 209 (422)
T ss_pred cEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccc-----c---ccceeEeeccCCCcEEEEeccc
Confidence 35667777889999998764322211100000 000111112222211 1 1223699999999999999964
Q ss_pred CC------CceeeeecCccCeEEEEEecCC-CceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECC-CCCE
Q 017296 241 PG------IPLTAMKVHLEPVLCLSIDESC-NGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP-DSKI 312 (374)
Q Consensus 241 ~~------~~~~~~~~h~~~v~~~~~~~~~-~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~ 312 (374)
.. .+...+.+|...|..++|++.. ..|++.+.|+.+.|||++..+. .......+|...+.+++|.| ++.+
T Consensus 210 ~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~--~~~~~~~ah~~~vn~~~fnp~~~~i 287 (422)
T KOG0264|consen 210 ESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTS--KPSHSVKAHSAEVNCVAFNPFNEFI 287 (422)
T ss_pred cccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCC--CCcccccccCCceeEEEeCCCCCce
Confidence 32 2456678999999999997643 4568999999999999985221 22234566778899999999 5667
Q ss_pred EEEEeCCCeEEEEEccCC-eEEEEecccCCceEEEEEeCCCC-EEEEEeCCCcEEEecCC
Q 017296 313 AATAGWDRRVRIYNYRKG-SALAILKYHHATCNAVSFSSDCK-LMASASEDSTVALWELY 370 (374)
Q Consensus 313 l~s~~~dg~v~iwd~~~~-~~~~~~~~h~~~v~~v~~sp~~~-~las~s~D~~v~~W~~~ 370 (374)
||+|+.|++|++||++.. +++.++.+|...|..|.|+|..+ .|||++.|+.+.+||+.
T Consensus 288 lAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls 347 (422)
T KOG0264|consen 288 LATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLS 347 (422)
T ss_pred EEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecc
Confidence 899999999999999875 46788999999999999999776 89999999999999985
No 122
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.85 E-value=1.7e-19 Score=150.20 Aligned_cols=239 Identities=19% Similarity=0.319 Sum_probs=157.8
Q ss_pred EEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEE
Q 017296 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (374)
Q Consensus 12 ~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvw 91 (374)
..+..|.++|.+++|+.||..+++|+.|+.+++||+.+++.. .+..|.. .+..+.|-......-|+|||.|+|||.|
T Consensus 66 ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~-~v~~Hd~--pvkt~~wv~~~~~~cl~TGSWDKTlKfW 142 (347)
T KOG0647|consen 66 KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVS-QVAAHDA--PVKTCHWVPGMNYQCLVTGSWDKTLKFW 142 (347)
T ss_pred hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCee-eeeeccc--ceeEEEEecCCCcceeEecccccceeec
Confidence 345679999999999999999999999999999999999753 4445654 3666665443234578999999999999
Q ss_pred ecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCC
Q 017296 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL 171 (374)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 171 (374)
|++...... .+ . .+..++..+ -...+++.+..+
T Consensus 143 D~R~~~pv~----t~----------~-------------LPeRvYa~D--------------------v~~pm~vVata~ 175 (347)
T KOG0647|consen 143 DTRSSNPVA----TL----------Q-------------LPERVYAAD--------------------VLYPMAVVATAE 175 (347)
T ss_pred ccCCCCeee----ee----------e-------------ccceeeehh--------------------ccCceeEEEecC
Confidence 998642211 00 0 001111111 112355666667
Q ss_pred CeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCC-Cceeeeec
Q 017296 172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG-IPLTAMKV 250 (374)
Q Consensus 172 ~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~-~~~~~~~~ 250 (374)
+.|.+++|+.+....+..... .+-...|+++ | .+ ....+.|+-.|.+.+..+..+. ..-.+++.
T Consensus 176 r~i~vynL~n~~te~k~~~Sp--------Lk~Q~R~va~--f-~d----~~~~alGsiEGrv~iq~id~~~~~~nFtFkC 240 (347)
T KOG0647|consen 176 RHIAVYNLENPPTEFKRIESP--------LKWQTRCVAC--F-QD----KDGFALGSIEGRVAIQYIDDPNPKDNFTFKC 240 (347)
T ss_pred CcEEEEEcCCCcchhhhhcCc--------ccceeeEEEE--E-ec----CCceEeeeecceEEEEecCCCCccCceeEEE
Confidence 889999997764322221110 1112233332 2 22 1235789999999999886531 22345677
Q ss_pred Ccc---------CeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEE-EEeCC
Q 017296 251 HLE---------PVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAA-TAGWD 319 (374)
Q Consensus 251 h~~---------~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-s~~~d 319 (374)
|.. +|+.++|+|....|+|+|.||++.+||-+..+. + ++...+...|++.+|+.+|.++| +.|.|
T Consensus 241 HR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~k---L-k~s~~~~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 241 HRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTK---L-KTSETHPQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred eccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhh---h-hccCcCCCccceeEecCCCCEEEEEeecc
Confidence 762 588899999988999999999999999754321 1 22334556799999999999876 34433
No 123
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.85 E-value=3.7e-19 Score=155.66 Aligned_cols=300 Identities=17% Similarity=0.241 Sum_probs=189.9
Q ss_pred CCeEEeecCCCceeEEEEeCCC--CEEEEecCCCcEEEEeCcccce--eeeeeeeeceeeeEEeccCCccccceeeeccc
Q 017296 9 DPVAVLRGHRASVTDVCFHQTK--PILFAGTTGGELRIWDTVQHRT--VSSSWVHSAAHGIVSVATGPSIGLNKVISQGR 84 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~--~~l~s~s~D~~v~vWd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 84 (374)
.+..+.+-|.+.|++++|+|.. +++++|+..|+|-+||+.+.++ -....++.+...|.++.|++. +.+++++.|.
T Consensus 177 ~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~-n~s~i~ssSy 255 (498)
T KOG4328|consen 177 RILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPA-NTSQIYSSSY 255 (498)
T ss_pred eecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCC-Chhheeeecc
Confidence 4567788899999999999965 5789999999999999942221 112223333456888888885 4478999999
Q ss_pred cCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceE
Q 017296 85 DGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM 164 (374)
Q Consensus 85 D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (374)
||+||+-|++.+... ..+........++. .++..+++ -+
T Consensus 256 DGtiR~~D~~~~i~e--~v~s~~~d~~~fs~--------------------------------------~d~~~e~~-~v 294 (498)
T KOG4328|consen 256 DGTIRLQDFEGNISE--EVLSLDTDNIWFSS--------------------------------------LDFSAESR-SV 294 (498)
T ss_pred CceeeeeeecchhhH--HHhhcCccceeeee--------------------------------------ccccCCCc-cE
Confidence 999999999875211 00000000001110 01111222 22
Q ss_pred EEcccCCCeEEEEecCCCce-eEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCC
Q 017296 165 AVAGEQLSEVEIWDLNTAER-CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243 (374)
Q Consensus 165 ~~~~~~d~~i~vWd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~ 243 (374)
+ .+..-+...+||++++.. ...+..+ .-+.. .+ .+.| .....+++++.|++.+|||+|.-..
T Consensus 295 l-~~~~~G~f~~iD~R~~~s~~~~~~lh--------~kKI~--sv---~~NP---~~p~~laT~s~D~T~kIWD~R~l~~ 357 (498)
T KOG4328|consen 295 L-FGDNVGNFNVIDLRTDGSEYENLRLH--------KKKIT--SV---ALNP---VCPWFLATASLDQTAKIWDLRQLRG 357 (498)
T ss_pred E-EeecccceEEEEeecCCccchhhhhh--------hcccc--ee---ecCC---CCchheeecccCcceeeeehhhhcC
Confidence 2 333445889999998764 2211111 00111 11 2222 2334689999999999999975321
Q ss_pred ---ceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcC----CCCCeEEEEEeeecCCCC--eEEEEECCCCCEEE
Q 017296 244 ---PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD----HSTGSCVIKKEINLERPG--ISGTSIRPDSKIAA 314 (374)
Q Consensus 244 ---~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~----~~~~~~~~~~~~~~~~~~--v~~~~~sp~~~~l~ 314 (374)
|+...-.|..+|.+..|+|.+..+++.+.|..|++||.. .....+.+ .....+... ...+.|.|+..+|+
T Consensus 358 K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I-~Hn~~t~RwlT~fKA~W~P~~~li~ 436 (498)
T KOG4328|consen 358 KASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTI-PHNNRTGRWLTPFKAAWDPDYNLIV 436 (498)
T ss_pred CCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCcccee-eccCcccccccchhheeCCCccEEE
Confidence 223334699999999999988889999999999999973 11111111 111111111 33568999999999
Q ss_pred EEeCCCeEEEEEccCCeEEEEecccCC-ceEE-EEEeCCCC-EEEEEeCCCcEEEec
Q 017296 315 TAGWDRRVRIYNYRKGSALAILKYHHA-TCNA-VSFSSDCK-LMASASEDSTVALWE 368 (374)
Q Consensus 315 s~~~dg~v~iwd~~~~~~~~~~~~h~~-~v~~-v~~sp~~~-~las~s~D~~v~~W~ 368 (374)
+|-.-+.|-|+|-..++.+..+-.... .|.+ ..|+|-+. ++|-++.-|.|.+|.
T Consensus 437 vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 437 VGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT 493 (498)
T ss_pred EeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEe
Confidence 999999999999877665555433332 4544 47999888 555557778888875
No 124
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.85 E-value=3.3e-19 Score=163.21 Aligned_cols=299 Identities=19% Similarity=0.249 Sum_probs=190.7
Q ss_pred EEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCccc--ceeeeeeeee---ceeeeEEeccCCccccceeeeccccC
Q 017296 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH--RTVSSSWVHS---AAHGIVSVATGPSIGLNKVISQGRDG 86 (374)
Q Consensus 12 ~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~s~~~D~ 86 (374)
+++.||.+.|+++.|+|++..|+|+|.|+++.+|...+. -.+....... ...+...+-|++ +++.+++-|.-|
T Consensus 261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~--n~~~ii~~g~~G 338 (764)
T KOG1063|consen 261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSP--NSNVIIAHGRTG 338 (764)
T ss_pred hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcC--CCCEEEEecccC
Confidence 345699999999999999999999999999999987542 2222211111 123455566666 557788889999
Q ss_pred eEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEE
Q 017296 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (374)
Q Consensus 87 ~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (374)
-+++|.-.....- .....-++|...+ . +....+.+.|++
T Consensus 339 g~hlWkt~d~~~w----~~~~~iSGH~~~V---------------------------~---------dv~W~psGeflL- 377 (764)
T KOG1063|consen 339 GFHLWKTKDKTFW----TQEPVISGHVDGV---------------------------K---------DVDWDPSGEFLL- 377 (764)
T ss_pred cEEEEeccCccce----eeccccccccccc---------------------------e---------eeeecCCCCEEE-
Confidence 9999993321100 0001111111100 0 001122334444
Q ss_pred cccCCCeEEEEecCCCcee-EEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCC----
Q 017296 167 AGEQLSEVEIWDLNTAERC-TRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP---- 241 (374)
Q Consensus 167 ~~~~d~~i~vWd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~---- 241 (374)
+.+.|.|-|++-.-..+.. -.+.. ++.-++-+....+.+. ...+++|.+...+|+|+....
T Consensus 378 svs~DQTTRlFa~wg~q~~wHEiaR----------PQiHGyDl~c~~~vn~----~~~FVSgAdEKVlRvF~aPk~fv~~ 443 (764)
T KOG1063|consen 378 SVSLDQTTRLFARWGRQQEWHEIAR----------PQIHGYDLTCLSFVNE----DLQFVSGADEKVLRVFEAPKSFVKS 443 (764)
T ss_pred Eeccccceeeecccccccceeeecc----------cccccccceeeehccC----CceeeecccceeeeeecCcHHHHHH
Confidence 4556788888865421111 01110 1111111111122221 123666666666677664210
Q ss_pred ---------------------------CC-------------------------------c-------------eeeeec
Q 017296 242 ---------------------------GI-------------------------------P-------------LTAMKV 250 (374)
Q Consensus 242 ---------------------------~~-------------------------------~-------------~~~~~~ 250 (374)
.+ | ...+-|
T Consensus 444 l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYG 523 (764)
T KOG1063|consen 444 LMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYG 523 (764)
T ss_pred HHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhcc
Confidence 00 0 012346
Q ss_pred CccCeEEEEEecCCCceEEEecC-----CeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 017296 251 HLEPVLCLSIDESCNGGISGGAD-----QKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIY 325 (374)
Q Consensus 251 h~~~v~~~~~~~~~~~~~s~s~D-----~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iw 325 (374)
|...|.+++++|+++.+||++.. .-|+||+... .....++..|...|+.++||||+++|++.+.|+++.+|
T Consensus 524 HGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~----W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~ 599 (764)
T KOG1063|consen 524 HGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN----WLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLY 599 (764)
T ss_pred CceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccc----hhhhheecccceEEEEEEECCCCcEEEEeecCceEEee
Confidence 88899999999999988887654 4789997643 33344677888899999999999999999999999999
Q ss_pred EccCCe----EEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCC
Q 017296 326 NYRKGS----ALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 326 d~~~~~----~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~ 371 (374)
...... .++..+.|..-|+...|+|+++++||+|+|++|++|....
T Consensus 600 ~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~ 649 (764)
T KOG1063|consen 600 EVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPD 649 (764)
T ss_pred eeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccC
Confidence 885432 2445788999999999999999999999999999998743
No 125
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=7.7e-20 Score=171.00 Aligned_cols=208 Identities=22% Similarity=0.313 Sum_probs=140.6
Q ss_pred CCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCe
Q 017296 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (374)
Q Consensus 8 ~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~ 87 (374)
.+|+..|.||.+.|..|.|+. ..+|+|+|.|.|||+|++...+|+..+. |. .-|.|++|.|. |.++++||+-|+.
T Consensus 359 ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~-Hn--dfVTcVaFnPv-DDryFiSGSLD~K 433 (712)
T KOG0283|consen 359 EKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS-HN--DFVTCVAFNPV-DDRYFISGSLDGK 433 (712)
T ss_pred ccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEEe-cC--CeeEEEEeccc-CCCcEeecccccc
Confidence 379999999999999999985 5699999999999999999888887763 54 45899999996 5689999999999
Q ss_pred EEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEc
Q 017296 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (374)
Q Consensus 88 vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (374)
+|||++...+
T Consensus 434 vRiWsI~d~~---------------------------------------------------------------------- 443 (712)
T KOG0283|consen 434 VRLWSISDKK---------------------------------------------------------------------- 443 (712)
T ss_pred eEEeecCcCe----------------------------------------------------------------------
Confidence 9999996432
Q ss_pred ccCCCeEEEE-ecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCcee
Q 017296 168 GEQLSEVEIW-DLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (374)
Q Consensus 168 ~~~d~~i~vW-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~ 246 (374)
|-.| |++ + ++.++ .|.|+ | ...++|+-+|.+++|+.+.. +...
T Consensus 444 ------Vv~W~Dl~--~----------------------lITAv-cy~Pd---G-k~avIGt~~G~C~fY~t~~l-k~~~ 487 (712)
T KOG0283|consen 444 ------VVDWNDLR--D----------------------LITAV-CYSPD---G-KGAVIGTFNGYCRFYDTEGL-KLVS 487 (712)
T ss_pred ------eEeehhhh--h----------------------hheeE-EeccC---C-ceEEEEEeccEEEEEEccCC-eEEE
Confidence 1111 000 0 00000 12221 1 12445666666666665431 1111
Q ss_pred ee---------ecCccCeEEEEEecCCC-ceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEE
Q 017296 247 AM---------KVHLEPVLCLSIDESCN-GGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATA 316 (374)
Q Consensus 247 ~~---------~~h~~~v~~~~~~~~~~-~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~ 316 (374)
.. ..|. .|+.+.|.|... -++..+.|..||++|++...-.+.+....+. ..-...+|+.||++|++|
T Consensus 488 ~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~--~SQ~~Asfs~Dgk~IVs~ 564 (712)
T KOG0283|consen 488 DFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNT--SSQISASFSSDGKHIVSA 564 (712)
T ss_pred eeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccC--CcceeeeEccCCCEEEEe
Confidence 11 1133 788888864332 4788999999999998644333332221111 123457899999999999
Q ss_pred eCCCeEEEEEccC
Q 017296 317 GWDRRVRIYNYRK 329 (374)
Q Consensus 317 ~~dg~v~iwd~~~ 329 (374)
++|..|.+|+...
T Consensus 565 seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 565 SEDSWVYIWKNDS 577 (712)
T ss_pred ecCceEEEEeCCC
Confidence 9999999999743
No 126
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.5e-19 Score=146.26 Aligned_cols=236 Identities=18% Similarity=0.178 Sum_probs=157.0
Q ss_pred CCCCCC-CCeEEeecCCCceeEEEEeC--CCCEEEEecCCCcEEEEeCcccce--eeeeeeeeceeeeEEeccCCccccc
Q 017296 3 KRPPPP-DPVAVLRGHRASVTDVCFHQ--TKPILFAGTTGGELRIWDTVQHRT--VSSSWVHSAAHGIVSVATGPSIGLN 77 (374)
Q Consensus 3 ~~~~~~-~~~~~l~gH~~~V~~l~~~~--~~~~l~s~s~D~~v~vWd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (374)
.|++.. +++.+|.||++||..++|.. .|.+|+|+|.||.|.||.-+.|+. ......|. ..+.++++.|..-+-
T Consensus 40 v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~--~SVNsV~wapheygl 117 (299)
T KOG1332|consen 40 VRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHS--ASVNSVAWAPHEYGL 117 (299)
T ss_pred EcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhc--ccceeecccccccce
Confidence 355555 89999999999999999954 799999999999999999888864 33334454 347788888876667
Q ss_pred eeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCC
Q 017296 78 KVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVP 157 (374)
Q Consensus 78 ~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (374)
.|+++++||.|++.++++......+.+ ...|- + .++
T Consensus 118 ~LacasSDG~vsvl~~~~~g~w~t~ki----~~aH~------------------------~------Gvn---------- 153 (299)
T KOG1332|consen 118 LLACASSDGKVSVLTYDSSGGWTTSKI----VFAHE------------------------I------GVN---------- 153 (299)
T ss_pred EEEEeeCCCcEEEEEEcCCCCccchhh----hhccc------------------------c------ccc----------
Confidence 899999999999999876311110000 00000 0 000
Q ss_pred CCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEe
Q 017296 158 AEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWD 237 (374)
Q Consensus 158 ~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwd 237 (374)
-.-|...+. +. . .... .. ......|++|..|+.|+||+
T Consensus 154 ----------------sVswapa~~------~g-----~-~~~~---~~-----------~~~~krlvSgGcDn~VkiW~ 191 (299)
T KOG1332|consen 154 ----------------SVSWAPASA------PG-----S-LVDQ---GP-----------AAKVKRLVSGGCDNLVKIWK 191 (299)
T ss_pred ----------------eeeecCcCC------Cc-----c-cccc---Cc-----------ccccceeeccCCccceeeee
Confidence 000100000 00 0 0000 00 00112589999999999999
Q ss_pred ccCCC-CceeeeecCccCeEEEEEecCC----CceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCE
Q 017296 238 IRNPG-IPLTAMKVHLEPVLCLSIDESC----NGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKI 312 (374)
Q Consensus 238 l~~~~-~~~~~~~~h~~~v~~~~~~~~~----~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 312 (374)
..+.. ..-.++.+|.+.|+.+++.|.. .+++++|.||++.+|..+...+...... +......+..++||+.|.+
T Consensus 192 ~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tl-l~~f~~~~w~vSWS~sGn~ 270 (299)
T KOG1332|consen 192 FDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTL-LEEFPDVVWRVSWSLSGNI 270 (299)
T ss_pred cCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccc-cccCCcceEEEEEeccccE
Confidence 87532 1223478999999999997653 3569999999999998874433332111 1112356899999999999
Q ss_pred EEEEeCCCeEEEEEc
Q 017296 313 AATAGWDRRVRIYNY 327 (374)
Q Consensus 313 l~s~~~dg~v~iwd~ 327 (374)
|+.++.|+.|.+|--
T Consensus 271 LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 271 LAVSGGDNKVTLWKE 285 (299)
T ss_pred EEEecCCcEEEEEEe
Confidence 999999999999954
No 127
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.84 E-value=6e-18 Score=151.31 Aligned_cols=269 Identities=12% Similarity=0.124 Sum_probs=165.6
Q ss_pred CCCeEEeecCCCceeEEEEeCCCCEE-EEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCcccccee-eecccc
Q 017296 8 PDPVAVLRGHRASVTDVCFHQTKPIL-FAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKV-ISQGRD 85 (374)
Q Consensus 8 ~~~~~~l~gH~~~V~~l~~~~~~~~l-~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~D 85 (374)
.+++..+.+|.. +.+++|+|+++.+ ++++.|+.|++||..+++.+..+..+. ....+++++ +++.+ ++++.|
T Consensus 21 ~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~~~--~g~~l~~~~~~~ 94 (300)
T TIGR03866 21 LEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP---DPELFALHP--NGKILYIANEDD 94 (300)
T ss_pred CceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC---CccEEEECC--CCCEEEEEcCCC
Confidence 356777777654 6789999999876 577889999999998887665544332 233455665 44555 456678
Q ss_pred CeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEE
Q 017296 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA 165 (374)
Q Consensus 86 ~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (374)
+++++||+.+++... .+... . . +.. + .+ .+++.+++
T Consensus 95 ~~l~~~d~~~~~~~~----~~~~~-------------~--------~-------~~~-~----------~~-~~dg~~l~ 130 (300)
T TIGR03866 95 NLVTVIDIETRKVLA----EIPVG-------------V--------E-------PEG-M----------AV-SPDGKIVV 130 (300)
T ss_pred CeEEEEECCCCeEEe----EeeCC-------------C--------C-------cce-E----------EE-CCCCCEEE
Confidence 999999998653110 00000 0 0 000 0 01 12234444
Q ss_pred EcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCce
Q 017296 166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL 245 (374)
Q Consensus 166 ~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~ 245 (374)
++......+.+||+++++....+.... .... ..+.+ .+...++++..++.|++||+++. ...
T Consensus 131 ~~~~~~~~~~~~d~~~~~~~~~~~~~~-----------~~~~---~~~s~---dg~~l~~~~~~~~~v~i~d~~~~-~~~ 192 (300)
T TIGR03866 131 NTSETTNMAHFIDTKTYEIVDNVLVDQ-----------RPRF---AEFTA---DGKELWVSSEIGGTVSVIDVATR-KVI 192 (300)
T ss_pred EEecCCCeEEEEeCCCCeEEEEEEcCC-----------CccE---EEECC---CCCEEEEEcCCCCEEEEEEcCcc-eee
Confidence 444444567888998876554332110 0011 12322 23323345567999999999763 233
Q ss_pred eeeecCc-----c--CeEEEEEecCCCceE-EEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEE-
Q 017296 246 TAMKVHL-----E--PVLCLSIDESCNGGI-SGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATA- 316 (374)
Q Consensus 246 ~~~~~h~-----~--~v~~~~~~~~~~~~~-s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~- 316 (374)
..+..+. . ....+.+++++..++ +.+.++.+.+||++.. ... .... +...+.+++|+|++++|+++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~--~~~--~~~~-~~~~~~~~~~~~~g~~l~~~~ 267 (300)
T TIGR03866 193 KKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY--EVL--DYLL-VGQRVWQLAFTPDEKYLLTTN 267 (300)
T ss_pred eeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC--cEE--EEEE-eCCCcceEEECCCCCEEEEEc
Confidence 3332221 1 234577888887644 4456778999998643 222 1111 23458899999999998876
Q ss_pred eCCCeEEEEEccCCeEEEEecccCCceEEEEEeC
Q 017296 317 GWDRRVRIYNYRKGSALAILKYHHATCNAVSFSS 350 (374)
Q Consensus 317 ~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp 350 (374)
+.+++|++||+++++.+.+++.+ ...+.++|+|
T Consensus 268 ~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 268 GVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred CCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 56899999999999998888754 5668888876
No 128
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=1.2e-20 Score=173.26 Aligned_cols=239 Identities=21% Similarity=0.314 Sum_probs=183.0
Q ss_pred EEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEE
Q 017296 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (374)
Q Consensus 12 ~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvw 91 (374)
+.+..|...|.++..-..++.+++|+.|-.+.+|.....-.+..+.+|.. .|-++.|.. .+..++.|+.||+||+|
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hes--pIeSl~f~~--~E~LlaagsasgtiK~w 97 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHES--PIESLTFDT--SERLLAAGSASGTIKVW 97 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCC--cceeeecCc--chhhhcccccCCceeee
Confidence 34567999999999877788999999999999999876666667777763 477777776 34577788888999999
Q ss_pred ecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCC
Q 017296 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL 171 (374)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 171 (374)
|+++++..+ +. .|..+
T Consensus 98 DleeAk~vr-------tL---------------------------------------------------------tgh~~ 113 (825)
T KOG0267|consen 98 DLEEAKIVR-------TL---------------------------------------------------------TGHLL 113 (825)
T ss_pred ehhhhhhhh-------hh---------------------------------------------------------hcccc
Confidence 987653110 00 00000
Q ss_pred CeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecC
Q 017296 172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH 251 (374)
Q Consensus 172 ~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h 251 (374)
+.++| .|.| -..+.++|+.|..+++||.+..+ +...+++|
T Consensus 114 ~~~sv-----------------------------------~f~P----~~~~~a~gStdtd~~iwD~Rk~G-c~~~~~s~ 153 (825)
T KOG0267|consen 114 NITSV-----------------------------------DFHP----YGEFFASGSTDTDLKIWDIRKKG-CSHTYKSH 153 (825)
T ss_pred Cccee-----------------------------------eecc----ceEEeccccccccceehhhhccC-ceeeecCC
Confidence 00100 0111 01135678999999999998644 57778899
Q ss_pred ccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCe
Q 017296 252 LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGS 331 (374)
Q Consensus 252 ~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~ 331 (374)
...+.++.|.|++.++++++.|.++++||+..+ .+..+++.|...+.++.|+|..-++++|+.|++|++||+++.+
T Consensus 154 ~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag----k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe 229 (825)
T KOG0267|consen 154 TRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAG----KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFE 229 (825)
T ss_pred cceeEEEeecCCCceeeccCCcceeeeeccccc----ccccccccccccccccccCchhhhhccCCCCceeeeeccceeE
Confidence 999999999999999999999999999998532 2345666677778889999999999999999999999999988
Q ss_pred EEEEecccCCceEEEEEeCCCCEEEEEeCCC
Q 017296 332 ALAILKYHHATCNAVSFSSDCKLMASASEDS 362 (374)
Q Consensus 332 ~~~~~~~h~~~v~~v~~sp~~~~las~s~D~ 362 (374)
.+.........|-+++|+|+++.+++|-++.
T Consensus 230 ~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 230 VISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred EeeccCCccCCceeeeecCCceeeecCchhh
Confidence 8887777778999999999999998876554
No 129
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.83 E-value=1.9e-18 Score=143.44 Aligned_cols=187 Identities=20% Similarity=0.253 Sum_probs=128.5
Q ss_pred EEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCC
Q 017296 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243 (374)
Q Consensus 164 ~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~ 243 (374)
++.+++.|.+++|||..|-+....+.......+...+ .+.+. .-++++|..|-+|++-|+.+. .
T Consensus 116 mFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamS----p~a~s-----------HcLiA~gtr~~~VrLCDi~SG-s 179 (397)
T KOG4283|consen 116 MFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMS----PMAMS-----------HCLIAAGTRDVQVRLCDIASG-S 179 (397)
T ss_pred eeecccccceEEEeecccceeeEEeecCceeehhhcC----hhhhc-----------ceEEEEecCCCcEEEEeccCC-c
Confidence 4678889999999999998766555433222111111 11111 125788999999999999874 4
Q ss_pred ceeeeecCccCeEEEEEecCCCc-eEEEecCCeEEEEEcCCCCCeE-EEE----------EeeecCCCCeEEEEECCCCC
Q 017296 244 PLTAMKVHLEPVLCLSIDESCNG-GISGGADQKIVLYNLDHSTGSC-VIK----------KEINLERPGISGTSIRPDSK 311 (374)
Q Consensus 244 ~~~~~~~h~~~v~~~~~~~~~~~-~~s~s~D~~i~lwd~~~~~~~~-~~~----------~~~~~~~~~v~~~~~sp~~~ 311 (374)
.-.+++||.+.|..+.++|.... |++||.||.||+||++...+-. .+. +....|...+.+++|+.++.
T Consensus 180 ~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~ 259 (397)
T KOG4283|consen 180 FSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDAR 259 (397)
T ss_pred ceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccch
Confidence 56789999999999999886554 5899999999999997543321 111 11234566789999999999
Q ss_pred EEEEEeCCCeEEEEEccCCeEEE----E------------e-cccCCceEEEEEeCCC--CEEEEEeCCCcEEEecC
Q 017296 312 IAATAGWDRRVRIYNYRKGSALA----I------------L-KYHHATCNAVSFSSDC--KLMASASEDSTVALWEL 369 (374)
Q Consensus 312 ~l~s~~~dg~v~iwd~~~~~~~~----~------------~-~~h~~~v~~v~~sp~~--~~las~s~D~~v~~W~~ 369 (374)
++++.+.|.++++|+...|+--. . . .+|... +.+-|.+ -+|.+..+-..|+.|+.
T Consensus 260 ~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~v---fv~~p~~~~lall~~~sgs~ir~l~~ 333 (397)
T KOG4283|consen 260 YLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDV---FVLFPNDGSLALLNLLEGSFVRRLST 333 (397)
T ss_pred hhhhccCccceEEeecccCcccccccccccccccccceEEEeecccce---EEEEecCCeEEEEEccCceEEEeeec
Confidence 99999999999999998764210 0 0 111111 1223432 36677778888888875
No 130
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=2.4e-19 Score=156.31 Aligned_cols=212 Identities=22% Similarity=0.349 Sum_probs=153.8
Q ss_pred eecCCCceeEEEEeC-CCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEe
Q 017296 14 LRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWD 92 (374)
Q Consensus 14 l~gH~~~V~~l~~~~-~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd 92 (374)
..||++.|.+|.|+. -.++|+|||.|.+|++||+.+|++..++..|. ..|.++.|.+. ....|++|+.|++|++.|
T Consensus 239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~--k~Vq~l~wh~~-~p~~LLsGs~D~~V~l~D 315 (463)
T KOG0270|consen 239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHG--KKVQTLEWHPY-EPSVLLSGSYDGTVALKD 315 (463)
T ss_pred cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcC--CceeEEEecCC-CceEEEeccccceEEeee
Confidence 348999999999986 46789999999999999999999988877554 35888888875 347899999999999999
Q ss_pred cCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCC
Q 017296 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLS 172 (374)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 172 (374)
.+...... ..+-+ .| +-
T Consensus 316 ~R~~~~s~------------------------------------------------------------~~wk~-~g--~V 332 (463)
T KOG0270|consen 316 CRDPSNSG------------------------------------------------------------KEWKF-DG--EV 332 (463)
T ss_pred ccCccccC------------------------------------------------------------ceEEe-cc--ce
Confidence 87421000 00000 00 00
Q ss_pred eEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCc
Q 017296 173 EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHL 252 (374)
Q Consensus 173 ~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~ 252 (374)
....|+-.+ ...++++++||+|+-+|+|+++.++.+++.|.
T Consensus 333 Ekv~w~~~s---------------------------------------e~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd 373 (463)
T KOG0270|consen 333 EKVAWDPHS---------------------------------------ENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHD 373 (463)
T ss_pred EEEEecCCC---------------------------------------ceeEEEecCCceEEeeecCCCCCceeEEEecc
Confidence 122332110 11367889999999999999989999999999
Q ss_pred cCeEEEEEecCCC-ceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCC-EEEEEeCCCeEEEEEccCC
Q 017296 253 EPVLCLSIDESCN-GGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSK-IAATAGWDRRVRIYNYRKG 330 (374)
Q Consensus 253 ~~v~~~~~~~~~~-~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~~~dg~v~iwd~~~~ 330 (374)
++|.+++++..-+ .++++|.|+.+++|++.....+..-...++- ....+.++.|+-. ++|.||..+.++|||+.+.
T Consensus 374 ~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~--~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 374 DEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKL--GRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred CCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccc--cceeecccCCCcceEEEecCccceEEEeecccC
Confidence 9999999975433 4678999999999999866554332222221 2355666777644 5778888889999999775
Q ss_pred eE
Q 017296 331 SA 332 (374)
Q Consensus 331 ~~ 332 (374)
..
T Consensus 452 ~~ 453 (463)
T KOG0270|consen 452 SP 453 (463)
T ss_pred hh
Confidence 43
No 131
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.83 E-value=1.7e-19 Score=154.23 Aligned_cols=199 Identities=21% Similarity=0.385 Sum_probs=141.8
Q ss_pred CCceEEEcccCCCeEEEEecCCCceeEEeccCc-----cCCCCCcC---CCCCcceeEEEeeecCCCCCceEEEEEecCC
Q 017296 160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNS-----CGGSPNFS---SKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG 231 (374)
Q Consensus 160 ~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~-----~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg 231 (374)
+...++++-+..|.|+|||+..-- ..+.... ....+.|. +.+.++.+ .++|. ..+ .+++|.--+
T Consensus 163 ~~~~~~aswse~G~V~Vw~l~~~l--~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~L---dWSp~-~~g--~LlsGDc~~ 234 (440)
T KOG0302|consen 163 GNEVLCASWSENGRVQVWDLAPHL--NALSEPGLEVKDSEFRPLFTFNGHKGEGYGL---DWSPI-KTG--RLLSGDCVK 234 (440)
T ss_pred CCcceeeeecccCcEEEEEchhhh--hhhcCccccccccccCceEEecccCccceee---ecccc-ccc--ccccCcccc
Confidence 345678888899999999986421 1111100 00011111 11122211 12221 112 477887788
Q ss_pred cEEEEeccCCC--CceeeeecCccCeEEEEEecCCC-ceEEEecCCeEEEEEcCCCCC-eEEEEEeeecCCCCeEEEEEC
Q 017296 232 SILVWDIRNPG--IPLTAMKVHLEPVLCLSIDESCN-GGISGGADQKIVLYNLDHSTG-SCVIKKEINLERPGISGTSIR 307 (374)
Q Consensus 232 ~i~iwdl~~~~--~~~~~~~~h~~~v~~~~~~~~~~-~~~s~s~D~~i~lwd~~~~~~-~~~~~~~~~~~~~~v~~~~~s 307 (374)
.|++|...+.. ..-..+.+|+..|..+.++|... .|+|+|.||+|++||++.... .+++. ++|...|..++|+
T Consensus 235 ~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~---kAh~sDVNVISWn 311 (440)
T KOG0302|consen 235 GIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST---KAHNSDVNVISWN 311 (440)
T ss_pred ceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe---eccCCceeeEEcc
Confidence 99999986632 12334668999999999987554 568999999999999986532 23333 6677889999999
Q ss_pred CCCCEEEEEeCCCeEEEEEccC---CeEEEEecccCCceEEEEEeCCCC-EEEEEeCCCcEEEecC
Q 017296 308 PDSKIAATAGWDRRVRIYNYRK---GSALAILKYHHATCNAVSFSSDCK-LMASASEDSTVALWEL 369 (374)
Q Consensus 308 p~~~~l~s~~~dg~v~iwd~~~---~~~~~~~~~h~~~v~~v~~sp~~~-~las~s~D~~v~~W~~ 369 (374)
....+||+|+.||+++|||++. ++++++++.|..+|++|.|+|... .|+.+|+|..|.|||+
T Consensus 312 r~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDl 377 (440)
T KOG0302|consen 312 RREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDL 377 (440)
T ss_pred CCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEe
Confidence 9888999999999999999975 467789999999999999999654 7888899999999998
No 132
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.8e-18 Score=151.60 Aligned_cols=288 Identities=20% Similarity=0.296 Sum_probs=186.4
Q ss_pred CCceeEEEEeCCCCEEEEecCCCcEEEEeCcccc--eeeeeeeeeceeeeEEeccCCccccc-eeeeccccCeEEEEecC
Q 017296 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR--TVSSSWVHSAAHGIVSVATGPSIGLN-KVISQGRDGTVKCWDIE 94 (374)
Q Consensus 18 ~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~D~~vrvwd~~ 94 (374)
.++|++|.|+|...+|++|+.|++++++.+.... .+..+ |.....+.+.+|.+ .+. .+++++.-..+-.||+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~--~l~~fPi~~a~f~p--~G~~~i~~s~rrky~ysyDle 288 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSI--HLEKFPIQKAEFAP--NGHSVIFTSGRRKYLYSYDLE 288 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheee--eeccCccceeeecC--CCceEEEecccceEEEEeecc
Confidence 5899999999999999999999999999974322 23332 44445678888887 344 88899999999999998
Q ss_pred CCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeE
Q 017296 95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEV 174 (374)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 174 (374)
+++... ++.+.... ......++ + .....+++++|. .+.|
T Consensus 289 ~ak~~k------------------~~~~~g~e-----~~~~e~Fe----------------V-Shd~~fia~~G~-~G~I 327 (514)
T KOG2055|consen 289 TAKVTK------------------LKPPYGVE-----EKSMERFE----------------V-SHDSNFIAIAGN-NGHI 327 (514)
T ss_pred cccccc------------------ccCCCCcc-----cchhheeE----------------e-cCCCCeEEEccc-CceE
Confidence 875321 00000000 00000000 0 122346666665 5788
Q ss_pred EEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCcc-
Q 017296 175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLE- 253 (374)
Q Consensus 175 ~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~- 253 (374)
.+--..|++.+..+..+. .+... .|. +.+ ..+++.+.+|.|.+||++.+. .+..+.. .+
T Consensus 328 ~lLhakT~eli~s~KieG-------------~v~~~-~fs---Sds-k~l~~~~~~GeV~v~nl~~~~-~~~rf~D-~G~ 387 (514)
T KOG2055|consen 328 HLLHAKTKELITSFKIEG-------------VVSDF-TFS---SDS-KELLASGGTGEVYVWNLRQNS-CLHRFVD-DGS 387 (514)
T ss_pred Eeehhhhhhhhheeeecc-------------EEeeE-EEe---cCC-cEEEEEcCCceEEEEecCCcc-eEEEEee-cCc
Confidence 888877877666554321 11111 122 233 357777889999999998753 3443332 22
Q ss_pred -CeEEEEEecCCCceEEEecCCeEEEEEcCCCC--CeEEEEEeeecCCCCeEEEEECCCCCEEEEEeC--CCeEEEEEcc
Q 017296 254 -PVLCLSIDESCNGGISGGADQKIVLYNLDHST--GSCVIKKEINLERPGISGTSIRPDSKIAATAGW--DRRVRIYNYR 328 (374)
Q Consensus 254 -~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~--~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~--dg~v~iwd~~ 328 (374)
.-++++.+.++.++|+||..|.|.+||.+.-- ........+..-...|++++|+||+++||.++. +..+|+-.+-
T Consensus 388 v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvP 467 (514)
T KOG2055|consen 388 VHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVP 467 (514)
T ss_pred cceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEecc
Confidence 23445556777899999999999999965310 000011111222346899999999999876654 6678887765
Q ss_pred CCeEEEEec---ccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 329 KGSALAILK---YHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 329 ~~~~~~~~~---~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
+.....-+. ..-+.|.|++|||.+-+||.|-++|.|.+|.+-
T Consensus 468 S~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 468 SCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 544333222 223578999999999999999999999999873
No 133
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=2.5e-19 Score=160.52 Aligned_cols=263 Identities=21% Similarity=0.357 Sum_probs=163.4
Q ss_pred CeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcc--------cceeeeeeeeeceeeeEEeccCCccccceeee
Q 017296 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ--------HRTVSSSWVHSAAHGIVSVATGPSIGLNKVIS 81 (374)
Q Consensus 10 ~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 81 (374)
+..+++.|.+.|+.++|++....|++++.|+++++|+++. -+++.++.+|.. .|.|++... .+.++.|
T Consensus 286 ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~g--PVl~v~v~~--n~~~~ys 361 (577)
T KOG0642|consen 286 IKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEG--PVLCVVVPS--NGEHCYS 361 (577)
T ss_pred eeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccC--ceEEEEecC--CceEEEe
Confidence 5569999999999999999999999999999999999832 235667777764 477877776 5679999
Q ss_pred ccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCC
Q 017296 82 QGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGP 161 (374)
Q Consensus 82 ~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (374)
||-||+||.|++..+.-.... + ++.. . .
T Consensus 362 gg~Dg~I~~w~~p~n~dp~ds---------~--------dp~v-------------------l---------------~- 389 (577)
T KOG0642|consen 362 GGIDGTIRCWNLPPNQDPDDS---------Y--------DPSV-------------------L---------------S- 389 (577)
T ss_pred eccCceeeeeccCCCCCcccc---------c--------Ccch-------------------h---------------c-
Confidence 999999999998732110000 0 0000 0 0
Q ss_pred ceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCC
Q 017296 162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 241 (374)
Q Consensus 162 ~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~ 241 (374)
. .+.|-.| .+|-+. +. .....|++++.||++++|+....
T Consensus 390 ~--~l~Ghtd---avw~l~--------------------------------~s----~~~~~Llscs~DgTvr~w~~~~~ 428 (577)
T KOG0642|consen 390 G--TLLGHTD---AVWLLA--------------------------------LS----STKDRLLSCSSDGTVRLWEPTEE 428 (577)
T ss_pred c--ceecccc---ceeeee--------------------------------ec----ccccceeeecCCceEEeeccCCc
Confidence 0 0011111 122110 10 11124777888888888877542
Q ss_pred CCc-eeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCC-CCeEEEEEeee-----cCCCCeEEEEECCCCCEEE
Q 017296 242 GIP-LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS-TGSCVIKKEIN-----LERPGISGTSIRPDSKIAA 314 (374)
Q Consensus 242 ~~~-~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~-~~~~~~~~~~~-----~~~~~v~~~~~sp~~~~l~ 314 (374)
..+ +..-+.|.- -..+.+-.... +-...+.+.+.+++... .++........ .....+.-+..+|+..+.+
T Consensus 429 ~~~~f~~~~e~g~-Plsvd~~ss~~--a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~ 505 (577)
T KOG0642|consen 429 SPCTFGEPKEHGY-PLSVDRTSSRP--AHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITF 505 (577)
T ss_pred CccccCCccccCC-cceEeeccchh--HhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeE
Confidence 211 111111221 22233311110 11111222222222211 01111100000 0112355677889999999
Q ss_pred EEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 315 TAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 315 s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
++..|+.|+++|..+++.+....+|...++++++-|+|.+|++++.|+.|++|++..+
T Consensus 506 ~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 506 TAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred ecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccch
Confidence 9999999999999999999999999999999999999999999999999999998643
No 134
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.82 E-value=4.9e-18 Score=145.39 Aligned_cols=252 Identities=18% Similarity=0.280 Sum_probs=168.3
Q ss_pred EEeecCCCceeEEEEeCCC--CEEEEecCCCcEEEEeCcc----------------cceeeeeeeeeceeeeEEeccCCc
Q 017296 12 AVLRGHRASVTDVCFHQTK--PILFAGTTGGELRIWDTVQ----------------HRTVSSSWVHSAAHGIVSVATGPS 73 (374)
Q Consensus 12 ~~l~gH~~~V~~l~~~~~~--~~l~s~s~D~~v~vWd~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~ 73 (374)
....+|.+.|+.++-.+-+ .+.++=++.|.|.|||+.. .+++.++.+|. ...+++.|++.
T Consensus 145 ~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk--~EGy~LdWSp~ 222 (440)
T KOG0302|consen 145 MKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHK--GEGYGLDWSPI 222 (440)
T ss_pred ccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccC--ccceeeecccc
Confidence 3445799999999888765 5677778999999999642 24556666665 23567777774
Q ss_pred cccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCC
Q 017296 74 IGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSK 153 (374)
Q Consensus 74 ~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (374)
.. ..|+||---+.|++|.+.+|.-. + . ..|+
T Consensus 223 ~~-g~LlsGDc~~~I~lw~~~~g~W~------v-------d-----~~Pf------------------------------ 253 (440)
T KOG0302|consen 223 KT-GRLLSGDCVKGIHLWEPSTGSWK------V-------D-----QRPF------------------------------ 253 (440)
T ss_pred cc-cccccCccccceEeeeeccCcee------e-------c-----Cccc------------------------------
Confidence 43 35677776778888888765210 0 0 0000
Q ss_pred CCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcE
Q 017296 154 DDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSI 233 (374)
Q Consensus 154 ~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i 233 (374)
+| .... +..+ .++ |+. ...++++|-||+|
T Consensus 254 -------------~g-H~~S-----------VEDL---------qWS--------------ptE---~~vfaScS~DgsI 282 (440)
T KOG0302|consen 254 -------------TG-HTKS-----------VEDL---------QWS--------------PTE---DGVFASCSCDGSI 282 (440)
T ss_pred -------------cc-cccc-----------hhhh---------ccC--------------Ccc---CceEEeeecCceE
Confidence 00 0000 0000 011 110 1147889999999
Q ss_pred EEEeccCC-CCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCC-CC
Q 017296 234 LVWDIRNP-GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPD-SK 311 (374)
Q Consensus 234 ~iwdl~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~ 311 (374)
+|||+|.. ..+....+.|...|+-++++.....+++|+.||++++||++..+.. .....++.|...|+++.|+|. ..
T Consensus 283 rIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~-~pVA~fk~Hk~pItsieW~p~e~s 361 (440)
T KOG0302|consen 283 RIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSG-QPVATFKYHKAPITSIEWHPHEDS 361 (440)
T ss_pred EEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCC-CcceeEEeccCCeeEEEeccccCc
Confidence 99999875 2233344889999999999988878899999999999999764332 123456778899999999995 55
Q ss_pred EEEEEeCCCeEEEEEccCCe--------EE--------EEeccc--CCceEEEEEeCCCC-EEEEEeCCCcEEE
Q 017296 312 IAATAGWDRRVRIYNYRKGS--------AL--------AILKYH--HATCNAVSFSSDCK-LMASASEDSTVAL 366 (374)
Q Consensus 312 ~l~s~~~dg~v~iwd~~~~~--------~~--------~~~~~h--~~~v~~v~~sp~~~-~las~s~D~~v~~ 366 (374)
.|+++|.|..|.+||+..-. .. +.+--| ...+..|.|++.-. +|+|.+.||.--+
T Consensus 362 ~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVf 435 (440)
T KOG0302|consen 362 VIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVF 435 (440)
T ss_pred eEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeEE
Confidence 78889999999999995210 00 112224 34678899998655 8999999996433
No 135
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=8.2e-20 Score=169.01 Aligned_cols=147 Identities=17% Similarity=0.293 Sum_probs=120.9
Q ss_pred EEEEEecCCcEEEEeccCC--CCceeeeecCccCeEEEEEecCC-CceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCC
Q 017296 223 NVLAGYEDGSILVWDIRNP--GIPLTAMKVHLEPVLCLSIDESC-NGGISGGADQKIVLYNLDHSTGSCVIKKEINLERP 299 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~--~~~~~~~~~h~~~v~~~~~~~~~-~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~ 299 (374)
+|++++..|.|-+||+..+ ...++.+..|...++++.|+... ..+++||+||+||+||++......... ....
T Consensus 102 lIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~----~nSE 177 (839)
T KOG0269|consen 102 LIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFR----SNSE 177 (839)
T ss_pred hheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccccc----ccch
Confidence 5889999999999999752 23455788899999999997643 457899999999999998654433322 1334
Q ss_pred CeEEEEECCC-CCEEEEEeCCCeEEEEEccCCe-EEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCCC
Q 017296 300 GISGTSIRPD-SKIAATAGWDRRVRIYNYRKGS-ALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPPH 373 (374)
Q Consensus 300 ~v~~~~~sp~-~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~~ 373 (374)
.|+.+.|+|. +.+++++...|.+++||++... +...+.+|.++|.++.|+|++.+|||||.|++||||+++.+.
T Consensus 178 SiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~ 253 (839)
T KOG0269|consen 178 SIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSR 253 (839)
T ss_pred hhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCC
Confidence 6899999994 6678999999999999998764 445678999999999999999999999999999999998653
No 136
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.5e-18 Score=145.62 Aligned_cols=116 Identities=21% Similarity=0.364 Sum_probs=92.9
Q ss_pred cCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcc-
Q 017296 250 VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYR- 328 (374)
Q Consensus 250 ~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~- 328 (374)
.|.-++..+.+-....++++++.|..|.||++.++. ...++..+..-.-.++||+|++||+++.---|++|..-
T Consensus 185 kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~-----L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f 259 (420)
T KOG2096|consen 185 KHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQL-----LQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIF 259 (420)
T ss_pred hcccceEEEeecCCceEEEEecCCCcEEEEecCCce-----eeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEe
Confidence 366677777777777788999999999999997431 12233233334557899999999999999999999873
Q ss_pred --CCe-----EEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 329 --KGS-----ALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 329 --~~~-----~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
+|+ ....|++|...|.+++|+|+.+.++|.|.||++||||.+
T Consensus 260 ~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 260 TKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred ccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence 332 345789999999999999999999999999999999975
No 137
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=6.2e-17 Score=135.77 Aligned_cols=296 Identities=16% Similarity=0.185 Sum_probs=184.8
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
++..+|.. .. ..|+.|++-|.+|++|..||.|.+||+.+...-..+.+|. +.+.+++|+. +++.|+|+|.|-.+
T Consensus 16 el~~tld~-~~-a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~--~pi~sl~WS~--dgr~LltsS~D~si 89 (405)
T KOG1273|consen 16 ELTHTLDN-PL-AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHV--RPITSLCWSR--DGRKLLTSSRDWSI 89 (405)
T ss_pred hhceeccC-Cc-cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccc--cceeEEEecC--CCCEeeeecCCcee
Confidence 34444442 22 7899999999999999999999999998876555666665 4588999987 78999999999999
Q ss_pred EEEecCCCCCCCCCceeeeecc-eeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEc
Q 017296 89 KCWDIENGGLSSNPSLTIKTNS-YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (374)
++||+..|.+.. .++-.+ ...+....-+ ....++.
T Consensus 90 ~lwDl~~gs~l~----rirf~spv~~~q~hp~k----------------------------------------~n~~va~ 125 (405)
T KOG1273|consen 90 KLWDLLKGSPLK----RIRFDSPVWGAQWHPRK----------------------------------------RNKCVAT 125 (405)
T ss_pred EEEeccCCCcee----EEEccCccceeeecccc----------------------------------------CCeEEEE
Confidence 999999885321 222111 1111111000 0000000
Q ss_pred ccC-CCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCcee
Q 017296 168 GEQ-LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (374)
Q Consensus 168 ~~~-d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~ 246 (374)
-.. .-.+..++-....++..-.. .....+.. ...| + .-..++++|...|-+.++|..+. ..+.
T Consensus 126 ~~~~sp~vi~~s~~~h~~Lp~d~d----~dln~sas-------~~~f--d--r~g~yIitGtsKGkllv~~a~t~-e~va 189 (405)
T KOG1273|consen 126 IMEESPVVIDFSDPKHSVLPKDDD----GDLNSSAS-------HGVF--D--RRGKYIITGTSKGKLLVYDAETL-ECVA 189 (405)
T ss_pred EecCCcEEEEecCCceeeccCCCc----cccccccc-------cccc--c--CCCCEEEEecCcceEEEEecchh-eeee
Confidence 000 00111111000000000000 00000000 0001 1 11236899999999999998764 3455
Q ss_pred eeecCc-cCeEEEEEecCCCceEEEecCCeEEEEEcCCC--CCe-EEEEEeeec----CCCCeEEEEECCCCCEEEEEeC
Q 017296 247 AMKVHL-EPVLCLSIDESCNGGISGGADQKIVLYNLDHS--TGS-CVIKKEINL----ERPGISGTSIRPDSKIAATAGW 318 (374)
Q Consensus 247 ~~~~h~-~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~--~~~-~~~~~~~~~----~~~~v~~~~~sp~~~~l~s~~~ 318 (374)
.++.-. ..|..+.+...+..++..+.|..||.|++..- .++ .....+.+. .+-.=.+++||.+|.|+..|+.
T Consensus 190 s~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~ 269 (405)
T KOG1273|consen 190 SFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSA 269 (405)
T ss_pred eeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccc
Confidence 554444 68888999888999999999999999998521 000 000000000 0001236899999999876664
Q ss_pred -CCeEEEEEccCCeEEEEecccC-CceEEEEEeCCCCEEEEEeCCCcEEEecCCC
Q 017296 319 -DRRVRIYNYRKGSALAILKYHH-ATCNAVSFSSDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 319 -dg~v~iwd~~~~~~~~~~~~h~-~~v~~v~~sp~~~~las~s~D~~v~~W~~~~ 371 (374)
-..+.||....|..++.|.|.+ +....|.|+|-...|++- +.|+|++|....
T Consensus 270 ~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 270 RAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred cceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeec
Confidence 4679999999999999998887 677889999998899987 689999998643
No 138
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.80 E-value=8e-18 Score=148.79 Aligned_cols=269 Identities=16% Similarity=0.216 Sum_probs=175.9
Q ss_pred ecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeee
Q 017296 36 GTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCK 115 (374)
Q Consensus 36 ~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~ 115 (374)
+|...++++||.........+..|...+++.++.|... ..-.+++-+.|+.+++|.-... ...-|.....+.....|
T Consensus 8 aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~-n~lvvas~~gdk~~~~~~K~g~-~~~Vp~~~k~~gd~~~C- 84 (673)
T KOG4378|consen 8 ASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRR-NFLVVASMAGDKVMRIKEKDGK-TPEVPRVRKLTGDNAFC- 84 (673)
T ss_pred eccCCceEEeecccccCccccccCCCCCcceeeecccc-ceEEEeecCCceeEEEecccCC-CCccceeeccccchHHH-
Confidence 34455799999865444344445666677888888753 1123456678999999986432 11111111101110111
Q ss_pred eeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCC
Q 017296 116 LSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGG 195 (374)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~ 195 (374)
.. ......+.++|+..+.|+|||++...+...+..+
T Consensus 85 --------------------v~--------------------~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh---- 120 (673)
T KOG4378|consen 85 --------------------VA--------------------CASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDH---- 120 (673)
T ss_pred --------------------Hh--------------------hhhcceeeeccCcCceeeehhhHHHHHhhhccCC----
Confidence 00 0011235677888899999999955444444322
Q ss_pred CCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecC-ccCeEEEEEecCCCce-EEEecC
Q 017296 196 SPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVH-LEPVLCLSIDESCNGG-ISGGAD 273 (374)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~-~s~s~D 273 (374)
.....++ .+. ..--++++++..|.|.|..+.+. ...++++.. ...|+-+.+++..+.+ .++|.+
T Consensus 121 ------~stvt~v---~YN----~~DeyiAsvs~gGdiiih~~~t~-~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~ 186 (673)
T KOG4378|consen 121 ------QSTVTYV---DYN----NTDEYIASVSDGGDIIIHGTKTK-QKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDK 186 (673)
T ss_pred ------cceeEEE---Eec----CCcceeEEeccCCcEEEEecccC-ccccceecCCCCeEEEeecccccceeeEeeccC
Confidence 1122221 121 11126899999999999998753 333444433 3456678887765544 578999
Q ss_pred CeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECC-CCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCC
Q 017296 274 QKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP-DSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDC 352 (374)
Q Consensus 274 ~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~ 352 (374)
|.|.|||+......+.. ...|......+||+| +..+|++-|.|++|.+||....+...++. -..+..+|+|+++|
T Consensus 187 G~VtlwDv~g~sp~~~~---~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G 262 (673)
T KOG4378|consen 187 GAVTLWDVQGMSPIFHA---SEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECG 262 (673)
T ss_pred CeEEEEeccCCCcccch---hhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCc
Confidence 99999999765544332 234666788999999 57788999999999999998766666664 34577899999999
Q ss_pred CEEEEEeCCCcEEEecC
Q 017296 353 KLMASASEDSTVALWEL 369 (374)
Q Consensus 353 ~~las~s~D~~v~~W~~ 369 (374)
.+|+.|+..|.|..||+
T Consensus 263 ~~L~aG~s~G~~i~YD~ 279 (673)
T KOG4378|consen 263 TYLCAGNSKGELIAYDM 279 (673)
T ss_pred eEEEeecCCceEEEEec
Confidence 99999999999999998
No 139
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=2.1e-17 Score=150.77 Aligned_cols=233 Identities=18% Similarity=0.290 Sum_probs=169.2
Q ss_pred EEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCC
Q 017296 23 DVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNP 102 (374)
Q Consensus 23 ~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~ 102 (374)
-+.|+ ..+.|+.|. +..|.+|+..+++.......+ ...+.++.+++ ++++|+.|-.+|+|.+||..+.+.....
T Consensus 182 lldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~--~~~vtSv~ws~--~G~~LavG~~~g~v~iwD~~~~k~~~~~ 255 (484)
T KOG0305|consen 182 LLDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFG--EELVTSVKWSP--DGSHLAVGTSDGTVQIWDVKEQKKTRTL 255 (484)
T ss_pred Hhhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecC--CCceEEEEECC--CCCEEEEeecCCeEEEEehhhccccccc
Confidence 45666 344566554 568999999988754333333 35688888887 6789999999999999998764321100
Q ss_pred ceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCC
Q 017296 103 SLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTA 182 (374)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~ 182 (374)
..+ + ..+ + ...-|+
T Consensus 256 -------~~~--------------------h--------------------------~~r-v--------g~laW~---- 269 (484)
T KOG0305|consen 256 -------RGS--------------------H--------------------------ASR-V--------GSLAWN---- 269 (484)
T ss_pred -------cCC--------------------c--------------------------Cce-e--------EEEecc----
Confidence 000 0 000 0 001110
Q ss_pred ceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEec
Q 017296 183 ERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDE 262 (374)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~ 262 (374)
...+.+|+.|+.|..+|++........+++|...|-.+.+++
T Consensus 270 --------------------------------------~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~ 311 (484)
T KOG0305|consen 270 --------------------------------------SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP 311 (484)
T ss_pred --------------------------------------CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC
Confidence 013677999999999999876544445889999999999999
Q ss_pred CCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECC-CCCEEEEEe--CCCeEEEEEccCCeEEEEeccc
Q 017296 263 SCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP-DSKIAATAG--WDRRVRIYNYRKGSALAILKYH 339 (374)
Q Consensus 263 ~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~--~dg~v~iwd~~~~~~~~~~~~h 339 (374)
++..+|+|+.|+.+.+||...... ...+..|...|.+++|+| +..+||+|+ .|++|++||..+++.+..+. -
T Consensus 312 d~~~lASGgnDN~~~Iwd~~~~~p----~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-t 386 (484)
T KOG0305|consen 312 DGNQLASGGNDNVVFIWDGLSPEP----KFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-T 386 (484)
T ss_pred CCCeeccCCCccceEeccCCCccc----cEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-c
Confidence 999999999999999999843322 233455777899999999 567888877 49999999999999988776 3
Q ss_pred CCceEEEEEeCCCCEEEEE--eCCCcEEEecCC
Q 017296 340 HATCNAVSFSSDCKLMASA--SEDSTVALWELY 370 (374)
Q Consensus 340 ~~~v~~v~~sp~~~~las~--s~D~~v~~W~~~ 370 (374)
...|.+|.|++..+.|+++ -.+..|.||++-
T Consensus 387 gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~p 419 (484)
T KOG0305|consen 387 GSQVCSLIWSKKYKELLSTHGYSENQITLWKYP 419 (484)
T ss_pred CCceeeEEEcCCCCEEEEecCCCCCcEEEEecc
Confidence 4689999999998877664 467789999873
No 140
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1e-16 Score=146.77 Aligned_cols=245 Identities=18% Similarity=0.256 Sum_probs=173.9
Q ss_pred CCceeEEEEeCCCCEEEEecCCCcEEEEeCccccee-eeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCC
Q 017296 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTV-SSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG 96 (374)
Q Consensus 18 ~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~ 96 (374)
.++|++|||+.+.+.|+.+=+||.|.+|++...-.. ..+.++. ...+-.++|+. +.+|.|.+.+|+|--||+.++
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~-drsIE~L~W~e---~~RLFS~g~sg~i~EwDl~~l 100 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPE-DRSIESLAWAE---GGRLFSSGLSGSITEWDLHTL 100 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCC-CCceeeEEEcc---CCeEEeecCCceEEEEecccC
Confidence 488999999999999999999999999999765332 2333332 23466778873 468999999999999999876
Q ss_pred CCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEE
Q 017296 97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEI 176 (374)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v 176 (374)
+... ... . ...-+
T Consensus 101 k~~~----~~d----------------------------------------------------------~-----~gg~I 113 (691)
T KOG2048|consen 101 KQKY----NID----------------------------------------------------------S-----NGGAI 113 (691)
T ss_pred ceeE----Eec----------------------------------------------------------C-----CCcce
Confidence 3210 000 0 01224
Q ss_pred EecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCce-eeeecCccCe
Q 017296 177 WDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL-TAMKVHLEPV 255 (374)
Q Consensus 177 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~-~~~~~h~~~v 255 (374)
|.+.-. + -...++.|++||.+..++........ ..+..-+..+
T Consensus 114 Wsiai~--------------------------------p----~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRv 157 (691)
T KOG2048|consen 114 WSIAIN--------------------------------P----ENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRV 157 (691)
T ss_pred eEEEeC--------------------------------C----ccceEEeecCCceEEEEecCCceEEEEeecccccceE
Confidence 533210 0 00136678889977777664322111 1233346889
Q ss_pred EEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEe---eec-CCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCe
Q 017296 256 LCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKE---INL-ERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGS 331 (374)
Q Consensus 256 ~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~---~~~-~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~ 331 (374)
.+++|++++..+++|+.||.|++||....+........ +.. ..--|+++.|-.++ .||||..-|+|.+||...+.
T Consensus 158 Lslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gT 236 (691)
T KOG2048|consen 158 LSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGT 236 (691)
T ss_pred EEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcc
Confidence 99999999988999999999999999765433311111 111 12236777776555 68999999999999999999
Q ss_pred EEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 332 ALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 332 ~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
.++.+..|.+.|.+++-.+++.++++++.|+.|.-+...
T Consensus 237 LiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~ 275 (691)
T KOG2048|consen 237 LIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLT 275 (691)
T ss_pred hhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEec
Confidence 999999999999999999999999999999999877654
No 141
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.78 E-value=7.6e-16 Score=136.68 Aligned_cols=280 Identities=17% Similarity=0.244 Sum_probs=176.7
Q ss_pred CeEEeecCC-CceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 10 PVAVLRGHR-ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 10 ~~~~l~gH~-~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
...+++++. +-|.|++|.++|. ++||..+|.|.||+..+-+.......|. .++.+++.-- + -.|+||+.|..|
T Consensus 237 ~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~--ggv~~L~~lr--~-GtllSGgKDRki 310 (626)
T KOG2106|consen 237 RQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHD--GGVFSLCMLR--D-GTLLSGGKDRKI 310 (626)
T ss_pred EeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecC--CceEEEEEec--C-ccEeecCccceE
Confidence 344566654 5689999998775 6899999999999986555444433454 4566666543 3 367889999999
Q ss_pred EEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc
Q 017296 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (374)
..||-...+... ..+ |.. ++ +-.++. ..++. ++.|
T Consensus 311 ~~Wd~~y~k~r~---~el---------------Pe~----~G---------~iRtv~------------e~~~d--i~vG 345 (626)
T KOG2106|consen 311 ILWDDNYRKLRE---TEL---------------PEQ----FG---------PIRTVA------------EGKGD--ILVG 345 (626)
T ss_pred Eecccccccccc---ccC---------------chh----cC---------CeeEEe------------cCCCc--EEEe
Confidence 999933221100 000 000 00 000000 01111 2223
Q ss_pred cCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeee
Q 017296 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~ 248 (374)
..-+.|..=.++.+..+.... +.. .+. .+.. .+....++++++|+.+++|+ . .++. --
T Consensus 346 TtrN~iL~Gt~~~~f~~~v~g---------h~d---elw----gla~--hps~~q~~T~gqdk~v~lW~-~--~k~~-wt 403 (626)
T KOG2106|consen 346 TTRNFILQGTLENGFTLTVQG---------HGD---ELW----GLAT--HPSKNQLLTCGQDKHVRLWN-D--HKLE-WT 403 (626)
T ss_pred eccceEEEeeecCCceEEEEe---------ccc---cee----eEEc--CCChhheeeccCcceEEEcc-C--Ccee-EE
Confidence 332334333333333222221 111 000 1111 11223589999999999999 2 2222 22
Q ss_pred ecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcc
Q 017296 249 KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYR 328 (374)
Q Consensus 249 ~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~ 328 (374)
+.-.++..|+.|+|.+ .++.|..-|.-.+.|.+... + ... +.....++.+.|+|+|.++|.|+.|+.|.||-+.
T Consensus 404 ~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~---l-v~~-~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs 477 (626)
T KOG2106|consen 404 KIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQD---L-VTI-HTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVS 477 (626)
T ss_pred EEecCceeEeeccCcc-eEEEeeccceEEEEecccce---e-EEE-EecCCceEEEEEcCCCCEEEEecCCCeEEEEEEC
Confidence 3357899999999999 88999999999999887531 1 111 2225679999999999999999999999999886
Q ss_pred CC-eEEEEec-ccCCceEEEEEeCCCCEEEEEeCCCcEEEec
Q 017296 329 KG-SALAILK-YHHATCNAVSFSSDCKLMASASEDSTVALWE 368 (374)
Q Consensus 329 ~~-~~~~~~~-~h~~~v~~v~~sp~~~~las~s~D~~v~~W~ 368 (374)
.. +.+.... .|..+|..+.||+|+++|.+-|-|--|-+|.
T Consensus 478 ~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 478 ANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred CCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence 54 4443332 2337999999999999999999999999993
No 142
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=2e-17 Score=138.63 Aligned_cols=207 Identities=20% Similarity=0.357 Sum_probs=147.3
Q ss_pred CCCeEEeecCCCceeEEEEeCCCC--EEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeecccc
Q 017296 8 PDPVAVLRGHRASVTDVCFHQTKP--ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (374)
Q Consensus 8 ~~~~~~l~gH~~~V~~l~~~~~~~--~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D 85 (374)
.+.+..+..|.+.|+++.|.++-. .|+||++||.|.+|+.....++.++..|... |.-++..| .+...+|.|.|
T Consensus 73 ~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~--Vt~lsiHP--S~KLALsVg~D 148 (362)
T KOG0294|consen 73 RKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQ--VTDLSIHP--SGKLALSVGGD 148 (362)
T ss_pred hhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccc--cceeEecC--CCceEEEEcCC
Confidence 456778889999999999998775 8999999999999999988888999888743 66677776 35678899999
Q ss_pred CeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEE
Q 017296 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA 165 (374)
Q Consensus 86 ~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (374)
+.+|+||+.+|+... + +. ++. .+. .+ .+.+.+ .+++
T Consensus 149 ~~lr~WNLV~Gr~a~----v--------~~---L~~-~at-----------------~v----------~w~~~G-d~F~ 184 (362)
T KOG0294|consen 149 QVLRTWNLVRGRVAF----V--------LN---LKN-KAT-----------------LV----------SWSPQG-DHFV 184 (362)
T ss_pred ceeeeehhhcCccce----e--------ec---cCC-cce-----------------ee----------EEcCCC-CEEE
Confidence 999999999885311 0 00 000 000 00 011122 3334
Q ss_pred EcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCce
Q 017296 166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL 245 (374)
Q Consensus 166 ~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~ 245 (374)
+.+. +.|-+|-+.+......+.. +-+.+|.. | .....+++|.+|+.|++||-.. ..+.
T Consensus 185 v~~~--~~i~i~q~d~A~v~~~i~~-----------~~r~l~~~---~-----l~~~~L~vG~d~~~i~~~D~ds-~~~~ 242 (362)
T KOG0294|consen 185 VSGR--NKIDIYQLDNASVFREIEN-----------PKRILCAT---F-----LDGSELLVGGDNEWISLKDTDS-DTPL 242 (362)
T ss_pred EEec--cEEEEEecccHhHhhhhhc-----------cccceeee---e-----cCCceEEEecCCceEEEeccCC-Cccc
Confidence 4443 4789998776554333321 11233322 1 1122588999999999999875 6778
Q ss_pred eeeecCccCeEEEEE--ecCCCceEEEecCCeEEEEEcCCC
Q 017296 246 TAMKVHLEPVLCLSI--DESCNGGISGGADQKIVLYNLDHS 284 (374)
Q Consensus 246 ~~~~~h~~~v~~~~~--~~~~~~~~s~s~D~~i~lwd~~~~ 284 (374)
..+.+|...|..+.+ ++.+.+++|+|.||.|++||++..
T Consensus 243 ~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 243 TEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 889999999999986 677788999999999999999754
No 143
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=1.3e-17 Score=145.55 Aligned_cols=144 Identities=22% Similarity=0.314 Sum_probs=117.5
Q ss_pred eEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecC-CCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCC
Q 017296 222 VNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDES-CNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPG 300 (374)
Q Consensus 222 ~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~ 300 (374)
..|++||.|.+|++||+.+ +++..++..|..+|.++.|++. ...+++||.|+++++.|++...... ...+. ...
T Consensus 257 nVLaSgsaD~TV~lWD~~~-g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~---~~wk~-~g~ 331 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDT-GKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSG---KEWKF-DGE 331 (463)
T ss_pred eeEEecCCCceEEEEEcCC-CCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccC---ceEEe-ccc
Confidence 3688999999999999986 5678888889999999999874 4567899999999999997432211 11111 235
Q ss_pred eEEEEECCCCC-EEEEEeCCCeEEEEEccCC-eEEEEecccCCceEEEEEeCCCC-EEEEEeCCCcEEEecCC
Q 017296 301 ISGTSIRPDSK-IAATAGWDRRVRIYNYRKG-SALAILKYHHATCNAVSFSSDCK-LMASASEDSTVALWELY 370 (374)
Q Consensus 301 v~~~~~sp~~~-~l~s~~~dg~v~iwd~~~~-~~~~~~~~h~~~v~~v~~sp~~~-~las~s~D~~v~~W~~~ 370 (374)
|-.++|.|... .++++..||+|+-+|.+.. +++.++++|.+.|.++.+++.-+ +|+|+|.|++|++|++.
T Consensus 332 VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~ 404 (463)
T KOG0270|consen 332 VEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFD 404 (463)
T ss_pred eEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeec
Confidence 77888888544 5778889999999999875 89999999999999999987655 89999999999999984
No 144
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.77 E-value=8.1e-18 Score=140.70 Aligned_cols=258 Identities=15% Similarity=0.201 Sum_probs=166.8
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
+.+++|-.|.++|++|.|+|...+|+||+.|++|+++|......-..++.....+.+.+++|.|+ +..++.|-.--++
T Consensus 163 PvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPs--GefllvgTdHp~~ 240 (430)
T KOG0640|consen 163 PVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPS--GEFLLVGTDHPTL 240 (430)
T ss_pred ceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCC--CceEEEecCCCce
Confidence 46788999999999999999999999999999999999864322222222234567899999884 5678888888899
Q ss_pred EEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc
Q 017296 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (374)
|++|+++-++.- +. .|... ..+... .+.. ... .-+-+++
T Consensus 241 rlYdv~T~Qcfv----------------sa--nPd~q---ht~ai~--------~V~Y----------s~t--~~lYvTa 279 (430)
T KOG0640|consen 241 RLYDVNTYQCFV----------------SA--NPDDQ---HTGAIT--------QVRY----------SST--GSLYVTA 279 (430)
T ss_pred eEEeccceeEee----------------ec--Ccccc---ccccee--------EEEe----------cCC--ccEEEEe
Confidence 999998753310 00 00000 000000 0000 011 1245678
Q ss_pred cCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeee
Q 017296 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~ 248 (374)
+.||.|++||--+++|+.++... +.+..+|.++ |. .+..++++.+.|..+++|.+.+ +.++...
T Consensus 280 SkDG~IklwDGVS~rCv~t~~~A---------H~gsevcSa~--Ft----kn~kyiLsSG~DS~vkLWEi~t-~R~l~~Y 343 (430)
T KOG0640|consen 280 SKDGAIKLWDGVSNRCVRTIGNA---------HGGSEVCSAV--FT----KNGKYILSSGKDSTVKLWEIST-GRMLKEY 343 (430)
T ss_pred ccCCcEEeeccccHHHHHHHHhh---------cCCceeeeEE--Ec----cCCeEEeecCCcceeeeeeecC-CceEEEE
Confidence 88999999998888887776532 2233445443 32 2334789999999999999976 3445555
Q ss_pred ecCc-----cCeEEEEEecCCCceEE-EecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeE
Q 017296 249 KVHL-----EPVLCLSIDESCNGGIS-GGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRV 322 (374)
Q Consensus 249 ~~h~-----~~v~~~~~~~~~~~~~s-~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v 322 (374)
.|.. .--+...|+....+++. --..+.+.-||.+......++ .-.|...++.+.-||.+..+.+++.|..+
T Consensus 344 tGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~---slgHn~a~R~i~HSP~~p~FmTcsdD~ra 420 (430)
T KOG0640|consen 344 TGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALL---SLGHNGAVRWIVHSPVEPAFMTCSDDFRA 420 (430)
T ss_pred ecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhc---ccCCCCCceEEEeCCCCCceeeeccccee
Confidence 4431 00111223333333332 223567888988654332222 12467789999999999999999999999
Q ss_pred EEEEcc
Q 017296 323 RIYNYR 328 (374)
Q Consensus 323 ~iwd~~ 328 (374)
|+|-.+
T Consensus 421 RFWyrr 426 (430)
T KOG0640|consen 421 RFWYRR 426 (430)
T ss_pred eeeeec
Confidence 999653
No 145
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.76 E-value=1.7e-16 Score=153.85 Aligned_cols=309 Identities=16% Similarity=0.293 Sum_probs=181.3
Q ss_pred CCeEEeecCCCceeEEEEeCC-CCEEEEecCCCcEEEEeCccc--c--eeeeee-eeeceeeeEEeccCCccccceeeec
Q 017296 9 DPVAVLRGHRASVTDVCFHQT-KPILFAGTTGGELRIWDTVQH--R--TVSSSW-VHSAAHGIVSVATGPSIGLNKVISQ 82 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~-~~~l~s~s~D~~v~vWd~~~~--~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~ 82 (374)
..++.|..|+..|..++.+++ +.+++|||.||+||+||+..- . ...... -+.....+.++.++. .++++|.+
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~--~~~~~Av~ 1116 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG--NGDQFAVS 1116 (1431)
T ss_pred eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc--CCCeEEEE
Confidence 478899999999999999865 499999999999999997431 1 111111 121234566666665 45789999
Q ss_pred cccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCc
Q 017296 83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPK 162 (374)
Q Consensus 83 ~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (374)
+.||.|++.+++-.... . .. ........ ....+.++.+. .+....+-
T Consensus 1117 t~DG~v~~~~id~~~~~---~----~~---~~~~ri~n----------------~~~~g~vv~m~-------a~~~~~~S 1163 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVS---K----RV---ATQVRIPN----------------LKKDGVVVSMH-------AFTAIVQS 1163 (1431)
T ss_pred cCCCeEEEEEccccccc---c----ce---eeeeeccc----------------ccCCCceEEee-------cccccccc
Confidence 99999999999752110 0 00 00000000 00000011110 01111112
Q ss_pred eEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCC
Q 017296 163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 242 (374)
Q Consensus 163 ~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~ 242 (374)
.+++.+...+.|..||++....+..+... .+ .+++.+ +..+ .+...+++|+..|.+.+||+|-.
T Consensus 1164 ~~lvy~T~~~~iv~~D~r~~~~~w~lk~~---------~~-hG~vTS---i~id--p~~~WlviGts~G~l~lWDLRF~- 1227 (1431)
T KOG1240|consen 1164 HVLVYATDLSRIVSWDTRMRHDAWRLKNQ---------LR-HGLVTS---IVID--PWCNWLVIGTSRGQLVLWDLRFR- 1227 (1431)
T ss_pred eeEEEEEeccceEEecchhhhhHHhhhcC---------cc-ccceeE---EEec--CCceEEEEecCCceEEEEEeecC-
Confidence 34556666788999999876544333211 11 111111 1112 22237999999999999999863
Q ss_pred Cceeee-ecCccCeEEEEEecCCC---ceE-EEe-cCCeEEEEEcCCCCCeEEEEEe-----ee----cC----CCC--e
Q 017296 243 IPLTAM-KVHLEPVLCLSIDESCN---GGI-SGG-ADQKIVLYNLDHSTGSCVIKKE-----IN----LE----RPG--I 301 (374)
Q Consensus 243 ~~~~~~-~~h~~~v~~~~~~~~~~---~~~-s~s-~D~~i~lwd~~~~~~~~~~~~~-----~~----~~----~~~--v 301 (374)
.++... ..+..+++.+..++-.. ..+ +++ ..+.+.+|+++.+.++..+... +. .. ... .
T Consensus 1228 ~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~ 1307 (1431)
T KOG1240|consen 1228 VPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAG 1307 (1431)
T ss_pred ceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccc
Confidence 333332 34557888888865433 223 333 5789999999877665554322 00 00 000 1
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEccCCeE------------------------------------------------E
Q 017296 302 SGTSIRPDSKIAATAGWDRRVRIYNYRKGSA------------------------------------------------L 333 (374)
Q Consensus 302 ~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~------------------------------------------------~ 333 (374)
...++..-+..+.+|+.|..||.||...++. .
T Consensus 1308 ~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~ 1387 (1431)
T KOG1240|consen 1308 ISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALREN 1387 (1431)
T ss_pred eeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccc
Confidence 1223333455789999999999999864211 0
Q ss_pred EEe--------cccCCceEEEEEeCC-CCEEEEEeCCCcEEEec
Q 017296 334 AIL--------KYHHATCNAVSFSSD-CKLMASASEDSTVALWE 368 (374)
Q Consensus 334 ~~~--------~~h~~~v~~v~~sp~-~~~las~s~D~~v~~W~ 368 (374)
+.+ ..|...|.++++... ..+|++++.||.|+||.
T Consensus 1388 ~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1388 QKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred cccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 001 235567888887644 35999999999999995
No 146
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.76 E-value=1.6e-15 Score=142.06 Aligned_cols=299 Identities=16% Similarity=0.234 Sum_probs=202.5
Q ss_pred CeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccc-eeee-eeeeeceee-eEEeccCCccccceeeeccccC
Q 017296 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-TVSS-SWVHSAAHG-IVSVATGPSIGLNKVISQGRDG 86 (374)
Q Consensus 10 ~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~-~~~~-~~~~~~~~~-~~~~~~~~~~~~~~l~s~~~D~ 86 (374)
-..++.+|.+.|.-+. +-|..++++..++.+.||+..+++ ++.. +..-...+. +.++. .|+-=-|.++.|+++|
T Consensus 106 i~~~~~~~~a~v~~l~--~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G 182 (910)
T KOG1539|consen 106 IRHTTLLHGAKVHLLL--PFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQG 182 (910)
T ss_pred EEEEeccccceEEEEe--eecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCC
Confidence 3456677777776443 468889999999999999987642 2110 111111122 33332 2221236789999999
Q ss_pred eEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEE
Q 017296 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (374)
Q Consensus 87 ~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (374)
.+.+|++++++... +...+...+. ..+. .---.+++
T Consensus 183 ~lql~Nvrt~K~v~-------~f~~~~s~IT-------------------~ieq------------------sPaLDVVa 218 (910)
T KOG1539|consen 183 RLQLWNVRTGKVVY-------TFQEFFSRIT-------------------AIEQ------------------SPALDVVA 218 (910)
T ss_pred cEEEEEeccCcEEE-------Eeccccccee-------------------Eecc------------------CCcceEEE
Confidence 99999999986421 1110000000 0000 00012577
Q ss_pred cccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCcee
Q 017296 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (374)
Q Consensus 167 ~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~ 246 (374)
.|-.+|+|.+++++.++.+..+.+. .++.. . ..|.+ +|.+.+++|...|.+.+|||+.......
T Consensus 219 iG~~~G~ViifNlK~dkil~sFk~d----------~g~Vt--s-lSFrt---DG~p~las~~~~G~m~~wDLe~kkl~~v 282 (910)
T KOG1539|consen 219 IGLENGTVIIFNLKFDKILMSFKQD----------WGRVT--S-LSFRT---DGNPLLASGRSNGDMAFWDLEKKKLINV 282 (910)
T ss_pred EeccCceEEEEEcccCcEEEEEEcc----------cccee--E-EEecc---CCCeeEEeccCCceEEEEEcCCCeeeee
Confidence 8888999999999999998888652 11111 1 12433 4556788999999999999986443333
Q ss_pred eeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCC-------------------------eEEEE----------
Q 017296 247 AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTG-------------------------SCVIK---------- 291 (374)
Q Consensus 247 ~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~-------------------------~~~~~---------- 291 (374)
....|.+.+....|.+....+++++.|+..++|=++...+ ...+.
T Consensus 283 ~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~f 362 (910)
T KOG1539|consen 283 TRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSF 362 (910)
T ss_pred eeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhh
Confidence 4457888999999988888899999999999987762111 00000
Q ss_pred --------------------------------------------------------------Ee----------------
Q 017296 292 --------------------------------------------------------------KE---------------- 293 (374)
Q Consensus 292 --------------------------------------------------------------~~---------------- 293 (374)
..
T Consensus 363 s~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~ 442 (910)
T KOG1539|consen 363 SVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPK 442 (910)
T ss_pred hhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCc
Confidence 00
Q ss_pred -eecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEe---cccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 294 -INLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAIL---KYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 294 -~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~---~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
.+.....+++++.++.|.+.+.|...|+|-+|++++|-..+.+ +.|.++|..++...-++.++|++.||.+++|++
T Consensus 443 ~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f 522 (910)
T KOG1539|consen 443 RFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDF 522 (910)
T ss_pred cccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEec
Confidence 0001123678999999999999999999999999999777766 589999999999888889999999999999998
Q ss_pred CC
Q 017296 370 YP 371 (374)
Q Consensus 370 ~~ 371 (374)
..
T Consensus 523 ~~ 524 (910)
T KOG1539|consen 523 KK 524 (910)
T ss_pred CC
Confidence 53
No 147
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=1.4e-16 Score=133.36 Aligned_cols=238 Identities=22% Similarity=0.387 Sum_probs=154.2
Q ss_pred eeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCc
Q 017296 63 HGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE 142 (374)
Q Consensus 63 ~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (374)
..|..+.|++ ..+.|+.+++||++|++|+....+.. ..+.. . .++ .| .
T Consensus 14 d~IS~v~f~~--~~~~LLvssWDgslrlYdv~~~~l~~----~~~~~----~--plL--------------~c-~----- 61 (323)
T KOG1036|consen 14 DGISSVKFSP--SSSDLLVSSWDGSLRLYDVPANSLKL----KFKHG----A--PLL--------------DC-A----- 61 (323)
T ss_pred hceeeEEEcC--cCCcEEEEeccCcEEEEeccchhhhh----heecC----C--cee--------------ee-e-----
Confidence 4577788885 34677788899999999998753210 00000 0 000 00 0
Q ss_pred eeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCce
Q 017296 143 TVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFV 222 (374)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (374)
+.+ ..-+++|+-|+.|+.+|+.+++...-.. +.....|+. +.. ...
T Consensus 62 -------------F~d---~~~~~~G~~dg~vr~~Dln~~~~~~igt-----------h~~~i~ci~---~~~----~~~ 107 (323)
T KOG1036|consen 62 -------------FAD---ESTIVTGGLDGQVRRYDLNTGNEDQIGT-----------HDEGIRCIE---YSY----EVG 107 (323)
T ss_pred -------------ccC---CceEEEeccCceEEEEEecCCcceeecc-----------CCCceEEEE---eec----cCC
Confidence 001 1135678889999999999886432211 111222322 111 122
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeE
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGIS 302 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~ 302 (374)
.+++|+.|++|++||.+.. .....+. -...|.|+.... ..|+.|..|..+.+||++....... +.+ ..-...++
T Consensus 108 ~vIsgsWD~~ik~wD~R~~-~~~~~~d-~~kkVy~~~v~g--~~LvVg~~~r~v~iyDLRn~~~~~q-~re-S~lkyqtR 181 (323)
T KOG1036|consen 108 CVISGSWDKTIKFWDPRNK-VVVGTFD-QGKKVYCMDVSG--NRLVVGTSDRKVLIYDLRNLDEPFQ-RRE-SSLKYQTR 181 (323)
T ss_pred eEEEcccCccEEEEecccc-ccccccc-cCceEEEEeccC--CEEEEeecCceEEEEEcccccchhh-hcc-ccceeEEE
Confidence 5899999999999999852 2222221 234788888765 4578999999999999975322111 111 11123488
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEccCC----eEEEEecccCC---------ceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 303 GTSIRPDSKIAATAGWDRRVRIYNYRKG----SALAILKYHHA---------TCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 303 ~~~~sp~~~~l~s~~~dg~v~iwd~~~~----~~~~~~~~h~~---------~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
++++-|++.-.++++-||+|.+=.+++. +.-..++.|.. +|++++|+|-...||||+.||.|.+||+
T Consensus 182 ~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~ 261 (323)
T KOG1036|consen 182 CVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDL 261 (323)
T ss_pred EEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccC
Confidence 9999998777888999999988655544 23345666753 6999999999999999999999999999
Q ss_pred CCC
Q 017296 370 YPP 372 (374)
Q Consensus 370 ~~~ 372 (374)
++.
T Consensus 262 ~~r 264 (323)
T KOG1036|consen 262 FNR 264 (323)
T ss_pred cch
Confidence 753
No 148
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1e-16 Score=138.05 Aligned_cols=300 Identities=19% Similarity=0.201 Sum_probs=187.8
Q ss_pred CeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCccc------ceeeeeeeeeceeeeEEeccCCccccceeeecc
Q 017296 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQH------RTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG 83 (374)
Q Consensus 10 ~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 83 (374)
...-+.+|.+-|++|.|+..+.+|+||+.|..++||+.... +++. +.+|.+...+.+++|.. ....+.||+
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~-~~~~~H~SNIF~L~F~~--~N~~~~SG~ 124 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIG-VMEHPHRSNIFSLEFDL--ENRFLYSGE 124 (609)
T ss_pred hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCce-eccCccccceEEEEEcc--CCeeEecCC
Confidence 34457899999999999999999999999999999997532 3332 23343334688888876 445788999
Q ss_pred ccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCce
Q 017296 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY 163 (374)
Q Consensus 84 ~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (374)
.+++|.+-|+++.+.+. +...... ...++.. +..+. .-
T Consensus 125 ~~~~VI~HDiEt~qsi~----V~~~~~~--------------------~~~VY~m----------------~~~P~--DN 162 (609)
T KOG4227|consen 125 RWGTVIKHDIETKQSIY----VANENNN--------------------RGDVYHM----------------DQHPT--DN 162 (609)
T ss_pred CcceeEeeecccceeee----eecccCc--------------------ccceeec----------------ccCCC--Cc
Confidence 99999999998743211 0000000 0000000 00111 12
Q ss_pred EEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCC
Q 017296 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243 (374)
Q Consensus 164 ~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~ 243 (374)
++++.+.++.|.+||.+..+.-..+.-. ..+ +... ....|.|.. ..++++++..+.+-+||++.+..
T Consensus 163 ~~~~~t~~~~V~~~D~Rd~~~~~~~~~~------AN~--~~~F--~t~~F~P~~---P~Li~~~~~~~G~~~~D~R~~~~ 229 (609)
T KOG4227|consen 163 TLIVVTRAKLVSFIDNRDRQNPISLVLP------ANS--GKNF--YTAEFHPET---PALILVNSETGGPNVFDRRMQAR 229 (609)
T ss_pred eEEEEecCceEEEEeccCCCCCCceeee------cCC--Cccc--eeeeecCCC---ceeEEeccccCCCCceeeccccc
Confidence 4556677899999999876521111100 000 0111 112344432 23678899999999999988654
Q ss_pred ceeeeecC------ccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeec----CCCCeEEEEECCCCCEE
Q 017296 244 PLTAMKVH------LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINL----ERPGISGTSIRPDSKIA 313 (374)
Q Consensus 244 ~~~~~~~h------~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~----~~~~v~~~~~sp~~~~l 313 (374)
++....+. ...-..+.|++.++++++--...--.+||+-.+. -.+++...+. ....+.+++|-.|- .+
T Consensus 230 ~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R-~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v 307 (609)
T KOG4227|consen 230 PVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQR-CFVLKSDHNPNGYCNIKTIKSMTFIDDY-TV 307 (609)
T ss_pred hHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeeccc-ceeEeccCCCCcceeeeeeeeeeeecce-ee
Confidence 43322111 1122456678888887765555555667764321 1122211110 01135567787554 48
Q ss_pred EEEeCCCeEEEEEccCC-----------------------eEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 314 ATAGWDRRVRIYNYRKG-----------------------SALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 314 ~s~~~dg~v~iwd~~~~-----------------------~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
++|+.+=.|.+|.+-.. +.+-+|++|..-++.|.|+|-..+|+|.+-.+.+|||.-
T Consensus 308 ~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 308 ATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred eccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence 99999999999977321 124578999999999999999999999999999999964
No 149
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.75 E-value=3.7e-16 Score=142.17 Aligned_cols=143 Identities=18% Similarity=0.258 Sum_probs=114.4
Q ss_pred EecCCcEEEEeccCCCCce-eeee--cCccCeEEEEEec-CCCceEEEecCCeEEEEEcCCCCC---eEEEEEeeecCCC
Q 017296 227 GYEDGSILVWDIRNPGIPL-TAMK--VHLEPVLCLSIDE-SCNGGISGGADQKIVLYNLDHSTG---SCVIKKEINLERP 299 (374)
Q Consensus 227 gs~dg~i~iwdl~~~~~~~-~~~~--~h~~~v~~~~~~~-~~~~~~s~s~D~~i~lwd~~~~~~---~~~~~~~~~~~~~ 299 (374)
.+..|.|.||+++.++..- ..+. .....|+.+.++| +...++.++.||.|+||-+..... .......+..|..
T Consensus 599 ~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~e 678 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGE 678 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccc
Confidence 4557899999998775321 1111 1345788888877 445689999999999999864322 1223345677888
Q ss_pred CeEEEEECCC-CCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 300 GISGTSIRPD-SKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 300 ~v~~~~~sp~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
.|+++.|+|- ...|++++.|-+|++||+.+++....+.+|...|..+||||||+.+||.+.||+|++++-
T Consensus 679 KI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~P 749 (1012)
T KOG1445|consen 679 KITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEP 749 (1012)
T ss_pred eEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCC
Confidence 8999999994 446889999999999999999988899999999999999999999999999999999864
No 150
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.2e-16 Score=143.14 Aligned_cols=86 Identities=26% Similarity=0.356 Sum_probs=72.9
Q ss_pred CCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeee-eeeceeeeEEeccCCccccceeeeccccC
Q 017296 8 PDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW-VHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (374)
Q Consensus 8 ~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ 86 (374)
..+.+.|.||++-|+||+|+.+|.+|+|||+|..+.|||...-+.++.+. +|. ..|.++-|-|.-..++++||+.|.
T Consensus 40 L~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHt--aNIFsvKFvP~tnnriv~sgAgDk 117 (758)
T KOG1310|consen 40 LDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHT--ANIFSVKFVPYTNNRIVLSGAGDK 117 (758)
T ss_pred cchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccc--cceeEEeeeccCCCeEEEeccCcc
Confidence 34667899999999999999999999999999999999998766665433 454 468888888876667899999999
Q ss_pred eEEEEecCC
Q 017296 87 TVKCWDIEN 95 (374)
Q Consensus 87 ~vrvwd~~~ 95 (374)
.|+++|+..
T Consensus 118 ~i~lfdl~~ 126 (758)
T KOG1310|consen 118 LIKLFDLDS 126 (758)
T ss_pred eEEEEeccc
Confidence 999999974
No 151
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=4.1e-15 Score=136.41 Aligned_cols=256 Identities=18% Similarity=0.277 Sum_probs=168.8
Q ss_pred CeEEeecCC-CceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 10 PVAVLRGHR-ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 10 ~~~~l~gH~-~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
+..++.||+ +.|..|+|. ++..|+|.+.+|+|.-||+.+++....... .+..+=+++.++ ....++.|+.||.+
T Consensus 60 ~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~--~gg~IWsiai~p--~~~~l~IgcddGvl 134 (691)
T KOG2048|consen 60 LEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDS--NGGAIWSIAINP--ENTILAIGCDDGVL 134 (691)
T ss_pred eeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEecC--CCcceeEEEeCC--ccceEEeecCCceE
Confidence 455677765 789999998 678999999999999999999887665432 223355666665 34678889999977
Q ss_pred EEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc
Q 017296 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (374)
..+++..+..... . .+..+ ...+... .+ .....-+++|
T Consensus 135 ~~~s~~p~~I~~~------r------~l~rq--------------------~sRvLsl--------sw--~~~~~~i~~G 172 (691)
T KOG2048|consen 135 YDFSIGPDKITYK------R------SLMRQ--------------------KSRVLSL--------SW--NPTGTKIAGG 172 (691)
T ss_pred EEEecCCceEEEE------e------ecccc--------------------cceEEEE--------Ee--cCCccEEEec
Confidence 7777765432110 0 00000 0000000 00 1112336789
Q ss_pred cCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeee
Q 017296 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~ 248 (374)
+.|+.|++||+.++.-+--..... .+........+.++. +..+ + .+++|..-|+|++||-.. +..++.+
T Consensus 173 s~Dg~Iriwd~~~~~t~~~~~~~~----d~l~k~~~~iVWSv~-~Lrd---~--tI~sgDS~G~V~FWd~~~-gTLiqS~ 241 (691)
T KOG2048|consen 173 SIDGVIRIWDVKSGQTLHIITMQL----DRLSKREPTIVWSVL-FLRD---S--TIASGDSAGTVTFWDSIF-GTLIQSH 241 (691)
T ss_pred ccCceEEEEEcCCCceEEEeeecc----cccccCCceEEEEEE-Eeec---C--cEEEecCCceEEEEcccC-cchhhhh
Confidence 999999999999886433111100 011111122333332 2222 2 488999999999999875 5567778
Q ss_pred ecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 017296 249 KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIY 325 (374)
Q Consensus 249 ~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iw 325 (374)
..|...|.|++..+++..+.+++.|+.|..+...+....+........|...+++++..++ .+++||.|+++.+-
T Consensus 242 ~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~ 316 (691)
T KOG2048|consen 242 SCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAIC 316 (691)
T ss_pred hhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEc
Confidence 8899999999999998999999999999999887654334433444566677888888877 67888888877664
No 152
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=2.6e-17 Score=158.88 Aligned_cols=249 Identities=19% Similarity=0.341 Sum_probs=170.6
Q ss_pred ceeEEEEeCCCCE----EEEecCCCcEEEEeCcc---cc---eeeeeeeeeceeeeEEeccCCccccceeeeccccCeEE
Q 017296 20 SVTDVCFHQTKPI----LFAGTTGGELRIWDTVQ---HR---TVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVK 89 (374)
Q Consensus 20 ~V~~l~~~~~~~~----l~s~s~D~~v~vWd~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vr 89 (374)
.-++|+|.+.|.. ++.|.+||.|.+||... +. .+.+...|. ..|..+.|.+. .++.|+||+.||.|.
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~--G~V~gLDfN~~-q~nlLASGa~~geI~ 142 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHT--GPVLGLDFNPF-QGNLLASGADDGEIL 142 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccC--Cceeeeecccc-CCceeeccCCCCcEE
Confidence 4478999887654 89999999999999754 22 233344454 34777888774 457999999999999
Q ss_pred EEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEccc
Q 017296 90 CWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGE 169 (374)
Q Consensus 90 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (374)
+||++.-+....+. .....+...+ ..++. .-.-++++++
T Consensus 143 iWDlnn~~tP~~~~----------------------~~~~~~eI~~--lsWNr-----------------kvqhILAS~s 181 (1049)
T KOG0307|consen 143 IWDLNKPETPFTPG----------------------SQAPPSEIKC--LSWNR-----------------KVSHILASGS 181 (1049)
T ss_pred EeccCCcCCCCCCC----------------------CCCCcccceE--eccch-----------------hhhHHhhccC
Confidence 99998642211000 0000000001 11110 0012567788
Q ss_pred CCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecC---CcEEEEeccCCCCcee
Q 017296 170 QLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYED---GSILVWDIRNPGIPLT 246 (374)
Q Consensus 170 ~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~d---g~i~iwdl~~~~~~~~ 246 (374)
.++.+.|||++..+.+..+... ..+.+|..+ ...|+ ....++++++| -.|.+||+|....+++
T Consensus 182 ~sg~~~iWDlr~~~pii~ls~~----------~~~~~~S~l-~WhP~---~aTql~~As~dd~~PviqlWDlR~assP~k 247 (1049)
T KOG0307|consen 182 PSGRAVIWDLRKKKPIIKLSDT----------PGRMHCSVL-AWHPD---HATQLLVASGDDSAPVIQLWDLRFASSPLK 247 (1049)
T ss_pred CCCCceeccccCCCcccccccC----------CCccceeee-eeCCC---CceeeeeecCCCCCceeEeecccccCCchh
Confidence 8889999999998776665421 122333333 34443 33457777766 4699999999888999
Q ss_pred eeecCccCeEEEEEecCC-CceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCC-CCEEEEEeCCCeEEE
Q 017296 247 AMKVHLEPVLCLSIDESC-NGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPD-SKIAATAGWDRRVRI 324 (374)
Q Consensus 247 ~~~~h~~~v~~~~~~~~~-~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~s~~~dg~v~i 324 (374)
.+++|...|.+|.+.+.. ..++|++.|++|.+|+.++++ . ..++.....++..+.|.|- ...|++++.||+|.|
T Consensus 248 ~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgE--v--l~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I 323 (1049)
T KOG0307|consen 248 ILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGE--V--LGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISI 323 (1049)
T ss_pred hhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCce--E--eeecCCCCcceeeeeecCCCcchhhhheeccceee
Confidence 999999999999997655 678999999999999987532 2 2334445578999999994 558999999999999
Q ss_pred EEccCC
Q 017296 325 YNYRKG 330 (374)
Q Consensus 325 wd~~~~ 330 (374)
+.+...
T Consensus 324 ~sl~~~ 329 (1049)
T KOG0307|consen 324 YSLQGT 329 (1049)
T ss_pred eeeecC
Confidence 998654
No 153
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.74 E-value=4.7e-16 Score=137.74 Aligned_cols=266 Identities=17% Similarity=0.231 Sum_probs=170.8
Q ss_pred CceeEEEEeCCCC-EEEEecCCCcEEEEeCcccceeeeee--eeeceeeeEEeccCCccccceeeeccccCeEEEEecCC
Q 017296 19 ASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSW--VHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIEN 95 (374)
Q Consensus 19 ~~V~~l~~~~~~~-~l~s~s~D~~v~vWd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~ 95 (374)
-.|..++|+.... .+++.+.|..|++|... |+. .+.+ ....+..-.|++... ...++++||..++|++||++.
T Consensus 35 pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~-g~~-~~Vp~~~k~~gd~~~Cv~~~s--~S~y~~sgG~~~~Vkiwdl~~ 110 (673)
T KOG4378|consen 35 PGDFSFNWQRRNFLVVASMAGDKVMRIKEKD-GKT-PEVPRVRKLTGDNAFCVACAS--QSLYEISGGQSGCVKIWDLRA 110 (673)
T ss_pred CcceeeeccccceEEEeecCCceeEEEeccc-CCC-CccceeeccccchHHHHhhhh--cceeeeccCcCceeeehhhHH
Confidence 3488999976553 34566788899999853 331 1111 011111112222211 225899999999999999984
Q ss_pred CCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEE
Q 017296 96 GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVE 175 (374)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 175 (374)
..+.. .++++... ..+...+ ....++++++..|.|.
T Consensus 111 kl~hr-----------------~lkdh~st-------vt~v~YN--------------------~~DeyiAsvs~gGdii 146 (673)
T KOG4378|consen 111 KLIHR-----------------FLKDHQST-------VTYVDYN--------------------NTDEYIASVSDGGDII 146 (673)
T ss_pred HHHhh-----------------hccCCcce-------eEEEEec--------------------CCcceeEEeccCCcEE
Confidence 31110 01111100 0011111 1123456677778899
Q ss_pred EEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCe
Q 017296 176 IWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPV 255 (374)
Q Consensus 176 vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v 255 (374)
|-.+.+++...++.... +..+ -...|.+.+ +-+|.+++.+|.|.+||.......+.....|..|.
T Consensus 147 ih~~~t~~~tt~f~~~s----------gqsv--Rll~ys~sk---r~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~ 211 (673)
T KOG4378|consen 147 IHGTKTKQKTTTFTIDS----------GQSV--RLLRYSPSK---RFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPC 211 (673)
T ss_pred EEecccCccccceecCC----------CCeE--EEeeccccc---ceeeEeeccCCeEEEEeccCCCcccchhhhccCCc
Confidence 99988887655553210 1111 122333322 22577899999999999965444555667899999
Q ss_pred EEEEEecC-CCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccC-CeEE
Q 017296 256 LCLSIDES-CNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRK-GSAL 333 (374)
Q Consensus 256 ~~~~~~~~-~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~-~~~~ 333 (374)
..++|+|. ...+++-+.|..|.+||...... ...+.+. .....++|+|+|.+|+.|...|.|..||++. ..++
T Consensus 212 ~gicfspsne~l~vsVG~Dkki~~yD~~s~~s----~~~l~y~-~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv 286 (673)
T KOG4378|consen 212 RGICFSPSNEALLVSVGYDKKINIYDIRSQAS----TDRLTYS-HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPV 286 (673)
T ss_pred CcceecCCccceEEEecccceEEEeecccccc----cceeeec-CCcceeeecCCceEEEeecCCceEEEEecccCCCCc
Confidence 99999874 45678999999999999864321 1222222 3588999999999999999999999999975 4578
Q ss_pred EEecccCCceEEEEEeCCC
Q 017296 334 AILKYHHATCNAVSFSSDC 352 (374)
Q Consensus 334 ~~~~~h~~~v~~v~~sp~~ 352 (374)
.++.+|...|.+|+|-|..
T Consensus 287 ~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 287 AVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred eEeeecccceeEEEeeecc
Confidence 8899999999999998764
No 154
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.74 E-value=6.8e-17 Score=143.17 Aligned_cols=239 Identities=17% Similarity=0.248 Sum_probs=166.0
Q ss_pred CCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCC
Q 017296 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGG 97 (374)
Q Consensus 18 ~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~ 97 (374)
..-|+.+.+.|||+.|++|++-.++-|||+....+-........+-.+.+++.++ |.+.++++..||.|+|||+.+..
T Consensus 465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp--DakvcFsccsdGnI~vwDLhnq~ 542 (705)
T KOG0639|consen 465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP--DAKVCFSCCSDGNIAVWDLHNQT 542 (705)
T ss_pred ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC--ccceeeeeccCCcEEEEEcccce
Confidence 4678899999999999999999999999987543211111111222344555554 77888899999999999997542
Q ss_pred CCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEE
Q 017296 98 LSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIW 177 (374)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vW 177 (374)
..+ ...+| .|+
T Consensus 543 ~Vr-------qfqGh---------------------------------------------------------tDG----- 553 (705)
T KOG0639|consen 543 LVR-------QFQGH---------------------------------------------------------TDG----- 553 (705)
T ss_pred eee-------cccCC---------------------------------------------------------CCC-----
Confidence 110 00000 000
Q ss_pred ecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEE
Q 017296 178 DLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLC 257 (374)
Q Consensus 178 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~ 257 (374)
..|+.+ +.....|-+|.-|++||-||+++... ++.. .....|.+
T Consensus 554 ---------------------------ascIdi-------s~dGtklWTGGlDntvRcWDlregrq-lqqh-dF~SQIfS 597 (705)
T KOG0639|consen 554 ---------------------------ASCIDI-------SKDGTKLWTGGLDNTVRCWDLREGRQ-LQQH-DFSSQIFS 597 (705)
T ss_pred ---------------------------ceeEEe-------cCCCceeecCCCccceeehhhhhhhh-hhhh-hhhhhhee
Confidence 001110 01112356777788889998886432 1111 13567888
Q ss_pred EEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEec
Q 017296 258 LSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILK 337 (374)
Q Consensus 258 ~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 337 (374)
+...|.+.+++.|=..+.+.+-...... +..+..|.+-|.++.|.+.|++++|.|.|..+-.|..--|..+...+
T Consensus 598 Lg~cP~~dWlavGMens~vevlh~skp~-----kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk 672 (705)
T KOG0639|consen 598 LGYCPTGDWLAVGMENSNVEVLHTSKPE-----KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK 672 (705)
T ss_pred cccCCCccceeeecccCcEEEEecCCcc-----ceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc
Confidence 8889999999999899988887664332 23345577889999999999999999999999999876666665544
Q ss_pred ccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 338 YHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 338 ~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
-...|.+..+|.|+++|+|||.|+.-.+|.+
T Consensus 673 -E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 673 -ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred -ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 3468999999999999999999988888765
No 155
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.73 E-value=1.3e-15 Score=128.41 Aligned_cols=286 Identities=16% Similarity=0.215 Sum_probs=177.9
Q ss_pred eEEEEeCCCCEEEEecCCCcEEEEeCcc-------cceee-e--eeee-eceeeeEEeccC-----Cccccceeeecccc
Q 017296 22 TDVCFHQTKPILFAGTTGGELRIWDTVQ-------HRTVS-S--SWVH-SAAHGIVSVATG-----PSIGLNKVISQGRD 85 (374)
Q Consensus 22 ~~l~~~~~~~~l~s~s~D~~v~vWd~~~-------~~~~~-~--~~~~-~~~~~~~~~~~~-----~~~~~~~l~s~~~D 85 (374)
..+.|+|||.-|++-++|..+.+|++.. ...+. . ...+ ..+..+..+++- ..++.+.+++.++|
T Consensus 53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~ 132 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD 132 (406)
T ss_pred ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence 4578999999999999999999999732 11110 0 0001 011224444432 23456788999999
Q ss_pred CeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEE
Q 017296 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA 165 (374)
Q Consensus 86 ~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (374)
.-|++||.-+|++... ++.. . +.... ....+. .+.+++.. +
T Consensus 133 ~PIh~wdaftG~lraS---------y~~y--d----h~de~----taAhsL------------------~Fs~DGeq--l 173 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLRAS---------YRAY--D----HQDEY----TAAHSL------------------QFSPDGEQ--L 173 (406)
T ss_pred Cceeeeeccccccccc---------hhhh--h----hHHhh----hhheeE------------------EecCCCCe--E
Confidence 9999999998864321 0000 0 00000 000000 12233332 2
Q ss_pred EcccCCCeEEEEec-CCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCc
Q 017296 166 VAGEQLSEVEIWDL-NTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 244 (374)
Q Consensus 166 ~~~~~d~~i~vWd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~ 244 (374)
.+| .++.|+++|+ +.|.-.....-. .....+..-+++...|.|.. ...++.|+-...+-||.-.. ..|
T Consensus 174 faG-ykrcirvFdt~RpGr~c~vy~t~------~~~k~gq~giisc~a~sP~~---~~~~a~gsY~q~~giy~~~~-~~p 242 (406)
T KOG2919|consen 174 FAG-YKRCIRVFDTSRPGRDCPVYTTV------TKGKFGQKGIISCFAFSPMD---SKTLAVGSYGQRVGIYNDDG-RRP 242 (406)
T ss_pred eec-ccceEEEeeccCCCCCCcchhhh------hcccccccceeeeeeccCCC---CcceeeecccceeeeEecCC-CCc
Confidence 334 4679999998 555421111000 00011122233333455432 23577888888888887654 467
Q ss_pred eeeeecCccCeEEEEEecCCCceEEEec-CCeEEEEEcCCCCCeEEEEEeeecCCC-CeEEEE--ECCCCCEEEEEeCCC
Q 017296 245 LTAMKVHLEPVLCLSIDESCNGGISGGA-DQKIVLYNLDHSTGSCVIKKEINLERP-GISGTS--IRPDSKIAATAGWDR 320 (374)
Q Consensus 245 ~~~~~~h~~~v~~~~~~~~~~~~~s~s~-D~~i~lwd~~~~~~~~~~~~~~~~~~~-~v~~~~--~sp~~~~l~s~~~dg 320 (374)
++.+-+|...|+.+.+.+++..+.+|+. |..|..||++.... .+ ..+..|.. .=..+. +.|++++|++|+.||
T Consensus 243 l~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~-pv--~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG 319 (406)
T KOG2919|consen 243 LQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD-PV--YALERHVGDTNQRILFDLDPKGEILASGDTDG 319 (406)
T ss_pred eeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccc-hh--hhhhhhccCccceEEEecCCCCceeeccCCCc
Confidence 8889999999999999999998888774 78999999974321 11 11111211 111233 468999999999999
Q ss_pred eEEEEEccC-CeEEEEecccCCceEEEEEeCCCCEEEEEeC
Q 017296 321 RVRIYNYRK-GSALAILKYHHATCNAVSFSSDCKLMASASE 360 (374)
Q Consensus 321 ~v~iwd~~~-~~~~~~~~~h~~~v~~v~~sp~~~~las~s~ 360 (374)
.|++||+++ ++....+..|...|+.++++|-=.++||+|.
T Consensus 320 ~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 320 SVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSG 360 (406)
T ss_pred cEEEEecCCCCCcccccccccccccceecCcccceeeeccC
Confidence 999999988 6767778889999999999998778888774
No 156
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.73 E-value=1.2e-13 Score=128.43 Aligned_cols=294 Identities=27% Similarity=0.474 Sum_probs=191.5
Q ss_pred EeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccc-eeeeeeeeeceeeeEEeccCCccccc-eeeeccc-cCeEE
Q 017296 13 VLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-TVSSSWVHSAAHGIVSVATGPSIGLN-KVISQGR-DGTVK 89 (374)
Q Consensus 13 ~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~-D~~vr 89 (374)
.+.+|...|..+.|.+.+..++.++.|+.+.+|+...+. .+..+..+.. ..+..+... ..++. .++..+. |+.++
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD-SSVSKLALS-SPDGNSILLASSSLDGTVK 137 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC-CceeeEEEE-CCCcceEEeccCCCCccEE
Confidence 677999999999999999999999999999999988775 4555444221 123444442 22344 4555444 99999
Q ss_pred EEecCC-CCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc
Q 017296 90 CWDIEN-GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (374)
Q Consensus 90 vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (374)
+||... ... ...+.........+ .+.+.+ .+++..+
T Consensus 138 ~~~~~~~~~~----~~~~~~~~~~v~~~--------------------------------------~~~~~~-~~~~~~~ 174 (466)
T COG2319 138 LWDLSTPGKL----IRTLEGHSESVTSL--------------------------------------AFSPDG-KLLASGS 174 (466)
T ss_pred EEEecCCCeE----EEEEecCcccEEEE--------------------------------------EECCCC-CEEEecC
Confidence 999975 211 00000000000000 011112 2333332
Q ss_pred cCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCcee-e
Q 017296 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT-A 247 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~-~ 247 (374)
..++.+++|++.++..+..+..+ .....++ .+.+ .+...+++++.|+.|++||... ..... .
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~----------~~~v~~~---~~~~---~~~~~~~~~~~d~~i~~wd~~~-~~~~~~~ 237 (466)
T COG2319 175 SLDGTIKLWDLRTGKPLSTLAGH----------TDPVSSL---AFSP---DGGLLIASGSSDGTIRLWDLST-GKLLRST 237 (466)
T ss_pred CCCCceEEEEcCCCceEEeeccC----------CCceEEE---EEcC---CcceEEEEecCCCcEEEEECCC-CcEEeee
Confidence 24899999999986655555431 1111111 2222 2222344459999999998873 33444 5
Q ss_pred eecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEc
Q 017296 248 MKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNY 327 (374)
Q Consensus 248 ~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~ 327 (374)
+.+|.... ...|.+.+..+++++.|+.+++|++..... .... ...|...+.++.|+|++..+++++.|+.+++||.
T Consensus 238 ~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~ 313 (466)
T COG2319 238 LSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS-LLRT--LSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDL 313 (466)
T ss_pred cCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc-EEEE--EecCCccEEEEEECCCCCEEEEeeCCCcEEEEEc
Confidence 77787775 337777777778999999999999975543 1111 1445677999999999888888999999999999
Q ss_pred cCCeEEEEec--ccCCceEEEEEeCCCCEEEEE-eCCCcEEEecCCCC
Q 017296 328 RKGSALAILK--YHHATCNAVSFSSDCKLMASA-SEDSTVALWELYPP 372 (374)
Q Consensus 328 ~~~~~~~~~~--~h~~~v~~v~~sp~~~~las~-s~D~~v~~W~~~~~ 372 (374)
.......... .|...+..+.|.+++..++.+ ..|+.+++|++...
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 361 (466)
T COG2319 314 ETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTG 361 (466)
T ss_pred CCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCC
Confidence 8877666655 788889999994343555555 78899999988643
No 157
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.72 E-value=1e-16 Score=154.03 Aligned_cols=151 Identities=24% Similarity=0.342 Sum_probs=127.4
Q ss_pred CceEEEEEe--cCCcEEEEeccCC-----------CCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCC---
Q 017296 220 GFVNVLAGY--EDGSILVWDIRNP-----------GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH--- 283 (374)
Q Consensus 220 ~~~~~~~gs--~dg~i~iwdl~~~-----------~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~--- 283 (374)
....+++|+ .||.++||+...- ...+.++..|...|+|+.|.+++.+||+||.|+.|.+|....
T Consensus 24 dg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~ 103 (942)
T KOG0973|consen 24 DGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGS 103 (942)
T ss_pred CceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCC
Confidence 344688888 8999999987421 112445667999999999999999999999999999999762
Q ss_pred -----CCC------eEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCC
Q 017296 284 -----STG------SCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDC 352 (374)
Q Consensus 284 -----~~~------~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~ 352 (374)
.++ .+.....+..|...|..++|+|++.++||++.|++|-+||..+++.++++++|...|-.+.|-|-|
T Consensus 104 ~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~G 183 (942)
T KOG0973|consen 104 GTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIG 183 (942)
T ss_pred cccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCcc
Confidence 000 111233456788889999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEecCC
Q 017296 353 KLMASASEDSTVALWELY 370 (374)
Q Consensus 353 ~~las~s~D~~v~~W~~~ 370 (374)
+||||=+.|++|++|+..
T Consensus 184 ky~ASqsdDrtikvwrt~ 201 (942)
T KOG0973|consen 184 KYFASQSDDRTLKVWRTS 201 (942)
T ss_pred CeeeeecCCceEEEEEcc
Confidence 999999999999999864
No 158
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.71 E-value=3.5e-16 Score=142.39 Aligned_cols=287 Identities=18% Similarity=0.232 Sum_probs=160.3
Q ss_pred EEeecCCCceeE--EEEeC---CCCEEEEecCCCcEEEEeCcccc------eeeeeeeeeceeeeEEeccCCccccceee
Q 017296 12 AVLRGHRASVTD--VCFHQ---TKPILFAGTTGGELRIWDTVQHR------TVSSSWVHSAAHGIVSVATGPSIGLNKVI 80 (374)
Q Consensus 12 ~~l~gH~~~V~~--l~~~~---~~~~l~s~s~D~~v~vWd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (374)
.-...|.-++.. ..|++ ..++|+-+.+||.|.++|...-. .+.....|.+ .|..+.+.+ ....|+
T Consensus 41 ~s~~~~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~n--AifDl~wap--ge~~lV 116 (720)
T KOG0321|consen 41 TSYANDGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKN--AIFDLKWAP--GESLLV 116 (720)
T ss_pred cccccCCCCCCCccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccc--eeEeeccCC--CceeEE
Confidence 333444445544 56654 35689999999999999975321 1233344543 367777776 567899
Q ss_pred eccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCC
Q 017296 81 SQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEG 160 (374)
Q Consensus 81 s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (374)
+++.|.++|+||++++++.... ...+|.+.+ . +. .+.+.+
T Consensus 117 sasGDsT~r~Wdvk~s~l~G~~-----~~~GH~~Sv----------------------------k--S~-----cf~~~n 156 (720)
T KOG0321|consen 117 SASGDSTIRPWDVKTSRLVGGR-----LNLGHTGSV----------------------------K--SE-----CFMPTN 156 (720)
T ss_pred EccCCceeeeeeeccceeecce-----eeccccccc----------------------------c--hh-----hhccCC
Confidence 9999999999999987543210 011111100 0 00 011222
Q ss_pred CceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccC
Q 017296 161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (374)
Q Consensus 161 ~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~ 240 (374)
..++++|+.|+.|.|||++..... .+.. + +.........- +..... + -..++=|-...
T Consensus 157 -~~vF~tGgRDg~illWD~R~n~~d-~~e~--------~---~~~~~~~~n~~-ptpskp---~-----~kr~~k~kA~s 214 (720)
T KOG0321|consen 157 -PAVFCTGGRDGEILLWDCRCNGVD-ALEE--------F---DNRIYGRHNTA-PTPSKP---L-----KKRIRKWKAAS 214 (720)
T ss_pred -CcceeeccCCCcEEEEEEeccchh-hHHH--------H---hhhhhccccCC-CCCCch---h-----hcccccccccc
Confidence 235778899999999998764310 0000 0 00000000000 000000 0 00111111110
Q ss_pred CCCceeeeecCccCeEEEEEecCCCceEEEec-CCeEEEEEcCCCCCeEEEE--E--eeecC---CCCeEEEEECCCCCE
Q 017296 241 PGIPLTAMKVHLEPVLCLSIDESCNGGISGGA-DQKIVLYNLDHSTGSCVIK--K--EINLE---RPGISGTSIRPDSKI 312 (374)
Q Consensus 241 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~-D~~i~lwd~~~~~~~~~~~--~--~~~~~---~~~v~~~~~sp~~~~ 312 (374)
. .-...|+.+.| .+...++++|. |+.||+||++......... . ....+ ..++.++...-.|.+
T Consensus 215 --~------ti~ssvTvv~f-kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~ 285 (720)
T KOG0321|consen 215 --N------TIFSSVTVVLF-KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTY 285 (720)
T ss_pred --C------ceeeeeEEEEE-eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCe
Confidence 0 01123555555 34456888887 9999999997543211110 0 01111 235667777777888
Q ss_pred EEEEeCCCeEEEEEccCC--eEEEEecccCCceEE--EEEeCCCCEEEEEeCCCcEEEecCCCCC
Q 017296 313 AATAGWDRRVRIYNYRKG--SALAILKYHHATCNA--VSFSSDCKLMASASEDSTVALWELYPPH 373 (374)
Q Consensus 313 l~s~~~dg~v~iwd~~~~--~~~~~~~~h~~~v~~--v~~sp~~~~las~s~D~~v~~W~~~~~~ 373 (374)
+.+.|.|++|.+||+..- .+...+.++...-.- -..+||+++|+||+.|....+|.+..|.
T Consensus 286 L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e 350 (720)
T KOG0321|consen 286 LFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPE 350 (720)
T ss_pred EEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCcc
Confidence 888888999999999753 233444444432111 2468999999999999999999987664
No 159
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.71 E-value=1.5e-16 Score=148.80 Aligned_cols=284 Identities=17% Similarity=0.276 Sum_probs=181.2
Q ss_pred eEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEE
Q 017296 11 VAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC 90 (374)
Q Consensus 11 ~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrv 90 (374)
+..|.||...|+|..|...|.+++||+.|..||||..++++++....+|.. .+..++.+. ....++++|.|..||+
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~--ditdlavs~--~n~~iaaaS~D~vIrv 258 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSG--DITDLAVSS--NNTMIAAASNDKVIRV 258 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCcc--ccchhccch--hhhhhhhcccCceEEE
Confidence 456789999999999999999999999999999999999999999988874 366555544 2235678999999999
Q ss_pred EecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccC
Q 017296 91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ 170 (374)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (374)
|.++.+.... .+.. | .+.++.. .+.+ ..+.+.
T Consensus 259 Wrl~~~~pvs----vLrg---h---------------------------tgavtai--------afsP------~~sss~ 290 (1113)
T KOG0644|consen 259 WRLPDGAPVS----VLRG---H---------------------------TGAVTAI--------AFSP------RASSSD 290 (1113)
T ss_pred EecCCCchHH----HHhc---c---------------------------ccceeee--------ccCc------cccCCC
Confidence 9999874321 0000 0 0000100 0111 125667
Q ss_pred CCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeec
Q 017296 171 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV 250 (374)
Q Consensus 171 d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~ 250 (374)
|+++++||.+ -......+.+. .+.. ..+....+ |. .....+++|+.|+.-+.|.+..- -+
T Consensus 291 dgt~~~wd~r-~~~~~y~prp~-----~~~~--~~~~~s~~-~~----~~~~~f~Tgs~d~ea~n~e~~~l-------~~ 350 (1113)
T KOG0644|consen 291 DGTCRIWDAR-LEPRIYVPRPL-----KFTE--KDLVDSIL-FE----NNGDRFLTGSRDGEARNHEFEQL-------AW 350 (1113)
T ss_pred CCceEecccc-ccccccCCCCC-----Cccc--ccceeeee-cc----ccccccccccCCcccccchhhHh-------hh
Confidence 8999999987 11111111111 1111 11111111 11 11224789999999998876421 12
Q ss_pred CccCeEEEEEecCC-CceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECC-CCCEEEEEeCCCeEEEEEcc
Q 017296 251 HLEPVLCLSIDESC-NGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP-DSKIAATAGWDRRVRIYNYR 328 (374)
Q Consensus 251 h~~~v~~~~~~~~~-~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~v~iwd~~ 328 (374)
+...+.-+....+. ...+++-.+..+++|++-.+...+. ...|.+.++.+.|+| |.++..+++.||..-|||+.
T Consensus 351 ~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~----l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~ 426 (1113)
T KOG0644|consen 351 RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHN----LMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIW 426 (1113)
T ss_pred hccceEEEeccccccccceeeeeeeEeeeeecccchhhhh----hcccccceeeeeecCCCcHhhhhccCCCceEeeecc
Confidence 22222222222111 2235666788899998854321221 234566788999999 56667799999999999999
Q ss_pred CCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 329 KGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 329 ~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
.|.+++.+.-....+..-+||+||..++-...-|.+.|....
T Consensus 427 eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~g 468 (1113)
T KOG0644|consen 427 EGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTG 468 (1113)
T ss_pred cCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccC
Confidence 888776554323355566999999988877777878776553
No 160
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.70 E-value=3.8e-15 Score=130.84 Aligned_cols=251 Identities=15% Similarity=0.230 Sum_probs=158.7
Q ss_pred eeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCc
Q 017296 63 HGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGE 142 (374)
Q Consensus 63 ~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (374)
..+.+++|.|....+.+++|..-|+|=+||+.+++-....... ...| +.+..+..
T Consensus 187 ~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~---f~~h-----------------s~~Vs~l~----- 241 (498)
T KOG4328|consen 187 RRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYL---FTPH-----------------SGPVSGLK----- 241 (498)
T ss_pred cceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEE---eccC-----------------CccccceE-----
Confidence 4688999998766578889999999999999743211110000 0000 00011111
Q ss_pred eeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCce
Q 017296 143 TVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFV 222 (374)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (374)
+.+.+.. .+++.+.||+|++=|++.+.....+. .+.....++...|... ..
T Consensus 242 -------------F~P~n~s-~i~ssSyDGtiR~~D~~~~i~e~v~s-----------~~~d~~~fs~~d~~~e----~~ 292 (498)
T KOG4328|consen 242 -------------FSPANTS-QIYSSSYDGTIRLQDFEGNISEEVLS-----------LDTDNIWFSSLDFSAE----SR 292 (498)
T ss_pred -------------ecCCChh-heeeeccCceeeeeeecchhhHHHhh-----------cCccceeeeeccccCC----Cc
Confidence 1111111 25677889999999998764321111 0001111111122211 11
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCc-eEEEecCCeEEEEEcCCCCCeEE-EEEeeecCCCC
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNG-GISGGADQKIVLYNLDHSTGSCV-IKKEINLERPG 300 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~s~s~D~~i~lwd~~~~~~~~~-~~~~~~~~~~~ 300 (374)
.++.|..=|...+||++.++.....+.-|...|..|+++|-..+ ++|+|.|+++++||++.-.++.. +.. .-.|+..
T Consensus 293 ~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~ls-t~~Hrrs 371 (498)
T KOG4328|consen 293 SVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLS-TLPHRRS 371 (498)
T ss_pred cEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCccee-cccccce
Confidence 35666666789999999877656666678889999999886654 58999999999999975444332 111 2236667
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEcc----CCeEEEEecccCC------ceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 301 ISGTSIRPDSKIAATAGWDRRVRIYNYR----KGSALAILKYHHA------TCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 301 v~~~~~sp~~~~l~s~~~dg~v~iwd~~----~~~~~~~~~~h~~------~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
|.++.|||.+..|++.+.|.+|+|||.. ..+++.++. |.. .....+|.||..+++.|-.-.-|-|+|-
T Consensus 372 V~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~ 449 (498)
T KOG4328|consen 372 VNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDG 449 (498)
T ss_pred eeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcC
Confidence 9999999998889999999999999983 334444444 322 2344689999889998876666666653
No 161
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.69 E-value=8.4e-14 Score=126.57 Aligned_cols=278 Identities=9% Similarity=0.157 Sum_probs=155.6
Q ss_pred EEEecCCCcEEEEeCcc-cc--eeeeeeeeeceeeeEEeccCCccccceeeec-cccCeEEEEecCC-CCCCCCCceeee
Q 017296 33 LFAGTTGGELRIWDTVQ-HR--TVSSSWVHSAAHGIVSVATGPSIGLNKVISQ-GRDGTVKCWDIEN-GGLSSNPSLTIK 107 (374)
Q Consensus 33 l~s~s~D~~v~vWd~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-~~D~~vrvwd~~~-~~~~~~~~~~~~ 107 (374)
.++...|+.|.+||+.+ ++ .+..+.. ......+++++ +++.|+.+ ..++.|.+|++.. |... .+.
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~---~~~~~~l~~sp--d~~~lyv~~~~~~~i~~~~~~~~g~l~-----~~~ 74 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVDV---PGQVQPMVISP--DKRHLYVGVRPEFRVLSYRIADDGALT-----FAA 74 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEec---CCCCccEEECC--CCCEEEEEECCCCcEEEEEECCCCceE-----Eee
Confidence 44557899999999964 32 2233221 12234456665 55666544 5688999999963 3210 000
Q ss_pred ecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCcee-E
Q 017296 108 TNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERC-T 186 (374)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~-~ 186 (374)
... ... .+. . + .+ .++++++.++...++.|.+||+.+...+ .
T Consensus 75 ~~~-------~~~----------~p~--------~-i----------~~-~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~ 117 (330)
T PRK11028 75 ESP-------LPG----------SPT--------H-I----------ST-DHQGRFLFSASYNANCVSVSPLDKDGIPVA 117 (330)
T ss_pred eec-------CCC----------Cce--------E-E----------EE-CCCCCEEEEEEcCCCeEEEEEECCCCCCCC
Confidence 000 000 000 0 0 01 1234556666666789999999743211 1
Q ss_pred EeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCce----eeee-cCccCeEEEEEe
Q 017296 187 RLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL----TAMK-VHLEPVLCLSID 261 (374)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~----~~~~-~h~~~v~~~~~~ 261 (374)
..... ... .....+ .+.+ .+...+++...++.|.+||+...+... .... ........+.|+
T Consensus 118 ~~~~~-----~~~---~~~~~~---~~~p---~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~ 183 (330)
T PRK11028 118 PIQII-----EGL---EGCHSA---NIDP---DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFH 183 (330)
T ss_pred ceeec-----cCC---CcccEe---EeCC---CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEEC
Confidence 11100 000 001111 1222 233345667788999999997532211 0011 112345678999
Q ss_pred cCCCceEEEec-CCeEEEEEcCCCCCeEEEEEeeecC------CCCeEEEEECCCCCEEEEEeC-CCeEEEEEccCCeEE
Q 017296 262 ESCNGGISGGA-DQKIVLYNLDHSTGSCVIKKEINLE------RPGISGTSIRPDSKIAATAGW-DRRVRIYNYRKGSAL 333 (374)
Q Consensus 262 ~~~~~~~s~s~-D~~i~lwd~~~~~~~~~~~~~~~~~------~~~v~~~~~sp~~~~l~s~~~-dg~v~iwd~~~~~~~ 333 (374)
|++..++++.. +++|.+|+++..++.......+... ......+.|+|++++++++.. +++|.+|++......
T Consensus 184 pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~ 263 (330)
T PRK11028 184 PNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSV 263 (330)
T ss_pred CCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCe
Confidence 99988877665 9999999997543332222222111 112335889999999888754 789999999643211
Q ss_pred EEecccC---CceEEEEEeCCCCEEEEEeC-CCcEEEecCCC
Q 017296 334 AILKYHH---ATCNAVSFSSDCKLMASASE-DSTVALWELYP 371 (374)
Q Consensus 334 ~~~~~h~---~~v~~v~~sp~~~~las~s~-D~~v~~W~~~~ 371 (374)
.++.++. .....++|+|||++|+++.+ +++|.+|+++.
T Consensus 264 ~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 264 LSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred EEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 1222221 24567899999998887765 99999998753
No 162
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.69 E-value=1.4e-15 Score=126.20 Aligned_cols=130 Identities=20% Similarity=0.286 Sum_probs=90.9
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCc-eEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCe
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNG-GISGGADQKIVLYNLDHSTGSCVIKKEINLERPGI 301 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v 301 (374)
.++++.+||.|+|||.|++..|++.+.+|...|.++.|+|.... ++++|.|..|.||..........
T Consensus 229 ~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~q------------ 296 (370)
T KOG1007|consen 229 ILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQ------------ 296 (370)
T ss_pred EEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccc------------
Confidence 57889999999999999999999999999999999999886554 47899999999997643211111
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCC-EEEEEeCCCcEEEecC
Q 017296 302 SGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCK-LMASASEDSTVALWEL 369 (374)
Q Consensus 302 ~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~-~las~s~D~~v~~W~~ 369 (374)
+.|..|..-.--.....+++ ......+.++..|+..|.+++||.-.. .+||-|-||.|-|=++
T Consensus 297 --i~~~~dese~e~~dseer~k---pL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 297 --IEFEDDESESEDEDSEERVK---PLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred --cccccccccCcchhhHHhcc---cccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence 11111111000001112232 112234678889999999999998767 5678899999977554
No 163
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=8.4e-16 Score=130.33 Aligned_cols=240 Identities=21% Similarity=0.282 Sum_probs=143.8
Q ss_pred CEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeecc
Q 017296 31 PILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNS 110 (374)
Q Consensus 31 ~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~ 110 (374)
..++++-..|+|+++|..+++.+..+.++......+.+.-+. ..+.+.|++.||+||+||++...... ++..
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~d--s~h~v~s~ssDG~Vr~wD~Rs~~e~a----~~~~-- 112 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCD--SPHGVISCSSDGTVRLWDIRSQAESA----RISW-- 112 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCC--CCCeeEEeccCCeEEEEEeecchhhh----heec--
Confidence 568888888999999999999888888776554444444332 33678999999999999998753211 0000
Q ss_pred eeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEecc
Q 017296 111 YHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQ 190 (374)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~ 190 (374)
.. . ++..+.+...+- ...+..+
T Consensus 113 --------~~------------------~-------------------~~~~f~~ld~nc-----------k~~ii~~-- 134 (376)
T KOG1188|consen 113 --------TQ------------------Q-------------------SGTPFICLDLNC-----------KKNIIAC-- 134 (376)
T ss_pred --------cC------------------C-------------------CCCcceEeeccC-----------cCCeEEe--
Confidence 00 0 000011111110 0000000
Q ss_pred CccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceee-eecCccCeEEEEEecC-CCceE
Q 017296 191 NSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA-MKVHLEPVLCLSIDES-CNGGI 268 (374)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~-~~~h~~~v~~~~~~~~-~~~~~ 268 (374)
.. .. -..|-.|.+||+|+..+++.. ...|.+.|+++.|+|+ ...++
T Consensus 135 ------------------Gt-------------E~-~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLl 182 (376)
T KOG1188|consen 135 ------------------GT-------------EL-TRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLL 182 (376)
T ss_pred ------------------cc-------------cc-ccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEE
Confidence 00 00 012446899999986654433 4569999999999874 45679
Q ss_pred EEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCC-CEEEEEeCCCeEEEEEccCCe----------------
Q 017296 269 SGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDS-KIAATAGWDRRVRIYNYRKGS---------------- 331 (374)
Q Consensus 269 s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~s~~~dg~v~iwd~~~~~---------------- 331 (374)
|||.||.|.++|++.....-.+...++ +...|..+.|..++ +.|.+-+-+.+..+|+++.+.
T Consensus 183 SGSvDGLvnlfD~~~d~EeDaL~~viN-~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r 261 (376)
T KOG1188|consen 183 SGSVDGLVNLFDTKKDNEEDALLHVIN-HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLR 261 (376)
T ss_pred eecccceEEeeecCCCcchhhHHHhhc-ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHH
Confidence 999999999999975421111111111 22345666666554 224445556666777665431
Q ss_pred ---------------------------------------------EEEEecc-cCCceEEEEEeCCCCEEEEEeCCCcEE
Q 017296 332 ---------------------------------------------ALAILKY-HHATCNAVSFSSDCKLMASASEDSTVA 365 (374)
Q Consensus 332 ---------------------------------------------~~~~~~~-h~~~v~~v~~sp~~~~las~s~D~~v~ 365 (374)
....+++ |.+-|.++-|...+..+.||++||.+.
T Consensus 262 ~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~ 341 (376)
T KOG1188|consen 262 KEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQ 341 (376)
T ss_pred hhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEE
Confidence 1112333 445556666666677899999999999
Q ss_pred EecC
Q 017296 366 LWEL 369 (374)
Q Consensus 366 ~W~~ 369 (374)
+|..
T Consensus 342 ~Wk~ 345 (376)
T KOG1188|consen 342 AWKV 345 (376)
T ss_pred EEec
Confidence 9984
No 164
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=6.2e-16 Score=136.71 Aligned_cols=308 Identities=18% Similarity=0.208 Sum_probs=198.3
Q ss_pred CeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeee-eeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 10 PVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSW-VHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 10 ~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
+...|.+|.+.|+.|.|+..|.+|+|||.|..|.+||...++....+. +|. ..+....|-|.-+.+.+++.+.||++
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~--~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHC--NNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccc--cchhhhhccCCCCCcCceeccccCce
Confidence 456789999999999999999999999999999999998887665543 332 23444446555566789999999999
Q ss_pred EEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcc
Q 017296 89 KCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAG 168 (374)
Q Consensus 89 rvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (374)
|+=.+....+...+ ..+..+..+..+ ...+ + +..+-+.++
T Consensus 212 r~s~i~~t~~~e~t-~rl~~h~g~vhk--------------------lav~------------------p-~sp~~f~S~ 251 (559)
T KOG1334|consen 212 RVSEILETGYVENT-KRLAPHEGPVHK--------------------LAVE------------------P-DSPKPFLSC 251 (559)
T ss_pred eeeeeccccceecc-eecccccCccce--------------------eeec------------------C-CCCCccccc
Confidence 99887543211000 000000000000 0011 1 112335667
Q ss_pred cCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCC-----
Q 017296 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI----- 243 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~----- 243 (374)
+.|+.+.=.|++++.....+..... ......+-..+++. | .+...+++|..|..+++||.+.-..
T Consensus 252 geD~~v~~~Dlr~~~pa~~~~cr~~----~~~~~v~L~~Ia~~---P---~nt~~faVgG~dqf~RvYD~R~~~~e~~n~ 321 (559)
T KOG1334|consen 252 GEDAVVFHIDLRQDVPAEKFVCREA----DEKERVGLYTIAVD---P---RNTNEFAVGGSDQFARVYDQRRIDKEENNG 321 (559)
T ss_pred ccccceeeeeeccCCccceeeeecc----CCccceeeeeEecC---C---CCccccccCChhhhhhhhcccchhhccccc
Confidence 7788888889888754333321100 00000111222221 1 2223588899999999999864211
Q ss_pred ceeeee------cCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCC------e---EEEEEeeecCC--CCeEEEE-
Q 017296 244 PLTAMK------VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTG------S---CVIKKEINLER--PGISGTS- 305 (374)
Q Consensus 244 ~~~~~~------~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~------~---~~~~~~~~~~~--~~v~~~~- 305 (374)
++..+. ...-.|+|+.++.++.-++++=.|-.|.|++-+...+ . ......++.|+ ..|..+-
T Consensus 322 ~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNF 401 (559)
T KOG1334|consen 322 VLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNF 401 (559)
T ss_pred hhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeee
Confidence 111111 1223689999976655567777788899986543333 1 11111133443 2355564
Q ss_pred ECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 306 IRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 306 ~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
|-|...|++||+.=|.|.||+..+++.+..+.+....|+||.=+|--..|||++-|.-||||.-
T Consensus 402 fGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 402 FGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred ccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecC
Confidence 5799999999999999999999999988878776679999999998889999999999999975
No 165
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.66 E-value=2.9e-14 Score=120.53 Aligned_cols=298 Identities=15% Similarity=0.215 Sum_probs=184.2
Q ss_pred EEeecCCCceeEEEEeC-----CCCEEEEecCCCcEEEEeCcccc---eeeeeeeeeceeeeEEeccCCcc--ccceeee
Q 017296 12 AVLRGHRASVTDVCFHQ-----TKPILFAGTTGGELRIWDTVQHR---TVSSSWVHSAAHGIVSVATGPSI--GLNKVIS 81 (374)
Q Consensus 12 ~~l~gH~~~V~~l~~~~-----~~~~l~s~s~D~~v~vWd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s 81 (374)
...++|..+|..++|++ +...++|++. ..+-+++....- .+..............++++... ..-.++.
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~ 110 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA 110 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence 34568999999999984 2345666664 567777754322 22222111122334445444321 1236778
Q ss_pred ccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCC
Q 017296 82 QGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGP 161 (374)
Q Consensus 82 ~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (374)
||.-|.||+.|+.++++... + ..|..++. + ..+.+.++
T Consensus 111 ~G~~GvIrVid~~~~~~~~~--~-----~ghG~sIN------------------------e-----------ik~~p~~~ 148 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSGQCSKN--Y-----RGHGGSIN------------------------E-----------IKFHPDRP 148 (385)
T ss_pred ecceeEEEEEecchhhhccc--e-----eccCccch------------------------h-----------hhcCCCCC
Confidence 88999999999988754210 0 01110000 0 01122333
Q ss_pred ceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCC
Q 017296 162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 241 (374)
Q Consensus 162 ~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~ 241 (374)
. ++++++.|..||+|++.+..++.-+.+-+ ++ .... +++ .|.+ ....+++++-|.+|++|++..+
T Consensus 149 q-lvls~SkD~svRlwnI~~~~Cv~VfGG~e-----gH--rdeV--LSv-D~~~----~gd~i~ScGmDhslk~W~l~~~ 213 (385)
T KOG1034|consen 149 Q-LVLSASKDHSVRLWNIQTDVCVAVFGGVE-----GH--RDEV--LSV-DFSL----DGDRIASCGMDHSLKLWRLNVK 213 (385)
T ss_pred c-EEEEecCCceEEEEeccCCeEEEEecccc-----cc--cCcE--EEE-EEcC----CCCeeeccCCcceEEEEecChh
Confidence 3 56778889999999999999988775432 11 1222 222 2322 2236999999999999999632
Q ss_pred CC-----------------ce----------eeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCC----------C
Q 017296 242 GI-----------------PL----------TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH----------S 284 (374)
Q Consensus 242 ~~-----------------~~----------~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~----------~ 284 (374)
.. ++ .+-.-|..+|.|+.|-+ ..+++-|.++.|..|.... +
T Consensus 214 ~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g--d~ilSkscenaI~~w~pgkl~e~~~~vkp~ 291 (385)
T KOG1034|consen 214 EFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG--DFILSKSCENAIVCWKPGKLEESIHNVKPP 291 (385)
T ss_pred HHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh--hheeecccCceEEEEecchhhhhhhccCCC
Confidence 10 00 01123677777777765 3568999999999997621 1
Q ss_pred CCeEEEEEeeecCCCCeEEE--EECCCCCEEEEEeCCCeEEEEEccCCeE--EEEeccc--CCceEEEEEeCCCCEEEEE
Q 017296 285 TGSCVIKKEINLERPGISGT--SIRPDSKIAATAGWDRRVRIYNYRKGSA--LAILKYH--HATCNAVSFSSDCKLMASA 358 (374)
Q Consensus 285 ~~~~~~~~~~~~~~~~v~~~--~~sp~~~~l~s~~~dg~v~iwd~~~~~~--~~~~~~h--~~~v~~v~~sp~~~~las~ 358 (374)
........+++.....++-+ +|.|-+++||.|...|+|.+||++..++ ..++..+ ...|...+|+-||..|+..
T Consensus 292 es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~v 371 (385)
T KOG1034|consen 292 ESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLV 371 (385)
T ss_pred ccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEE
Confidence 11122233455555455555 5567788999999999999999976554 2334322 2467888999999999999
Q ss_pred eCCCcEEEecC
Q 017296 359 SEDSTVALWEL 369 (374)
Q Consensus 359 s~D~~v~~W~~ 369 (374)
..|++|--||.
T Consensus 372 cdd~~Vwrwdr 382 (385)
T KOG1034|consen 372 CDDGTVWRWDR 382 (385)
T ss_pred eCCCcEEEEEe
Confidence 99999988885
No 166
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.66 E-value=2.7e-14 Score=134.13 Aligned_cols=270 Identities=17% Similarity=0.213 Sum_probs=168.5
Q ss_pred CCCeEEeecCCCceeEEEEeC-CCCEEEEecCCCcEEEEeCcccce--eeeee--eeeceeeeEEeccCCccccceeeec
Q 017296 8 PDPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRT--VSSSW--VHSAAHGIVSVATGPSIGLNKVISQ 82 (374)
Q Consensus 8 ~~~~~~l~gH~~~V~~l~~~~-~~~~l~s~s~D~~v~vWd~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~l~s~ 82 (374)
..|..++. -...|+|++|+| +..+|+.|..+|.|.+||+..+.. ...+. .|.+...++.+.+-......-++|+
T Consensus 233 ~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ 311 (555)
T KOG1587|consen 233 NTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSL 311 (555)
T ss_pred CCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEE
Confidence 44554544 578899999998 567899999999999999876653 22222 2333344666666554343568999
Q ss_pred cccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCc
Q 017296 83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPK 162 (374)
Q Consensus 83 ~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (374)
+.||.|..|+++--. .|.... ..+... +
T Consensus 312 ssDG~i~~W~~~~l~---~P~e~~------------------------------~~~~~~-------------------~ 339 (555)
T KOG1587|consen 312 SSDGSICSWDTDMLS---LPVEGL------------------------------LLESKK-------------------H 339 (555)
T ss_pred ecCCcEeeeeccccc---cchhhc------------------------------cccccc-------------------c
Confidence 999999999875311 110000 000000 0
Q ss_pred eEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEE---ecc
Q 017296 163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW---DIR 239 (374)
Q Consensus 163 ~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iw---dl~ 239 (374)
-+ -..| .........|.+. ....++.|+++|.|.-= +++
T Consensus 340 ----~~-----~~~~--------------------------~~~~~t~~~F~~~---~p~~FiVGTe~G~v~~~~r~g~~ 381 (555)
T KOG1587|consen 340 ----KG-----QQSS--------------------------KAVGATSLKFEPT---DPNHFIVGTEEGKVYKGCRKGYT 381 (555)
T ss_pred ----cc-----cccc--------------------------cccceeeEeeccC---CCceEEEEcCCcEEEEEeccCCc
Confidence 00 0000 0000011122222 12258889999988772 232
Q ss_pred CCC----CceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCC-EEE
Q 017296 240 NPG----IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSK-IAA 314 (374)
Q Consensus 240 ~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~ 314 (374)
... ..+..+..|..+|+++.++|-..-+...+.|-++++|.....+. .++ ....+...+.+++|||... .++
T Consensus 382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~-Pl~--~~~~~~~~v~~vaWSptrpavF~ 458 (555)
T KOG1587|consen 382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIAS-PLL--SLDSSPDYVTDVAWSPTRPAVFA 458 (555)
T ss_pred ccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCC-cch--hhhhccceeeeeEEcCcCceEEE
Confidence 222 22345567889999999988655555555599999998752221 111 1222334589999999754 578
Q ss_pred EEeCCCeEEEEEccCC--eEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCC
Q 017296 315 TAGWDRRVRIYNYRKG--SALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 315 s~~~dg~v~iwd~~~~--~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~ 371 (374)
++..||.+.+||+... ++....+-+......+.|+++|+.|+.|...|++.+|++.+
T Consensus 459 ~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 459 TVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred EEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 8888999999999643 44544544556677788999999999999999999999854
No 167
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=1.7e-15 Score=146.57 Aligned_cols=292 Identities=21% Similarity=0.285 Sum_probs=182.8
Q ss_pred EEEEeCCCC-EEEEe----------cCCCcEEEEeCcccce---eeeeeeeeceeeeEEeccCCccccc--eeeeccccC
Q 017296 23 DVCFHQTKP-ILFAG----------TTGGELRIWDTVQHRT---VSSSWVHSAAHGIVSVATGPSIGLN--KVISQGRDG 86 (374)
Q Consensus 23 ~l~~~~~~~-~l~s~----------s~D~~v~vWd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~--~l~s~~~D~ 86 (374)
.+||+|.+. +|++| |.+.++.+|.+..... +.....+....+...++|+...++. .++.|..||
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG 90 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDG 90 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccCC
Confidence 368888875 34433 3455667776532111 1111112333567778887654322 477888999
Q ss_pred eEEEEecCCCCCCCCCce-eeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEE
Q 017296 87 TVKCWDIENGGLSSNPSL-TIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA 165 (374)
Q Consensus 87 ~vrvwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (374)
.|-+||...= ...... .+....-| . ..+... ++.. .+.-++
T Consensus 91 ~I~ly~p~~~--~~~~~~~~la~~~~h----------~---------G~V~gL----------------DfN~-~q~nlL 132 (1049)
T KOG0307|consen 91 NIVLYDPASI--IANASEEVLATKSKH----------T---------GPVLGL----------------DFNP-FQGNLL 132 (1049)
T ss_pred ceEEecchhh--ccCcchHHHhhhccc----------C---------Cceeee----------------eccc-cCCcee
Confidence 9999998641 000000 00000000 0 000000 1111 123468
Q ss_pred EcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCce
Q 017296 166 VAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL 245 (374)
Q Consensus 166 ~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~ 245 (374)
++|..|+.|.|||+...+.-... ++.. ......|++ .+ . .....|++++.+|.+-|||+|.. .++
T Consensus 133 ASGa~~geI~iWDlnn~~tP~~~------~~~~--~~~eI~~ls---WN--r-kvqhILAS~s~sg~~~iWDlr~~-~pi 197 (1049)
T KOG0307|consen 133 ASGADDGEILIWDLNKPETPFTP------GSQA--PPSEIKCLS---WN--R-KVSHILASGSPSGRAVIWDLRKK-KPI 197 (1049)
T ss_pred eccCCCCcEEEeccCCcCCCCCC------CCCC--CcccceEec---cc--h-hhhHHhhccCCCCCceeccccCC-Ccc
Confidence 89999999999999864321111 0000 111111111 10 0 11114778999999999999974 455
Q ss_pred eeeecCcc--CeEEEEEecCCC-ceEEEecCC---eEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCC-CEEEEEeC
Q 017296 246 TAMKVHLE--PVLCLSIDESCN-GGISGGADQ---KIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDS-KIAATAGW 318 (374)
Q Consensus 246 ~~~~~h~~--~v~~~~~~~~~~-~~~s~s~D~---~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~s~~~ 318 (374)
..+..+.. .+..+.++|+.. .+++++.|. .|.+||++.-+. -.+++..|..+|.++.|++.+ .+++|.+.
T Consensus 198 i~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass---P~k~~~~H~~GilslsWc~~D~~lllSsgk 274 (1049)
T KOG0307|consen 198 IKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS---PLKILEGHQRGILSLSWCPQDPRLLLSSGK 274 (1049)
T ss_pred cccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCC---chhhhcccccceeeeccCCCCchhhhcccC
Confidence 55655554 366788888754 456666654 799999875321 123456788899999999865 88999999
Q ss_pred CCeEEEEEccCCeEEEEecccCCceEEEEEeCCCC-EEEEEeCCCcEEEecCC
Q 017296 319 DRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCK-LMASASEDSTVALWELY 370 (374)
Q Consensus 319 dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~-~las~s~D~~v~~W~~~ 370 (374)
|++|-.|+.++++.+..+....+.+..+.|+|... .++.++-||.|.|+++.
T Consensus 275 D~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 275 DNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQ 327 (1049)
T ss_pred CCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeee
Confidence 99999999999999999988788999999999877 78889999999999874
No 168
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=1.7e-15 Score=136.16 Aligned_cols=219 Identities=20% Similarity=0.274 Sum_probs=133.0
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcc------cc---e-eeeeeeeeceeeeEEeccCCccccce
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ------HR---T-VSSSWVHSAAHGIVSVATGPSIGLNK 78 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~------~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (374)
+|+.+|++|.++|.|+++++.+..++||+.||+|+.|++.. .. . ...+.||... +-.++++... .+
T Consensus 335 epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtda--vw~l~~s~~~--~~ 410 (577)
T KOG0642|consen 335 EPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDA--VWLLALSSTK--DR 410 (577)
T ss_pred eeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccc--eeeeeecccc--cc
Confidence 69999999999999999999999999999999999996531 11 1 1245566543 4456666533 56
Q ss_pred eeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCC
Q 017296 79 VISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPA 158 (374)
Q Consensus 79 l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (374)
|++++.|||+|.|+........ +.........-.+.+.+..
T Consensus 411 Llscs~DgTvr~w~~~~~~~~~---f~~~~e~g~Plsvd~~ss~------------------------------------ 451 (577)
T KOG0642|consen 411 LLSCSSDGTVRLWEPTEESPCT---FGEPKEHGYPLSVDRTSSR------------------------------------ 451 (577)
T ss_pred eeeecCCceEEeeccCCcCccc---cCCccccCCcceEeeccch------------------------------------
Confidence 9999999999999997643200 0000000000000000000
Q ss_pred CCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEec
Q 017296 159 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 238 (374)
Q Consensus 159 ~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl 238 (374)
. ...++....+...+.|++....+..+......+.... +... .+ . . ..+....+++..|+.|+++|.
T Consensus 452 --~-a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~-~~in-~v-----V--s-~~~~~~~~~~hed~~Ir~~dn 518 (577)
T KOG0642|consen 452 --P-AHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRY-PQIN-KV-----V--S-HPTADITFTAHEDRSIRFFDN 518 (577)
T ss_pred --h-HhhhhhcccccccchhhhhhhheeeccccCCCccccc-Cccc-eE-----E--e-cCCCCeeEecccCCceecccc
Confidence 0 0011111112222333333333333322111111000 0000 00 0 1 112246788999999999998
Q ss_pred cCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCC
Q 017296 239 RNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS 284 (374)
Q Consensus 239 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~ 284 (374)
.. +.++.....|...++++++++++.++++++.|+.+++|.++..
T Consensus 519 ~~-~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 519 KT-GKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred cc-cccchheeeccceecceeecCCCceEEeecCCceeehhhccch
Confidence 76 4567777889999999999999999999999999999998654
No 169
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=2e-14 Score=126.51 Aligned_cols=254 Identities=12% Similarity=0.200 Sum_probs=163.0
Q ss_pred CeEEeecCCCceeEEEEeCCCC-EEEEecCCCcEEEEeCcccce--eeeeeeeeceeeeEEeccCCccccceeeeccccC
Q 017296 10 PVAVLRGHRASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRT--VSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (374)
Q Consensus 10 ~~~~l~gH~~~V~~l~~~~~~~-~l~s~s~D~~v~vWd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ 86 (374)
.++.++=-..+|.+.+|.|+|. .+++++.-..+..||+++.+. +....++. ...+..+..++ +++.++..|..|
T Consensus 249 ~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e-~~~~e~FeVSh--d~~fia~~G~~G 325 (514)
T KOG2055|consen 249 KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVE-EKSMERFEVSH--DSNFIAIAGNNG 325 (514)
T ss_pred hheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcc-cchhheeEecC--CCCeEEEcccCc
Confidence 4445555578999999999998 899999999999999988763 22222222 11233334444 667899999999
Q ss_pred eEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEE
Q 017296 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (374)
Q Consensus 87 ~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (374)
-|.+-...+++.+..-++......+ .+..++ +.+++
T Consensus 326 ~I~lLhakT~eli~s~KieG~v~~~-------------------------------------------~fsSds-k~l~~ 361 (514)
T KOG2055|consen 326 HIHLLHAKTKELITSFKIEGVVSDF-------------------------------------------TFSSDS-KELLA 361 (514)
T ss_pred eEEeehhhhhhhhheeeeccEEeeE-------------------------------------------EEecCC-cEEEE
Confidence 9999888877543211100000000 011223 33344
Q ss_pred cccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCC-----
Q 017296 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP----- 241 (374)
Q Consensus 167 ~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~----- 241 (374)
++ .++.|.+||+++..++.......+. .+..+|. +.+..++++||+.|-|-|||..+.
T Consensus 362 ~~-~~GeV~v~nl~~~~~~~rf~D~G~v-------~gts~~~---------S~ng~ylA~GS~~GiVNIYd~~s~~~s~~ 424 (514)
T KOG2055|consen 362 SG-GTGEVYVWNLRQNSCLHRFVDDGSV-------HGTSLCI---------SLNGSYLATGSDSGIVNIYDGNSCFASTN 424 (514)
T ss_pred Ec-CCceEEEEecCCcceEEEEeecCcc-------ceeeeee---------cCCCceEEeccCcceEEEeccchhhccCC
Confidence 44 4579999999998777666432110 1111221 123337999999999999997431
Q ss_pred CCceeeeecCccCeEEEEEecCCCceEEEe--cCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCC
Q 017296 242 GIPLTAMKVHLEPVLCLSIDESCNGGISGG--ADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWD 319 (374)
Q Consensus 242 ~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s--~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d 319 (374)
..|+.++.--+..|+.|.|+++...++.+| .++.+||--+..-+ ....-+..+..-..+++++|||.+.+||.|..+
T Consensus 425 PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~T-VFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~ 503 (514)
T KOG2055|consen 425 PKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCT-VFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEA 503 (514)
T ss_pred CCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEecccee-eeccCCCCCCcccceEEEEecCCCceEEeecCC
Confidence 245555555677899999998887776555 57788886543211 000111222333569999999999999999999
Q ss_pred CeEEEEEcc
Q 017296 320 RRVRIYNYR 328 (374)
Q Consensus 320 g~v~iwd~~ 328 (374)
|+|.+|.+.
T Consensus 504 grv~l~kL~ 512 (514)
T KOG2055|consen 504 GRVHLFKLH 512 (514)
T ss_pred CceeeEeec
Confidence 999999763
No 170
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.63 E-value=4.2e-12 Score=117.96 Aligned_cols=289 Identities=27% Similarity=0.470 Sum_probs=191.6
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecC-CCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccc-eeeeccccC
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTT-GGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLN-KVISQGRDG 86 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~-D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~D~ 86 (374)
.....+.+|...|.+++|++++..+++++. |+.+++|+...+..+..+..|.. .+.++.+.+ ++. .+++++.|+
T Consensus 146 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~--~~~~~~~~~~~d~ 221 (466)
T COG2319 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTD--PVSSLAFSP--DGGLLIASGSSDG 221 (466)
T ss_pred eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCC--ceEEEEEcC--CcceEEEEecCCC
Confidence 567789999999999999999999999886 99999999988777777666543 467777775 444 555669999
Q ss_pred eEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEE
Q 017296 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (374)
Q Consensus 87 ~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (374)
++++||...+..... ....|... . . . .+.+.+ . +++
T Consensus 222 ~i~~wd~~~~~~~~~------~~~~~~~~--------------------~-~------~---------~~~~~~-~-~~~ 257 (466)
T COG2319 222 TIRLWDLSTGKLLRS------TLSGHSDS--------------------V-V------S---------SFSPDG-S-LLA 257 (466)
T ss_pred cEEEEECCCCcEEee------ecCCCCcc--------------------e-e------E---------eECCCC-C-EEE
Confidence 999998764421100 00000000 0 0 0 011222 2 344
Q ss_pred cccCCCeEEEEecCCCce-eEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCce
Q 017296 167 AGEQLSEVEIWDLNTAER-CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPL 245 (374)
Q Consensus 167 ~~~~d~~i~vWd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~ 245 (374)
++..|+.+++||+..... +..+.. + .....+. .+.+ .. ..+++++.|+.+++||++.... .
T Consensus 258 ~~~~d~~~~~~~~~~~~~~~~~~~~--------~--~~~v~~~---~~~~---~~-~~~~~~~~d~~~~~~~~~~~~~-~ 319 (466)
T COG2319 258 SGSSDGTIRLWDLRSSSSLLRTLSG--------H--SSSVLSV---AFSP---DG-KLLASGSSDGTVRLWDLETGKL-L 319 (466)
T ss_pred EecCCCcEEEeeecCCCcEEEEEec--------C--CccEEEE---EECC---CC-CEEEEeeCCCcEEEEEcCCCce-E
Confidence 778889999999987664 333311 1 0111111 2333 12 2456688889999999876432 2
Q ss_pred eee--ecCccCeEEEEEecCC-CceEEE-ecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEE-EeCCC
Q 017296 246 TAM--KVHLEPVLCLSIDESC-NGGISG-GADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAAT-AGWDR 320 (374)
Q Consensus 246 ~~~--~~h~~~v~~~~~~~~~-~~~~s~-s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s-~~~dg 320 (374)
... ..|...+..+.+ ... ..++.+ ..|+.+.+|++.... .. ...... ..+..+.+++ ...+.+ +..++
T Consensus 320 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~--~~--~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~ 392 (466)
T COG2319 320 SSLTLKGHEGPVSSLSF-SPDGSLLVSGGSDDGTIRLWDLRTGK--PL--KTLEGH-SNVLSVSFSP-DGRVVSSGSTDG 392 (466)
T ss_pred EEeeecccCCceEEEEE-CCCCCEEEEeecCCCcEEeeecCCCc--ee--EEecCC-ceEEEEEECC-CCCEEEEecCCC
Confidence 233 367778888888 432 344444 688999999987543 11 111111 1277888988 544444 68899
Q ss_pred eEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 321 RVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 321 ~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
.+.+|+............+...+....+++++..+++++.+.++++|+..
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (466)
T COG2319 393 TVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLK 442 (466)
T ss_pred ceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEecc
Confidence 99999998887776665443788889999999999999999999999875
No 171
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=6.4e-14 Score=132.76 Aligned_cols=241 Identities=10% Similarity=0.074 Sum_probs=151.7
Q ss_pred CCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCC
Q 017296 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENG 96 (374)
Q Consensus 17 H~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~ 96 (374)
|...|.+++- ...+|++|+.+++|.++...+++.-..+.-.. ..+..++++. +++.++.||.|-.|++-++...
T Consensus 55 ~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rft--lp~r~~~v~g--~g~~iaagsdD~~vK~~~~~D~ 128 (933)
T KOG1274|consen 55 SGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGEEDTILARFT--LPIRDLAVSG--SGKMIAAGSDDTAVKLLNLDDS 128 (933)
T ss_pred cCceeEEEee--cccceEEeeccceEEEeeCCCCCccceeeeee--ccceEEEEec--CCcEEEeecCceeEEEEecccc
Confidence 8888888776 45599999999999999988776422222122 2356666665 5689999999999999998754
Q ss_pred CCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEE
Q 017296 97 GLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEI 176 (374)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v 176 (374)
... ...+.+... ..+.... ++ ..++++.+-||+|++
T Consensus 129 s~~----~~lrgh~ap--------------------Vl~l~~~-------------------p~-~~fLAvss~dG~v~i 164 (933)
T KOG1274|consen 129 SQE----KVLRGHDAP--------------------VLQLSYD-------------------PK-GNFLAVSSCDGKVQI 164 (933)
T ss_pred chh----eeecccCCc--------------------eeeeeEc-------------------CC-CCEEEEEecCceEEE
Confidence 211 011000000 0000011 11 123444455677777
Q ss_pred EecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeE
Q 017296 177 WDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVL 256 (374)
Q Consensus 177 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~ 256 (374)
||+.++.+..++..- .+-.+.. -...+.
T Consensus 165 w~~~~~~~~~tl~~v-----------------------------------------~k~n~~~-----------~s~i~~ 192 (933)
T KOG1274|consen 165 WDLQDGILSKTLTGV-----------------------------------------DKDNEFI-----------LSRICT 192 (933)
T ss_pred EEcccchhhhhcccC-----------------------------------------Ccccccc-----------ccceee
Confidence 776655432222100 0000000 034556
Q ss_pred EEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEe
Q 017296 257 CLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAIL 336 (374)
Q Consensus 257 ~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 336 (374)
.++|+|++..++..+.|+.|++|+.+.......++ .+.+...+..++|+|+|+|||+++.||.|.|||+++.+
T Consensus 193 ~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr--~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~----- 265 (933)
T KOG1274|consen 193 RLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLR--DKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHE----- 265 (933)
T ss_pred eeeecCCCCeEEeeccCCeEEEEccCCceeheeec--ccccccceEEEEEcCCCcEEeeeccCCcEEEEecccch-----
Confidence 68899998889999999999999887554333332 23344458889999999999999999999999998722
Q ss_pred cccC--CceEEEEEeCCCCEEEEEeCCCcEEEe
Q 017296 337 KYHH--ATCNAVSFSSDCKLMASASEDSTVALW 367 (374)
Q Consensus 337 ~~h~--~~v~~v~~sp~~~~las~s~D~~v~~W 367 (374)
.|. ..|.+++|.|+...|-.-.+-|+..+|
T Consensus 266 -~~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 266 -RHEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred -hccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 243 589999999988765433334444333
No 172
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=3.1e-14 Score=120.91 Aligned_cols=192 Identities=17% Similarity=0.325 Sum_probs=134.3
Q ss_pred EEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCC
Q 017296 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243 (374)
Q Consensus 164 ~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~ 243 (374)
.++++-.++.|+++|..+++.+..+.... +....+ .|.... ....+.+++.||+||+||+|....
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~--------~~~N~v-----rf~~~d--s~h~v~s~ssDG~Vr~wD~Rs~~e 106 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPP--------ATTNGV-----RFISCD--SPHGVISCSSDGTVRLWDIRSQAE 106 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCC--------Ccccce-----EEecCC--CCCeeEEeccCCeEEEEEeecchh
Confidence 35566667899999999988777765431 111111 232221 222588999999999999987542
Q ss_pred -ceeeeecCc-cCeEEEEEecCCCceEEEe----cCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECC-CCCEEEEE
Q 017296 244 -PLTAMKVHL-EPVLCLSIDESCNGGISGG----ADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP-DSKIAATA 316 (374)
Q Consensus 244 -~~~~~~~h~-~~v~~~~~~~~~~~~~s~s----~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~ 316 (374)
.+.....+. .+..|+...-+...++.|. .|-.+.+||++..+ +.+..-...|.+.|+.+.|+| +..+|+||
T Consensus 107 ~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~q--q~l~~~~eSH~DDVT~lrFHP~~pnlLlSG 184 (376)
T KOG1188|consen 107 SARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQ--QLLRQLNESHNDDVTQLRFHPSDPNLLLSG 184 (376)
T ss_pred hhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEecccc--chhhhhhhhccCcceeEEecCCCCCeEEee
Confidence 344445554 5677776654555555553 47899999997543 212223456788899999999 57789999
Q ss_pred eCCCeEEEEEccCCe---E-EEEecccCCceEEEEEeCCC-CEEEEEeCCCcEEEecCCCCC
Q 017296 317 GWDRRVRIYNYRKGS---A-LAILKYHHATCNAVSFSSDC-KLMASASEDSTVALWELYPPH 373 (374)
Q Consensus 317 ~~dg~v~iwd~~~~~---~-~~~~~~h~~~v~~v~~sp~~-~~las~s~D~~v~~W~~~~~~ 373 (374)
+.||.|.+||++... . +.++ .|...|..+.|..++ +.|..-+...+..+|++.+.+
T Consensus 185 SvDGLvnlfD~~~d~EeDaL~~vi-N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 185 SVDGLVNLFDTKKDNEEDALLHVI-NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS 245 (376)
T ss_pred cccceEEeeecCCCcchhhHHHhh-cccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence 999999999996542 2 3333 477889999999887 468888999999999997653
No 173
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=3e-13 Score=116.95 Aligned_cols=279 Identities=15% Similarity=0.205 Sum_probs=173.6
Q ss_pred CCceeEEEEeCCC--CEEEEecCCCcEEEEeCcccceeeee----eeeeceeeeEEeccCCccccceeeeccccCeEEEE
Q 017296 18 RASVTDVCFHQTK--PILFAGTTGGELRIWDTVQHRTVSSS----WVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (374)
Q Consensus 18 ~~~V~~l~~~~~~--~~l~s~s~D~~v~vWd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvw 91 (374)
...|..++|..++ ..|+..+.|..+......+....... ..+.....+..+.... ..|+++-.+|.+.+|
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~d----g~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLAD----GTLITCVSSGNLQVR 130 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcC----CEEEEEecCCcEEEE
Confidence 4667888887655 34555557777777666554433222 1121222233333322 368888899999999
Q ss_pred ecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCC
Q 017296 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL 171 (374)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 171 (374)
....+-.-..+...+.....- +... -.+...+++++|+..
T Consensus 131 ~~k~~d~hss~l~~la~g~g~----------------------~~~r------------------~~~~~p~Iva~GGke 170 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKLATGPGL----------------------YDVR------------------QTDTDPYIVATGGKE 170 (412)
T ss_pred eccCCccccccceeeecCCce----------------------eeec------------------cCCCCCceEecCchh
Confidence 998764322222111111000 0000 012234566667766
Q ss_pred --CeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeee
Q 017296 172 --SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK 249 (374)
Q Consensus 172 --~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~ 249 (374)
+.+++||++..+.+....... ....+. ......+. ..|.+... ...+++++.-++||+||.+.+..|+..+.
T Consensus 171 ~~n~lkiwdle~~~qiw~aKNvp-nD~L~L--rVPvW~td-i~Fl~g~~--~~~fat~T~~hqvR~YDt~~qRRPV~~fd 244 (412)
T KOG3881|consen 171 NINELKIWDLEQSKQIWSAKNVP-NDRLGL--RVPVWITD-IRFLEGSP--NYKFATITRYHQVRLYDTRHQRRPVAQFD 244 (412)
T ss_pred cccceeeeecccceeeeeccCCC-Cccccc--eeeeeecc-ceecCCCC--CceEEEEecceeEEEecCcccCcceeEec
Confidence 789999999886554332110 000110 01111111 12443221 23589999999999999998888898888
Q ss_pred cCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccC
Q 017296 250 VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRK 329 (374)
Q Consensus 250 ~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~ 329 (374)
.-..++.++...|+++.+++|..-+.+..+|++... +....++.....++++..+|+.+++|++|.|+.|||+|+++
T Consensus 245 ~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~k---l~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 245 FLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGK---LLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred cccCcceeeeecCCCcEEEEecccchhheecccCce---eeccccCCccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence 889999999999999999999999999999986431 22222444456799999999999999999999999999988
Q ss_pred CeEEEEecccCCceEEEEEeC
Q 017296 330 GSALAILKYHHATCNAVSFSS 350 (374)
Q Consensus 330 ~~~~~~~~~h~~~v~~v~~sp 350 (374)
.+.+... .-....+++-+.+
T Consensus 322 rkll~kv-YvKs~lt~il~~~ 341 (412)
T KOG3881|consen 322 RKLLHKV-YVKSRLTFILLRD 341 (412)
T ss_pred chhhhhh-hhhccccEEEecC
Confidence 5554321 1233455666644
No 174
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.60 E-value=1.5e-13 Score=116.04 Aligned_cols=191 Identities=17% Similarity=0.304 Sum_probs=128.8
Q ss_pred EEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCC
Q 017296 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI 243 (374)
Q Consensus 164 ~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~ 243 (374)
++++++.+.-|++||..+|+.-..... +....+.+......|.++ |. .|++|. ...|++||+..++.
T Consensus 125 l~a~ssr~~PIh~wdaftG~lraSy~~--------ydh~de~taAhsL~Fs~D---Ge-qlfaGy-krcirvFdt~RpGr 191 (406)
T KOG2919|consen 125 LFAVSSRDQPIHLWDAFTGKLRASYRA--------YDHQDEYTAAHSLQFSPD---GE-QLFAGY-KRCIRVFDTSRPGR 191 (406)
T ss_pred eeeeccccCceeeeeccccccccchhh--------hhhHHhhhhheeEEecCC---CC-eEeecc-cceEEEeeccCCCC
Confidence 455667789999999999985444321 112122221122245554 32 355554 67999999944442
Q ss_pred --ceeeeecC-----ccCeEEEEEecCCC-ceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEE
Q 017296 244 --PLTAMKVH-----LEPVLCLSIDESCN-GGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAAT 315 (374)
Q Consensus 244 --~~~~~~~h-----~~~v~~~~~~~~~~-~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s 315 (374)
+..+...+ ..-|.|++|+|... .++.|+...++-|+.-+....- ..+..|..+|+-++|.++|..+.+
T Consensus 192 ~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl----~llggh~gGvThL~~~edGn~lfs 267 (406)
T KOG2919|consen 192 DCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPL----QLLGGHGGGVTHLQWCEDGNKLFS 267 (406)
T ss_pred CCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCce----eeecccCCCeeeEEeccCcCeecc
Confidence 22221122 45688899987543 6788888888888865443222 223467889999999999999998
Q ss_pred EeC-CCeEEEEEccCC-eEEEEecccCC-ceEEEE--EeCCCCEEEEEeCCCcEEEecCCC
Q 017296 316 AGW-DRRVRIYNYRKG-SALAILKYHHA-TCNAVS--FSSDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 316 ~~~-dg~v~iwd~~~~-~~~~~~~~h~~-~v~~v~--~sp~~~~las~s~D~~v~~W~~~~ 371 (374)
|.. |-+|..||++.. .++..|..|.. .--.|- ..|++++||+|+.||.|++||+..
T Consensus 268 GaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 268 GARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred cccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence 886 778999999754 55667777875 333344 468999999999999999999965
No 175
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.60 E-value=1.4e-13 Score=119.13 Aligned_cols=218 Identities=19% Similarity=0.310 Sum_probs=131.7
Q ss_pred CCCCCCCeEEeecCCCceeEEEEeC-CCCEEEEecCCCcEEEEeCccc-------ceeeeeeeeeceeeeEEeccCCccc
Q 017296 4 RPPPPDPVAVLRGHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQH-------RTVSSSWVHSAAHGIVSVATGPSIG 75 (374)
Q Consensus 4 ~~~~~~~~~~l~gH~~~V~~l~~~~-~~~~l~s~s~D~~v~vWd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (374)
.....+..-.+.||+++|..++|+| ++..++|||+|.+|+||+...+ +++..+.+|... +-.+.+.+. .
T Consensus 67 ~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rr--Vg~V~wHPt-A 143 (472)
T KOG0303|consen 67 TGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRR--VGLVQWHPT-A 143 (472)
T ss_pred ccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeeccee--EEEEeeccc-c
Confidence 3344455556789999999999998 4578999999999999997543 345567778654 444555554 3
Q ss_pred cceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCC
Q 017296 76 LNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDD 155 (374)
Q Consensus 76 ~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (374)
.+.|+|+|.|.+|.+||+.+|+.. +.+. |. ..++.+.
T Consensus 144 ~NVLlsag~Dn~v~iWnv~tgeal----i~l~----hp-------------------d~i~S~s---------------- 180 (472)
T KOG0303|consen 144 PNVLLSAGSDNTVSIWNVGTGEAL----ITLD----HP-------------------DMVYSMS---------------- 180 (472)
T ss_pred hhhHhhccCCceEEEEeccCCcee----eecC----CC-------------------CeEEEEE----------------
Confidence 488999999999999999998531 1110 10 0000000
Q ss_pred CCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEE---ecCCc
Q 017296 156 VPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAG---YEDGS 232 (374)
Q Consensus 156 ~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---s~dg~ 232 (374)
+..++ . ++++...|+.|||||.++++.+.....+.... ..+. .|..+ +. .+-+| ..+.+
T Consensus 181 fn~dG-s-~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k------~~Ra------ifl~~---g~-i~tTGfsr~seRq 242 (472)
T KOG0303|consen 181 FNRDG-S-LLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAK------PARA------IFLAS---GK-IFTTGFSRMSERQ 242 (472)
T ss_pred eccCC-c-eeeeecccceeEEEcCCCCcEeeecccccCCC------ccee------EEecc---Cc-eeeeccccccccc
Confidence 11111 2 34566678999999999999776653321110 0010 12111 11 12223 45789
Q ss_pred EEEEeccCCCCceeeeecCcc-CeEEEEEecCCCce-EEEecCCeEEEEEcCCCC
Q 017296 233 ILVWDIRNPGIPLTAMKVHLE-PVLCLSIDESCNGG-ISGGADQKIVLYNLDHST 285 (374)
Q Consensus 233 i~iwdl~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~-~s~s~D~~i~lwd~~~~~ 285 (374)
+-+||..+-..++....-.+. .|.--.+|++-..+ +.|-.|+.||-|.+....
T Consensus 243 ~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 243 IALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred eeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 999998654444322222233 33322336654444 456679999999986543
No 176
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.60 E-value=3.1e-13 Score=124.10 Aligned_cols=273 Identities=15% Similarity=0.208 Sum_probs=171.5
Q ss_pred ceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCCCC
Q 017296 20 SVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLS 99 (374)
Q Consensus 20 ~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~ 99 (374)
.|..++|-|||..|+.+. |..+.++|...|..+.++++|.. .+.+++++. ++.+++||+.|+.|.+|...-..
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKD--tVycVAys~--dGkrFASG~aDK~VI~W~~klEG-- 86 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKD--TVYCVAYAK--DGKRFASGSADKSVIIWTSKLEG-- 86 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccc--eEEEEEEcc--CCceeccCCCceeEEEecccccc--
Confidence 899999999999877765 46799999999999999999864 478888877 77899999999999999975321
Q ss_pred CCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEec
Q 017296 100 SNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDL 179 (374)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~ 179 (374)
.++... .. ...|..+++-.. .+++++- +.--+|..
T Consensus 87 -----~LkYSH--~D-----------------~IQCMsFNP~~h--------------------~LasCsL-sdFglWS~ 121 (1081)
T KOG1538|consen 87 -----ILKYSH--ND-----------------AIQCMSFNPITH--------------------QLASCSL-SDFGLWSP 121 (1081)
T ss_pred -----eeeecc--CC-----------------eeeEeecCchHH--------------------Hhhhcch-hhccccCh
Confidence 111110 00 011111211100 0111111 12334543
Q ss_pred CCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccC-CCCceeeeecCccCeEEE
Q 017296 180 NTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN-PGIPLTAMKVHLEPVLCL 258 (374)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~-~~~~~~~~~~h~~~v~~~ 258 (374)
+.... .+. ....+ +... .. + .+..+++.|..||+|.+=+-.. +...+..-.|..++|.++
T Consensus 122 ~qK~V-~K~-----------kss~R--~~~C-sW-t---nDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi 182 (1081)
T KOG1538|consen 122 EQKSV-SKH-----------KSSSR--IICC-SW-T---NDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSI 182 (1081)
T ss_pred hhhhH-Hhh-----------hhhee--EEEe-ee-c---CCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEE
Confidence 32210 000 00011 1111 11 1 1234688899999999875321 112233334578899999
Q ss_pred EEecCCC-----ceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEE
Q 017296 259 SIDESCN-----GGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSAL 333 (374)
Q Consensus 259 ~~~~~~~-----~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~ 333 (374)
+++|... .++...-..++.++.+.+ ++. .++.. -.-.-.++++-|+|.|++.||.|+..++|. ++|-.+
T Consensus 183 ~~~p~sg~G~~di~aV~DW~qTLSFy~LsG---~~I-gk~r~-L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrL 256 (1081)
T KOG1538|consen 183 CWNPSSGEGRNDILAVADWGQTLSFYQLSG---KQI-GKDRA-LNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRL 256 (1081)
T ss_pred EecCCCCCCccceEEEEeccceeEEEEecc---eee-ccccc-CCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEE
Confidence 9976432 123333344555555432 111 11111 111245678889999999999999999995 478888
Q ss_pred EEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 334 AILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 334 ~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
.++......|++|+..|+++.++-|..||||--+++
T Consensus 257 GTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 257 GTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred eeccccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence 888777789999999999999999999999998876
No 177
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.59 E-value=1.7e-13 Score=115.91 Aligned_cols=264 Identities=17% Similarity=0.222 Sum_probs=158.5
Q ss_pred cCCCceeEEEEeC---C-CCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEE
Q 017296 16 GHRASVTDVCFHQ---T-KPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (374)
Q Consensus 16 gH~~~V~~l~~~~---~-~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvw 91 (374)
.|...-+-++|.= + ..+|+.|+.-|.|+|-|..++++...+.+|.. .+..+-+.|. ..++++|+|.|.+||+|
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~--sINeik~~p~-~~qlvls~SkD~svRlw 163 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGG--SINEIKFHPD-RPQLVLSASKDHSVRLW 163 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCc--cchhhhcCCC-CCcEEEEecCCceEEEE
Confidence 3666677777752 2 45789999999999999999998888888864 4777778774 34789999999999999
Q ss_pred ecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCC
Q 017296 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL 171 (374)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 171 (374)
++++..+.. .+.....|- .++..+ ++..++ . .+++++.|
T Consensus 164 nI~~~~Cv~----VfGG~egHr---------------------------deVLSv--------D~~~~g-d-~i~ScGmD 202 (385)
T KOG1034|consen 164 NIQTDVCVA----VFGGVEGHR---------------------------DEVLSV--------DFSLDG-D-RIASCGMD 202 (385)
T ss_pred eccCCeEEE----Eeccccccc---------------------------CcEEEE--------EEcCCC-C-eeeccCCc
Confidence 999864311 000000000 001110 121222 2 46677789
Q ss_pred CeEEEEecCCCceeEEeccC----ccCCCCCcCCCCCcceeEEEee-ecCCCCC--------ceEEEEEecCCcEEEEec
Q 017296 172 SEVEIWDLNTAERCTRLHQN----SCGGSPNFSSKGRGMCMAVQAY-LPSKSQG--------FVNVLAGYEDGSILVWDI 238 (374)
Q Consensus 172 ~~i~vWd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------~~~~~~gs~dg~i~iwdl 238 (374)
..+++|++...+.-..+... .......|......+. .| ..+.+.+ ...+++=|-++.|..|..
T Consensus 203 hslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp----~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~p 278 (385)
T KOG1034|consen 203 HSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFP----DFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKP 278 (385)
T ss_pred ceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccc----cccccccccchHHHHHHHhhheeecccCceEEEEec
Confidence 99999999854321111100 0000000100000000 00 0000000 124778788889999987
Q ss_pred cCCCC-------------ceeeeecCccCeEEEEE--ecCCCceEEEecCCeEEEEEcCCCCC-eEEEEEeeecCCCCeE
Q 017296 239 RNPGI-------------PLTAMKVHLEPVLCLSI--DESCNGGISGGADQKIVLYNLDHSTG-SCVIKKEINLERPGIS 302 (374)
Q Consensus 239 ~~~~~-------------~~~~~~~h~~~v~~~~~--~~~~~~~~s~s~D~~i~lwd~~~~~~-~~~~~~~~~~~~~~v~ 302 (374)
-+-.. .+..+....-.|..+.| |+....++.|.+.|.+.+||++.... ++.. .........|+
T Consensus 279 gkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~tt-l~~s~~~~tVR 357 (385)
T KOG1034|consen 279 GKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTT-LTHSKSGSTVR 357 (385)
T ss_pred chhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCce-EEeccccceee
Confidence 11110 12223333334555544 78788889999999999999976443 2211 11112234688
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEcc
Q 017296 303 GTSIRPDSKIAATAGWDRRVRIYNYR 328 (374)
Q Consensus 303 ~~~~sp~~~~l~s~~~dg~v~iwd~~ 328 (374)
..+||.|+.+|+.-+.|++|..||..
T Consensus 358 Q~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 358 QTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred eeeecccCcEEEEEeCCCcEEEEEee
Confidence 99999999999999999999999974
No 178
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=4.9e-14 Score=122.90 Aligned_cols=70 Identities=29% Similarity=0.391 Sum_probs=63.4
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEe-cccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 300 GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAIL-KYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 300 ~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~-~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
.++++++|+||+++|.|+.||.|.|++..+.+.++-. +.|...|+.+.|+||.+++++.|.|....+-.+
T Consensus 283 siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 283 SISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKL 353 (398)
T ss_pred cceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEE
Confidence 6899999999999999999999999999988877644 579999999999999999999999999888765
No 179
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=7.5e-14 Score=134.05 Aligned_cols=256 Identities=17% Similarity=0.245 Sum_probs=149.6
Q ss_pred CCceeEEEEeC--CCCEEEEecCCCcEEEEeCccc--c--eeee----eeeeeceeeeEEeccCCccccceeeeccccCe
Q 017296 18 RASVTDVCFHQ--TKPILFAGTTGGELRIWDTVQH--R--TVSS----SWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (374)
Q Consensus 18 ~~~V~~l~~~~--~~~~l~s~s~D~~v~vWd~~~~--~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~ 87 (374)
...|+.+++-+ |..+|++|+.||.||||+-... + .+.+ +.++........+.++......+|+++|.-..
T Consensus 1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~ 1188 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRS 1188 (1387)
T ss_pred CCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeE
Confidence 36788899854 4578999999999999985322 1 1211 11111111111122222222236777776889
Q ss_pred EEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEc
Q 017296 88 VKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVA 167 (374)
Q Consensus 88 vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (374)
||+||...-.+.. ++.. .. ....... ...... .-++++
T Consensus 1189 IRIWDa~~E~~~~---------diP~-----~s--~t~vTaL-------------------------S~~~~~-gn~i~A 1226 (1387)
T KOG1517|consen 1189 IRIWDAHKEQVVA---------DIPY-----GS--STLVTAL-------------------------SADLVH-GNIIAA 1226 (1387)
T ss_pred EEEEecccceeEe---------eccc-----CC--Cccceee-------------------------cccccC-CceEEE
Confidence 9999997532110 0000 00 0000000 000011 236788
Q ss_pred ccCCCeEEEEecCCCce--eEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCC-CCc
Q 017296 168 GEQLSEVEIWDLNTAER--CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP-GIP 244 (374)
Q Consensus 168 ~~~d~~i~vWd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~-~~~ 244 (374)
|-.||.|++||.+.... ...... .+......+-..++ ..|...+++|+.||.|++||+|.+ ...
T Consensus 1227 GfaDGsvRvyD~R~a~~ds~v~~~R-------~h~~~~~Iv~~slq------~~G~~elvSgs~~G~I~~~DlR~~~~e~ 1293 (1387)
T KOG1517|consen 1227 GFADGSVRVYDRRMAPPDSLVCVYR-------EHNDVEPIVHLSLQ------RQGLGELVSGSQDGDIQLLDLRMSSKET 1293 (1387)
T ss_pred eecCCceEEeecccCCccccceeec-------ccCCcccceeEEee------cCCCcceeeeccCCeEEEEecccCcccc
Confidence 99999999999887542 222221 12222222222222 124446999999999999999973 222
Q ss_pred eeeeecCc---cCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEE---eeecCCCCeEEEEECCCCCEEEEEeC
Q 017296 245 LTAMKVHL---EPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKK---EINLERPGISGTSIRPDSKIAATAGW 318 (374)
Q Consensus 245 ~~~~~~h~---~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~---~~~~~~~~v~~~~~sp~~~~l~s~~~ 318 (374)
..+...|- ..++++.+++....+|+|+. +.|++|++.+..- ..++. .+......+.+++|||-.-++|+|..
T Consensus 1294 ~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l-~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~ 1371 (1387)
T KOG1517|consen 1294 FLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQL-NIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSA 1371 (1387)
T ss_pred cceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhh-cccccCcccccCcCCCcceeeecchhHhhhhccC
Confidence 22233332 35999999998888899998 9999999865321 11111 11222245789999999888999999
Q ss_pred CCeEEEEEccCC
Q 017296 319 DRRVRIYNYRKG 330 (374)
Q Consensus 319 dg~v~iwd~~~~ 330 (374)
|.+|.||....+
T Consensus 1372 Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1372 DSTVSIYSCEKP 1383 (1387)
T ss_pred CceEEEeecCCc
Confidence 999999977554
No 180
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=5.9e-13 Score=108.32 Aligned_cols=139 Identities=17% Similarity=0.228 Sum_probs=97.5
Q ss_pred EEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeee--c---C-
Q 017296 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEIN--L---E- 297 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~--~---~- 297 (374)
++.+..|+.+.-||+++ +.....+++|++.|.++.--.....+++|+.||++|+||+++.....++....+ . +
T Consensus 129 i~~AgGD~~~y~~dlE~-G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~ 207 (325)
T KOG0649|consen 129 ILFAGGDGVIYQVDLED-GRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDW 207 (325)
T ss_pred EEEecCCeEEEEEEecC-CEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCccc
Confidence 55566899999999987 445667999999999998844445689999999999999975433222211100 0 0
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 298 RPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 298 ~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
...|.+ +.-+..+|++|+ -....+|+++..++..++. -++.|..+.| +.+.+.++++...|.-|.+
T Consensus 208 g~wiga--la~~edWlvCGg-Gp~lslwhLrsse~t~vfp-ipa~v~~v~F--~~d~vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 208 GKWIGA--LAVNEDWLVCGG-GPKLSLWHLRSSESTCVFP-IPARVHLVDF--VDDCVLIGGEGNHVQSYTL 273 (325)
T ss_pred CceeEE--EeccCceEEecC-CCceeEEeccCCCceEEEe-cccceeEeee--ecceEEEeccccceeeeee
Confidence 112334 444556888776 5578899999988877665 4557777888 4456777887777877765
No 181
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=6.4e-14 Score=127.00 Aligned_cols=134 Identities=18% Similarity=0.277 Sum_probs=103.7
Q ss_pred ecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEEC
Q 017296 228 YEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIR 307 (374)
Q Consensus 228 s~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~s 307 (374)
+....|.|+++.... ....|+.-...+.++.|+|...++..++ ...|++||+..+ .+.+.+......+.+++++
T Consensus 543 ~~~~~VliHQLSK~~-sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kq----elvKkL~tg~kwiS~msih 616 (733)
T KOG0650|consen 543 SGNKSVLIHQLSKRK-SQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQ----ELVKKLLTGSKWISSMSIH 616 (733)
T ss_pred CCcceEEEEeccccc-ccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHH----HHHHHHhcCCeeeeeeeec
Confidence 445779999996532 2234444567899999999887766554 567999998532 1112222223458899999
Q ss_pred CCCCEEEEEeCCCeEEEEEccC-CeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEe
Q 017296 308 PDSKIAATAGWDRRVRIYNYRK-GSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALW 367 (374)
Q Consensus 308 p~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W 367 (374)
|.|--|+.|+.|+++..||+.- .+++++++.|+..|.+|+|++.-.+++|||.|+++.++
T Consensus 617 p~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 617 PNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred CCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence 9999999999999999999964 46788999999999999999999999999999999987
No 182
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.56 E-value=2.1e-13 Score=117.91 Aligned_cols=143 Identities=21% Similarity=0.381 Sum_probs=116.2
Q ss_pred EEEEEecCCcEEEEeccCCC------CceeeeecCccCeEEEEEecC-CCceEEEecCCeEEEEEcCCCCCeEEEEEeee
Q 017296 223 NVLAGYEDGSILVWDIRNPG------IPLTAMKVHLEPVLCLSIDES-CNGGISGGADQKIVLYNLDHSTGSCVIKKEIN 295 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~------~~~~~~~~h~~~v~~~~~~~~-~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~ 295 (374)
.+++||+|.+|.+|++..+. .++..+.+|...|--+.++|. .+.|+++|.|++|.+||+.+.. -++. +.
T Consensus 96 vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tge--ali~--l~ 171 (472)
T KOG0303|consen 96 VIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGE--ALIT--LD 171 (472)
T ss_pred eeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCc--eeee--cC
Confidence 58999999999999986542 356678999999999999874 3467899999999999997543 2222 33
Q ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCC-ceEEEEEeCCCCEEEEE---eCCCcEEEecCC
Q 017296 296 LERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHA-TCNAVSFSSDCKLMASA---SEDSTVALWELY 370 (374)
Q Consensus 296 ~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~-~v~~v~~sp~~~~las~---s~D~~v~~W~~~ 370 (374)
|.+-|++++|+-||.++++++.|++|||||.++++.+..-.+|++ .-..+.|-.+|..+-|| ..+..+-||+-+
T Consensus 172 -hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~ 249 (472)
T KOG0303|consen 172 -HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPN 249 (472)
T ss_pred -CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcc
Confidence 777899999999999999999999999999999999988888885 45667888899844443 367889999753
No 183
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.54 E-value=2.5e-13 Score=113.15 Aligned_cols=150 Identities=23% Similarity=0.284 Sum_probs=115.6
Q ss_pred eEEEEEecCCcEEEEeccCC--CCceeeeecCccCeEEEEEec-CCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCC
Q 017296 222 VNVLAGYEDGSILVWDIRNP--GIPLTAMKVHLEPVLCLSIDE-SCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLER 298 (374)
Q Consensus 222 ~~~~~gs~dg~i~iwdl~~~--~~~~~~~~~h~~~v~~~~~~~-~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~ 298 (374)
.++.+.|-|-+..+||++.. +..-+++..|...|..++|.. .-..|++.|.||++|++|++...-. ....+-....
T Consensus 164 ~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS-TIIYE~p~~~ 242 (364)
T KOG0290|consen 164 NLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS-TIIYEDPSPS 242 (364)
T ss_pred ceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc-eEEecCCCCC
Confidence 36888999999999999873 223566788999999999965 3356899999999999999754322 2233322223
Q ss_pred CCeEEEEECC-CCCEEEEEeCC-CeEEEEEccCC-eEEEEecccCCceEEEEEeCCC-CEEEEEeCCCcEEEecCCCC
Q 017296 299 PGISGTSIRP-DSKIAATAGWD-RRVRIYNYRKG-SALAILKYHHATCNAVSFSSDC-KLMASASEDSTVALWELYPP 372 (374)
Q Consensus 299 ~~v~~~~~sp-~~~~l~s~~~d-g~v~iwd~~~~-~~~~~~~~h~~~v~~v~~sp~~-~~las~s~D~~v~~W~~~~~ 372 (374)
..+..+++++ |.++||+-..| ..|.|-|++.+ .++..|++|.+.|+.++|.|-. ..|.|++.|..+-+||+..+
T Consensus 243 ~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 243 TPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred CcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence 3466777876 56678765554 67999999764 5688999999999999999965 49999999999999999654
No 184
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=1.3e-11 Score=116.88 Aligned_cols=302 Identities=16% Similarity=0.256 Sum_probs=174.5
Q ss_pred cCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcc--cceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEec
Q 017296 16 GHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQ--HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDI 93 (374)
Q Consensus 16 gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~ 93 (374)
-|+..++|.++||.++++++|..||.|.||.-.. +........|-+...+.+++|++ +|.+|+|||..+.+-+|.+
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~--~G~~LlSGG~E~VLv~Wq~ 280 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSS--DGAYLLSGGREGVLVLWQL 280 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEec--CCceEeecccceEEEEEee
Confidence 5888899999999999999999999999997533 33222222344334688899987 6789999999999999999
Q ss_pred CCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCe
Q 017296 94 ENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSE 173 (374)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 173 (374)
++++..-.|.+. ..+-.+.+ .+++.++++. ..|+.
T Consensus 281 ~T~~kqfLPRLg---s~I~~i~v-----------------------------------------S~ds~~~sl~-~~DNq 315 (792)
T KOG1963|consen 281 ETGKKQFLPRLG---SPILHIVV-----------------------------------------SPDSDLYSLV-LEDNQ 315 (792)
T ss_pred cCCCcccccccC---CeeEEEEE-----------------------------------------cCCCCeEEEE-ecCce
Confidence 987532112110 00000100 0111222222 23566
Q ss_pred EEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeee----
Q 017296 174 VEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK---- 249 (374)
Q Consensus 174 i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~---- 249 (374)
|.+-.+.+-+....+...... .+......+.+...+ .+.| ..+ .++-....|.|++||+-+... +..+.
T Consensus 316 I~li~~~dl~~k~tIsgi~~~-~~~~k~~~~~l~t~~-~idp--r~~--~~vln~~~g~vQ~ydl~td~~-i~~~~v~~~ 388 (792)
T KOG1963|consen 316 IHLIKASDLEIKSTISGIKPP-TPSTKTRPQSLTTGV-SIDP--RTN--SLVLNGHPGHVQFYDLYTDST-IYKLQVCDE 388 (792)
T ss_pred EEEEeccchhhhhhccCccCC-CccccccccccceeE-EEcC--CCC--ceeecCCCceEEEEeccccce-eeeEEEEee
Confidence 666654433322222211100 000001111111111 1111 111 245566789999999965332 22221
Q ss_pred -c------CccCeEEEEEecCCCceEEE--------ecC--CeEEEEEcCCCCCeEEEEEee-ecCCCCeEEEEECCC-C
Q 017296 250 -V------HLEPVLCLSIDESCNGGISG--------GAD--QKIVLYNLDHSTGSCVIKKEI-NLERPGISGTSIRPD-S 310 (374)
Q Consensus 250 -~------h~~~v~~~~~~~~~~~~~s~--------s~D--~~i~lwd~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~-~ 310 (374)
. +...++.++.+..+...+|. ..| ..+|+|-.+..+....+...+ .-|+..+..++|.+. .
T Consensus 389 n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~r 468 (792)
T KOG1963|consen 389 NYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTR 468 (792)
T ss_pred cccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcc
Confidence 1 22345555555555555553 233 478889877655445444443 335555556666543 3
Q ss_pred C-EEEEEeCCCeEEEEEccCCe----------EEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 311 K-IAATAGWDRRVRIYNYRKGS----------ALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 311 ~-~l~s~~~dg~v~iwd~~~~~----------~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
. ..++++.||.++||-+.+.+ +...-..|...+.+.+|+.||..|| .|.|.+|.+||...+
T Consensus 469 s~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla-~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 469 SVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLA-VSFDDTITIWDYDTK 540 (792)
T ss_pred cceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEE-EecCCEEEEecCCCh
Confidence 3 68899999999999884322 1122224778899999999996555 577999999998764
No 185
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.54 E-value=3.5e-11 Score=103.67 Aligned_cols=283 Identities=17% Similarity=0.272 Sum_probs=164.3
Q ss_pred CCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeecccc--CeEEEEecC
Q 017296 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD--GTVKCWDIE 94 (374)
Q Consensus 17 H~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D--~~vrvwd~~ 94 (374)
-...++.+.|+.+...|-.|+.||. ++++...-...... ......++-.-|+. ..++-.+.+ +.+++.+..
T Consensus 4 ~~~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k~~~~--~~~~~~IvEmLFSS----SLvaiV~~~qpr~Lkv~~~K 76 (391)
T KOG2110|consen 4 KKPTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEKCFSK--DTEGVSIVEMLFSS----SLVAIVSIKQPRKLKVVHFK 76 (391)
T ss_pred CCcceeeeeeccceeEEEccCCCce-eEEecCchHHhhcc--cCCCeEEEEeeccc----ceeEEEecCCCceEEEEEcc
Confidence 4566788889999988999998876 56665443221111 11222344444554 344433333 357777776
Q ss_pred CCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeE
Q 017296 95 NGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEV 174 (374)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 174 (374)
.+.. +|.+.+.. .++. +.-..+++++.- . ..|
T Consensus 77 k~~~--------------ICe~~fpt---------------------~IL~----------VrmNr~RLvV~L--e-e~I 108 (391)
T KOG2110|consen 77 KKTT--------------ICEIFFPT---------------------SILA----------VRMNRKRLVVCL--E-ESI 108 (391)
T ss_pred cCce--------------EEEEecCC---------------------ceEE----------EEEccceEEEEE--c-ccE
Confidence 4321 23221111 0000 000112322222 1 249
Q ss_pred EEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEE-E-ecCCcEEEEeccCCCCceeeeecCc
Q 017296 175 EIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA-G-YEDGSILVWDIRNPGIPLTAMKVHL 252 (374)
Q Consensus 175 ~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g-s~dg~i~iwdl~~~~~~~~~~~~h~ 252 (374)
.|+|+++=+.+-++... .+...++| ++.+..... +++- + ...|.|.+||..+ -.+...+..|.
T Consensus 109 yIydI~~MklLhTI~t~--------~~n~~gl~----AlS~n~~n~--ylAyp~s~t~GdV~l~d~~n-l~~v~~I~aH~ 173 (391)
T KOG2110|consen 109 YIYDIKDMKLLHTIETT--------PPNPKGLC----ALSPNNANC--YLAYPGSTTSGDVVLFDTIN-LQPVNTINAHK 173 (391)
T ss_pred EEEecccceeehhhhcc--------CCCccceE----eeccCCCCc--eEEecCCCCCceEEEEEccc-ceeeeEEEecC
Confidence 99999887766555321 01122222 233322221 1221 2 3359999999975 45677788999
Q ss_pred cCeEEEEEecCCCceEEEecCCe-EEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCe
Q 017296 253 EPVLCLSIDESCNGGISGGADQK-IVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGS 331 (374)
Q Consensus 253 ~~v~~~~~~~~~~~~~s~s~D~~-i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~ 331 (374)
.++.+++|+++|..+||+|..|+ ||++.+..++....++. ...--.|.+++|+|++++|++.+..++|++|.+.+-.
T Consensus 174 ~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRR--G~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 174 GPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRR--GTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred CceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeC--CceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 99999999999999999999985 68898854432222221 1112358899999999999999999999999875310
Q ss_pred -------------------------------------EEEEecccCCce-EEEEEe--CCCCEEEEEeCCCcEEEecCCC
Q 017296 332 -------------------------------------ALAILKYHHATC-NAVSFS--SDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 332 -------------------------------------~~~~~~~h~~~v-~~v~~s--p~~~~las~s~D~~v~~W~~~~ 371 (374)
...+.+...... ....+. ++...+--++.||.+..+.+.+
T Consensus 252 ~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~ 331 (391)
T KOG2110|consen 252 NNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPP 331 (391)
T ss_pred cCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCC
Confidence 001111111111 223444 3666777889999999998854
No 186
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.54 E-value=4e-11 Score=108.97 Aligned_cols=263 Identities=12% Similarity=0.143 Sum_probs=143.5
Q ss_pred CeEEeecCCCceeEEEEeCCCCEEEEe-cCCCcEEEEeCcc-cceeeeeeeeeceeeeEEeccCCccccceeeecc-ccC
Q 017296 10 PVAVLRGHRASVTDVCFHQTKPILFAG-TTGGELRIWDTVQ-HRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQG-RDG 86 (374)
Q Consensus 10 ~~~~l~gH~~~V~~l~~~~~~~~l~s~-s~D~~v~vWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~D~ 86 (374)
.+.++. +.+....|+++|++++|+.+ ..++.|.+|+... ++ +..............+++++ +++.+++++ .++
T Consensus 27 ~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~-l~~~~~~~~~~~p~~i~~~~--~g~~l~v~~~~~~ 102 (330)
T PRK11028 27 LLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGA-LTFAAESPLPGSPTHISTDH--QGRFLFSASYNAN 102 (330)
T ss_pred eeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCc-eEEeeeecCCCCceEEEECC--CCCEEEEEEcCCC
Confidence 444444 34567789999999988765 4578999999863 32 21111111111223455665 566666654 589
Q ss_pred eEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEE
Q 017296 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (374)
Q Consensus 87 ~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (374)
.|.+|++++....... +... . ....... ..+ .++++++++
T Consensus 103 ~v~v~~~~~~g~~~~~---~~~~---------~---------~~~~~~~------------------~~~-~p~g~~l~v 142 (330)
T PRK11028 103 CVSVSPLDKDGIPVAP---IQII---------E---------GLEGCHS------------------ANI-DPDNRTLWV 142 (330)
T ss_pred eEEEEEECCCCCCCCc---eeec---------c---------CCCcccE------------------eEe-CCCCCEEEE
Confidence 9999999743211100 0000 0 0000000 001 123456677
Q ss_pred cccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEec-CCcEEEEeccCCC-C-
Q 017296 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE-DGSILVWDIRNPG-I- 243 (374)
Q Consensus 167 ~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~-dg~i~iwdl~~~~-~- 243 (374)
+...++.|.+||+.+...+............+.. .+. + .+.++ +. .++++.. +++|.+||+.... .
T Consensus 143 ~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~--p~~--~---~~~pd---g~-~lyv~~~~~~~v~v~~~~~~~~~~ 211 (330)
T PRK11028 143 PCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAG--PRH--M---VFHPN---QQ-YAYCVNELNSSVDVWQLKDPHGEI 211 (330)
T ss_pred eeCCCCEEEEEEECCCCcccccCCCceecCCCCC--Cce--E---EECCC---CC-EEEEEecCCCEEEEEEEeCCCCCE
Confidence 7777899999999874322111000000000000 111 1 23332 32 4555544 8999999996321 1
Q ss_pred -ceeeeecC------ccCeEEEEEecCCCceEEEe-cCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEE
Q 017296 244 -PLTAMKVH------LEPVLCLSIDESCNGGISGG-ADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAAT 315 (374)
Q Consensus 244 -~~~~~~~h------~~~v~~~~~~~~~~~~~s~s-~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s 315 (374)
..+.+..+ ......+.++|++..++++. .+++|.+|+++.......+....... .....++|+|++++|++
T Consensus 212 ~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~dg~~l~v 290 (330)
T PRK11028 212 ECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDHSGKYLIA 290 (330)
T ss_pred EEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEECCCCCEEEE
Confidence 12222211 11233578899998887764 57899999997554433333322221 23457899999999987
Q ss_pred EeC-CCeEEEEEcc
Q 017296 316 AGW-DRRVRIYNYR 328 (374)
Q Consensus 316 ~~~-dg~v~iwd~~ 328 (374)
+.. +++|.+|++.
T Consensus 291 a~~~~~~v~v~~~~ 304 (330)
T PRK11028 291 AGQKSHHISVYEID 304 (330)
T ss_pred EEccCCcEEEEEEc
Confidence 775 8999999874
No 187
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.52 E-value=8.4e-13 Score=121.30 Aligned_cols=254 Identities=16% Similarity=0.235 Sum_probs=157.7
Q ss_pred CCCCCCCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeec
Q 017296 3 KRPPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ 82 (374)
Q Consensus 3 ~~~~~~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 82 (374)
+.|+......+|+||++-|+|++|+.+|++++||+.|+.|.+|+...--.+ .. .|. ..+.|+.|.|- .++|+|+
T Consensus 38 yD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-kY-SH~--D~IQCMsFNP~--~h~LasC 111 (1081)
T KOG1538|consen 38 YDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-KY-SHN--DAIQCMSFNPI--THQLASC 111 (1081)
T ss_pred EeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-ee-ccC--CeeeEeecCch--HHHhhhc
Confidence 357788899999999999999999999999999999999999996432222 21 243 34778888773 3578887
Q ss_pred cccCeEEEEecCCCCCCCCCceeeeec-ceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCC
Q 017296 83 GRDGTVKCWDIENGGLSSNPSLTIKTN-SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGP 161 (374)
Q Consensus 83 ~~D~~vrvwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (374)
+-. .+-+|..+.-.+ .+.. +...+ .| . . ..+
T Consensus 112 sLs-dFglWS~~qK~V-------~K~kss~R~~-------------------~C-s------------------W-tnD- 143 (1081)
T KOG1538|consen 112 SLS-DFGLWSPEQKSV-------SKHKSSSRII-------------------CC-S------------------W-TND- 143 (1081)
T ss_pred chh-hccccChhhhhH-------HhhhhheeEE-------------------Ee-e------------------e-cCC-
Confidence 753 356787653211 0000 00000 00 0 0 111
Q ss_pred ceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCce-EEEEEecCCcEEEEeccC
Q 017296 162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFV-NVLAGYEDGSILVWDIRN 240 (374)
Q Consensus 162 ~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~gs~dg~i~iwdl~~ 240 (374)
+.+++-|..||+|.+-+.. ++.-..+..+...+++.+ .+ .+.|....|.. .++......++-+|.+.
T Consensus 144 GqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiw---------si-~~~p~sg~G~~di~aV~DW~qTLSFy~Ls- 211 (1081)
T KOG1538|consen 144 GQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIW---------SI-CWNPSSGEGRNDILAVADWGQTLSFYQLS- 211 (1081)
T ss_pred CcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCce---------EE-EecCCCCCCccceEEEEeccceeEEEEec-
Confidence 2245567778898887543 222223333222222211 11 23333333322 35556777777777774
Q ss_pred CCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCC
Q 017296 241 PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDR 320 (374)
Q Consensus 241 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg 320 (374)
++.+..-+.-.-...|++..+++.+++.|+.|+.++++.-++ ...........+|+.++.+|++++++.|+.||
T Consensus 212 -G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~G-----vrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDG 285 (1081)
T KOG1538|consen 212 -GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDG-----VRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDG 285 (1081)
T ss_pred -ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEeecC-----eEEeeccccceeEEEEEEccCCceEEEEEccC
Confidence 221111111122345777788888999999999999995432 22334444557899999999999999999999
Q ss_pred eEEEEEcc
Q 017296 321 RVRIYNYR 328 (374)
Q Consensus 321 ~v~iwd~~ 328 (374)
||.-|++.
T Consensus 286 TiACyNl~ 293 (1081)
T KOG1538|consen 286 TIACYNLI 293 (1081)
T ss_pred eeehhhhH
Confidence 99998874
No 188
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=4.8e-13 Score=112.64 Aligned_cols=148 Identities=13% Similarity=0.209 Sum_probs=117.7
Q ss_pred eEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEE---------
Q 017296 222 VNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKK--------- 292 (374)
Q Consensus 222 ~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~--------- 292 (374)
.++++|+.||.|.|||+.+.+ +-..+.+|..||.+++++++++.|+|+|.|..|++||+..++.....+.
T Consensus 36 ~~lAvGc~nG~vvI~D~~T~~-iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~ 114 (405)
T KOG1273|consen 36 DYLAVGCANGRVVIYDFDTFR-IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQW 114 (405)
T ss_pred ceeeeeccCCcEEEEEccccc-hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeee
Confidence 468999999999999997643 4556889999999999999999999999999999999965442111110
Q ss_pred -----------eee-------c----C-------C----CCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEeccc
Q 017296 293 -----------EIN-------L----E-------R----PGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYH 339 (374)
Q Consensus 293 -----------~~~-------~----~-------~----~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h 339 (374)
.++ . | . .......|.+-|+||++|...|.+.++|..+.+++..++--
T Consensus 115 hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rit 194 (405)
T KOG1273|consen 115 HPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRIT 194 (405)
T ss_pred ccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeec
Confidence 000 0 0 0 00122347888999999999999999999999988877655
Q ss_pred C-CceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 340 H-ATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 340 ~-~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
. ..|..+.|+-.|+.|+.-+.|.+||.+++.
T Consensus 195 s~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 195 SVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred hheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence 5 789999999999999999999999999876
No 189
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.52 E-value=1.2e-13 Score=119.89 Aligned_cols=147 Identities=22% Similarity=0.312 Sum_probs=123.7
Q ss_pred EEEEEecCCcEEEEeccCCC--C------ceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCC------CC---
Q 017296 223 NVLAGYEDGSILVWDIRNPG--I------PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH------ST--- 285 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~--~------~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~------~~--- 285 (374)
.+++|+.|..|++|-+.... . .+..+..|...|+++.|+|++..++||+.+|.+.+|.... .+
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~ 107 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEAD 107 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhh
Confidence 58899999999999885321 1 2345678999999999999999999999999999998651 11
Q ss_pred ---CeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCC
Q 017296 286 ---GSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDS 362 (374)
Q Consensus 286 ---~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~ 362 (374)
..+........|+..+..++|+|++.++++++.|.++++||+..|.....+..|+..|..++|.|-++++++=|.|.
T Consensus 108 ~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr 187 (434)
T KOG1009|consen 108 LNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDR 187 (434)
T ss_pred hCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCc
Confidence 12344455566888899999999999999999999999999999999999999999999999999999999988888
Q ss_pred cEEEecC
Q 017296 363 TVALWEL 369 (374)
Q Consensus 363 ~v~~W~~ 369 (374)
..+..++
T Consensus 188 ~~~~~~~ 194 (434)
T KOG1009|consen 188 HPEGFSA 194 (434)
T ss_pred ccceeee
Confidence 6666544
No 190
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.50 E-value=1.6e-12 Score=108.01 Aligned_cols=131 Identities=18% Similarity=0.380 Sum_probs=96.8
Q ss_pred CcEEEEeccCCCCceeeeec-CccCeEEEEEecCCCceEE--EecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEEC
Q 017296 231 GSILVWDIRNPGIPLTAMKV-HLEPVLCLSIDESCNGGIS--GGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIR 307 (374)
Q Consensus 231 g~i~iwdl~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~s--~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~s 307 (374)
|...+|.++....+...+.- ...+|..++++|++..++. |..++.|.+||++. ... .. .+...+..+.|+
T Consensus 37 ~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~---~~i--~~--~~~~~~n~i~ws 109 (194)
T PF08662_consen 37 GEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG---KKI--FS--FGTQPRNTISWS 109 (194)
T ss_pred eeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcc---cEe--Ee--ecCCCceEEEEC
Confidence 34566666544445544443 3457999999999988754 44678999999962 111 12 233457789999
Q ss_pred CCCCEEEEEeCC---CeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEe------CCCcEEEecCC
Q 017296 308 PDSKIAATAGWD---RRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASAS------EDSTVALWELY 370 (374)
Q Consensus 308 p~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s------~D~~v~~W~~~ 370 (374)
|+|++|+.|+.+ |.+.+||.++.+.+.+.. |. .+..++|+|||++|++++ .|+.++||++.
T Consensus 110 P~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 110 PDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred CCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 999999988754 679999999888887764 44 478999999999999876 48999999874
No 191
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=1.8e-11 Score=116.01 Aligned_cols=305 Identities=17% Similarity=0.197 Sum_probs=176.9
Q ss_pred eecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCcccc-ceeeeccccCeEEEEe
Q 017296 14 LRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGL-NKVISQGRDGTVKCWD 92 (374)
Q Consensus 14 l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~D~~vrvwd 92 (374)
+-|-...=..-.|++|++.++-.. +..|+|+-..++.++..+..|... +..+.+.+.... ..+++.+.||+|++||
T Consensus 12 lgg~n~~~~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~--l~s~~~~~~~~~~~~~~~~sl~G~I~vwd 88 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAP--LTSVIVLPSSENANYLIVCSLDGTIRVWD 88 (792)
T ss_pred eccccceecccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCc--cceeeecCCCccceEEEEEecCccEEEec
Confidence 444443334557899999888755 579999999999999988877654 555555554332 5678999999999999
Q ss_pred cCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcc-cccccCceeecCCCCCCCCCCCCCCCceEEEcccCC
Q 017296 93 IENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDC-YEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL 171 (374)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 171 (374)
...+.+.. ......+...+... +.. +...... ...+..... ...+...-
T Consensus 89 ~~~~~Llk-----t~~~~~~v~~~~~~--~~~----a~~s~~~~~s~~~~~~~-------------------~~~s~~~~ 138 (792)
T KOG1963|consen 89 WSDGELLK-----TFDNNLPVHALVYK--PAQ----ADISANVYVSVEDYSIL-------------------TTFSKKLS 138 (792)
T ss_pred CCCcEEEE-----EEecCCceeEEEec--hhH----hCccceeEeecccceee-------------------eecccccc
Confidence 98775321 11111111111110 000 0000000 000000000 00000000
Q ss_pred CeEEEEecCCCc--eeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCC---cee
Q 017296 172 SEVEIWDLNTAE--RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI---PLT 246 (374)
Q Consensus 172 ~~i~vWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~---~~~ 246 (374)
+.++=..+++.. ....+.+. ... .++ .+.+ .+ .+...--+..+.+|+..+... ...
T Consensus 139 ~q~~~~~~~t~~~~~~d~~~~~----------~~~-~~I---~~~~---~g--e~~~i~~~~~~~~~~v~~~~~~~~~~~ 199 (792)
T KOG1963|consen 139 KQSSRFVLATFDSAKGDFLKEH----------QEP-KSI---VDNN---SG--EFKGIVHMCKIHIYFVPKHTKHTSSRD 199 (792)
T ss_pred cceeeeEeeeccccchhhhhhh----------cCC-ccE---EEcC---Cc--eEEEEEEeeeEEEEEecccceeeccch
Confidence 111111111110 00000000 000 000 0110 11 233333456688888765221 111
Q ss_pred eeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 017296 247 AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYN 326 (374)
Q Consensus 247 ~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd 326 (374)
.-..|+-+++|.+++|.+.++++|..||.|.+|.--.....-.....++.|...|.+++|++||.+|+|||..+-..+|.
T Consensus 200 ~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq 279 (792)
T KOG1963|consen 200 ITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQ 279 (792)
T ss_pred hhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEe
Confidence 12347778999999999999999999999999963221111111123567777899999999999999999999999999
Q ss_pred ccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCC
Q 017296 327 YRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 327 ~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~ 371 (374)
+.++++. -|+.-.+.|..+.+|||+.+.+..-+|+.|.+-...+
T Consensus 280 ~~T~~kq-fLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~d 323 (792)
T KOG1963|consen 280 LETGKKQ-FLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASD 323 (792)
T ss_pred ecCCCcc-cccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccc
Confidence 9998833 3555667999999999999998888899998876543
No 192
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=1.7e-12 Score=109.12 Aligned_cols=124 Identities=19% Similarity=0.253 Sum_probs=105.4
Q ss_pred ecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEEC-C-CCCEEEEEeCCCeEEEEE
Q 017296 249 KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIR-P-DSKIAATAGWDRRVRIYN 326 (374)
Q Consensus 249 ~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~s-p-~~~~l~s~~~dg~v~iwd 326 (374)
.+|.+-|.++.||.-|+..+++|.|+++++||.+..++........+.|...|..+.+- | -|+.+|+.+.|++++||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 46889999999999999999999999999999988888888888889999999999885 4 588999999999999996
Q ss_pred ccC------C---eEEEEecccCCceEEEEEeCC--CCEEEEEeCCCcEEEecCCCC
Q 017296 327 YRK------G---SALAILKYHHATCNAVSFSSD--CKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 327 ~~~------~---~~~~~~~~h~~~v~~v~~sp~--~~~las~s~D~~v~~W~~~~~ 372 (374)
-.. + ....++......|..|.|.|. |-.||+++.||++||++.-+|
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp 146 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDP 146 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCc
Confidence 521 1 123456666789999999995 558999999999999987544
No 193
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=2e-12 Score=105.26 Aligned_cols=147 Identities=19% Similarity=0.256 Sum_probs=112.2
Q ss_pred eEEEEEecCCcEEEEeccCC---------CCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCe----E
Q 017296 222 VNVLAGYEDGSILVWDIRNP---------GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGS----C 288 (374)
Q Consensus 222 ~~~~~gs~dg~i~iwdl~~~---------~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~----~ 288 (374)
..+++|+.+|+|.++.+.+- ..++...++|..|+..+.|..+ .++++ .||.|+=|.-+..... .
T Consensus 23 ~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~--~Lls~-gdG~V~gw~W~E~~es~~~K~ 99 (325)
T KOG0649|consen 23 QYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD--FLLSG-GDGLVYGWEWNEEEESLATKR 99 (325)
T ss_pred eEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh--heeec-cCceEEEeeehhhhhhccchh
Confidence 46888999999999998531 2356667899999999999743 34554 5699999876432211 1
Q ss_pred EEEEe--e---ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCc
Q 017296 289 VIKKE--I---NLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDST 363 (374)
Q Consensus 289 ~~~~~--~---~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~ 363 (374)
.+... + ..+.+.|.++.+.|...-++.++.|+.+.-||+++|+...++++|...|.+++--.....+.||++||+
T Consensus 100 lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGt 179 (325)
T KOG0649|consen 100 LWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGT 179 (325)
T ss_pred hhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCcc
Confidence 11100 0 123356889999998887887889999999999999999999999999999998555567899999999
Q ss_pred EEEecCCC
Q 017296 364 VALWELYP 371 (374)
Q Consensus 364 v~~W~~~~ 371 (374)
+|+||...
T Consensus 180 vRvWd~kt 187 (325)
T KOG0649|consen 180 VRVWDTKT 187 (325)
T ss_pred EEEEeccc
Confidence 99999854
No 194
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.46 E-value=5.8e-13 Score=119.49 Aligned_cols=145 Identities=16% Similarity=0.245 Sum_probs=113.2
Q ss_pred EEEEEecCCcEEEEeccCC---------------------------CCceeeeecCccCeEEEEEecCCCceEEEecCCe
Q 017296 223 NVLAGYEDGSILVWDIRNP---------------------------GIPLTAMKVHLEPVLCLSIDESCNGGISGGADQK 275 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~---------------------------~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~ 275 (374)
.++.+..+|.+.+||.... ..|+.....-...|+..+|++++..+|+-|.||.
T Consensus 234 ~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGf 313 (636)
T KOG2394|consen 234 LFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGF 313 (636)
T ss_pred eEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCce
Confidence 4777889999999986421 0111111222346778888999999999999999
Q ss_pred EEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeC-----
Q 017296 276 IVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSS----- 350 (374)
Q Consensus 276 i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp----- 350 (374)
+|++|++... +...++.--.++.+++|||||+||++||+|--|.||.+.+.+.+..-++|...|+.|+|.|
T Consensus 314 LRvF~fdt~e----Llg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ 389 (636)
T KOG2394|consen 314 LRIFDFDTQE----LLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTST 389 (636)
T ss_pred EEEeeccHHH----HHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeeccccccc
Confidence 9999997532 2222333446799999999999999999999999999999999998999999999999973
Q ss_pred ------------------------------CC-------------CEEEEEeCCCcEEEecCCC
Q 017296 351 ------------------------------DC-------------KLMASASEDSTVALWELYP 371 (374)
Q Consensus 351 ------------------------------~~-------------~~las~s~D~~v~~W~~~~ 371 (374)
++ -.+.|.+.|..+.|||+++
T Consensus 390 ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlte 453 (636)
T KOG2394|consen 390 EEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTE 453 (636)
T ss_pred ccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecch
Confidence 11 2467889999999999964
No 195
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=1e-11 Score=116.65 Aligned_cols=116 Identities=13% Similarity=0.069 Sum_probs=79.4
Q ss_pred EEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEE
Q 017296 226 AGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTS 305 (374)
Q Consensus 226 ~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~ 305 (374)
+...+|..++|++.........+ .+.. ....++|++..++..+.++ +.+||+........ .. . ....+.+
T Consensus 309 ~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~l-t~----~-~~~~~~~ 378 (429)
T PRK01742 309 TSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVL-SS----T-FLDESPS 378 (429)
T ss_pred EECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEe-cC----C-CCCCCce
Confidence 34456788888875433223223 2332 4567899998888877766 45588865432211 11 1 1234578
Q ss_pred ECCCCCEEEEEeCCCeEEEEEc--cCCeEEEEecccCCceEEEEEeCC
Q 017296 306 IRPDSKIAATAGWDRRVRIYNY--RKGSALAILKYHHATCNAVSFSSD 351 (374)
Q Consensus 306 ~sp~~~~l~s~~~dg~v~iwd~--~~~~~~~~~~~h~~~v~~v~~sp~ 351 (374)
|+||+++|+.++.++.+.+|++ .+++....+.+|.+.+...+|+|-
T Consensus 379 ~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 379 ISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred ECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 9999999999999999998876 357778888888888999999984
No 196
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.45 E-value=1.9e-11 Score=115.06 Aligned_cols=148 Identities=20% Similarity=0.187 Sum_probs=103.2
Q ss_pred EEEEEecCCcEEEEeccCCCCceeee----ec-------CccCeEEEEEec-CCCceEEEecCCeEEEEEcCCCCCeE--
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAM----KV-------HLEPVLCLSIDE-SCNGGISGGADQKIVLYNLDHSTGSC-- 288 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~----~~-------h~~~v~~~~~~~-~~~~~~s~s~D~~i~lwd~~~~~~~~-- 288 (374)
.++++|.||.|..|+++.-..|...+ .. -...++++.|.+ +...++.|..+|.|.--+-.+.+...
T Consensus 307 ~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~ 386 (555)
T KOG1587|consen 307 EFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEV 386 (555)
T ss_pred ceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccc
Confidence 37888889999999886543322211 11 123678888854 34468899999988774433222211
Q ss_pred --EEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcc-CCeEEEEecccCCceEEEEEeCCCC-EEEEEeCCCcE
Q 017296 289 --VIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYR-KGSALAILKYHHATCNAVSFSSDCK-LMASASEDSTV 364 (374)
Q Consensus 289 --~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~-~~~~~~~~~~h~~~v~~v~~sp~~~-~las~s~D~~v 364 (374)
........|...++++.++|-+..+...+.|-+|+||... ...++..+..+...|.+++|||-.. .+|++..||++
T Consensus 387 ~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l 466 (555)
T KOG1587|consen 387 SYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNL 466 (555)
T ss_pred cccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCce
Confidence 1111233456779999999976655444449999999887 6677777888888999999999876 67888899999
Q ss_pred EEecCC
Q 017296 365 ALWELY 370 (374)
Q Consensus 365 ~~W~~~ 370 (374)
.|||+.
T Consensus 467 ~iWDLl 472 (555)
T KOG1587|consen 467 DIWDLL 472 (555)
T ss_pred ehhhhh
Confidence 999984
No 197
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.44 E-value=4.4e-11 Score=103.03 Aligned_cols=142 Identities=21% Similarity=0.335 Sum_probs=106.6
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeee---cCccCeEEEEEecCCCceEE-Ee-cCCeEEEEEcCCCCCeEEEEEeeecC
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMK---VHLEPVLCLSIDESCNGGIS-GG-ADQKIVLYNLDHSTGSCVIKKEINLE 297 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~s-~s-~D~~i~lwd~~~~~~~~~~~~~~~~~ 297 (374)
++++.=++ .|.|||++.-. .+.++. .+...+..++++....+++- ++ .-|.|.+||+..-+ ....+++|
T Consensus 99 RLvV~Lee-~IyIydI~~Mk-lLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~----~v~~I~aH 172 (391)
T KOG2110|consen 99 RLVVCLEE-SIYIYDIKDMK-LLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQ----PVNTINAH 172 (391)
T ss_pred eEEEEEcc-cEEEEecccce-eehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccce----eeeEEEec
Confidence 45554444 49999997532 233322 23334556666555445543 23 35899999986432 23456789
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCe-EEEEEccCCeEEEEecccC--CceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 298 RPGISGTSIRPDSKIAATAGWDRR-VRIYNYRKGSALAILKYHH--ATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 298 ~~~v~~~~~sp~~~~l~s~~~dg~-v~iwd~~~~~~~~~~~~h~--~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
...+.+++|+|+|.+||+|++.|| ||||.+.+|+.++.++... ..|.+++|+||+++|+..|.-++|.++.++
T Consensus 173 ~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 173 KGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLE 248 (391)
T ss_pred CCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEec
Confidence 999999999999999999999998 8999999999999987554 578899999999999999999999999885
No 198
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.43 E-value=2.8e-11 Score=118.45 Aligned_cols=147 Identities=18% Similarity=0.267 Sum_probs=98.8
Q ss_pred EEEEEecCCcEEEEeccCCCCceeee--ecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCC
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAM--KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPG 300 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~ 300 (374)
.++.+...+.|..||+++.. ....+ .--.+.|+++++||.+..++.|...|.+.+||++.....+... .. ++..
T Consensus 1165 ~lvy~T~~~~iv~~D~r~~~-~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~--~P-~~~~ 1240 (1431)
T KOG1240|consen 1165 VLVYATDLSRIVSWDTRMRH-DAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWE--HP-ARAP 1240 (1431)
T ss_pred eEEEEEeccceEEecchhhh-hHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeeccc--Cc-ccCC
Confidence 46678889999999998632 12222 2235689999999999999999999999999998754332221 11 1234
Q ss_pred eEEEEECC---CCCEEEEEe--CCCeEEEEEccCCeEEEEeccc-CC------------------ceEEEEEeCCCCEEE
Q 017296 301 ISGTSIRP---DSKIAATAG--WDRRVRIYNYRKGSALAILKYH-HA------------------TCNAVSFSSDCKLMA 356 (374)
Q Consensus 301 v~~~~~sp---~~~~l~s~~--~dg~v~iwd~~~~~~~~~~~~h-~~------------------~v~~v~~sp~~~~la 356 (374)
+..+..+| .....++++ ..+.|.+|++.+|.+..++-.. .. ......+..-+..+.
T Consensus 1241 i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~l 1320 (1431)
T KOG1240|consen 1241 IRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLL 1320 (1431)
T ss_pred cceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceee
Confidence 55555554 344555555 4788999999988665554322 10 111122333345889
Q ss_pred EEeCCCcEEEecCCCCC
Q 017296 357 SASEDSTVALWELYPPH 373 (374)
Q Consensus 357 s~s~D~~v~~W~~~~~~ 373 (374)
+|+.|+.||.||...|.
T Consensus 1321 tggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1321 TGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred ecCCccceeeccCCCcc
Confidence 99999999999998875
No 199
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.43 E-value=1.1e-11 Score=103.46 Aligned_cols=205 Identities=16% Similarity=0.201 Sum_probs=129.5
Q ss_pred cCCCceeEEEEeC-CCCEEEEecCCCcEEEEeCcccce--ee-eeeeeeceeeeEEeccCCccccceeeeccccCeEEEE
Q 017296 16 GHRASVTDVCFHQ-TKPILFAGTTGGELRIWDTVQHRT--VS-SSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (374)
Q Consensus 16 gH~~~V~~l~~~~-~~~~l~s~s~D~~v~vWd~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvw 91 (374)
.|.+++++-.|+. +-+++.++|-|.++.|||++++.. +. -+-.|... |.-++|.- ...+.++|.|.||.||+|
T Consensus 148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKE--V~DIaf~~-~s~~~FASvgaDGSvRmF 224 (364)
T KOG0290|consen 148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKE--VYDIAFLK-GSRDVFASVGADGSVRMF 224 (364)
T ss_pred ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcc--eeEEEecc-CccceEEEecCCCcEEEE
Confidence 4568899999986 667899999999999999998733 22 23346543 66777765 234689999999999999
Q ss_pred ecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCC
Q 017296 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL 171 (374)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 171 (374)
|++.-+..
T Consensus 225 DLR~leHS------------------------------------------------------------------------ 232 (364)
T KOG0290|consen 225 DLRSLEHS------------------------------------------------------------------------ 232 (364)
T ss_pred Eecccccc------------------------------------------------------------------------
Confidence 99752110
Q ss_pred CeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEE-EecCCcEEEEeccCCCCceeeeec
Q 017296 172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA-GYEDGSILVWDIRNPGIPLTAMKV 250 (374)
Q Consensus 172 ~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gs~dg~i~iwdl~~~~~~~~~~~~ 250 (374)
+|.+=|....+.+..+..+ + +...++++ +.+...|.|-|+|.+..++..+++
T Consensus 233 -TIIYE~p~~~~pLlRLswn----------k----------------qDpnymATf~~dS~~V~iLDiR~P~tpva~L~~ 285 (364)
T KOG0290|consen 233 -TIIYEDPSPSTPLLRLSWN----------K----------------QDPNYMATFAMDSNKVVILDIRVPCTPVARLRN 285 (364)
T ss_pred -eEEecCCCCCCcceeeccC----------c----------------CCchHHhhhhcCCceEEEEEecCCCcceehhhc
Confidence 0000000001111122110 0 00011222 344567899999999999999999
Q ss_pred CccCeEEEEEec-CCCceEEEecCCeEEEEEcCCCCCeEEEEEeeec-CCCCeEEEEECC-CCCEEEEEeCCCeEE
Q 017296 251 HLEPVLCLSIDE-SCNGGISGGADQKIVLYNLDHSTGSCVIKKEINL-ERPGISGTSIRP-DSKIAATAGWDRRVR 323 (374)
Q Consensus 251 h~~~v~~~~~~~-~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~-~~~~v~~~~~sp-~~~~l~s~~~dg~v~ 323 (374)
|...|+.+++.| +...+.|+|.|..+-+||+..........+.+.+ -...|..+.|+| .+..|+... +++..
T Consensus 286 H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~-~kkle 360 (364)
T KOG0290|consen 286 HQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICF-GKKLE 360 (364)
T ss_pred CcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEe-cCeee
Confidence 999999999965 4556889999999999999754321111111111 124588889986 344566443 44443
No 200
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.41 E-value=3.4e-13 Score=126.68 Aligned_cols=192 Identities=20% Similarity=0.284 Sum_probs=133.2
Q ss_pred CCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEec
Q 017296 159 EGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDI 238 (374)
Q Consensus 159 ~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl 238 (374)
+..++.++.|++|..++||.++++.++..+.++. ....-+ ++. .....++++|.|..|++|-+
T Consensus 199 Drtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs--------~ditdl--avs-------~~n~~iaaaS~D~vIrvWrl 261 (1113)
T KOG0644|consen 199 DRTGRYIITGSDDRLVKIWSMETARCLASCRGHS--------GDITDL--AVS-------SNNTMIAAASNDKVIRVWRL 261 (1113)
T ss_pred ccccceEeecCccceeeeeeccchhhhccCCCCc--------cccchh--ccc-------hhhhhhhhcccCceEEEEec
Confidence 3445678899999999999999999988876542 211111 110 11124778999999999999
Q ss_pred cCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCe--------------EEEEEeee---------
Q 017296 239 RNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGS--------------CVIKKEIN--------- 295 (374)
Q Consensus 239 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~--------------~~~~~~~~--------- 295 (374)
.. +.++..+.+|++.|++++|+|. .+.+.||++++||.+-.... +.+..+.+
T Consensus 262 ~~-~~pvsvLrghtgavtaiafsP~----~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~ 336 (1113)
T KOG0644|consen 262 PD-GAPVSVLRGHTGAVTAIAFSPR----ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSR 336 (1113)
T ss_pred CC-CchHHHHhccccceeeeccCcc----ccCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccC
Confidence 86 6788889999999999999985 47889999999998611100 00000000
Q ss_pred ---cCCCCeEE-------E---EECCC-CCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCC-EEEEEeC
Q 017296 296 ---LERPGISG-------T---SIRPD-SKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCK-LMASASE 360 (374)
Q Consensus 296 ---~~~~~v~~-------~---~~sp~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~-~las~s~ 360 (374)
........ + .++.| ..+.+++=.+-.+++|++.+|.....+.+|...+..+.++|-+. ...+++.
T Consensus 337 d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~ 416 (1113)
T KOG0644|consen 337 DGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGY 416 (1113)
T ss_pred CcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccC
Confidence 00000111 1 11111 13455566677888999999988888899999999999999666 4468999
Q ss_pred CCcEEEecCCCC
Q 017296 361 DSTVALWELYPP 372 (374)
Q Consensus 361 D~~v~~W~~~~~ 372 (374)
||...|||+-.+
T Consensus 417 dgst~iwdi~eg 428 (1113)
T KOG0644|consen 417 DGSTIIWDIWEG 428 (1113)
T ss_pred CCceEeeecccC
Confidence 999999998543
No 201
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.40 E-value=1.8e-11 Score=117.90 Aligned_cols=181 Identities=17% Similarity=0.218 Sum_probs=137.1
Q ss_pred cCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeee
Q 017296 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAM 248 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~ 248 (374)
..++.+-+||...+..+..++... ...-+++....+ +....++++|+.-+.|.+|++.....+. -+
T Consensus 106 ~~~ns~~i~d~~~~~~~~~i~~~e---------r~~l~~~~~~g~----s~~~~~i~~gsv~~~iivW~~~~dn~p~-~l 171 (967)
T KOG0974|consen 106 TSRNSLLIRDSKNSSVLSKIQSDE---------RCTLYSSLIIGD----SAEELYIASGSVFGEIIVWKPHEDNKPI-RL 171 (967)
T ss_pred EcCceEEEEecccCceehhcCCCc---------eEEEEeEEEEec----cCcEEEEEeccccccEEEEeccccCCcc-ee
Confidence 345689999988776655554321 011111111111 1223468889999999999997544444 57
Q ss_pred ecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcc
Q 017296 249 KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYR 328 (374)
Q Consensus 249 ~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~ 328 (374)
.+|...+..+.+.-++..+++.|.|.++|+|++++..... ...=.|..++..++|.|+ .+++++.|-+.++|+.
T Consensus 172 ~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~---~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~- 245 (967)
T KOG0974|consen 172 KGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG---CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV- 245 (967)
T ss_pred cccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC---cccccccceeEEEEeccc--eeEEeccceEEEEEec-
Confidence 8999999999999999999999999999999998643211 111136678999999999 8999999999999976
Q ss_pred CCeEEEEecccC-CceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 329 KGSALAILKYHH-ATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 329 ~~~~~~~~~~h~-~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
.+..+.++.+|. ..++.++..++...++|++.|+.+++|++
T Consensus 246 ~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 246 NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDL 287 (967)
T ss_pred ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhh
Confidence 466777888897 57999999999889999999999999987
No 202
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.39 E-value=1.6e-10 Score=97.89 Aligned_cols=101 Identities=20% Similarity=0.319 Sum_probs=84.4
Q ss_pred EecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCe-EEEEEccCCeEEEEeccc--CCceEEE
Q 017296 270 GGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRR-VRIYNYRKGSALAILKYH--HATCNAV 346 (374)
Q Consensus 270 ~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~-v~iwd~~~~~~~~~~~~h--~~~v~~v 346 (374)
|-.-|.|.+-|+...... ....+.+|...|.+++++.+|..+|+++..|| |||||..+|+.++.++.. .+.|.++
T Consensus 155 g~k~GqvQi~dL~~~~~~--~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~i 232 (346)
T KOG2111|consen 155 GFKTGQVQIVDLASTKPN--APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCI 232 (346)
T ss_pred CCccceEEEEEhhhcCcC--CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEE
Confidence 334688999888532211 12356789999999999999999999999998 999999999999988743 3689999
Q ss_pred EEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 347 SFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 347 ~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
+||||..+||.+|.-||+.|+.+.+.
T Consensus 233 aFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 233 AFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EeCCCccEEEEEcCCCeEEEEEeecC
Confidence 99999999999999999999998653
No 203
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.37 E-value=7.2e-12 Score=104.47 Aligned_cols=140 Identities=19% Similarity=0.235 Sum_probs=104.2
Q ss_pred EEecCCcEEEEeccCCCCceeeee-----cCccCeEEEEEec--CCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCC
Q 017296 226 AGYEDGSILVWDIRNPGIPLTAMK-----VHLEPVLCLSIDE--SCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLER 298 (374)
Q Consensus 226 ~gs~dg~i~iwdl~~~~~~~~~~~-----~h~~~v~~~~~~~--~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~ 298 (374)
++-.|+.|.+|++.+.......+. .|....++-+++| +++.+++. .|+++..||+++...... ..++|.
T Consensus 139 asm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~s---I~dAHg 214 (370)
T KOG1007|consen 139 ASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNS---IEDAHG 214 (370)
T ss_pred EEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcc---hhhhhc
Confidence 344589999999987544333322 2344555555644 66665554 689999999975432222 124566
Q ss_pred CCeEEEEECCCCCE-EEEEeCCCeEEEEEccCC-eEEEEecccCCceEEEEEeCCC-CEEEEEeCCCcEEEecC
Q 017296 299 PGISGTSIRPDSKI-AATAGWDRRVRIYNYRKG-SALAILKYHHATCNAVSFSSDC-KLMASASEDSTVALWEL 369 (374)
Q Consensus 299 ~~v~~~~~sp~~~~-l~s~~~dg~v~iwd~~~~-~~~~~~~~h~~~v~~v~~sp~~-~~las~s~D~~v~~W~~ 369 (374)
..++.+.|.|+.++ |++++.||.|||||.+.. .+++.+.+|...|++|.|+|.. ++|.|+|.|..|-+|..
T Consensus 215 q~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca 288 (370)
T KOG1007|consen 215 QRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCA 288 (370)
T ss_pred ceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEec
Confidence 67999999999875 689999999999999754 5688899999999999999965 48889999999999965
No 204
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.37 E-value=1.2e-11 Score=113.35 Aligned_cols=137 Identities=19% Similarity=0.249 Sum_probs=105.7
Q ss_pred eEEEEEecCCcEEEEeccCCC------CceeeeecCccCeEEEEEecC-CCceEEEecCCeEEEEEcCCCCCeEEEEEee
Q 017296 222 VNVLAGYEDGSILVWDIRNPG------IPLTAMKVHLEPVLCLSIDES-CNGGISGGADQKIVLYNLDHSTGSCVIKKEI 294 (374)
Q Consensus 222 ~~~~~gs~dg~i~iwdl~~~~------~~~~~~~~h~~~v~~~~~~~~-~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~ 294 (374)
..++.+++||.|++|.+...+ .+-..++.|.+.|..+.|+|- ...+++++.|-+|+|||+...+.. ..+
T Consensus 641 ~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~----~~l 716 (1012)
T KOG1445|consen 641 ERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLY----SRL 716 (1012)
T ss_pred HHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhh----hee
Confidence 368999999999999996543 245567899999999999873 345689999999999999765433 345
Q ss_pred ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCe-EEEEecccC-CceEEEEEeCCCCEEEEEeCCC
Q 017296 295 NLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGS-ALAILKYHH-ATCNAVSFSSDCKLMASASEDS 362 (374)
Q Consensus 295 ~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~h~-~~v~~v~~sp~~~~las~s~D~ 362 (374)
..|.+.|.+++|||||+.+|+-|.||++++|+-++++ +++.-++.. ..-..+-|.-||++++..+-|+
T Consensus 717 ~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk 786 (1012)
T KOG1445|consen 717 VGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDK 786 (1012)
T ss_pred ccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccc
Confidence 6788999999999999999999999999999987654 333323222 2334567888999887666554
No 205
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.33 E-value=5.7e-10 Score=101.79 Aligned_cols=191 Identities=19% Similarity=0.241 Sum_probs=134.7
Q ss_pred EEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecC--------------CCCCceEEEEEecC
Q 017296 165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPS--------------KSQGFVNVLAGYED 230 (374)
Q Consensus 165 ~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~gs~d 230 (374)
++....|+.+++||.+.++.-..+...... .+...+.... ...+ .+.+...++.|...
T Consensus 8 ~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~-------s~t~~~~~w~-L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~ 79 (541)
T KOG4547|consen 8 FALSTGDGRLRIWDTAKNQLQQEFAPIASL-------SGTCTYTKWG-LSADYSPMKWLSLEKAKKASLDTSMLVLGTPQ 79 (541)
T ss_pred EeecCCCCeEEEEEccCceeeeeeccchhc-------cCcceeEEEE-EEeccchHHHHhHHHHhhccCCceEEEeecCC
Confidence 444556799999999998876665432211 0111111100 0000 11233457789999
Q ss_pred CcEEEEeccCCCCceeee-ecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCC
Q 017296 231 GSILVWDIRNPGIPLTAM-KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPD 309 (374)
Q Consensus 231 g~i~iwdl~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 309 (374)
|.|.+|+........+.. ..|-++|+++....+...+.|++.|..+..|+..... .....+.....+.+++++||
T Consensus 80 g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~----~~~~~~~~~~~~~sl~is~D 155 (541)
T KOG4547|consen 80 GSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV----IIRIWKEQKPLVSSLCISPD 155 (541)
T ss_pred ccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccce----eeeeeccCCCccceEEEcCC
Confidence 999999997644322222 3588999999887777778999999999999986432 22333445567889999999
Q ss_pred CCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCC-----CCE-EEEEeCCCcEEEecC
Q 017296 310 SKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSD-----CKL-MASASEDSTVALWEL 369 (374)
Q Consensus 310 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~-----~~~-las~s~D~~v~~W~~ 369 (374)
++++++| .+.|++||+++++.+.++.+|.+.|.+++|.-+ |++ |.++..+..+.+|-.
T Consensus 156 ~~~l~~a--s~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v 219 (541)
T KOG4547|consen 156 GKILLTA--SRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVV 219 (541)
T ss_pred CCEEEec--cceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEE
Confidence 9999887 478999999999999999999999999999877 664 455667777777854
No 206
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.32 E-value=1e-11 Score=111.62 Aligned_cols=148 Identities=22% Similarity=0.324 Sum_probs=109.9
Q ss_pred EEEEecCCcEEEEeccCCCCceeeee----cCccCeEEEEEec-CCCceEEEecCCeEEEEEcCCCC------------C
Q 017296 224 VLAGYEDGSILVWDIRNPGIPLTAMK----VHLEPVLCLSIDE-SCNGGISGGADQKIVLYNLDHST------------G 286 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~~~~~~----~h~~~v~~~~~~~-~~~~~~s~s~D~~i~lwd~~~~~------------~ 286 (374)
++.|..-|.|.+.|..... ....+. .....++|+.+-+ +...++.+-.+|.+.++|.+-.- +
T Consensus 188 llIGf~tGqvq~idp~~~~-~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~ 266 (636)
T KOG2394|consen 188 LLIGFTTGQVQLIDPINFE-VSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDG 266 (636)
T ss_pred eEEeeccCceEEecchhhH-HHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCC
Confidence 7789999999999986521 111111 1246899999843 44456778889999999764110 0
Q ss_pred -eEEEE-----------EeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCE
Q 017296 287 -SCVIK-----------KEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKL 354 (374)
Q Consensus 287 -~~~~~-----------~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~ 354 (374)
..... ..+......+...+|+|||++||+-+.||.+||||..+.+.+..++.-.+...|+.|||||++
T Consensus 267 ~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKy 346 (636)
T KOG2394|consen 267 DQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKY 346 (636)
T ss_pred CeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccE
Confidence 00000 011122346788999999999999999999999999988888777777789999999999999
Q ss_pred EEEEeCCCcEEEecCCCC
Q 017296 355 MASASEDSTVALWELYPP 372 (374)
Q Consensus 355 las~s~D~~v~~W~~~~~ 372 (374)
|++|++|-.|.+|.+.+.
T Consensus 347 IvtGGEDDLVtVwSf~er 364 (636)
T KOG2394|consen 347 IVTGGEDDLVTVWSFEER 364 (636)
T ss_pred EEecCCcceEEEEEeccc
Confidence 999999999999998653
No 207
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=3.3e-10 Score=106.51 Aligned_cols=138 Identities=14% Similarity=0.127 Sum_probs=94.1
Q ss_pred EEE-EecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEe-cCCeEEEEEcCCCCCeEEEEEeeecCCCCe
Q 017296 224 VLA-GYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG-ADQKIVLYNLDHSTGSCVIKKEINLERPGI 301 (374)
Q Consensus 224 ~~~-gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s-~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v 301 (374)
++. .+.+|.+.||.+.........+..+...+....|+|++..++..+ .++...+|+++...+.... +. +. .
T Consensus 262 La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~---l~-~~-~- 335 (429)
T PRK01742 262 LAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASL---VG-GR-G- 335 (429)
T ss_pred EEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEE---ec-CC-C-
Confidence 444 457888777754322233455666767788899999998776555 5788999988654332221 11 11 1
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 302 SGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 302 ~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
....|+||+++|+.++.++.+ +||+.+++.......+ ...++.|+|||++|++++.++.+++|.+.
T Consensus 336 ~~~~~SpDG~~ia~~~~~~i~-~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 336 YSAQISADGKTLVMINGDNVV-KQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred CCccCCCCCCEEEEEcCCCEE-EEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 456899999999888777654 5999887654322222 23567899999999999999999988763
No 208
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.30 E-value=1.8e-08 Score=85.53 Aligned_cols=101 Identities=14% Similarity=0.278 Sum_probs=81.8
Q ss_pred EecCCcEEEEeccCCCC-ceeeeecCccCeEEEEEecCCCceEEEecCC-eEEEEEcCCCCCeEEEEEeeecCCCCeEEE
Q 017296 227 GYEDGSILVWDIRNPGI-PLTAMKVHLEPVLCLSIDESCNGGISGGADQ-KIVLYNLDHSTGSCVIKKEINLERPGISGT 304 (374)
Q Consensus 227 gs~dg~i~iwdl~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~-~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~ 304 (374)
|..-|+|+|-|+..... +-..+..|...|.|++...+|..+||+|..| -||+||...++..+.++ .......+.++
T Consensus 155 g~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~R--RG~d~A~iy~i 232 (346)
T KOG2111|consen 155 GFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELR--RGVDRADIYCI 232 (346)
T ss_pred CCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeee--cCCchheEEEE
Confidence 67779999999976433 2356789999999999999999999999988 58999987655333322 22334569999
Q ss_pred EECCCCCEEEEEeCCCeEEEEEccC
Q 017296 305 SIRPDSKIAATAGWDRRVRIYNYRK 329 (374)
Q Consensus 305 ~~sp~~~~l~s~~~dg~v~iwd~~~ 329 (374)
+||||.++||.++..||++||.+++
T Consensus 233 aFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 233 AFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EeCCCccEEEEEcCCCeEEEEEeec
Confidence 9999999999999999999998865
No 209
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.29 E-value=4.2e-11 Score=104.27 Aligned_cols=120 Identities=18% Similarity=0.338 Sum_probs=98.0
Q ss_pred ccCeEEEEEecCCC-ceEEEecCCeEEEEEcCCCC-----CeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 017296 252 LEPVLCLSIDESCN-GGISGGADQKIVLYNLDHST-----GSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIY 325 (374)
Q Consensus 252 ~~~v~~~~~~~~~~-~~~s~s~D~~i~lwd~~~~~-----~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iw 325 (374)
..++..+.|++... .++||+.|..|++|-++... .+......+..|...++.+.|+|+|.++|||+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 45788888876544 68999999999999986532 1334445567788889999999999999999999999999
Q ss_pred Ecc--------C-----C---eEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCC
Q 017296 326 NYR--------K-----G---SALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 326 d~~--------~-----~---~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~ 371 (374)
-.. + . ...+.+.+|...|..++|+||+.++++++.|.++++||+--
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~ 154 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHA 154 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecc
Confidence 665 2 1 12346788999999999999999999999999999999753
No 210
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.28 E-value=3.2e-10 Score=96.07 Aligned_cols=122 Identities=17% Similarity=0.195 Sum_probs=91.4
Q ss_pred CccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcc--
Q 017296 251 HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYR-- 328 (374)
Q Consensus 251 h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~-- 328 (374)
++...+++.+.|.++-|+.||.-..|.+|-++....-.+.+...+-.++.|.++.++|++-++++|+.|+++|+|...
T Consensus 99 iNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK 178 (361)
T KOG1523|consen 99 INRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIK 178 (361)
T ss_pred eccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeee
Confidence 456677788888888888888888888888875443322221222345679999999999999999999999999542
Q ss_pred ---C-------------CeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 329 ---K-------------GSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 329 ---~-------------~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
+ |+.+..+....+.|..+.|+|+|..||-.+.|++|.+=|..-|
T Consensus 179 ~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 179 GVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred ccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence 1 1223344445678999999999999999999999998776544
No 211
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.26 E-value=6.3e-11 Score=104.90 Aligned_cols=260 Identities=16% Similarity=0.215 Sum_probs=163.1
Q ss_pred eEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCC
Q 017296 22 TDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSN 101 (374)
Q Consensus 22 ~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~ 101 (374)
+.+.|+.+|..|+-|+.-|.+-..|..+++....+..- ..|..+.|-. ..+++...+...+.++|-..-+
T Consensus 133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~---Etv~Dv~~LH---neq~~AVAQK~y~yvYD~~GtE---- 202 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM---ETVRDVTFLH---NEQFFAVAQKKYVYVYDNNGTE---- 202 (545)
T ss_pred eeeeecCCccEEEecCCccceeeeecccceeeeeeehh---hhhhhhhhhc---chHHHHhhhhceEEEecCCCcE----
Confidence 56888999999999999999999999887655443321 2234444433 2456677778888888864321
Q ss_pred CceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCC
Q 017296 102 PSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNT 181 (374)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~ 181 (374)
..+++...- ...+ ++-+ -.|++++++..+.++.-|+.+
T Consensus 203 -lHClk~~~~-v~rL--------------------------------------eFLP--yHfLL~~~~~~G~L~Y~DVS~ 240 (545)
T KOG1272|consen 203 -LHCLKRHIR-VARL--------------------------------------EFLP--YHFLLVAASEAGFLKYQDVST 240 (545)
T ss_pred -EeehhhcCc-hhhh--------------------------------------cccc--hhheeeecccCCceEEEeech
Confidence 111111000 0000 0000 146788888889999999999
Q ss_pred CceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEe
Q 017296 182 AERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSID 261 (374)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~ 261 (374)
|+.+..+.-. .++...|...+ -+ ..+-+|...|+|-+|.... ..|+..+..|..+|.+++++
T Consensus 241 GklVa~~~t~----------~G~~~vm~qNP------~N-aVih~GhsnGtVSlWSP~s-kePLvKiLcH~g~V~siAv~ 302 (545)
T KOG1272|consen 241 GKLVASIRTG----------AGRTDVMKQNP------YN-AVIHLGHSNGTVSLWSPNS-KEPLVKILCHRGPVSSIAVD 302 (545)
T ss_pred hhhhHHHHcc----------CCccchhhcCC------cc-ceEEEcCCCceEEecCCCC-cchHHHHHhcCCCcceEEEC
Confidence 9876655321 11222222111 11 1355799999999999865 45677778899999999999
Q ss_pred cCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEE-ccCCe--EEEEecc
Q 017296 262 ESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYN-YRKGS--ALAILKY 338 (374)
Q Consensus 262 ~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd-~~~~~--~~~~~~~ 338 (374)
+.|.+.+|+|.|..+++||++..-.... ... ......++||.-| +++.+.-..|.||- ...+. .-..+-.
T Consensus 303 ~~G~YMaTtG~Dr~~kIWDlR~~~ql~t----~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~ 375 (545)
T KOG1272|consen 303 RGGRYMATTGLDRKVKIWDLRNFYQLHT----YRT-PHPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMN 375 (545)
T ss_pred CCCcEEeecccccceeEeeeccccccce----eec-CCCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhh
Confidence 9999999999999999999974321111 111 2346678888655 34455566899993 22211 1112222
Q ss_pred cC--CceEEEEEeCCCCEEEEE
Q 017296 339 HH--ATCNAVSFSSDCKLMASA 358 (374)
Q Consensus 339 h~--~~v~~v~~sp~~~~las~ 358 (374)
|. +.|..+.|.|-...|--|
T Consensus 376 H~~~~~V~~l~FcP~EDvLGIG 397 (545)
T KOG1272|consen 376 HRCGGPVEDLRFCPYEDVLGIG 397 (545)
T ss_pred hccCcccccceeccHHHeeecc
Confidence 32 588899999965554433
No 212
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.25 E-value=1.3e-08 Score=93.02 Aligned_cols=281 Identities=17% Similarity=0.143 Sum_probs=153.3
Q ss_pred EEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeeccee
Q 017296 33 LFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYH 112 (374)
Q Consensus 33 l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~ 112 (374)
+++-..++.|.|.|..+.+.+..+...... ...+.+++ |+++++..+.|+.|.++|+.+++... .++.....
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~--h~~~~~s~--Dgr~~yv~~rdg~vsviD~~~~~~v~----~i~~G~~~ 80 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAP--HAGLKFSP--DGRYLYVANRDGTVSVIDLATGKVVA----TIKVGGNP 80 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTE--EEEEE-TT---SSEEEEEETTSEEEEEETTSSSEEE----EEE-SSEE
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCc--eeEEEecC--CCCEEEEEcCCCeEEEEECCcccEEE----EEecCCCc
Confidence 456778899999999988888777643322 23344555 67888888899999999998874311 11111100
Q ss_pred eeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCc
Q 017296 113 FCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNS 192 (374)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~ 192 (374)
. .. .+ ..++++++++....+.+.++|.++.+.+..+....
T Consensus 81 ----------~------------------~i-----------~~-s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~ 120 (369)
T PF02239_consen 81 ----------R------------------GI-----------AV-SPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGG 120 (369)
T ss_dssp ----------E------------------EE-----------EE---TTTEEEEEEEETTEEEEEETTT--EEEEEE--E
T ss_pred ----------c------------------eE-----------EE-cCCCCEEEEEecCCCceeEeccccccceeeccccc
Confidence 0 00 00 13456788888788999999999998877765332
Q ss_pred cCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEE-e
Q 017296 193 CGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISG-G 271 (374)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~-s 271 (374)
..... ...+ ..++.. .+ .....+++--+-+.|-+-|......................|++++++++.+ -
T Consensus 121 ~~~~~---~~~R--v~aIv~-s~---~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~ 191 (369)
T PF02239_consen 121 MPVDG---PESR--VAAIVA-SP---GRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAAN 191 (369)
T ss_dssp E-TTT---S-----EEEEEE--S---SSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEG
T ss_pred ccccc---cCCC--ceeEEe-cC---CCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeeccc
Confidence 11100 1111 111111 11 1222344444458888888765433222232334566778889998887654 4
Q ss_pred cCCeEEEEEcCCCCCeEEEE---------------------------------------------------EeeecCCCC
Q 017296 272 ADQKIVLYNLDHSTGSCVIK---------------------------------------------------KEINLERPG 300 (374)
Q Consensus 272 ~D~~i~lwd~~~~~~~~~~~---------------------------------------------------~~~~~~~~~ 300 (374)
.++.|-++|.+......... .++.....+
T Consensus 192 ~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g 271 (369)
T PF02239_consen 192 GSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG 271 (369)
T ss_dssp GGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS
T ss_pred ccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc
Confidence 46677777765321100000 011111111
Q ss_pred eEEEEECCCCCEEEEE----eCCCeEEEEEccCCeEEEEecccC-CceEEEEEeCCCCEEEEEeCCC--cEEEecCCC
Q 017296 301 ISGTSIRPDSKIAATA----GWDRRVRIYNYRKGSALAILKYHH-ATCNAVSFSSDCKLMASASEDS--TVALWELYP 371 (374)
Q Consensus 301 v~~~~~sp~~~~l~s~----~~dg~v~iwd~~~~~~~~~~~~h~-~~v~~v~~sp~~~~las~s~D~--~v~~W~~~~ 371 (374)
.-+.-||+++++... ...++|.++|.++.+...++.... ..+.++.|++||+++..+.+|+ .|.++|..+
T Consensus 272 -lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~T 348 (369)
T PF02239_consen 272 -LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKT 348 (369)
T ss_dssp ---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTT
T ss_pred -ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCC
Confidence 335669999999877 445899999999998877775333 3589999999999664443333 699998643
No 213
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.25 E-value=5e-10 Score=97.31 Aligned_cols=145 Identities=17% Similarity=0.207 Sum_probs=113.2
Q ss_pred EEEEEecC--CcEEEEeccCCCCceeeeec---------CccCeEEEEEecC--CCceEEEecCCeEEEEEcCCCCCeEE
Q 017296 223 NVLAGYED--GSILVWDIRNPGIPLTAMKV---------HLEPVLCLSIDES--CNGGISGGADQKIVLYNLDHSTGSCV 289 (374)
Q Consensus 223 ~~~~gs~d--g~i~iwdl~~~~~~~~~~~~---------h~~~v~~~~~~~~--~~~~~s~s~D~~i~lwd~~~~~~~~~ 289 (374)
.+++|+.. ..+++||+... ..+..-+. -.-.++.+.|-+. ...|+++..-+.+++||...+ .+.+
T Consensus 163 Iva~GGke~~n~lkiwdle~~-~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~q-RRPV 240 (412)
T KOG3881|consen 163 IVATGGKENINELKIWDLEQS-KQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQ-RRPV 240 (412)
T ss_pred eEecCchhcccceeeeecccc-eeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCccc-Ccce
Confidence 35558887 88999999764 22221111 1124566677444 567899999999999998743 3333
Q ss_pred EEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEE-ecccCCceEEEEEeCCCCEEEEEeCCCcEEEec
Q 017296 290 IKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAI-LKYHHATCNAVSFSSDCKLMASASEDSTVALWE 368 (374)
Q Consensus 290 ~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~-~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~ 368 (374)
. .+......++++...|.+.+|++|..-+.+..||++.++.+.. +++-.+.|.++-.+|.+++||++|-|..|||+|
T Consensus 241 ~--~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD 318 (412)
T KOG3881|consen 241 A--QFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHD 318 (412)
T ss_pred e--EeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEee
Confidence 2 2334456799999999999999999999999999999998876 788889999999999999999999999999999
Q ss_pred CCC
Q 017296 369 LYP 371 (374)
Q Consensus 369 ~~~ 371 (374)
+..
T Consensus 319 ~kt 321 (412)
T KOG3881|consen 319 IKT 321 (412)
T ss_pred ccc
Confidence 865
No 214
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.24 E-value=1.1e-09 Score=93.76 Aligned_cols=255 Identities=14% Similarity=0.221 Sum_probs=144.6
Q ss_pred CCCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeC-cccceeeeeeeeeceeeeEEeccCCccccceeeecccc
Q 017296 7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDT-VQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRD 85 (374)
Q Consensus 7 ~~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D 85 (374)
-+.++..++||.+.|++...-|...-+++.++|.++|||-. ..++.-..+. |.....+.+.++.. ...+|+.|-..
T Consensus 13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~-~~mP~~~~~~~y~~--e~~~L~vg~~n 89 (404)
T KOG1409|consen 13 KPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIY-HYMPSPCSAMEYVS--ESRRLYVGQDN 89 (404)
T ss_pred chhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhh-hhCCCCceEeeeec--cceEEEEEEec
Confidence 34577889999999999998888889999999999999964 3344322221 33334455555554 44566666666
Q ss_pred CeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEE
Q 017296 86 GTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMA 165 (374)
Q Consensus 86 ~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (374)
|++--+.+... -+.....+....|.+.+... .......+++
T Consensus 90 gtvtefs~sed---fnkm~~~r~~~~h~~~v~~~------------------------------------if~~~~e~V~ 130 (404)
T KOG1409|consen 90 GTVTEFALSED---FNKMTFLKDYLAHQARVSAI------------------------------------VFSLTHEWVL 130 (404)
T ss_pred ceEEEEEhhhh---hhhcchhhhhhhhhcceeeE------------------------------------EecCCceeEE
Confidence 66655544321 00000011111111100000 0000112222
Q ss_pred EcccCCCeEEEE-ecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCC-CC
Q 017296 166 VAGEQLSEVEIW-DLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP-GI 243 (374)
Q Consensus 166 ~~~~~d~~i~vW-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~-~~ 243 (374)
+.+.|..+ .| -.+.+..+.. +.+.... ............|-..|.|..-.+... -.
T Consensus 131 -s~~~dk~~-~~hc~e~~~~lg~------------------Y~~~~~~--t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~ 188 (404)
T KOG1409|consen 131 -STGKDKQF-AWHCTESGNRLGG------------------YNFETPA--SALQFDALYAFVGDHSGQITMLKLEQNGCQ 188 (404)
T ss_pred -Eeccccce-EEEeeccCCcccc------------------eEeeccC--CCCceeeEEEEecccccceEEEEEeecCCc
Confidence 22333222 23 1222221111 0000000 000001112334444555555544322 24
Q ss_pred ceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEE
Q 017296 244 PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVR 323 (374)
Q Consensus 244 ~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~ 323 (374)
++.++.+|..++.++.+++....+.+|..|..+.+||+...++. ..++..|...+..++.-+--+.+.|.+.||.|.
T Consensus 189 ~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~---~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~ 265 (404)
T KOG1409|consen 189 LITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGT---AYELQGHNDKVQALSYAQHTRQLISCGEDGGIV 265 (404)
T ss_pred eEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcce---eeeeccchhhhhhhhhhhhheeeeeccCCCeEE
Confidence 57788999999999999998888899999999999999765543 234455666677777777778899999999999
Q ss_pred EEEcc
Q 017296 324 IYNYR 328 (374)
Q Consensus 324 iwd~~ 328 (374)
+||.+
T Consensus 266 ~w~mn 270 (404)
T KOG1409|consen 266 VWNMN 270 (404)
T ss_pred EEecc
Confidence 99986
No 215
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.24 E-value=6.7e-10 Score=95.04 Aligned_cols=285 Identities=15% Similarity=0.214 Sum_probs=157.5
Q ss_pred CCceeEEEEeCCCCEEEEecCCCcEEEEeCcccc-----eeeeeeeeece----------eeeEEeccCCccccceeeec
Q 017296 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-----TVSSSWVHSAA----------HGIVSVATGPSIGLNKVISQ 82 (374)
Q Consensus 18 ~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~-----~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~s~ 82 (374)
.+-|.+|.|.-.|.+|+||..+|.|.++.-+... ....++.|.+. ..+..+.+....+...++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4678999999999999999999999999743322 12234444333 23556666665566678888
Q ss_pred cccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCc
Q 017296 83 GRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPK 162 (374)
Q Consensus 83 ~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (374)
..|++|++|.+...... ...++.. ....+.... ... .+..++.
T Consensus 105 tNdktiKlWKi~er~~k--------~~~~~~~---~~~~~~~~~----------------~lr----------~p~~~~~ 147 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSK--------KEGYNLP---EEGPPGTIT----------------SLR----------LPVEGRH 147 (433)
T ss_pred cCCcceeeeeeeccccc--------ccccccc---ccCCCCccc----------------eee----------ceeeccc
Confidence 99999999999753210 0000000 000000000 000 0000000
Q ss_pred eEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCC
Q 017296 163 YMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 242 (374)
Q Consensus 163 ~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~ 242 (374)
-+.+.+. -.|++.=.....+..+ .+. ++. ..+...+|=.|-+|.++...
T Consensus 148 ~~~vea~---prRv~aNaHtyhiNSI-----------------------S~N---sD~--Et~lSADdLRINLWnlei~d 196 (433)
T KOG1354|consen 148 DLEVEAS---PRRVYANAHTYHINSI-----------------------SVN---SDK--ETFLSADDLRINLWNLEIID 196 (433)
T ss_pred cceeeee---eeeeccccceeEeeee-----------------------eec---Ccc--ceEeeccceeeeeccccccC
Confidence 0111111 1222210000000000 011 111 12334456677888876443
Q ss_pred Ccee--eeecC-----ccCeEEEEEec-CCCceEEEecCCeEEEEEcCCCCCeEEEE----Eee---------ecCCCCe
Q 017296 243 IPLT--AMKVH-----LEPVLCLSIDE-SCNGGISGGADQKIVLYNLDHSTGSCVIK----KEI---------NLERPGI 301 (374)
Q Consensus 243 ~~~~--~~~~h-----~~~v~~~~~~~-~~~~~~s~s~D~~i~lwd~~~~~~~~~~~----~~~---------~~~~~~v 301 (374)
..+. .++.+ ++-|++-.|+| .+..++-.|..|+|+|-|++... .|... .+. ..--..|
T Consensus 197 ~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~a-LCd~hsKlfEepedp~~rsffseiIsSI 275 (433)
T KOG1354|consen 197 QSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSA-LCDAHSKLFEEPEDPSSRSFFSEIISSI 275 (433)
T ss_pred CceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhh-hhcchhhhhccccCCcchhhHHHHhhhh
Confidence 3222 12222 24466677766 45566777888999999986321 11100 000 0001236
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEc-cCCeEEEEecccCC------------ce---EEEEEeCCCCEEEEEeCCCcEE
Q 017296 302 SGTSIRPDSKIAATAGWDRRVRIYNY-RKGSALAILKYHHA------------TC---NAVSFSSDCKLMASASEDSTVA 365 (374)
Q Consensus 302 ~~~~~sp~~~~l~s~~~dg~v~iwd~-~~~~~~~~~~~h~~------------~v---~~v~~sp~~~~las~s~D~~v~ 365 (374)
+.+.|+++|+||++-. --+|++||+ ...+++.+++-|.- .| ..+.|+-++.+++|||-....+
T Consensus 276 SDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~fr 354 (433)
T KOG1354|consen 276 SDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFR 354 (433)
T ss_pred hceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEE
Confidence 7899999999999764 379999999 45677777766641 12 3468999999999999999999
Q ss_pred EecCCCC
Q 017296 366 LWELYPP 372 (374)
Q Consensus 366 ~W~~~~~ 372 (374)
++++.++
T Consensus 355 vf~~~~g 361 (433)
T KOG1354|consen 355 VFNLARG 361 (433)
T ss_pred EecCCCC
Confidence 9986554
No 216
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.24 E-value=3.3e-11 Score=108.68 Aligned_cols=126 Identities=16% Similarity=0.281 Sum_probs=104.1
Q ss_pred eeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECC--CCCEEEEEeCCCeEE
Q 017296 246 TAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP--DSKIAATAGWDRRVR 323 (374)
Q Consensus 246 ~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~s~~~dg~v~ 323 (374)
+.+.||++-|+|+.+..+|..|++||.|-.+.+||.-... .+...-..|...|.++.|-| +.+++++|..|+.|+
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~K---llhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYK---LLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcc---eeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 3578999999999999999999999999999999964221 11222345777899999988 577899999999999
Q ss_pred EEEccCC----------eEEEEecccCCceEEEEEeCCCC-EEEEEeCCCcEEEecCCCCCC
Q 017296 324 IYNYRKG----------SALAILKYHHATCNAVSFSSDCK-LMASASEDSTVALWELYPPHA 374 (374)
Q Consensus 324 iwd~~~~----------~~~~~~~~h~~~v~~v~~sp~~~-~las~s~D~~v~~W~~~~~~~ 374 (374)
+||+.+. +....+..|...|..++-.|++. .+-++|+||+++-+|+.+||.
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~ 182 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHV 182 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCcc
Confidence 9999752 23455677999999999999995 888999999999999999873
No 217
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.23 E-value=1.5e-09 Score=94.45 Aligned_cols=266 Identities=15% Similarity=0.227 Sum_probs=153.6
Q ss_pred CCCCCeEEeec-CCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeee-ceeeeEEeccCCccccceeeecc
Q 017296 6 PPPDPVAVLRG-HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS-AAHGIVSVATGPSIGLNKVISQG 83 (374)
Q Consensus 6 ~~~~~~~~l~g-H~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~s~~ 83 (374)
..++|+.++.. |.+.|.||+|+.....|+||+.+++|++.|.++.+.+..+. |. ....|+.+..+|. .+.|++.+
T Consensus 92 k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~-~~~~~~~VY~m~~~P~--DN~~~~~t 168 (609)
T KOG4227|consen 92 KTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVAN-ENNNRGDVYHMDQHPT--DNTLIVVT 168 (609)
T ss_pred cCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeec-ccCcccceeecccCCC--CceEEEEe
Confidence 45688887765 55999999999999999999999999999999888765543 33 2234555666663 58999999
Q ss_pred ccCeEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCce
Q 017296 84 RDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKY 163 (374)
Q Consensus 84 ~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (374)
.++.|-+||++...-.. .... +...+.+ .+. ..+.+..+.+
T Consensus 169 ~~~~V~~~D~Rd~~~~~--~~~~-----------~AN~~~~----------F~t----------------~~F~P~~P~L 209 (609)
T KOG4227|consen 169 RAKLVSFIDNRDRQNPI--SLVL-----------PANSGKN----------FYT----------------AEFHPETPAL 209 (609)
T ss_pred cCceEEEEeccCCCCCC--ceee-----------ecCCCcc----------cee----------------eeecCCCcee
Confidence 99999999997632100 0000 0000000 000 1122334455
Q ss_pred EEEcccCCCeEEEEecCCCce-eEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCC
Q 017296 164 MAVAGEQLSEVEIWDLNTAER-CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 242 (374)
Q Consensus 164 ~~~~~~~d~~i~vWd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~ 242 (374)
++++. ..+-+-|||.+..+. +...... ...+.. ...+| .+ .+.+. |. .+++--....-.+||+....
T Consensus 210 i~~~~-~~~G~~~~D~R~~~~~~~~~~~~--~~L~~~--~~~~M--~~-~~~~~---G~-Q~msiRR~~~P~~~D~~S~R 277 (609)
T KOG4227|consen 210 ILVNS-ETGGPNVFDRRMQARPVYQRSMF--KGLPQE--NTEWM--GS-LWSPS---GN-QFMSIRRGKCPLYFDFISQR 277 (609)
T ss_pred EEecc-ccCCCCceeeccccchHHhhhcc--ccCccc--chhhh--he-eeCCC---CC-eehhhhccCCCEEeeeeccc
Confidence 55444 446689999886542 1110000 000000 00011 11 12111 11 12222222233456665433
Q ss_pred CceeeeecCc-------cCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeE----------------EEE---Eeeec
Q 017296 243 IPLTAMKVHL-------EPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSC----------------VIK---KEINL 296 (374)
Q Consensus 243 ~~~~~~~~h~-------~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~----------------~~~---~~~~~ 296 (374)
.++..+. |. -.+.+++|-.+.. +++||.+=.|.+|.+....... ... ..++.
T Consensus 278 ~~V~k~D-~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrG 355 (609)
T KOG4227|consen 278 CFVLKSD-HNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRG 355 (609)
T ss_pred ceeEecc-CCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEec
Confidence 3332221 22 1355667744433 7999999999999985321100 001 13467
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEEc
Q 017296 297 ERPGISGTSIRPDSKIAATAGWDRRVRIYNY 327 (374)
Q Consensus 297 ~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~ 327 (374)
|++-+..+.|+|...+|++.|-.+.++||.-
T Consensus 356 HRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 356 HRSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred ccccccceeecCCcceEeccchhhheecccc
Confidence 8888889999999999999999999999954
No 218
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.22 E-value=2.4e-09 Score=97.85 Aligned_cols=307 Identities=13% Similarity=0.101 Sum_probs=151.2
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeec-cccCe
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQ-GRDGT 87 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-~~D~~ 87 (374)
+.+.++......-..+.|++||++++.++.|+.|.++|+.+++.+..+.... .-..+++++ ++++++.+ ..+++
T Consensus 27 ~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~---~~~~i~~s~--DG~~~~v~n~~~~~ 101 (369)
T PF02239_consen 27 KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG---NPRGIAVSP--DGKYVYVANYEPGT 101 (369)
T ss_dssp SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS---EEEEEEE----TTTEEEEEEEETTE
T ss_pred eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC---CcceEEEcC--CCCEEEEEecCCCc
Confidence 5567777655444557899999999999999999999999998887765432 234556665 67777765 47899
Q ss_pred EEEEecCCCCCCCCCceeeeecce-------eeeeeeeeccccccccccCCCCcccccc---cCce--eecCCCCCCCCC
Q 017296 88 VKCWDIENGGLSSNPSLTIKTNSY-------HFCKLSLVKEPYANAKQANEPKDCYERE---VGET--VDTDSLCDSKDD 155 (374)
Q Consensus 88 vrvwd~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~ 155 (374)
+.++|.++.+.. ..+..... ..+++-.............+....+..+ .... .....-....+.
T Consensus 102 v~v~D~~tle~v----~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~ 177 (369)
T PF02239_consen 102 VSVIDAETLEPV----KTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDG 177 (369)
T ss_dssp EEEEETTT--EE----EEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEE
T ss_pred eeEeccccccce----eecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeeccccccccc
Confidence 999999876432 11211110 0011100000000000000000001000 0000 000000000011
Q ss_pred CCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEE---eeecCCCCCceEEEEEecCCc
Q 017296 156 VPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQ---AYLPSKSQGFVNVLAGYEDGS 232 (374)
Q Consensus 156 ~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~gs~dg~ 232 (374)
...++++|++++....+.+-++|+++++....+...... ...+..-+... .++.....+. ..++.-....
T Consensus 178 ~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p------~~~~~~~~php~~g~vw~~~~~~~-~~~~~ig~~~ 250 (369)
T PF02239_consen 178 GFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKP------HPGPGANFPHPGFGPVWATSGLGY-FAIPLIGTDP 250 (369)
T ss_dssp EE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSB------EETTEEEEEETTTEEEEEEEBSSS-SEEEEEE--T
T ss_pred ccCcccceeeecccccceeEEEeeccceEEEEeeccccc------cccccccccCCCcceEEeeccccc-eecccccCCc
Confidence 223456777777777789999999998776554321100 00111000000 0000000111 1222223345
Q ss_pred EEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEE----ecCCeEEEEEcCCCCCeEEEEEeee-cCCCCeEEEEEC
Q 017296 233 ILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISG----GADQKIVLYNLDHSTGSCVIKKEIN-LERPGISGTSIR 307 (374)
Q Consensus 233 i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~----s~D~~i~lwd~~~~~~~~~~~~~~~-~~~~~v~~~~~s 307 (374)
+.+||... -..+..+.....+ ..+..+|+.++++.. ...++|.++|.+.. .. ...+. .....+..+.|+
T Consensus 251 v~v~d~~~-wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl--~~--~~~i~~~~~~~~~h~ef~ 324 (369)
T PF02239_consen 251 VSVHDDYA-WKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL--KV--VKTITPGPGKRVVHMEFN 324 (369)
T ss_dssp TT-STTTB-TSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGT--EE--EE-HHHHHT--EEEEEE-
T ss_pred cccchhhc-CeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCc--ce--eEEEeccCCCcEeccEEC
Confidence 56677654 2345566655556 667779999988876 44589999998653 11 11211 111237789999
Q ss_pred CCCCEEEEEeCC--CeEEEEEccCCeEEEEec
Q 017296 308 PDSKIAATAGWD--RRVRIYNYRKGSALAILK 337 (374)
Q Consensus 308 p~~~~l~s~~~d--g~v~iwd~~~~~~~~~~~ 337 (374)
++|+++....++ +.|.++|..+.+.++.+.
T Consensus 325 ~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 325 PDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred CCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 999976544443 379999999999888776
No 219
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.20 E-value=4e-10 Score=95.51 Aligned_cols=148 Identities=12% Similarity=0.168 Sum_probs=117.5
Q ss_pred eEEEEEecCCcEEEEeccCCC--CceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCC
Q 017296 222 VNVLAGYEDGSILVWDIRNPG--IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERP 299 (374)
Q Consensus 222 ~~~~~gs~dg~i~iwdl~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~ 299 (374)
..++.+-+...|.||...... .+..+++.|...|+.+.+.+..+.+++++.|....+|... ..+.......+..+..
T Consensus 23 t~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~-~~~~WkptlvLlRiNr 101 (361)
T KOG1523|consen 23 TQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP-SGGTWKPTLVLLRINR 101 (361)
T ss_pred ceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC-CCCeeccceeEEEecc
Confidence 357788888999999986544 3567788999999999999999899999999999999873 2233332233333445
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEe----cccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 300 GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAIL----KYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 300 ~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~----~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
.++++.++|.+..+|.|+.-+.|.||-.+.-+...+- +-+...|.+++|+|++-+||.||.|+.+|++..+
T Consensus 102 AAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSay 176 (361)
T KOG1523|consen 102 AATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAY 176 (361)
T ss_pred ceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEe
Confidence 6889999999999999999999999988655443221 2356789999999999999999999999999764
No 220
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.16 E-value=5.4e-10 Score=100.75 Aligned_cols=141 Identities=15% Similarity=0.234 Sum_probs=106.9
Q ss_pred eEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCe
Q 017296 222 VNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGI 301 (374)
Q Consensus 222 ~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v 301 (374)
..++..++||.+.+-+- .+..-.....|...+.+-.+++++..+++++.||.|++|.-.+ +++..+......|
T Consensus 76 d~~~i~s~DGkf~il~k--~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG-----MLRStl~Q~~~~v 148 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNK--SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG-----MLRSTVVQNEESI 148 (737)
T ss_pred ceEEEEcCCceEEEecc--cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc-----hHHHHHhhcCcee
Confidence 45888999999888753 2333344677999999999999999999999999999997532 2333333344569
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 302 SGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 302 ~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
++++|.|+..-++ -+.-+.+.|=-+.-...+-.+++|.+-|.++.|+|...+++||++|..-|+||-+
T Consensus 149 ~c~~W~p~S~~vl-~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~ 216 (737)
T KOG1524|consen 149 RCARWAPNSNSIV-FCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ 216 (737)
T ss_pred EEEEECCCCCceE-EecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc
Confidence 9999999977655 2334445444444333444689999999999999999999999999999999864
No 221
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.15 E-value=1.5e-08 Score=95.16 Aligned_cols=114 Identities=11% Similarity=0.029 Sum_probs=71.9
Q ss_pred CCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecC---CeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEE
Q 017296 230 DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD---QKIVLYNLDHSTGSCVIKKEINLERPGISGTSI 306 (374)
Q Consensus 230 dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D---~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~ 306 (374)
++..++|.+...+.....+..+........++|++..++..+.+ ..|.+||++...... + ... .......|
T Consensus 308 ~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-L----t~~-~~~~~p~~ 381 (429)
T PRK03629 308 AGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-L----TDT-FLDETPSI 381 (429)
T ss_pred CCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-e----CCC-CCCCCceE
Confidence 44555654322222233343344455677889998888765543 357888886543221 1 111 12335789
Q ss_pred CCCCCEEEEEeCCCe---EEEEEccCCeEEEEecccCCceEEEEEeC
Q 017296 307 RPDSKIAATAGWDRR---VRIYNYRKGSALAILKYHHATCNAVSFSS 350 (374)
Q Consensus 307 sp~~~~l~s~~~dg~---v~iwd~~~~~~~~~~~~h~~~v~~v~~sp 350 (374)
+|||++|+.++.++. +.++++ +++....+.+|.+.+...+|+|
T Consensus 382 SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 382 APNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred CCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCC
Confidence 999999998888765 566676 5666667888888888899987
No 222
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.11 E-value=1.8e-09 Score=104.49 Aligned_cols=139 Identities=17% Similarity=0.179 Sum_probs=107.8
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCccC--eEEEE---EecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecC
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEP--VLCLS---IDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLE 297 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~--v~~~~---~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~ 297 (374)
.++.++.++.+-+||.... ..+... .+.+. ..+.. +.++..++++|+.-+.|.+|+.... .... .+..|
T Consensus 101 ~i~l~~~~ns~~i~d~~~~-~~~~~i-~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~d-n~p~---~l~GH 174 (967)
T KOG0974|consen 101 KIALVTSRNSLLIRDSKNS-SVLSKI-QSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHED-NKPI---RLKGH 174 (967)
T ss_pred eEEEEEcCceEEEEecccC-ceehhc-CCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecccc-CCcc---eeccc
Confidence 4677888899999998753 222222 23322 22222 2556667889999999999998732 2222 34568
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEE-EecccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 298 RPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALA-ILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 298 ~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
...+.++.++-||+++++.+.|+++|+|++.+.+... +.-+|+++|+.+.|.|+ +++|+++|.+.++|+.
T Consensus 175 eG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~ 245 (967)
T KOG0974|consen 175 EGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV 245 (967)
T ss_pred CCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEec
Confidence 8889999999999999999999999999999988776 66689999999999998 9999999999999954
No 223
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.10 E-value=3.6e-09 Score=95.57 Aligned_cols=127 Identities=20% Similarity=0.238 Sum_probs=91.1
Q ss_pred EEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEE
Q 017296 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISG 303 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~ 303 (374)
++++++||.|++|.- .+....++-....+|.|+++.|+...++-+-.+. +.+=-+.... -.-..++|..-|.+
T Consensus 119 Llt~GEDG~iKiWSr--sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h-~~IKpL~~n~----k~i~WkAHDGiiL~ 191 (737)
T KOG1524|consen 119 LLTAGEDGVIKIWSR--SGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGH-ISIKPLAANS----KIIRWRAHDGLVLS 191 (737)
T ss_pred eeeecCCceEEEEec--cchHHHHHhhcCceeEEEEECCCCCceEEecCCe-EEEeeccccc----ceeEEeccCcEEEE
Confidence 788999999999974 2444455555678999999988766655543333 3332222111 11235678778999
Q ss_pred EEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEe
Q 017296 304 TSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASAS 359 (374)
Q Consensus 304 ~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s 359 (374)
+.|+|...++++||+|-+.++||-. |..+..-..|+-+|++++|.|| +.++-+|
T Consensus 192 ~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S 245 (737)
T KOG1524|consen 192 LSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWS 245 (737)
T ss_pred eecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeee
Confidence 9999999999999999999999974 6667667778888888888888 5444444
No 224
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.08 E-value=2.1e-10 Score=101.68 Aligned_cols=183 Identities=14% Similarity=0.170 Sum_probs=131.9
Q ss_pred CceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccC
Q 017296 161 PKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (374)
Q Consensus 161 ~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~ 240 (374)
++.+++ |+..|.+-.+|..+.+....+...+..... .|.... .+++..+...+.+||-.
T Consensus 141 Grhlll-gGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv--------------~~LHne-----q~~AVAQK~y~yvYD~~- 199 (545)
T KOG1272|consen 141 GRHLLL-GGRKGHLAAFDWVTKKLHFEINVMETVRDV--------------TFLHNE-----QFFAVAQKKYVYVYDNN- 199 (545)
T ss_pred ccEEEe-cCCccceeeeecccceeeeeeehhhhhhhh--------------hhhcch-----HHHHhhhhceEEEecCC-
Confidence 344444 555688999999998876666533211111 111111 24555678889999853
Q ss_pred CCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCC
Q 017296 241 PGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDR 320 (374)
Q Consensus 241 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg 320 (374)
+..+.-++. ...|..+.|-|-.-.|++++.-|.++--|+.. |..+ .++......+..++-.|-...+-.|...|
T Consensus 200 -GtElHClk~-~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~--GklV--a~~~t~~G~~~vm~qNP~NaVih~GhsnG 273 (545)
T KOG1272|consen 200 -GTELHCLKR-HIRVARLEFLPYHFLLVAASEAGFLKYQDVST--GKLV--ASIRTGAGRTDVMKQNPYNAVIHLGHSNG 273 (545)
T ss_pred -CcEEeehhh-cCchhhhcccchhheeeecccCCceEEEeech--hhhh--HHHHccCCccchhhcCCccceEEEcCCCc
Confidence 443433332 35788888888776678888889999888743 3322 22233334566778888888888999999
Q ss_pred eEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 321 RVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 321 ~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
+|.+|.....+++..+..|.++|.+||+.++|+|+||++.|..|+|||+.
T Consensus 274 tVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR 323 (545)
T KOG1272|consen 274 TVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLR 323 (545)
T ss_pred eEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeec
Confidence 99999998889888888999999999999999999999999999999983
No 225
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=1.1e-09 Score=96.13 Aligned_cols=145 Identities=19% Similarity=0.214 Sum_probs=104.1
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeE
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGIS 302 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~ 302 (374)
.+++|..||++|+|+.... .+......|...|.++.|+|++..+++-+.| ..++|+.+.. .+....+.........
T Consensus 158 ~latgg~dg~lRv~~~Ps~-~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g--~~~a~~t~~~k~~~~~ 233 (398)
T KOG0771|consen 158 KLATGGTDGTLRVWEWPSM-LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTG--AALARKTPFSKDEMFS 233 (398)
T ss_pred EeeeccccceEEEEecCcc-hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccC--chhhhcCCcccchhhh
Confidence 6899999999999996542 3344567799999999999999999999999 9999999754 3333332222233455
Q ss_pred EEEECCCC-----CEEEEEeCCCeEEEEEccCC---eEEE--EecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCC
Q 017296 303 GTSIRPDS-----KIAATAGWDRRVRIYNYRKG---SALA--ILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 303 ~~~~sp~~-----~~l~s~~~dg~v~iwd~~~~---~~~~--~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~ 371 (374)
.+.|+.|+ ++.++...-+.|+.||+..- ..+. +.-.-.+.|++++.++||+++|-|+.||.|-|++...
T Consensus 234 ~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~ 312 (398)
T KOG0771|consen 234 SCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKS 312 (398)
T ss_pred hceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEece
Confidence 67788776 44455555567777766321 1111 1112235899999999999999999999999998754
No 226
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.06 E-value=1.9e-08 Score=86.85 Aligned_cols=178 Identities=16% Similarity=0.196 Sum_probs=111.9
Q ss_pred EEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCC-
Q 017296 165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGI- 243 (374)
Q Consensus 165 ~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~- 243 (374)
++++..|..|+++|-.. ++...+... .+-+..|++ +.|. +...++.|+.. .|.+|....+..
T Consensus 113 fava~nddvVriy~kss-t~pt~Lks~---------sQrnvtcla---wRPl---saselavgCr~-gIciW~~s~tln~ 175 (445)
T KOG2139|consen 113 FAVATNDDVVRIYDKSS-TCPTKLKSV---------SQRNVTCLA---WRPL---SASELAVGCRA-GICIWSDSRTLNA 175 (445)
T ss_pred hhhhccCcEEEEeccCC-CCCceecch---------hhcceeEEE---eccC---Ccceeeeeecc-eeEEEEcCccccc
Confidence 34555677999998765 333333211 111222322 3332 22356777754 599998743211
Q ss_pred ----------ceee--eecCccCeEEEEEecCCCceEEEec-CCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCC
Q 017296 244 ----------PLTA--MKVHLEPVLCLSIDESCNGGISGGA-DQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDS 310 (374)
Q Consensus 244 ----------~~~~--~~~h~~~v~~~~~~~~~~~~~s~s~-D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 310 (374)
..+. ..+| .+|+.|.+.+++..++++|. |..|++||.+.++...... ....+++-+.||||+
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~----~glgg~slLkwSPdg 250 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIP----KGLGGFSLLKWSPDG 250 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccc----cCCCceeeEEEcCCC
Confidence 1111 2334 69999999999999999886 5799999997665443321 123568889999999
Q ss_pred CEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEE-EEEeCCCcE
Q 017296 311 KIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLM-ASASEDSTV 364 (374)
Q Consensus 311 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l-as~s~D~~v 364 (374)
.++.++.-|+..++|+.....--....--.+.|....|+|+|++| ++.+...++
T Consensus 251 d~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~l 305 (445)
T KOG2139|consen 251 DVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRL 305 (445)
T ss_pred CEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceE
Confidence 999999999999999654322111122234489999999999954 555544433
No 227
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.05 E-value=8.8e-08 Score=87.49 Aligned_cols=172 Identities=17% Similarity=0.253 Sum_probs=115.0
Q ss_pred eEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeee---
Q 017296 173 EVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK--- 249 (374)
Q Consensus 173 ~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~--- 249 (374)
.|.=.+|+.|+-+..+.... +...++.+ . ....++++|+.+|.|.+||.+... .+.++.
T Consensus 156 evYRlNLEqGrfL~P~~~~~----------~~lN~v~i---n----~~hgLla~Gt~~g~VEfwDpR~ks-rv~~l~~~~ 217 (703)
T KOG2321|consen 156 EVYRLNLEQGRFLNPFETDS----------GELNVVSI---N----EEHGLLACGTEDGVVEFWDPRDKS-RVGTLDAAS 217 (703)
T ss_pred ceEEEEcccccccccccccc----------ccceeeee---c----CccceEEecccCceEEEecchhhh-hheeeeccc
Confidence 46666888887766653210 11112221 1 122368889999999999998642 222221
Q ss_pred ---cCc-----cCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCC--CCEEEEEeCC
Q 017296 250 ---VHL-----EPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPD--SKIAATAGWD 319 (374)
Q Consensus 250 ---~h~-----~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~s~~~d 319 (374)
.|. ..|+++.|..++..++.|...|.+.+||++..+. .+..... ....|..+.|-+. +..|+| ...
T Consensus 218 ~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p--l~~kdh~-~e~pi~~l~~~~~~~q~~v~S-~Dk 293 (703)
T KOG2321|consen 218 SVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP--LLVKDHG-YELPIKKLDWQDTDQQNKVVS-MDK 293 (703)
T ss_pred ccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc--eeecccC-CccceeeecccccCCCceEEe-cch
Confidence 222 2499999988888999999999999999986543 2222211 1234677777654 444554 446
Q ss_pred CeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEe
Q 017296 320 RRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALW 367 (374)
Q Consensus 320 g~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W 367 (374)
..++|||-.+|+.+..+. ....++.+.+-|++-++++|-++.-+..+
T Consensus 294 ~~~kiWd~~~Gk~~asiE-pt~~lND~C~~p~sGm~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 294 RILKIWDECTGKPMASIE-PTSDLNDFCFVPGSGMFFTANESSKMHTY 340 (703)
T ss_pred HHhhhcccccCCceeecc-ccCCcCceeeecCCceEEEecCCCcceeE
Confidence 789999999999988775 45568889999999999998877665543
No 228
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.03 E-value=6.4e-10 Score=66.53 Aligned_cols=38 Identities=29% Similarity=0.711 Sum_probs=36.5
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEe
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWD 46 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd 46 (374)
+++.++++|+++|++|+|+|++.+|+|++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 47889999999999999999999999999999999997
No 229
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.02 E-value=7.7e-08 Score=90.44 Aligned_cols=90 Identities=11% Similarity=-0.002 Sum_probs=57.7
Q ss_pred eEEEEEecCCCceEEEecCC---eEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCC-e--EEEEEcc
Q 017296 255 VLCLSIDESCNGGISGGADQ---KIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDR-R--VRIYNYR 328 (374)
Q Consensus 255 v~~~~~~~~~~~~~s~s~D~---~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg-~--v~iwd~~ 328 (374)
.....++|++..++..+.++ .|.+||++....... .. ........|+||+++|+.++.++ . +.+-++
T Consensus 330 ~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~l-----t~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~- 402 (427)
T PRK02889 330 NTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTAL-----TD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS- 402 (427)
T ss_pred cCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEc-----cC-CCCccCceECCCCCEEEEEEecCCCEEEEEEEC-
Confidence 33567888888887766554 699999875432211 11 12235678999999987666544 3 333344
Q ss_pred CCeEEEEecccCCceEEEEEeCC
Q 017296 329 KGSALAILKYHHATCNAVSFSSD 351 (374)
Q Consensus 329 ~~~~~~~~~~h~~~v~~v~~sp~ 351 (374)
+++....+..+.+.+...+|+|-
T Consensus 403 ~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 403 DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CCCceEEeecCCCCCCCCccCCC
Confidence 45555566667777777888873
No 230
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.02 E-value=8.7e-06 Score=74.39 Aligned_cols=206 Identities=15% Similarity=0.212 Sum_probs=118.6
Q ss_pred CCceEEEcccCCCeEEEEecCCC-ceeEE--eccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEE
Q 017296 160 GPKYMAVAGEQLSEVEIWDLNTA-ERCTR--LHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVW 236 (374)
Q Consensus 160 ~~~~~~~~~~~d~~i~vWd~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iw 236 (374)
++++++++--.++.+.++++... ..... ....... .+....+.....-.+ .+.| .+...+++--....|.+|
T Consensus 97 ~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~-g~~~~rq~~~h~H~v-~~~p---dg~~v~v~dlG~D~v~~~ 171 (345)
T PF10282_consen 97 DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGS-GPNPDRQEGPHPHQV-VFSP---DGRFVYVPDLGADRVYVY 171 (345)
T ss_dssp TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEE-ESSTTTTSSTCEEEE-EE-T---TSSEEEEEETTTTEEEEE
T ss_pred CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCC-CCcccccccccceeE-EECC---CCCEEEEEecCCCEEEEE
Confidence 34667777667889999999874 32221 1110000 000000011111111 2333 233344555556789999
Q ss_pred eccCCCCcee---eee-cCccCeEEEEEecCCCceE-EEecCCeEEEEEcCCCCCeEEEEEeeec-----C-CCCeEEEE
Q 017296 237 DIRNPGIPLT---AMK-VHLEPVLCLSIDESCNGGI-SGGADQKIVLYNLDHSTGSCVIKKEINL-----E-RPGISGTS 305 (374)
Q Consensus 237 dl~~~~~~~~---~~~-~h~~~v~~~~~~~~~~~~~-s~s~D~~i~lwd~~~~~~~~~~~~~~~~-----~-~~~v~~~~ 305 (374)
++......+. .++ ......+.+.|++++..++ ..-.+++|.+++++..++.......... . ......++
T Consensus 172 ~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ 251 (345)
T PF10282_consen 172 DIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIA 251 (345)
T ss_dssp EE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEE
T ss_pred EEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEE
Confidence 9975432222 122 2345678899999987764 5566889999999855555443332221 1 12577899
Q ss_pred ECCCCCEEEEEe-CCCeEEEEEccC--C--eEEEEecccCCceEEEEEeCCCCEEEEEe-CCCcEEEecCC
Q 017296 306 IRPDSKIAATAG-WDRRVRIYNYRK--G--SALAILKYHHATCNAVSFSSDCKLMASAS-EDSTVALWELY 370 (374)
Q Consensus 306 ~sp~~~~l~s~~-~dg~v~iwd~~~--~--~~~~~~~~h~~~v~~v~~sp~~~~las~s-~D~~v~~W~~~ 370 (374)
++||+++|..+. ...+|.+|++.. + +.+..+.........++++|+|++|+.+. .++.|.+|+++
T Consensus 252 ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 252 ISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp E-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 999999876554 578999999932 3 33344443344578999999999887664 67799999874
No 231
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.01 E-value=4e-09 Score=107.22 Aligned_cols=132 Identities=12% Similarity=0.225 Sum_probs=100.8
Q ss_pred EEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEE---ecCCeEEEEEcCCCCCeEEEEEeeecCCCC
Q 017296 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISG---GADQKIVLYNLDHSTGSCVIKKEINLERPG 300 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~---s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~ 300 (374)
+..+..||.+-+|... .++...-+.|........|-.. .++++ +.++.+.+||.......... ..+|..+
T Consensus 2266 ~~i~d~dg~l~l~q~~--pk~~~s~qchnk~~~Df~Fi~s--~~~tag~s~d~~n~~lwDtl~~~~~s~v---~~~H~~g 2338 (2439)
T KOG1064|consen 2266 FGIVDGDGDLSLWQAS--PKPYTSWQCHNKALSDFRFIGS--LLATAGRSSDNRNVCLWDTLLPPMNSLV---HTCHDGG 2338 (2439)
T ss_pred eeeeccCCceeecccC--CcceeccccCCccccceeeeeh--hhhccccCCCCCcccchhcccCccccee---eeecCCC
Confidence 5556679999999885 4567778889888888888553 23554 35789999997544332222 2678889
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 301 ISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 301 v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
++.+++-|..++++|||.+|.|++||++..+...+++. +. ...++++++..|+++||++..+
T Consensus 2339 aT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2339 ATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred ceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEcccc
Confidence 99999999999999999999999999986665544443 33 4568999999999999999654
No 232
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.00 E-value=1.1e-07 Score=89.54 Aligned_cols=109 Identities=9% Similarity=0.014 Sum_probs=65.2
Q ss_pred EEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCC---eEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCC
Q 017296 233 ILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQ---KIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPD 309 (374)
Q Consensus 233 i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~---~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 309 (374)
|.++|+.... ...+..+........++|++..++..+.++ .|.+||++..... . +. +........|+||
T Consensus 318 iy~~dl~~g~--~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~----Lt-~~~~~~~p~~spd 389 (433)
T PRK04922 318 IYRVAASGGS--AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-T----LT-PGSLDESPSFAPN 389 (433)
T ss_pred EEEEECCCCC--eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-E----CC-CCCCCCCceECCC
Confidence 4445554322 222333333445678899998887655433 6899998654322 1 11 1122345689999
Q ss_pred CCEEEEEeCC---CeEEEEEccCCeEEEEecccCCceEEEEEeC
Q 017296 310 SKIAATAGWD---RRVRIYNYRKGSALAILKYHHATCNAVSFSS 350 (374)
Q Consensus 310 ~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp 350 (374)
|++|+..+.+ +.+.++++. ++....+..+.+.+...+|+|
T Consensus 390 G~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 390 GSMVLYATREGGRGVLAAVSTD-GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CCEEEEEEecCCceEEEEEECC-CCceEEcccCCCCCCCCccCC
Confidence 9987765543 357777774 444555666666777778877
No 233
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.99 E-value=7e-06 Score=73.86 Aligned_cols=268 Identities=14% Similarity=0.093 Sum_probs=143.6
Q ss_pred CcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeee-cc---------ccCeEEEEecCCCCCCCCCceeeeec
Q 017296 40 GELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVIS-QG---------RDGTVKCWDIENGGLSSNPSLTIKTN 109 (374)
Q Consensus 40 ~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-~~---------~D~~vrvwd~~~~~~~~~~~~~~~~~ 109 (374)
++|.|-|..+++.+..+......+. + +++ |++.++. .+ .+..|.+||+.+++...+ +
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~---~-~sp--Dg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~----i--- 93 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP---V-VAS--DGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIAD----I--- 93 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce---e-ECC--CCCEEEEEeccccccccCCCCCEEEEEECccCcEEeE----E---
Confidence 8999999998887776654433332 2 444 4555543 44 588999999998753211 0
Q ss_pred ceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccC-CCeEEEEecCCCceeEEe
Q 017296 110 SYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ-LSEVEIWDLNTAERCTRL 188 (374)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~i~vWd~~~~~~~~~~ 188 (374)
.+-.+|..... ..+. .. .+ .++++++.++-.. ++.|-+.|+++++.+..+
T Consensus 94 -------~~p~~p~~~~~----------~~~~-~~----------~l-s~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei 144 (352)
T TIGR02658 94 -------ELPEGPRFLVG----------TYPW-MT----------SL-TPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMM 144 (352)
T ss_pred -------ccCCCchhhcc----------Cccc-eE----------EE-CCCCCEEEEecCCCCCEEEEEECCCCcEEEEE
Confidence 00000010000 0000 00 01 2334555555534 789999999999988877
Q ss_pred ccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCcee-eee-cCc--cCeEEE-EEec-
Q 017296 189 HQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT-AMK-VHL--EPVLCL-SIDE- 262 (374)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~-~~~-~h~--~~v~~~-~~~~- 262 (374)
.-+.| .. + +. ..+. ...+-+.||......+...++... ... .+. .++..- .+.+
T Consensus 145 ~vp~~----------~~----v--y~-t~e~---~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~ 204 (352)
T TIGR02658 145 DVPDC----------YH----I--FP-TAND---TFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNK 204 (352)
T ss_pred eCCCC----------cE----E--EE-ecCC---ccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcC
Confidence 53211 10 0 00 0001 112233455555444433222110 000 011 111110 2233
Q ss_pred CCCceEEEecCCeEEEEEcCCCCCeEEEEEe-e-------ecCCCCeEEEEECCCCCEEEEEe----------CCCeEEE
Q 017296 263 SCNGGISGGADQKIVLYNLDHSTGSCVIKKE-I-------NLERPGISGTSIRPDSKIAATAG----------WDRRVRI 324 (374)
Q Consensus 263 ~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~-~-------~~~~~~v~~~~~sp~~~~l~s~~----------~dg~v~i 324 (374)
++..+.... .|+|.+-|+....-....... . ...-.+..-++++|+++.+..+. ..+.|.+
T Consensus 205 dg~~~~vs~-eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~V 283 (352)
T TIGR02658 205 SGRLVWPTY-TGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFV 283 (352)
T ss_pred CCcEEEEec-CCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEE
Confidence 454444433 399999997543221111101 0 11112344599999998876532 1258999
Q ss_pred EEccCCeEEEEecccCCceEEEEEeCCCC-EEEEEe-CCCcEEEecCCC
Q 017296 325 YNYRKGSALAILKYHHATCNAVSFSSDCK-LMASAS-EDSTVALWELYP 371 (374)
Q Consensus 325 wd~~~~~~~~~~~~h~~~v~~v~~sp~~~-~las~s-~D~~v~~W~~~~ 371 (374)
+|..+++.+..+.- ...++.++++||++ +|.... .++.|.+.|...
T Consensus 284 iD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t 331 (352)
T TIGR02658 284 VDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAET 331 (352)
T ss_pred EECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcC
Confidence 99999999988763 45789999999999 777655 688899998754
No 234
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.97 E-value=9.7e-08 Score=89.78 Aligned_cols=179 Identities=16% Similarity=0.150 Sum_probs=105.1
Q ss_pred ceEEEcccC--CCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEecc
Q 017296 162 KYMAVAGEQ--LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239 (374)
Q Consensus 162 ~~~~~~~~~--d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~ 239 (374)
+.++++... ...|.+||+.+++......... ... . ..+.++ +...+++.+.+|...||.+.
T Consensus 208 ~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g-----------~~~--~-~~~SPD---G~~la~~~~~~g~~~Iy~~d 270 (427)
T PRK02889 208 TKLAYVSFESKKPVVYVHDLATGRRRVVANFKG-----------SNS--A-PAWSPD---GRTLAVALSRDGNSQIYTVN 270 (427)
T ss_pred CEEEEEEccCCCcEEEEEECCCCCEEEeecCCC-----------Ccc--c-eEECCC---CCEEEEEEccCCCceEEEEE
Confidence 444444332 3469999999886432211100 000 0 123332 33334466778888888764
Q ss_pred CCCCceeeeecCccCeEEEEEecCCCceEEEec-CCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeC
Q 017296 240 NPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA-DQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGW 318 (374)
Q Consensus 240 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~-D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~ 318 (374)
........+..+........|+|++..++..+. ++...+|.++..++.... +..+.......+|||||++|+..+.
T Consensus 271 ~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~---lt~~g~~~~~~~~SpDG~~Ia~~s~ 347 (427)
T PRK02889 271 ADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR---VTFTGSYNTSPRISPDGKLLAYISR 347 (427)
T ss_pred CCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE---EecCCCCcCceEECCCCCEEEEEEc
Confidence 333334455555555566789999988876654 567788876533332211 1112222345789999999987765
Q ss_pred CC---eEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCC
Q 017296 319 DR---RVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDS 362 (374)
Q Consensus 319 dg---~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~ 362 (374)
++ .|.+||+.+++.. .+..+ .......|+|||+.|+.++.++
T Consensus 348 ~~g~~~I~v~d~~~g~~~-~lt~~-~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 348 VGGAFKLYVQDLATGQVT-ALTDT-TRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred cCCcEEEEEEECCCCCeE-EccCC-CCccCceECCCCCEEEEEEecC
Confidence 54 6999999877643 33322 2346779999999887766544
No 235
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.97 E-value=2.4e-09 Score=63.99 Aligned_cols=39 Identities=28% Similarity=0.647 Sum_probs=36.7
Q ss_pred CeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEec
Q 017296 330 GSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWE 368 (374)
Q Consensus 330 ~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~ 368 (374)
++++.++++|.+.|.+++|+|++.+|+|++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 367789999999999999999999999999999999997
No 236
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=2.4e-06 Score=78.12 Aligned_cols=129 Identities=14% Similarity=0.219 Sum_probs=88.9
Q ss_pred CcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEe--cCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECC
Q 017296 231 GSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG--ADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP 308 (374)
Q Consensus 231 g~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s--~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp 308 (374)
.++.+.++.. ......+ --.+||.++.+++++..++..- --..+.++|++.. .+ +......-..+-|+|
T Consensus 251 q~Lyll~t~g-~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~---~v----~df~egpRN~~~fnp 321 (566)
T KOG2315|consen 251 QTLYLLATQG-ESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK---PV----FDFPEGPRNTAFFNP 321 (566)
T ss_pred ceEEEEEecC-ceEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC---Ee----EeCCCCCccceEECC
Confidence 3566666541 1112112 1367999999999887665432 2457888888642 11 222334456789999
Q ss_pred CCCEEEEEeCC---CeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEe------CCCcEEEecCC
Q 017296 309 DSKIAATAGWD---RRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASAS------EDSTVALWELY 370 (374)
Q Consensus 309 ~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s------~D~~v~~W~~~ 370 (374)
.|++|+-+|.+ |.|.|||+.+.+.+..+..-. .+-.+|+|||+++.|+. -|+-++||+++
T Consensus 322 ~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 322 HGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred CCCEEEEeecCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 99999888864 889999999988887765332 34469999999988764 58999999874
No 237
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.96 E-value=7.2e-07 Score=84.24 Aligned_cols=128 Identities=13% Similarity=0.087 Sum_probs=79.9
Q ss_pred EEEEecCCc--EEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEec-CC--eEEEEEcCCCCCeEEEEEeeecCC
Q 017296 224 VLAGYEDGS--ILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA-DQ--KIVLYNLDHSTGSCVIKKEINLER 298 (374)
Q Consensus 224 ~~~gs~dg~--i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~-D~--~i~lwd~~~~~~~~~~~~~~~~~~ 298 (374)
+++.+.++. |.+||++.. ....+..+........++|++..++..+. ++ .|.++|++...... +....
T Consensus 261 a~~~~~~g~~~Iy~~d~~~~--~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-----lt~~~ 333 (435)
T PRK05137 261 VMSLSQGGNTDIYTMDLRSG--TTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-----ISFGG 333 (435)
T ss_pred EEEEecCCCceEEEEECCCC--ceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-----eecCC
Confidence 344555555 666677643 34455556656677889999988877664 33 57777775432221 11122
Q ss_pred CCeEEEEECCCCCEEEEEeCC---CeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeC
Q 017296 299 PGISGTSIRPDSKIAATAGWD---RRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASE 360 (374)
Q Consensus 299 ~~v~~~~~sp~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~ 360 (374)
.......|+|||+.|+....+ ..|.+||+..+. ...+. +...+....|+|||+.|+..+.
T Consensus 334 ~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt-~~~~~~~p~~spDG~~i~~~~~ 396 (435)
T PRK05137 334 GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILT-SGFLVEGPTWAPNGRVIMFFRQ 396 (435)
T ss_pred CcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEecc-CCCCCCCCeECCCCCEEEEEEc
Confidence 335567899999998866543 368888875443 33333 2335677899999998876554
No 238
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.95 E-value=6.4e-09 Score=105.82 Aligned_cols=229 Identities=14% Similarity=0.229 Sum_probs=147.2
Q ss_pred EEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEE
Q 017296 12 AVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCW 91 (374)
Q Consensus 12 ~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvw 91 (374)
.+++-|-..|.++.-+|...+-+||+.||.|++|....++.+..+..-.. ..+..+.|+. .|+.+..+-.||.+-+|
T Consensus 2202 ~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~--qGnk~~i~d~dg~l~l~ 2278 (2439)
T KOG1064|consen 2202 VMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNH--QGNKFGIVDGDGDLSLW 2278 (2439)
T ss_pred eEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhcc--cCCceeeeccCCceeec
Confidence 34556778888888899999999999999999999988887766543333 4567777776 56788888889999999
Q ss_pred ecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCC
Q 017296 92 DIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQL 171 (374)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 171 (374)
.+.- + |.. .. +|+.... ..+.+++ +
T Consensus 2279 q~~p-k----~~~---------------s~---------------------------qchnk~~-----~Df~Fi~-s-- 2303 (2439)
T KOG1064|consen 2279 QASP-K----PYT---------------SW---------------------------QCHNKAL-----SDFRFIG-S-- 2303 (2439)
T ss_pred ccCC-c----cee---------------cc---------------------------ccCCccc-----cceeeee-h--
Confidence 9851 1 000 00 0000000 0000100 0
Q ss_pred CeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEE---EEecCCcEEEEeccCCCCceeee
Q 017296 172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVL---AGYEDGSILVWDIRNPGIPLTAM 248 (374)
Q Consensus 172 ~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~gs~dg~i~iwdl~~~~~~~~~~ 248 (374)
.++ ..++++.+.+||.-.+...-...
T Consensus 2304 ---------------------------------------------------~~~tag~s~d~~n~~lwDtl~~~~~s~v~ 2332 (2439)
T KOG1064|consen 2304 ---------------------------------------------------LLATAGRSSDNRNVCLWDTLLPPMNSLVH 2332 (2439)
T ss_pred ---------------------------------------------------hhhccccCCCCCcccchhcccCcccceee
Confidence 011 12346778888865444332333
Q ss_pred ecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcc
Q 017296 249 KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYR 328 (374)
Q Consensus 249 ~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~ 328 (374)
+.|.+.++++.+-|+...+++||.+|.|++||++..+-.+.+. . +. ...++++|+..|.++||++.
T Consensus 2333 ~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~---------~----~~-~~~~f~~~ss~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2333 TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQ---------A----LD-TREYFVTGSSEGNIKIWRLS 2398 (2439)
T ss_pred eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhh---------h----hh-hhheeeccCcccceEEEEcc
Confidence 7899999999999998999999999999999996433222111 0 22 35589999999999999998
Q ss_pred CCeEEEEecc-cC--C--ceEEEE-EeCCCCEEEEEeCCCc
Q 017296 329 KGSALAILKY-HH--A--TCNAVS-FSSDCKLMASASEDST 363 (374)
Q Consensus 329 ~~~~~~~~~~-h~--~--~v~~v~-~sp~~~~las~s~D~~ 363 (374)
....++++.. |. + .+.... +--.+..|++++.|++
T Consensus 2399 ~~~ll~~~p~e~ak~gfFr~~g~Q~~v~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2399 EFGLLHTFPSEHAKQGFFRNIGMQINVGQCNRIFSCGADGT 2439 (2439)
T ss_pred ccchhhcCchhhcccchhhhcCceeeeccCceEEEecCCCC
Confidence 8776665542 21 1 011111 1112346778888874
No 239
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.95 E-value=1.5e-08 Score=83.93 Aligned_cols=58 Identities=24% Similarity=0.306 Sum_probs=53.6
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEc
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNL 281 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~ 281 (374)
.+++++.||.||+|..++ ..|+..++.|...|++++|+|+....|++|.|++|.||++
T Consensus 265 IlATAGWD~RiRVyswrt-l~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 265 ILATAGWDHRIRVYSWRT-LNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEeecccCCcEEEEEecc-CCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 578899999999999987 5788999999999999999999888899999999999986
No 240
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.93 E-value=2.5e-08 Score=86.18 Aligned_cols=143 Identities=15% Similarity=0.242 Sum_probs=104.1
Q ss_pred EEEEecCCcEEEEeccCCCCceeeee-cCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEE----------EEE
Q 017296 224 VLAGYEDGSILVWDIRNPGIPLTAMK-VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCV----------IKK 292 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~----------~~~ 292 (374)
++++..|-.|++||-.. .. ...++ .-...|+|+++-|.+...++-+..+-|.+|..+....... ...
T Consensus 113 fava~nddvVriy~kss-t~-pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl 190 (445)
T KOG2139|consen 113 FAVATNDDVVRIYDKSS-TC-PTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVL 190 (445)
T ss_pred hhhhccCcEEEEeccCC-CC-CceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccccccccccchhhe
Confidence 67788899999999654 33 23343 2456899999988776666666677799998753211000 001
Q ss_pred eeecCCCCeEEEEECCCCCEEEEEeC-CCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 293 EINLERPGISGTSIRPDSKIAATAGW-DRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 293 ~~~~~~~~v~~~~~sp~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
....| ..|+++.+.+||..+++++. |..|.|||..++..+-......+.++-+.|||||.+|+.+.-|+.-++|+.
T Consensus 191 ~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e 267 (445)
T KOG2139|consen 191 QDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQE 267 (445)
T ss_pred eCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehh
Confidence 11122 45899999999999998885 678999999887655433345567888999999999999999999999964
No 241
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.92 E-value=1e-07 Score=79.19 Aligned_cols=102 Identities=17% Similarity=0.295 Sum_probs=74.7
Q ss_pred EEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecC---CeEEEEEcCCCCCeEEEEEeeecCCCC
Q 017296 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD---QKIVLYNLDHSTGSCVIKKEINLERPG 300 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D---~~i~lwd~~~~~~~~~~~~~~~~~~~~ 300 (374)
++.|..++.|.+||++ ..++..+ +..+++.+.|+|.+..++.++.+ |.+.+||++.. ... .. .+...
T Consensus 76 vi~g~~~~~v~lyd~~--~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~--~~i--~~--~~~~~ 145 (194)
T PF08662_consen 76 VIYGSMPAKVTLYDVK--GKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK--KKI--ST--FEHSD 145 (194)
T ss_pred EEEccCCcccEEEcCc--ccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC--EEe--ec--cccCc
Confidence 3446678899999996 2334333 56788899999999999988754 67999999732 222 11 22345
Q ss_pred eEEEEECCCCCEEEEEeC------CCeEEEEEccCCeEEEEe
Q 017296 301 ISGTSIRPDSKIAATAGW------DRRVRIYNYRKGSALAIL 336 (374)
Q Consensus 301 v~~~~~sp~~~~l~s~~~------dg~v~iwd~~~~~~~~~~ 336 (374)
+..++|+|||++++++.. |..++||+. .|+.+...
T Consensus 146 ~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~ 186 (194)
T PF08662_consen 146 ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLLYKK 186 (194)
T ss_pred EEEEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEeEec
Confidence 789999999999998774 788999998 47766543
No 242
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.88 E-value=3.7e-08 Score=86.20 Aligned_cols=144 Identities=19% Similarity=0.220 Sum_probs=93.0
Q ss_pred EEEEEecCCcEEEEeccCCCCcee---eeecC--ccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecC
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLT---AMKVH--LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLE 297 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~---~~~~h--~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~ 297 (374)
.++.+..+....+++++....... ..... ...+..+..+......-.++....+.+|+.... .+. .+-+|
T Consensus 76 llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~--~~~---~~lGh 150 (390)
T KOG3914|consen 76 LVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG--RCE---PILGH 150 (390)
T ss_pred EEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeeccccc--Ccc---hhhhh
Confidence 466677777777777765332111 11111 112222333333222234556667777766532 111 12346
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEe-cccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 298 RPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAIL-KYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 298 ~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~-~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
-+.++.++++||+++|+++..|..||+-.......+..+ .||++.|..++.-+ ++.|+|+|.|++|++||+..+
T Consensus 151 vSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-~~~LlS~sGD~tlr~Wd~~sg 225 (390)
T KOG3914|consen 151 VSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-NYLLLSGSGDKTLRLWDITSG 225 (390)
T ss_pred hhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc-CceeeecCCCCcEEEEecccC
Confidence 677899999999999999999999999766544444444 47999999999865 467999999999999998643
No 243
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.88 E-value=9.6e-07 Score=83.39 Aligned_cols=109 Identities=6% Similarity=-0.019 Sum_probs=63.9
Q ss_pred cEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecC---CeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECC
Q 017296 232 SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD---QKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP 308 (374)
Q Consensus 232 ~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D---~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp 308 (374)
.|.+||+... ..+.+..+...+....++|++..++..+.+ ..|.+||++... ...+ . ....+....|+|
T Consensus 315 ~Iy~~d~~g~--~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~l----t-~~~~~~~p~~sp 386 (435)
T PRK05137 315 QLYVMNADGS--NPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERIL----T-SGFLVEGPTWAP 386 (435)
T ss_pred eEEEEECCCC--CeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEec----c-CCCCCCCCeECC
Confidence 5667776532 233343344455667889999888766543 367888875432 1111 1 112356789999
Q ss_pred CCCEEEEEeCC------CeEEEEEccCCeEEEEecccCCceEEEEEeC
Q 017296 309 DSKIAATAGWD------RRVRIYNYRKGSALAILKYHHATCNAVSFSS 350 (374)
Q Consensus 309 ~~~~l~s~~~d------g~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp 350 (374)
||+.|+..+.+ ..+.+.|+..++. ..+. ..+.+...+|+|
T Consensus 387 DG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 387 NGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP-TPGDASDPAWSP 432 (435)
T ss_pred CCCEEEEEEccCCCCCcceEEEEECCCCce-EEcc-CCCCccCcccCC
Confidence 99988765543 2466777755443 3444 344566667776
No 244
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.86 E-value=7.9e-07 Score=83.64 Aligned_cols=139 Identities=11% Similarity=0.097 Sum_probs=87.3
Q ss_pred EEEEecCC--cEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecC-CeEEEEEcCCCCCeEEEEEeeecCCCC
Q 017296 224 VLAGYEDG--SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD-QKIVLYNLDHSTGSCVIKKEINLERPG 300 (374)
Q Consensus 224 ~~~gs~dg--~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D-~~i~lwd~~~~~~~~~~~~~~~~~~~~ 300 (374)
+++.+.+| .|.+||++.. . ...+..+...+....|+|++..++..+.+ +...+|.++..++... .+......
T Consensus 258 a~~~~~~g~~~I~~~d~~tg-~-~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~---~lt~~~~~ 332 (429)
T PRK03629 258 AFALSKTGSLNLYVMDLASG-Q-IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ---RITWEGSQ 332 (429)
T ss_pred EEEEcCCCCcEEEEEECCCC-C-EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE---EeecCCCC
Confidence 33444444 5888998653 2 33444445567788999999888777654 5556665433322211 11222233
Q ss_pred eEEEEECCCCCEEEEEeCC---CeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCc---EEEecC
Q 017296 301 ISGTSIRPDSKIAATAGWD---RRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDST---VALWEL 369 (374)
Q Consensus 301 v~~~~~sp~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~---v~~W~~ 369 (374)
.....|+|||++|+..+.+ ..|.+||+.+++.. .+... .......|+|||++|+.++.|+. +.+|++
T Consensus 333 ~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~ 405 (429)
T PRK03629 333 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVST 405 (429)
T ss_pred ccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEEC
Confidence 4568899999998776543 35888999877643 33321 22345789999999999888875 555655
No 245
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.85 E-value=1.6e-05 Score=72.74 Aligned_cols=284 Identities=13% Similarity=0.152 Sum_probs=147.4
Q ss_pred ceeEEEEeCCCCEEEEecC----CCcEEEEeCccc--ce--eeeeeeeeceeeeEEeccCCccccceeeec-cccCeEEE
Q 017296 20 SVTDVCFHQTKPILFAGTT----GGELRIWDTVQH--RT--VSSSWVHSAAHGIVSVATGPSIGLNKVISQ-GRDGTVKC 90 (374)
Q Consensus 20 ~V~~l~~~~~~~~l~s~s~----D~~v~vWd~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-~~D~~vrv 90 (374)
.-..|++++++++|++..+ ++.|..|..... +. +.... .....-.-++.++ +++.|+.+ ..+++|.+
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~--~~g~~p~~i~~~~--~g~~l~vany~~g~v~v 113 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVP--SGGSSPCHIAVDP--DGRFLYVANYGGGSVSV 113 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEE--ESSSCEEEEEECT--TSSEEEEEETTTTEEEE
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeec--cCCCCcEEEEEec--CCCEEEEEEccCCeEEE
Confidence 3356899999999998876 468888887643 22 22211 1111112234444 55666655 46899999
Q ss_pred EecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccC
Q 017296 91 WDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQ 170 (374)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (374)
+++..... +.......... ...+.. ..+.....++. .+ .+++++++++...
T Consensus 114 ~~l~~~g~-----l~~~~~~~~~~----g~g~~~-~rq~~~h~H~v------------------~~-~pdg~~v~v~dlG 164 (345)
T PF10282_consen 114 FPLDDDGS-----LGEVVQTVRHE----GSGPNP-DRQEGPHPHQV------------------VF-SPDGRFVYVPDLG 164 (345)
T ss_dssp EEECTTSE-----EEEEEEEEESE----EEESST-TTTSSTCEEEE------------------EE--TTSSEEEEEETT
T ss_pred EEccCCcc-----cceeeeecccC----CCCCcc-cccccccceeE------------------EE-CCCCCEEEEEecC
Confidence 99976311 11000000000 000000 00000000000 01 2334555555544
Q ss_pred CCeEEEEecCCCce-eEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeee
Q 017296 171 LSEVEIWDLNTAER-CTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMK 249 (374)
Q Consensus 171 d~~i~vWd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~ 249 (374)
...|.+|++..... +.....-... .+ ...+.+ .|.++ +....++.-.+++|.+|++......+...+
T Consensus 165 ~D~v~~~~~~~~~~~l~~~~~~~~~--~G--~GPRh~-----~f~pd---g~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~ 232 (345)
T PF10282_consen 165 ADRVYVYDIDDDTGKLTPVDSIKVP--PG--SGPRHL-----AFSPD---GKYAYVVNELSNTVSVFDYDPSDGSLTEIQ 232 (345)
T ss_dssp TTEEEEEEE-TTS-TEEEEEEEECS--TT--SSEEEE-----EE-TT---SSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred CCEEEEEEEeCCCceEEEeeccccc--cC--CCCcEE-----EEcCC---cCEEEEecCCCCcEEEEeecccCCceeEEE
Confidence 56899999876551 2221100000 00 001111 23332 333455667788999999872221221111
Q ss_pred -------cC--ccCeEEEEEecCCCceEE-EecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEe-C
Q 017296 250 -------VH--LEPVLCLSIDESCNGGIS-GGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAG-W 318 (374)
Q Consensus 250 -------~h--~~~v~~~~~~~~~~~~~s-~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~-~ 318 (374)
.. ......+.++|+++.++. ....++|.+++++..++..............-+.++|+|++++|+.++ .
T Consensus 233 ~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~ 312 (345)
T PF10282_consen 233 TISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQD 312 (345)
T ss_dssp EEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETT
T ss_pred EeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecC
Confidence 11 125777889999987754 456789999999766666655555554445578999999999988777 5
Q ss_pred CCeEEEEEcc--CCeEEEEec-ccCCceEEEEE
Q 017296 319 DRRVRIYNYR--KGSALAILK-YHHATCNAVSF 348 (374)
Q Consensus 319 dg~v~iwd~~--~~~~~~~~~-~h~~~v~~v~~ 348 (374)
+++|.+|++. +|+....-. .......||.|
T Consensus 313 s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 313 SNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp TTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred CCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 6799999774 555333221 12345566665
No 246
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.84 E-value=4.7e-08 Score=91.70 Aligned_cols=143 Identities=20% Similarity=0.281 Sum_probs=94.9
Q ss_pred EEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecC-CCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeE
Q 017296 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDES-CNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGIS 302 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~ 302 (374)
+++.+..+.|++||++..+.++..+++|...|+.+.|... ...+.+.+.|+++++||.+.++..... .......+.
T Consensus 173 vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~---~vtt~~piw 249 (1081)
T KOG0309|consen 173 VLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKR---TVTTNFPIW 249 (1081)
T ss_pred hhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccce---eccccCcce
Confidence 4555667789999999988999999999999999998542 233578999999999998765422111 111123355
Q ss_pred EEEECCCCC--EEE-EEeCCCeEEE---------EEccC-CeEEEEecccCCceEEEEEeCC--------CC--EEEEEe
Q 017296 303 GTSIRPDSK--IAA-TAGWDRRVRI---------YNYRK-GSALAILKYHHATCNAVSFSSD--------CK--LMASAS 359 (374)
Q Consensus 303 ~~~~sp~~~--~l~-s~~~dg~v~i---------wd~~~-~~~~~~~~~h~~~v~~v~~sp~--------~~--~las~s 359 (374)
.-.|-|-|. ++. .-| +..|.+ |++.+ .+++.++.||...|....|-.. .+ .|+|=|
T Consensus 250 ~~r~~Pfg~g~~~mp~~G-~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWS 328 (1081)
T KOG0309|consen 250 RGRYLPFGEGYCIMPMVG-GNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWS 328 (1081)
T ss_pred eccccccCceeEeccccC-CeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEee
Confidence 555656333 111 111 113333 44433 3578899999988866555432 22 799999
Q ss_pred CCCcEEEecCC
Q 017296 360 EDSTVALWELY 370 (374)
Q Consensus 360 ~D~~v~~W~~~ 370 (374)
.|.++|+|.+.
T Consensus 329 kD~~lrlWpI~ 339 (1081)
T KOG0309|consen 329 KDQTLRLWPID 339 (1081)
T ss_pred cCCceEeeecc
Confidence 99999999875
No 247
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.81 E-value=4e-07 Score=77.39 Aligned_cols=287 Identities=18% Similarity=0.239 Sum_probs=156.7
Q ss_pred CCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccc-----eeeeeeeeece----------eeeEEeccCCccccceeee
Q 017296 17 HRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHR-----TVSSSWVHSAA----------HGIVSVATGPSIGLNKVIS 81 (374)
Q Consensus 17 H~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~-----~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~s 81 (374)
-.+.|+++.|...|.+|++|...|.|.++.-+..+ .+..+++|... ..+..+.+....+.++++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 35778999999999999999999999999854433 12345555433 2355566655445678888
Q ss_pred ccccCeEEEEecCCCCC--CCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCC
Q 017296 82 QGRDGTVKCWDIENGGL--SSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAE 159 (374)
Q Consensus 82 ~~~D~~vrvwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (374)
.+.|++|++|.+....+ ..+..+ ...+|.. .+.+...... ...++ -
T Consensus 105 stNdktiKlWKiyeknlk~va~nnl---s~~~~~~----~~g~~~s~~~--------l~lpr-----------------l 152 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNL---SDSFHSP----MGGPLTSTKE--------LLLPR-----------------L 152 (460)
T ss_pred ecCCceeeeeeeecccchhhhcccc---ccccccc----cCCCcCCHHH--------hhccc-----------------c
Confidence 89999999999975311 000000 0011110 0000000000 00000 0
Q ss_pred CCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEecc
Q 017296 160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIR 239 (374)
Q Consensus 160 ~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~ 239 (374)
...+.++++. ..|++.-. + .+.+-...+..+ . ..+..++|-.|.+|++.
T Consensus 153 s~hd~iiaa~---p~rvyaNa------------------H-----~yhiNSiS~NsD----~-et~lSaDdLrINLWnl~ 201 (460)
T COG5170 153 SEHDEIIAAK---PCRVYANA------------------H-----PYHINSISFNSD----K-ETLLSADDLRINLWNLE 201 (460)
T ss_pred cccceEEEec---cceecccc------------------c-----eeEeeeeeecCc----h-heeeeccceeeeecccc
Confidence 0011111111 11221000 0 000000112111 1 23445567889999987
Q ss_pred CCCCcee--eeecC-----ccCeEEEEEecC-CCceEEEecCCeEEEEEcCCCCCeEEEE-----Eeee--------cCC
Q 017296 240 NPGIPLT--AMKVH-----LEPVLCLSIDES-CNGGISGGADQKIVLYNLDHSTGSCVIK-----KEIN--------LER 298 (374)
Q Consensus 240 ~~~~~~~--~~~~h-----~~~v~~~~~~~~-~~~~~s~s~D~~i~lwd~~~~~~~~~~~-----~~~~--------~~~ 298 (374)
.....+. .++.| +.-|++..|+|. +..+.-.+..|.|++-|++... .|... ..+. .-.
T Consensus 202 i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~a-lcdn~~klfe~~~D~v~~~ff~eiv 280 (460)
T COG5170 202 IIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSA-LCDNSKKLFELTIDGVDVDFFEEIV 280 (460)
T ss_pred ccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhh-hccCchhhhhhccCcccchhHHHHh
Confidence 5543322 23333 245677777764 4455667788999999986321 11100 0000 111
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEEccC-CeEEEEecccCC------------ce---EEEEEeCCCCEEEEEeCCC
Q 017296 299 PGISGTSIRPDSKIAATAGWDRRVRIYNYRK-GSALAILKYHHA------------TC---NAVSFSSDCKLMASASEDS 362 (374)
Q Consensus 299 ~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~h~~------------~v---~~v~~sp~~~~las~s~D~ 362 (374)
..|..+.|+|+|+||++-. --+|+|||++- ..+++++.-|.. .| ..+.||-|.+.+.|||-..
T Consensus 281 sSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~N 359 (460)
T COG5170 281 SSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSN 359 (460)
T ss_pred hhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCccccccccccc
Confidence 3467789999999999765 46999999964 456777755532 22 3367888888999988777
Q ss_pred cEEEec
Q 017296 363 TVALWE 368 (374)
Q Consensus 363 ~v~~W~ 368 (374)
.--++.
T Consensus 360 Nfgiyp 365 (460)
T COG5170 360 NFGIYP 365 (460)
T ss_pred ceeeec
Confidence 666654
No 248
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.81 E-value=2.7e-07 Score=84.43 Aligned_cols=146 Identities=14% Similarity=0.219 Sum_probs=104.2
Q ss_pred EEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEe--eecC----
Q 017296 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKE--INLE---- 297 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~--~~~~---- 297 (374)
++.+.....|.=++|+. +.-+..+......++++.+++....++.|+.||.+.+||.+.......+... ...+
T Consensus 148 ly~~gsg~evYRlNLEq-GrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~ 226 (703)
T KOG2321|consen 148 LYLVGSGSEVYRLNLEQ-GRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGD 226 (703)
T ss_pred EEEeecCcceEEEEccc-cccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCcccc
Confidence 44444455677778875 4446666666789999999887766777888999999998754322222111 1111
Q ss_pred -CCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccC--CceEEEEEeCC--CCEEEEEeCCCcEEEecCCCC
Q 017296 298 -RPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHH--ATCNAVSFSSD--CKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 298 -~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~--~~v~~v~~sp~--~~~las~s~D~~v~~W~~~~~ 372 (374)
...|+++.|+.+|=.|+.|..+|.|.|+|++..+++.. +.|. -+|..++|.+. +..|+|.. -..+|||+-..+
T Consensus 227 ~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~-kdh~~e~pi~~l~~~~~~~q~~v~S~D-k~~~kiWd~~~G 304 (703)
T KOG2321|consen 227 AAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLV-KDHGYELPIKKLDWQDTDQQNKVVSMD-KRILKIWDECTG 304 (703)
T ss_pred ccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceee-cccCCccceeeecccccCCCceEEecc-hHHhhhcccccC
Confidence 13489999999999999999999999999999887754 3354 57888999875 34676653 578899986544
No 249
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.80 E-value=1.6e-06 Score=81.78 Aligned_cols=139 Identities=19% Similarity=0.190 Sum_probs=84.6
Q ss_pred EEEEecCC--cEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEec-CCeEEEEEcCCCCCeEEEEEeeecCCCC
Q 017296 224 VLAGYEDG--SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA-DQKIVLYNLDHSTGSCVIKKEINLERPG 300 (374)
Q Consensus 224 ~~~gs~dg--~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~-D~~i~lwd~~~~~~~~~~~~~~~~~~~~ 300 (374)
+++.+.+| .|.+||+... ....+..+........|++++..++..+. ++...+|.++..++.... +......
T Consensus 263 ~~~~s~~g~~~Iy~~d~~~g--~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~---lt~~g~~ 337 (433)
T PRK04922 263 ALTLSRDGNPEIYVMDLGSR--QLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER---LTFQGNY 337 (433)
T ss_pred EEEEeCCCCceEEEEECCCC--CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE---eecCCCC
Confidence 34455555 5888998753 24445555555567889999988877664 455444443322222211 1112223
Q ss_pred eEEEEECCCCCEEEEEeCCC---eEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCC-C--cEEEecC
Q 017296 301 ISGTSIRPDSKIAATAGWDR---RVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASED-S--TVALWEL 369 (374)
Q Consensus 301 v~~~~~sp~~~~l~s~~~dg---~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D-~--~v~~W~~ 369 (374)
....+|||||++|+..+.++ .|.+||+.+++.. .+. +........|+|||++|+..+.+ + .+.++++
T Consensus 338 ~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~ 410 (433)
T PRK04922 338 NARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVST 410 (433)
T ss_pred ccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 44689999999988665433 6999999877644 343 33344567999999987766543 3 4555554
No 250
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.76 E-value=2e-07 Score=83.68 Aligned_cols=146 Identities=18% Similarity=0.292 Sum_probs=97.6
Q ss_pred EEEEEecCCcEEEEeccCCCCceeee--ec-Ccc---CeEEEEEecCCC-ceEEEecCCeEEEEEcCCCCCeE---EEE-
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAM--KV-HLE---PVLCLSIDESCN-GGISGGADQKIVLYNLDHSTGSC---VIK- 291 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~--~~-h~~---~v~~~~~~~~~~-~~~s~s~D~~i~lwd~~~~~~~~---~~~- 291 (374)
.+++++.|+.++-+|++... +-..+ .. +.. ....++++|... .+++++.|..+++||.+.-.... .+.
T Consensus 247 ~f~S~geD~~v~~~Dlr~~~-pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~ 325 (559)
T KOG1334|consen 247 PFLSCGEDAVVFHIDLRQDV-PAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDK 325 (559)
T ss_pred cccccccccceeeeeeccCC-ccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhh
Confidence 48899999999999998642 22222 22 222 466777787554 67899999999999975321110 000
Q ss_pred ---Eee-ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcc--CC----------eEEE-EecccCC--ceEEEE-EeCC
Q 017296 292 ---KEI-NLERPGISGTSIRPDSKIAATAGWDRRVRIYNYR--KG----------SALA-ILKYHHA--TCNAVS-FSSD 351 (374)
Q Consensus 292 ---~~~-~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~--~~----------~~~~-~~~~h~~--~v~~v~-~sp~ 351 (374)
..+ ....-.|++++|+.++.-+.+.-.|-.|.+|... .| ...+ .+++|.+ .|..+- |-|.
T Consensus 326 f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPr 405 (559)
T KOG1334|consen 326 FCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPR 405 (559)
T ss_pred cCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCc
Confidence 001 1111358999999877777777788899999442 22 1122 3788875 466665 4688
Q ss_pred CCEEEEEeCCCcEEEecC
Q 017296 352 CKLMASASEDSTVALWEL 369 (374)
Q Consensus 352 ~~~las~s~D~~v~~W~~ 369 (374)
.++++|||.=|.|.||+=
T Consensus 406 sEyVvSGSDCGhIFiW~K 423 (559)
T KOG1334|consen 406 SEYVVSGSDCGHIFIWDK 423 (559)
T ss_pred cceEEecCccceEEEEec
Confidence 899999999999999974
No 251
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.71 E-value=1.5e-05 Score=72.24 Aligned_cols=130 Identities=14% Similarity=0.266 Sum_probs=87.7
Q ss_pred CCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEe--cCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEEC
Q 017296 230 DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGG--ADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIR 307 (374)
Q Consensus 230 dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s--~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~s 307 (374)
...+.|++++....++. ..-.++|...++.|....++..+ .+..+.++|++.. ... ......-..+.|+
T Consensus 254 esnLyl~~~~e~~i~V~--~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N---l~~----~~Pe~~rNT~~fs 324 (561)
T COG5354 254 ESNLYLLRITERSIPVE--KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN---LRF----YFPEQKRNTIFFS 324 (561)
T ss_pred cceEEEEeeccccccee--ccccccceeeeecccCCceeEEecccccceeecccccc---eEE----ecCCccccccccc
Confidence 56788998875444432 24578999999988777776554 5778888888642 111 1112223457899
Q ss_pred CCCCEEEEEeCC---CeEEEEEccCCeEE-EEecccCCceEEEEEeCCCCEEEEE------eCCCcEEEecCC
Q 017296 308 PDSKIAATAGWD---RRVRIYNYRKGSAL-AILKYHHATCNAVSFSSDCKLMASA------SEDSTVALWELY 370 (374)
Q Consensus 308 p~~~~l~s~~~d---g~v~iwd~~~~~~~-~~~~~h~~~v~~v~~sp~~~~las~------s~D~~v~~W~~~ 370 (374)
|.+++++.++.| |.|-+||....... ..+.+ ....-+.|+||++++-++ -.|..|+||++.
T Consensus 325 p~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~--~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~ 395 (561)
T COG5354 325 PHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNG--LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY 395 (561)
T ss_pred CcccEEEEecCCccccceEEeccCCceEEEEEeec--CCceEeeccCCceEEEecCCCcccccCcceEEEEec
Confidence 999999998876 57999998643222 23432 223445899999977653 368999999985
No 252
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.66 E-value=5.5e-06 Score=77.88 Aligned_cols=178 Identities=16% Similarity=0.150 Sum_probs=101.3
Q ss_pred CCceEEEcccC--CCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCC--cEEE
Q 017296 160 GPKYMAVAGEQ--LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDG--SILV 235 (374)
Q Consensus 160 ~~~~~~~~~~~--d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg--~i~i 235 (374)
++++++++... ...|.+||+.+++......... ... . ..+.++ +...+++.+.++ .|.+
T Consensus 200 dg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~-----------~~~--~-~~~spD---g~~l~~~~~~~~~~~i~~ 262 (417)
T TIGR02800 200 DGQKLAYVSFESGKPEIYVQDLATGQREKVASFPG-----------MNG--A-PAFSPD---GSKLAVSLSKDGNPDIYV 262 (417)
T ss_pred CCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCC-----------Ccc--c-eEECCC---CCEEEEEECCCCCccEEE
Confidence 33445444332 2579999999875432211100 000 0 123322 332334444444 5888
Q ss_pred EeccCCCCceeeeecCccCeEEEEEecCCCceEEEec-CC--eEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCE
Q 017296 236 WDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA-DQ--KIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKI 312 (374)
Q Consensus 236 wdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~-D~--~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 312 (374)
||+... ....+..+........|++++..++..+. ++ .|.++|++.. ... .+..+........|+|++++
T Consensus 263 ~d~~~~--~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~--~~~---~l~~~~~~~~~~~~spdg~~ 335 (417)
T TIGR02800 263 MDLDGK--QLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGG--EVR---RLTFRGGYNASPSWSPDGDL 335 (417)
T ss_pred EECCCC--CEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCC--CEE---EeecCCCCccCeEECCCCCE
Confidence 888643 23344444444556678888887776554 33 5666666533 211 12222334567899999999
Q ss_pred EEEEeCCC---eEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCc
Q 017296 313 AATAGWDR---RVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDST 363 (374)
Q Consensus 313 l~s~~~dg---~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~ 363 (374)
++.++.++ .|.+||+.++.. ..+..+ .......|+|||+.|+.++.++.
T Consensus 336 i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~-~~~~~p~~spdg~~l~~~~~~~~ 387 (417)
T TIGR02800 336 IAFVHREGGGFNIAVMDLDGGGE-RVLTDT-GLDESPSFAPNGRMILYATTRGG 387 (417)
T ss_pred EEEEEccCCceEEEEEeCCCCCe-EEccCC-CCCCCceECCCCCEEEEEEeCCC
Confidence 98888776 788999877543 333322 23345689999998887766553
No 253
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.64 E-value=1e-05 Score=67.73 Aligned_cols=188 Identities=14% Similarity=0.057 Sum_probs=120.7
Q ss_pred ceEEEcccCCCeEEEEecCCCceeEE-eccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccC
Q 017296 162 KYMAVAGEQLSEVEIWDLNTAERCTR-LHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN 240 (374)
Q Consensus 162 ~~~~~~~~~d~~i~vWd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~ 240 (374)
..++++|+.-+...+|...+.+.... ..+.... ....+-.|. ....+..++.|.+++++++..
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~-----v~~~~r~cd-----------~~~~~~i~sndht~k~~~~~~ 147 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNND-----VTLVKRYCD-----------LKFPLNIASNDHTGKTMVVSG 147 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccc-----hhhhhhhcc-----------cccceeeccCCcceeEEEEec
Confidence 44567777789999999987763222 2111000 000011111 111367789999999999964
Q ss_pred CCCceeeeecCccC--eEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeC
Q 017296 241 PGIPLTAMKVHLEP--VLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGW 318 (374)
Q Consensus 241 ~~~~~~~~~~h~~~--v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~ 318 (374)
... ....|... +..+.+++++..+++-+....|-+|.++..........+ ....+.-.+.+|+.....+|.+..
T Consensus 148 ~s~---~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~-a~t~D~gF~~S~s~~~~~FAv~~Q 223 (344)
T KOG4532|consen 148 DSN---KFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYE-APTSDHGFYNSFSENDLQFAVVFQ 223 (344)
T ss_pred Ccc---cceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEe-cccCCCceeeeeccCcceEEEEec
Confidence 322 22335443 788889998888888899999999999876544332222 222344567889999989999999
Q ss_pred CCeEEEEEccCCe-EE----EEecccCCceEEEEEeCCCC--EEEEEeCCCcEEEecC
Q 017296 319 DRRVRIYNYRKGS-AL----AILKYHHATCNAVSFSSDCK--LMASASEDSTVALWEL 369 (374)
Q Consensus 319 dg~v~iwd~~~~~-~~----~~~~~h~~~v~~v~~sp~~~--~las~s~D~~v~~W~~ 369 (374)
||++.|||++... ++ .+-..|.+++..+.|+|-|. +|+..-.=+.+.+-|+
T Consensus 224 dg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~ 281 (344)
T KOG4532|consen 224 DGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDT 281 (344)
T ss_pred CCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEc
Confidence 9999999997643 22 22345788999999998664 4444333344444443
No 254
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.63 E-value=1.2e-05 Score=75.71 Aligned_cols=132 Identities=17% Similarity=0.109 Sum_probs=86.3
Q ss_pred CcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceE-EEecCC--eEEEEEcCCCCCeEEEEEeeecCCCCeEEEEEC
Q 017296 231 GSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGI-SGGADQ--KIVLYNLDHSTGSCVIKKEINLERPGISGTSIR 307 (374)
Q Consensus 231 g~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~-s~s~D~--~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~s 307 (374)
..|.+||+.... ...+..+...+.+..|+|++..++ +.+.++ .|.+||++..... .+..+........|+
T Consensus 214 ~~i~v~d~~~g~--~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-----~l~~~~~~~~~~~~s 286 (417)
T TIGR02800 214 PEIYVQDLATGQ--REKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-----RLTNGPGIDTEPSWS 286 (417)
T ss_pred cEEEEEECCCCC--EEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-----ECCCCCCCCCCEEEC
Confidence 579999997532 233344555667788999988775 444444 5777887643211 111222223456899
Q ss_pred CCCCEEEEEeC-CC--eEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCC---cEEEecCC
Q 017296 308 PDSKIAATAGW-DR--RVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDS---TVALWELY 370 (374)
Q Consensus 308 p~~~~l~s~~~-dg--~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~---~v~~W~~~ 370 (374)
||++.|+..+. ++ .|.++|+.+++. ..+..+...+...+|+|||++|+.++.++ .|.+|++.
T Consensus 287 ~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~ 354 (417)
T TIGR02800 287 PDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLD 354 (417)
T ss_pred CCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCC
Confidence 99998876554 33 577778776653 34444556677889999999999888776 67777764
No 255
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.63 E-value=6.8e-05 Score=69.50 Aligned_cols=304 Identities=13% Similarity=0.071 Sum_probs=149.9
Q ss_pred CCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCce--ee
Q 017296 29 TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSL--TI 106 (374)
Q Consensus 29 ~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~--~~ 106 (374)
.+..++.++.++.+..+|..+|+.+=............. .++..++.++.|+.+..+|..+|+..-+... ..
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~------v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~ 137 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG------ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEV 137 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE------EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCcee
Confidence 467888888899999999988886533232222111111 1346777888889999999988865311000 00
Q ss_pred eecc-eeeeeeeeeccccccccccCCCCcccccccCc-eeecCCCCCC-----CCCCCCCCCceEEEcccCCCeEEEEec
Q 017296 107 KTNS-YHFCKLSLVKEPYANAKQANEPKDCYEREVGE-TVDTDSLCDS-----KDDVPAEGPKYMAVAGEQLSEVEIWDL 179 (374)
Q Consensus 107 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~d~~i~vWd~ 179 (374)
.... .....+.... ......+.+.+.+. .+........ .......+ . .++.+..++.+..+|+
T Consensus 138 ~~~p~v~~~~v~v~~--------~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~-~-~v~~~~~~g~v~ald~ 207 (377)
T TIGR03300 138 LSPPLVANGLVVVRT--------NDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIAD-G-GVLVGFAGGKLVALDL 207 (377)
T ss_pred ecCCEEECCEEEEEC--------CCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEEC-C-EEEEECCCCEEEEEEc
Confidence 0000 0000000000 00000111111111 0110000000 00000011 1 2445666789999999
Q ss_pred CCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEE
Q 017296 180 NTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLS 259 (374)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~ 259 (374)
++|+.+-...-.......... ........ ... .. ..++.++.+|.+..||+++. ..+-... ........
T Consensus 208 ~tG~~~W~~~~~~~~g~~~~~-~~~~~~~~--p~~---~~--~~vy~~~~~g~l~a~d~~tG-~~~W~~~--~~~~~~p~ 276 (377)
T TIGR03300 208 QTGQPLWEQRVALPKGRTELE-RLVDVDGD--PVV---DG--GQVYAVSYQGRVAALDLRSG-RVLWKRD--ASSYQGPA 276 (377)
T ss_pred cCCCEeeeeccccCCCCCchh-hhhccCCc--cEE---EC--CEEEEEEcCCEEEEEECCCC-cEEEeec--cCCccCce
Confidence 999865433211000000000 00000000 000 01 14777888999999999753 2222111 11111222
Q ss_pred EecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEeccc
Q 017296 260 IDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYH 339 (374)
Q Consensus 260 ~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h 339 (374)
+. +..++.++.||.+..+|.... ....... ........+..+ .+..|+.++.+|.+.++|..+++.+..++.+
T Consensus 277 ~~--~~~vyv~~~~G~l~~~d~~tG--~~~W~~~-~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~ 349 (377)
T TIGR03300 277 VD--DNRLYVTDADGVVVALDRRSG--SELWKND-ELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTD 349 (377)
T ss_pred Ee--CCEEEEECCCCeEEEEECCCC--cEEEccc-cccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcC
Confidence 22 235677888999999998643 3222211 001111111122 3567888999999999999999999888766
Q ss_pred CCceEEEEEeCCCCEEEEEeCCCcEEEe
Q 017296 340 HATCNAVSFSSDCKLMASASEDSTVALW 367 (374)
Q Consensus 340 ~~~v~~v~~sp~~~~las~s~D~~v~~W 367 (374)
...+..-....++ .|..++.||.|..+
T Consensus 350 ~~~~~~sp~~~~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 350 GSGIASPPVVVGD-GLLVQTRDGDLYAF 376 (377)
T ss_pred CCccccCCEEECC-EEEEEeCCceEEEe
Confidence 6444332222344 47778889998765
No 256
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.60 E-value=1.2e-07 Score=81.51 Aligned_cols=88 Identities=18% Similarity=0.369 Sum_probs=68.2
Q ss_pred CCCCCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccce-eeeeeeeeceeeeEEeccCCccccceeeecc
Q 017296 5 PPPPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT-VSSSWVHSAAHGIVSVATGPSIGLNKVISQG 83 (374)
Q Consensus 5 ~~~~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 83 (374)
+....++.++.||.++|++++|.+-..+|+||..|..+.+||+.-.+. ...+++|.. .+..+..-. .-.+++|++
T Consensus 184 ~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~--kV~~l~~~~--~t~~l~S~~ 259 (404)
T KOG1409|consen 184 QNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHND--KVQALSYAQ--HTRQLISCG 259 (404)
T ss_pred ecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchh--hhhhhhhhh--hheeeeecc
Confidence 456689999999999999999999999999999999999999854432 234455543 344333322 236899999
Q ss_pred ccCeEEEEecCCC
Q 017296 84 RDGTVKCWDIENG 96 (374)
Q Consensus 84 ~D~~vrvwd~~~~ 96 (374)
.||.|-+||++..
T Consensus 260 edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 260 EDGGIVVWNMNVK 272 (404)
T ss_pred CCCeEEEEeccce
Confidence 9999999999764
No 257
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.57 E-value=8.4e-08 Score=79.47 Aligned_cols=139 Identities=22% Similarity=0.333 Sum_probs=88.4
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCccCeEEE-----EEecCCCceEEEe-----cCCeEEEEEcCCCCCeEEEEE
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCL-----SIDESCNGGISGG-----ADQKIVLYNLDHSTGSCVIKK 292 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~-----~~~~~~~~~~s~s-----~D~~i~lwd~~~~~~~~~~~~ 292 (374)
.+++++.||.+-+++.++ . ++ ++ |..+...+ ++-..+..+.+++ .-+..+.|+++..+- +..
T Consensus 103 ~V~~~~~dg~~~v~s~~~-~--~~-~~-~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t---~~~ 174 (319)
T KOG4714|consen 103 RVCIGYADGSLAVFSTDK-D--LA-LM-SRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKT---LIP 174 (319)
T ss_pred ceEecCCCceEEEEechH-H--Hh-hh-hhcccccccccccceeecccEEecCCcceEeeccceeeeccccccc---ccc
Confidence 378899999999999864 1 11 11 22222111 1111122222221 133456676653321 111
Q ss_pred eeecCCCCeEEEEECCCCC-EEEEEeCCCeEEEEEccCCe-EEEEecccCCceEEEEEeC-CCCEEEEEeCCCcEEEecC
Q 017296 293 EINLERPGISGTSIRPDSK-IAATAGWDRRVRIYNYRKGS-ALAILKYHHATCNAVSFSS-DCKLMASASEDSTVALWEL 369 (374)
Q Consensus 293 ~~~~~~~~v~~~~~sp~~~-~l~s~~~dg~v~iwd~~~~~-~~~~~~~h~~~v~~v~~sp-~~~~las~s~D~~v~~W~~ 369 (374)
... ....+.+++-+|..+ ++++|+.||.+.+||.+... +...+..|+..++-+-|+| +++.|+++|+||.+--||.
T Consensus 175 ~~~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wda 253 (319)
T KOG4714|consen 175 SKK-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDA 253 (319)
T ss_pred ccc-ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcC
Confidence 111 123488899999654 56789999999999997653 3345789999999999999 5569999999999999987
Q ss_pred C
Q 017296 370 Y 370 (374)
Q Consensus 370 ~ 370 (374)
.
T Consensus 254 s 254 (319)
T KOG4714|consen 254 S 254 (319)
T ss_pred C
Confidence 5
No 258
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.57 E-value=1.9e-07 Score=80.35 Aligned_cols=144 Identities=13% Similarity=0.177 Sum_probs=100.3
Q ss_pred EEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCC-CeEEEEEeeecCCCCeEEE
Q 017296 226 AGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST-GSCVIKKEINLERPGISGT 304 (374)
Q Consensus 226 ~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~-~~~~~~~~~~~~~~~v~~~ 304 (374)
+.+.+..|-+-|+++.. .+.+. ....|.++.|....+.+..|...|.|...|++... |.. .....-.|.+.|+++
T Consensus 229 s~G~sqqv~L~nvetg~--~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~-~~a~rlyh~Ssvtsl 304 (425)
T KOG2695|consen 229 SVGLSQQVLLTNVETGH--QQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNG-WCAQRLYHDSSVTSL 304 (425)
T ss_pred cccccceeEEEEeeccc--ccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCC-cceEEEEcCcchhhh
Confidence 34446677777876532 12222 45678888887777778889999999999997541 110 001112366677777
Q ss_pred EECC-CCCEEEEEeCCCeEEEEEccCCeE---EEEecccCCceEEEE--EeCCCCEEEEEeCCCcEEEecCCCCC
Q 017296 305 SIRP-DSKIAATAGWDRRVRIYNYRKGSA---LAILKYHHATCNAVS--FSSDCKLMASASEDSTVALWELYPPH 373 (374)
Q Consensus 305 ~~sp-~~~~l~s~~~dg~v~iwd~~~~~~---~~~~~~h~~~v~~v~--~sp~~~~las~s~D~~v~~W~~~~~~ 373 (374)
..-. +++++.+.+.+|+|++||++--++ +.++.+|.+.-.-+- ..+....+++++.|...|||.+..+|
T Consensus 305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~gh 379 (425)
T KOG2695|consen 305 QILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGH 379 (425)
T ss_pred hhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCc
Confidence 6544 677788888999999999976665 778889986443333 44666789999999999999998655
No 259
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=0.00011 Score=67.56 Aligned_cols=133 Identities=13% Similarity=0.227 Sum_probs=87.8
Q ss_pred cEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEec---CCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECC
Q 017296 232 SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA---DQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP 308 (374)
Q Consensus 232 ~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~---D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp 308 (374)
.+.||.++....|+..+. -.++|...++.|.+.-++.-+. -.++.+|-++....+..+..++.. ...+.+.|+|
T Consensus 426 n~eIfrireKdIpve~ve-lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsP 502 (698)
T KOG2314|consen 426 NLEIFRIREKDIPVEVVE-LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSP 502 (698)
T ss_pred eEEEEEeeccCCCceeee-cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcC
Confidence 578888887666654432 4678888899998887765433 468889988743333333333322 3477899999
Q ss_pred CCCEEEEEeC---CCeEEEEEccC--CeEEEEecccCCceEEEEEeCCCCEEEEEeC------CCcEEEecC
Q 017296 309 DSKIAATAGW---DRRVRIYNYRK--GSALAILKYHHATCNAVSFSSDCKLMASASE------DSTVALWEL 369 (374)
Q Consensus 309 ~~~~l~s~~~---dg~v~iwd~~~--~~~~~~~~~h~~~v~~v~~sp~~~~las~s~------D~~v~~W~~ 369 (374)
.|++|+.+.. .|.+.++|..- -+.... ..|. .-+.+-|.|.|+|++|+|. |.--+||++
T Consensus 503 kG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~-~eh~-~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tf 572 (698)
T KOG2314|consen 503 KGRFVVVAALVSRRGDLEFYDTDYADLKDTAS-PEHF-AATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTF 572 (698)
T ss_pred CCcEEEEEEecccccceEEEecchhhhhhccC-cccc-ccccceECCCCCEEEEeeehhhhccccceEEEEe
Confidence 9999876654 68899998863 222221 2244 3456899999999999874 444455554
No 260
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.53 E-value=3.6e-05 Score=72.81 Aligned_cols=88 Identities=14% Similarity=0.118 Sum_probs=51.6
Q ss_pred EEEEEecCCCceEEEec-CCeEEE--EEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeC-CCe--EEEEEccC
Q 017296 256 LCLSIDESCNGGISGGA-DQKIVL--YNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGW-DRR--VRIYNYRK 329 (374)
Q Consensus 256 ~~~~~~~~~~~~~s~s~-D~~i~l--wd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~-dg~--v~iwd~~~ 329 (374)
....++|++..++..+. ++...+ +|++.. .... +... .......|+||++.|+-... ++. +.+++. +
T Consensus 353 ~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g--~~~~---lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~ 425 (448)
T PRK04792 353 LGGSITPDGRSMIMVNRTNGKFNIARQDLETG--AMQV---LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-D 425 (448)
T ss_pred cCeeECCCCCEEEEEEecCCceEEEEEECCCC--CeEE---ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-C
Confidence 34678888887766544 444444 555433 2211 1111 11123479999998765444 443 666676 5
Q ss_pred CeEEEEecccCCceEEEEEeC
Q 017296 330 GSALAILKYHHATCNAVSFSS 350 (374)
Q Consensus 330 ~~~~~~~~~h~~~v~~v~~sp 350 (374)
++....+..+.+.+...+|+|
T Consensus 426 G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 426 GRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred CCceEECcCCCCCcCCCccCC
Confidence 666666766666777788887
No 261
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.52 E-value=6.7e-06 Score=69.59 Aligned_cols=127 Identities=16% Similarity=0.193 Sum_probs=90.4
Q ss_pred eEEEEEecCCcEEEEeccCCC-CceeeeecCccCeEEEEEec-CCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCC
Q 017296 222 VNVLAGYEDGSILVWDIRNPG-IPLTAMKVHLEPVLCLSIDE-SCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERP 299 (374)
Q Consensus 222 ~~~~~gs~dg~i~iwdl~~~~-~~~~~~~~h~~~v~~~~~~~-~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~ 299 (374)
..++++-.+|.+.+-+..... ...+..+.|.-+.....|+. +.+.+++||.|+.+..||++-. ..+... ..+.|..
T Consensus 134 ~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p-~~~i~~-n~kvH~~ 211 (339)
T KOG0280|consen 134 TKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIP-KTFIWH-NSKVHTS 211 (339)
T ss_pred ceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCC-cceeee-cceeeec
Confidence 347888888888854433211 23446788999999999953 3346789999999999999832 344433 2345667
Q ss_pred CeEEEEECC-CCCEEEEEeCCCeEEEEEccC-CeEEEEecccCCceEEEEEeCC
Q 017296 300 GISGTSIRP-DSKIAATAGWDRRVRIYNYRK-GSALAILKYHHATCNAVSFSSD 351 (374)
Q Consensus 300 ~v~~~~~sp-~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~h~~~v~~v~~sp~ 351 (374)
+|.++.-+| .+.+|++|+.|-.|++||.+. ++++..-. -.+.|+.+.++|.
T Consensus 212 GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~ 264 (339)
T KOG0280|consen 212 GVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPE 264 (339)
T ss_pred ceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecch
Confidence 899988775 678999999999999999985 45553222 3367888888773
No 262
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.51 E-value=5.4e-05 Score=71.48 Aligned_cols=110 Identities=8% Similarity=0.022 Sum_probs=59.8
Q ss_pred cEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecC-C--eEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECC
Q 017296 232 SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD-Q--KIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP 308 (374)
Q Consensus 232 ~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D-~--~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp 308 (374)
.|.++|+.... ...+...........++|++..++..+.+ + .|.++|++......+ . . ........|+|
T Consensus 312 ~iy~~d~~~g~--~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~l-t-~----~~~~~~p~~sp 383 (430)
T PRK00178 312 QIYKVNVNGGR--AERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRIL-T-D----TSLDESPSVAP 383 (430)
T ss_pred eEEEEECCCCC--EEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEc-c-C----CCCCCCceECC
Confidence 45556664322 22222222223345678888877665543 3 577788765432111 1 1 11122458999
Q ss_pred CCCEEEEEeCC-C--eEEEEEccCCeEEEEecccCCceEEEEEeC
Q 017296 309 DSKIAATAGWD-R--RVRIYNYRKGSALAILKYHHATCNAVSFSS 350 (374)
Q Consensus 309 ~~~~l~s~~~d-g--~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp 350 (374)
||+.++-++.+ + .+.+.+.. ++....+..+.+.+...+|+|
T Consensus 384 dg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 384 NGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred CCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCC
Confidence 99998765543 3 45566663 444445555556677777876
No 263
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.50 E-value=0.00025 Score=65.74 Aligned_cols=179 Identities=15% Similarity=0.123 Sum_probs=98.8
Q ss_pred cccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCcee
Q 017296 167 AGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLT 246 (374)
Q Consensus 167 ~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~ 246 (374)
.+..++.+..||.++++.+-........ ...... ... .. ..+ .++.++.+|.+..+|+++... +-
T Consensus 150 v~~~~g~l~a~d~~tG~~~W~~~~~~~~----~~~~~~--~sp---~~---~~~--~v~~~~~~g~v~ald~~tG~~-~W 214 (377)
T TIGR03300 150 VRTNDGRLTALDAATGERLWTYSRVTPA----LTLRGS--ASP---VI---ADG--GVLVGFAGGKLVALDLQTGQP-LW 214 (377)
T ss_pred EECCCCeEEEEEcCCCceeeEEccCCCc----eeecCC--CCC---EE---ECC--EEEEECCCCEEEEEEccCCCE-ee
Confidence 3455789999999999876554321100 000000 000 00 011 467788889999999875422 21
Q ss_pred eee-----cCcc--C---e-EEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEE
Q 017296 247 AMK-----VHLE--P---V-LCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAAT 315 (374)
Q Consensus 247 ~~~-----~h~~--~---v-~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s 315 (374)
... +... . + ....+. +..++.++.+|.+..+|.+.. ........ ....... ..+..++.
T Consensus 215 ~~~~~~~~g~~~~~~~~~~~~~p~~~--~~~vy~~~~~g~l~a~d~~tG--~~~W~~~~----~~~~~p~--~~~~~vyv 284 (377)
T TIGR03300 215 EQRVALPKGRTELERLVDVDGDPVVD--GGQVYAVSYQGRVAALDLRSG--RVLWKRDA----SSYQGPA--VDDNRLYV 284 (377)
T ss_pred eeccccCCCCCchhhhhccCCccEEE--CCEEEEEEcCCEEEEEECCCC--cEEEeecc----CCccCce--EeCCEEEE
Confidence 110 0000 0 0 011122 235677888999999998643 33322221 1111112 24556777
Q ss_pred EeCCCeEEEEEccCCeEEEEecccCC-ceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 316 AGWDRRVRIYNYRKGSALAILKYHHA-TCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 316 ~~~dg~v~iwd~~~~~~~~~~~~h~~-~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
++.||.+..+|..+++.+.....-.. ...+... .+..|+.++.||.|.+++...+
T Consensus 285 ~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG 340 (377)
T TIGR03300 285 TDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDG 340 (377)
T ss_pred ECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCC
Confidence 88899999999999987765432111 1222222 4568888899999999987654
No 264
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.49 E-value=7.3e-06 Score=69.35 Aligned_cols=146 Identities=14% Similarity=0.086 Sum_probs=98.7
Q ss_pred EEEEEecCCcEEEEeccCCCC--ceeeeecCcc---CeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecC
Q 017296 223 NVLAGYEDGSILVWDIRNPGI--PLTAMKVHLE---PVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLE 297 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~--~~~~~~~h~~---~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~ 297 (374)
.++-+..+|.|.+|....... -+..+..-.- ...++.|++.+..++++-.+|.+..-+... .........+.|
T Consensus 87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~--~~le~vq~wk~H 164 (339)
T KOG0280|consen 87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETE--MVLEKVQTWKVH 164 (339)
T ss_pred eeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecce--eeeeeccccccc
Confidence 356677789999987643211 1111111111 234555667777777777788887443321 111111256677
Q ss_pred CCCeEEEEECC-CCCEEEEEeCCCeEEEEEcc-CCeEEEE-ecccCCceEEEEEeC-CCCEEEEEeCCCcEEEecCC
Q 017296 298 RPGISGTSIRP-DSKIAATAGWDRRVRIYNYR-KGSALAI-LKYHHATCNAVSFSS-DCKLMASASEDSTVALWELY 370 (374)
Q Consensus 298 ~~~v~~~~~sp-~~~~l~s~~~dg~v~iwd~~-~~~~~~~-~~~h~~~v~~v~~sp-~~~~las~s~D~~v~~W~~~ 370 (374)
+..++-+.|+- +..++.+||.|+.+.-||++ .++++.. .+-|...|.++.-+| ++.+||||+-|-+|++||..
T Consensus 165 e~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtR 241 (339)
T KOG0280|consen 165 EFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTR 241 (339)
T ss_pred ceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehh
Confidence 77788888875 45688999999999999998 4566655 567888999998886 56699999999999999874
No 265
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.48 E-value=2.6e-05 Score=67.07 Aligned_cols=294 Identities=14% Similarity=0.137 Sum_probs=157.3
Q ss_pred EEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceee-eccccCeEEEEecCCCCCCCC
Q 017296 23 DVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVI-SQGRDGTVKCWDIENGGLSSN 101 (374)
Q Consensus 23 ~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~~~D~~vrvwd~~~~~~~~~ 101 (374)
-.+|+|+|+++++.+.- .+.|-|.++-+...-+. .-..++=+.+.. +.-+++ ....|+.|.+|++...+
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~---cldki~yieW~a--ds~~ilC~~yk~~~vqvwsl~Qpe---- 82 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFL---CLDKIVYIEWKA--DSCHILCVAYKDPKVQVWSLVQPE---- 82 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHH---HHHHhhheeeec--cceeeeeeeeccceEEEEEeecce----
Confidence 46899999999999864 88889987765322111 111223233433 223344 45678899999997532
Q ss_pred CceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCC
Q 017296 102 PSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNT 181 (374)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~ 181 (374)
..|++.-.. ... . .....++++.++..+.-+-.|.||.+.+
T Consensus 83 ----------w~ckIdeg~--agl--------s-------------------~~~WSPdgrhiL~tseF~lriTVWSL~t 123 (447)
T KOG4497|consen 83 ----------WYCKIDEGQ--AGL--------S-------------------SISWSPDGRHILLTSEFDLRITVWSLNT 123 (447)
T ss_pred ----------eEEEeccCC--Ccc--------e-------------------eeeECCCcceEeeeecceeEEEEEEecc
Confidence 122221100 000 0 0011233445566667788999999988
Q ss_pred CceeEEeccCccCCCCCcCCCCCcceeEE-------------------EeeecCCCCCceEEEEEecCCcEEEEeccCCC
Q 017296 182 AERCTRLHQNSCGGSPNFSSKGRGMCMAV-------------------QAYLPSKSQGFVNVLAGYEDGSILVWDIRNPG 242 (374)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~ 242 (374)
.+...--....+.-...|..+++-+.+.. ..|..+. .+..-+==+=+++.+.+||---
T Consensus 124 ~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT-~DltgieWsPdg~~laVwd~~L-- 200 (447)
T KOG4497|consen 124 QKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDT-IDLTGIEWSPDGNWLAVWDNVL-- 200 (447)
T ss_pred ceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCc-ccccCceECCCCcEEEEecchh--
Confidence 66432221111110011111111111000 0000000 0000000012345577787421
Q ss_pred CceeeeecCc-cCeEEEEEecCCCceEEEecCCeEEEEE-----cC----------CCC--------Ce-------EE--
Q 017296 243 IPLTAMKVHL-EPVLCLSIDESCNGGISGGADQKIVLYN-----LD----------HST--------GS-------CV-- 289 (374)
Q Consensus 243 ~~~~~~~~h~-~~v~~~~~~~~~~~~~s~s~D~~i~lwd-----~~----------~~~--------~~-------~~-- 289 (374)
....+..|. -.+..++++|-++.++.|+.|+.+|+-| .= ..+ .. ++
T Consensus 201 -eykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf 279 (447)
T KOG4497|consen 201 -EYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSF 279 (447)
T ss_pred -hheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhccccccc
Confidence 122233444 4688888999888899999999998843 10 000 00 00
Q ss_pred ----------------------------EEE--eeecCCCCeEEEEECCCCCEEEEEeCC--CeEEEEEccCCeEEEEec
Q 017296 290 ----------------------------IKK--EINLERPGISGTSIRPDSKIAATAGWD--RRVRIYNYRKGSALAILK 337 (374)
Q Consensus 290 ----------------------------~~~--~~~~~~~~v~~~~~sp~~~~l~s~~~d--g~v~iwd~~~~~~~~~~~ 337 (374)
+++ .......++.-++|++|..|+++-... .-+.+||++..+....+.
T Consensus 280 ~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi 359 (447)
T KOG4497|consen 280 TPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI 359 (447)
T ss_pred CCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh
Confidence 000 000112346679999999998876543 468999998766554443
Q ss_pred ccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 338 YHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 338 ~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
....|....|.|....|+-+.....+++|...
T Consensus 360 -Qk~piraf~WdP~~prL~vctg~srLY~W~ps 391 (447)
T KOG4497|consen 360 -QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPS 391 (447)
T ss_pred -hccceeEEEeCCCCceEEEEcCCceEEEEcCC
Confidence 45678889999988877776666778888654
No 266
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.48 E-value=3.9e-05 Score=79.59 Aligned_cols=148 Identities=9% Similarity=0.114 Sum_probs=98.5
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeec---------------CccCeEEEEEecCCCc-eEEEecCCeEEEEEcCCCCC
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKV---------------HLEPVLCLSIDESCNG-GISGGADQKIVLYNLDHSTG 286 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~---------------h~~~v~~~~~~~~~~~-~~s~s~D~~i~lwd~~~~~~ 286 (374)
.+++.+.++.|++||..... ...+.+ .......+++++++.. +++.+.++.|++||++....
T Consensus 697 LyVad~~~~~I~v~d~~~g~--v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~ 774 (1057)
T PLN02919 697 VYIAMAGQHQIWEYNISDGV--TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGS 774 (1057)
T ss_pred EEEEECCCCeEEEEECCCCe--EEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcE
Confidence 45667788999999986432 111111 1123456889988764 45667789999999874321
Q ss_pred eEEEEE---------eee--------cCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEe-------------
Q 017296 287 SCVIKK---------EIN--------LERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAIL------------- 336 (374)
Q Consensus 287 ~~~~~~---------~~~--------~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~------------- 336 (374)
...... ... .....-..++|+|+|.++++-..+++|++||..++......
T Consensus 775 ~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~ 854 (1057)
T PLN02919 775 RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKAL 854 (1057)
T ss_pred EEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCccc
Confidence 111000 000 00012357899999998888889999999999876544221
Q ss_pred cccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 337 KYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 337 ~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
.+.-.....|+++++|+++++-+.+++|++|++...
T Consensus 855 ~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 855 KAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred ccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence 112235778999999999999999999999998643
No 267
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.47 E-value=4.4e-05 Score=71.73 Aligned_cols=136 Identities=15% Similarity=0.139 Sum_probs=80.8
Q ss_pred cEEEEeccCC--CCceeeeecCccCeEEEEEecCCCceEEEe-cCCeEEEEEcCC--CCCeEEEEEeeecCCCCeEEEEE
Q 017296 232 SILVWDIRNP--GIPLTAMKVHLEPVLCLSIDESCNGGISGG-ADQKIVLYNLDH--STGSCVIKKEINLERPGISGTSI 306 (374)
Q Consensus 232 ~i~iwdl~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s-~D~~i~lwd~~~--~~~~~~~~~~~~~~~~~v~~~~~ 306 (374)
.+.+|++... +.+......+........|+|++..++..+ .+|...+|.++. ..+.. ..+......+....|
T Consensus 258 ~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~---~~lt~~~~~~~~p~w 334 (428)
T PRK01029 258 FIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSP---RLLTKKYRNSSCPAW 334 (428)
T ss_pred eEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccce---EEeccCCCCccceeE
Confidence 4555776542 222222222223345678999998777655 467666665432 21111 112222234567899
Q ss_pred CCCCCEEEEEeCC---CeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEe-C--CCcEEEecCCC
Q 017296 307 RPDSKIAATAGWD---RRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASAS-E--DSTVALWELYP 371 (374)
Q Consensus 307 sp~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s-~--D~~v~~W~~~~ 371 (374)
||||+.|+..+.+ ..|.+||+.+++.. .+......+....|+|||+.|+..+ . ...|.+|++..
T Consensus 335 SPDG~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~ 404 (428)
T PRK01029 335 SPDGKKIAFCSVIKGVRQICVYDLATGRDY-QLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLIT 404 (428)
T ss_pred CCCCCEEEEEEcCCCCcEEEEEECCCCCeE-EccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 9999988765543 46899999887654 3433344567789999999776443 2 34577777653
No 268
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.46 E-value=7.2e-06 Score=70.45 Aligned_cols=139 Identities=17% Similarity=0.316 Sum_probs=94.4
Q ss_pred EEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCce-EEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeE
Q 017296 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGG-ISGGADQKIVLYNLDHSTGSCVIKKEINLERPGIS 302 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~ 302 (374)
+-..+.|+.|.+|++..+.- ...++....++..++++|+++.+ .+...|-.|.+|.+....+... ......+.
T Consensus 64 lC~~yk~~~vqvwsl~Qpew-~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-----~~pK~~~k 137 (447)
T KOG4497|consen 64 LCVAYKDPKVQVWSLVQPEW-YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-----PHPKTNVK 137 (447)
T ss_pred eeeeeccceEEEEEeeccee-EEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-----cccccCce
Confidence 44578899999999976542 33455667899999999999665 4566788999999976543322 22334567
Q ss_pred EEEECCCCCEEEEEeCCC---eEEE-----E------Ecc-----------CCeEE---------EEecccC-CceEEEE
Q 017296 303 GTSIRPDSKIAATAGWDR---RVRI-----Y------NYR-----------KGSAL---------AILKYHH-ATCNAVS 347 (374)
Q Consensus 303 ~~~~sp~~~~l~s~~~dg---~v~i-----w------d~~-----------~~~~~---------~~~~~h~-~~v~~v~ 347 (374)
.++|+|||++++..+.-. .+.| | ++. +|.-+ +.+..|. -.+..++
T Consensus 138 g~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~ 217 (447)
T KOG4497|consen 138 GYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVE 217 (447)
T ss_pred eEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEE
Confidence 889999999887665421 1111 1 111 11112 2233344 4688899
Q ss_pred EeCCCCEEEEEeCCCcEEEec
Q 017296 348 FSSDCKLMASASEDSTVALWE 368 (374)
Q Consensus 348 ~sp~~~~las~s~D~~v~~W~ 368 (374)
|+|.+++||.|+.|+.+|+-|
T Consensus 218 wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 218 WSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred eccccceEEeeccchhhhhhc
Confidence 999999999999999998743
No 269
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.45 E-value=1.1e-05 Score=74.34 Aligned_cols=145 Identities=14% Similarity=0.143 Sum_probs=105.8
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeec--C-ccCeEEEEE----ecC----------------CCceEEEecCCeEEEE
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKV--H-LEPVLCLSI----DES----------------CNGGISGGADQKIVLY 279 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~--h-~~~v~~~~~----~~~----------------~~~~~s~s~D~~i~lw 279 (374)
+++....||.+|+||..++. ..+.+.. | .+..++..+ +.. -..++-|-..|.|.++
T Consensus 7 ~~A~~~~~g~l~iw~t~~~~-~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~y 85 (541)
T KOG4547|consen 7 YFALSTGDGRLRIWDTAKNQ-LQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLY 85 (541)
T ss_pred eEeecCCCCeEEEEEccCce-eeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEE
Confidence 57778889999999987632 2222211 1 122222222 111 0123556778899999
Q ss_pred EcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEe
Q 017296 280 NLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASAS 359 (374)
Q Consensus 280 d~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s 359 (374)
++... .......-..|...+.++..+.+-..|.|++.|+.+..|+..+.+.+..++.....+.++..+|||+.|++||
T Consensus 86 s~~~g--~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as 163 (541)
T KOG4547|consen 86 SVAGG--EITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS 163 (541)
T ss_pred EecCC--eEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc
Confidence 88643 3333334456777899999999999999999999999999999998888888889999999999999999998
Q ss_pred CCCcEEEecCCCC
Q 017296 360 EDSTVALWELYPP 372 (374)
Q Consensus 360 ~D~~v~~W~~~~~ 372 (374)
+.|++|++.+.
T Consensus 164 --~~ik~~~~~~k 174 (541)
T KOG4547|consen 164 --RQIKVLDIETK 174 (541)
T ss_pred --ceEEEEEccCc
Confidence 88999998754
No 270
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=2.2e-06 Score=76.43 Aligned_cols=107 Identities=17% Similarity=0.209 Sum_probs=74.3
Q ss_pred EecCCcEEEEeccCCCCc-eeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCC----CCeEE--EE-----Eee
Q 017296 227 GYEDGSILVWDIRNPGIP-LTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS----TGSCV--IK-----KEI 294 (374)
Q Consensus 227 gs~dg~i~iwdl~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~----~~~~~--~~-----~~~ 294 (374)
...+|.|.++|-+...++ ...-+-|..||.++...+.+...++....|.|.-|..+.. ..... +. ...
T Consensus 118 ~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f 197 (558)
T KOG0882|consen 118 LFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGF 197 (558)
T ss_pred cccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcc
Confidence 345677888886543322 3333459999999999998888888888899999998730 00000 00 000
Q ss_pred ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEE
Q 017296 295 NLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSAL 333 (374)
Q Consensus 295 ~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~ 333 (374)
........++.|+|++..++.-+.|.+|++++.++++.+
T Consensus 198 ~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklv 236 (558)
T KOG0882|consen 198 PKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLV 236 (558)
T ss_pred cccccCccceEEccccCcccccCcccEEEEEEeccchhh
Confidence 011123568999999999999999999999999987643
No 271
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.44 E-value=7.4e-05 Score=70.75 Aligned_cols=140 Identities=18% Similarity=0.187 Sum_probs=76.7
Q ss_pred EEEEEecCCc--EEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEec-CCeEEEEEcCCCCCeEEEEEeeecCCC
Q 017296 223 NVLAGYEDGS--ILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA-DQKIVLYNLDHSTGSCVIKKEINLERP 299 (374)
Q Consensus 223 ~~~~gs~dg~--i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~-D~~i~lwd~~~~~~~~~~~~~~~~~~~ 299 (374)
.+++.+.+|. |.++|+... ....+..+........|++++..++..+. ++...+|-++..++.... +.....
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg--~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~---Lt~~g~ 350 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATK--ALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR---LTFEGE 350 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCC--CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE---EecCCC
Confidence 3445566665 666677542 23445445555667788998887765553 444444433322222211 111222
Q ss_pred CeEEEEECCCCCEEEEEeC-CCe--EEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEe-CCCc--EEEecC
Q 017296 300 GISGTSIRPDSKIAATAGW-DRR--VRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASAS-EDST--VALWEL 369 (374)
Q Consensus 300 ~v~~~~~sp~~~~l~s~~~-dg~--v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s-~D~~--v~~W~~ 369 (374)
.....+|+|||++|+..+. ++. |.++|+.+++.. .+.... ......|+|||+.|+..+ .++. +.+++.
T Consensus 351 ~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~~-~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~ 424 (448)
T PRK04792 351 QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTSTR-LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI 424 (448)
T ss_pred CCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCCC-CCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 2345689999999876554 443 455677766542 333221 122347999999877654 3443 444443
No 272
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.43 E-value=1.3e-05 Score=75.52 Aligned_cols=86 Identities=20% Similarity=0.206 Sum_probs=65.4
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeE
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTV 88 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v 88 (374)
..-++|+||.+.|.-+.|+.....|-|+..+|.|.||-+..|.....+.......-+++++|.. +|.++.....||.|
T Consensus 62 smNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~--dG~kIcIvYeDGav 139 (1189)
T KOG2041|consen 62 SMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL--DGTKICIVYEDGAV 139 (1189)
T ss_pred chhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC--CCcEEEEEEccCCE
Confidence 3457899999999999999999999999999999999998887654433333333455666655 67788788888887
Q ss_pred EEEecCCC
Q 017296 89 KCWDIENG 96 (374)
Q Consensus 89 rvwd~~~~ 96 (374)
.+=.++.+
T Consensus 140 IVGsvdGN 147 (1189)
T KOG2041|consen 140 IVGSVDGN 147 (1189)
T ss_pred EEEeeccc
Confidence 77666544
No 273
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.41 E-value=0.00048 Score=62.16 Aligned_cols=109 Identities=15% Similarity=0.182 Sum_probs=67.4
Q ss_pred EEEEEecCCcEEEEeccCCC----Cceeeeec-------CccCeEEEEEecCCCceEEEe----------cCCeEEEEEc
Q 017296 223 NVLAGYEDGSILVWDIRNPG----IPLTAMKV-------HLEPVLCLSIDESCNGGISGG----------ADQKIVLYNL 281 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~----~~~~~~~~-------h~~~v~~~~~~~~~~~~~s~s----------~D~~i~lwd~ 281 (374)
.+...++ |+|.+-|+.... .+...+.. ......-+++++++..++... ..+.|.++|.
T Consensus 208 ~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~ 286 (352)
T TIGR02658 208 LVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA 286 (352)
T ss_pred EEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEEC
Confidence 3444444 999999964321 11111111 122333488888777665532 1246888877
Q ss_pred CCCCCeEEEEEeeecCCCCeEEEEECCCCC-EEEEEe-CCCeEEEEEccCCeEEEEec
Q 017296 282 DHSTGSCVIKKEINLERPGISGTSIRPDSK-IAATAG-WDRRVRIYNYRKGSALAILK 337 (374)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~~-~dg~v~iwd~~~~~~~~~~~ 337 (374)
... +... .+.. ...+..++|+||++ +|+... .++.|.+.|..+++.++.+.
T Consensus 287 ~t~--kvi~--~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 287 KTG--KRLR--KIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred CCC--eEEE--EEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 543 3222 2221 23688999999999 777666 57899999999999888873
No 274
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.40 E-value=0.00056 Score=71.27 Aligned_cols=109 Identities=17% Similarity=0.185 Sum_probs=72.0
Q ss_pred EEEEEecCCcEEEEeccCCCCceee------------ee--------cCccCeEEEEEecCCCceEEEecCCeEEEEEcC
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTA------------MK--------VHLEPVLCLSIDESCNGGISGGADQKIVLYNLD 282 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~------------~~--------~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~ 282 (374)
.+++-+.++.|++||+......... +. ........+++++++..+++.+.+++|++||.+
T Consensus 754 LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~ 833 (1057)
T PLN02919 754 LYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPA 833 (1057)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECC
Confidence 4566778899999998753311100 00 001123578889888878888899999999986
Q ss_pred CCCCeEEEEEe----------eecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeE
Q 017296 283 HSTGSCVIKKE----------INLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSA 332 (374)
Q Consensus 283 ~~~~~~~~~~~----------~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~ 332 (374)
....... ... ....-.....++++|+|+++++-+.+++|++||+.+++.
T Consensus 834 tg~v~ti-aG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 834 TKRVTTL-AGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCeEEEE-eccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 4321111 100 011112456899999999989888999999999988754
No 275
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.38 E-value=1.5e-05 Score=66.63 Aligned_cols=142 Identities=13% Similarity=0.047 Sum_probs=97.7
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCccCeEEE---EEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCC
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCL---SIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERP 299 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~---~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~ 299 (374)
.++.|+..|...+|.+.+...-++....|...|.-+ +... --+..++.|.++++.+++....+... ....-
T Consensus 86 ~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~--~~~~i~sndht~k~~~~~~~s~~~~~----h~~~~ 159 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLK--FPLNIASNDHTGKTMVVSGDSNKFAV----HNQNL 159 (344)
T ss_pred EEEeccccceeeeecccCcccceeeecccccchhhhhhhcccc--cceeeccCCcceeEEEEecCccccee----ecccc
Confidence 477888999999999875444444455555433322 1111 12467889999999999765432221 11112
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEEccCC-eEE-E-EecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 300 GISGTSIRPDSKIAATAGWDRRVRIYNYRKG-SAL-A-ILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 300 ~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~-~~~-~-~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
...+++++||++++++-+.-..|.+|.+... +-+ . ....-+..-.+..|+.+...+|.+++||++.|||+.
T Consensus 160 ~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR 233 (344)
T KOG4532|consen 160 TQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVR 233 (344)
T ss_pred ceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEec
Confidence 3678999999999999999999999988543 222 2 122223445677899999999999999999999984
No 276
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.33 E-value=0.0002 Score=67.63 Aligned_cols=135 Identities=15% Similarity=0.103 Sum_probs=77.9
Q ss_pred EEEEecCC--cEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEec-CC--eEEEEEcCCCCCeEEEEEeeecCC
Q 017296 224 VLAGYEDG--SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA-DQ--KIVLYNLDHSTGSCVIKKEINLER 298 (374)
Q Consensus 224 ~~~gs~dg--~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~-D~--~i~lwd~~~~~~~~~~~~~~~~~~ 298 (374)
+++.+.+| .|.+||+... ....+..+........|++++..++..+. ++ .|.++|++....... ....
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~--~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l-----t~~~ 330 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASR--QLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV-----TFVG 330 (430)
T ss_pred EEEEccCCCceEEEEECCCC--CeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe-----ecCC
Confidence 33444454 5777888653 23445445545566788888887765553 33 466666654321111 1111
Q ss_pred CCeEEEEECCCCCEEEEEeCC-C--eEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCC-CcEEEe
Q 017296 299 PGISGTSIRPDSKIAATAGWD-R--RVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASED-STVALW 367 (374)
Q Consensus 299 ~~v~~~~~sp~~~~l~s~~~d-g--~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D-~~v~~W 367 (374)
.......|+||+++|+....+ + .|.+||+.+++.. .+. +........|+|||+.|+.++.+ +.-+||
T Consensus 331 ~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~ 401 (430)
T PRK00178 331 NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILT-DTSLDESPSVAPNGTMLIYATRQQGRGVLM 401 (430)
T ss_pred CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-Ecc-CCCCCCCceECCCCCEEEEEEecCCceEEE
Confidence 223456899999998866543 3 4788898877542 332 22222345899999988766543 333333
No 277
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.33 E-value=0.00016 Score=66.56 Aligned_cols=114 Identities=16% Similarity=0.244 Sum_probs=79.3
Q ss_pred EEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEec---CCeEEEEEcCCCCCeEEEEEeeecCCCC
Q 017296 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA---DQKIVLYNLDHSTGSCVIKKEINLERPG 300 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~---D~~i~lwd~~~~~~~~~~~~~~~~~~~~ 300 (374)
++-|..--.+.|||++. .++.. .-..+=+++-|+|.++.++.+|- .|.|.+||+... +++. . .....
T Consensus 287 VvyGfMPAkvtifnlr~--~~v~d--f~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~--K~i~--~--~~a~~ 356 (566)
T KOG2315|consen 287 VVYGFMPAKVTIFNLRG--KPVFD--FPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR--KLIA--K--FKAAN 356 (566)
T ss_pred EEEecccceEEEEcCCC--CEeEe--CCCCCccceEECCCCCEEEEeecCCCCCceEEEeccch--hhcc--c--cccCC
Confidence 44577788899999973 34433 35678888999999998887775 479999998642 2221 1 12234
Q ss_pred eEEEEECCCCCEEEEEeC------CCeEEEEEccCCeEEEEecccCC-ceEEEEEeC
Q 017296 301 ISGTSIRPDSKIAATAGW------DRRVRIYNYRKGSALAILKYHHA-TCNAVSFSS 350 (374)
Q Consensus 301 v~~~~~sp~~~~l~s~~~------dg~v~iwd~~~~~~~~~~~~h~~-~v~~v~~sp 350 (374)
.+-..|+|||++++++.. |+.++||+. +|+.+.. .+.. ..+.+.|-|
T Consensus 357 tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~~--~~f~sEL~qv~W~P 410 (566)
T KOG2315|consen 357 TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLHE--KMFKSELLQVEWRP 410 (566)
T ss_pred ceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCceeeh--hhhhHhHhheeeee
Confidence 566789999999987775 789999998 5766642 2333 366667765
No 278
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.30 E-value=4.8e-06 Score=71.88 Aligned_cols=143 Identities=24% Similarity=0.359 Sum_probs=93.3
Q ss_pred EEEEEecCCcEEEEeccCCCCce--------------ee---------------------eecCccCeEEEEEecCCCce
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPL--------------TA---------------------MKVHLEPVLCLSIDESCNGG 267 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~--------------~~---------------------~~~h~~~v~~~~~~~~~~~~ 267 (374)
.++...+|.+|++|-+...+... +. -..|+--|++++++.+...+
T Consensus 100 ~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~ 179 (433)
T KOG1354|consen 100 EFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETF 179 (433)
T ss_pred EEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceE
Confidence 46677889999999885421100 00 02466678888888777665
Q ss_pred EEEecCCeEEEEEcCCCCCeEEEEEeeecC-----CCCeEEEEECCC-CCEEEEEeCCCeEEEEEccCCeE------EEE
Q 017296 268 ISGGADQKIVLYNLDHSTGSCVIKKEINLE-----RPGISGTSIRPD-SKIAATAGWDRRVRIYNYRKGSA------LAI 335 (374)
Q Consensus 268 ~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~-----~~~v~~~~~sp~-~~~l~s~~~dg~v~iwd~~~~~~------~~~ 335 (374)
+++ .|=.|.||+++-..+..-.. .++-+ ..-|++..|||. ..+++=.+..|+|++-|++.... +..
T Consensus 180 lSA-DdLRINLWnlei~d~sFnIV-DIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfE 257 (433)
T KOG1354|consen 180 LSA-DDLRINLWNLEIIDQSFNIV-DIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFE 257 (433)
T ss_pred eec-cceeeeeccccccCCceeEE-EccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhc
Confidence 554 67899999997654433322 11111 123778899995 44555566789999999974211 100
Q ss_pred ----------ecccCCceEEEEEeCCCCEEEEEeCC-CcEEEecC
Q 017296 336 ----------LKYHHATCNAVSFSSDCKLMASASED-STVALWEL 369 (374)
Q Consensus 336 ----------~~~h~~~v~~v~~sp~~~~las~s~D-~~v~~W~~ 369 (374)
+..--..|+.+.|+.+|++++| .| .+|++||+
T Consensus 258 epedp~~rsffseiIsSISDvKFs~sGryils--RDyltvk~wD~ 300 (433)
T KOG1354|consen 258 EPEDPSSRSFFSEIISSISDVKFSHSGRYILS--RDYLTVKLWDL 300 (433)
T ss_pred cccCCcchhhHHHHhhhhhceEEccCCcEEEE--eccceeEEEec
Confidence 0111246888999999999986 45 89999998
No 279
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.28 E-value=0.00019 Score=67.50 Aligned_cols=137 Identities=18% Similarity=0.152 Sum_probs=79.0
Q ss_pred CcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEec-----CCeEEEEEcCCCC-CeEEEEEeeecCCCCeEEE
Q 017296 231 GSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA-----DQKIVLYNLDHST-GSCVIKKEINLERPGISGT 304 (374)
Q Consensus 231 g~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~-----D~~i~lwd~~~~~-~~~~~~~~~~~~~~~v~~~ 304 (374)
..|.+.++.... ...+...........|+|++..++..+. |-.+.+|+++... +... .............
T Consensus 211 ~~I~~~~l~~g~--~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~--~lt~~~~~~~~~p 286 (428)
T PRK01029 211 PKIFLGSLENPA--GKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPR--RLLNEAFGTQGNP 286 (428)
T ss_pred ceEEEEECCCCC--ceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcce--EeecCCCCCcCCe
Confidence 457777776432 2223223344456788999988775542 3344556765321 1111 1111111223567
Q ss_pred EECCCCCEEEEEe-CCCeEEEEEc--cC-CeEEEEecccCCceEEEEEeCCCCEEEEEeCC---CcEEEecCCC
Q 017296 305 SIRPDSKIAATAG-WDRRVRIYNY--RK-GSALAILKYHHATCNAVSFSSDCKLMASASED---STVALWELYP 371 (374)
Q Consensus 305 ~~sp~~~~l~s~~-~dg~v~iwd~--~~-~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D---~~v~~W~~~~ 371 (374)
+|+|||+.|+..+ .+|...+|.+ .. +.....+..+...+....|||||++|+..+.+ ..|.+|++..
T Consensus 287 ~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~ 360 (428)
T PRK01029 287 SFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT 360 (428)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence 9999999877555 4676666654 21 23334454455567788999999988876543 3578888754
No 280
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.25 E-value=8.9e-06 Score=70.35 Aligned_cols=127 Identities=23% Similarity=0.296 Sum_probs=88.0
Q ss_pred EEEEEecCCcEEEEeccCC----CCceeeeecCccCeEEEEEec-CCCceEEEecCCeEEEEEcCCCCC-eEEEEEeeec
Q 017296 223 NVLAGYEDGSILVWDIRNP----GIPLTAMKVHLEPVLCLSIDE-SCNGGISGGADQKIVLYNLDHSTG-SCVIKKEINL 296 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~----~~~~~~~~~h~~~v~~~~~~~-~~~~~~s~s~D~~i~lwd~~~~~~-~~~~~~~~~~ 296 (374)
.+..|..+|.|...|+|.. +.+.+ .-.|...|+++.+-. +.+.+++.+-+|.|+|||++.-.. +-+...+-..
T Consensus 266 Lv~~GcRngeI~~iDLR~rnqG~~~~a~-rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHv 344 (425)
T KOG2695|consen 266 LVFNGCRNGEIFVIDLRCRNQGNGWCAQ-RLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHV 344 (425)
T ss_pred eeEecccCCcEEEEEeeecccCCCcceE-EEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccc
Confidence 5778999999999999864 22222 346899999998844 667788888999999999974322 1122222111
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEeccc----CCceEEEEEeC
Q 017296 297 ERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYH----HATCNAVSFSS 350 (374)
Q Consensus 297 ~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h----~~~v~~v~~sp 350 (374)
....-.-+.+.|....|+++|.|-.-|||.++++..+.+++.. +..+++++|..
T Consensus 345 N~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 345 NLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred ccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehhc
Confidence 1111223445677888999999999999999999988877633 23566677653
No 281
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.21 E-value=2.8e-05 Score=68.58 Aligned_cols=103 Identities=15% Similarity=0.108 Sum_probs=75.0
Q ss_pred ecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEEC
Q 017296 228 YEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIR 307 (374)
Q Consensus 228 s~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~s 307 (374)
.+...+.+|...+ .+...+-||...++.+++.++...++++..|..||+=.... ......-.-+|...|..+++-
T Consensus 129 gD~~~~di~s~~~--~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa---~f~IesfclGH~eFVS~isl~ 203 (390)
T KOG3914|consen 129 GDVYSFDILSADS--GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPA---TFVIESFCLGHKEFVSTISLT 203 (390)
T ss_pred CCceeeeeecccc--cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCc---ccchhhhccccHhheeeeeec
Confidence 3445556665543 23445669999999999999999999999999999965431 111111122466788999988
Q ss_pred CCCCEEEEEeCCCeEEEEEccCCeEEEEe
Q 017296 308 PDSKIAATAGWDRRVRIYNYRKGSALAIL 336 (374)
Q Consensus 308 p~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 336 (374)
++. .|+|||.|+++++||+.+|+.+.++
T Consensus 204 ~~~-~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 204 DNY-LLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred cCc-eeeecCCCCcEEEEecccCCccccc
Confidence 764 5899999999999999999876544
No 282
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.18 E-value=2.2e-05 Score=74.32 Aligned_cols=221 Identities=19% Similarity=0.248 Sum_probs=119.4
Q ss_pred CCeEEeecCCCceeEEEEeCCC-CEEEEecCCCcEEEEeCcccce-eeeeeeeeceeeeEEeccCCccccceeeeccccC
Q 017296 9 DPVAVLRGHRASVTDVCFHQTK-PILFAGTTGGELRIWDTVQHRT-VSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDG 86 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~-~~l~s~s~D~~v~vWd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ 86 (374)
+--.++.||..+|+.+-|+++. ..|++.+.|..|-.||+.+... +.....-. .+...+.+.. .+.+.+++ +-..
T Consensus 105 aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~--s~asqVkwny-k~p~vlas-shg~ 180 (1081)
T KOG0309|consen 105 AIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWR--SAASQVKWNY-KDPNVLAS-SHGN 180 (1081)
T ss_pred ceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeeccc--ccCceeeecc-cCcchhhh-ccCC
Confidence 4457899999999999999865 5799999999999999877553 33222111 1223344443 23455543 3345
Q ss_pred eEEEEecCCCCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEE
Q 017296 87 TVKCWDIENGGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAV 166 (374)
Q Consensus 87 ~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (374)
-|++||.+.|.. |...++. |...+ +...+.. ++ .-.+.
T Consensus 181 ~i~vwd~r~gs~---pl~s~K~---~vs~v--------n~~~fnr-----------------~~-----------~s~~~ 218 (1081)
T KOG0309|consen 181 DIFVWDLRKGST---PLCSLKG---HVSSV--------NSIDFNR-----------------FK-----------YSEIM 218 (1081)
T ss_pred ceEEEeccCCCc---ceEEecc---cceee--------ehHHHhh-----------------hh-----------hhhhc
Confidence 699999988742 2222222 11000 0000000 00 01234
Q ss_pred cccCCCeEEEEecCCCc--eeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCc
Q 017296 167 AGEQLSEVEIWDLNTAE--RCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 244 (374)
Q Consensus 167 ~~~~d~~i~vWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~ 244 (374)
+.+.|++|+.||-.... ...+...+.......+.+-+.++|+-.+ .|...+..---++....|+......+
T Consensus 219 s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~-------~G~n~v~~~~c~n~d~e~n~~~~~~p 291 (1081)
T KOG0309|consen 219 SSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPM-------VGGNMVPQLRCENSDLEWNVFDLNTP 291 (1081)
T ss_pred ccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccc-------cCCeeeeeccccchhhhhccccCCcc
Confidence 56678999999865432 1111111111111122222333332110 11111111122344455665555668
Q ss_pred eeeeecCccCeEEEEE--------e--cCCCceEEEecCCeEEEEEcC
Q 017296 245 LTAMKVHLEPVLCLSI--------D--ESCNGGISGGADQKIVLYNLD 282 (374)
Q Consensus 245 ~~~~~~h~~~v~~~~~--------~--~~~~~~~s~s~D~~i~lwd~~ 282 (374)
+.++.||.+.|...-+ | -..-+|+|=|.|.++|+|-++
T Consensus 292 Vh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 292 VHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred eeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence 8999999988766544 1 112257999999999999875
No 283
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.16 E-value=0.00015 Score=67.57 Aligned_cols=69 Identities=13% Similarity=0.233 Sum_probs=59.2
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 299 PGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 299 ~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
..+.+.+++|+...++.|+.||.|.+||...+-.. +..+.-.+..++|+|+|..++.|+.-|.+.+||+
T Consensus 260 s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 260 SQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDM 328 (545)
T ss_pred CcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEe
Confidence 46889999999999999999999999998765322 3334556788999999999999999999999997
No 284
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.15 E-value=0.0013 Score=59.74 Aligned_cols=133 Identities=17% Similarity=0.187 Sum_probs=96.9
Q ss_pred CCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCC-eEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECC
Q 017296 230 DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQ-KIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP 308 (374)
Q Consensus 230 dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~-~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp 308 (374)
-|...+++... ..... -+|...|....+..+...++.|..|| .+-++|.++.. .+.+...-..|.++..+|
T Consensus 340 RGkaFi~~~~~--~~~iq-v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-----~kr~e~~lg~I~av~vs~ 411 (668)
T COG4946 340 RGKAFIMRPWD--GYSIQ-VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-----VKRIEKDLGNIEAVKVSP 411 (668)
T ss_pred cCcEEEECCCC--CeeEE-cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-----EEEeeCCccceEEEEEcC
Confidence 56677766532 12222 25677788888866656788999999 99999987542 122233345689999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCc----EEEecCC
Q 017296 309 DSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDST----VALWELY 370 (374)
Q Consensus 309 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~----v~~W~~~ 370 (374)
+|++++.+.....+.+.|+.+++..-.-+.-.+-|...+|||+++++|-+=.+|. |+++++.
T Consensus 412 dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~ 477 (668)
T COG4946 412 DGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMD 477 (668)
T ss_pred CCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecC
Confidence 9999999988889999999998865444455678999999999999998766654 5566553
No 285
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.10 E-value=4.3e-06 Score=76.50 Aligned_cols=125 Identities=18% Similarity=0.253 Sum_probs=87.0
Q ss_pred ceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCC---CeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCC
Q 017296 244 PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHST---GSCVIKKEINLERPGISGTSIRPDSKIAATAGWDR 320 (374)
Q Consensus 244 ~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~---~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg 320 (374)
.+..+.||++.|+.+.--.+.+.++++|.|.++++|.++... +.-..+.....|...|.++.|-.+-+++++. ||
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 355678999999988765556789999999999999996421 1111233456677789999999998888864 99
Q ss_pred eEEEEEccCCeEEEEecc-c-CCceEEEEEeCC--CCE-EEEEeCCCcEEEecCC
Q 017296 321 RVRIYNYRKGSALAILKY-H-HATCNAVSFSSD--CKL-MASASEDSTVALWELY 370 (374)
Q Consensus 321 ~v~iwd~~~~~~~~~~~~-h-~~~v~~v~~sp~--~~~-las~s~D~~v~~W~~~ 370 (374)
-|.+||.--++.+..+.. . ++.+.-+..-|+ ... +|-++...+||++|..
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaR 859 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDAR 859 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecc
Confidence 999999987877654321 1 123333444443 333 3445899999998753
No 286
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.10 E-value=0.0016 Score=59.50 Aligned_cols=122 Identities=14% Similarity=0.195 Sum_probs=78.4
Q ss_pred EEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecC---CeEEEEEcCCCCCeEEEEEeeecCCCC
Q 017296 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGAD---QKIVLYNLDHSTGSCVIKKEINLERPG 300 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D---~~i~lwd~~~~~~~~~~~~~~~~~~~~ 300 (374)
+++|..+-.+-++|++.. .. +.....+=+.+.|+|..++.+.++-| |.|.+||... +........ ...
T Consensus 291 vi~g~~pa~~s~~~lr~N--l~--~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~---rf~~~~~~~--~~n 361 (561)
T COG5354 291 VISGYMPASVSVFDLRGN--LR--FYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAG---RFKVAGAFN--GLN 361 (561)
T ss_pred EEecccccceeecccccc--eE--EecCCcccccccccCcccEEEEecCCccccceEEeccCC---ceEEEEEee--cCC
Confidence 667889999999999742 12 23345566778888888888887765 6899998642 233222222 233
Q ss_pred eEEEEECCCCCEEEEEe------CCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCC
Q 017296 301 ISGTSIRPDSKIAATAG------WDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDS 362 (374)
Q Consensus 301 v~~~~~sp~~~~l~s~~------~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~ 362 (374)
.+-+.|+||++++.++. .|..|+|||+...+ +. ...-+.|-|.|++.-+.|.+.
T Consensus 362 ~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~-~f-------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 362 TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK-VF-------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred ceEeeccCCceEEEecCCCcccccCcceEEEEecCch-hh-------hhhhccccCCcccceeeccCC
Confidence 45567999999876554 27789999985322 21 233456666666655555443
No 287
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.06 E-value=0.00049 Score=57.65 Aligned_cols=60 Identities=20% Similarity=0.377 Sum_probs=52.6
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCC-CceEEEecCCeEEEEEcC
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESC-NGGISGGADQKIVLYNLD 282 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~s~s~D~~i~lwd~~ 282 (374)
.++.|++||.+-+||+|+...+...++.|..++..+-|+|+. ..|.+++.||.+--||..
T Consensus 194 ~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 194 LVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred EEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence 467799999999999998777888899999999999998753 468999999999999874
No 288
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.02 E-value=0.0083 Score=52.82 Aligned_cols=284 Identities=12% Similarity=0.137 Sum_probs=149.3
Q ss_pred cCCCceeEEEEeCCCCEEEEecCC---CcEEEEeCc--ccceee--e--eeeeeceeeeEEeccCCccccceeeecc-cc
Q 017296 16 GHRASVTDVCFHQTKPILFAGTTG---GELRIWDTV--QHRTVS--S--SWVHSAAHGIVSVATGPSIGLNKVISQG-RD 85 (374)
Q Consensus 16 gH~~~V~~l~~~~~~~~l~s~s~D---~~v~vWd~~--~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~D 85 (374)
.+.+..+-|+|+++.+.|.++-.+ +.|-.+... +|+... . +.++.. .-++.+ .+++.++++. .-
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p----~yvsvd--~~g~~vf~AnY~~ 110 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPP----CYVSVD--EDGRFVFVANYHS 110 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCC----eEEEEC--CCCCEEEEEEccC
Confidence 467788899999999999988554 666665543 354211 1 111111 112333 3566777665 45
Q ss_pred CeEEEEecCC-CCCCCCCceeeeecceeeeeeeeeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceE
Q 017296 86 GTVKCWDIEN-GGLSSNPSLTIKTNSYHFCKLSLVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYM 164 (374)
Q Consensus 86 ~~vrvwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (374)
+.|.+.-++. |.+.. +...+ .+. ...+. ..+.... ++. ..+ .+.++++
T Consensus 111 g~v~v~p~~~dG~l~~-~v~~~-~h~--------g~~p~--~rQ~~~h-----------------~H~-a~~-tP~~~~l 159 (346)
T COG2706 111 GSVSVYPLQADGSLQP-VVQVV-KHT--------GSGPH--ERQESPH-----------------VHS-ANF-TPDGRYL 159 (346)
T ss_pred ceEEEEEcccCCcccc-ceeee-ecC--------CCCCC--ccccCCc-----------------cce-eee-CCCCCEE
Confidence 8999999866 43211 10000 000 00000 0000000 000 012 2334566
Q ss_pred EEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCc
Q 017296 165 AVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIP 244 (374)
Q Consensus 165 ~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~ 244 (374)
++..-.-..|.++++..++....-. ... .++. ..+.+ .|.|+ ++...++.--+++|.+|........
T Consensus 160 ~v~DLG~Dri~~y~~~dg~L~~~~~-~~v--~~G~--GPRHi-----~FHpn---~k~aY~v~EL~stV~v~~y~~~~g~ 226 (346)
T COG2706 160 VVPDLGTDRIFLYDLDDGKLTPADP-AEV--KPGA--GPRHI-----VFHPN---GKYAYLVNELNSTVDVLEYNPAVGK 226 (346)
T ss_pred EEeecCCceEEEEEcccCccccccc-ccc--CCCC--CcceE-----EEcCC---CcEEEEEeccCCEEEEEEEcCCCce
Confidence 6554444579999999765422211 110 0011 11111 24443 2223445666889999998754333
Q ss_pred eeeeecC---------ccCeEEEEEecCCCceEEEe-cCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEE
Q 017296 245 LTAMKVH---------LEPVLCLSIDESCNGGISGG-ADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAA 314 (374)
Q Consensus 245 ~~~~~~h---------~~~v~~~~~~~~~~~~~s~s-~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 314 (374)
+..++.+ ......+.++++++.|+.+- ....|.++.++..+++..+......+...-+...|+|.+++|+
T Consensus 227 ~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Li 306 (346)
T COG2706 227 FEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLI 306 (346)
T ss_pred EEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEE
Confidence 3333321 23566777889998765443 3458999998877666554443333444457889999999988
Q ss_pred EEeCC-CeEEEEEcc--CCeEEEEec-ccCCceEEEEEe
Q 017296 315 TAGWD-RRVRIYNYR--KGSALAILK-YHHATCNAVSFS 349 (374)
Q Consensus 315 s~~~d-g~v~iwd~~--~~~~~~~~~-~h~~~v~~v~~s 349 (374)
+++.| ..|.+|.+. +|+.-.... .......||.|.
T Consensus 307 aa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 307 AANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred EEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 77765 568888663 454332222 223344566663
No 289
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.01 E-value=0.0011 Score=63.64 Aligned_cols=124 Identities=15% Similarity=0.197 Sum_probs=83.3
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceE----------EEecCCeEEEEEcCCCCCeEEEEE
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGI----------SGGADQKIVLYNLDHSTGSCVIKK 292 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~----------s~s~D~~i~lwd~~~~~~~~~~~~ 292 (374)
.++.|.+.|+|.++|+.+ +.....+..|+..|.++.+-+.. .++ +++.-+.+.+=|++++-.+ .++.
T Consensus 439 LvAvGT~sGTV~vvdvst-~~v~~~fsvht~~VkgleW~g~s-slvSfsys~~n~~sg~vrN~l~vtdLrtGlsk-~fR~ 515 (1062)
T KOG1912|consen 439 LVAVGTNSGTVDVVDVST-NAVAASFSVHTSLVKGLEWLGNS-SLVSFSYSHVNSASGGVRNDLVVTDLRTGLSK-RFRG 515 (1062)
T ss_pred eEEeecCCceEEEEEecc-hhhhhhhcccccceeeeeeccce-eEEEeeeccccccccceeeeEEEEEccccccc-cccc
Confidence 467799999999999975 44456677899999999885432 233 3444566777777643221 1222
Q ss_pred eeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEe
Q 017296 293 EINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFS 349 (374)
Q Consensus 293 ~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s 349 (374)
..+..+..|+.+..|.-++|++..-.|..+.+||+++...+....-..-.+..+.|+
T Consensus 516 l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWs 572 (1062)
T KOG1912|consen 516 LQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWS 572 (1062)
T ss_pred CCCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeec
Confidence 233455679999999999999999999999999997755432221111125555665
No 290
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=98.01 E-value=1.2e-05 Score=65.87 Aligned_cols=142 Identities=15% Similarity=0.164 Sum_probs=91.2
Q ss_pred EEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEE
Q 017296 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISG 303 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~ 303 (374)
+..-+.||+|+-++++......+....|... ..+-.....++.|+.||.|.+|+.+... .+.-+... ........
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g-~~~d~~~s-~~e~i~~~ 107 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEG-AHSDRVCS-GEESIDLG 107 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccc-hHHHhhhc-ccccceec
Confidence 4556889999999987543222222223222 1112223446889999999999876221 11100000 01111222
Q ss_pred EEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccC-CceEEEEEeCCCCEEEEE--eCCCcEEEecCC
Q 017296 304 TSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHH-ATCNAVSFSSDCKLMASA--SEDSTVALWELY 370 (374)
Q Consensus 304 ~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~-~~v~~v~~sp~~~~las~--s~D~~v~~W~~~ 370 (374)
+.-..++.+..++++||.||.|+.+..+.+...-+|. ..+.....+..++.|+++ |.|..++.|++.
T Consensus 108 Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 108 IPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred cccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 2333455678899999999999999888777666677 677777777888899988 999999999874
No 291
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.00 E-value=1.4e-05 Score=46.34 Aligned_cols=38 Identities=29% Similarity=0.657 Sum_probs=35.2
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEe
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWD 46 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd 46 (374)
++...+..|...|++++|++.+.++++++.|+.+++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 46778899999999999999999999999999999996
No 292
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.99 E-value=3.9e-05 Score=65.57 Aligned_cols=117 Identities=18% Similarity=0.275 Sum_probs=75.2
Q ss_pred CccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCC-----CCeEEEEECCCCCE-EEEEeCCCeEEE
Q 017296 251 HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLER-----PGISGTSIRPDSKI-AATAGWDRRVRI 324 (374)
Q Consensus 251 h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~-----~~v~~~~~sp~~~~-l~s~~~dg~v~i 324 (374)
|.--|++++|..+...++ .+.|=.|.||+++-..+..... .++-|. .-|++..|+|.... +.=.+..|+|++
T Consensus 171 H~yhiNSiS~NsD~et~l-SaDdLrINLWnl~i~D~sFnIV-DiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl 248 (460)
T COG5170 171 HPYHINSISFNSDKETLL-SADDLRINLWNLEIIDGSFNIV-DIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKL 248 (460)
T ss_pred ceeEeeeeeecCchheee-eccceeeeeccccccCCceEEE-eccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence 555577778866654444 4578899999998665544332 222221 23778899996443 333456899999
Q ss_pred EEccCCe------EEE--Ee--------cccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 325 YNYRKGS------ALA--IL--------KYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 325 wd~~~~~------~~~--~~--------~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
-|++... .+. ++ ..-...|+.+.|+++|+++++-+ =-+|+|||..
T Consensus 249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvn 309 (460)
T COG5170 249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVN 309 (460)
T ss_pred hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecc
Confidence 9997421 111 11 11234678899999999998754 4689999874
No 293
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=6.8e-05 Score=68.87 Aligned_cols=144 Identities=15% Similarity=0.221 Sum_probs=94.2
Q ss_pred EEEEEecCCcEEEEeccCCC------CceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeec
Q 017296 223 NVLAGYEDGSILVWDIRNPG------IPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINL 296 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~ 296 (374)
.+++++.|.+|++|.++..+ .+..+.+.|+.+|..+.|-.+.++ .+|.|+.|.+||-=- ++.....+...
T Consensus 749 SFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~--i~ScD~giHlWDPFi--gr~Laq~~dap 824 (1034)
T KOG4190|consen 749 SFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRS--IASCDGGIHLWDPFI--GRLLAQMEDAP 824 (1034)
T ss_pred ceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccce--eeeccCcceeecccc--cchhHhhhcCc
Confidence 48999999999999997432 245567889999999999776654 456799999998421 11110000000
Q ss_pred CCCCeEEE-EECC-CCCEEEEE-eCCCeEEEEEccCCeEEEEec-----ccCCceEEEEEeCCCCEEEEEeCCCcEEEec
Q 017296 297 ERPGISGT-SIRP-DSKIAATA-GWDRRVRIYNYRKGSALAILK-----YHHATCNAVSFSSDCKLMASASEDSTVALWE 368 (374)
Q Consensus 297 ~~~~v~~~-~~sp-~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~-----~h~~~v~~v~~sp~~~~las~s~D~~v~~W~ 368 (374)
....+..+ ++-. +..+++.| +...+|+++|.+.++-...++ +.-+.+.+++..|.|.++|.+=..|+|-+-|
T Consensus 825 k~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LD 904 (1034)
T KOG4190|consen 825 KEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILD 904 (1034)
T ss_pred ccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEe
Confidence 11112222 2222 44455556 568899999998876443332 2335688899999999999887778777665
Q ss_pred CC
Q 017296 369 LY 370 (374)
Q Consensus 369 ~~ 370 (374)
..
T Consensus 905 aR 906 (1034)
T KOG4190|consen 905 AR 906 (1034)
T ss_pred cC
Confidence 43
No 294
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.91 E-value=0.0017 Score=57.02 Aligned_cols=142 Identities=15% Similarity=0.243 Sum_probs=99.5
Q ss_pred CCcEEEEeccCCCCce--eeeecCccCeEEEEEecCCCceEEEec---CCeEEEEEcCCCCCeEEEEEeeecCCCCeEEE
Q 017296 230 DGSILVWDIRNPGIPL--TAMKVHLEPVLCLSIDESCNGGISGGA---DQKIVLYNLDHSTGSCVIKKEINLERPGISGT 304 (374)
Q Consensus 230 dg~i~iwdl~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~s~s~---D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~ 304 (374)
+..|..|++.+....+ ..+-.+....+-|+++++.+.|+++-. +|.|.-|.++...|...+..+.......-.-+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 6789999997432222 223346778899999999888877644 58899999987666665554433333444778
Q ss_pred EECCCCCEEEEEeC-CCeEEEEEccC-CeEEE--EecccCCc----------eEEEEEeCCCCEEEEE--eCCCcEEEec
Q 017296 305 SIRPDSKIAATAGW-DRRVRIYNYRK-GSALA--ILKYHHAT----------CNAVSFSSDCKLMASA--SEDSTVALWE 368 (374)
Q Consensus 305 ~~sp~~~~l~s~~~-dg~v~iwd~~~-~~~~~--~~~~h~~~----------v~~v~~sp~~~~las~--s~D~~v~~W~ 368 (374)
++++++++++++.. -|.|.++-++. |.... ....|.+. +....|.|++++|++. +.|. |.+++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dr-i~~y~ 173 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDR-IFLYD 173 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCce-EEEEE
Confidence 99999999988775 58999998855 43221 12235555 8889999999999876 5665 55677
Q ss_pred CCCC
Q 017296 369 LYPP 372 (374)
Q Consensus 369 ~~~~ 372 (374)
+.++
T Consensus 174 ~~dg 177 (346)
T COG2706 174 LDDG 177 (346)
T ss_pred cccC
Confidence 7643
No 295
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.91 E-value=4.2e-05 Score=44.19 Aligned_cols=38 Identities=45% Similarity=0.693 Sum_probs=34.0
Q ss_pred eEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEec
Q 017296 331 SALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWE 368 (374)
Q Consensus 331 ~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~ 368 (374)
+....+..|...|.++.|+++++++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45566778899999999999999999999999999996
No 296
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.85 E-value=0.0025 Score=59.67 Aligned_cols=174 Identities=12% Similarity=0.044 Sum_probs=90.4
Q ss_pred CCCCceEEEcccC--CCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEec--CCcE
Q 017296 158 AEGPKYMAVAGEQ--LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYE--DGSI 233 (374)
Q Consensus 158 ~~~~~~~~~~~~~--d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~--dg~i 233 (374)
+++++.++++... +..|.++|+.+++...-.... ..... ..+.| ++...+++.+. +..|
T Consensus 197 pDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~-------------g~~~~-~~~SP---DG~~la~~~~~~g~~~I 259 (419)
T PRK04043 197 NKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQ-------------GMLVV-SDVSK---DGSKLLLTMAPKGQPDI 259 (419)
T ss_pred CCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCC-------------CcEEe-eEECC---CCCEEEEEEccCCCcEE
Confidence 4444434443332 467888899888643222110 11111 11322 23333334333 3567
Q ss_pred EEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEec-CC--eEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCC
Q 017296 234 LVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA-DQ--KIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDS 310 (374)
Q Consensus 234 ~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~-D~--~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 310 (374)
.++|+... ....+..+........|+|++..++-.+. .+ .|.+.|++.+..... ... +.....|||||
T Consensus 260 y~~dl~~g--~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl-----t~~--g~~~~~~SPDG 330 (419)
T PRK04043 260 YLYDTNTK--TLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV-----VFH--GKNNSSVSTYK 330 (419)
T ss_pred EEEECCCC--cEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC-----ccC--CCcCceECCCC
Confidence 77787543 23334333332334568898887765553 33 455566654322111 111 11234899999
Q ss_pred CEEEEEeCC---------CeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEe
Q 017296 311 KIAATAGWD---------RRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASAS 359 (374)
Q Consensus 311 ~~l~s~~~d---------g~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s 359 (374)
++|+-.... ..|.+.|+.+++. ..+... .......|+|||+.|+..+
T Consensus 331 ~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~ 386 (419)
T PRK04043 331 NYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIK 386 (419)
T ss_pred CEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEE
Confidence 988755543 2577778877653 334332 2233578999999776554
No 297
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.73 E-value=0.023 Score=48.72 Aligned_cols=225 Identities=16% Similarity=0.137 Sum_probs=115.5
Q ss_pred CCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecCCCCCCCCCceeeeecceeeeeee
Q 017296 38 TGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIENGGLSSNPSLTIKTNSYHFCKLS 117 (374)
Q Consensus 38 ~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (374)
.+++|..||..+|+.+-............... ..++.+++.++.++.|..||..+|+.. ....
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~l~~~d~~tG~~~--------------W~~~ 63 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATA---VPDGGRVYVASGDGNLYALDAKTGKVL--------------WRFD 63 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEETE---EEETTEEEEEETTSEEEEEETTTSEEE--------------EEEE
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccceE---EEeCCEEEEEcCCCEEEEEECCCCCEE--------------EEee
Confidence 36889999998887654432210011111111 113457777789999999999988421 0000
Q ss_pred eeccccccccccCCCCcccccccCceeecCCCCCCCCCCCCCCCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCC
Q 017296 118 LVKEPYANAKQANEPKDCYEREVGETVDTDSLCDSKDDVPAEGPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSP 197 (374)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~ 197 (374)
+ ....... ....+..+++.+ .++.+..+|+++|+.+-...........
T Consensus 64 ~-~~~~~~~-----------------------------~~~~~~~v~v~~--~~~~l~~~d~~tG~~~W~~~~~~~~~~~ 111 (238)
T PF13360_consen 64 L-PGPISGA-----------------------------PVVDGGRVYVGT--SDGSLYALDAKTGKVLWSIYLTSSPPAG 111 (238)
T ss_dssp C-SSCGGSG-----------------------------EEEETTEEEEEE--TTSEEEEEETTTSCEEEEEEE-SSCTCS
T ss_pred c-cccccce-----------------------------eeeccccccccc--ceeeeEecccCCcceeeeeccccccccc
Confidence 0 0000000 000122233332 4568999999999987764221100000
Q ss_pred CcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeecCccC----------e-EEEEEecCCCc
Q 017296 198 NFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEP----------V-LCLSIDESCNG 266 (374)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~----------v-~~~~~~~~~~~ 266 (374)
.. ...... +. + ..++.+..++.|..+|+++. ..+-.......+ + ..+.+. ++ .
T Consensus 112 -~~---~~~~~~---~~-----~-~~~~~~~~~g~l~~~d~~tG-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~ 175 (238)
T PF13360_consen 112 -VR---SSSSPA---VD-----G-DRLYVGTSSGKLVALDPKTG-KLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-R 175 (238)
T ss_dssp -TB-----SEEE---EE-----T-TEEEEEETCSEEEEEETTTT-EEEEEEESSTT-SS--EEEETTEEEEEECC-TT-E
T ss_pred -cc---cccCce---Ee-----c-CEEEEEeccCcEEEEecCCC-cEEEEeecCCCCCCcceeeecccccceEEE-CC-E
Confidence 00 001111 11 1 24677777999999998763 333333332211 1 222223 22 4
Q ss_pred eEEEecCCe-EEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEE
Q 017296 267 GISGGADQK-IVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAI 335 (374)
Q Consensus 267 ~~s~s~D~~-i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~ 335 (374)
++.++.++. +.+ |+... ...... .. ..... ...+.+..|+.++.++.+..||+.+++...+
T Consensus 176 v~~~~~~g~~~~~-d~~tg--~~~w~~--~~--~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 176 VYVSSGDGRVVAV-DLATG--EKLWSK--PI--SGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EEEECCTSSEEEE-ETTTT--EEEEEE--CS--S-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred EEEEcCCCeEEEE-ECCCC--CEEEEe--cC--CCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 566666774 555 77643 322211 11 11222 1345667777777999999999999997754
No 298
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.72 E-value=0.024 Score=48.52 Aligned_cols=43 Identities=19% Similarity=0.247 Sum_probs=36.3
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEeccc
Q 017296 297 ERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYH 339 (374)
Q Consensus 297 ~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h 339 (374)
..++|..+++||||+.||+...+|++.+|++-.-++...+..+
T Consensus 228 ~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 228 EQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred CCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 4578999999999999999999999999999776666555433
No 299
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.71 E-value=0.011 Score=50.43 Aligned_cols=145 Identities=15% Similarity=0.163 Sum_probs=85.5
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeec-------CccCeEEEEEec-C-----CCceEEEecCCeEEEEEcCCCC---C
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKV-------HLEPVLCLSIDE-S-----CNGGISGGADQKIVLYNLDHST---G 286 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~-------h~~~v~~~~~~~-~-----~~~~~s~s~D~~i~lwd~~~~~---~ 286 (374)
.++.+...|+|++||+-. ..+..+.. -...|..|.|-+ . ..-|+.-..+|.++-+-+...+ .
T Consensus 57 lLa~a~S~G~i~vfdl~g--~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y 134 (282)
T PF15492_consen 57 LLAYAESTGTIRVFDLMG--SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGY 134 (282)
T ss_pred EEEEEcCCCeEEEEeccc--ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcc
Confidence 577788999999999953 22222211 124566666621 1 1124455566666666542211 1
Q ss_pred eEEEEEeeec-CCCCeEEEEECCCCCEEEEEeC-CCe----------EEEEEccCCeEEE--------------------
Q 017296 287 SCVIKKEINL-ERPGISGTSIRPDSKIAATAGW-DRR----------VRIYNYRKGSALA-------------------- 334 (374)
Q Consensus 287 ~~~~~~~~~~-~~~~v~~~~~sp~~~~l~s~~~-dg~----------v~iwd~~~~~~~~-------------------- 334 (374)
+......+.. ...+|.++.++|.-++|+.||. ... +.-|.+.++.+..
T Consensus 135 ~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~ 214 (282)
T PF15492_consen 135 QENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLL 214 (282)
T ss_pred eeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCcccccccccccee
Confidence 1111112222 2458999999999888766653 221 3446554332110
Q ss_pred ------Ee---cccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 335 ------IL---KYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 335 ------~~---~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
.+ ......|..|..||||+.||+..-+|.|.+|++
T Consensus 215 ~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~i 258 (282)
T PF15492_consen 215 RIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEI 258 (282)
T ss_pred eccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEec
Confidence 00 112457889999999999999999999999986
No 300
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.70 E-value=0.024 Score=54.53 Aligned_cols=70 Identities=17% Similarity=0.191 Sum_probs=52.7
Q ss_pred eEEEEECCCCCEEEE-EeCCCeEEEEEccCCeE------------EEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEe
Q 017296 301 ISGTSIRPDSKIAAT-AGWDRRVRIYNYRKGSA------------LAILKYHHATCNAVSFSSDCKLMASASEDSTVALW 367 (374)
Q Consensus 301 v~~~~~sp~~~~l~s-~~~dg~v~iwd~~~~~~------------~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W 367 (374)
...+.+||||++++. +..+.+|.|.|+.+.+. .....- .......+|.++|....|--.|+.|-.|
T Consensus 323 PHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kw 401 (635)
T PRK02888 323 PHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKW 401 (635)
T ss_pred ccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEE
Confidence 457899999998764 45589999999987542 222221 2344567999999988888999999999
Q ss_pred cCCC
Q 017296 368 ELYP 371 (374)
Q Consensus 368 ~~~~ 371 (374)
|+..
T Consensus 402 n~~~ 405 (635)
T PRK02888 402 NIEA 405 (635)
T ss_pred ehHH
Confidence 9853
No 301
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.69 E-value=0.01 Score=57.29 Aligned_cols=194 Identities=10% Similarity=0.134 Sum_probs=115.0
Q ss_pred ceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCC
Q 017296 162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNP 241 (374)
Q Consensus 162 ~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~ 241 (374)
..+++++...|.|-+||...+.....+.++. .....+|. .+........+++-+...+|-+|+..++
T Consensus 79 ~lliAsaD~~GrIil~d~~~~s~~~~l~~~~--------~~~qdl~W-----~~~rd~Srd~LlaIh~ss~lvLwntdtG 145 (1062)
T KOG1912|consen 79 QLLIASADISGRIILVDFVLASVINWLSHSN--------DSVQDLCW-----VPARDDSRDVLLAIHGSSTLVLWNTDTG 145 (1062)
T ss_pred ceeEEeccccCcEEEEEehhhhhhhhhcCCC--------cchhheee-----eeccCcchheeEEecCCcEEEEEEccCC
Confidence 4566777778889999988776655554431 11122221 1222223345666777889999987653
Q ss_pred CCceeeeecCccCeEEEEEec-CCCceEEEecCCeEEEEEcCCC-----CCeEEEEEee--------------ecCCC--
Q 017296 242 GIPLTAMKVHLEPVLCLSIDE-SCNGGISGGADQKIVLYNLDHS-----TGSCVIKKEI--------------NLERP-- 299 (374)
Q Consensus 242 ~~~~~~~~~h~~~v~~~~~~~-~~~~~~s~s~D~~i~lwd~~~~-----~~~~~~~~~~--------------~~~~~-- 299 (374)
..+=...+..+...|+.+|| +...+..-+..|.+-+-+.-.. .++......- +.+..
T Consensus 146 -~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~ 224 (1062)
T KOG1912|consen 146 -EKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTP 224 (1062)
T ss_pred -ceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCC
Confidence 33433445566777788876 3333333333444433332111 1111111000 00000
Q ss_pred -------CeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCC--EEEEEeCCCcEEEecC
Q 017296 300 -------GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCK--LMASASEDSTVALWEL 369 (374)
Q Consensus 300 -------~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~--~las~s~D~~v~~W~~ 369 (374)
....++|+|--+-++-...-+.+.++|++-..++.+..-..+.+.-+.+-|+++ .|+..-.||.+.||--
T Consensus 225 ~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvr 303 (1062)
T KOG1912|consen 225 ASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVR 303 (1062)
T ss_pred cchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEe
Confidence 012367788766666566788999999988788887766667777888888775 7888999999999953
No 302
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=0.0013 Score=63.50 Aligned_cols=130 Identities=18% Similarity=0.197 Sum_probs=91.0
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeE
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGIS 302 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~ 302 (374)
.++-|+-+|.|.+++.. +.+ .+...|... +.+|.+++|+|.||.+.+-.+......+.. ..+ ..+.
T Consensus 51 ~~~~GtH~g~v~~~~~~--~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~----df~-rpik 116 (846)
T KOG2066|consen 51 FFALGTHRGAVYLTTCQ--GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY----DFK-RPIK 116 (846)
T ss_pred eeeeccccceEEEEecC--Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE----ecC-Ccce
Confidence 46779999999999874 333 444445444 667888999999999999887654433322 222 3588
Q ss_pred EEEECCC-----CCEEEEEeCCCeEEEEEccC-C-eEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 303 GTSIRPD-----SKIAATAGWDRRVRIYNYRK-G-SALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 303 ~~~~sp~-----~~~l~s~~~dg~v~iwd~~~-~-~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
+++++|+ .+.+++||.-| +-++...= + +.-..+...+++|.++.| .|.++|=++.+| |+++|.-
T Consensus 117 sial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWand~G-v~vyd~~ 187 (846)
T KOG2066|consen 117 SIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWANDDG-VKVYDTP 187 (846)
T ss_pred eEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEecCCC-cEEEecc
Confidence 9999998 56789999888 66654321 1 111245666789999999 677999888666 7888763
No 303
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.62 E-value=0.04 Score=48.42 Aligned_cols=61 Identities=16% Similarity=0.249 Sum_probs=44.5
Q ss_pred CCeEEEEECCCCCEEEEEe-CCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCC
Q 017296 299 PGISGTSIRPDSKIAATAG-WDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDS 362 (374)
Q Consensus 299 ~~v~~~~~sp~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~ 362 (374)
..+-++++++++.+++.++ .-+.+.+||..+++.+.... -..+..++-.+++ +++|.+.-.
T Consensus 217 ~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~--l~D~cGva~~~~~-f~~ssG~G~ 278 (305)
T PF07433_consen 217 GYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP--LPDACGVAPTDDG-FLVSSGQGQ 278 (305)
T ss_pred CceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc--cCceeeeeecCCc-eEEeCCCcc
Confidence 4588999999998886555 56889999999999876543 2345566666665 777766544
No 304
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.54 E-value=0.0017 Score=63.50 Aligned_cols=138 Identities=16% Similarity=0.238 Sum_probs=95.7
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEec---------CCeEEEEEcCCCCCeEEEEEe
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA---------DQKIVLYNLDHSTGSCVIKKE 293 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~---------D~~i~lwd~~~~~~~~~~~~~ 293 (374)
.+.+|...|+|.+=|+++. .+..++..|.+.|..+.+.+ +.++++|. |.-+++||++..... ..
T Consensus 189 ~lf~G~t~G~V~LrD~~s~-~~iht~~aHs~siSDfDv~G--NlLitCG~S~R~~~l~~D~FvkVYDLRmmral----~P 261 (1118)
T KOG1275|consen 189 NLFCGDTRGTVFLRDPNSF-ETIHTFDAHSGSISDFDVQG--NLLITCGYSMRRYNLAMDPFVKVYDLRMMRAL----SP 261 (1118)
T ss_pred EEEeecccceEEeecCCcC-ceeeeeeccccceeeeeccC--CeEEEeecccccccccccchhhhhhhhhhhcc----CC
Confidence 5788999999999999864 56788999999998876654 56788764 677899998643110 01
Q ss_pred eecCCCCeEEEEECCC-CCEEEEEeCCCeEEEEEccC-CeE-EEEecccC--CceEEEEEeCCCCEEEEEeCCCcEEEec
Q 017296 294 INLERPGISGTSIRPD-SKIAATAGWDRRVRIYNYRK-GSA-LAILKYHH--ATCNAVSFSSDCKLMASASEDSTVALWE 368 (374)
Q Consensus 294 ~~~~~~~v~~~~~sp~-~~~l~s~~~dg~v~iwd~~~-~~~-~~~~~~h~--~~v~~v~~sp~~~~las~s~D~~v~~W~ 368 (374)
+..+. +-.=+.|+|- ...++..+..|...+-|..+ +++ ...+.-|+ ..+....+|++|..||.+-.+|.|.+|.
T Consensus 262 I~~~~-~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 262 IQFPY-GPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccccc-CchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 11111 1123557774 34567788889999887321 121 22222233 4589999999999999999999999997
No 305
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.53 E-value=0.15 Score=52.72 Aligned_cols=116 Identities=17% Similarity=0.216 Sum_probs=77.3
Q ss_pred CccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCC-CCeEEEEECCC-CCEEEEEeCCCeEEEEEc-
Q 017296 251 HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLER-PGISGTSIRPD-SKIAATAGWDRRVRIYNY- 327 (374)
Q Consensus 251 h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~-~~v~~~~~sp~-~~~l~s~~~dg~v~iwd~- 327 (374)
....|..+.++.+...||.--.|. |.||-.. ...+-++.++.... ..+..+.|+|. ...+...+.+|.+..++.
T Consensus 303 ~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~--NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~ 379 (928)
T PF04762_consen 303 EEEKVIELAWNSDSEILAVWLEDR-VQLWTRS--NYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFA 379 (928)
T ss_pred CCceeeEEEECCCCCEEEEEecCC-ceEEEee--CCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEE
Confidence 356789999999888777655444 9999763 44556666666543 23445889985 334555666566655433
Q ss_pred ---cCC----------------eEE----------------EEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 328 ---RKG----------------SAL----------------AILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 328 ---~~~----------------~~~----------------~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
..+ ..+ ..+. -+..|..++|++++..+|.-..|+.+.+|.+.
T Consensus 380 ~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~ 456 (928)
T PF04762_consen 380 WDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWD 456 (928)
T ss_pred EEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeCCCCeEEEEECCCCEEEEEec
Confidence 211 111 1111 24679999999999889999999999999853
No 306
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.53 E-value=0.0001 Score=71.49 Aligned_cols=52 Identities=21% Similarity=0.275 Sum_probs=45.4
Q ss_pred CCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeee
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHS 60 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~ 60 (374)
++..+++.|...-+|++|+...+.|+.|+..|.|++++..+|........|.
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~ 1143 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQ 1143 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccc
Confidence 5778899999999999999999999999999999999999987655554453
No 307
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.53 E-value=0.002 Score=60.23 Aligned_cols=73 Identities=15% Similarity=0.169 Sum_probs=58.6
Q ss_pred CccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccC
Q 017296 251 HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRK 329 (374)
Q Consensus 251 h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~ 329 (374)
....+.|.+++|+...++.|+.||+|++||.....-... + ..-....++|||+|.+++.|+..|.+.+||+.-
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-----k-a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-----K-AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-----e-ecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 567899999999999999999999999999865421111 1 112356789999999999999999999999963
No 308
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.52 E-value=0.0043 Score=56.46 Aligned_cols=127 Identities=13% Similarity=0.184 Sum_probs=89.7
Q ss_pred EEEEecCC-cEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeE
Q 017296 224 VLAGYEDG-SILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGIS 302 (374)
Q Consensus 224 ~~~gs~dg-~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~ 302 (374)
++.|..|| .|-+||.+.. .+..+......|.++..++++..++.+-....+.+.|++.++.+..- +....-|.
T Consensus 374 ~vigt~dgD~l~iyd~~~~--e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~id----kS~~~lIt 447 (668)
T COG4946 374 DVIGTNDGDKLGIYDKDGG--EVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLID----KSEYGLIT 447 (668)
T ss_pred eEEeccCCceEEEEecCCc--eEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEec----ccccceeE
Confidence 67888898 8999998753 34555667789999999999987777766677888888755433221 12234588
Q ss_pred EEEECCCCCEEEEEeCC----CeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEE
Q 017296 303 GTSIRPDSKIAATAGWD----RRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMAS 357 (374)
Q Consensus 303 ~~~~sp~~~~l~s~~~d----g~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las 357 (374)
...+||+++++|=+--+ ..|+++|+..++....- ...+.=.+=||.||+++|-.
T Consensus 448 df~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT-T~ta~DfsPaFD~d~ryLYf 505 (668)
T COG4946 448 DFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT-TPTAYDFSPAFDPDGRYLYF 505 (668)
T ss_pred EEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEec-CCcccccCcccCCCCcEEEE
Confidence 99999999999866544 47999999887765432 12222234478899997643
No 309
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.43 E-value=0.0092 Score=59.34 Aligned_cols=148 Identities=15% Similarity=0.121 Sum_probs=93.5
Q ss_pred CCceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCC---CCceEEEEEecCCcEEEE
Q 017296 160 GPKYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKS---QGFVNVLAGYEDGSILVW 236 (374)
Q Consensus 160 ~~~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~gs~dg~i~iw 236 (374)
+...++......+.+.-.|+++|+.+..-.-+.. .. +..+.++.. ......+.|-.++.|.-|
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~---------~~-----v~~~~p~~K~aqlt~e~tflGls~n~lfri 557 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDD---------IP-----VVDIAPDSKFAQLTNEQTFLGLSDNSLFRI 557 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCC---------cc-----eeEecccccccccCCCceEEEECCCceEEe
Confidence 3345566656667888889999997765432210 00 111222210 001135679899999999
Q ss_pred eccCCCCceeeeec----CccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCE
Q 017296 237 DIRNPGIPLTAMKV----HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKI 312 (374)
Q Consensus 237 dl~~~~~~~~~~~~----h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 312 (374)
|+|..+..+..-+. ......|++-..+| .+|.||.+|.|||||--+.. ....+..-...|..+.++.||++
T Consensus 558 DpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~----AKT~lp~lG~pI~~iDvt~DGkw 632 (794)
T PF08553_consen 558 DPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKR----AKTALPGLGDPIIGIDVTADGKW 632 (794)
T ss_pred ccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchh----hhhcCCCCCCCeeEEEecCCCcE
Confidence 99875433322122 23467888888777 58999999999999842211 11122233467999999999999
Q ss_pred EEEEeCCCeEEEEEc
Q 017296 313 AATAGWDRRVRIYNY 327 (374)
Q Consensus 313 l~s~~~dg~v~iwd~ 327 (374)
|+++| +..+.+.+.
T Consensus 633 ilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 633 ILATC-KTYLLLIDT 646 (794)
T ss_pred EEEee-cceEEEEEE
Confidence 99776 667778875
No 310
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.32 E-value=0.084 Score=45.17 Aligned_cols=175 Identities=18% Similarity=0.149 Sum_probs=99.6
Q ss_pred cCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceee-
Q 017296 169 EQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA- 247 (374)
Q Consensus 169 ~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~- 247 (374)
..++.+..||..+|+.+........ . ... .. . ..+ .++.++.++.|..+|.++.. .+-.
T Consensus 43 ~~~~~l~~~d~~tG~~~W~~~~~~~----~------~~~-~~--~----~~~--~v~v~~~~~~l~~~d~~tG~-~~W~~ 102 (238)
T PF13360_consen 43 SGDGNLYALDAKTGKVLWRFDLPGP----I------SGA-PV--V----DGG--RVYVGTSDGSLYALDAKTGK-VLWSI 102 (238)
T ss_dssp ETTSEEEEEETTTSEEEEEEECSSC----G------GSG-EE--E----ETT--EEEEEETTSEEEEEETTTSC-EEEEE
T ss_pred cCCCEEEEEECCCCCEEEEeecccc----c------cce-ee--e----ccc--ccccccceeeeEecccCCcc-eeeee
Confidence 5678999999999987766542110 0 000 00 0 011 46677788899999987643 3332
Q ss_pred eecCc-----cCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCC--------CeEEEEECCCCCEEE
Q 017296 248 MKVHL-----EPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERP--------GISGTSIRPDSKIAA 314 (374)
Q Consensus 248 ~~~h~-----~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~--------~v~~~~~sp~~~~l~ 314 (374)
..... .......+. +..++.+..++.+..+|++. ++............ ....-.+..++ .+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~l~~~d~~t--G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~ 177 (238)
T PF13360_consen 103 YLTSSPPAGVRSSSSPAVD--GDRLYVGTSSGKLVALDPKT--GKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVY 177 (238)
T ss_dssp EE-SSCTCSTB--SEEEEE--TTEEEEEETCSEEEEEETTT--TEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEE
T ss_pred ccccccccccccccCceEe--cCEEEEEeccCcEEEEecCC--CcEEEEeecCCCCCCcceeeecccccceEEECC-EEE
Confidence 12111 112223333 44567777799999999864 44443333321110 11222233345 555
Q ss_pred EEeCCCe-EEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 315 TAGWDRR-VRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 315 s~~~dg~-v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
.++.++. +.+ |+.+++.+.... ...+.. ...+++..|+.++.|+.|..||+..+
T Consensus 178 ~~~~~g~~~~~-d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 178 VSSGDGRVVAV-DLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTG 232 (238)
T ss_dssp EECCTSSEEEE-ETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEETTTT
T ss_pred EEcCCCeEEEE-ECCCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEECCCC
Confidence 5666764 666 999998765333 333332 14567788887779999999998764
No 311
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.31 E-value=0.15 Score=47.63 Aligned_cols=134 Identities=13% Similarity=0.054 Sum_probs=76.1
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeE
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGIS 302 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~ 302 (374)
.++.++.+|.+..+|+++... +=.. .......+... +..++.++.++.+...|.+.. ........... ....
T Consensus 258 ~vy~~~~~g~l~ald~~tG~~-~W~~--~~~~~~~~~~~--~~~vy~~~~~g~l~ald~~tG--~~~W~~~~~~~-~~~~ 329 (394)
T PRK11138 258 VVYALAYNGNLVALDLRSGQI-VWKR--EYGSVNDFAVD--GGRIYLVDQNDRVYALDTRGG--VELWSQSDLLH-RLLT 329 (394)
T ss_pred EEEEEEcCCeEEEEECCCCCE-EEee--cCCCccCcEEE--CCEEEEEcCCCeEEEEECCCC--cEEEcccccCC-Cccc
Confidence 466677889999999876432 2111 11111112222 234667778899988887543 32222111000 1111
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEE-EEEeCCCCEEEEEeCCCcEEEec
Q 017296 303 GTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNA-VSFSSDCKLMASASEDSTVALWE 368 (374)
Q Consensus 303 ~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~-v~~sp~~~~las~s~D~~v~~W~ 368 (374)
+..+ .+.+|+.++.||.+...|..+|+.+...+-+...+.+ -.+ .++ .|..++.||.|..++
T Consensus 330 sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~-~~~-~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 330 APVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV-ADD-KLLIQARDGTVYAIT 392 (394)
T ss_pred CCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE-ECC-EEEEEeCCceEEEEe
Confidence 1122 2446777899999999999999988776544333332 122 244 667778999887754
No 312
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.24 E-value=0.11 Score=51.12 Aligned_cols=117 Identities=15% Similarity=0.219 Sum_probs=74.0
Q ss_pred EEEEEecCCcEEEEec---cCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCC
Q 017296 223 NVLAGYEDGSILVWDI---RNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERP 299 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl---~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~ 299 (374)
.++.|..||.|..+.= |..+....-...-.+||+.+.+-.++..++-...-..|.+|.+...+.. ...+..+..
T Consensus 139 ~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~---~~~ld~~G~ 215 (933)
T KOG2114|consen 139 TIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPS---LKVLDNNGI 215 (933)
T ss_pred EEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcc---eeeeccCCc
Confidence 4778888998888742 2212212212224679999999655555455556678999998754411 222445566
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEec-ccCCce
Q 017296 300 GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILK-YHHATC 343 (374)
Q Consensus 300 ~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~h~~~v 343 (374)
.+.+.+|++....+++++ ...+.+|+....++..++. +|....
T Consensus 216 ~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk~~ 259 (933)
T KOG2114|consen 216 SLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEKKEM 259 (933)
T ss_pred cceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCCCeEEE
Confidence 788888887666455554 5578889887666666676 666433
No 313
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.19 E-value=0.048 Score=47.16 Aligned_cols=139 Identities=14% Similarity=0.112 Sum_probs=81.9
Q ss_pred EEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEe-cCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeec-CCCCe
Q 017296 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSID-ESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINL-ERPGI 301 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~-~~~~v 301 (374)
+++-...+.|.-||..... ...+. ......+.++ ++ ..++.+..++ +.++|.+...-.......... .....
T Consensus 15 ~~~D~~~~~i~~~~~~~~~--~~~~~--~~~~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ 88 (246)
T PF08450_consen 15 YWVDIPGGRIYRVDPDTGE--VEVID--LPGPNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRP 88 (246)
T ss_dssp EEEETTTTEEEEEETTTTE--EEEEE--SSSEEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEE
T ss_pred EEEEcCCCEEEEEECCCCe--EEEEe--cCCCceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCC
Confidence 4455567888889886532 22222 2226677777 45 4556665555 455577543222222111011 23457
Q ss_pred EEEEECCCCCEEEEEeCC--------CeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEE-EEEeCCCcEEEecCC
Q 017296 302 SGTSIRPDSKIAATAGWD--------RRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLM-ASASEDSTVALWELY 370 (374)
Q Consensus 302 ~~~~~sp~~~~l~s~~~d--------g~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l-as~s~D~~v~~W~~~ 370 (374)
..+++.|+|++.++.... |.|..++.. ++ ...+...-...+.++|+||++.| ++-+..+.|..+++.
T Consensus 89 ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~-~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~ 164 (246)
T PF08450_consen 89 NDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK-VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLD 164 (246)
T ss_dssp EEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE-EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEE
T ss_pred ceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce-EEEEecCcccccceEECCcchheeecccccceeEEEecc
Confidence 789999999977766544 456667665 44 33333345678999999999965 566777877777764
No 314
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.19 E-value=0.0015 Score=62.29 Aligned_cols=141 Identities=16% Similarity=0.147 Sum_probs=98.1
Q ss_pred EEEEEecCCcEEEEeccCCCC--------------ceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeE
Q 017296 223 NVLAGYEDGSILVWDIRNPGI--------------PLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSC 288 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~--------------~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~ 288 (374)
+++.|+.||.+++-.+.+... .-+++.||...|.-+.++...+-+-|...+|-|.+|=+-.+ ++
T Consensus 28 yIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykg--sW 105 (1189)
T KOG2041|consen 28 YIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKG--SW 105 (1189)
T ss_pred eEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecc--cH
Confidence 588899999999988754211 12457899999999999876666667778999999976322 21
Q ss_pred EEEEee--ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEE--EecccCCceEEEEEeCCCCEEEEEeCCCcE
Q 017296 289 VIKKEI--NLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALA--ILKYHHATCNAVSFSSDCKLMASASEDSTV 364 (374)
Q Consensus 289 ~~~~~~--~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~--~~~~h~~~v~~v~~sp~~~~las~s~D~~v 364 (374)
. .++ +...+-|.+++|.-||+.|.....||-|-+=.+ +|.++. .+++. ....+.|++|.+.+..+=+.|.+
T Consensus 106 ~--EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsv-dGNRIwgKeLkg~--~l~hv~ws~D~~~~Lf~~ange~ 180 (1189)
T KOG2041|consen 106 C--EEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSV-DGNRIWGKELKGQ--LLAHVLWSEDLEQALFKKANGET 180 (1189)
T ss_pred H--HHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEee-ccceecchhcchh--eccceeecccHHHHHhhhcCCcE
Confidence 1 111 122356889999999999998999998866555 344332 22221 22467899999877777778888
Q ss_pred EEecCC
Q 017296 365 ALWELY 370 (374)
Q Consensus 365 ~~W~~~ 370 (374)
.+++-+
T Consensus 181 hlydnq 186 (1189)
T KOG2041|consen 181 HLYDNQ 186 (1189)
T ss_pred EEeccc
Confidence 887753
No 315
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.13 E-value=0.0026 Score=60.53 Aligned_cols=114 Identities=19% Similarity=0.141 Sum_probs=80.7
Q ss_pred CeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCe--
Q 017296 254 PVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGS-- 331 (374)
Q Consensus 254 ~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~-- 331 (374)
.+.--+++....+++.|+.-|.+.+++-.. +.+...+. ......+...++|++..++|.|+..|.|.++-++...
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~--~~~~~~~~-~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHT--GEMRKLKN-EGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCc--hhhhcccc-cCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 344444566667789999999999997542 22222111 1122335567899999999999999999999876532
Q ss_pred -EEEE---ecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 332 -ALAI---LKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 332 -~~~~---~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
.... -+.|...|+++.|++|++.+.+|..-|.|.+-.++
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~ 154 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELD 154 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEec
Confidence 1111 13478899999999999999999999998876553
No 316
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.10 E-value=0.2 Score=45.25 Aligned_cols=133 Identities=17% Similarity=0.226 Sum_probs=83.6
Q ss_pred CcEEEEeccCC---CCceeee--ecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEE
Q 017296 231 GSILVWDIRNP---GIPLTAM--KVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTS 305 (374)
Q Consensus 231 g~i~iwdl~~~---~~~~~~~--~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~ 305 (374)
|.|.+|++.+. ...+..+ .....+|+++..-.. . +..+..+.|.+|+++... ........... ..+.++.
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~--~-lv~~~g~~l~v~~l~~~~-~l~~~~~~~~~-~~i~sl~ 136 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNG--R-LVVAVGNKLYVYDLDNSK-TLLKKAFYDSP-FYITSLS 136 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETT--E-EEEEETTEEEEEEEETTS-SEEEEEEE-BS-SSEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCC--E-EEEeecCEEEEEEccCcc-cchhhheecce-EEEEEEe
Confidence 88999999762 1122222 234678988877632 2 445556899999997654 22322233222 2455554
Q ss_pred ECCCCCEEEEEeCCCeEEEEEccC-CeEEEEecc--cCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 306 IRPDSKIAATAGWDRRVRIYNYRK-GSALAILKY--HHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 306 ~sp~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~--h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
.. +.+|+.|...+.+.++..+. ++.+..+.. ....+.++.|-+|++.++.+..+|.+.++...
T Consensus 137 ~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 137 VF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred cc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 44 45889999999998886543 443444433 34568888898777899999999999998774
No 317
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=96.99 E-value=0.016 Score=56.98 Aligned_cols=58 Identities=12% Similarity=0.139 Sum_probs=42.0
Q ss_pred EEEEEecCCcEEEEeccCCCCc-eeeeecC--ccCeEEEEEecCCCceEEEecCCeEEEEE
Q 017296 223 NVLAGYEDGSILVWDIRNPGIP-LTAMKVH--LEPVLCLSIDESCNGGISGGADQKIVLYN 280 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~-~~~~~~h--~~~v~~~~~~~~~~~~~s~s~D~~i~lwd 280 (374)
.+++.|+.|+..+-|...-..+ ......+ ...+..+.+++.++.++.|..+|.|.+|.
T Consensus 280 ~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 280 RLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 5778899999999993222222 2222223 33488888899999999999999999997
No 318
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.89 E-value=0.038 Score=53.74 Aligned_cols=139 Identities=14% Similarity=0.186 Sum_probs=90.8
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecC-----CCceEEEecCCeEEEEEcCCCCCeEEEEEeeecC
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDES-----CNGGISGGADQKIVLYNLDHSTGSCVIKKEINLE 297 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~-----~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~ 297 (374)
+++++|.||.|.|..+-++.. ..++. ...|+..++++|+ ...+++||.-| +.++.-+--..+-. ......
T Consensus 85 y~asCS~DGkv~I~sl~~~~~-~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~--v~l~~~ 159 (846)
T KOG2066|consen 85 YVASCSDDGKVVIGSLFTDDE-ITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDS--VVLSEG 159 (846)
T ss_pred eEEEecCCCcEEEeeccCCcc-ceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccc--eeeecC
Confidence 699999999999998866433 22222 3578999999887 34678888888 77764221111000 012233
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccC------CceEEEEEeCCCCEEEEEeCCCcEEEecCCC
Q 017296 298 RPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHH------ATCNAVSFSSDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 298 ~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~------~~v~~v~~sp~~~~las~s~D~~v~~W~~~~ 371 (374)
.+.|.+++|. |.+||=+. |--|+++|+.+.+.+..++-.. .....+.|.++.++++ |+-.+|+|..+..
T Consensus 160 eG~I~~i~W~--g~lIAWan-d~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI--GW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 160 EGPIHSIKWR--GNLIAWAN-DDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI--GWGDSVKICSIKK 234 (846)
T ss_pred ccceEEEEec--CcEEEEec-CCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE--ecCCeEEEEEEec
Confidence 4568888887 55777666 4458899998887776554222 2345678887766655 6667788887753
No 319
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.86 E-value=0.037 Score=55.19 Aligned_cols=139 Identities=15% Similarity=0.159 Sum_probs=89.7
Q ss_pred EecCCcEEEEeccCCCCceeeeecCccC-eEEEEEecCC-----CceEEEecCCeEEEEEcCCCCCeEEEEEeeec-CCC
Q 017296 227 GYEDGSILVWDIRNPGIPLTAMKVHLEP-VLCLSIDESC-----NGGISGGADQKIVLYNLDHSTGSCVIKKEINL-ERP 299 (374)
Q Consensus 227 gs~dg~i~iwdl~~~~~~~~~~~~h~~~-v~~~~~~~~~-----~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~-~~~ 299 (374)
....+.|.-.||+. +..+...+.|... |..++-+.+. ..-..|=.++.+..||.+-...+.+......+ ...
T Consensus 500 ~~~~~~ly~mDLe~-GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~ 578 (794)
T PF08553_consen 500 PNNPNKLYKMDLER-GKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKN 578 (794)
T ss_pred CCCCCceEEEecCC-CcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCC
Confidence 44567788888875 4556666666543 6666554221 22356778889999998755433332111111 122
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEE-ecccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 300 GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAI-LKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 300 ~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~-~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
...+++-+.+| +||.|+.+|.||+||. .|+..++ +.+-..+|.+|..+.||++|+... +..+-|.+.
T Consensus 579 ~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 579 NFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred CceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 35667777777 6888999999999995 4554544 445568999999999999765444 455555554
No 320
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.84 E-value=0.031 Score=54.78 Aligned_cols=146 Identities=18% Similarity=0.181 Sum_probs=91.2
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCccC-eEEEEEecCCCceEEEecCC-----eEEEEEcCCCC----CeEE---
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEP-VLCLSIDESCNGGISGGADQ-----KIVLYNLDHST----GSCV--- 289 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~-v~~~~~~~~~~~~~s~s~D~-----~i~lwd~~~~~----~~~~--- 289 (374)
.++.|+.+|.|-+.+-. -...+.++.+... |..+....+...+++-+.|+ .+++||++... ..+.
T Consensus 37 ~vvigt~~G~V~~Ln~s--~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ 114 (933)
T KOG2114|consen 37 SVVIGTADGRVVILNSS--FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEH 114 (933)
T ss_pred eEEEeeccccEEEeccc--ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeee
Confidence 58889999988887642 1223556666666 55555544444556655553 59999997542 2233
Q ss_pred EEEeeec--CCCCeEEEEECCCCCEEEEEeCCCeEEEEEc--cC--CeEEEEecccCCceEEEEEeCCCCEEEEEeCCCc
Q 017296 290 IKKEINL--ERPGISGTSIRPDSKIAATAGWDRRVRIYNY--RK--GSALAILKYHHATCNAVSFSSDCKLMASASEDST 363 (374)
Q Consensus 290 ~~~~~~~--~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~--~~--~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~ 363 (374)
....... ....+.++++|.+-+.||+|-.||.|-.+.- .. +....-...-.++|+.+++..+++.+..+..-..
T Consensus 115 ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~ 194 (933)
T KOG2114|consen 115 RIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQ 194 (933)
T ss_pred eeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecce
Confidence 1122122 2356788999999999999999999987722 11 1211111123469999999999986433444466
Q ss_pred EEEecCC
Q 017296 364 VALWELY 370 (374)
Q Consensus 364 v~~W~~~ 370 (374)
|.++.++
T Consensus 195 V~~y~l~ 201 (933)
T KOG2114|consen 195 VMLYSLS 201 (933)
T ss_pred eEEEEec
Confidence 7777664
No 321
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.82 E-value=0.003 Score=61.39 Aligned_cols=70 Identities=13% Similarity=0.201 Sum_probs=63.4
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 301 ISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 301 v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
+.++||+|..-.++.|=.-|.+.+|...+.+.......|+.+|..+.||++|..|.|+..-|.|.+|.++
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 6689999998888888888999999998888777777899999999999999999999999999999875
No 322
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.0041 Score=55.38 Aligned_cols=76 Identities=11% Similarity=0.215 Sum_probs=64.0
Q ss_pred CCCCeEEEEECCCCC-EEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCC-EEEEEeCCCcEEEecCCCCC
Q 017296 297 ERPGISGTSIRPDSK-IAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCK-LMASASEDSTVALWELYPPH 373 (374)
Q Consensus 297 ~~~~v~~~~~sp~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~-~las~s~D~~v~~W~~~~~~ 373 (374)
+...|+.++|||... ++..++.+.+|+|.|+++......+..| +.+++.+|.-|.+ +|-.|-..|.|.++|+..|+
T Consensus 192 ~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 192 EGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred cchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence 445688999999766 7889999999999999988877777777 7999999998877 55566789999999997664
No 323
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.0072 Score=56.98 Aligned_cols=73 Identities=18% Similarity=0.177 Sum_probs=63.5
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceE-EEEEeCCCCEEEEEeCCCcEEEecCCCCC
Q 017296 300 GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCN-AVSFSSDCKLMASASEDSTVALWELYPPH 373 (374)
Q Consensus 300 ~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~-~v~~sp~~~~las~s~D~~v~~W~~~~~~ 373 (374)
.+.-+.|+|--.++|.+..+|.+-+..+. -+++.++.-|...+. +++|.|||++||.|=.||+|++-|++-|+
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence 35667889988899999999999888776 677888887777776 99999999999999999999999998775
No 324
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=96.69 E-value=0.044 Score=56.50 Aligned_cols=133 Identities=17% Similarity=0.156 Sum_probs=85.8
Q ss_pred EEEEecCCcEEEE----eccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCC-------------CCC
Q 017296 224 VLAGYEDGSILVW----DIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH-------------STG 286 (374)
Q Consensus 224 ~~~gs~dg~i~iw----dl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~-------------~~~ 286 (374)
++.+..+|.|.+. |.... .......-...|.+++++|++..++....++++.+-+-+. +..
T Consensus 90 l~~~~~~Gdi~~~~~~~~~~~~--~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~ 167 (928)
T PF04762_consen 90 LCIALASGDIILVREDPDPDED--EIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGES 167 (928)
T ss_pred EEEEECCceEEEEEccCCCCCc--eeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCC
Confidence 6677888999988 54321 1222222356899999999998888888888887744321 000
Q ss_pred eEEE-----------------------EE--------eeecCCCCeEEEEECCCCCEEEEEeC----C--CeEEEEEccC
Q 017296 287 SCVI-----------------------KK--------EINLERPGISGTSIRPDSKIAATAGW----D--RRVRIYNYRK 329 (374)
Q Consensus 287 ~~~~-----------------------~~--------~~~~~~~~v~~~~~sp~~~~l~s~~~----d--g~v~iwd~~~ 329 (374)
+++. .. .+. ..++-..++|..||+|+|..+. . +.+|||+.+
T Consensus 168 ~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re- 245 (928)
T PF04762_consen 168 KHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE- 245 (928)
T ss_pred ceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-
Confidence 0000 00 011 2234567899999999987764 2 679999874
Q ss_pred CeEEEEecccCCceEEEEEeCCCCEEEEEeC
Q 017296 330 GSALAILKYHHATCNAVSFSSDCKLMASASE 360 (374)
Q Consensus 330 ~~~~~~~~~h~~~v~~v~~sp~~~~las~s~ 360 (374)
|+...+-..-.+--..++|.|.|.+||+...
T Consensus 246 G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~ 276 (928)
T PF04762_consen 246 GELQSTSEPVDGLEGALSWRPSGNLIASSQR 276 (928)
T ss_pred ceEEeccccCCCccCCccCCCCCCEEEEEEE
Confidence 7655544433334456899999999999764
No 325
>PRK04043 tolB translocation protein TolB; Provisional
Probab=96.67 E-value=0.29 Score=46.04 Aligned_cols=130 Identities=11% Similarity=0.000 Sum_probs=72.5
Q ss_pred CcEEEEeccCCCCceeeeecCccCeEEEEEecCCCc-eEEEec---CCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEE
Q 017296 231 GSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNG-GISGGA---DQKIVLYNLDHSTGSCVIKKEINLERPGISGTSI 306 (374)
Q Consensus 231 g~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~s~s~---D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~ 306 (374)
..|.+-|..- .. .+.+.... ......++|++.. ++..+. +..|.++|+.+....... ..........|
T Consensus 169 ~~l~~~d~dg-~~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-----~~~g~~~~~~~ 240 (419)
T PRK04043 169 SNIVLADYTL-TY-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-----SSQGMLVVSDV 240 (419)
T ss_pred ceEEEECCCC-Cc-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-----cCCCcEEeeEE
Confidence 3566655532 22 22232233 6778888998874 444333 346777777544322221 12233456789
Q ss_pred CCCCCEEE-EEeCC--CeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEe-CCCc--EEEecC
Q 017296 307 RPDSKIAA-TAGWD--RRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASAS-EDST--VALWEL 369 (374)
Q Consensus 307 sp~~~~l~-s~~~d--g~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s-~D~~--v~~W~~ 369 (374)
||||+.|+ +.+.+ ..|.++|+.+++ ...+..+........|+|||+.|+-.+ ..+. |.+.++
T Consensus 241 SPDG~~la~~~~~~g~~~Iy~~dl~~g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl 308 (419)
T PRK04043 241 SKDGSKLLLTMAPKGQPDIYLYDTNTKT-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKL 308 (419)
T ss_pred CCCCCEEEEEEccCCCcEEEEEECCCCc-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEEC
Confidence 99998765 44434 457777876665 344444443334457999999776554 3443 444444
No 326
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.59 E-value=0.024 Score=52.82 Aligned_cols=136 Identities=12% Similarity=0.120 Sum_probs=84.9
Q ss_pred EEEEecCCc--EEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCe
Q 017296 224 VLAGYEDGS--ILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGI 301 (374)
Q Consensus 224 ~~~gs~dg~--i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v 301 (374)
+++..+.+. .-.|+...+ .+........-.-+.+.++|.|.+|+|-...| |.+|-=+.. ... .+....++
T Consensus 181 f~v~~d~~~~~svfwN~~~n-~p~~ie~RenWTetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f--~r~----~RF~Hp~V 252 (698)
T KOG2314|consen 181 FVVQDDVKTTVSVFWNSKFN-EPSLIEERENWTETYVRWSPKGTYLVTFHKQG-IALWGGESF--DRI----QRFYHPGV 252 (698)
T ss_pred EEEEecCcceeEEEccccCC-chhhhhhhhcceeeeEEecCCceEEEEEeccc-eeeecCccH--HHH----HhccCCCc
Confidence 444333333 566776432 22222222344567788999999888876666 888832111 111 11122568
Q ss_pred EEEEECCCCCEEEEEeCC-----------CeEEEEEccCCeEEEEecc--cCCceE-EEEEeCCCCEEEEEeCCCcEEEe
Q 017296 302 SGTSIRPDSKIAATAGWD-----------RRVRIYNYRKGSALAILKY--HHATCN-AVSFSSDCKLMASASEDSTVALW 367 (374)
Q Consensus 302 ~~~~~sp~~~~l~s~~~d-----------g~v~iwd~~~~~~~~~~~~--h~~~v~-~v~~sp~~~~las~s~D~~v~~W 367 (374)
.-+.|||+.+||++-+.. ..+.|||+.+|.....+.. ....++ -..||-|++++|--..| .|.|+
T Consensus 253 q~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIy 331 (698)
T KOG2314|consen 253 QFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIY 331 (698)
T ss_pred eeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEE
Confidence 889999999999987642 5789999999987766654 222333 35899999999876554 45555
Q ss_pred c
Q 017296 368 E 368 (374)
Q Consensus 368 ~ 368 (374)
+
T Consensus 332 E 332 (698)
T KOG2314|consen 332 E 332 (698)
T ss_pred e
Confidence 4
No 327
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.49 E-value=0.49 Score=40.87 Aligned_cols=106 Identities=14% Similarity=0.177 Sum_probs=73.7
Q ss_pred ccCeEEEEEecCCCceE-EEecCCeEEEEEcCCCCCeEEEEEe-eecCC--CCeEEEEECCCCCEEEEEeCCCeEEEEEc
Q 017296 252 LEPVLCLSIDESCNGGI-SGGADQKIVLYNLDHSTGSCVIKKE-INLER--PGISGTSIRPDSKIAATAGWDRRVRIYNY 327 (374)
Q Consensus 252 ~~~v~~~~~~~~~~~~~-s~s~D~~i~lwd~~~~~~~~~~~~~-~~~~~--~~v~~~~~sp~~~~l~s~~~dg~v~iwd~ 327 (374)
....+.++|++++..++ +-+..+.|..++++........... ..... .....+++..+|++.++.-..+.|.++|.
T Consensus 133 ~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p 212 (246)
T PF08450_consen 133 LGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDP 212 (246)
T ss_dssp ESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEET
T ss_pred cccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECC
Confidence 34567899999988665 6677889999998755442221111 11122 23678999999998887778999999998
Q ss_pred cCCeEEEEecccCCceEEEEEe-CCCC-EEEEE
Q 017296 328 RKGSALAILKYHHATCNAVSFS-SDCK-LMASA 358 (374)
Q Consensus 328 ~~~~~~~~~~~h~~~v~~v~~s-p~~~-~las~ 358 (374)
+ |+.+..+.-....+++++|. |+.+ +++|.
T Consensus 213 ~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 213 D-GKLLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp T-SCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred C-ccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 6 88888777665689999995 6655 44444
No 328
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.42 E-value=0.24 Score=36.49 Aligned_cols=91 Identities=19% Similarity=0.172 Sum_probs=61.1
Q ss_pred CceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceE
Q 017296 265 NGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCN 344 (374)
Q Consensus 265 ~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~ 344 (374)
+.|+.||.|..||+|+=+. +..++.. ...+.+++-...+ .++-+-.+|+|.+|+- .+++...+. +..+.
T Consensus 16 ~eLlvGs~D~~IRvf~~~e------~~~Ei~e-~~~v~~L~~~~~~-~F~Y~l~NGTVGvY~~--~~RlWRiKS-K~~~~ 84 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGDE------IVAEITE-TDKVTSLCSLGGG-RFAYALANGTVGVYDR--SQRLWRIKS-KNQVT 84 (111)
T ss_pred ceEEEecCCcEEEEEeCCc------EEEEEec-ccceEEEEEcCCC-EEEEEecCCEEEEEeC--cceeeeecc-CCCeE
Confidence 4579999999999996431 2233332 3457777766664 5777899999999975 455666653 33466
Q ss_pred EEEEeC---CCC-EEEEEeCCCcEEE
Q 017296 345 AVSFSS---DCK-LMASASEDSTVAL 366 (374)
Q Consensus 345 ~v~~sp---~~~-~las~s~D~~v~~ 366 (374)
++++.. ||. .|++|-.+|.|-+
T Consensus 85 ~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 85 SMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred EEEEEcCCCCCceEEEEEecCCeEEe
Confidence 665443 333 7899988887753
No 329
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.026 Score=53.45 Aligned_cols=91 Identities=13% Similarity=0.147 Sum_probs=60.1
Q ss_pred eEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeE-EEEECCCCCEEEEEeCCCeEEEEEccCCeEE
Q 017296 255 VLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGIS-GTSIRPDSKIAATAGWDRRVRIYNYRKGSAL 333 (374)
Q Consensus 255 v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~-~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~ 333 (374)
+..+.++|....+|.+-.+|.+.+..++ .+..+ .+..+...++ +++|.|||+++|.|-.||+|++-|+.++..+
T Consensus 23 i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlw----tip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 23 IKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLW----TIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred eEEEEEcCccchhheeccCCcEEEEEec-cceeE----eccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 3444555655666777777766665543 11111 1122223344 9999999999999999999999999998877
Q ss_pred EEe-cccCCceEEEEEeC
Q 017296 334 AIL-KYHHATCNAVSFSS 350 (374)
Q Consensus 334 ~~~-~~h~~~v~~v~~sp 350 (374)
... ..-...|.++-|.|
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 552 23456777777853
No 330
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.0078 Score=53.70 Aligned_cols=84 Identities=19% Similarity=0.235 Sum_probs=67.8
Q ss_pred CCeEEeecCCCceeEEEEeCCCC-EEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCe
Q 017296 9 DPVAVLRGHRASVTDVCFHQTKP-ILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGT 87 (374)
Q Consensus 9 ~~~~~l~gH~~~V~~l~~~~~~~-~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~ 87 (374)
++...+.+|...|+.|+|+|..+ +|..++.+.+|+|-|+++.-++..+..|. .+-+++|+.. +.+.+..|-..|.
T Consensus 184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~---~~wSC~wDld-e~h~IYaGl~nG~ 259 (463)
T KOG1645|consen 184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYN---QIWSCCWDLD-ERHVIYAGLQNGM 259 (463)
T ss_pred chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccC---CceeeeeccC-CcceeEEeccCce
Confidence 45667889999999999999776 89999999999999999876666655552 3567777764 3467778889999
Q ss_pred EEEEecCCC
Q 017296 88 VKCWDIENG 96 (374)
Q Consensus 88 vrvwd~~~~ 96 (374)
|-++|++..
T Consensus 260 VlvyD~R~~ 268 (463)
T KOG1645|consen 260 VLVYDMRQP 268 (463)
T ss_pred EEEEEccCC
Confidence 999999865
No 331
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.22 E-value=0.79 Score=40.47 Aligned_cols=193 Identities=19% Similarity=0.246 Sum_probs=106.9
Q ss_pred ceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEE-----EecCCcEEEE
Q 017296 162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLA-----GYEDGSILVW 236 (374)
Q Consensus 162 ~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----gs~dg~i~iw 236 (374)
..++++-.--....+||..+++....+.... ++.+. ....|.+ ++. +|++ ....|.|-+|
T Consensus 18 ~avafaRRPG~~~~v~D~~~g~~~~~~~a~~----------gRHFy-GHg~fs~---dG~-~LytTEnd~~~g~G~IgVy 82 (305)
T PF07433_consen 18 EAVAFARRPGTFALVFDCRTGQLLQRLWAPP----------GRHFY-GHGVFSP---DGR-LLYTTENDYETGRGVIGVY 82 (305)
T ss_pred eEEEEEeCCCcEEEEEEcCCCceeeEEcCCC----------CCEEe-cCEEEcC---CCC-EEEEeccccCCCcEEEEEE
Confidence 3344444444568899999998776664321 11110 1112322 232 2333 2335889999
Q ss_pred eccCCCCceeeeecCccCeEEEEEecCCCceEEE--ec-----CCeEEEEEcCCCC----------CeEEEEEee--ecC
Q 017296 237 DIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISG--GA-----DQKIVLYNLDHST----------GSCVIKKEI--NLE 297 (374)
Q Consensus 237 dl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~--s~-----D~~i~lwd~~~~~----------~~~~~~~~~--~~~ 297 (374)
|.+..-..+..+..|.-.-..+.+.+++..|+.+ +- .|..+| |++..+ +...-+.++ ..+
T Consensus 83 d~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kL-Nl~tM~psL~~ld~~sG~ll~q~~Lp~~~~ 161 (305)
T PF07433_consen 83 DAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKL-NLDTMQPSLVYLDARSGALLEQVELPPDLH 161 (305)
T ss_pred ECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceec-ChhhcCCceEEEecCCCceeeeeecCcccc
Confidence 9974323344455555445556677777555433 21 234444 233322 222222223 335
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCe-------EEEEEccCCeEEEEecc-------cCCceEEEEEeCCCCEE-EEEeCCC
Q 017296 298 RPGISGTSIRPDSKIAATAGWDRR-------VRIYNYRKGSALAILKY-------HHATCNAVSFSSDCKLM-ASASEDS 362 (374)
Q Consensus 298 ~~~v~~~~~sp~~~~l~s~~~dg~-------v~iwd~~~~~~~~~~~~-------h~~~v~~v~~sp~~~~l-as~s~D~ 362 (374)
+-.++-+++.++|..+...-+.|. |-+++ .++.+..+.. -.+.+-+|++++++.++ +|+-.-+
T Consensus 162 ~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg 239 (305)
T PF07433_consen 162 QLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGG 239 (305)
T ss_pred ccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCC
Confidence 556888999999877665555543 33332 2333333322 23679999999999866 6777889
Q ss_pred cEEEecCCCC
Q 017296 363 TVALWELYPP 372 (374)
Q Consensus 363 ~v~~W~~~~~ 372 (374)
.+-+||...+
T Consensus 240 ~~~~~d~~tg 249 (305)
T PF07433_consen 240 RVAVWDAATG 249 (305)
T ss_pred EEEEEECCCC
Confidence 9999987654
No 332
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.83 E-value=1.3 Score=39.71 Aligned_cols=181 Identities=14% Similarity=0.166 Sum_probs=103.3
Q ss_pred CCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceeeeec
Q 017296 171 LSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTAMKV 250 (374)
Q Consensus 171 d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~ 250 (374)
-..|.|-|++.++.+..+.-+. |..+. |..+. .+.+-+.||++....+...++..+....
T Consensus 117 a~SVtVVDl~~~kvv~ei~~PG--------------C~~iy---P~~~~---~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~ 176 (342)
T PF06433_consen 117 ATSVTVVDLAAKKVVGEIDTPG--------------CWLIY---PSGNR---GFSMLCGDGSLLTVTLDADGKEAQKSTK 176 (342)
T ss_dssp SEEEEEEETTTTEEEEEEEGTS--------------EEEEE---EEETT---EEEEEETTSCEEEEEETSTSSEEEEEEE
T ss_pred CCeEEEEECCCCceeeeecCCC--------------EEEEE---ecCCC---ceEEEecCCceEEEEECCCCCEeEeecc
Confidence 3468888888888776665321 22221 22112 4778899999999999765554322111
Q ss_pred ----CccCeEEE-EEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeee--c---C--C-CCeEEEEECCCCC-EEEEE
Q 017296 251 ----HLEPVLCL-SIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEIN--L---E--R-PGISGTSIRPDSK-IAATA 316 (374)
Q Consensus 251 ----h~~~v~~~-~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~--~---~--~-~~v~~~~~sp~~~-~l~s~ 316 (374)
..+++..- .+......++--+..|.|.--|+...........++- . . + .+-.-+++++..+ +.+..
T Consensus 177 ~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLM 256 (342)
T PF06433_consen 177 VFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLM 256 (342)
T ss_dssp ESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEE
T ss_pred ccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEe
Confidence 11222211 1233333456677888888888765442222111110 0 0 0 1223477876544 33322
Q ss_pred e--CCC-------eEEEEEccCCeEEEEecccCCceEEEEEeCCCC-EEEEE-eCCCcEEEecCCCC
Q 017296 317 G--WDR-------RVRIYNYRKGSALAILKYHHATCNAVSFSSDCK-LMASA-SEDSTVALWELYPP 372 (374)
Q Consensus 317 ~--~dg-------~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~-~las~-s~D~~v~~W~~~~~ 372 (374)
. .++ .|.++|+.+++++..+.- +..+.+|+.+.|.+ +|... ..++.+.+||...+
T Consensus 257 h~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG 322 (342)
T PF06433_consen 257 HQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG 322 (342)
T ss_dssp EE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT-
T ss_pred cCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC
Confidence 2 111 588889999999988863 34578999999877 66554 46899999998654
No 333
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.82 E-value=0.14 Score=46.67 Aligned_cols=148 Identities=11% Similarity=-0.023 Sum_probs=90.8
Q ss_pred EEEEEec-CCcEEEEeccCCCCc-eeeeecCccCeEEEEEecCCCceEE--EecCCeEEEEEcCCCCCeEEEEEeeecCC
Q 017296 223 NVLAGYE-DGSILVWDIRNPGIP-LTAMKVHLEPVLCLSIDESCNGGIS--GGADQKIVLYNLDHSTGSCVIKKEINLER 298 (374)
Q Consensus 223 ~~~~gs~-dg~i~iwdl~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~s--~s~D~~i~lwd~~~~~~~~~~~~~~~~~~ 298 (374)
.+.+.+. |..+|+||+++.... ...+..-...+..+.-.++...+++ .-.++.|.++|-....+. .....+.|.
T Consensus 67 L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q--~~~fkklH~ 144 (558)
T KOG0882|consen 67 LFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQ--DGYFKKLHF 144 (558)
T ss_pred eEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCc--cceeccccc
Confidence 3556566 999999999764322 1111111122222211122222222 234678888875432211 112234466
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEEccC------CeE---------EEEecccCCceEEEEEeCCCCEEEEEeCCCc
Q 017296 299 PGISGTSIRPDSKIAATAGWDRRVRIYNYRK------GSA---------LAILKYHHATCNAVSFSSDCKLMASASEDST 363 (374)
Q Consensus 299 ~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~------~~~---------~~~~~~h~~~v~~v~~sp~~~~las~s~D~~ 363 (374)
.+|..+.+.|-+..++|....|-|.-|.... .+. +..+........++.|+|+|..+++-+.|..
T Consensus 145 sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~Drk 224 (558)
T KOG0882|consen 145 SPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRK 224 (558)
T ss_pred CceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccE
Confidence 7788999999888899998889999998762 111 1122223456788999999999999999999
Q ss_pred EEEecCCCC
Q 017296 364 VALWELYPP 372 (374)
Q Consensus 364 v~~W~~~~~ 372 (374)
||++.+..+
T Consensus 225 VR~F~~KtG 233 (558)
T KOG0882|consen 225 VRGFVFKTG 233 (558)
T ss_pred EEEEEeccc
Confidence 999876543
No 334
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.73 E-value=0.24 Score=46.36 Aligned_cols=138 Identities=14% Similarity=0.163 Sum_probs=80.6
Q ss_pred EEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEE--ecCCCce-----EEEecCCeEEEEEcCCCCCeEE-EEEeee
Q 017296 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSI--DESCNGG-----ISGGADQKIVLYNLDHSTGSCV-IKKEIN 295 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~--~~~~~~~-----~s~s~D~~i~lwd~~~~~~~~~-~~~~~~ 295 (374)
+.++.....|.-.|++. +..+..-+.|.+ |.-+.+ +.+..++ +.|-.|+.|.-||.+-.....+ .....+
T Consensus 349 l~~~~~~~~l~klDIE~-GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIER-GKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred eeCCCCcCcceeeeccc-ceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 33455556666677764 444555555555 333333 3233222 4566789999999864322111 111111
Q ss_pred cCC-CCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEE-ecccCCceEEEEEeCCCCEEEEEeCCCcEEE
Q 017296 296 LER-PGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAI-LKYHHATCNAVSFSSDCKLMASASEDSTVAL 366 (374)
Q Consensus 296 ~~~-~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~-~~~h~~~v~~v~~sp~~~~las~s~D~~v~~ 366 (374)
+.+ ....|.+-..+| +||.|+.+|.||+||. .++..++ +++-..+|..|..+.||++|+... +.++-+
T Consensus 427 y~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlL 496 (644)
T KOG2395|consen 427 YSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLL 496 (644)
T ss_pred cccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEE
Confidence 110 123344444455 7888999999999998 5665554 566678999999999999766444 344433
No 335
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=95.64 E-value=0.0041 Score=58.68 Aligned_cols=144 Identities=15% Similarity=0.220 Sum_probs=90.1
Q ss_pred EEEEecCCcEEEEeccCCCCc-eeeeecCccCeEEEEEecCCC-ceEEEe----cCCeEEEEEcCCCCCeEEEEEeee-c
Q 017296 224 VLAGYEDGSILVWDIRNPGIP-LTAMKVHLEPVLCLSIDESCN-GGISGG----ADQKIVLYNLDHSTGSCVIKKEIN-L 296 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~-~~~~~~h~~~v~~~~~~~~~~-~~~s~s----~D~~i~lwd~~~~~~~~~~~~~~~-~ 296 (374)
++.|..+|.|-+-.++.+... .....+|..+.++++|.+-.. .+|.|- .|-.+++||+...--.......+. .
T Consensus 73 lavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~ 152 (783)
T KOG1008|consen 73 LAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSS 152 (783)
T ss_pred hhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccc
Confidence 566888899998888754321 222346788999999965422 334332 367899999975300000001111 1
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeC-CCCEEEEEeCCCcEEEecC
Q 017296 297 ERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSS-DCKLMASASEDSTVALWEL 369 (374)
Q Consensus 297 ~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp-~~~~las~s~D~~v~~W~~ 369 (374)
...+..++++-.+.+++.+|...+.++++|++..- .....-.+..+..+...| .+.++++.+ |+.|.+||-
T Consensus 153 ~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~-~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~ 224 (783)
T KOG1008|consen 153 TLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL-DSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDT 224 (783)
T ss_pred cccCccccccccCcchhhcccccchhhhhhhhhhh-hhhhhhhhhhcccceecCCCCCceeccc-cCceeeccc
Confidence 23456688888899999999999999999997321 111111223344455566 666888876 999999993
No 336
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.58 E-value=0.042 Score=33.70 Aligned_cols=34 Identities=18% Similarity=0.332 Sum_probs=29.9
Q ss_pred CCceeEEEEeCCCCEEEEecCCCcEEEEeCcccce
Q 017296 18 RASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRT 52 (374)
Q Consensus 18 ~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~ 52 (374)
...|.+++|+|...+|+.|..||.|.|+-+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 457999999999999999999999999998 5543
No 337
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=95.57 E-value=0.0048 Score=58.26 Aligned_cols=135 Identities=18% Similarity=0.326 Sum_probs=85.0
Q ss_pred CCcEEEEeccCCC-Cceee--eec-CccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEE
Q 017296 230 DGSILVWDIRNPG-IPLTA--MKV-HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTS 305 (374)
Q Consensus 230 dg~i~iwdl~~~~-~~~~~--~~~-h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~ 305 (374)
|-.++|||+...- .|... +.. ..+....+++..+...+++|.....++++|++....++.. + ....+..+.
T Consensus 128 ds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~s---v--nTk~vqG~t 202 (783)
T KOG1008|consen 128 DSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSS---V--NTKYVQGIT 202 (783)
T ss_pred cCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhh---h--hhhhcccce
Confidence 5789999996420 11111 222 3445667777777777889999999999998743222211 1 112356678
Q ss_pred ECC-CCCEEEEEeCCCeEEEEEc-cCC-eEEEEecccCC----ceEEEEEeCCCC-EEEEEeC-CCcEEEecCC
Q 017296 306 IRP-DSKIAATAGWDRRVRIYNY-RKG-SALAILKYHHA----TCNAVSFSSDCK-LMASASE-DSTVALWELY 370 (374)
Q Consensus 306 ~sp-~~~~l~s~~~dg~v~iwd~-~~~-~~~~~~~~h~~----~v~~v~~sp~~~-~las~s~-D~~v~~W~~~ 370 (374)
+.| .+.|+++-. ||-|.+||. ..- +++..+...++ .+..++|+|... .+++.+. .++|+++++.
T Consensus 203 Vdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 203 VDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred ecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 888 777887655 999999993 322 22333332333 489999999654 6666654 4678888763
No 338
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.55 E-value=0.048 Score=33.43 Aligned_cols=30 Identities=23% Similarity=0.430 Sum_probs=27.5
Q ss_pred CCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 340 HATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 340 ~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
.+.|..++|+|...+||.++.||.|.++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 357999999999999999999999999887
No 339
>PRK02888 nitrous-oxide reductase; Validated
Probab=95.45 E-value=2.8 Score=40.89 Aligned_cols=99 Identities=15% Similarity=0.084 Sum_probs=62.9
Q ss_pred CCcEEEEeccCC---CCceeeeecCccCeEEEEEecCCCceEE-EecCCeEEEEEcCCCCC----e----EEEEEeeecC
Q 017296 230 DGSILVWDIRNP---GIPLTAMKVHLEPVLCLSIDESCNGGIS-GGADQKIVLYNLDHSTG----S----CVIKKEINLE 297 (374)
Q Consensus 230 dg~i~iwdl~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~s-~s~D~~i~lwd~~~~~~----~----~~~~~~~~~~ 297 (374)
++.|.+.|.++. ...+.....-......+.++|++.+++. +..++++.+.|++.... + -....+...
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev- 373 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL- 373 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-
Confidence 467888887651 1112212123445667888999988765 45599999999865321 0 011122221
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEEccC
Q 017296 298 RPGISGTSIRPDSKIAATAGWDRRVRIYNYRK 329 (374)
Q Consensus 298 ~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~ 329 (374)
..+-.-.+|.++|....|--.|..|..||+.+
T Consensus 374 GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 374 GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 12345678999998888888899999999976
No 340
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=95.43 E-value=1.2 Score=41.97 Aligned_cols=160 Identities=18% Similarity=0.206 Sum_probs=77.9
Q ss_pred CeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEE--EeccCCCCceeeee
Q 017296 172 SEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILV--WDIRNPGIPLTAMK 249 (374)
Q Consensus 172 ~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~i--wdl~~~~~~~~~~~ 249 (374)
..+.++|+.+++....+........+.+++. +...+++...||...| +|+... .+..+.
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspD-----------------G~~l~f~~~rdg~~~iy~~dl~~~--~~~~Lt 278 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPD-----------------GSKLAFSSSRDGSPDIYLMDLDGK--NLPRLT 278 (425)
T ss_pred ceEEEEeccCCccceeeccCCccCCccCCCC-----------------CCEEEEEECCCCCccEEEEcCCCC--cceecc
Confidence 4688999998875443332222222333332 3334556666666555 455432 222232
Q ss_pred cCccCeE-EEEEecCCCceEEEe-cCCeEEEE--EcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeC-CCe--E
Q 017296 250 VHLEPVL-CLSIDESCNGGISGG-ADQKIVLY--NLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGW-DRR--V 322 (374)
Q Consensus 250 ~h~~~v~-~~~~~~~~~~~~s~s-~D~~i~lw--d~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~-dg~--v 322 (374)
+...+. .=.++|++..++-.| ..|.-.+| |++..+. .+... ....-..-.+||||++|+..+. +|. |
T Consensus 279 -~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~---~riT~--~~~~~~~p~~SpdG~~i~~~~~~~g~~~i 352 (425)
T COG0823 279 -NGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV---TRLTF--SGGGNSNPVWSPDGDKIVFESSSGGQWDI 352 (425)
T ss_pred -cCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce---eEeec--cCCCCcCccCCCCCCEEEEEeccCCceee
Confidence 222222 334578888776544 44544444 4443322 11111 1111224578999999886664 344 5
Q ss_pred EEEEccCCeEEEEecccCCceEEEEEeCCCCEEEE
Q 017296 323 RIYNYRKGSALAILKYHHATCNAVSFSSDCKLMAS 357 (374)
Q Consensus 323 ~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las 357 (374)
.+.|+.++.....+. +......-.|.|+|+.+..
T Consensus 353 ~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~ 386 (425)
T COG0823 353 DKNDLASGGKIRILT-STYLNESPSWAPNGRMIMF 386 (425)
T ss_pred EEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEE
Confidence 556665554333332 2222333355666665443
No 341
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.42 E-value=0.061 Score=54.18 Aligned_cols=98 Identities=13% Similarity=0.274 Sum_probs=67.7
Q ss_pred eEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEE-
Q 017296 267 GISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNA- 345 (374)
Q Consensus 267 ~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~- 345 (374)
++.|+.-|.+-+.|+...-+ +... -.....+|++++|+.+|+.++.|-.+|-|.+||...++.++.+..|..++..
T Consensus 102 ivi~Ts~ghvl~~d~~~nL~-~~~~--ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v 178 (1206)
T KOG2079|consen 102 IVIGTSHGHVLLSDMTGNLG-PLHQ--NERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV 178 (1206)
T ss_pred EEEEcCchhhhhhhhhcccc-hhhc--CCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence 45666677777776643100 0001 1122467999999999999999999999999999999998888766655444
Q ss_pred --EEEeCCCCEEEEEeCCCcEEEecC
Q 017296 346 --VSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 346 --v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
+.+..++..+.++..-|. +|++
T Consensus 179 i~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 179 IFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEeCCCcEEEEccCCCc--eEEE
Confidence 444456667777766664 6765
No 342
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.29 E-value=0.06 Score=44.75 Aligned_cols=103 Identities=16% Similarity=0.165 Sum_probs=56.9
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEe-cCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCC-CC
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSID-ESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLER-PG 300 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~-~~ 300 (374)
.++.|+.+|.|.+|.....+........-.++|.++-.. .+.....+++.||.|+.|++....... ....|. ..
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g----~~g~h~~~~ 147 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLG----YVGQHNFES 147 (238)
T ss_pred eEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceee----eeccccCCC
Confidence 478899999999998753222111112223445444332 233356789999999999986432111 112222 12
Q ss_pred eEEEEECCCCCEEEEE--eCCCeEEEEEccC
Q 017296 301 ISGTSIRPDSKIAATA--GWDRRVRIYNYRK 329 (374)
Q Consensus 301 v~~~~~sp~~~~l~s~--~~dg~v~iwd~~~ 329 (374)
......+..++.++++ +.|..++.|++..
T Consensus 148 ~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 148 GEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cceeEEecCCceEEeeccccchhhhhcchhh
Confidence 2223333344455555 6677777777754
No 343
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.29 E-value=0.011 Score=58.12 Aligned_cols=137 Identities=15% Similarity=0.218 Sum_probs=90.7
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEec--CCeEEEEEcCCCCCeEEEEEeeecCCCC
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA--DQKIVLYNLDHSTGSCVIKKEINLERPG 300 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~--D~~i~lwd~~~~~~~~~~~~~~~~~~~~ 300 (374)
.++.|+-.|.|++|+..+ +.......+|..+|+.+.-+.++...++.+. .--..||++.. ++. ....-..
T Consensus 1115 hL~vG~~~Geik~~nv~s-G~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s-~~~------~~Hsf~e 1186 (1516)
T KOG1832|consen 1115 HLAVGSHAGEIKIFNVSS-GSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASS-TGG------PRHSFDE 1186 (1516)
T ss_pred eEEeeeccceEEEEEccC-ccccccccccccccccccccCCcceeeeeccccCchHHHhcccc-ccC------ccccccc
Confidence 688899999999999976 4445567789999999988666655554443 23577898853 211 1111123
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEeccc----CCceEEEEEeCCCCEEEEEeCCCcEEEecCCCC
Q 017296 301 ISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYH----HATCNAVSFSSDCKLMASASEDSTVALWELYPP 372 (374)
Q Consensus 301 v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h----~~~v~~v~~sp~~~~las~s~D~~v~~W~~~~~ 372 (374)
-.++.|+...+.-+.|+.-..+.+||++++..+.++-.. .-.-+.+.|+|+..++.- ||. +||...|
T Consensus 1187 d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln---dGv--LWDvR~~ 1257 (1516)
T KOG1832|consen 1187 DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN---DGV--LWDVRIP 1257 (1516)
T ss_pred cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee---Cce--eeeeccH
Confidence 456788876555555666678899999999877663221 112256779998887763 553 5877544
No 344
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.17 E-value=0.13 Score=49.43 Aligned_cols=107 Identities=7% Similarity=0.037 Sum_probs=72.0
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCe-EE-EEEeeecCCCC
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGS-CV-IKKEINLERPG 300 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~-~~-~~~~~~~~~~~ 300 (374)
.++.|+.-|.+.+|+-...........+-...+....+++.....|.|++.|.|.++-++..... .. ....-+.|...
T Consensus 47 ~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~r 126 (726)
T KOG3621|consen 47 YLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCR 126 (726)
T ss_pred eEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCce
Confidence 57889999999999864322222223233334444555666666788888999999877642211 11 11112235567
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEccC
Q 017296 301 ISGTSIRPDSKIAATAGWDRRVRIYNYRK 329 (374)
Q Consensus 301 v~~~~~sp~~~~l~s~~~dg~v~iwd~~~ 329 (374)
|++++|++|+..+.+|...|+|..-.+..
T Consensus 127 VTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 127 VTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred EEEEEecccccEEeecCCCceEEEEEech
Confidence 99999999999999999999998876654
No 345
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.03 E-value=2 Score=36.77 Aligned_cols=84 Identities=13% Similarity=0.114 Sum_probs=53.1
Q ss_pred CeEEeecCCCceeEEEEeC-------------------CCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEecc
Q 017296 10 PVAVLRGHRASVTDVCFHQ-------------------TKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVAT 70 (374)
Q Consensus 10 ~~~~l~gH~~~V~~l~~~~-------------------~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~ 70 (374)
.....-.|...+.++.+-. -|++++-|...|.+++-+..+|...-.+..-. ...+.+..
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~-~vk~~a~~- 101 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE-TVKVRAQC- 101 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeehh-hhccceEE-
Confidence 4444556877777665421 15567788888889988888886554443221 12222222
Q ss_pred CCccccceeeeccccCeEEEEecCCCC
Q 017296 71 GPSIGLNKVISQGRDGTVKCWDIENGG 97 (374)
Q Consensus 71 ~~~~~~~~l~s~~~D~~vrvwd~~~~~ 97 (374)
.+++..+..|+.|+.+..-|+.+..
T Consensus 102 --d~~~glIycgshd~~~yalD~~~~~ 126 (354)
T KOG4649|consen 102 --DFDGGLIYCGSHDGNFYALDPKTYG 126 (354)
T ss_pred --cCCCceEEEecCCCcEEEecccccc
Confidence 2244677899999999999987643
No 346
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=94.62 E-value=3.8 Score=38.11 Aligned_cols=191 Identities=15% Similarity=0.128 Sum_probs=91.4
Q ss_pred EEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccC-CC
Q 017296 164 MAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRN-PG 242 (374)
Q Consensus 164 ~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~-~~ 242 (374)
+++.|..++.+.|-|+|....+....-.........+.....+.+.+..+ .........++.|++.|.+.+|.+-- ..
T Consensus 99 Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~-~~D~ySSi~L~vGTn~G~v~~fkIlp~~~ 177 (395)
T PF08596_consen 99 FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTL-GGDGYSSICLLVGTNSGNVLTFKILPSSN 177 (395)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE--TTSSSEEEEEEEEETTSEEEEEEEEE-GG
T ss_pred EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEec-CCCcccceEEEEEeCCCCEEEEEEecCCC
Confidence 45667788999999998877655432111000000000001122222222 11111234678899999999998841 11
Q ss_pred Ccee----ee-ecCccCeEEEEE-ecC-C-------------------CceEEEecCCeEEEEEcCCCCCeEEEEEeeec
Q 017296 243 IPLT----AM-KVHLEPVLCLSI-DES-C-------------------NGGISGGADQKIVLYNLDHSTGSCVIKKEINL 296 (374)
Q Consensus 243 ~~~~----~~-~~h~~~v~~~~~-~~~-~-------------------~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~ 296 (374)
.... .. ..+.++|..+.. +.+ + ..++....+..||++......+.+ +..+.
T Consensus 178 g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~---K~~~~ 254 (395)
T PF08596_consen 178 GRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAH---KSFDD 254 (395)
T ss_dssp G-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEE---EE-SS
T ss_pred CceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccc---eeecc
Confidence 1111 11 235566666653 221 1 124555667889998775432211 11111
Q ss_pred CCCCeEEEEE-----CCCCCEEEEEeCCCeEEEEEccCCeEEEEecccC----CceEEEEEeCCCCEEEEEe
Q 017296 297 ERPGISGTSI-----RPDSKIAATAGWDRRVRIYNYRKGSALAILKYHH----ATCNAVSFSSDCKLMASAS 359 (374)
Q Consensus 297 ~~~~v~~~~~-----sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~----~~v~~v~~sp~~~~las~s 359 (374)
...+.++++ ...+..|++-..+|.|+++.+-.-+.+..++-+. ..+....++++|+.+.-.|
T Consensus 255 -~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~g 325 (395)
T PF08596_consen 255 -PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTG 325 (395)
T ss_dssp --EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-S
T ss_pred -ccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEEEEeC
Confidence 112334455 2356678888899999999998777776655432 2344567788998776554
No 347
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.56 E-value=0.16 Score=51.31 Aligned_cols=102 Identities=15% Similarity=0.187 Sum_probs=66.0
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeE
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGIS 302 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~ 302 (374)
.++.|++-|.|-.+|++.+-.++..-..-+.+|++++|+.++..++.|=.+|.|.+||+........+. +......++-
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~-e~~ap~t~vi 179 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVIT-EHGAPVTGVI 179 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeee-ecCCccceEE
Confidence 377889999999999865322322233346799999999999988999999999999997543222221 1111222333
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEc
Q 017296 303 GTSIRPDSKIAATAGWDRRVRIYNY 327 (374)
Q Consensus 303 ~~~~sp~~~~l~s~~~dg~v~iwd~ 327 (374)
-+-+..++..++++..-|. +|.+
T Consensus 180 ~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 180 FVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEeCCCcEEEEccCCCc--eEEE
Confidence 3334445556777766665 5654
No 348
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.47 E-value=1.1 Score=46.19 Aligned_cols=141 Identities=16% Similarity=0.123 Sum_probs=84.8
Q ss_pred EEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcC--CCC-----------CeEEE
Q 017296 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD--HST-----------GSCVI 290 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~--~~~-----------~~~~~ 290 (374)
++.+..+|.|.+-|..+. .+.....-...|.+++++|++..++....++++.+=+-+ .-. .++..
T Consensus 83 i~v~~~~G~iilvd~et~--~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~ 160 (1265)
T KOG1920|consen 83 ICVITALGDIILVDPETL--ELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVN 160 (1265)
T ss_pred EEEEecCCcEEEEccccc--ceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccce
Confidence 666778889999887643 222222235689999999999888888887777763321 000 00000
Q ss_pred E----E--eee------------c---------CCCCeEEEEECCCCCEEEEEe----CC-CeEEEEEccCCeEEEEecc
Q 017296 291 K----K--EIN------------L---------ERPGISGTSIRPDSKIAATAG----WD-RRVRIYNYRKGSALAILKY 338 (374)
Q Consensus 291 ~----~--~~~------------~---------~~~~v~~~~~sp~~~~l~s~~----~d-g~v~iwd~~~~~~~~~~~~ 338 (374)
. . .+. . ..+.-.+++|.-||+++|... .+ ++|++||.+ |..-.+-..
T Consensus 161 VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~ 239 (1265)
T KOG1920|consen 161 VGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEP 239 (1265)
T ss_pred ecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCc
Confidence 0 0 000 0 011224589999999988732 34 899999986 432211111
Q ss_pred cCCceEEEEEeCCCCEEEEE---eCCCcEEEe
Q 017296 339 HHATCNAVSFSSDCKLMASA---SEDSTVALW 367 (374)
Q Consensus 339 h~~~v~~v~~sp~~~~las~---s~D~~v~~W 367 (374)
-.+.=.+++|-|.|.++|+- +.|+.|.++
T Consensus 240 ~~~l~~~LsWkPsgs~iA~iq~~~sd~~Ivff 271 (1265)
T KOG1920|consen 240 VEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFF 271 (1265)
T ss_pred ccccccceeecCCCCeEeeeeecCCCCcEEEE
Confidence 22334678999999999974 345567665
No 349
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=94.46 E-value=1.4 Score=32.48 Aligned_cols=94 Identities=13% Similarity=0.083 Sum_probs=57.9
Q ss_pred CCceEEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCC
Q 017296 219 QGFVNVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLER 298 (374)
Q Consensus 219 ~~~~~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~ 298 (374)
++...|++||+|..||+|+=. ..+..++ .++.|.++.-... ..++.+-..|+|-+|+-. ...+. .+..
T Consensus 13 dg~~eLlvGs~D~~IRvf~~~---e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWR----iKSK- 80 (111)
T PF14783_consen 13 DGENELLVGSDDFEIRVFKGD---EIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWR----IKSK- 80 (111)
T ss_pred CCcceEEEecCCcEEEEEeCC---cEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeee----eccC-
Confidence 344579999999999999743 2344343 4566777766544 458889999999998642 11111 1222
Q ss_pred CCeEEEEE-CCC--C-CEEEEEeCCCeEEE
Q 017296 299 PGISGTSI-RPD--S-KIAATAGWDRRVRI 324 (374)
Q Consensus 299 ~~v~~~~~-sp~--~-~~l~s~~~dg~v~i 324 (374)
..+.++.+ ..+ | +-|++|-.+|.|-+
T Consensus 81 ~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 81 NQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred CCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 22455443 333 2 24778888888753
No 350
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.44 E-value=0.99 Score=42.60 Aligned_cols=56 Identities=16% Similarity=0.331 Sum_probs=37.3
Q ss_pred CCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 310 SKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 310 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
|.+|...+.+ .|.+||+.+++.+..+... .|..|.|+++|+++|-.+.| ++.+.+.
T Consensus 117 G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~ 172 (443)
T PF04053_consen 117 GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKY 172 (443)
T ss_dssp SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEe
Confidence 7777766544 8999999999999888633 48999999999999988866 5656543
No 351
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=94.38 E-value=5.1 Score=38.58 Aligned_cols=68 Identities=18% Similarity=0.062 Sum_probs=40.3
Q ss_pred CCEEEEecCCCcEEEEeCcccceeeeeeeeec--eeeeEEeccCCcccc-ceeeeccccCeEEEEecCCCC
Q 017296 30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSA--AHGIVSVATGPSIGL-NKVISQGRDGTVKCWDIENGG 97 (374)
Q Consensus 30 ~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~l~s~~~D~~vrvwd~~~~~ 97 (374)
+..++.++.++.+.-.|..+|+.+=....... ......+.......+ .+++.++.|+.|.-+|.++|+
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~ 131 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGK 131 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCC
Confidence 45677788889999999998875432221110 000000110101112 567778889999999999985
No 352
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.15 E-value=1.9 Score=40.59 Aligned_cols=147 Identities=15% Similarity=0.163 Sum_probs=86.3
Q ss_pred ceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCC---CceEEEEEecCCcEEEEec
Q 017296 162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQ---GFVNVLAGYEDGSILVWDI 238 (374)
Q Consensus 162 ~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~gs~dg~i~iwdl 238 (374)
.+++..+.....++--|++.|+.+..-.-.- + ..|+ .+.++... ....-+.|-.|+.|.=||+
T Consensus 346 nlil~~~~~~~~l~klDIE~GKIVeEWk~~~---------d-i~mv----~~t~d~K~~Ql~~e~TlvGLs~n~vfriDp 411 (644)
T KOG2395|consen 346 NLILMDGGEQDKLYKLDIERGKIVEEWKFED---------D-INMV----DITPDFKFAQLTSEQTLVGLSDNSVFRIDP 411 (644)
T ss_pred ceEeeCCCCcCcceeeecccceeeeEeeccC---------C-ccee----eccCCcchhcccccccEEeecCCceEEecc
Confidence 4566677666778888999888654432110 0 0110 11111000 0012456888999999999
Q ss_pred cCCCC-ceeeeecCc----cCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEE
Q 017296 239 RNPGI-PLTAMKVHL----EPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIA 313 (374)
Q Consensus 239 ~~~~~-~~~~~~~h~----~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 313 (374)
|-.+. .+...++|. ....|.+-..+| +++.||.+|-|||||--....+ ..+..-...|..+..+-||++|
T Consensus 412 Rv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AK----TAlPgLG~~I~hVdvtadGKwi 486 (644)
T KOG2395|consen 412 RVQGKNKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAK----TALPGLGDAIKHVDVTADGKWI 486 (644)
T ss_pred cccCcceeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhh----hcccccCCceeeEEeeccCcEE
Confidence 86554 233333432 345666655565 5789999999999985211111 1122223568888999999999
Q ss_pred EEEeCCCeEEEEEcc
Q 017296 314 ATAGWDRRVRIYNYR 328 (374)
Q Consensus 314 ~s~~~dg~v~iwd~~ 328 (374)
+++| +.++.+-++.
T Consensus 487 l~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 487 LATC-KTYLLLIDTL 500 (644)
T ss_pred EEec-ccEEEEEEEe
Confidence 8766 6677776653
No 353
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=94.13 E-value=0.74 Score=45.68 Aligned_cols=69 Identities=19% Similarity=0.284 Sum_probs=54.6
Q ss_pred eeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeee-eeeeceeeeEEeccCCccccceeeeccccCeEEEEecC
Q 017296 21 VTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSS-WVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE 94 (374)
Q Consensus 21 V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~ 94 (374)
++++||+|..-+|++|=.-|.+-||+..+.+. ++. ..|. ..+..+-|++ +|+.++|+-.-|.|.+|...
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~-htv~~th~--a~i~~l~wS~--~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET-HTVVETHP--APIQGLDWSH--DGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCcee-eeeccCCC--CCceeEEecC--CCCeEEEcCCCceeEEEEee
Confidence 46799999999999999999999999876443 222 2233 4577788887 67899999999999999986
No 354
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=93.61 E-value=6.3 Score=36.87 Aligned_cols=148 Identities=14% Similarity=0.180 Sum_probs=83.9
Q ss_pred CceEEEEEecCCcEEEEeccCCCCc---eeeeecCccCeEEEEEec----CCCceEEEecCCeEEEEEcCCCCCe-----
Q 017296 220 GFVNVLAGYEDGSILVWDIRNPGIP---LTAMKVHLEPVLCLSIDE----SCNGGISGGADQKIVLYNLDHSTGS----- 287 (374)
Q Consensus 220 ~~~~~~~gs~dg~i~iwdl~~~~~~---~~~~~~h~~~v~~~~~~~----~~~~~~s~s~D~~i~lwd~~~~~~~----- 287 (374)
+...++.||..|.++||+....... +..-..-..||..+..-. .....+.-=.-..+.+|.+....+.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence 3456899999999999998543311 111122356887776621 1111222234556677776433222
Q ss_pred -EEE--EEeeecCCCCeEEEEECC----C-CCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEe
Q 017296 288 -CVI--KKEINLERPGISGTSIRP----D-SKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASAS 359 (374)
Q Consensus 288 -~~~--~~~~~~~~~~v~~~~~sp----~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s 359 (374)
..+ ..+...++ ...+++.-| . ..+|..-+.||.+.+|+-+..-....+.. .--..-+.|.|.-..+++++
T Consensus 116 ~~~L~~~yeh~l~~-~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~s 193 (418)
T PF14727_consen 116 QYQLELIYEHSLQR-TAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTAS 193 (418)
T ss_pred EEEEEEEEEEeccc-ceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEec
Confidence 222 22222221 233444433 2 24677889999999998754333333332 22333468888888888888
Q ss_pred CCCcEEEecC
Q 017296 360 EDSTVALWEL 369 (374)
Q Consensus 360 ~D~~v~~W~~ 369 (374)
.+..+.-++.
T Consensus 194 ss~~l~~Yky 203 (418)
T PF14727_consen 194 SSWTLECYKY 203 (418)
T ss_pred CceeEEEecH
Confidence 8888877754
No 355
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.56 E-value=0.029 Score=55.30 Aligned_cols=138 Identities=17% Similarity=0.183 Sum_probs=79.0
Q ss_pred CcEEEEeccCCCCceeeeecCccCeEEEEE-ecCCCceEEEecCCeEEEEEcCCCCCeEEEEEee---ecCCCC---eEE
Q 017296 231 GSILVWDIRNPGIPLTAMKVHLEPVLCLSI-DESCNGGISGGADQKIVLYNLDHSTGSCVIKKEI---NLERPG---ISG 303 (374)
Q Consensus 231 g~i~iwdl~~~~~~~~~~~~h~~~v~~~~~-~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~---~~~~~~---v~~ 303 (374)
+.|++-+....-.-...+++..+.+..+.| +.++..++ -.-|..-+|+++--+|......+. .-.... |..
T Consensus 111 ~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~w 188 (1283)
T KOG1916|consen 111 NGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSW 188 (1283)
T ss_pred hhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeee
Confidence 445655543210001235666777777777 33333222 233678889986544332111111 111112 333
Q ss_pred EEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEE-----------EEeCCCCEEEEEeCCCcEEEecCCC
Q 017296 304 TSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAV-----------SFSSDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 304 ~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v-----------~~sp~~~~las~s~D~~v~~W~~~~ 371 (374)
.-|-++.-++-.+-.+++|++.+..+... ..+++|...+..+ ..||||..+|.++.||.+++|.++.
T Consensus 189 cp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi 266 (1283)
T KOG1916|consen 189 CPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYI 266 (1283)
T ss_pred cccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeee
Confidence 34445677777788889999876654332 3345565444332 3789999999999999999998853
No 356
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=93.43 E-value=6.6 Score=36.57 Aligned_cols=130 Identities=12% Similarity=0.071 Sum_probs=67.5
Q ss_pred ccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEecCCcEEEEeccCCCCceee
Q 017296 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGYEDGSILVWDIRNPGIPLTA 247 (374)
Q Consensus 168 ~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~dg~i~iwdl~~~~~~~~~ 247 (374)
++.++.+...|+.+++.+-+.... .. .... + .. ..++.++.+|.|..+|.++.. .+=.
T Consensus 262 ~~~~g~l~ald~~tG~~~W~~~~~---------~~-~~~~--~-------~~--~~vy~~~~~g~l~ald~~tG~-~~W~ 319 (394)
T PRK11138 262 LAYNGNLVALDLRSGQIVWKREYG---------SV-NDFA--V-------DG--GRIYLVDQNDRVYALDTRGGV-ELWS 319 (394)
T ss_pred EEcCCeEEEEECCCCCEEEeecCC---------Cc-cCcE--E-------EC--CEEEEEcCCCeEEEEECCCCc-EEEc
Confidence 445688999999998765443210 00 0000 0 01 146677788999999886532 1110
Q ss_pred eec-CccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEE-EEECCCCCEEEEEeCCCeEEEE
Q 017296 248 MKV-HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISG-TSIRPDSKIAATAGWDRRVRIY 325 (374)
Q Consensus 248 ~~~-h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~-~~~sp~~~~l~s~~~dg~v~iw 325 (374)
... -........+. +..++.++.||.+...|.++ +....+.... ...+.+ -.+ .++ .|+.++.||.+..+
T Consensus 320 ~~~~~~~~~~sp~v~--~g~l~v~~~~G~l~~ld~~t--G~~~~~~~~~--~~~~~s~P~~-~~~-~l~v~t~~G~l~~~ 391 (394)
T PRK11138 320 QSDLLHRLLTAPVLY--NGYLVVGDSEGYLHWINRED--GRFVAQQKVD--SSGFLSEPVV-ADD-KLLIQARDGTVYAI 391 (394)
T ss_pred ccccCCCcccCCEEE--CCEEEEEeCCCEEEEEECCC--CCEEEEEEcC--CCcceeCCEE-ECC-EEEEEeCCceEEEE
Confidence 100 00111111121 23467888999999988754 4443333221 112221 112 133 56678889988776
Q ss_pred Ec
Q 017296 326 NY 327 (374)
Q Consensus 326 d~ 327 (374)
++
T Consensus 392 ~~ 393 (394)
T PRK11138 392 TR 393 (394)
T ss_pred eC
Confidence 53
No 357
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=93.25 E-value=6.1 Score=35.62 Aligned_cols=137 Identities=15% Similarity=0.203 Sum_probs=77.7
Q ss_pred EEEEecCCcEEEEeccCCCCceeeeecCcc--CeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCe
Q 017296 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLE--PVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGI 301 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v 301 (374)
++++ .++.|.+|++.... .+.....+.. .+.++... +..++.|.....+.++..+....+... .........+
T Consensus 101 lv~~-~g~~l~v~~l~~~~-~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~-va~d~~~~~v 175 (321)
T PF03178_consen 101 LVVA-VGNKLYVYDLDNSK-TLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLIL-VARDYQPRWV 175 (321)
T ss_dssp EEEE-ETTEEEEEEEETTS-SEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEE-EEEESS-BEE
T ss_pred EEEe-ecCEEEEEEccCcc-cchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEE-EEecCCCccE
Confidence 4444 46899999998654 2322222323 55555554 346788888888888866543222222 1222333457
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEccC-------Ce-EEEE-eccc-CCceEEE---EEeCC--CC------EEEEEeC
Q 017296 302 SGTSIRPDSKIAATAGWDRRVRIYNYRK-------GS-ALAI-LKYH-HATCNAV---SFSSD--CK------LMASASE 360 (374)
Q Consensus 302 ~~~~~sp~~~~l~s~~~dg~v~iwd~~~-------~~-~~~~-~~~h-~~~v~~v---~~sp~--~~------~las~s~ 360 (374)
.++.|-+++..++.+..+|.+.++.... +. .+.. ..-| ...|+++ .+.|. +. .++.++.
T Consensus 176 ~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~ 255 (321)
T PF03178_consen 176 TAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTV 255 (321)
T ss_dssp EEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEET
T ss_pred EEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEec
Confidence 7888876667899999999999997752 22 2322 2223 3567776 44452 22 3777888
Q ss_pred CCcEE
Q 017296 361 DSTVA 365 (374)
Q Consensus 361 D~~v~ 365 (374)
+|.|-
T Consensus 256 ~G~Ig 260 (321)
T PF03178_consen 256 DGSIG 260 (321)
T ss_dssp TS-EE
T ss_pred CCEEE
Confidence 99887
No 358
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=93.20 E-value=7.2 Score=36.32 Aligned_cols=146 Identities=14% Similarity=0.208 Sum_probs=77.5
Q ss_pred EEEEEecCCcEEEEeccCCCCcee-eeec------CccCeEEEEEe-----cCC---CceEEEecCCeEEEEEcCC-CCC
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLT-AMKV------HLEPVLCLSID-----ESC---NGGISGGADQKIVLYNLDH-STG 286 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~-~~~~------h~~~v~~~~~~-----~~~---~~~~s~s~D~~i~lwd~~~-~~~ 286 (374)
.++.|+++|.+.+.|+|.+..... .+.. ....++++.|. .++ ..++.|...|.+..|.+.. ..+
T Consensus 99 Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g 178 (395)
T PF08596_consen 99 FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNG 178 (395)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG
T ss_pred EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCC
Confidence 478899999999999986543222 1111 23467788772 222 3457788889999998853 223
Q ss_pred eEEEE--EeeecCCCCeEEEE-EC------------------C---CCCEEEEEeCCCeEEEEEccCCeEEEEecccCCc
Q 017296 287 SCVIK--KEINLERPGISGTS-IR------------------P---DSKIAATAGWDRRVRIYNYRKGSALAILKYHHAT 342 (374)
Q Consensus 287 ~~~~~--~~~~~~~~~v~~~~-~s------------------p---~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~ 342 (374)
.+... .....+...+..+. |. + ...+ +....+..+|++..-+.+...........
T Consensus 179 ~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~-vVvvSe~~irv~~~~~~k~~~K~~~~~~~ 257 (395)
T PF08596_consen 179 RFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGY-VVVVSESDIRVFKPPKSKGAHKSFDDPFL 257 (395)
T ss_dssp -EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EE-EEEE-SSEEEEE-TT---EEEEE-SS-EE
T ss_pred ceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcE-EEEEcccceEEEeCCCCcccceeeccccc
Confidence 33211 11112333333332 31 1 1123 44455889999988777665443323233
Q ss_pred eEEEEEe-----CCCCEEEEEeCCCcEEEecC
Q 017296 343 CNAVSFS-----SDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 343 v~~v~~s-----p~~~~las~s~D~~v~~W~~ 369 (374)
+..+.+- ..+..|+.--.||.|+++.+
T Consensus 258 ~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SL 289 (395)
T PF08596_consen 258 CSSASVVPTISRNGGYCLVCLFNNGSIRIYSL 289 (395)
T ss_dssp EEEEEEEEEE-EEEEEEEEEEETTSEEEEEET
T ss_pred cceEEEEeecccCCceEEEEEECCCcEEEEEC
Confidence 3444442 24567888889999999876
No 359
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=93.01 E-value=4.4 Score=36.25 Aligned_cols=71 Identities=18% Similarity=0.231 Sum_probs=45.8
Q ss_pred CeEEEEECCCCCEEEEEeC---------CCeEEEEEcc-CCeEEEEecccCCceEEEEEeCCCCEEEEE-eCCCcEEEec
Q 017296 300 GISGTSIRPDSKIAATAGW---------DRRVRIYNYR-KGSALAILKYHHATCNAVSFSSDCKLMASA-SEDSTVALWE 368 (374)
Q Consensus 300 ~v~~~~~sp~~~~l~s~~~---------dg~v~iwd~~-~~~~~~~~~~h~~~v~~v~~sp~~~~las~-s~D~~v~~W~ 368 (374)
..+...+.|+|.+.+.... -..=.+|-+. .+.....+..|-..-+.|+||||++.|..+ +..+.|.-++
T Consensus 112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~ 191 (307)
T COG3386 112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYD 191 (307)
T ss_pred CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEe
Confidence 4556788899988765444 1112344444 455555666666677899999999865544 5557776666
Q ss_pred CC
Q 017296 369 LY 370 (374)
Q Consensus 369 ~~ 370 (374)
+.
T Consensus 192 ~d 193 (307)
T COG3386 192 LD 193 (307)
T ss_pred cC
Confidence 64
No 360
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.91 E-value=14 Score=38.75 Aligned_cols=67 Identities=15% Similarity=0.106 Sum_probs=48.5
Q ss_pred CceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEE
Q 017296 19 ASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKC 90 (374)
Q Consensus 19 ~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrv 90 (374)
+.|.++.|..+.+-++.+..+|.|.+-|..+...- . ......+|.+.++++ |+..++-...++++-+
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-i--vg~vd~GI~aaswS~--Dee~l~liT~~~tll~ 135 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELE-I--VGNVDNGISAASWSP--DEELLALITGRQTLLF 135 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEccccccee-e--eeeccCceEEEeecC--CCcEEEEEeCCcEEEE
Confidence 68999999999988888888899999898765421 1 122345688888887 6677776666666644
No 361
>PRK13616 lipoprotein LpqB; Provisional
Probab=92.82 E-value=2.3 Score=41.82 Aligned_cols=108 Identities=13% Similarity=0.004 Sum_probs=58.7
Q ss_pred cCeEEEEEecCCCceEEEe------cCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCC-CeEEEE
Q 017296 253 EPVLCLSIDESCNGGISGG------ADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWD-RRVRIY 325 (374)
Q Consensus 253 ~~v~~~~~~~~~~~~~s~s------~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d-g~v~iw 325 (374)
..+...++++++..++..- .|..-.||=.+.......+ .. ......-.|+|||+.|+..... ..+++.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~l---t~--g~~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQV---LE--GHSLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceee---ec--CCCCCCceECCCCCceEEEecCcceEEEe
Confidence 4667788888887665433 3444455533321111111 11 1235667899998877766533 223333
Q ss_pred EccCCeEEEEe--c------ccCCceEEEEEeCCCCEEEEEeCCCcEEE
Q 017296 326 NYRKGSALAIL--K------YHHATCNAVSFSSDCKLMASASEDSTVAL 366 (374)
Q Consensus 326 d~~~~~~~~~~--~------~h~~~v~~v~~sp~~~~las~s~D~~v~~ 366 (374)
+......+..+ . ...+.|..++|||||+.||... ++.|.+
T Consensus 425 ~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 425 RDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred ccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence 22111122111 1 2345799999999999887655 455554
No 362
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=92.68 E-value=5.5 Score=35.64 Aligned_cols=110 Identities=19% Similarity=0.208 Sum_probs=70.0
Q ss_pred eecCccCeEEEEEecCCCceEEE-ecCCeEEEEEcCCCCCeE---EEEEeeecCCCCeEEEEECCCCCEEEEEeCCC-eE
Q 017296 248 MKVHLEPVLCLSIDESCNGGISG-GADQKIVLYNLDHSTGSC---VIKKEINLERPGISGTSIRPDSKIAATAGWDR-RV 322 (374)
Q Consensus 248 ~~~h~~~v~~~~~~~~~~~~~s~-s~D~~i~lwd~~~~~~~~---~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg-~v 322 (374)
+..+..--+.|+|+|++..++.+ +..+.|.-++++..++.. ........+....-.++..-+|.+-+++.++| .|
T Consensus 158 ~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v 237 (307)
T COG3386 158 LDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRV 237 (307)
T ss_pred ecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceE
Confidence 33344455678999999776654 445788888876321111 00111112223344677777888776777776 89
Q ss_pred EEEEccCCeEEEEecccCCceEEEEEe-CCCCEE-EEE
Q 017296 323 RIYNYRKGSALAILKYHHATCNAVSFS-SDCKLM-ASA 358 (374)
Q Consensus 323 ~iwd~~~~~~~~~~~~h~~~v~~v~~s-p~~~~l-as~ 358 (374)
.+|+.+ ++.+..+.-+...+.+++|- |+.+.| +|+
T Consensus 238 ~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 238 VRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 999987 89888888776788888985 555544 444
No 363
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=92.14 E-value=2.7 Score=39.57 Aligned_cols=124 Identities=15% Similarity=0.121 Sum_probs=65.1
Q ss_pred CcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceE-EEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCC
Q 017296 231 GSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGI-SGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPD 309 (374)
Q Consensus 231 g~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~-s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 309 (374)
..+.++|+....... .+. ....-..-.|+|++..++ +...||...+|=++..... . ..+......-..=.|+||
T Consensus 218 ~~i~~~~l~~g~~~~-i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~-~--~~Lt~~~gi~~~Ps~spd 292 (425)
T COG0823 218 PRIYYLDLNTGKRPV-ILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN-L--PRLTNGFGINTSPSWSPD 292 (425)
T ss_pred ceEEEEeccCCccce-eec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc-c--eecccCCccccCccCCCC
Confidence 458888887643222 111 122233345678777665 4455776666554433222 1 112111111124579999
Q ss_pred CCEEE-EEeCCCeEEEE--EccCCeEEEEecccCCceEEEEEeCCCCEEEEEeC
Q 017296 310 SKIAA-TAGWDRRVRIY--NYRKGSALAILKYHHATCNAVSFSSDCKLMASASE 360 (374)
Q Consensus 310 ~~~l~-s~~~dg~v~iw--d~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~ 360 (374)
|++|+ +.+..|.-.|| |.+.+. ...+.-....-..-.|+|||++|+..+.
T Consensus 293 G~~ivf~Sdr~G~p~I~~~~~~g~~-~~riT~~~~~~~~p~~SpdG~~i~~~~~ 345 (425)
T COG0823 293 GSKIVFTSDRGGRPQIYLYDLEGSQ-VTRLTFSGGGNSNPVWSPDGDKIVFESS 345 (425)
T ss_pred CCEEEEEeCCCCCcceEEECCCCCc-eeEeeccCCCCcCccCCCCCCEEEEEec
Confidence 99887 44455665555 443333 2223222222226689999999887764
No 364
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.88 E-value=1.1 Score=26.76 Aligned_cols=30 Identities=23% Similarity=0.327 Sum_probs=24.9
Q ss_pred CeEEEEECCCCC---EEEEEeCCCeEEEEEccC
Q 017296 300 GISGTSIRPDSK---IAATAGWDRRVRIYNYRK 329 (374)
Q Consensus 300 ~v~~~~~sp~~~---~l~s~~~dg~v~iwd~~~ 329 (374)
.++++.|||++. +|+-+-.-+.|.|+|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 478899998655 788887789999999984
No 365
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=91.28 E-value=2.1 Score=40.21 Aligned_cols=69 Identities=26% Similarity=0.293 Sum_probs=45.8
Q ss_pred EEEEECCCCCEEEEE-eCCC----eEEEEEccCCeEEEE-ecccCCceEEEEEeCCCCEEEEEeCCC-----------cE
Q 017296 302 SGTSIRPDSKIAATA-GWDR----RVRIYNYRKGSALAI-LKYHHATCNAVSFSSDCKLMASASEDS-----------TV 364 (374)
Q Consensus 302 ~~~~~sp~~~~l~s~-~~dg----~v~iwd~~~~~~~~~-~~~h~~~v~~v~~sp~~~~las~s~D~-----------~v 364 (374)
...++|||++++|-+ +..| +++++|+.+++.+.. +.. ... ..+.|.+|++.|+....|. .|
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~-~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKF-SSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EES-EEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-ccc-ceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 357899999988733 3333 599999999987653 222 111 2389999999777665443 37
Q ss_pred EEecCCCC
Q 017296 365 ALWELYPP 372 (374)
Q Consensus 365 ~~W~~~~~ 372 (374)
++|.+..+
T Consensus 205 ~~~~~gt~ 212 (414)
T PF02897_consen 205 YRHKLGTP 212 (414)
T ss_dssp EEEETTS-
T ss_pred EEEECCCC
Confidence 77777543
No 366
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=91.19 E-value=6.5 Score=35.05 Aligned_cols=106 Identities=7% Similarity=0.038 Sum_probs=54.8
Q ss_pred ccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEE-ccCC
Q 017296 252 LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYN-YRKG 330 (374)
Q Consensus 252 ~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd-~~~~ 330 (374)
...+..+...+++.+++.++.-+-.+-||-... .... .......++.++.|+|++.+.+.+ ..|.|++=+ ....
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~--~w~~--~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~ 218 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT--TWQP--HNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDG 218 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-S--S-EE--EE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEE
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecCCCc--cceE--EccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCc
Confidence 345666666788877666666666677764221 1221 112233579999999998875544 888888766 2222
Q ss_pred eEEEE----ecccCCceEEEEEeCCCCEEEEEeCCC
Q 017296 331 SALAI----LKYHHATCNAVSFSSDCKLMASASEDS 362 (374)
Q Consensus 331 ~~~~~----~~~h~~~v~~v~~sp~~~~las~s~D~ 362 (374)
+.... +..-.-.+..++|.++++..|.|+...
T Consensus 219 ~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~ 254 (302)
T PF14870_consen 219 ETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGT 254 (302)
T ss_dssp EEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-
T ss_pred cccccccCCcccCceeeEEEEecCCCCEEEEeCCcc
Confidence 22221 111122478899999988888766443
No 367
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=91.10 E-value=7.9 Score=35.94 Aligned_cols=108 Identities=16% Similarity=0.179 Sum_probs=70.2
Q ss_pred EEEEecCCC-ceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeC---CCeEEEEEccCCeE
Q 017296 257 CLSIDESCN-GGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGW---DRRVRIYNYRKGSA 332 (374)
Q Consensus 257 ~~~~~~~~~-~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~---dg~v~iwd~~~~~~ 332 (374)
.+.+++.+. .++....++.|.+.|.+..+.... .... .....++++|+++.+..+.. ++++.+.|..+.+.
T Consensus 78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~---~~vG--~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~ 152 (381)
T COG3391 78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS---IPVG--LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV 152 (381)
T ss_pred ceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE---eeec--cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE
Confidence 344444444 344555578888888654321111 1111 13567899999987655544 78999999998888
Q ss_pred EEEecccCCceEEEEEeCCCCE-EEEEeCCCcEEEecCC
Q 017296 333 LAILKYHHATCNAVSFSSDCKL-MASASEDSTVALWELY 370 (374)
Q Consensus 333 ~~~~~~h~~~v~~v~~sp~~~~-las~s~D~~v~~W~~~ 370 (374)
......-..+ ..+++.|+|+. +++-+.+++|.+.+..
T Consensus 153 ~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~ 190 (381)
T COG3391 153 TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTS 190 (381)
T ss_pred EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCC
Confidence 7775433333 78999999994 4555688999888754
No 368
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=90.65 E-value=9.6 Score=32.31 Aligned_cols=93 Identities=15% Similarity=0.197 Sum_probs=59.9
Q ss_pred EEEecCCeEEEEEcCCCCCeEEEEEe---eec----CCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccC
Q 017296 268 ISGGADQKIVLYNLDHSTGSCVIKKE---INL----ERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHH 340 (374)
Q Consensus 268 ~s~s~D~~i~lwd~~~~~~~~~~~~~---~~~----~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~ 340 (374)
++-+.+-+|.-||.+..++....+.. ++. +...-..+++...|.+.++.-.-++|...|..+|+.+.+++-..
T Consensus 174 ~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt 253 (310)
T KOG4499|consen 174 YIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPT 253 (310)
T ss_pred EEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCC
Confidence 45666777777876555543322111 111 11112245566678777777778899999999999999998888
Q ss_pred CceEEEEEeC-CCC-EEEEEeC
Q 017296 341 ATCNAVSFSS-DCK-LMASASE 360 (374)
Q Consensus 341 ~~v~~v~~sp-~~~-~las~s~ 360 (374)
..|++++|-- +-. +.+|+.+
T Consensus 254 ~qitsccFgGkn~d~~yvT~aa 275 (310)
T KOG4499|consen 254 PQITSCCFGGKNLDILYVTTAA 275 (310)
T ss_pred CceEEEEecCCCccEEEEEehh
Confidence 9999999963 222 4445443
No 369
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=90.40 E-value=2.6 Score=39.30 Aligned_cols=91 Identities=16% Similarity=0.188 Sum_probs=60.5
Q ss_pred CCCCeEEeecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceee--eEEeccCCc-----------
Q 017296 7 PPDPVAVLRGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHG--IVSVATGPS----------- 73 (374)
Q Consensus 7 ~~~~~~~l~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~--~~~~~~~~~----------- 73 (374)
+..+...|......+.+|+.+|.+.+.+..+.=|.|.++|+.++..++..++...+.- +........
T Consensus 296 ~l~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~ 375 (415)
T PF14655_consen 296 PLPMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSS 375 (415)
T ss_pred ccceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCC
Confidence 3456677778888899999999999998888889999999988876666555432211 001110000
Q ss_pred cccc--eeeeccccCeEEEEecCCCC
Q 017296 74 IGLN--KVISQGRDGTVKCWDIENGG 97 (374)
Q Consensus 74 ~~~~--~l~s~~~D~~vrvwd~~~~~ 97 (374)
.... .++=+-.-|.|.+|.+++|.
T Consensus 376 ~~~~l~LvIyaprRg~lEvW~~~~g~ 401 (415)
T PF14655_consen 376 SRFALFLVIYAPRRGILEVWSMRQGP 401 (415)
T ss_pred CcceEEEEEEeccCCeEEEEecCCCC
Confidence 0001 23345677999999999874
No 370
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=90.34 E-value=18 Score=34.90 Aligned_cols=49 Identities=12% Similarity=0.208 Sum_probs=33.9
Q ss_pred CCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEE--EEEeCCCC-EEEEE
Q 017296 309 DSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNA--VSFSSDCK-LMASA 358 (374)
Q Consensus 309 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~--v~~sp~~~-~las~ 358 (374)
.+.+|..++.||.+..+|.++|+.+...+- .+.+.+ +.+..+|+ ++++.
T Consensus 405 ~g~~v~~g~~dG~l~ald~~tG~~lW~~~~-~~~~~a~P~~~~~~g~~yv~~~ 456 (488)
T cd00216 405 AGNLVFAGAADGYFRAFDATTGKELWKFRT-PSGIQATPMTYEVNGKQYVGVM 456 (488)
T ss_pred cCCeEEEECCCCeEEEEECCCCceeeEEEC-CCCceEcCEEEEeCCEEEEEEE
Confidence 345788888999999999999999887764 233322 33455776 45543
No 371
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=89.89 E-value=17 Score=33.98 Aligned_cols=129 Identities=22% Similarity=0.290 Sum_probs=61.6
Q ss_pred cCCcEEEEeccCCCCceeeeecCcc--CeEEEEE--ecCCCce-EEEecCCeEEEEEcCCCCCeEEEEEeeecC------
Q 017296 229 EDGSILVWDIRNPGIPLTAMKVHLE--PVLCLSI--DESCNGG-ISGGADQKIVLYNLDHSTGSCVIKKEINLE------ 297 (374)
Q Consensus 229 ~dg~i~iwdl~~~~~~~~~~~~h~~--~v~~~~~--~~~~~~~-~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~------ 297 (374)
-...+.+||+++ ...++++.--.+ ....+.| +|+.... +.+....+|-+|--+ ..+.+...+.+...
T Consensus 220 yG~~l~vWD~~~-r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~-~~g~W~a~kVi~ip~~~v~~ 297 (461)
T PF05694_consen 220 YGHSLHVWDWST-RKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKD-DDGEWAAEKVIDIPAKKVEG 297 (461)
T ss_dssp S--EEEEEETTT-TEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE--ETTEEEEEEEEEE--EE--S
T ss_pred ccCeEEEEECCC-CcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEc-CCCCeeeeEEEECCCcccCc
Confidence 357899999986 455666544332 3555666 4554443 444445566665432 23334333222211
Q ss_pred -------------CCCeEEEEECCCCCEEEEEeC-CCeEEEEEccCC---eEEEEec-c-------c--------CCceE
Q 017296 298 -------------RPGISGTSIRPDSKIAATAGW-DRRVRIYNYRKG---SALAILK-Y-------H--------HATCN 344 (374)
Q Consensus 298 -------------~~~v~~~~~sp~~~~l~s~~~-dg~v~iwd~~~~---~~~~~~~-~-------h--------~~~v~ 344 (374)
-.-++.+.+|.|.++|...++ +|.||-||+.+. +...+.. + | .+...
T Consensus 298 ~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPq 377 (461)
T PF05694_consen 298 WILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQ 377 (461)
T ss_dssp S---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S---
T ss_pred ccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCC
Confidence 123678999999999977775 899999999764 3332211 1 1 12345
Q ss_pred EEEEeCCCCEE-EEEe
Q 017296 345 AVSFSSDCKLM-ASAS 359 (374)
Q Consensus 345 ~v~~sp~~~~l-as~s 359 (374)
-|..|-||+.| +|.|
T Consensus 378 MvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 378 MVQLSLDGKRLYVTNS 393 (461)
T ss_dssp -EEE-TTSSEEEEE--
T ss_pred eEEEccCCeEEEEEee
Confidence 67888999865 4443
No 372
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=89.46 E-value=14 Score=32.32 Aligned_cols=139 Identities=21% Similarity=0.285 Sum_probs=75.9
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEE-----EE-----
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVI-----KK----- 292 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~-----~~----- 292 (374)
.++.|+++| |.++++..+....... +..+|..+.+-++...++. =.|+.+.+++++.-...... ..
T Consensus 9 ~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llv-Lsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~ 84 (275)
T PF00780_consen 9 RLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLV-LSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLP 84 (275)
T ss_pred EEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEE-EcCCccEEEEchhhcccccccccccccccccc
Confidence 588898888 9999984333323222 3445888988776554433 34699999998643211100 00
Q ss_pred eeecCCCCeEEEE--ECC-CCCEEEEEeCCCeEEEEEccCC-----eEEEEecccCCceEEEEEeCCCCEEEEEeCCCcE
Q 017296 293 EINLERPGISGTS--IRP-DSKIAATAGWDRRVRIYNYRKG-----SALAILKYHHATCNAVSFSSDCKLMASASEDSTV 364 (374)
Q Consensus 293 ~~~~~~~~v~~~~--~sp-~~~~l~s~~~dg~v~iwd~~~~-----~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v 364 (374)
..-....++...+ -.+ ....|+.+ ..++|.+|..... +.++.+. -+..+.+++|. +..|+-|..++ .
T Consensus 85 ~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~~-f 159 (275)
T PF00780_consen 85 TKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSKG-F 159 (275)
T ss_pred ccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCCc-e
Confidence 0001112343333 112 33344444 4669999888653 3444544 34678888987 34555555444 3
Q ss_pred EEecCC
Q 017296 365 ALWELY 370 (374)
Q Consensus 365 ~~W~~~ 370 (374)
.+-|+.
T Consensus 160 ~~idl~ 165 (275)
T PF00780_consen 160 YLIDLN 165 (275)
T ss_pred EEEecC
Confidence 334443
No 373
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.03 E-value=8.6 Score=36.49 Aligned_cols=72 Identities=11% Similarity=0.206 Sum_probs=48.4
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEE---------ccCCeEEEE----------e-cccCCceEEEEEeCCC---CEEEE
Q 017296 301 ISGTSIRPDSKIAATAGWDRRVRIYN---------YRKGSALAI----------L-KYHHATCNAVSFSSDC---KLMAS 357 (374)
Q Consensus 301 v~~~~~sp~~~~l~s~~~dg~v~iwd---------~~~~~~~~~----------~-~~h~~~v~~v~~sp~~---~~las 357 (374)
|..+..+|.|..++-+|-+|-+-+.= .++++..-. + ....-.+.-++|+|+. ..|.-
T Consensus 106 V~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~i 185 (741)
T KOG4460|consen 106 VYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVL 185 (741)
T ss_pred EEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEE
Confidence 66788899999999999999876642 123332111 0 1112245667899975 46666
Q ss_pred EeCCCcEEEecCCCC
Q 017296 358 ASEDSTVALWELYPP 372 (374)
Q Consensus 358 ~s~D~~v~~W~~~~~ 372 (374)
-+.|.++|++++..+
T Consensus 186 L~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 186 LTSDNVIRIYSLSEP 200 (741)
T ss_pred EecCcEEEEEecCCc
Confidence 678999999998643
No 374
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=88.81 E-value=1.6 Score=26.08 Aligned_cols=31 Identities=23% Similarity=0.214 Sum_probs=24.8
Q ss_pred CceeEEEEeCC-C--CEEEEecCCCcEEEEeCcc
Q 017296 19 ASVTDVCFHQT-K--PILFAGTTGGELRIWDTVQ 49 (374)
Q Consensus 19 ~~V~~l~~~~~-~--~~l~s~s~D~~v~vWd~~~ 49 (374)
++|+++.|+|+ + .+|+-+-.-+.|-|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 47899999974 4 5788777779999999864
No 375
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=88.65 E-value=0.9 Score=41.68 Aligned_cols=89 Identities=17% Similarity=0.237 Sum_probs=51.4
Q ss_pred CCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEE-Eecc-------c-----
Q 017296 273 DQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALA-ILKY-------H----- 339 (374)
Q Consensus 273 D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~-------h----- 339 (374)
.+.+.++|++....... ......+....|||+|+.+|-.. ++.+.+++..+++..+ +..+ -
T Consensus 22 ~~~y~i~d~~~~~~~~l-----~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvy 95 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPL-----TPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVY 95 (353)
T ss_dssp EEEEEEEETTTTEEEES-----S-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHH
T ss_pred ceeEEEEecCCCceEEC-----cCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceec
Confidence 34678888875421111 11124577889999999988664 7889999887664432 2222 0
Q ss_pred ----CCceEEEEEeCCCCEEEEEe-CCCcEEEe
Q 017296 340 ----HATCNAVSFSSDCKLMASAS-EDSTVALW 367 (374)
Q Consensus 340 ----~~~v~~v~~sp~~~~las~s-~D~~v~~W 367 (374)
.+.-..+-||||+++||... .+..|+.+
T Consensus 96 eEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~ 128 (353)
T PF00930_consen 96 EEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEY 128 (353)
T ss_dssp HHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EE
T ss_pred cccccccccceEECCCCCEEEEEEECCcCCceE
Confidence 11235578999999998764 34444444
No 376
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=88.37 E-value=3.7 Score=34.80 Aligned_cols=65 Identities=12% Similarity=0.121 Sum_probs=48.1
Q ss_pred EECCCCCEEEEEeCCCeEEEEEccCCeEEEE-------ec-------ccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 305 SIRPDSKIAATAGWDRRVRIYNYRKGSALAI-------LK-------YHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 305 ~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~-------~~-------~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
.+..++.++++-+.+|.+.+||+.+++.+.. +. .....|..+.++.+|.-|++-+ +|....|+.+
T Consensus 17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 3556788888899999999999998775421 22 2446788888999999777765 4677877654
No 377
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=88.33 E-value=21 Score=32.92 Aligned_cols=134 Identities=21% Similarity=0.235 Sum_probs=56.0
Q ss_pred EEEEeccCCCCceeeeecCccC-eEEE-EEecCCCceEE-----EecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEE
Q 017296 233 ILVWDIRNPGIPLTAMKVHLEP-VLCL-SIDESCNGGIS-----GGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTS 305 (374)
Q Consensus 233 i~iwdl~~~~~~~~~~~~h~~~-v~~~-~~~~~~~~~~s-----~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~ 305 (374)
-|||=++..+.....+..+... +..- .|.+++..+.- ++.+..|.-.|.+....... .++ ....-+-
T Consensus 216 ~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~--~~~----p~~~H~~ 289 (386)
T PF14583_consen 216 QRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRL--MEM----PWCSHFM 289 (386)
T ss_dssp -SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEE--EEE-----SEEEEE
T ss_pred eEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEE--EeC----CceeeeE
Confidence 3778776544434444333221 1112 22455543321 22244555555543322221 111 2344456
Q ss_pred ECCCCCEEEEEeCCC----------------eEEEEEccCCeEEEEecccC---------Cc--eEEEEEeCCCCEE-EE
Q 017296 306 IRPDSKIAATAGWDR----------------RVRIYNYRKGSALAILKYHH---------AT--CNAVSFSSDCKLM-AS 357 (374)
Q Consensus 306 ~sp~~~~l~s~~~dg----------------~v~iwd~~~~~~~~~~~~h~---------~~--v~~v~~sp~~~~l-as 357 (374)
.++|+++++-=|.|. .|.+++++.++... +..|. .. =....|+|||++| .+
T Consensus 290 ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~-l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~ 368 (386)
T PF14583_consen 290 SSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRK-LARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFR 368 (386)
T ss_dssp E-TTSSEEEEEE-------------------EEEEEETTTTEEEE-EEE-------BTTBSSTT----EE-TTSSEEEEE
T ss_pred EcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceee-eeeccCcceeecCCCccCCCCCccCCCCCEEEEE
Confidence 679999987555543 45567787665432 22221 11 2457899999955 56
Q ss_pred EeCCCcEEEecCCCCC
Q 017296 358 ASEDSTVALWELYPPH 373 (374)
Q Consensus 358 ~s~D~~v~~W~~~~~~ 373 (374)
+...|...|+-+..|+
T Consensus 369 Sd~~G~~~vY~v~i~~ 384 (386)
T PF14583_consen 369 SDMEGPPAVYLVEIPD 384 (386)
T ss_dssp E-TTSS-EEEEEE--C
T ss_pred CCCCCCccEEEEeCcc
Confidence 6778888887666554
No 378
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.24 E-value=11 Score=32.57 Aligned_cols=59 Identities=12% Similarity=0.098 Sum_probs=45.0
Q ss_pred CCEEEEEeCCCeEEEEEccCCeEEEEecccCCceE-EEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 310 SKIAATAGWDRRVRIYNYRKGSALAILKYHHATCN-AVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 310 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~-~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
+.+++.|+..|.+.+-+.++|++++.+..-+ .|. .....+++.++-.++.|++.+.-|.
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~-~vk~~a~~d~~~glIycgshd~~~yalD~ 122 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILE-TVKVRAQCDFDGGLIYCGSHDGNFYALDP 122 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehh-hhccceEEcCCCceEEEecCCCcEEEecc
Confidence 4468999999999999999998777665322 222 2345679999999999999887654
No 379
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.86 E-value=1.9 Score=37.42 Aligned_cols=60 Identities=17% Similarity=0.312 Sum_probs=46.0
Q ss_pred EECCCCCEEEEEeCC-----CeEEEEEccCC-eEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEE
Q 017296 305 SIRPDSKIAATAGWD-----RRVRIYNYRKG-SALAILKYHHATCNAVSFSSDCKLMASASEDSTVAL 366 (374)
Q Consensus 305 ~~sp~~~~l~s~~~d-----g~v~iwd~~~~-~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~ 366 (374)
+|||||++|...-.| |-|-|||.+.+ +.+..+..|.-....+.+.+||+.|+-+. |-|+.
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIet 185 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIET 185 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC--Cceec
Confidence 689999999876543 67999998743 45667888887888899999999988653 44443
No 380
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=87.78 E-value=3.7 Score=23.87 Aligned_cols=31 Identities=13% Similarity=0.180 Sum_probs=22.8
Q ss_pred CCCCEEEEEe-CCCeEEEEEccCCeEEEEecc
Q 017296 308 PDSKIAATAG-WDRRVRIYNYRKGSALAILKY 338 (374)
Q Consensus 308 p~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~ 338 (374)
|+++.+..+. .+++|.++|..+++.+..+.-
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 5667655444 578999999988887776654
No 381
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=87.70 E-value=22 Score=36.00 Aligned_cols=73 Identities=15% Similarity=0.240 Sum_probs=49.8
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEEcc----------CCeE---EEEe--------cccCCceEEEEEeCC---CCEE
Q 017296 300 GISGTSIRPDSKIAATAGWDRRVRIYNYR----------KGSA---LAIL--------KYHHATCNAVSFSSD---CKLM 355 (374)
Q Consensus 300 ~v~~~~~sp~~~~l~s~~~dg~v~iwd~~----------~~~~---~~~~--------~~h~~~v~~v~~sp~---~~~l 355 (374)
.|..+.++|+|+++|..|..|-+ |-.+- .++. ..++ ..+...|..++|+|. +..|
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 47889999999999988876544 33331 1111 1111 123457889999996 4677
Q ss_pred EEEeCCCcEEEecCCCCC
Q 017296 356 ASASEDSTVALWELYPPH 373 (374)
Q Consensus 356 as~s~D~~v~~W~~~~~~ 373 (374)
+-=..|+++|+||+..|.
T Consensus 165 ~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEecCCEEEEEecCCCC
Confidence 777789999999997654
No 382
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=86.96 E-value=25 Score=32.41 Aligned_cols=103 Identities=14% Similarity=0.062 Sum_probs=56.8
Q ss_pred CeEEEEEecCCCceEEEecCCeEEEEEcCCC---C-CeEEEEEeeec----CCCCeEEEEECCCCCEEEEEeCC------
Q 017296 254 PVLCLSIDESCNGGISGGADQKIVLYNLDHS---T-GSCVIKKEINL----ERPGISGTSIRPDSKIAATAGWD------ 319 (374)
Q Consensus 254 ~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~---~-~~~~~~~~~~~----~~~~v~~~~~sp~~~~l~s~~~d------ 319 (374)
....+.+.+++ ++.++.....++.|.+.. + ....+...+.. +......++|.|||.+.++-+..
T Consensus 73 ~p~Gi~~~~~G--lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~ 150 (367)
T TIGR02604 73 MVTGLAVAVGG--VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVT 150 (367)
T ss_pred CccceeEecCC--EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceec
Confidence 34567776666 444555544444455421 1 11122222221 12446789999999876655521
Q ss_pred -------------CeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEe
Q 017296 320 -------------RRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASAS 359 (374)
Q Consensus 320 -------------g~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s 359 (374)
|.|..+|...++ +..+.......+.++|+|+|+++++-.
T Consensus 151 ~~~~~~~~~~~~~g~i~r~~pdg~~-~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 151 RPGTSDESRQGLGGGLFRYNPDGGK-LRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cCCCccCcccccCceEEEEecCCCe-EEEEecCcCCCccceECCCCCEEEEcc
Confidence 445556654433 334433334567899999999887644
No 383
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=86.94 E-value=19 Score=31.08 Aligned_cols=183 Identities=15% Similarity=0.196 Sum_probs=90.3
Q ss_pred ceEEEcccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEe-cCCcEEEEeccC
Q 017296 162 KYMAVAGEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY-EDGSILVWDIRN 240 (374)
Q Consensus 162 ~~~~~~~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs-~dg~i~iwdl~~ 240 (374)
+.++++....+.|.-.++ +|+.+..++-.. +. ..- .+ .+.. .+ .++..+ .++.+.++++..
T Consensus 34 ~tLfaV~d~~~~i~els~-~G~vlr~i~l~g------~~---D~E--gI-~y~g---~~--~~vl~~Er~~~L~~~~~~~ 95 (248)
T PF06977_consen 34 GTLFAVQDEPGEIYELSL-DGKVLRRIPLDG------FG---DYE--GI-TYLG---NG--RYVLSEERDQRLYIFTIDD 95 (248)
T ss_dssp TEEEEEETTTTEEEEEET-T--EEEEEE-SS-------S---SEE--EE-EE-S---TT--EEEEEETTTTEEEEEEE--
T ss_pred CeEEEEECCCCEEEEEcC-CCCEEEEEeCCC------CC---Cce--eE-EEEC---CC--EEEEEEcCCCcEEEEEEec
Confidence 335555566677766676 467766654211 11 100 11 1111 12 244444 488899998843
Q ss_pred CCCc--e---eeee-----cCccCeEEEEEecCCCceEEEecCCeEEEEEcCC--CCCeEEEEEe-----eecCCCCeEE
Q 017296 241 PGIP--L---TAMK-----VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH--STGSCVIKKE-----INLERPGISG 303 (374)
Q Consensus 241 ~~~~--~---~~~~-----~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~--~~~~~~~~~~-----~~~~~~~v~~ 303 (374)
.... . +.+. .+...+-.+++|+....++.+-.....+++.++. .......... .......+++
T Consensus 96 ~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~ 175 (248)
T PF06977_consen 96 DTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSG 175 (248)
T ss_dssp --TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---E
T ss_pred cccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccc
Confidence 2211 1 1111 2344588999999888888887777778887764 1111111110 1112234788
Q ss_pred EEECCC-CCEEEEEeCCCeEEEEEccCCeEEEEe--cc--c-----CCceEEEEEeCCCCEEEEEeCCCcE
Q 017296 304 TSIRPD-SKIAATAGWDRRVRIYNYRKGSALAIL--KY--H-----HATCNAVSFSSDCKLMASASEDSTV 364 (374)
Q Consensus 304 ~~~sp~-~~~l~s~~~dg~v~iwd~~~~~~~~~~--~~--h-----~~~v~~v~~sp~~~~las~s~D~~v 364 (374)
++|+|. +.+++-....+.+..+| .+|+.+..+ .. | -.+.-.|+|.++|.+.+++ +-+..
T Consensus 176 l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlf 244 (248)
T PF06977_consen 176 LSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLF 244 (248)
T ss_dssp EEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEE
T ss_pred eEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceE
Confidence 999996 45667777889999999 467765543 22 1 1357789999999866653 44433
No 384
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=86.66 E-value=2 Score=39.37 Aligned_cols=50 Identities=22% Similarity=0.250 Sum_probs=36.5
Q ss_pred CCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 319 DRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 319 dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
.+...++|+.+++.. .+......+....|||+|+.||... |+.|.+++..
T Consensus 22 ~~~y~i~d~~~~~~~-~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~ 71 (353)
T PF00930_consen 22 KGDYYIYDIETGEIT-PLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLA 71 (353)
T ss_dssp EEEEEEEETTTTEEE-ESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESST
T ss_pred ceeEEEEecCCCceE-ECcCCccccccceeecCCCeeEEEe-cCceEEEECC
Confidence 457888999886644 3433356788899999999999876 6788888763
No 385
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=86.48 E-value=7.5 Score=36.35 Aligned_cols=73 Identities=16% Similarity=0.265 Sum_probs=50.3
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccC-CceEEEEEe-CCC----------------C-EEEEEeC
Q 017296 300 GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHH-ATCNAVSFS-SDC----------------K-LMASASE 360 (374)
Q Consensus 300 ~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~-~~v~~v~~s-p~~----------------~-~las~s~ 360 (374)
.+.+++.+|++++.|....=|+|.++|+..+..+..++|-. +.+.-+... +.. . +++-+-.
T Consensus 309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr 388 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR 388 (415)
T ss_pred eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence 47789999999999988888999999999887666555432 122111111 111 1 3466888
Q ss_pred CCcEEEecCCCC
Q 017296 361 DSTVALWELYPP 372 (374)
Q Consensus 361 D~~v~~W~~~~~ 372 (374)
-|.|.||.+..+
T Consensus 389 Rg~lEvW~~~~g 400 (415)
T PF14655_consen 389 RGILEVWSMRQG 400 (415)
T ss_pred CCeEEEEecCCC
Confidence 999999998654
No 386
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=86.24 E-value=24 Score=32.01 Aligned_cols=107 Identities=18% Similarity=0.180 Sum_probs=55.8
Q ss_pred eEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEE-ee-ecCCCCeEEEEECCC----CCEEEEEeCC--------C
Q 017296 255 VLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKK-EI-NLERPGISGTSIRPD----SKIAATAGWD--------R 320 (374)
Q Consensus 255 v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~-~~-~~~~~~v~~~~~sp~----~~~l~s~~~d--------g 320 (374)
.+.|++.|++..++ +...|.|++.+.+.......... +. .....++..++|+|+ +.+.++.... .
T Consensus 4 P~~~a~~pdG~l~v-~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~ 82 (331)
T PF07995_consen 4 PRSMAFLPDGRLLV-AERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDN 82 (331)
T ss_dssp EEEEEEETTSCEEE-EETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEE
T ss_pred ceEEEEeCCCcEEE-EeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcce
Confidence 46788888876544 56699999998332210111111 11 123356889999995 4433333321 2
Q ss_pred eEEEEEccCC-------eEE-EEecc---cCCceEEEEEeCCCCEEEEEeCCC
Q 017296 321 RVRIYNYRKG-------SAL-AILKY---HHATCNAVSFSSDCKLMASASEDS 362 (374)
Q Consensus 321 ~v~iwd~~~~-------~~~-~~~~~---h~~~v~~v~~sp~~~~las~s~D~ 362 (374)
.|..|.+..+ +.+ ..+.. ....-..|+|.|||.+.++.+..+
T Consensus 83 ~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~ 135 (331)
T PF07995_consen 83 RVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGG 135 (331)
T ss_dssp EEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TT
T ss_pred eeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCC
Confidence 4555655443 111 12222 223456799999999777766444
No 387
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=85.65 E-value=11 Score=34.70 Aligned_cols=58 Identities=14% Similarity=0.130 Sum_probs=32.7
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEEccC-------CeEE-EEecc----cCCceEEEEEeCCCCEEEEEe
Q 017296 300 GISGTSIRPDSKIAATAGWDRRVRIYNYRK-------GSAL-AILKY----HHATCNAVSFSSDCKLMASAS 359 (374)
Q Consensus 300 ~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~-------~~~~-~~~~~----h~~~v~~v~~sp~~~~las~s 359 (374)
....+++.+++ +++ ++...-.++.|... .+.+ ..+.. +....+.++|.|||++.++-+
T Consensus 73 ~p~Gi~~~~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 73 MVTGLAVAVGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred CccceeEecCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 35678999998 544 44443333334421 1112 22322 234577899999999776554
No 388
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=85.25 E-value=5.2 Score=22.94 Aligned_cols=30 Identities=10% Similarity=0.199 Sum_probs=18.9
Q ss_pred ccCCceEEEEEeCCCCEEEEE-eCC--CcEEEe
Q 017296 338 YHHATCNAVSFSSDCKLMASA-SED--STVALW 367 (374)
Q Consensus 338 ~h~~~v~~v~~sp~~~~las~-s~D--~~v~~W 367 (374)
...+.-...+|||||+.|+.+ ..+ +.-.||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344556778999999977655 444 555555
No 389
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=85.00 E-value=45 Score=33.52 Aligned_cols=105 Identities=11% Similarity=0.099 Sum_probs=67.8
Q ss_pred ceEEEEEecCCcEEEEeccC-------C----C--------CceeeeecCccCeEEEEEe--cCCCceEEEecCCeEEEE
Q 017296 221 FVNVLAGYEDGSILVWDIRN-------P----G--------IPLTAMKVHLEPVLCLSID--ESCNGGISGGADQKIVLY 279 (374)
Q Consensus 221 ~~~~~~gs~dg~i~iwdl~~-------~----~--------~~~~~~~~h~~~v~~~~~~--~~~~~~~s~s~D~~i~lw 279 (374)
...|+.+.+||.|.+|..+. . . .|...+. .......++++ ...+.+|.++.-..|.+|
T Consensus 114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 34577899999999997621 0 0 1122222 23478888887 666777888888899998
Q ss_pred EcCCCCCeEEEEEeeecCCCCeEEEEECCCC---C---EEEEEeCCCeEEEEEc
Q 017296 280 NLDHSTGSCVIKKEINLERPGISGTSIRPDS---K---IAATAGWDRRVRIYNY 327 (374)
Q Consensus 280 d~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~---~---~l~s~~~dg~v~iwd~ 327 (374)
-+.....+.....+. .+...|.+++|-++. . .|++++=.|.+.+|++
T Consensus 193 af~l~~~r~~~~~s~-~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSH-QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecccccccccccc-ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 775432221111111 134568889986543 2 7888889999999888
No 390
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=84.86 E-value=7.4 Score=38.09 Aligned_cols=36 Identities=22% Similarity=0.406 Sum_probs=28.2
Q ss_pred eEEEEECC----CCCEEEEEeCCCeEEEEEccCCeEEEEe
Q 017296 301 ISGTSIRP----DSKIAATAGWDRRVRIYNYRKGSALAIL 336 (374)
Q Consensus 301 v~~~~~sp----~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 336 (374)
..++++++ +..++++-+.|+++|+||+.+++++.+.
T Consensus 217 ~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 217 AASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred cceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 45566666 7788999999999999999999986554
No 391
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=84.78 E-value=35 Score=32.06 Aligned_cols=48 Identities=23% Similarity=0.302 Sum_probs=34.9
Q ss_pred cEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecC
Q 017296 41 ELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE 94 (374)
Q Consensus 41 ~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~ 94 (374)
.|.|++. .|+.+..+.-.. ..++.+.|.. ...|+....||+++++|+.
T Consensus 62 ~I~iys~-sG~ll~~i~w~~--~~iv~~~wt~---~e~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDS--GRIVGMGWTD---DEELVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEEECC-CCCEeEEEEECC--CCEEEEEECC---CCeEEEEEcCCEEEEEeCC
Confidence 5888885 567666543222 5688888875 3567888899999999986
No 392
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=84.72 E-value=10 Score=37.82 Aligned_cols=106 Identities=14% Similarity=0.157 Sum_probs=69.5
Q ss_pred CCCceEEEecCCeEEEEEcCC-------C-------CCeEEEE--EeeecCCCCeEEEEEC--CCCCEEEEEeCCCeEEE
Q 017296 263 SCNGGISGGADQKIVLYNLDH-------S-------TGSCVIK--KEINLERPGISGTSIR--PDSKIAATAGWDRRVRI 324 (374)
Q Consensus 263 ~~~~~~s~s~D~~i~lwd~~~-------~-------~~~~~~~--~~~~~~~~~v~~~~~s--p~~~~l~s~~~dg~v~i 324 (374)
....|+.+..||.|.+|.++. . ....... ..... ...+++++++ ...++||.++.-..|.|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v-~~SaWGLdIh~~~~~rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRV-GASAWGLDIHDYKKSRLIAVSSNSQEVTV 191 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeec-CCceeEEEEEecCcceEEEEecCCceEEE
Confidence 344678899999999997631 0 0000000 11111 2358899998 88889998888888888
Q ss_pred EEccC--CeEEEE-ecccCCceEEEEEeCCC------CEEEEEeCCCcEEEecC
Q 017296 325 YNYRK--GSALAI-LKYHHATCNAVSFSSDC------KLMASASEDSTVALWEL 369 (374)
Q Consensus 325 wd~~~--~~~~~~-~~~h~~~v~~v~~sp~~------~~las~s~D~~v~~W~~ 369 (374)
|-... .+.... -..|...|.+|.|-++. .+|+.++-.|.+-+|++
T Consensus 192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 85543 221111 11266789999998743 27888999999999887
No 393
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=83.50 E-value=9.1 Score=30.99 Aligned_cols=28 Identities=14% Similarity=0.252 Sum_probs=23.5
Q ss_pred ceEEEEEeCCC------CEEEEEeCCCcEEEecC
Q 017296 342 TCNAVSFSSDC------KLMASASEDSTVALWEL 369 (374)
Q Consensus 342 ~v~~v~~sp~~------~~las~s~D~~v~~W~~ 369 (374)
.+..++|||-| .+||.-..++.|.||.-
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~ 120 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGP 120 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEec
Confidence 78889999943 38899999999999965
No 394
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=82.46 E-value=42 Score=31.17 Aligned_cols=182 Identities=16% Similarity=0.117 Sum_probs=103.4
Q ss_pred ccCCCeEEEEecCCCceeEEeccCccCCCCCcCCCCCcceeEEEeeecCCCCCceEEEEEe--cCCcEEEEeccCCCCce
Q 017296 168 GEQLSEVEIWDLNTAERCTRLHQNSCGGSPNFSSKGRGMCMAVQAYLPSKSQGFVNVLAGY--EDGSILVWDIRNPGIPL 245 (374)
Q Consensus 168 ~~~d~~i~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs--~dg~i~iwdl~~~~~~~ 245 (374)
...++.|.+.|+++.+.+........+ ..+ .+.+ .+....++-+ .++++-+.|-.+.. ..
T Consensus 92 ~~~~~~v~vid~~~~~~~~~~~vG~~P---------~~~-----~~~~---~~~~vYV~n~~~~~~~vsvid~~t~~-~~ 153 (381)
T COG3391 92 TGDSNTVSVIDTATNTVLGSIPVGLGP---------VGL-----AVDP---DGKYVYVANAGNGNNTVSVIDAATNK-VT 153 (381)
T ss_pred cCCCCeEEEEcCcccceeeEeeeccCC---------ceE-----EECC---CCCEEEEEecccCCceEEEEeCCCCe-EE
Confidence 334678999998777665554322100 000 1111 2222344444 46888888875432 23
Q ss_pred eeeecCccCeEEEEEecCCCceEE-EecCCeEEEEEcCCCCCeEEEEEe-eecCCCCeEEEEECCCCCEEEEEeCC---C
Q 017296 246 TAMKVHLEPVLCLSIDESCNGGIS-GGADQKIVLYNLDHSTGSCVIKKE-INLERPGISGTSIRPDSKIAATAGWD---R 320 (374)
Q Consensus 246 ~~~~~h~~~v~~~~~~~~~~~~~s-~s~D~~i~lwd~~~~~~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~s~~~d---g 320 (374)
.....-..| ..+.+++++..++. ...++++.+.|........ .... .......-..+.++|+++++...... +
T Consensus 154 ~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~ 231 (381)
T COG3391 154 ATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSN 231 (381)
T ss_pred EEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCc
Confidence 333332345 78899999885544 4578999999865432110 0000 00111234568999999976655544 5
Q ss_pred eEEEEEccCCeEEEE-ecccCCceEEEEEeCCCCEEEEE-eCCCcEEEecC
Q 017296 321 RVRIYNYRKGSALAI-LKYHHATCNAVSFSSDCKLMASA-SEDSTVALWEL 369 (374)
Q Consensus 321 ~v~iwd~~~~~~~~~-~~~h~~~v~~v~~sp~~~~las~-s~D~~v~~W~~ 369 (374)
++...|..++..... ...-......++.+|+|+.+-.. +..+.|.+-|.
T Consensus 232 ~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~ 282 (381)
T COG3391 232 NVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDG 282 (381)
T ss_pred eEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeC
Confidence 899999888776554 22111145668899999976655 44466666554
No 395
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=81.33 E-value=26 Score=32.80 Aligned_cols=98 Identities=10% Similarity=0.121 Sum_probs=47.1
Q ss_pred cCCeEEEEEcCCCCCeEEEEEeeecCCC--CeEEEEEC--CCCCE-EEEEeCCCeEEEEEc-cCCe----EEEEecc---
Q 017296 272 ADQKIVLYNLDHSTGSCVIKKEINLERP--GISGTSIR--PDSKI-AATAGWDRRVRIYNY-RKGS----ALAILKY--- 338 (374)
Q Consensus 272 ~D~~i~lwd~~~~~~~~~~~~~~~~~~~--~v~~~~~s--p~~~~-l~s~~~dg~v~iwd~-~~~~----~~~~~~~--- 338 (374)
..+++.+||+...... +.+..... ....+.|. |+..+ ++.+-...+|.+|-. .+++ .+..+..
T Consensus 220 yG~~l~vWD~~~r~~~----Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v 295 (461)
T PF05694_consen 220 YGHSLHVWDWSTRKLL----QTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKV 295 (461)
T ss_dssp S--EEEEEETTTTEEE----EEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE-
T ss_pred ccCeEEEEECCCCcEe----eEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCccc
Confidence 3579999999754322 22222222 24456664 44433 333335556666644 3332 1111111
Q ss_pred --------------cCCceEEEEEeCCCCEE-EEEeCCCcEEEecCCCCC
Q 017296 339 --------------HHATCNAVSFSSDCKLM-ASASEDSTVALWELYPPH 373 (374)
Q Consensus 339 --------------h~~~v~~v~~sp~~~~l-as~s~D~~v~~W~~~~~~ 373 (374)
-+.-|+.+.+|.|.++| ++.-.+|.||.||+++|+
T Consensus 296 ~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 296 EGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp -SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred CcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence 02457888999999966 677889999999999886
No 396
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=81.16 E-value=16 Score=32.59 Aligned_cols=67 Identities=12% Similarity=0.126 Sum_probs=37.0
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEe-cccCCceEEEEEeCCCCEEEEEeCCCcEEEe
Q 017296 299 PGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAIL-KYHHATCNAVSFSSDCKLMASASEDSTVALW 367 (374)
Q Consensus 299 ~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~-~~h~~~v~~v~~sp~~~~las~s~D~~v~~W 367 (374)
..+..+..++||++++.+..-....-||--.. ..... +.-..+|.++.|.||+.+.+.+ ..+.|++=
T Consensus 145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~-~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s 212 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQT-TWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFS 212 (302)
T ss_dssp --EEEEEE-TTS-EEEEETTSSEEEEE-TT-S-S-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEE
T ss_pred ceeEeEEECCCCcEEEEECcccEEEEecCCCc-cceEEccCccceehhceecCCCCEEEEe-CCcEEEEc
Confidence 45777888999999887765555566764321 12222 2345789999999998865543 66766653
No 397
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=80.70 E-value=14 Score=34.61 Aligned_cols=48 Identities=19% Similarity=0.482 Sum_probs=36.2
Q ss_pred eEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 321 RVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 321 ~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
.|+||+. .|+.+..+.-..+.+.++.|+.+ +.|+.-..||+++++|+.
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCC
Confidence 5888876 57777765433489999999876 455556789999999873
No 398
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=80.39 E-value=48 Score=32.93 Aligned_cols=69 Identities=16% Similarity=0.089 Sum_probs=46.8
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEec-ccCCceEEEEEe--CCCCEEEEEeCCCcEEEecC
Q 017296 301 ISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILK-YHHATCNAVSFS--SDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 301 v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~h~~~v~~v~~s--p~~~~las~s~D~~v~~W~~ 369 (374)
..-+.-|.-++..+.-+...++.|||.+.+..-..-. ...+.|..++|. |||+.+.+.|-...|.++.-
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 3444445556555555555679999998776332211 245689999986 78998888888888888743
No 399
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=79.94 E-value=3.3 Score=40.59 Aligned_cols=38 Identities=16% Similarity=0.342 Sum_probs=27.9
Q ss_pred CceeEEEEeC----CCCEEEEecCCCcEEEEeCcccceeeee
Q 017296 19 ASVTDVCFHQ----TKPILFAGTTGGELRIWDTVQHRTVSSS 56 (374)
Q Consensus 19 ~~V~~l~~~~----~~~~l~s~s~D~~v~vWd~~~~~~~~~~ 56 (374)
..+..++++. +..+|++-+.|+++|+||+.+++++.+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 3445556655 6789999999999999999999886543
No 400
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=79.74 E-value=40 Score=29.23 Aligned_cols=107 Identities=12% Similarity=0.061 Sum_probs=58.0
Q ss_pred CeEEEEEecCCCceEEEe-cCC--eEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEE-ccC
Q 017296 254 PVLCLSIDESCNGGISGG-ADQ--KIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYN-YRK 329 (374)
Q Consensus 254 ~v~~~~~~~~~~~~~s~s-~D~--~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd-~~~ 329 (374)
.+...++++++..++.-. .++ .+.++..+ ....... ....+..-+|++++...+....+...+++. ..+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-----~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~ 97 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-----TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSAS 97 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-----cCCccccccccCCCCEEEEEcCCCceEEEEecCC
Confidence 455566666665544333 233 44444332 1111111 122466678999988777666677777773 233
Q ss_pred CeEE-EEecccC--CceEEEEEeCCCCEEEEEe---CCCcEEEe
Q 017296 330 GSAL-AILKYHH--ATCNAVSFSSDCKLMASAS---EDSTVALW 367 (374)
Q Consensus 330 ~~~~-~~~~~h~--~~v~~v~~sp~~~~las~s---~D~~v~~W 367 (374)
++.. ....... ..|..+++||||..+|-.. .++.|.+=
T Consensus 98 g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va 141 (253)
T PF10647_consen 98 GTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVA 141 (253)
T ss_pred CcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEE
Confidence 3221 1122121 2899999999999776544 34555543
No 401
>PHA02713 hypothetical protein; Provisional
Probab=78.99 E-value=42 Score=33.05 Aligned_cols=59 Identities=10% Similarity=0.119 Sum_probs=34.2
Q ss_pred CCCEEEEEeCC------CeEEEEEccC-Ce--EEEEecccCCceEEEEEeCCCCEEEEEeCCC--cEEEecC
Q 017296 309 DSKIAATAGWD------RRVRIYNYRK-GS--ALAILKYHHATCNAVSFSSDCKLMASASEDS--TVALWEL 369 (374)
Q Consensus 309 ~~~~l~s~~~d------g~v~iwd~~~-~~--~~~~~~~h~~~v~~v~~sp~~~~las~s~D~--~v~~W~~ 369 (374)
++++.+.||.+ ..|..||..+ .+ .+..+.........+++ +|+..+.|+.|+ ++..+|.
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~ 532 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNV 532 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCc
Confidence 46777777764 2467788876 32 22233322222333333 888999999888 5554544
No 402
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=78.71 E-value=62 Score=30.82 Aligned_cols=107 Identities=23% Similarity=0.251 Sum_probs=57.8
Q ss_pred ccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEE-EEee-e-cCCCCeEEEEECCCC------CEEEEEe-----
Q 017296 252 LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVI-KKEI-N-LERPGISGTSIRPDS------KIAATAG----- 317 (374)
Q Consensus 252 ~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~-~~~~-~-~~~~~v~~~~~sp~~------~~l~s~~----- 317 (374)
......|.|.|++..+++--..|.|++++-......... .... . ....++..++|+|+- ++|....
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~ 108 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNG 108 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCC
Confidence 344566788888766555555699999875432211111 0111 1 135678999999985 2333221
Q ss_pred -----CCCeEEEEEccCC-------eEE-EEec---ccCCceEEEEEeCCCCEEEEEeC
Q 017296 318 -----WDRRVRIYNYRKG-------SAL-AILK---YHHATCNAVSFSSDCKLMASASE 360 (374)
Q Consensus 318 -----~dg~v~iwd~~~~-------~~~-~~~~---~h~~~v~~v~~sp~~~~las~s~ 360 (374)
....|..|.+... +.+ ..+. .|. -..|+|.|||++.++.+.
T Consensus 109 ~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~--GgrI~FgPDG~LYVs~GD 165 (454)
T TIGR03606 109 DKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHN--GGRLVFGPDGKIYYTIGE 165 (454)
T ss_pred CCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcC--CceEEECCCCcEEEEECC
Confidence 1234555655321 111 1121 233 356789999997766553
No 403
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=78.13 E-value=26 Score=31.69 Aligned_cols=64 Identities=16% Similarity=0.228 Sum_probs=43.0
Q ss_pred cCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCC-EEEEE-eCCCeEEEEEccCCeEEEEecc
Q 017296 272 ADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSK-IAATA-GWDRRVRIYNYRKGSALAILKY 338 (374)
Q Consensus 272 ~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~-~~dg~v~iwd~~~~~~~~~~~~ 338 (374)
.|+.-.+|-++..+++...+-.+.. .+.+++++.+.+ +|.+. ..++.+.+||..+|+.+..+.+
T Consensus 265 KdpgteVWv~D~~t~krv~Ri~l~~---~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 265 KDPGTEVWVYDLKTHKRVARIPLEH---PIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp TS-EEEEEEEETTTTEEEEEEEEEE---EESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred cCCceEEEEEECCCCeEEEEEeCCC---ccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 4677778877777777665544432 366899998765 55444 4589999999999999887763
No 404
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=77.35 E-value=27 Score=33.23 Aligned_cols=49 Identities=16% Similarity=0.174 Sum_probs=37.1
Q ss_pred CCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEE
Q 017296 309 DSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMAS 357 (374)
Q Consensus 309 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las 357 (374)
...|||.|+..|-||+||.-.-+.-..+++-...|-.+..+.+|++|..
T Consensus 572 esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ila 620 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILA 620 (776)
T ss_pred cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEE
Confidence 3458999999999999997543333345666678999999999996543
No 405
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=76.82 E-value=83 Score=31.30 Aligned_cols=93 Identities=12% Similarity=0.263 Sum_probs=59.6
Q ss_pred EecCCeEEEEEcCCCCCeEEEEEeee-cCCCCeEEEEE--CCCCCEEEEEeCCCeEEEEEccC-----C----eEEEE--
Q 017296 270 GGADQKIVLYNLDHSTGSCVIKKEIN-LERPGISGTSI--RPDSKIAATAGWDRRVRIYNYRK-----G----SALAI-- 335 (374)
Q Consensus 270 ~s~D~~i~lwd~~~~~~~~~~~~~~~-~~~~~v~~~~~--sp~~~~l~s~~~dg~v~iwd~~~-----~----~~~~~-- 335 (374)
.+....+.+||.+... +..+.. .....|..+.| .|+++.+++-|..+.|.++.-.. . ..+..
T Consensus 47 ~~~~~~LtIWD~~~~~----lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~ 122 (631)
T PF12234_consen 47 DSSRSELTIWDTRSGV----LEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKID 122 (631)
T ss_pred ECCCCEEEEEEcCCcE----EEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEE
Confidence 3345589999986432 222222 12345776654 68999999999999999984421 1 12222
Q ss_pred ecccC-CceEEEEEeCCCCEEEEEeCCCcEEEec
Q 017296 336 LKYHH-ATCNAVSFSSDCKLMASASEDSTVALWE 368 (374)
Q Consensus 336 ~~~h~-~~v~~v~~sp~~~~las~s~D~~v~~W~ 368 (374)
+..|+ .+|....|.++|.+++.++ +.+.|++
T Consensus 123 i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~d 154 (631)
T PF12234_consen 123 ISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFD 154 (631)
T ss_pred eecCCCCCccceeEecCCeEEEEeC--CEEEEEC
Confidence 23454 5788999999998887654 5566654
No 406
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.45 E-value=38 Score=36.10 Aligned_cols=140 Identities=14% Similarity=0.251 Sum_probs=76.7
Q ss_pred ecCCcEEEEeccCCCCceeeeecCccCeEEEEE-ecCC-------CceEEEecCCeEEEEEcCCCC--C-eEEEE--Eee
Q 017296 228 YEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSI-DESC-------NGGISGGADQKIVLYNLDHST--G-SCVIK--KEI 294 (374)
Q Consensus 228 s~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~-~~~~-------~~~~s~s~D~~i~lwd~~~~~--~-~~~~~--~~~ 294 (374)
+.|+.+.+|+..+. ....-+.+-...|..|.. .|+. .+++.-+.--.|.++-+...+ + ...+. ..+
T Consensus 96 TiDn~L~lWny~~~-~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i 174 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESD-NELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKI 174 (1311)
T ss_pred EeCCeEEEEEcCCC-CccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceee
Confidence 45899999999873 334444455555666554 2221 122222222223333221111 0 00011 112
Q ss_pred ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEcc----CC---e-E----------------EEEec-ccCCceEEEEEe
Q 017296 295 NLERPGISGTSIRPDSKIAATAGWDRRVRIYNYR----KG---S-A----------------LAILK-YHHATCNAVSFS 349 (374)
Q Consensus 295 ~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~----~~---~-~----------------~~~~~-~h~~~v~~v~~s 349 (374)
......|.++....+|+++.+ |.|| .+|.+. ++ + + +-.+. .+.++|..++.-
T Consensus 175 ~~dg~~V~~I~~t~nGRIF~~-G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID 251 (1311)
T KOG1900|consen 175 SVDGVSVNCITYTENGRIFFA-GRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID 251 (1311)
T ss_pred ecCCceEEEEEeccCCcEEEe-ecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEec
Confidence 222345777887889998874 5566 556552 11 1 1 11122 456788888886
Q ss_pred CCCCEEEEEeCCCcEEEecCCC
Q 017296 350 SDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 350 p~~~~las~s~D~~v~~W~~~~ 371 (374)
.....|-+=++-++|++|++..
T Consensus 252 ~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 252 NSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cccceeeeeccCceEEEEEccC
Confidence 6666778889999999999964
No 407
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=73.21 E-value=83 Score=29.60 Aligned_cols=30 Identities=20% Similarity=0.506 Sum_probs=24.6
Q ss_pred ceEEEEEeCCCCEEEEEeCCCcEEEecCCC
Q 017296 342 TCNAVSFSSDCKLMASASEDSTVALWELYP 371 (374)
Q Consensus 342 ~v~~v~~sp~~~~las~s~D~~v~~W~~~~ 371 (374)
.|..++.-+..+.|.+...++.|.+|++..
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 388888888888999999999999999864
No 408
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=72.99 E-value=64 Score=28.14 Aligned_cols=106 Identities=14% Similarity=0.058 Sum_probs=59.7
Q ss_pred EEEEecCCCceEEEecCC--eEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEE
Q 017296 257 CLSIDESCNGGISGGADQ--KIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALA 334 (374)
Q Consensus 257 ~~~~~~~~~~~~s~s~D~--~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~ 334 (374)
.+.|..++..+-+.+.-| .|+.+|+++. +......+.. +..--.+++..| ++..-.=.++...+||..+.+.+.
T Consensus 49 GL~~~~~g~LyESTG~yG~S~l~~~d~~tg--~~~~~~~l~~-~~FgEGit~~~d-~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLYGQSSLRKVDLETG--KVLQSVPLPP-RYFGEGITILGD-KLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp EEEEEETTEEEEEECSTTEEEEEEEETTTS--SEEEEEE-TT-T--EEEEEEETT-EEEEEESSSSEEEEEETTTTEEEE
T ss_pred cEEecCCCEEEEeCCCCCcEEEEEEECCCC--cEEEEEECCc-cccceeEEEECC-EEEEEEecCCeEEEEccccceEEE
Confidence 355544444455666655 7888887643 3332222221 222334555544 444445568999999999999988
Q ss_pred EecccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 335 ILKYHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 335 ~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
++.. ...-+.+. .||+.|+.+.....++++|-
T Consensus 125 ~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP 156 (264)
T PF05096_consen 125 TFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDP 156 (264)
T ss_dssp EEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-T
T ss_pred EEec-CCcceEEE--cCCCEEEEECCccceEEECC
Confidence 8763 44567666 47776665544555666553
No 409
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=72.33 E-value=33 Score=30.45 Aligned_cols=69 Identities=17% Similarity=0.188 Sum_probs=47.8
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEcc------CCeEE-EEecc-----cCCceEEEEEeCCCC------------EEE
Q 017296 301 ISGTSIRPDSKIAATAGWDRRVRIYNYR------KGSAL-AILKY-----HHATCNAVSFSSDCK------------LMA 356 (374)
Q Consensus 301 v~~~~~sp~~~~l~s~~~dg~v~iwd~~------~~~~~-~~~~~-----h~~~v~~v~~sp~~~------------~la 356 (374)
-+.++|+|.+.+-++...-++..+||.. .++.+ -++.. .+...+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4678999999888888888999999986 22222 23332 234567777764222 256
Q ss_pred EEeCCCcEEEecC
Q 017296 357 SASEDSTVALWEL 369 (374)
Q Consensus 357 s~s~D~~v~~W~~ 369 (374)
.+++||+|.-|+-
T Consensus 105 f~tEdGTisaW~p 117 (336)
T TIGR03118 105 FVTEDGTLSGWAP 117 (336)
T ss_pred EEeCCceEEeecC
Confidence 7899999999984
No 410
>PRK13684 Ycf48-like protein; Provisional
Probab=72.03 E-value=78 Score=28.76 Aligned_cols=107 Identities=7% Similarity=0.021 Sum_probs=57.2
Q ss_pred cCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeE
Q 017296 253 EPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSA 332 (374)
Q Consensus 253 ~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~ 332 (374)
..+..+.+.+++.. +..+..|.+..= .+......... .......+.++.+.|+++.++.| ..|.+++=....++.
T Consensus 173 g~~~~i~~~~~g~~-v~~g~~G~i~~s-~~~gg~tW~~~--~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 173 GVVRNLRRSPDGKY-VAVSSRGNFYST-WEPGQTAWTPH--QRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred ceEEEEEECCCCeE-EEEeCCceEEEE-cCCCCCeEEEe--eCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence 35667777776544 344445544321 11111122211 12233468889999999877654 578775322344443
Q ss_pred EEEeccc----CCceEEEEEeCCCCEEEEEeCCCcEE
Q 017296 333 LAILKYH----HATCNAVSFSSDCKLMASASEDSTVA 365 (374)
Q Consensus 333 ~~~~~~h----~~~v~~v~~sp~~~~las~s~D~~v~ 365 (374)
......+ ...+..+++.|+++.++. +.+|.+.
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~ 283 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLL 283 (334)
T ss_pred cccccCCccccccceeeEEEcCCCCEEEE-cCCCeEE
Confidence 3322222 234778899998876654 4566554
No 411
>PHA02713 hypothetical protein; Provisional
Probab=70.20 E-value=1.2e+02 Score=29.99 Aligned_cols=54 Identities=11% Similarity=0.066 Sum_probs=31.9
Q ss_pred eEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCC--eEEEEEccCCe
Q 017296 275 KIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDR--RVRIYNYRKGS 331 (374)
Q Consensus 275 ~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg--~v~iwd~~~~~ 331 (374)
.+..||.+.. .++.....+...+.....+++ ++++.+.||.|+ ++..||..+.+
T Consensus 481 ~ve~Ydp~~~-~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 481 CIFRYNTNTY-NGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred eEEEecCCCC-CCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence 3567776541 234433344434333333444 678889999998 77778776654
No 412
>PRK13616 lipoprotein LpqB; Provisional
Probab=69.89 E-value=1.2e+02 Score=30.10 Aligned_cols=112 Identities=14% Similarity=0.074 Sum_probs=59.1
Q ss_pred eEEEEEecCCCceEEEecCCe-EEEEEcCCCCCeEE-EEE---eee-cCCCCeEEEEECCCCCEEEEEeCCCeEEE---E
Q 017296 255 VLCLSIDESCNGGISGGADQK-IVLYNLDHSTGSCV-IKK---EIN-LERPGISGTSIRPDSKIAATAGWDRRVRI---Y 325 (374)
Q Consensus 255 v~~~~~~~~~~~~~s~s~D~~-i~lwd~~~~~~~~~-~~~---~~~-~~~~~v~~~~~sp~~~~l~s~~~dg~v~i---w 325 (374)
...-.|++++..+++.+..+. +++.+-.. ++... ... +.. .....|.++.|||||+.||.-. ++.|.+ -
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~-~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vv 476 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPA-TGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVE 476 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCC-CceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEE
Confidence 667778888777766653322 22222111 11110 000 000 1134699999999999887654 577766 3
Q ss_pred EccCCe-EE---EEec-ccCCceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 326 NYRKGS-AL---AILK-YHHATCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 326 d~~~~~-~~---~~~~-~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
....|+ .+ ..+. +-...+.+++|.+++.++ .+..++...+|.+
T Consensus 477 r~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 477 QTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred eCCCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEE
Confidence 333443 11 0121 122346789999999855 3344454555644
No 413
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=69.77 E-value=14 Score=19.97 Aligned_cols=24 Identities=13% Similarity=0.086 Sum_probs=19.2
Q ss_pred EEEEEeCCCeEEEEEccCCeEEEE
Q 017296 312 IAATAGWDRRVRIYNYRKGSALAI 335 (374)
Q Consensus 312 ~l~s~~~dg~v~iwd~~~~~~~~~ 335 (374)
.+..++.+|.+..+|.++|+.+..
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEE
Confidence 466678899999999988887654
No 414
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=69.30 E-value=19 Score=25.47 Aligned_cols=52 Identities=17% Similarity=0.153 Sum_probs=30.2
Q ss_pred EEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEE--eCCCcEEEe
Q 017296 315 TAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASA--SEDSTVALW 367 (374)
Q Consensus 315 s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~--s~D~~v~~W 367 (374)
.+..+|.+..||..+++.- ++...-...+.|+++||+.+|+.+ +.-...|.|
T Consensus 32 e~~~~GRll~ydp~t~~~~-vl~~~L~fpNGVals~d~~~vlv~Et~~~Ri~ryw 85 (89)
T PF03088_consen 32 EGRPTGRLLRYDPSTKETT-VLLDGLYFPNGVALSPDESFVLVAETGRYRILRYW 85 (89)
T ss_dssp HT---EEEEEEETTTTEEE-EEEEEESSEEEEEE-TTSSEEEEEEGGGTEEEEEE
T ss_pred cCCCCcCEEEEECCCCeEE-EehhCCCccCeEEEcCCCCEEEEEeccCceEEEEE
Confidence 3445778888999887643 333333467889999999965543 334444444
No 415
>PRK10115 protease 2; Provisional
Probab=69.10 E-value=33 Score=34.70 Aligned_cols=70 Identities=20% Similarity=0.181 Sum_probs=43.8
Q ss_pred eEEEEECCCCCEEEEEeC-C----CeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCC------CcEEEecC
Q 017296 301 ISGTSIRPDSKIAATAGW-D----RRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASED------STVALWEL 369 (374)
Q Consensus 301 v~~~~~sp~~~~l~s~~~-d----g~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D------~~v~~W~~ 369 (374)
+..+.+|||+++|+-+-. + -.+++-|+.+++.+...-.... ..++|++|++.|+....| ..|+.+++
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~l 206 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTI 206 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEEC
Confidence 556788999998874432 2 2578888887764422211222 468999999866655432 35666676
Q ss_pred CCC
Q 017296 370 YPP 372 (374)
Q Consensus 370 ~~~ 372 (374)
..+
T Consensus 207 gt~ 209 (686)
T PRK10115 207 GTP 209 (686)
T ss_pred CCC
Confidence 544
No 416
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.67 E-value=56 Score=31.35 Aligned_cols=80 Identities=15% Similarity=0.160 Sum_probs=47.0
Q ss_pred CeEEEEEecCCCceEEEecCCeEEEEE-----cCC--CCCe----EEEEE---e--eecCCCCeEEEEECCCC---CEEE
Q 017296 254 PVLCLSIDESCNGGISGGADQKIVLYN-----LDH--STGS----CVIKK---E--INLERPGISGTSIRPDS---KIAA 314 (374)
Q Consensus 254 ~v~~~~~~~~~~~~~s~s~D~~i~lwd-----~~~--~~~~----~~~~~---~--~~~~~~~v~~~~~sp~~---~~l~ 314 (374)
.|..+..++.|-.++-.|.+|.+..+= -+. ..++ |.... + .....-.+..++|+|+. ..+.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 455666678887778888888666532 110 1121 11000 0 01122345678899975 4566
Q ss_pred EEeCCCeEEEEEccCCeEE
Q 017296 315 TAGWDRRVRIYNYRKGSAL 333 (374)
Q Consensus 315 s~~~dg~v~iwd~~~~~~~ 333 (374)
.-..|.+||+||+.....+
T Consensus 185 iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred EEecCcEEEEEecCCcchh
Confidence 6778999999999765444
No 417
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=68.52 E-value=14 Score=19.48 Aligned_cols=25 Identities=20% Similarity=0.444 Sum_probs=16.7
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEE
Q 017296 301 ISGTSIRPDSKIAATAGWDRRVRIY 325 (374)
Q Consensus 301 v~~~~~sp~~~~l~s~~~dg~v~iw 325 (374)
...+++.++|.++++=.....|++|
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 3456777777777766666676654
No 418
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=68.27 E-value=1.4e+02 Score=30.51 Aligned_cols=76 Identities=17% Similarity=0.157 Sum_probs=48.0
Q ss_pred CeEEEEEecCCCceEEEecCCeEEEEEcCC----------CCC--eEEEEE--e---eecCCCCeEEEEECCC---CCEE
Q 017296 254 PVLCLSIDESCNGGISGGADQKIVLYNLDH----------STG--SCVIKK--E---INLERPGISGTSIRPD---SKIA 313 (374)
Q Consensus 254 ~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~----------~~~--~~~~~~--~---~~~~~~~v~~~~~sp~---~~~l 313 (374)
.|..+.+++.+..++-.|..|-+.+ .+.. +.. .|.... + .......|..+.|+|. +..|
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 5777788899988888777664444 2321 111 111110 0 0122345788999986 5788
Q ss_pred EEEeCCCeEEEEEccCC
Q 017296 314 ATAGWDRRVRIYNYRKG 330 (374)
Q Consensus 314 ~s~~~dg~v~iwd~~~~ 330 (374)
+.=..|+++|+||+...
T Consensus 165 ~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEecCCEEEEEecCCC
Confidence 88889999999999753
No 419
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=66.50 E-value=29 Score=29.06 Aligned_cols=47 Identities=11% Similarity=0.185 Sum_probs=33.8
Q ss_pred CCEEEEEeCCCeEEEEEccC--CeEEEEecccCCceEEEEEeCCCCEEEEE
Q 017296 310 SKIAATAGWDRRVRIYNYRK--GSALAILKYHHATCNAVSFSSDCKLMASA 358 (374)
Q Consensus 310 ~~~l~s~~~dg~v~iwd~~~--~~~~~~~~~h~~~v~~v~~sp~~~~las~ 358 (374)
+.+++ +....+|.+|++.. .+.+.++..- +.|..++++..|.+|+|-
T Consensus 29 d~Lfv-a~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTl 77 (215)
T PF14761_consen 29 DALFV-AASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTL 77 (215)
T ss_pred ceEEE-EcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEE
Confidence 33444 35577899999973 3445555533 789999999999999984
No 420
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.36 E-value=36 Score=30.00 Aligned_cols=72 Identities=8% Similarity=0.180 Sum_probs=54.1
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecc-cCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 299 PGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKY-HHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 299 ~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
..+++++|+|+.+.+.+......--||=..+|+.+.++.- .....-.+.+.-+|++.++--.|..+.+..++
T Consensus 86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred ccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEc
Confidence 4588999999999998888777777786678888876541 12334456788888888888888888877654
No 421
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=65.64 E-value=1.2e+02 Score=28.37 Aligned_cols=98 Identities=12% Similarity=0.030 Sum_probs=50.9
Q ss_pred CcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEec-----------CCeEEEEEcCCCCCeEEEEEeeecCCC
Q 017296 231 GSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGA-----------DQKIVLYNLDHSTGSCVIKKEINLERP 299 (374)
Q Consensus 231 g~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~-----------D~~i~lwd~~~~~~~~~~~~~~~~~~~ 299 (374)
..|+++|+++. ..+... ........+.|.+++..++-... ...|.+|.+......-.+..+......
T Consensus 150 ~~l~v~Dl~tg-~~l~d~-i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~ 227 (414)
T PF02897_consen 150 YTLRVFDLETG-KFLPDG-IENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPF 227 (414)
T ss_dssp EEEEEEETTTT-EEEEEE-EEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTT
T ss_pred EEEEEEECCCC-cCcCCc-ccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCc
Confidence 45999999864 222211 01111223788777776654433 234788887654333122222221211
Q ss_pred CeEEEEECCCCCEEEEEe-CC---CeEEEEEccCC
Q 017296 300 GISGTSIRPDSKIAATAG-WD---RRVRIYNYRKG 330 (374)
Q Consensus 300 ~v~~~~~sp~~~~l~s~~-~d---g~v~iwd~~~~ 330 (374)
....+..++|+++|+... .. ..+.+-|+..+
T Consensus 228 ~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 228 WFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp SEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred EEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 256788999999876433 22 34677777653
No 422
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.59 E-value=84 Score=27.75 Aligned_cols=55 Identities=13% Similarity=0.071 Sum_probs=36.8
Q ss_pred EecCCCceEEEecC-----CeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEe
Q 017296 260 IDESCNGGISGGAD-----QKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAG 317 (374)
Q Consensus 260 ~~~~~~~~~s~s~D-----~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~ 317 (374)
|++++..|+..-.| |-|-+||.+.. .....++..+.-+--.+.+.+||++|+.+.
T Consensus 121 fs~dG~~LYATEndfd~~rGViGvYd~r~~---fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 121 FSPDGRLLYATENDFDPNRGVIGVYDAREG---FQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred cCCCCcEEEeecCCCCCCCceEEEEecccc---cceecccccCCcCcceeEEecCCcEEEEeC
Confidence 57777777655443 68889988632 223345555555666789999999988663
No 423
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=65.40 E-value=1.8e+02 Score=30.41 Aligned_cols=99 Identities=11% Similarity=0.053 Sum_probs=63.1
Q ss_pred EEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEE
Q 017296 226 AGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTS 305 (374)
Q Consensus 226 ~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~ 305 (374)
.++-+..|++|++.+ +..+..-..|..++..+.+.-.+..++.|..-+++.+-..+...+.... .....+..+.+++.
T Consensus 843 lA~In~~vrLye~t~-~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~e-vArD~~p~Wmtave 920 (1096)
T KOG1897|consen 843 LAGINQSVRLYEWTT-ERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEE-VARDYNPNWMTAVE 920 (1096)
T ss_pred EEecCcEEEEEEccc-cceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEE-eehhhCccceeeEE
Confidence 455677999999975 3345555567888988888877777888888888888766655443321 11223334566666
Q ss_pred ECCCCCEEEEEeCCCeEEEEEc
Q 017296 306 IRPDSKIAATAGWDRRVRIYNY 327 (374)
Q Consensus 306 ~sp~~~~l~s~~~dg~v~iwd~ 327 (374)
+=.+..+ +-+..+|.+.+-..
T Consensus 921 il~~d~y-lgae~~gNlf~v~~ 941 (1096)
T KOG1897|consen 921 ILDDDTY-LGAENSGNLFTVRK 941 (1096)
T ss_pred EecCceE-EeecccccEEEEEe
Confidence 6555444 44566777666533
No 424
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=63.92 E-value=1.6e+02 Score=29.20 Aligned_cols=86 Identities=20% Similarity=0.242 Sum_probs=43.4
Q ss_pred eEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCC-----eEEEEEccCCeEEE--EecccCCceEEEE
Q 017296 275 KIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDR-----RVRIYNYRKGSALA--ILKYHHATCNAVS 347 (374)
Q Consensus 275 ~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg-----~v~iwd~~~~~~~~--~~~~h~~~v~~v~ 347 (374)
++..||-. +..+.....+...+..... + .-++++.+.||.|+ +|..+|..+.+=.. .+......+..++
T Consensus 445 sve~YDP~--t~~W~~~~~M~~~R~~~g~-a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~ 520 (571)
T KOG4441|consen 445 SVECYDPE--TNTWTLIAPMNTRRSGFGV-A-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVV 520 (571)
T ss_pred eEEEEcCC--CCceeecCCcccccccceE-E-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEE
Confidence 34555443 3344444444433332222 2 23567788888776 37778776544211 1221222222222
Q ss_pred EeCCCCEEEEEeCCCcEEE
Q 017296 348 FSSDCKLMASASEDSTVAL 366 (374)
Q Consensus 348 ~sp~~~~las~s~D~~v~~ 366 (374)
-+++..+.|+.|+.-++
T Consensus 521 --~~~~ly~vGG~~~~~~l 537 (571)
T KOG4441|consen 521 --LGGKLYAVGGFDGNNNL 537 (571)
T ss_pred --ECCEEEEEecccCcccc
Confidence 26778888888876543
No 425
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=63.27 E-value=97 Score=26.55 Aligned_cols=70 Identities=17% Similarity=0.162 Sum_probs=42.3
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccC-Cc-------eEEEEEeCCCC-EEEEEeCCCcEEEecCC
Q 017296 300 GISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHH-AT-------CNAVSFSSDCK-LMASASEDSTVALWELY 370 (374)
Q Consensus 300 ~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~-~~-------v~~v~~sp~~~-~las~s~D~~v~~W~~~ 370 (374)
+...-..+|+|++.+-...|-.- .+....+....-+.+|. +. -+.++|..|.+ +...-|.+-.|.-|+.+
T Consensus 110 R~NDgkvdP~Gryy~GtMad~~~-~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd 188 (310)
T KOG4499|consen 110 RLNDGKVDPDGRYYGGTMADFGD-DLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYD 188 (310)
T ss_pred ccccCccCCCCceeeeeeccccc-cccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeeecC
Confidence 34556788999997644444332 23333344444444454 22 25578988777 44566888889889854
No 426
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=63.27 E-value=21 Score=20.35 Aligned_cols=26 Identities=12% Similarity=0.040 Sum_probs=21.3
Q ss_pred EEEEeCCCeEEEEEccCCeEEEEecc
Q 017296 313 AATAGWDRRVRIYNYRKGSALAILKY 338 (374)
Q Consensus 313 l~s~~~dg~v~iwd~~~~~~~~~~~~ 338 (374)
|..++.||.+.-.|.++|+.+..++.
T Consensus 3 v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 3 VYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 45568999999999999999877653
No 427
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=62.96 E-value=36 Score=28.81 Aligned_cols=59 Identities=15% Similarity=0.211 Sum_probs=34.6
Q ss_pred EEEEEecCCcEEEEeccCCCCceee------ee-------cCccCeEEEEEecCCCceEEEecCCeEEEEEcC
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTA------MK-------VHLEPVLCLSIDESCNGGISGGADQKIVLYNLD 282 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~------~~-------~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~ 282 (374)
++++-+.+|.+.+||+++....+.. +. .....|..+.++.+|.-+++-+ +|....|+.+
T Consensus 24 ~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 24 YLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 4677788999999999864322211 11 2344566666665555444443 3555666553
No 428
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.42 E-value=53 Score=34.63 Aligned_cols=114 Identities=13% Similarity=0.070 Sum_probs=66.2
Q ss_pred CeEEEEEecC--CCceEEEecCCeEEEEEcCCCCCeE-----EEEEeeecC--CCCeEEEEECCCCCE-EEEEeCCCeEE
Q 017296 254 PVLCLSIDES--CNGGISGGADQKIVLYNLDHSTGSC-----VIKKEINLE--RPGISGTSIRPDSKI-AATAGWDRRVR 323 (374)
Q Consensus 254 ~v~~~~~~~~--~~~~~s~s~D~~i~lwd~~~~~~~~-----~~~~~~~~~--~~~v~~~~~sp~~~~-l~s~~~dg~v~ 323 (374)
++..+...++ ...++..+.+-.|..+|++.-.... .+....... ......+.|.|.-.. .|....|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 4555544444 2334566666788999986421110 010000000 112345667776443 35556789998
Q ss_pred EEEccCCeEE-EEecccCCceEEEEEeCCCCEEEEEeCCCcEEEec
Q 017296 324 IYNYRKGSAL-AILKYHHATCNAVSFSSDCKLMASASEDSTVALWE 368 (374)
Q Consensus 324 iwd~~~~~~~-~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~ 368 (374)
+.-+....+. ..+. -...++++.|+|.|+.++.|-..|++.-+.
T Consensus 182 V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~ 226 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYE 226 (1405)
T ss_pred hhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEee
Confidence 8766432221 1222 346789999999999999999999987664
No 429
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=61.71 E-value=1.1e+02 Score=26.55 Aligned_cols=108 Identities=17% Similarity=0.078 Sum_probs=58.4
Q ss_pred CeEEEEEecCCCceEEEecCCeEEEEE-cCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEe---CCCeEEEEEcc-
Q 017296 254 PVLCLSIDESCNGGISGGADQKIVLYN-LDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAG---WDRRVRIYNYR- 328 (374)
Q Consensus 254 ~v~~~~~~~~~~~~~s~s~D~~i~lwd-~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~---~dg~v~iwd~~- 328 (374)
.+..-+|++++........+...+++. ....+...... ........|.++.+||||.-+|.-. .++.|.+=-+.
T Consensus 67 ~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v-~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r 145 (253)
T PF10647_consen 67 SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEV-DWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVR 145 (253)
T ss_pred ccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEe-cccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEe
Confidence 566667787754333444455556553 11122111111 1111111699999999999765443 35677665442
Q ss_pred --CC--eE----EEEecccCCceEEEEEeCCCCEEEEE-eCCC
Q 017296 329 --KG--SA----LAILKYHHATCNAVSFSSDCKLMASA-SEDS 362 (374)
Q Consensus 329 --~~--~~----~~~~~~h~~~v~~v~~sp~~~~las~-s~D~ 362 (374)
.+ .. +.........+..++|.+++.+++.+ ..+.
T Consensus 146 ~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~ 188 (253)
T PF10647_consen 146 DGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGG 188 (253)
T ss_pred CCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCC
Confidence 22 11 11222234578999999999976655 3444
No 430
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=61.71 E-value=1.1e+02 Score=26.55 Aligned_cols=144 Identities=17% Similarity=0.197 Sum_probs=73.5
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecC-ccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEE----EEee---
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVH-LEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVI----KKEI--- 294 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~----~~~~--- 294 (374)
.+++....+.|...++. +..+..+... ....-.+++-.++..+++.-.++.+.+.+++..+..... ...+
T Consensus 36 LfaV~d~~~~i~els~~--G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~ 113 (248)
T PF06977_consen 36 LFAVQDEPGEIYELSLD--GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFP 113 (248)
T ss_dssp EEEEETTTTEEEEEETT----EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S
T ss_pred EEEEECCCCEEEEEcCC--CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccc
Confidence 34556666777666653 3334433322 345666777666655555556899999988543321111 1111
Q ss_pred ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccC---CeEEEE--e------cccCCceEEEEEeCC-CCEEEEEeCCC
Q 017296 295 NLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRK---GSALAI--L------KYHHATCNAVSFSSD-CKLMASASEDS 362 (374)
Q Consensus 295 ~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~---~~~~~~--~------~~h~~~v~~v~~sp~-~~~las~s~D~ 362 (374)
..+..++-.+++.|.++.+..+-+....+++.+.. ...+.. . ......+++++++|. |.+++-+.+..
T Consensus 114 ~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~ 193 (248)
T PF06977_consen 114 NKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESR 193 (248)
T ss_dssp ---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTT
T ss_pred cCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCC
Confidence 12345688999999877777788888888887754 222211 1 112346788889885 44566555555
Q ss_pred cEEEec
Q 017296 363 TVALWE 368 (374)
Q Consensus 363 ~v~~W~ 368 (374)
.|-..|
T Consensus 194 ~l~~~d 199 (248)
T PF06977_consen 194 LLLELD 199 (248)
T ss_dssp EEEEE-
T ss_pred eEEEEC
Confidence 555444
No 431
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=60.59 E-value=1e+02 Score=29.10 Aligned_cols=107 Identities=9% Similarity=0.015 Sum_probs=60.1
Q ss_pred CceEEEecCCeEEEEEcCCCCCeEEE--EEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCc
Q 017296 265 NGGISGGADQKIVLYNLDHSTGSCVI--KKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHAT 342 (374)
Q Consensus 265 ~~~~s~s~D~~i~lwd~~~~~~~~~~--~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~ 342 (374)
..++..+.||-|.-|=.-..++...+ ....+.....+.-+.-..+.+-+++-...|+..++.....+.+ ..+.-...
T Consensus 281 ~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~l-L~~~~~~~ 359 (733)
T COG4590 281 FSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLL-LFERAYQA 359 (733)
T ss_pred eeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcce-ehhhhhcC
Confidence 34677888998888843222222111 1111111111222222224455777777888887765443333 22222346
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEecCCCCC
Q 017296 343 CNAVSFSSDCKLMASASEDSTVALWELYPPH 373 (374)
Q Consensus 343 v~~v~~sp~~~~las~s~D~~v~~W~~~~~~ 373 (374)
+..+++||++.+|++-. .|.++++.++.++
T Consensus 360 ~~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr~ 389 (733)
T COG4590 360 PQLVAMSPNQAYLLSED-QGKIRLAQLENRN 389 (733)
T ss_pred cceeeeCcccchheeec-CCceEEEEecCCC
Confidence 67789999999988754 5678888887765
No 432
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=59.61 E-value=1.7e+02 Score=28.95 Aligned_cols=127 Identities=16% Similarity=0.144 Sum_probs=62.4
Q ss_pred CcEEEEeccCCC-CceeeeecCccCeEEEEEecCCCceEEEecC------CeEEEEEcCCCCCeEEEEEeeecCCCCeEE
Q 017296 231 GSILVWDIRNPG-IPLTAMKVHLEPVLCLSIDESCNGGISGGAD------QKIVLYNLDHSTGSCVIKKEINLERPGISG 303 (374)
Q Consensus 231 g~i~iwdl~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D------~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~ 303 (374)
..++.||..+.. .....+. +...-.++++-+. ...++||.| .++..||.... ++.....+...+.....
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~~~-~lYv~GG~~~~~~~l~~ve~YD~~~~--~W~~~a~M~~~R~~~~v 376 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMP-SPRCRVGVAVLNG-KLYVVGGYDSGSDRLSSVERYDPRTN--QWTPVAPMNTKRSDFGV 376 (571)
T ss_pred ceeEEecCCcCcEeecCCCC-cccccccEEEECC-EEEEEccccCCCcccceEEEecCCCC--ceeccCCccCcccccee
Confidence 468888886531 1111111 2223334444332 345778877 35566665443 33333333333322222
Q ss_pred EEECCCCCEEEEEeCCCe-----EEEEEccCCeEEEEecccCCceEEEE-EeCCCCEEEEEeCCCcE
Q 017296 304 TSIRPDSKIAATAGWDRR-----VRIYNYRKGSALAILKYHHATCNAVS-FSSDCKLMASASEDSTV 364 (374)
Q Consensus 304 ~~~sp~~~~l~s~~~dg~-----v~iwd~~~~~~~~~~~~h~~~v~~v~-~sp~~~~las~s~D~~v 364 (374)
. .-+|.+.|.||.||. |-.||..+.+- .............+ -.-+|+..+.||.|+.-
T Consensus 377 ~--~l~g~iYavGG~dg~~~l~svE~YDp~~~~W-~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~ 440 (571)
T KOG4441|consen 377 A--VLDGKLYAVGGFDGEKSLNSVECYDPVTNKW-TPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSS 440 (571)
T ss_pred E--EECCEEEEEeccccccccccEEEecCCCCcc-cccCCCCcceeeeEEEEECCEEEEEcCcCCCc
Confidence 2 235778899999974 56666654331 11111211222211 22388888888877655
No 433
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=58.80 E-value=1.2e+02 Score=26.25 Aligned_cols=102 Identities=12% Similarity=0.185 Sum_probs=56.4
Q ss_pred CCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEe------
Q 017296 263 SCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAIL------ 336 (374)
Q Consensus 263 ~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~------ 336 (374)
.+..++.|..+| +.++++..... .... . +...|..+.+-|+-+.++.=+ |+++.++++.........
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~-~~~i--~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSK-PTRI--L--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP 78 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCcc-ceeE--e--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccc
Confidence 445678888888 88888722211 1111 1 122388888888766665443 699999998764333210
Q ss_pred --------cccCCceEEEE--EeCCC-CEEEEEeCCCcEEEecCCCC
Q 017296 337 --------KYHHATCNAVS--FSSDC-KLMASASEDSTVALWELYPP 372 (374)
Q Consensus 337 --------~~h~~~v~~v~--~sp~~-~~las~s~D~~v~~W~~~~~ 372 (374)
......+...+ =...+ ..|+.+ ....|.+|.+..+
T Consensus 79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~ 124 (275)
T PF00780_consen 79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDP 124 (275)
T ss_pred ccccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECC
Confidence 01122344433 11233 345544 3558888887653
No 434
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.58 E-value=2e+02 Score=27.37 Aligned_cols=102 Identities=11% Similarity=0.113 Sum_probs=65.5
Q ss_pred CccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCC
Q 017296 251 HLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKG 330 (374)
Q Consensus 251 h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~ 330 (374)
..++|.++.|+++...+|.--.|.+|.+++....+.+.....+-+.....|...+|+... -+|--. +.-+.+|.+...
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~-e~A~i~-~~G~e~y~v~pe 142 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSST-EIAFIT-DQGIEFYQVLPE 142 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCe-eEEEEe-cCCeEEEEEchh
Confidence 456999999999999899999999999999854332211111111222346777787653 344333 445667766443
Q ss_pred -eEEEEecccCCceEEEEEeCCCCE
Q 017296 331 -SALAILKYHHATCNAVSFSSDCKL 354 (374)
Q Consensus 331 -~~~~~~~~h~~~v~~v~~sp~~~~ 354 (374)
+.+...+.|...|+.-+|.++-+.
T Consensus 143 krslRlVks~~~nvnWy~yc~et~v 167 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCPETAV 167 (657)
T ss_pred hhhhhhhhhcccCccEEEEccccce
Confidence 334445678888888899988773
No 435
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=54.00 E-value=2.3e+02 Score=27.92 Aligned_cols=120 Identities=13% Similarity=0.104 Sum_probs=67.5
Q ss_pred cCccCeEEEEEecC----CCceEEEecCCeEEEEEcCCC---CCeEEE--EEeeecCCCC-eEEEEECCCCCEEEEEeCC
Q 017296 250 VHLEPVLCLSIDES----CNGGISGGADQKIVLYNLDHS---TGSCVI--KKEINLERPG-ISGTSIRPDSKIAATAGWD 319 (374)
Q Consensus 250 ~h~~~v~~~~~~~~----~~~~~s~s~D~~i~lwd~~~~---~~~~~~--~~~~~~~~~~-v~~~~~sp~~~~l~s~~~d 319 (374)
|..+-|..+++.|- ...+++--....|.+|-+... +.+... .-++...-.- -....|||...+++.=...
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~ 133 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTAR 133 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecC
Confidence 33455666666433 335566667788999988532 122221 1222211110 1246789988877644433
Q ss_pred CeEEEEEccC-CeEEEEecccCCceEEEEEeCCCCEEEEE-eCCCcEEEecC
Q 017296 320 RRVRIYNYRK-GSALAILKYHHATCNAVSFSSDCKLMASA-SEDSTVALWEL 369 (374)
Q Consensus 320 g~v~iwd~~~-~~~~~~~~~h~~~v~~v~~sp~~~~las~-s~D~~v~~W~~ 369 (374)
..--++++.. ..+++.--...+.|.|..|.+||+.|+.| +.-=.-++||-
T Consensus 134 dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 134 DVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred ceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 3333566643 34444333456789999999999976654 44445567764
No 436
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=52.08 E-value=18 Score=36.83 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=20.0
Q ss_pred ECCCCCEEEEEeCCCeEEEEEc
Q 017296 306 IRPDSKIAATAGWDRRVRIYNY 327 (374)
Q Consensus 306 ~sp~~~~l~s~~~dg~v~iwd~ 327 (374)
+||||+.+|.++.||.+++|.+
T Consensus 243 lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 243 LSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred eCCCCcEEEEeecCCccceeee
Confidence 7899999999999999999866
No 437
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=49.85 E-value=45 Score=33.42 Aligned_cols=33 Identities=12% Similarity=0.138 Sum_probs=27.5
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEEccCCe
Q 017296 299 PGISGTSIRPDSKIAATAGWDRRVRIYNYRKGS 331 (374)
Q Consensus 299 ~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~ 331 (374)
..+.++.-+|.++-++++..||.|.+|+....+
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~ 47 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRR 47 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccc
Confidence 346778888999999999999999999985443
No 438
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=49.78 E-value=33 Score=34.30 Aligned_cols=66 Identities=18% Similarity=0.145 Sum_probs=41.0
Q ss_pred CeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 017296 254 PVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYN 326 (374)
Q Consensus 254 ~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd 326 (374)
-++.+.-+|.++.+++++.||+|+++++-..+.+-.. + ....-..+.|...| ++++..|+++.-|.
T Consensus 16 ~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~--~---~~~p~~nlv~tnhg--l~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 16 FTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKIC--E---EAKPKENLVFTNHG--LVTATSDRRALAWK 81 (1636)
T ss_pred eeeeeeecCCCceEEEEecCCcEEEEeecccchhhhh--h---hcCCccceeeeccc--eEEEeccchhheee
Confidence 3445556788899999999999999998543221110 0 01112345566555 55666788877774
No 439
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.30 E-value=2.4e+02 Score=26.83 Aligned_cols=70 Identities=17% Similarity=0.211 Sum_probs=45.6
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEE----ecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 299 PGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAI----LKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 299 ~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~----~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
+.|.++.||||.+.+|.--.|.+|.+++....+.... .+.-...|...-|+.+ +-+|--+ |.-+.++...
T Consensus 67 G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~-~~G~e~y~v~ 140 (657)
T KOG2377|consen 67 GEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFIT-DQGIEFYQVL 140 (657)
T ss_pred CceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEe-cCCeEEEEEc
Confidence 4699999999999999999999999999854333221 1222345777777655 4444433 3335555443
No 440
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=48.30 E-value=1.1e+02 Score=27.84 Aligned_cols=57 Identities=12% Similarity=0.078 Sum_probs=38.3
Q ss_pred CCCEEEEEeCCCeEEEEEccCCeEEE---E-ecccCCceEEEEEeCCCCEEEEEeCCCcEE
Q 017296 309 DSKIAATAGWDRRVRIYNYRKGSALA---I-LKYHHATCNAVSFSSDCKLMASASEDSTVA 365 (374)
Q Consensus 309 ~~~~l~s~~~dg~v~iwd~~~~~~~~---~-~~~h~~~v~~v~~sp~~~~las~s~D~~v~ 365 (374)
.++++++.-..+.|....+.++..+. . +......+..+++.|||.+.++...+|.|.
T Consensus 270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 45566666556788888886553322 2 223445899999999999888888888764
No 441
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=48.05 E-value=1.6e+02 Score=27.97 Aligned_cols=102 Identities=17% Similarity=0.203 Sum_probs=58.8
Q ss_pred EEEEEecCCcEEEE-eccCCCCcee----eeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecC
Q 017296 223 NVLAGYEDGSILVW-DIRNPGIPLT----AMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLE 297 (374)
Q Consensus 223 ~~~~gs~dg~i~iw-dl~~~~~~~~----~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~ 297 (374)
.++.++.||.|.-| |.+..+.+.. .++-...++..+.-+...+.+++-...|++.++.-.. .+..+ .+...
T Consensus 282 SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~--~~~lL-~~~~~- 357 (733)
T COG4590 282 SLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTS--EKLLL-FERAY- 357 (733)
T ss_pred eEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeeccc--Cccee-hhhhh-
Confidence 47889999999987 4444333221 1122223444444444455667777777777664311 11111 11111
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEEccCC
Q 017296 298 RPGISGTSIRPDSKIAATAGWDRRVRIYNYRKG 330 (374)
Q Consensus 298 ~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~ 330 (374)
....-+++||++.++++- ..|+|+++.+++.
T Consensus 358 -~~~~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr 388 (733)
T COG4590 358 -QAPQLVAMSPNQAYLLSE-DQGKIRLAQLENR 388 (733)
T ss_pred -cCcceeeeCcccchheee-cCCceEEEEecCC
Confidence 245568999999998854 4688999987653
No 442
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=47.24 E-value=2.1e+02 Score=25.54 Aligned_cols=129 Identities=12% Similarity=0.084 Sum_probs=77.6
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCc-cCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCe
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHL-EPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERPGI 301 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v 301 (374)
.+..+-.+..++++|+.++..|...-...+ .--.++.++++ +...+..|....+.|+...+. ..+...........
T Consensus 98 yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn--~aYVadlddgfLivdvsdpss-P~lagrya~~~~d~ 174 (370)
T COG5276 98 YVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGN--YAYVADLDDGFLIVDVSDPSS-PQLAGRYALPGGDT 174 (370)
T ss_pred EEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCC--EEEEeeccCcEEEEECCCCCC-ceeeeeeccCCCCc
Confidence 355666788899999988877654433333 34556666654 445666677788888865442 22333333222233
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEeccc--CC-ceEEEEEeCCCCEEEE
Q 017296 302 SGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYH--HA-TCNAVSFSSDCKLMAS 357 (374)
Q Consensus 302 ~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h--~~-~v~~v~~sp~~~~las 357 (374)
..+++|- ++-..+.+|+-..+-|+.....- ++.+| .+ .+.++..+++..+++-
T Consensus 175 ~~v~ISG--n~AYvA~~d~GL~ivDVSnp~sP-vli~~~n~g~g~~sv~vsdnr~y~vv 230 (370)
T COG5276 175 HDVAISG--NYAYVAWRDGGLTIVDVSNPHSP-VLIGSYNTGPGTYSVSVSDNRAYLVV 230 (370)
T ss_pred eeEEEec--CeEEEEEeCCCeEEEEccCCCCC-eEEEEEecCCceEEEEecCCeeEEEE
Confidence 5677774 45556678999999998654321 12222 23 6777777776556554
No 443
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=46.44 E-value=2.9e+02 Score=27.00 Aligned_cols=48 Identities=15% Similarity=0.248 Sum_probs=32.5
Q ss_pred CCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEE-EEEeCCCC-EEE
Q 017296 309 DSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNA-VSFSSDCK-LMA 356 (374)
Q Consensus 309 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~-v~~sp~~~-~la 356 (374)
.+.++..+..||.++.+|.++|+.+...+-......+ +.|.-+|+ |++
T Consensus 471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~~G~qYv~ 520 (527)
T TIGR03075 471 AGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGKQYVA 520 (527)
T ss_pred CCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEEEEeCCEEEEE
Confidence 3446667888999999999999999877654322211 33445777 444
No 444
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=45.65 E-value=2.3e+02 Score=25.47 Aligned_cols=79 Identities=14% Similarity=0.165 Sum_probs=48.8
Q ss_pred EEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECC------CCCEEEEEeCCCeEEEEEccCCeEEEEecccC--
Q 017296 269 SGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRP------DSKIAATAGWDRRVRIYNYRKGSALAILKYHH-- 340 (374)
Q Consensus 269 s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp------~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~-- 340 (374)
.|..-|.|-++|++.. .+.+..-...-..-+.++..| .+.+|+---.||+|..||..+++.+..++...
T Consensus 217 ~G~G~G~VdvFd~~G~---l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~ 293 (336)
T TIGR03118 217 AGAGLGYVNVFTLNGQ---LLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNH 293 (336)
T ss_pred cCCCcceEEEEcCCCc---EEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCC
Confidence 3445577888877532 222211111111234455543 56677777779999999999999888776543
Q ss_pred ----CceEEEEEeC
Q 017296 341 ----ATCNAVSFSS 350 (374)
Q Consensus 341 ----~~v~~v~~sp 350 (374)
...+.|+|-.
T Consensus 294 pi~i~GLWgL~fGn 307 (336)
T TIGR03118 294 PVKVDGLWSLTFGN 307 (336)
T ss_pred eEEecCeEEeeeCC
Confidence 3467788864
No 445
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=44.20 E-value=54 Score=33.29 Aligned_cols=131 Identities=14% Similarity=0.024 Sum_probs=75.0
Q ss_pred EEEEEecCCcEEEEeccCCCCceee---eecCccCeEEEEEecCCCceEEEecCCeEEE--------EEcCCCCCeEEEE
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTA---MKVHLEPVLCLSIDESCNGGISGGADQKIVL--------YNLDHSTGSCVIK 291 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~---~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~l--------wd~~~~~~~~~~~ 291 (374)
.+..|++++.|-++.-..+..+..+ .....+++.++.+... .+..|..||++-. ||.+.. .+
T Consensus 549 Tic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~--Slgagl~dgt~a~y~rap~gSwd~ep~--~~--- 621 (925)
T KOG3522|consen 549 TICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSG--SLGAGLIDGTLAVYGRAPSGSWDGEPN--IS--- 621 (925)
T ss_pred cccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhcccc--ccccCccCCccccccCCCCCCCCCCCc--cc---
Confidence 4677899999999875422211111 1112345555555322 2344445555544 433210 00
Q ss_pred EeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecc---cCCceEEEEEeCCCCEEEEEeCCCcEE
Q 017296 292 KEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKY---HHATCNAVSFSSDCKLMASASEDSTVA 365 (374)
Q Consensus 292 ~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~---h~~~v~~v~~sp~~~~las~s~D~~v~ 365 (374)
+......+.+.+|..| ++-|+.+|.|.++...+....+.+.. |...|+++...-+|-+++-++.|-.++
T Consensus 622 --~~~g~lPvrsla~~ed---~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~~~rl 693 (925)
T KOG3522|consen 622 --IPTGSLPVRSLAFQED---FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGDEERL 693 (925)
T ss_pred --cccCCccccchhhhhc---eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCCEEEE
Confidence 1111234666666655 45678899999999987655554444 456899999887877887777665444
No 446
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=43.98 E-value=2.8e+02 Score=26.02 Aligned_cols=65 Identities=11% Similarity=0.019 Sum_probs=41.4
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEEccCCe-----EEEEeccc--CCceEEEEEeCCCCEEEEEeCCCcEEE
Q 017296 299 PGISGTSIRPDSKIAATAGWDRRVRIYNYRKGS-----ALAILKYH--HATCNAVSFSSDCKLMASASEDSTVAL 366 (374)
Q Consensus 299 ~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~-----~~~~~~~h--~~~v~~v~~sp~~~~las~s~D~~v~~ 366 (374)
..+.++.+.+++.+++.+ .+|.+. |....++ .+..+... ...+..+.|.+++..+++ +.+|.+..
T Consensus 281 ~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~~ 352 (398)
T PLN00033 281 RRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAA-GGSGILLR 352 (398)
T ss_pred cceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEE-ECCCcEEE
Confidence 457889999999887644 677764 4444553 23333322 135888999988776665 45666654
No 447
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.96 E-value=1.3e+02 Score=32.02 Aligned_cols=129 Identities=8% Similarity=-0.018 Sum_probs=74.1
Q ss_pred EEEEecCCcEEEEeccCCCCc----eeeeecCc------cCeEEEEEecCC-CceEEEecCCeEEEEEcCCCCCeEEEEE
Q 017296 224 VLAGYEDGSILVWDIRNPGIP----LTAMKVHL------EPVLCLSIDESC-NGGISGGADQKIVLYNLDHSTGSCVIKK 292 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~----~~~~~~h~------~~v~~~~~~~~~-~~~~s~s~D~~i~lwd~~~~~~~~~~~~ 292 (374)
++..+++-.|..||+++...- ...++.|. .-..++.+.|.. ...+....|+.|++..+......+. .
T Consensus 117 v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~-s- 194 (1405)
T KOG3630|consen 117 VVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVT-S- 194 (1405)
T ss_pred EEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhc-c-
Confidence 334555567888999753211 11122222 223444454432 1235667788888876542211111 0
Q ss_pred eeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEeccc----CCceEEEEEeCCCCEEEE
Q 017296 293 EINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYH----HATCNAVSFSSDCKLMAS 357 (374)
Q Consensus 293 ~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h----~~~v~~v~~sp~~~~las 357 (374)
.. -....++++|+|-|+.++.|-..|++.=|.. ..+....+... ...|.+|.|....++|+.
T Consensus 195 -~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 195 -FP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred -cC-cccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 01 1124789999999999999999999987744 33322333222 257999999888777765
No 448
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=42.91 E-value=2.9 Score=39.09 Aligned_cols=133 Identities=10% Similarity=0.086 Sum_probs=81.6
Q ss_pred EEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCce-EEEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeE
Q 017296 224 VLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGG-ISGGADQKIVLYNLDHSTGSCVIKKEINLERPGIS 302 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~ 302 (374)
++.++.+..+..||-... .+.. ...+.....+++|.++..+ +.+-.-+.+.+||+...--+ .+ +.... +.-.
T Consensus 49 lavaca~tiv~~YD~agq--~~le-~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq-qL--E~gg~-~s~s 121 (615)
T KOG2247|consen 49 LAVACANTIVIYYDKAGQ--VILE-LNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ-QL--ESGGT-SSKS 121 (615)
T ss_pred eehhhhhhHHHhhhhhcc--eecc-cCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH-HH--hccCc-chHH
Confidence 555666777777875321 1111 1123344455666555443 45667889999999643111 11 11110 1111
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcE
Q 017296 303 GTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTV 364 (374)
Q Consensus 303 ~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v 364 (374)
-+.|++....++.+...|.+.|++..+.+.+-..-.|..++..+++.+.+. .+.++.|.++
T Consensus 122 ll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~L 182 (615)
T KOG2247|consen 122 LLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDNTL 182 (615)
T ss_pred HHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHHHH
Confidence 257888888888888999999999988776655545999999999998764 4445555443
No 449
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=42.90 E-value=3.1e+02 Score=26.19 Aligned_cols=129 Identities=13% Similarity=0.125 Sum_probs=61.4
Q ss_pred cCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCCC-------CC---eEEEEEeeecCC
Q 017296 229 EDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHS-------TG---SCVIKKEINLER 298 (374)
Q Consensus 229 ~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~-------~~---~~~~~~~~~~~~ 298 (374)
.++.|.+||+.+. ..+..+. ..+|..+.+++++..++..+.+ ++.+++.+.. .| ......++ .
T Consensus 124 ~~~~i~~yDw~~~-~~i~~i~--v~~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~---~ 196 (443)
T PF04053_consen 124 SSDFICFYDWETG-KLIRRID--VSAVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEI---S 196 (443)
T ss_dssp ETTEEEEE-TTT---EEEEES--S-E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE----
T ss_pred CCCCEEEEEhhHc-ceeeEEe--cCCCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEe---c
Confidence 4558999999763 3444443 3358999999998877777655 5666554321 00 11222221 2
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCCCcEEEecCC
Q 017296 299 PGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASEDSTVALWELY 370 (374)
Q Consensus 299 ~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~~W~~~ 370 (374)
..|.+.+|-.| -++.+.. . .++. +-.|+ ..++..-..++.-+...|+...|.....|+.|..+.+.
T Consensus 197 ~~IkSg~W~~d-~fiYtT~-~-~lkY--l~~Ge-~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 197 ERIKSGCWVED-CFIYTTS-N-HLKY--LVNGE-TGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp S--SEEEEETT-EEEEE-T-T-EEEE--EETTE-EEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred ceeEEEEEEcC-EEEEEcC-C-eEEE--EEcCC-cceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 34555566555 2333322 2 5544 22333 22333224566667788877778888888888887664
No 450
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=42.01 E-value=1e+02 Score=26.64 Aligned_cols=64 Identities=16% Similarity=0.189 Sum_probs=38.4
Q ss_pred CCeEEEEECCCCCEEEEEeC-C--CeEEEEEccC---CeEEEEe---cccCCceEEEEEeCCCCEEEEEeCCC
Q 017296 299 PGISGTSIRPDSKIAATAGW-D--RRVRIYNYRK---GSALAIL---KYHHATCNAVSFSSDCKLMASASEDS 362 (374)
Q Consensus 299 ~~v~~~~~sp~~~~l~s~~~-d--g~v~iwd~~~---~~~~~~~---~~h~~~v~~v~~sp~~~~las~s~D~ 362 (374)
..+.+-+|-|||+++.+||. | +.+|+++..+ ....... -.....-.++..-|||+.|+-|+.+.
T Consensus 67 ~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~ 139 (243)
T PF07250_consen 67 TFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNN 139 (243)
T ss_pred CcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCC
Confidence 34556678899999998886 2 4588887643 1111111 11223334455668999887776653
No 451
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=41.78 E-value=71 Score=20.26 Aligned_cols=16 Identities=31% Similarity=0.453 Sum_probs=9.6
Q ss_pred eEEEEEeCCCCEEEEE
Q 017296 343 CNAVSFSSDCKLMASA 358 (374)
Q Consensus 343 v~~v~~sp~~~~las~ 358 (374)
+.+++..|||+.|+.|
T Consensus 3 ~~~~~~q~DGkIlv~G 18 (55)
T TIGR02608 3 AYAVAVQSDGKILVAG 18 (55)
T ss_pred eEEEEECCCCcEEEEE
Confidence 3455666666666655
No 452
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=41.55 E-value=5.2e+02 Score=28.46 Aligned_cols=38 Identities=21% Similarity=0.098 Sum_probs=24.9
Q ss_pred eEEeecCCCceeEEEEeC--CCCE-----EEEecCCCcEEEEeCc
Q 017296 11 VAVLRGHRASVTDVCFHQ--TKPI-----LFAGTTGGELRIWDTV 48 (374)
Q Consensus 11 ~~~l~gH~~~V~~l~~~~--~~~~-----l~s~s~D~~v~vWd~~ 48 (374)
..+..||+.+|.|..-.. ++.. -+..+-||++.|=|.+
T Consensus 340 t~mgdG~qR~veC~~C~G~a~~~~L~aPvala~a~DGSl~VGDfN 384 (1899)
T KOG4659|consen 340 TAMGDGHQRDVECPKCEGKADSISLFAPVALAYAPDGSLIVGDFN 384 (1899)
T ss_pred EeccCcccccccCCCCCCccccceeeceeeEEEcCCCcEEEccch
Confidence 345569999999876642 2222 2355678999888753
No 453
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=41.45 E-value=1.2e+02 Score=29.06 Aligned_cols=53 Identities=15% Similarity=0.111 Sum_probs=36.1
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEEccCCe--EEEEec-----ccCCceEEEEEeCCC
Q 017296 300 GISGTSIRPDSKIAATAGWDRRVRIYNYRKGS--ALAILK-----YHHATCNAVSFSSDC 352 (374)
Q Consensus 300 ~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~-----~h~~~v~~v~~sp~~ 352 (374)
.-+.++|.||++++++--..|+|++++..++. .+..+. ..++....|+|+|+-
T Consensus 31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 35689999999887754446999999765442 221111 135678999999884
No 454
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=39.40 E-value=3.3e+02 Score=25.57 Aligned_cols=31 Identities=16% Similarity=0.380 Sum_probs=24.7
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEEccC
Q 017296 299 PGISGTSIRPDSKIAATAGWDRRVRIYNYRK 329 (374)
Q Consensus 299 ~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~ 329 (374)
..+.+++..+..+++++...+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3488888888889999999999999999974
No 455
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=39.18 E-value=2.9e+02 Score=24.91 Aligned_cols=57 Identities=16% Similarity=0.289 Sum_probs=38.4
Q ss_pred eEEEEECCCCCEEEEEeCC------CeEEEEEccCCeEEEEec-------------c--cCCceEEEEEeCCCCEEEEE
Q 017296 301 ISGTSIRPDSKIAATAGWD------RRVRIYNYRKGSALAILK-------------Y--HHATCNAVSFSSDCKLMASA 358 (374)
Q Consensus 301 v~~~~~sp~~~~l~s~~~d------g~v~iwd~~~~~~~~~~~-------------~--h~~~v~~v~~sp~~~~las~ 358 (374)
.-++++.+++.++++.-.+ -.|..++.. |+.+..+. + .-...-+|+++|||+.|.++
T Consensus 87 ~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 87 PEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred hhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 3467787888888877777 788888865 65443331 0 11356789999999955543
No 456
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=38.78 E-value=2.2e+02 Score=29.40 Aligned_cols=48 Identities=17% Similarity=0.233 Sum_probs=31.7
Q ss_pred CCCEEEE-EeCCCeEEEEEccCCeEEEEecccCCce-EEEEEe-CCCC-EEE
Q 017296 309 DSKIAAT-AGWDRRVRIYNYRKGSALAILKYHHATC-NAVSFS-SDCK-LMA 356 (374)
Q Consensus 309 ~~~~l~s-~~~dg~v~iwd~~~~~~~~~~~~h~~~v-~~v~~s-p~~~-~la 356 (374)
.+.++.. |+.|+.++-+|.++|+.+...+-..+.. .=+.+. .||+ |++
T Consensus 690 agglvF~~gt~d~~l~A~D~~tGk~lW~~~l~~~~~a~P~tY~~~~GkQYVv 741 (764)
T TIGR03074 690 AGGLVFIGATQDNYLRAYDLSTGKELWKARLPAGGQATPMTYMGKDGKQYVV 741 (764)
T ss_pred cCCEEEEEeCCCCEEEEEECCCCceeeEeeCCCCcccCCEEEEecCCEEEEE
Confidence 3455554 7789999999999999987665332211 114555 6887 554
No 457
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=38.64 E-value=1.4e+02 Score=21.00 Aligned_cols=31 Identities=16% Similarity=0.292 Sum_probs=23.5
Q ss_pred CCceEEEEEeCCCCEE-EEEeCCCcEEEecCC
Q 017296 340 HATCNAVSFSSDCKLM-ASASEDSTVALWELY 370 (374)
Q Consensus 340 ~~~v~~v~~sp~~~~l-as~s~D~~v~~W~~~ 370 (374)
-...+.|+++|++++| ++......|++++..
T Consensus 53 ~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 53 FSFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 3456788999999865 455778999998764
No 458
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=37.65 E-value=66 Score=17.03 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=17.6
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEE
Q 017296 301 ISGTSIRPDSKIAATAGWDRRVRIY 325 (374)
Q Consensus 301 v~~~~~sp~~~~l~s~~~dg~v~iw 325 (374)
+.+++.++ ++++.+..-+.+|+|
T Consensus 4 i~aia~g~--~~vavaTS~~~lRif 26 (27)
T PF12341_consen 4 IEAIAAGD--SWVAVATSAGYLRIF 26 (27)
T ss_pred EEEEEccC--CEEEEEeCCCeEEec
Confidence 55666664 478888889999987
No 459
>PRK10115 protease 2; Provisional
Probab=37.61 E-value=4.6e+02 Score=26.71 Aligned_cols=109 Identities=10% Similarity=-0.042 Sum_probs=54.4
Q ss_pred eEEEEEecCCCceEE-----EecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEE-EEeCC-----CeEE
Q 017296 255 VLCLSIDESCNGGIS-----GGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAA-TAGWD-----RRVR 323 (374)
Q Consensus 255 v~~~~~~~~~~~~~s-----~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-s~~~d-----g~v~ 323 (374)
+..+.++|++..++- |+...+|++-|+.++ ..+ ...+.. .-..++|++|++.|+ +...+ ..|.
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg--~~l-~~~i~~---~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~ 202 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETG--NWY-PELLDN---VEPSFVWANDSWTFYYVRKHPVTLLPYQVW 202 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCC--CCC-CccccC---cceEEEEeeCCCEEEEEEecCCCCCCCEEE
Confidence 444555666665543 223346777776532 211 011111 114589999988654 43322 3577
Q ss_pred EEEccCC--eEEEEecccCCceE-EEEEeCCCCEEEEE---eCCCcEEEecC
Q 017296 324 IYNYRKG--SALAILKYHHATCN-AVSFSSDCKLMASA---SEDSTVALWEL 369 (374)
Q Consensus 324 iwd~~~~--~~~~~~~~h~~~v~-~v~~sp~~~~las~---s~D~~v~~W~~ 369 (374)
++++.++ +....+........ .+..+.|+++++.. ..++.+.+++.
T Consensus 203 ~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 203 RHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred EEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 7788776 33223332222233 22334488865432 33456777775
No 460
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=37.20 E-value=59 Score=18.58 Aligned_cols=20 Identities=25% Similarity=0.405 Sum_probs=15.6
Q ss_pred CCCEEEEecCCCcEEEEeCc
Q 017296 29 TKPILFAGTTGGELRIWDTV 48 (374)
Q Consensus 29 ~~~~l~s~s~D~~v~vWd~~ 48 (374)
.+..|+.++.|+.+...|..
T Consensus 20 ~~g~vyv~~~dg~l~ald~~ 39 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAA 39 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT
T ss_pred ECCEEEEEcCCCEEEEEeCC
Confidence 46688888999999998865
No 461
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=37.02 E-value=1.3e+02 Score=21.37 Aligned_cols=43 Identities=14% Similarity=0.280 Sum_probs=24.1
Q ss_pred EEecCCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEE
Q 017296 269 SGGADQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATA 316 (374)
Q Consensus 269 s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~ 316 (374)
.+...|.+..||..+.+-..+ ...+ .....++++||+.+++.+
T Consensus 32 e~~~~GRll~ydp~t~~~~vl-~~~L----~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 32 EGRPTGRLLRYDPSTKETTVL-LDGL----YFPNGVALSPDESFVLVA 74 (89)
T ss_dssp HT---EEEEEEETTTTEEEEE-EEEE----SSEEEEEE-TTSSEEEEE
T ss_pred cCCCCcCEEEEECCCCeEEEe-hhCC----CccCeEEEcCCCCEEEEE
Confidence 345577788888765432222 2222 346789999999976544
No 462
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=36.56 E-value=1.3e+02 Score=30.89 Aligned_cols=67 Identities=13% Similarity=0.012 Sum_probs=49.0
Q ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEe--------------cc-----cCCceEEEEEeCCCCEEEEEe
Q 017296 299 PGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAIL--------------KY-----HHATCNAVSFSSDCKLMASAS 359 (374)
Q Consensus 299 ~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~--------------~~-----h~~~v~~v~~sp~~~~las~s 359 (374)
..|.+++...-+.+++-+-.||+|.+.|..+.+.+... +. +...+..++|||++..++.-.
T Consensus 260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~ 339 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQID 339 (753)
T ss_pred CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEe
Confidence 34777777777888999999999999998776433222 00 011345689999999999988
Q ss_pred CCCcEE
Q 017296 360 EDSTVA 365 (374)
Q Consensus 360 ~D~~v~ 365 (374)
.|+.++
T Consensus 340 ~~~~~~ 345 (753)
T PF11635_consen 340 EDGKTK 345 (753)
T ss_pred cCCCce
Confidence 888866
No 463
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=35.02 E-value=2.3e+02 Score=25.34 Aligned_cols=69 Identities=14% Similarity=0.229 Sum_probs=45.5
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCc---eEE--EEEeCCCCEEEEEeCCCcEEEecC
Q 017296 301 ISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHAT---CNA--VSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 301 v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~---v~~--v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
+.++...++|.+|+|.=.-.+|.+.|.++|+.+..+.+..+. ... .++--|-+++-.+..+++|.++|-
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN 219 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN 219 (299)
T ss_pred eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence 677777788899998888888988898889888887654110 011 122223334444466777777765
No 464
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=33.36 E-value=3.6e+02 Score=24.29 Aligned_cols=73 Identities=16% Similarity=0.229 Sum_probs=44.7
Q ss_pred CCCeEEEEECCCCCEEEEEeC-----CC--e-------EEEE--EccC-Ce----EEEEecc-----cCCceEEEEEeCC
Q 017296 298 RPGISGTSIRPDSKIAATAGW-----DR--R-------VRIY--NYRK-GS----ALAILKY-----HHATCNAVSFSSD 351 (374)
Q Consensus 298 ~~~v~~~~~sp~~~~l~s~~~-----dg--~-------v~iw--d~~~-~~----~~~~~~~-----h~~~v~~v~~sp~ 351 (374)
..+.-+++++|+|+.|.++.+ |+ . ++++ |..+ ++ ..+.+.. ....|..+.+-++
T Consensus 146 N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d 225 (326)
T PF13449_consen 146 NRGFEGLAVSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPD 225 (326)
T ss_pred CCCeEEEEECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECC
Confidence 356889999999995554443 22 1 5554 4433 21 2233332 3467888999999
Q ss_pred CCEEEE-----EeCCCcEEEecCC
Q 017296 352 CKLMAS-----ASEDSTVALWELY 370 (374)
Q Consensus 352 ~~~las-----~s~D~~v~~W~~~ 370 (374)
+++|+- ......++|+.++
T Consensus 226 ~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 226 GRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred CcEEEEEccCCCCccceEEEEEEE
Confidence 997763 2245677777654
No 465
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=33.23 E-value=4.7e+02 Score=25.58 Aligned_cols=69 Identities=12% Similarity=0.106 Sum_probs=40.0
Q ss_pred CCEEEEecCCCcEEEEeCcccceeeeeeeeec--eeeeEEe---ccCCccccceeeeccccCeEEEEecCCCCC
Q 017296 30 KPILFAGTTGGELRIWDTVQHRTVSSSWVHSA--AHGIVSV---ATGPSIGLNKVISQGRDGTVKCWDIENGGL 98 (374)
Q Consensus 30 ~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~l~s~~~D~~vrvwd~~~~~~ 98 (374)
+.+|+.++.++.|.-.|..+|+.+=....... .....++ ...+...+.+++.+..|+.|.-.|..+|+.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~ 142 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKV 142 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCE
Confidence 55777777788899999998875422211100 0000011 011111234677788899999999988853
No 466
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=28.16 E-value=7.5e+02 Score=26.26 Aligned_cols=90 Identities=16% Similarity=0.232 Sum_probs=57.0
Q ss_pred CCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeEEEEecccCCceEEEEEeCCC
Q 017296 273 DQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDC 352 (374)
Q Consensus 273 D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~ 352 (374)
.|.|.++.++. .++..+..+.... ..+.++.. -+|+++| +-...|++|++.+.+.+..-..|...+..+...-.|
T Consensus 806 ~GRIivfe~~e-~~~L~~v~e~~v~-Gav~aL~~-fngkllA--~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~g 880 (1096)
T KOG1897|consen 806 NGRIIVFEFEE-LNSLELVAETVVK-GAVYALVE-FNGKLLA--GINQSVRLYEWTTERELRIECNISNPIIALDLQVKG 880 (1096)
T ss_pred cceEEEEEEec-CCceeeeeeeeec-cceeehhh-hCCeEEE--ecCcEEEEEEccccceehhhhcccCCeEEEEEEecC
Confidence 47888887765 2222222222211 12222221 2677766 457899999998887776666788888888888888
Q ss_pred CEEEEEeCCCcEEEe
Q 017296 353 KLMASASEDSTVALW 367 (374)
Q Consensus 353 ~~las~s~D~~v~~W 367 (374)
..++.|.-=+.+.+-
T Consensus 881 deI~VgDlm~Sitll 895 (1096)
T KOG1897|consen 881 DEIAVGDLMRSITLL 895 (1096)
T ss_pred cEEEEeeccceEEEE
Confidence 888887655555543
No 467
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=27.78 E-value=3.7e+02 Score=22.67 Aligned_cols=140 Identities=13% Similarity=0.103 Sum_probs=72.6
Q ss_pred EEEEecCCcEEEEeccCCCC-ceeeeecCccCeEEEEEecCCCceEEEec------CCeEEE---EEcCCCCCeEEE---
Q 017296 224 VLAGYEDGSILVWDIRNPGI-PLTAMKVHLEPVLCLSIDESCNGGISGGA------DQKIVL---YNLDHSTGSCVI--- 290 (374)
Q Consensus 224 ~~~gs~dg~i~iwdl~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~s~s~------D~~i~l---wd~~~~~~~~~~--- 290 (374)
++.+...+.|.+|++..... ++..+. --+.|..+.....|++++|=-. ...+|+ |.........+.
T Consensus 31 Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vRi 109 (215)
T PF14761_consen 31 LFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVRI 109 (215)
T ss_pred EEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEEE
Confidence 54556778899999974333 233332 3478888888888888877322 225555 333211111110
Q ss_pred ------------------EEeeecCCCCeEEEEECCCCCEEEEEeCCCeEEEEEccCCeE----EEE-------ecccCC
Q 017296 291 ------------------KKEINLERPGISGTSIRPDSKIAATAGWDRRVRIYNYRKGSA----LAI-------LKYHHA 341 (374)
Q Consensus 291 ------------------~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~v~iwd~~~~~~----~~~-------~~~h~~ 341 (374)
.-++.. .....+++-.|...-|+.|+ ++++.+|.+..... +.. +..|.+
T Consensus 110 aG~~v~~~~~~~~~~qleiiElPl-~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~ 187 (215)
T PF14761_consen 110 AGHRVTPSFNESSKDQLEIIELPL-SEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDN 187 (215)
T ss_pred cccccccCCCCccccceEEEEecC-CCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEechhhhhheecC
Confidence 011111 12345666667544455565 66888997753321 111 111222
Q ss_pred -ceEEEEEeCCCCEEEEEeCCCcEEEecC
Q 017296 342 -TCNAVSFSSDCKLMASASEDSTVALWEL 369 (374)
Q Consensus 342 -~v~~v~~sp~~~~las~s~D~~v~~W~~ 369 (374)
.+..++|. +.++|-.+ |-.+++..+
T Consensus 188 ~~p~~v~ic--~~yiA~~s-~~ev~Vlkl 213 (215)
T PF14761_consen 188 FKPTQVAIC--EGYIAVMS-DLEVLVLKL 213 (215)
T ss_pred ceEEEEEEE--eeEEEEec-CCEEEEEEE
Confidence 24445554 34777665 555666554
No 468
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=27.71 E-value=2.2e+02 Score=28.42 Aligned_cols=59 Identities=20% Similarity=0.246 Sum_probs=34.5
Q ss_pred eEEEEECCCCCEEEEEe-----CCCeEEEEEccCCeEEEEecccCCceEEEEEeCCCCEEEEEeCC
Q 017296 301 ISGTSIRPDSKIAATAG-----WDRRVRIYNYRKGSALAILKYHHATCNAVSFSSDCKLMASASED 361 (374)
Q Consensus 301 v~~~~~sp~~~~l~s~~-----~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D 361 (374)
+-.++.|||.++||-+- +.=++++-|+.+++.+.. .-.+...+++|.+|++.|.-...|
T Consensus 131 Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d--~i~~~~~~~~Wa~d~~~lfYt~~d 194 (682)
T COG1770 131 LGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPD--EITNTSGSFAWAADGKTLFYTRLD 194 (682)
T ss_pred eeeeeeCCCCceEEEEEecccccEEEEEEEecccccccch--hhcccccceEEecCCCeEEEEEEc
Confidence 44566777777776332 223577777777765532 122345567788887766554433
No 469
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=25.57 E-value=2.2e+02 Score=27.50 Aligned_cols=58 Identities=12% Similarity=0.134 Sum_probs=39.9
Q ss_pred EEEEEecCCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcC
Q 017296 223 NVLAGYEDGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLD 282 (374)
Q Consensus 223 ~~~~gs~dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~ 282 (374)
++++|+..|.||+||-- ....-+.+.+-.+.|..+.+..+|..++.. ....+.|-|+.
T Consensus 575 yIa~as~kGDirLyDRi-g~rAKtalP~lG~aIk~idvta~Gk~ilaT-Ck~yllL~d~~ 632 (776)
T COG5167 575 YIAAASRKGDIRLYDRI-GKRAKTALPGLGDAIKHIDVTANGKHILAT-CKNYLLLTDVP 632 (776)
T ss_pred eEEEecCCCceeeehhh-cchhhhcCcccccceeeeEeecCCcEEEEe-ecceEEEEecc
Confidence 68999999999999953 122223455667788888887777765443 45567776664
No 470
>PHA03098 kelch-like protein; Provisional
Probab=25.34 E-value=6.3e+02 Score=24.51 Aligned_cols=60 Identities=15% Similarity=0.203 Sum_probs=30.3
Q ss_pred CCCCEEEEEeCCC--------eEEEEEccCCeEE--EEecccCCceEEEEEeCCCCEEEEEeCC-----CcEEEecC
Q 017296 308 PDSKIAATAGWDR--------RVRIYNYRKGSAL--AILKYHHATCNAVSFSSDCKLMASASED-----STVALWEL 369 (374)
Q Consensus 308 p~~~~l~s~~~dg--------~v~iwd~~~~~~~--~~~~~h~~~v~~v~~sp~~~~las~s~D-----~~v~~W~~ 369 (374)
.++++.+.||.+. .+.+||..+.+=. ..+.........+. .++++++.|+.+ ..|..+|.
T Consensus 436 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~ 510 (534)
T PHA03098 436 HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDD 510 (534)
T ss_pred ECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeC
Confidence 3566777776532 3778888765321 11111111111122 377877777754 35555554
No 471
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=24.75 E-value=9.4e+02 Score=26.28 Aligned_cols=134 Identities=18% Similarity=0.266 Sum_probs=74.9
Q ss_pred CcEEEEeccC----CCCceeeee-------cCccCeEEEEEecCCCceEEEecCCeEEEEEcCCCCCeEEEEEeeecCCC
Q 017296 231 GSILVWDIRN----PGIPLTAMK-------VHLEPVLCLSIDESCNGGISGGADQKIVLYNLDHSTGSCVIKKEINLERP 299 (374)
Q Consensus 231 g~i~iwdl~~----~~~~~~~~~-------~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~ 299 (374)
|.+.|||+-+ ++.|.+..+ .-.++|..++-- .+.+..|....|.+|+++..+...-. .-+. .
T Consensus 1065 Gr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV---~G~l~~~~GqKI~v~~l~r~~~ligV-aFiD---~ 1137 (1366)
T KOG1896|consen 1065 GRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEV---RGHLLSSQGQKIIVRKLDRDSELIGV-AFID---L 1137 (1366)
T ss_pred ccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEe---ccEEEEccCcEEEEEEeccCCcceee-EEec---c
Confidence 8899999843 444433221 123455554331 12244556678999999544321110 0011 1
Q ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEEcc-CCeEEEEeccc--CCceEEEEEeCCCC--EEEEEeCCCcEEEecCCC
Q 017296 300 GISGTSIRPDSKIAATAGWDRRVRIYNYR-KGSALAILKYH--HATCNAVSFSSDCK--LMASASEDSTVALWELYP 371 (374)
Q Consensus 300 ~v~~~~~sp~~~~l~s~~~dg~v~iwd~~-~~~~~~~~~~h--~~~v~~v~~sp~~~--~las~s~D~~v~~W~~~~ 371 (374)
.+.-....--..+|+.|.--+.|.+.-.+ .+..+..+... .-.+.++.|--||. .++.+.+|++|.++-..|
T Consensus 1138 ~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~P 1214 (1366)
T KOG1896|consen 1138 PLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYAP 1214 (1366)
T ss_pred ceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeCC
Confidence 12222222334567777777777765543 34444444322 24688889988887 567889999999986654
No 472
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=24.73 E-value=2.2e+02 Score=25.23 Aligned_cols=49 Identities=12% Similarity=0.245 Sum_probs=30.7
Q ss_pred eEEEEEccCCeEEEEec-ccCCceEEEEEeCCCCEEEEEe------CCCcEEEecCC
Q 017296 321 RVRIYNYRKGSALAILK-YHHATCNAVSFSSDCKLMASAS------EDSTVALWELY 370 (374)
Q Consensus 321 ~v~iwd~~~~~~~~~~~-~h~~~v~~v~~sp~~~~las~s------~D~~v~~W~~~ 370 (374)
.|++||....+ ...+. +-.+.|..+.|..+.++++.|. ....+-.||+.
T Consensus 17 ~lC~yd~~~~q-W~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~ 72 (281)
T PF12768_consen 17 GLCLYDTDNSQ-WSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFK 72 (281)
T ss_pred EEEEEECCCCE-eecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecC
Confidence 57788875543 33222 2346789999987777777654 45556666654
No 473
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=24.34 E-value=5.3e+02 Score=26.69 Aligned_cols=72 Identities=13% Similarity=0.185 Sum_probs=43.6
Q ss_pred CeEEEEECC-CCCEEEEEeCCCeEEEEEccCC-----eEEEEecccCCce----------EEEEEeCCCCEEEEEeCCCc
Q 017296 300 GISGTSIRP-DSKIAATAGWDRRVRIYNYRKG-----SALAILKYHHATC----------NAVSFSSDCKLMASASEDST 363 (374)
Q Consensus 300 ~v~~~~~sp-~~~~l~s~~~dg~v~iwd~~~~-----~~~~~~~~h~~~v----------~~v~~sp~~~~las~s~D~~ 363 (374)
....++|.| +.+.+|.-...|...|||+... ..+.....+.+.+ ..+.|.++-..|+-++. ..
T Consensus 147 ~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~ 225 (765)
T PF10214_consen 147 PHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SK 225 (765)
T ss_pred ccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-Cc
Confidence 356789998 4557899999999999999211 1111111222222 25778877666665553 44
Q ss_pred EEEecCCCC
Q 017296 364 VALWELYPP 372 (374)
Q Consensus 364 v~~W~~~~~ 372 (374)
+.+.|+..+
T Consensus 226 l~~~d~~~~ 234 (765)
T PF10214_consen 226 LMLIDFESN 234 (765)
T ss_pred eEEEECCCC
Confidence 556666543
No 474
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.98 E-value=3.1e+02 Score=24.48 Aligned_cols=79 Identities=16% Similarity=0.143 Sum_probs=51.4
Q ss_pred ecCCCceeEEEEeCCCCEEEEecCCCcEEEEeCcccceeeeeeeeeceeeeEEeccCCccccceeeeccccCeEEEEecC
Q 017296 15 RGHRASVTDVCFHQTKPILFAGTTGGELRIWDTVQHRTVSSSWVHSAAHGIVSVATGPSIGLNKVISQGRDGTVKCWDIE 94 (374)
Q Consensus 15 ~gH~~~V~~l~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~vrvwd~~ 94 (374)
.|-+..|.+|.|+|+.+.|++-.....-.||=..+|+.+.+++... .+.--.+.+.. +++.+++-=.|+++-++.+.
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g-~~DpE~Ieyig--~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG-FSDPETIEYIG--GNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccc-cCChhHeEEec--CCEEEEEehhcceEEEEEEc
Confidence 3455669999999999999988888888888888888877654211 11111122221 33444455567888777776
Q ss_pred CC
Q 017296 95 NG 96 (374)
Q Consensus 95 ~~ 96 (374)
.+
T Consensus 159 ~~ 160 (316)
T COG3204 159 AD 160 (316)
T ss_pred CC
Confidence 54
No 475
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=23.74 E-value=34 Score=17.33 Aligned_cols=8 Identities=25% Similarity=0.854 Sum_probs=5.8
Q ss_pred EECCCCCE
Q 017296 305 SIRPDSKI 312 (374)
Q Consensus 305 ~~sp~~~~ 312 (374)
.|||+|++
T Consensus 7 ~FSp~Grl 14 (23)
T PF10584_consen 7 TFSPDGRL 14 (23)
T ss_dssp SBBTTSSB
T ss_pred eECCCCeE
Confidence 47888875
No 476
>PHA03098 kelch-like protein; Provisional
Probab=23.71 E-value=5.6e+02 Score=24.89 Aligned_cols=22 Identities=14% Similarity=0.216 Sum_probs=15.2
Q ss_pred CCCEEEEEeCC-----CeEEEEEccCC
Q 017296 309 DSKIAATAGWD-----RRVRIYNYRKG 330 (374)
Q Consensus 309 ~~~~l~s~~~d-----g~v~iwd~~~~ 330 (374)
++++.+.||.+ ..+..||..+.
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~ 368 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGES 368 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCC
Confidence 57777888875 34667777654
No 477
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.46 E-value=8.1e+02 Score=25.10 Aligned_cols=51 Identities=16% Similarity=0.152 Sum_probs=34.7
Q ss_pred CCcEEEEeccCCCCceeeeecCccCeEEEEEecCCCceEEEecCCeEEEEEcCC
Q 017296 230 DGSILVWDIRNPGIPLTAMKVHLEPVLCLSIDESCNGGISGGADQKIVLYNLDH 283 (374)
Q Consensus 230 dg~i~iwdl~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~s~s~D~~i~lwd~~~ 283 (374)
.-.|+||++. +..+..+.-...++..+.|+.+. -++--..||++.++++-+
T Consensus 63 ~~~I~If~~s--G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 63 RPYIRIFNIS--GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLG 113 (829)
T ss_pred ceeEEEEecc--ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecch
Confidence 4468888873 44444433333478888887664 367778999999999853
No 478
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=22.64 E-value=2.3e+02 Score=18.50 Aligned_cols=29 Identities=24% Similarity=0.300 Sum_probs=22.0
Q ss_pred ceEEEecCCeEEEEEcCCCCCeEEEEEee
Q 017296 266 GGISGGADQKIVLYNLDHSTGSCVIKKEI 294 (374)
Q Consensus 266 ~~~s~s~D~~i~lwd~~~~~~~~~~~~~~ 294 (374)
.|+.-+.|+.|++|..+..++...+.++.
T Consensus 31 ~Fav~~e~~~iKIfkyd~~tNei~L~KE~ 59 (63)
T PF14157_consen 31 HFAVVDEDGQIKIFKYDEDTNEITLKKEF 59 (63)
T ss_dssp EEEEE-ETTEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEecCCeEEEEEeCCCCCeEEEEEee
Confidence 45556789999999998888887776654
No 479
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=22.45 E-value=5.5e+02 Score=22.74 Aligned_cols=72 Identities=13% Similarity=0.166 Sum_probs=43.2
Q ss_pred CCeEEEEEcCCCCCeEEEEEeeecCCCCeEEEEECCCCCEEEEEe------CCCeEEEEEccCCeEEEEeccc-----CC
Q 017296 273 DQKIVLYNLDHSTGSCVIKKEINLERPGISGTSIRPDSKIAATAG------WDRRVRIYNYRKGSALAILKYH-----HA 341 (374)
Q Consensus 273 D~~i~lwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~------~dg~v~iwd~~~~~~~~~~~~h-----~~ 341 (374)
-..|++||.+..+ +.. . ...-...|+.+.|..+.+++++|. ....+..||..+.. ...+.+- ++
T Consensus 15 C~~lC~yd~~~~q--W~~-~-g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~-w~~~~~~~s~~ipg 89 (281)
T PF12768_consen 15 CPGLCLYDTDNSQ--WSS-P-GNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT-WSSLGGGSSNSIPG 89 (281)
T ss_pred CCEEEEEECCCCE--eec-C-CCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe-eeecCCcccccCCC
Confidence 4568899876432 111 0 011223588899887777777775 35568889987654 3334331 36
Q ss_pred ceEEEEEe
Q 017296 342 TCNAVSFS 349 (374)
Q Consensus 342 ~v~~v~~s 349 (374)
+|..+.+.
T Consensus 90 pv~a~~~~ 97 (281)
T PF12768_consen 90 PVTALTFI 97 (281)
T ss_pred cEEEEEee
Confidence 77777764
No 480
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=22.32 E-value=1.5e+02 Score=16.99 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=18.1
Q ss_pred ceeEEEEeCCCCEEEEecCCC
Q 017296 20 SVTDVCFHQTKPILFAGTTGG 40 (374)
Q Consensus 20 ~V~~l~~~~~~~~l~s~s~D~ 40 (374)
....|++.++|+..++|..++
T Consensus 14 ~~~~IavD~~GNiYv~G~T~~ 34 (38)
T PF06739_consen 14 YGNGIAVDSNGNIYVTGYTNG 34 (38)
T ss_pred eEEEEEECCCCCEEEEEeecC
Confidence 468999999999999998776
No 481
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=20.88 E-value=6.2e+02 Score=22.79 Aligned_cols=55 Identities=15% Similarity=0.176 Sum_probs=30.5
Q ss_pred CCCCCEEEEEeCC----------------------CeEEEEEccCCeEEEEecccCC-ceEEEEEeCCCCEEEEEeCCC
Q 017296 307 RPDSKIAATAGWD----------------------RRVRIYNYRKGSALAILKYHHA-TCNAVSFSSDCKLMASASEDS 362 (374)
Q Consensus 307 sp~~~~l~s~~~d----------------------g~v~iwd~~~~~~~~~~~~h~~-~v~~v~~sp~~~~las~s~D~ 362 (374)
..++++.+.|+.+ ..+.+||..+.+ ...+...+. .-...+..-++++++.|+.+.
T Consensus 255 ~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~-W~~~~~lp~~~~~~~~~~~~~~iyv~GG~~~ 332 (346)
T TIGR03547 255 ISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGK-WSKVGKLPQGLAYGVSVSWNNGVLLIGGENS 332 (346)
T ss_pred EECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCc-ccccCCCCCCceeeEEEEcCCEEEEEeccCC
Confidence 3477888888864 146788876543 211211111 112223445888888887664
No 482
>KOG3611 consensus Semaphorins [Signal transduction mechanisms]
Probab=20.65 E-value=7.8e+02 Score=25.38 Aligned_cols=68 Identities=13% Similarity=0.061 Sum_probs=0.0
Q ss_pred CCCeEEEEEC----CCCCE--EEEEeCCCeEEEEEccCCe-------EEEEec--ccCCceEEEEEeCCCCEEEEEeCCC
Q 017296 298 RPGISGTSIR----PDSKI--AATAGWDRRVRIYNYRKGS-------ALAILK--YHHATCNAVSFSSDCKLMASASEDS 362 (374)
Q Consensus 298 ~~~v~~~~~s----p~~~~--l~s~~~dg~v~iwd~~~~~-------~~~~~~--~h~~~v~~v~~sp~~~~las~s~D~ 362 (374)
....+.+++. +++.| |..|+.+|+| ++=+..++ .+..++ -+.++|..|.+++....|..|+.++
T Consensus 407 ~~~~t~I~Vd~~~~~~~~ydVlflGTd~G~v-lKvV~~~~~~~~~~~llEElqvf~~~~pI~~m~Ls~~~~~LyVgs~~g 485 (737)
T KOG3611|consen 407 DYRLTQIVVDRVAGLDGNYDVLFLGTDAGTV-LKVVSPGKESGKSNVLLEELQVFPDAEPIRSMQLSSKRGSLYVGSRSG 485 (737)
T ss_pred cceEEEEEEEEecCCCCcEEEEEEecCCCeE-EEEEecCCccCccceeEEEEeecCCCCceeEEEecccCCeEEEEccCc
Q ss_pred cEEE
Q 017296 363 TVAL 366 (374)
Q Consensus 363 ~v~~ 366 (374)
.+++
T Consensus 486 V~qv 489 (737)
T KOG3611|consen 486 VVQV 489 (737)
T ss_pred EEEe
Done!