Query 017298
Match_columns 374
No_of_seqs 126 out of 468
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 07:20:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017298.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017298hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2864 Nuclear division RFT1 100.0 1.9E-58 4.2E-63 434.4 36.3 364 6-374 4-383 (530)
2 PF04506 Rft-1: Rft protein; 100.0 3.1E-57 6.8E-62 454.7 31.7 360 11-374 2-403 (549)
3 PRK10459 colanic acid exporter 100.0 4.1E-35 8.9E-40 295.8 31.9 336 7-370 2-338 (492)
4 COG2244 RfbX Membrane protein 99.9 2.7E-25 5.9E-30 223.5 27.1 343 7-371 3-346 (480)
5 PRK15099 O-antigen translocase 99.9 1.1E-23 2.5E-28 208.2 31.4 336 11-365 2-340 (416)
6 TIGR02900 spore_V_B stage V sp 99.9 2E-23 4.4E-28 210.1 30.0 350 13-372 2-367 (488)
7 TIGR01695 mviN integral membra 99.9 1.1E-21 2.5E-26 198.2 33.0 345 11-372 1-363 (502)
8 PF01943 Polysacc_synt: Polysa 99.9 9E-21 2E-25 175.3 27.7 269 13-300 2-272 (273)
9 PF13440 Polysacc_synt_3: Poly 99.8 2.4E-17 5.1E-22 151.0 26.0 249 28-300 2-251 (251)
10 TIGR00797 matE putative efflux 99.7 8.7E-14 1.9E-18 133.6 30.6 316 20-346 3-325 (342)
11 PF03023 MVIN: MviN-like prote 99.5 7.1E-11 1.5E-15 118.2 31.6 263 101-373 66-339 (451)
12 PRK00187 multidrug efflux prot 99.3 4.3E-09 9.2E-14 105.8 32.5 347 10-372 10-376 (464)
13 PRK01766 multidrug efflux prot 99.3 3.2E-09 7E-14 106.3 31.3 348 12-371 14-373 (456)
14 PRK09575 vmrA multidrug efflux 99.3 6.1E-09 1.3E-13 104.4 31.7 354 7-372 9-371 (453)
15 COG0728 MviN Uncharacterized m 99.3 4.5E-08 9.8E-13 98.0 35.1 348 7-371 4-371 (518)
16 COG0534 NorM Na+-driven multid 99.2 9.2E-08 2E-12 95.9 30.7 349 8-372 15-376 (455)
17 PRK10367 DNA-damage-inducible 99.0 9E-07 1.9E-11 88.5 32.2 324 9-346 8-341 (441)
18 PRK10189 MATE family multidrug 99.0 1.9E-06 4.2E-11 87.0 32.6 341 16-372 35-394 (478)
19 PRK01766 multidrug efflux prot 98.0 4.4E-05 9.6E-10 76.5 10.9 137 231-372 11-147 (456)
20 TIGR00797 matE putative efflux 97.9 6.2E-05 1.4E-09 72.1 10.1 128 240-372 1-128 (342)
21 PRK09575 vmrA multidrug efflux 97.8 0.00018 3.9E-09 72.2 11.8 137 231-371 11-147 (453)
22 PRK10189 MATE family multidrug 97.7 0.00019 4.2E-09 72.5 9.9 135 230-371 27-165 (478)
23 PRK10367 DNA-damage-inducible 97.5 0.00092 2E-08 66.9 11.8 136 232-371 9-144 (441)
24 PF01554 MatE: MatE; InterPro 97.5 0.0001 2.2E-09 62.6 3.9 127 240-371 1-127 (162)
25 TIGR02900 spore_V_B stage V sp 97.3 0.0018 3.9E-08 65.2 11.4 128 237-371 4-131 (488)
26 COG0534 NorM Na+-driven multid 97.3 0.0022 4.8E-08 64.4 11.7 137 230-371 15-151 (455)
27 PRK00187 multidrug efflux prot 97.2 0.0029 6.3E-08 63.7 11.2 132 231-371 9-143 (464)
28 PRK15099 O-antigen translocase 97.1 0.19 4E-06 49.7 22.5 188 10-205 215-410 (416)
29 PRK10459 colanic acid exporter 96.8 0.22 4.8E-06 50.2 20.9 177 14-201 211-395 (492)
30 TIGR01695 mviN integral membra 96.6 0.93 2E-05 45.7 23.7 159 12-176 225-397 (502)
31 COG2244 RfbX Membrane protein 96.3 0.41 8.8E-06 48.1 19.0 164 12-177 215-382 (480)
32 PF01554 MatE: MatE; InterPro 95.1 0.054 1.2E-06 45.6 5.9 139 20-164 3-150 (162)
33 COG0728 MviN Uncharacterized m 95.0 0.64 1.4E-05 47.2 14.1 137 232-371 7-148 (518)
34 PF07260 ANKH: Progressive ank 94.7 3.9 8.5E-05 38.7 21.7 163 127-300 130-306 (345)
35 PF03023 MVIN: MviN-like prote 94.2 6.9 0.00015 39.2 21.0 192 8-205 196-397 (451)
36 PF13440 Polysacc_synt_3: Poly 88.6 2.6 5.6E-05 37.8 8.5 37 256-292 8-44 (251)
37 PF01943 Polysacc_synt: Polysa 87.1 5.3 0.00012 36.0 9.8 64 238-301 5-68 (273)
38 PF14667 Polysacc_synt_C: Poly 82.9 24 0.00052 28.7 11.5 69 129-201 2-70 (146)
39 PF06123 CreD: Inner membrane 77.1 53 0.0011 32.8 12.8 60 4-64 286-346 (430)
40 PRK11715 inner membrane protei 67.9 1.1E+02 0.0023 30.7 12.5 59 5-64 293-352 (436)
41 KOG1347 Uncharacterized membra 62.3 47 0.001 33.6 9.1 112 232-348 28-139 (473)
42 COG4452 CreD Inner membrane pr 51.5 1.7E+02 0.0037 28.6 10.1 54 10-64 292-346 (443)
43 PF04506 Rft-1: Rft protein; 41.9 4.2E+02 0.009 27.5 16.8 29 27-55 270-300 (549)
44 PF07260 ANKH: Progressive ank 22.0 7.2E+02 0.016 23.9 10.5 132 232-373 11-146 (345)
No 1
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.9e-58 Score=434.38 Aligned_cols=364 Identities=40% Similarity=0.626 Sum_probs=325.4
Q ss_pred CccchhhhhHHHHHHHHHHHHhHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCccch
Q 017298 6 VDHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASRE 85 (374)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~r~i~fi~~~ilaRlL~P~~fGlvai~l~~~~~~~~~ls~~g~~~alir~~~~~~~~~~~ 85 (374)
+++=.+..+|+..++.+|+..|++||+.|..+.|.++||.+|++++.+++++++++|++||.+|.|.+|.++..+|
T Consensus 4 ~~vL~ss~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~sTiLFlsREair~A~l~~gs~~~d---- 79 (530)
T KOG2864|consen 4 DSVLESSFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQSTILFLSREAIRLAELRIGSEPAD---- 79 (530)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCc----
Confidence 4455667789999999999999999999999999999999999999999999999999999999999998766543
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---c-CCcchhHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhhh
Q 017298 86 ENAAKLLKVAWLTLPLGIFITIGACFFVLWWQGL---S-YSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVV 161 (374)
Q Consensus 86 ~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~---~-~~~~~~~~l~~~~l~~~i~~l~~p~~~~~~r~l~f~~~~~~ 161 (374)
++.+..|..|++.+++...++.++.++..|... . +.+++.+++.+.++++++|.+.||.+...|..++++.++..
T Consensus 80 -~~te~~n~~wlS~~L~~~i~~~~i~~wl~~~~s~d~i~~~p~y~~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~~~~i~ 158 (530)
T KOG2864|consen 80 -TWTEFINLLWLSVPLQTAINVACIYFWLGFLSSSDEISYSPLYAFAIFIIGLSIVVELLSEPLYIVSQCGLKVQLRAIA 158 (530)
T ss_pred -cHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhccchhhcCchHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 677889999999999999998877665555321 1 45567899999999999999999999999999999999999
Q ss_pred hhhHHHHhHHHHhhhhhcccCcchhHHHHHHHHHHHHHHHHH-HHHHHhhhc-------ccccCcccccccCC--ccccc
Q 017298 162 ETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLG-YWGYFLLFG-------AFKTSDLFPFRLGN--MMSYD 231 (374)
Q Consensus 162 ~~~~~~~~~~~~i~l~~~~~~~~~v~a~~~~qi~~~~~~~~~-~~~~~~~~~-------~~~~~~~~p~~~~~--~~~~~ 231 (374)
|.++.++++.+..+..+..++.+++.+|+.+|++++++.+++ ||.|++.++ ..+.++++|+...+ ...++
T Consensus 159 e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~~~r~Sdllpk~~~n~~~~ffd 238 (530)
T KOG2864|consen 159 EGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEPFSRFSDLLPKVSENERGIFFD 238 (530)
T ss_pred hHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccchhhhhhhccCCCCCCcccccc
Confidence 999999999998887777777799999999999999988874 565555554 22344677887554 45678
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhh--ccCCccchHHHHHhhhhhhHHHHhhhhhhhhhHHHHHHHhcCCCchhh
Q 017298 232 KQLANMCTLFTFQSFRKLLLQEGEKLVLVW--LDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKS 309 (374)
Q Consensus 232 ~~l~~f~~~l~~~si~~~~l~~~D~lvig~--~~~~~~~G~Y~~a~~l~sl~~r~i~~pi~~~~~p~fs~~~~~~~~~~~ 309 (374)
++..+..+.++.|+++||++|||||+|++. .++..|||.|++++|+||+++|++++||||+++.+|+|..+++++||.
T Consensus 239 ~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~ 318 (530)
T KOG2864|consen 239 NDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENV 318 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhH
Confidence 999999999999999999999999999994 457779999999999999999999999999999999999999888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhcCCcCCCchHHHHHHHHHHHHHhhcCCC
Q 017298 310 KKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMNEL 374 (374)
Q Consensus 310 ~~~~~~~~~~l~~~~~l~~~~~~~~~~~a~~lv~ll~G~~w~~~~~~~il~~~~~~~~~~~~Ngi 374 (374)
++..+.+..++|.+.++|+.++.||++|++.++.+++|+||++++.|.++|+||.|+|++|+|||
T Consensus 319 k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGi 383 (530)
T KOG2864|consen 319 KKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGI 383 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccH
Confidence 99999999999999999999999999999999999999999999888999999999999999996
No 2
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=100.00 E-value=3.1e-57 Score=454.65 Aligned_cols=360 Identities=39% Similarity=0.633 Sum_probs=295.4
Q ss_pred hhhhHHHHHHHHHHHHhHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCccchhhHHH
Q 017298 11 SLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAK 90 (374)
Q Consensus 11 ~~~~~~~~~~~~~~~~r~i~fi~~~ilaRlL~P~~fGlvai~l~~~~~~~~~ls~~g~~~alir~~~~~~~~~~~~~~~~ 90 (374)
+..+|+.++++.|+++|++||+.|+++.|.++||.+|+.+++++++.+|++|+||||+|+|++|+++++.+ +.++++
T Consensus 2 ss~~gas~li~lQl~sRllTFvlN~lllR~lsp~ilGi~nv~LeLl~sTILFlSRE~fR~A~lR~~~~~~~---~~~~~~ 78 (549)
T PF04506_consen 2 SSAKGASFLILLQLLSRLLTFVLNQLLLRFLSPEILGIANVQLELLYSTILFLSREAFRRACLRQPSSSID---KSNWAQ 78 (549)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccC---cccHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999998776522 224555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------Hhhccc-----CCcch-hHHHHHHHHHHHHHHhhhHHHHHHHhh
Q 017298 91 LLKVAWLTLPLGIFITIGACFFVL------------WWQGLS-----YSNPY-AQAIFINGFACVLELLAEPLYILSQNL 152 (374)
Q Consensus 91 ~~~~~~~~i~~g~~~~~~~~~~~~------------~~~~~~-----~~~~~-~~~l~~~~l~~~i~~l~~p~~~~~~r~ 152 (374)
..|..|.+.+++..+.+.+..+.. .+.... ..+|+ .+.+.++++++++|.+.||.+.+.|.+
T Consensus 79 ~~n~~wls~~lq~vvn~~~~~I~l~~igi~~~~~~~~~~~~~~~~~~~~~p~~~~~v~l~~~s~~iELlsEP~~il~Q~~ 158 (549)
T PF04506_consen 79 SINLLWLSVPLQAVVNLICSYIWLAWIGIPLSILLSQYQYASISNAFVIEPYFEPSVFLYGLSAFIELLSEPLYILAQQM 158 (549)
T ss_pred hhhcccccCcchhheehhHHHHhHhhccccHHHHHHHHHhhcchhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 666677666655444432211111 111111 22354 578899999999999999999999999
Q ss_pred hhhhhhhhhhhhHHHHhHHHHhhhhhcc--cC-----------cchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcc
Q 017298 153 LLLRLRLVVETVATFSRCFTMCILIVKQ--YE-----------MEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDL 219 (374)
Q Consensus 153 l~f~~~~~~~~~~~~~~~~~~i~l~~~~--~~-----------~~~v~a~~~~qi~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (374)
++++.|+++|..+.+++|+++++++... .+ ..++.+|+.+|+.+++..+..|... ...|..+.++.
T Consensus 159 l~~~~Rv~~E~~A~~~k~i~t~~~v~~~~~~~~~~~~~~~~~~~~~~l~Falgq~~ys~~l~~~y~~~-~~~~~~~~s~~ 237 (549)
T PF04506_consen 159 LFFKLRVKAESLAVFAKCIVTFALVVLAERSGYGFFYFLSGQEGLAILAFALGQLAYSITLFFCYYWM-YFFPFKSFSDL 237 (549)
T ss_pred hhhheeeEechHHHHHHHHHHHHHHHHHHhcccceeeeeccchhHHHHHHHHHHHHHHHHHHhhHHhh-ccCcccchhhc
Confidence 9999999999999999999998875432 11 1357899999999998776665432 22332222344
Q ss_pred cccccC---CcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh--ccCCccchHHHHHhhhhhhHHHHhhhhhhhhhH
Q 017298 220 FPFRLG---NMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVW--LDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSY 294 (374)
Q Consensus 220 ~p~~~~---~~~~~~~~l~~f~~~l~~~si~~~~l~~~D~lvig~--~~~~~~~G~Y~~a~~l~sl~~r~i~~pi~~~~~ 294 (374)
+|+... +..++|+++++..+.++.|+++||++|||||+++.. +.+.+|||.|++++|+||+++|++++||||+++
T Consensus 238 lp~i~~~~~~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~ 317 (549)
T PF04506_consen 238 LPKISSGNPKSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSR 317 (549)
T ss_pred cccccccccccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHH
Confidence 555432 355688999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCch------hhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhcCCcCCCchHHHHHHHHHHHHH
Q 017298 295 ATFARSASGQYPQ------KSKKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVV 368 (374)
Q Consensus 295 p~fs~~~~~~~~~------~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~a~~lv~ll~G~~w~~~~~~~il~~~~~~~~~ 368 (374)
.+|+|..+++++. +.++..+.+..++|...++|+.+++|||++++.++++++|+||.+++.+.+|++||+|+|+
T Consensus 318 ~~Fsk~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~ 397 (549)
T PF04506_consen 318 LYFSKLLSRDNSKKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPF 397 (549)
T ss_pred HHHHHHhcccCchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHH
Confidence 9999997765432 2355667899999999999999999999999999999999999998888999999999999
Q ss_pred hhcCCC
Q 017298 369 LAMNEL 374 (374)
Q Consensus 369 ~~~Ngi 374 (374)
||+|||
T Consensus 398 la~NGi 403 (549)
T PF04506_consen 398 LAINGI 403 (549)
T ss_pred HHHccH
Confidence 999996
No 3
>PRK10459 colanic acid exporter; Provisional
Probab=100.00 E-value=4.1e-35 Score=295.83 Aligned_cols=336 Identities=14% Similarity=0.128 Sum_probs=263.9
Q ss_pred ccchhhhhHHHHHHHHHHHHhHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCccchh
Q 017298 7 DHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREE 86 (374)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~r~i~fi~~~ilaRlL~P~~fGlvai~l~~~~~~~~~ls~~g~~~alir~~~~~~~~~~~~ 86 (374)
+.++|+.||+.|+.++++.+++++|+++++++|+|+|||||++++..++.. ....+++.|+.++++|+++++++
T Consensus 2 ~~~~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~-~~~~~~~~Gl~~aii~~~~~~~~----- 75 (492)
T PRK10459 2 SLREKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIG-FADTLSDMGIGASIIQRQDISHL----- 75 (492)
T ss_pred ChHHHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHH-HHHHHHHcCHHHHHHhcccCCHH-----
Confidence 568899999999999999999999999999999999999999999776654 44568899999999987543321
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcch-hHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhhhhhhH
Q 017298 87 NAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPY-AQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVA 165 (374)
Q Consensus 87 ~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~l~~~i~~l~~p~~~~~~r~l~f~~~~~~~~~~ 165 (374)
+.+ +..|+++..|+..+++...+.+.... .+++|. ...+.++++...+..+.+.....+||+++||.....|...
T Consensus 76 ~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~~~ 151 (492)
T PRK10459 76 QLS---TLYWLNVGLGIVVFVLVFLLSPLIAD-FYHNPELAPLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEISA 151 (492)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHH-HcCChhhHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHH
Confidence 222 24566666676666555544443332 355554 4667788888888888888888999999999999999999
Q ss_pred HHHhHHHHhhhhhcccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcccccccCCcccccHHHHHHHHHHHHHH
Q 017298 166 TFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQS 245 (374)
Q Consensus 166 ~~~~~~~~i~l~~~~~~~~~v~a~~~~qi~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~f~~~l~~~s 245 (374)
.+...+.++.++.. + +++|+++.++++.+++..+.++.... +++.|+... +....|++++|+.|++.++
T Consensus 152 ~i~~~~~~i~~~~~--~-~g~~~l~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~-~~~~~k~ll~~~~~~~~~~ 220 (492)
T PRK10459 152 VVAGFTFAVVSAFF--W-PGALAAILGYLVNSSVRTLLFGYFGR-------KIYRPALHF-SLASVKPNLSFGAWQTAER 220 (492)
T ss_pred HHHHHHHHHHHHHH--C-CcHHHHHHHHHHHHHHHHHHHHHHhc-------ccCCcccee-cHHHHHHHHhhhHHHHHHH
Confidence 88887776665333 3 67899999999987665543332111 122333211 1123489999999999999
Q ss_pred HHHHHHhhhhhhhhhhccCCccchHHHHHhhhhhhHHHHhhhhhhhhhHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHH
Q 017298 246 FRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLL 325 (374)
Q Consensus 246 i~~~~l~~~D~lvig~~~~~~~~G~Y~~a~~l~sl~~r~i~~pi~~~~~p~fs~~~~~~~~~~~~~~~~~~~~~l~~~~~ 325 (374)
+..++.++.|++++|++.+++++|+|+.|+++.+++...+..++..+.+|.+++.++| .++.++.+++.++....
T Consensus 221 ~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~~~~-----~~~~~~~~~~~~~~~~~ 295 (492)
T PRK10459 221 IINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKIQDD-----TEKLRVGFLKLLSVLGI 295 (492)
T ss_pred HHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcCC-----HHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888888999999999997432 35566789999999999
Q ss_pred HHHHHHHhcccchHHHHHHHhcCCcCCCchHHHHHHHHHHHHHhh
Q 017298 326 IGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLA 370 (374)
Q Consensus 326 l~~~~~~~~~~~a~~lv~ll~G~~w~~~~~~~il~~~~~~~~~~~ 370 (374)
+++|+..+....+++++.+++||+|.++ . +++++++.+..+.+
T Consensus 296 ~~~p~~~~l~~~a~~ii~ll~g~~~~~a-~-~~l~il~~~~~~~~ 338 (492)
T PRK10459 296 INFPLLLGLMVVSNNFVPLVFGEKWNSA-I-PILQLLCIVGLLRS 338 (492)
T ss_pred HHHHHHHHHHHHhHHHHHHhcChhHHhH-H-HHHHHHHHHHHHHH
Confidence 9999999999999999999999999887 4 37777777555443
No 4
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.94 E-value=2.7e-25 Score=223.52 Aligned_cols=343 Identities=17% Similarity=0.136 Sum_probs=235.8
Q ss_pred ccchhhhhHHHHHHHHHHHHhHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCccchh
Q 017298 7 DHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREE 86 (374)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~r~i~fi~~~ilaRlL~P~~fGlvai~l~~~~~~~~~ls~~g~~~alir~~~~~~~~~~~~ 86 (374)
+..++..|++.|...+++.+++++|+..++++|.++|||||++++..++.... ..+++.|+..++.|+...+++++++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~-~~i~~~G~~~ai~r~ia~~~~~~~~~ 81 (480)
T COG2244 3 SLKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLF-SILADFGLPAAITREIAEYREKGEYL 81 (480)
T ss_pred hHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHH-HHHHHcCCcHHHHHHHHHhhcccHHH
Confidence 44567889999999999999999999999999999999999999988776544 45778999999999755443322211
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcchhHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhhhhhhH-
Q 017298 87 NAAKLLKVAWLTLPLGIFITIGACFFVLWWQGLSYSNPYAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVA- 165 (374)
Q Consensus 87 ~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~p~~~~~~r~l~f~~~~~~~~~~- 165 (374)
..... ..-..+...+....+.... ...... .++.....+...++...+...........|++.+++..+......
T Consensus 82 ~~~~~--~~~~~l~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (480)
T COG2244 82 LLILL--SVLLLLLLALILLLLLLLI-AYLLAP-IDPVLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALSIVSSI 157 (480)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHH-HHHhcc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHH
Confidence 11111 0101111111111111110 111111 112345677778888888888888888899999998777763322
Q ss_pred HHHhHHHHhhhhhcccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcccccccCCcccccHHHHHHHHHHHHHH
Q 017298 166 TFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQS 245 (374)
Q Consensus 166 ~~~~~~~~i~l~~~~~~~~~v~a~~~~qi~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~f~~~l~~~s 245 (374)
.+......+. ....+ .++|+.+.+.+.........++...++ ...+.... .....|+.++++.|+..++
T Consensus 158 ~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~-~~~~~~~~l~~~~p~~~~~ 226 (480)
T COG2244 158 FLLAAVFALL--FAALG-LAVWALVLGAVVSLLVLLILLGKKKRG-------LKRPILRF-SLALLKELLRFGLPLLLSS 226 (480)
T ss_pred HHHHHHHHHH--HHhhh-HHHHHHHHHHHHHHHHHHHHHHHhhhh-------ccccccCc-hhHHHHHHHHHhhHHHHHH
Confidence 1222222111 11111 467888888777654443333211110 01111100 1223489999999999999
Q ss_pred HHHHHHhhhhhhhhhhccCCccchHHHHHhhhhhhHHHHhhhhhhhhhHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHH
Q 017298 246 FRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLL 325 (374)
Q Consensus 246 i~~~~l~~~D~lvig~~~~~~~~G~Y~~a~~l~sl~~r~i~~pi~~~~~p~fs~~~~~~~~~~~~~~~~~~~~~l~~~~~ 325 (374)
+...+.++.|++++|++.++++.|.|+.+..+.+. ...+..|++.+.+|.+++..++++. +++++.+++.++....
T Consensus 227 ~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~-~~~~~~~l~~~l~P~~s~~~~~~~~---~~~~~~~~~~~~~~~~ 302 (480)
T COG2244 227 LLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSL-LLIVASALNRVLFPALSRAYAEGDR---KALKKLLRQSLKLLLL 302 (480)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHheecccccHHHHH-HHHHHHHHHHHHHHHHHHHHHcCcH---HHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999977777775 4588889999999999999877544 5555688889999999
Q ss_pred HHHHHHHhcccchHHHHHHHhcCCcCCCchHHHHHHHHHHHHHhhc
Q 017298 326 IGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAM 371 (374)
Q Consensus 326 l~~~~~~~~~~~a~~lv~ll~G~~w~~~~~~~il~~~~~~~~~~~~ 371 (374)
+++|...+....+++++.+++||+|.++ . ++++++|....+..+
T Consensus 303 ~~~p~~~~l~~~~~~~i~~~fg~~~~~~-~-~~l~il~~~~~~~~~ 346 (480)
T COG2244 303 ISIPALLGLLLLAPPIITLLFGEKYASA-A-PILQLLALAGLFLSL 346 (480)
T ss_pred HHHHHHHHHHHHHhhhheeecCCcccch-h-HHHHHHHHHHHHHHH
Confidence 9999999999999999999999999986 3 377777775544443
No 5
>PRK15099 O-antigen translocase; Provisional
Probab=99.93 E-value=1.1e-23 Score=208.19 Aligned_cols=336 Identities=11% Similarity=0.014 Sum_probs=222.4
Q ss_pred hhhhHHHHHHHHHHHHhHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCccchhhHHH
Q 017298 11 SLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAK 90 (374)
Q Consensus 11 ~~~~~~~~~~~~~~~~r~i~fi~~~ilaRlL~P~~fGlvai~l~~~~~~~~~ls~~g~~~alir~~~~~~~~~~~~~~~~ 90 (374)
+..|++.|+..+++..++++|+.+++++|+|+|||||++++...+..... .+.+.|+..+..|.-.+.+ +|+++.++
T Consensus 2 ~~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~-~~~~~G~~~a~~~~ia~~~--~~~~~~~~ 78 (416)
T PRK15099 2 SLAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLG-VLAGAGIFNGVTKYVAQYH--DQPQQLRA 78 (416)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHH-HHHcCCccceeeeeHHhcC--CCHHHHHH
Confidence 46799999999999999999999999999999999999998776654443 4556787666533211111 11224444
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHhhcccCCcc-hhHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhhhhhhHHHH
Q 017298 91 LLKVA-WLTLPLGIFITIGACFFVLWWQGLSYSNP-YAQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFS 168 (374)
Q Consensus 91 ~~~~~-~~~i~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~l~~~i~~l~~p~~~~~~r~l~f~~~~~~~~~~~~~ 168 (374)
+.+.+ ++++..|++++++...+.........+++ +.......++..+...+.+.....++...+.+..+.....+.++
T Consensus 79 ~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~~~ 158 (416)
T PRK15099 79 VVGTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDYQGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGSLI 158 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54444 56666677666665544333222123333 45566666665556666666556666666667666666666655
Q ss_pred hHHHHhhhhhcccCcc-hhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcccccccCCcccccHHHHHHHHHHHHHHHH
Q 017298 169 RCFTMCILIVKQYEME-KGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFR 247 (374)
Q Consensus 169 ~~~~~i~l~~~~~~~~-~v~a~~~~qi~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~f~~~l~~~si~ 247 (374)
+....+ +.....|.+ ..++.+++|.+..+.. .++.+ ++++ .+ ....+.+.+.+..|++++++.|...+++.
T Consensus 159 ~i~l~i-~~~~~~Gv~Ga~iat~i~~~i~~~~~--~~~~~-~~~~-~~---~~~~~~~~~~~~~k~ll~~g~p~~~~~~~ 230 (416)
T PRK15099 159 GVAAYY-LCYRLGGYEGALLGLALVPALVVLPA--GIMLI-RRGT-IP---LSYLKPSWDNGLAGQLGKFTLMALITSVT 230 (416)
T ss_pred HHHHHH-HHHHHhcchHHHHHHHHHHHHHHHHH--HHHHH-Hccc-ee---hHhhhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 544411 122222323 2355555554442221 12221 1110 00 00001111223348999999999999999
Q ss_pred HHHHhhhhhhhhhhccCCccchHHHHHhhhhhhHHHHhhhhhhhhhHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHH
Q 017298 248 KLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIG 327 (374)
Q Consensus 248 ~~~l~~~D~lvig~~~~~~~~G~Y~~a~~l~sl~~r~i~~pi~~~~~p~fs~~~~~~~~~~~~~~~~~~~~~l~~~~~l~ 327 (374)
..+.+..|+.++++..|.++.|.|+.++++.+.+...+..++.++.+|..++.. |. ++.++.+++..+....++
T Consensus 231 ~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~~---~~---~~~~~~~~~~~~~~~~~~ 304 (416)
T PRK15099 231 LPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRLT---EK---RDITREIVKALKFVLPAV 304 (416)
T ss_pred HHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---Ch---HHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998878999999999999999952 22 334456777888888888
Q ss_pred HHHHHhcccchHHHHHHHhcCCcCCCchHHHHHHHHHH
Q 017298 328 LVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLY 365 (374)
Q Consensus 328 ~~~~~~~~~~a~~lv~ll~G~~w~~~~~~~il~~~~~~ 365 (374)
++........+|+++.+++||+|.++ . +++++.+..
T Consensus 305 ~~~~~~~~l~a~~ii~l~~g~~~~~~-~-~~~~~l~~~ 340 (416)
T PRK15099 305 AAASFTVWLLRDFAIWLLFSNKFTAM-R-DLFAWQLVG 340 (416)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHH-H-HHHHHHHHH
Confidence 77777776799999999999999986 3 366665553
No 6
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.93 E-value=2e-23 Score=210.13 Aligned_cols=350 Identities=15% Similarity=0.149 Sum_probs=237.1
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCccchhhHHHHH
Q 017298 13 SRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLL 92 (374)
Q Consensus 13 ~~~~~~~~~~~~~~r~i~fi~~~ilaRlL~P~~fGlvai~l~~~~~~~~~ls~~g~~~alir~~~~~~~~~~~~~~~~~~ 92 (374)
.|++.|.+++++.+++++++.+++++|.|+|||||.+++...+.... ..+.+.|+..++.|.-.+..+++|.++.++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~-~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~ 80 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLF-ITLTTGGLPVAISKFVAEASAKNDRKNIKKIL 80 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHH-HHHHhCCcHHHHHHHHHHHHhccchhhHHHHH
Confidence 47889999999999999999999999999999999999977665433 34566888888887522211111222333443
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHhhcccCCcch-hHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhhhhhhHHHHhH
Q 017298 93 K-VAWLTLPLGIFITIGACFFVLWWQGLSYSNPY-AQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRC 170 (374)
Q Consensus 93 ~-~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~l~~~i~~l~~p~~~~~~r~l~f~~~~~~~~~~~~~~~ 170 (374)
. ..|+++..++.+++++..+.+.......+++. ...+.+++...++..+.......+|++.|+|.....+....+++.
T Consensus 81 ~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i~~~ 160 (488)
T TIGR02900 81 KVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERSLYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQIVRI 160 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHHHHH
Confidence 3 34666666776666555444443322234443 345677888888888888888889999999999999999988887
Q ss_pred HHHhhhhhcccC--c-chhHHHHHHHHHHHHHHHHHHHHHHhhhcccccC-cccccccCCcccccHHHHHHHHHHHHHHH
Q 017298 171 FTMCILIVKQYE--M-EKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTS-DLFPFRLGNMMSYDKQLANMCTLFTFQSF 246 (374)
Q Consensus 171 ~~~i~l~~~~~~--~-~~v~a~~~~qi~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~l~~f~~~l~~~si 246 (374)
...+.++....+ . +++.+...+..+...+..+..+.+.++++..+++ ...+++ ..+....|++++++.|.+.+++
T Consensus 161 ~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~l~~~~~p~~l~~~ 239 (488)
T TIGR02900 161 SVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYK-SEGKALLFDLFSVSLPLTLSRF 239 (488)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccC-cchHHHHHHHHHHHHHHHHHHH
Confidence 765554332211 1 2333333333333333222222111111100000 000000 0011234899999999999999
Q ss_pred HHHHHhhhhhhhhhhccCC---------ccchHH-HHHhhhhhhHHHHhhhhhhhhhHHHHHHHhcCCCchhhHHHHHHH
Q 017298 247 RKLLLQEGEKLVLVWLDTP---------YNQAVY-GLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSL 316 (374)
Q Consensus 247 ~~~~l~~~D~lvig~~~~~---------~~~G~Y-~~a~~l~sl~~r~i~~pi~~~~~p~fs~~~~~~~~~~~~~~~~~~ 316 (374)
..++.++.|++++|+..+. ++.|.| +++.++.+++. .+..++..+..|.+++..+++|. ++.++.+
T Consensus 240 ~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~-~~~~~l~~~~~p~~s~~~~~~~~---~~~~~~~ 315 (488)
T TIGR02900 240 IGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPA-VITSSLSTALVPDISEAMAKKNY---SSIEKRI 315 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHH-HHHHHHHHHHHHHHHHHHHcCCH---HHHHHHH
Confidence 9999999999999987642 345655 46777777774 77889999999999999876554 5566688
Q ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHhcCCcCCCchHHHHHHHHHHHHHhhcC
Q 017298 317 AEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMN 372 (374)
Q Consensus 317 ~~~l~~~~~l~~~~~~~~~~~a~~lv~ll~G~~w~~~~~~~il~~~~~~~~~~~~N 372 (374)
++.++....++.|+.+.....+|+++.++++ |.++ . +.+++++...++.+++
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~--~~~~-~-~~l~i~~~~~~~~~~~ 367 (488)
T TIGR02900 316 NQAIKISLLLGLITTVILLVIPDELGALFYG--RPDA-G-NFIRVLAPSFPFLYFS 367 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCch-H-HHHHHHHHHHHHHHHH
Confidence 8899999999999999989999999999885 4454 3 4788888876666543
No 7
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.91 E-value=1.1e-21 Score=198.20 Aligned_cols=345 Identities=13% Similarity=0.048 Sum_probs=244.1
Q ss_pred hhhhHHHHHHHHHHHHhHHHHHHHHHHHHhhCchhh-hHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCccchhhHH
Q 017298 11 SLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADY-AIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAA 89 (374)
Q Consensus 11 ~~~~~~~~~~~~~~~~r~i~fi~~~ilaRlL~P~~f-Glvai~l~~~~~~~~~ls~~g~~~alir~~~~~~~~~~~~~~~ 89 (374)
++.|++.+..++++.+|+.+|+-..+++|+++||++ |.+++...+.......+.+.|+..+++++-.+++++++ +..
T Consensus 1 ~~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~~--~~~ 78 (502)
T TIGR01695 1 SLLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKEK--EAR 78 (502)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhh--HHH
Confidence 467899999999999999999999999999999999 99999776654443445567788888874322211111 111
Q ss_pred -HHHHHHH-HHHHHHHHHHHHHHHHHHHhhcc---cCCcch----hHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhh
Q 017298 90 -KLLKVAW-LTLPLGIFITIGACFFVLWWQGL---SYSNPY----AQAIFINGFACVLELLAEPLYILSQNLLLLRLRLV 160 (374)
Q Consensus 90 -~~~~~~~-~~i~~g~~~~~~~~~~~~~~~~~---~~~~~~----~~~l~~~~l~~~i~~l~~p~~~~~~r~l~f~~~~~ 160 (374)
...+..+ ..+..++..+++..+..+..... ..+++. ...+++++++.++..+.......+|.+.++|....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 158 (502)
T TIGR01695 79 RAFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSF 158 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHH
Confidence 2223333 33233333344444333333321 123442 35678899999999998888889999999999998
Q ss_pred hhhhHHHHhHHHHhhhhhcccCcchhHHHH--HHHHHHHHHHHHHHHHHHhhhcccccCcccccccCCcccccHHHHHHH
Q 017298 161 VETVATFSRCFTMCILIVKQYEMEKGIVFA--LSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMC 238 (374)
Q Consensus 161 ~~~~~~~~~~~~~i~l~~~~~~~~~v~a~~--~~qi~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~f~ 238 (374)
.+....++..+. +.+ ...+ +++++.+ .+.++..++..+.++.+.++++ .++.|+.+. +....|++++++
T Consensus 159 ~~i~~~i~~i~~-~~~--~~~~-~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~k~~l~~~ 229 (502)
T TIGR01695 159 SPILFNIGVILS-LLF--FDWN-YGQYSLALAIGVLIGGVAQLLIQLPFLRKAG----FLLKPRFNF-RDPGLKRFLKLF 229 (502)
T ss_pred HHHHHHHHHHHH-HHH--HHcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CcccCcCCC-CChhHHHHHHHH
Confidence 888776654432 222 2222 4566655 6666666554444333222111 112232211 122348999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccCCccchHHHHHhhhhhhHHHHhhhhhhhhhHHHHHHHhcCCCchhhHHHHHHHHH
Q 017298 239 TLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAE 318 (374)
Q Consensus 239 ~~l~~~si~~~~l~~~D~lvig~~~~~~~~G~Y~~a~~l~sl~~r~i~~pi~~~~~p~fs~~~~~~~~~~~~~~~~~~~~ 318 (374)
.|...+++..++.++.|+.+ +...+.++.|.|+.++++.+++...+..++..+.+|.+++...++|. ++.++.+++
T Consensus 230 ~p~~~~~~~~~~~~~id~~~-~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~---~~~~~~~~~ 305 (502)
T TIGR01695 230 LPTTLGSSASQITLLINTAL-ASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNW---NELRDLLNQ 305 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH---HHHHHHHHH
Confidence 99999999999999999987 88889999999999999999888778889999999999999876554 556668999
Q ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHhcCC------cCCCchHHHHHHHHHHHHHhhcC
Q 017298 319 ALKLVLLIGLVFMAFGPSYSYSLVRLLYGKK------WSDGEASTALRYYCLYVVVLAMN 372 (374)
Q Consensus 319 ~l~~~~~l~~~~~~~~~~~a~~lv~ll~G~~------w~~~~~~~il~~~~~~~~~~~~N 372 (374)
.++....+++|+..+....+++++.+++|++ |.++ . ++++++|...++.+++
T Consensus 306 ~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~-~-~~l~~~~~~~~~~~~~ 363 (502)
T TIGR01695 306 GIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMT-A-TILAAYGLGLIFYSLQ 363 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHH-H-HHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999953 4444 3 5888888877766554
No 8
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.89 E-value=9e-21 Score=175.29 Aligned_cols=269 Identities=15% Similarity=0.195 Sum_probs=176.9
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCccchhhHHHHH
Q 017298 13 SRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLL 92 (374)
Q Consensus 13 ~~~~~~~~~~~~~~r~i~fi~~~ilaRlL~P~~fGlvai~l~~~~~~~~~ls~~g~~~alir~~~~~~~~~~~~~~~~~~ 92 (374)
.|+..|+..+++.+++++|+++++++|.++|||||.+++..++.. ....+.+.|++.++.|+-.+++++ ++..+...
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~-~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~ 78 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVS-LLSILADLGLSQAIVRFIAEYKDK--KELRSAYF 78 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHH-HHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHH
Confidence 588899999999999999999999999999999999999777754 445577899999999875443321 11112222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCcch-hHHHHHHHHHH-HHHHhhhHHHHHHHhhhhhhhhhhhhhhHHHHhH
Q 017298 93 KVAWLTLPLGIFITIGACFFVLWWQGLSYSNPY-AQAIFINGFAC-VLELLAEPLYILSQNLLLLRLRLVVETVATFSRC 170 (374)
Q Consensus 93 ~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~l~~-~i~~l~~p~~~~~~r~l~f~~~~~~~~~~~~~~~ 170 (374)
.... ....+..+.+.+...... ...++. .....++.+.. ++..+........+...+++.....+....+.+.
T Consensus 79 ~~~~----~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (273)
T PF01943_consen 79 SSVL----FLLLIFSLIFLLILLIAS-FFGNPSLSLILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSLLSL 153 (273)
T ss_pred HHHH----HHHHHHHHHHHHHHHHHH-HcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1121 111111111111111111 223332 22222333332 3455555555667777788888787777777777
Q ss_pred HHHhhhhhcccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcccccccCCcccccHHHHHHHHHHHHHHHHHHH
Q 017298 171 FTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLL 250 (374)
Q Consensus 171 ~~~i~l~~~~~~~~~v~a~~~~qi~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~f~~~l~~~si~~~~ 250 (374)
+..+.+.... +.++....++.+..++..+..+.+.+. .+.+++...+....|+.++++.|+..+++...+
T Consensus 154 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (273)
T PF01943_consen 154 LLILLLLFLG---SSLWGFLLGLVISSLVSLIISLFYLRR-------KLRPRFSFFSKKFFKEILRFGLPLFLSSLLSWL 223 (273)
T ss_pred HHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHcccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655543332 236666666666665544333222121 011111111123458999999999999999999
Q ss_pred HhhhhhhhhhhccCCccchHHHHHhhhhhhHHHHhhhhhhhhhHHHHHHH
Q 017298 251 LQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARS 300 (374)
Q Consensus 251 l~~~D~lvig~~~~~~~~G~Y~~a~~l~sl~~r~i~~pi~~~~~p~fs~~ 300 (374)
.++.|+++++++.|++++|.|+.++++++.+. .+..++.++.+|.++|+
T Consensus 224 ~~~~d~~ii~~~~g~~~vg~Y~~a~~l~~~~~-~~~~~~~~~~~P~~s~l 272 (273)
T PF01943_consen 224 YSQIDRLIIGYFLGPEAVGIYSVAYRLASAIS-FLLSSISTVLFPRLSRL 272 (273)
T ss_pred HHHhHHHHHHHhCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999766 66668888999999986
No 9
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.81 E-value=2.4e-17 Score=150.99 Aligned_cols=249 Identities=16% Similarity=0.242 Sum_probs=167.9
Q ss_pred HHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCccchhhHHHHHHHHHHHHHHHHHHHH
Q 017298 28 GIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLLKVAWLTLPLGIFITI 107 (374)
Q Consensus 28 ~i~fi~~~ilaRlL~P~~fGlvai~l~~~~~~~~~ls~~g~~~alir~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~ 107 (374)
+++|+..++++|.++|||||.++...++.... ..+.+.|+++.++|+.+++++ +..+...... ..++..++
T Consensus 2 ~~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~-~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~---~~~~~~~~ 72 (251)
T PF13440_consen 2 GINFLFLILLARYLGPEDFGIYALIFSIVSIL-SIVASLGLRQSLVRSAARDKQ-----DIRSLLRFSL---LVSLLLAV 72 (251)
T ss_pred hHHHHHHHHHHHHCCHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhccCHH-----HHHHHHHHHH---HHHHHHHH
Confidence 57899999999999999999999987776544 456789999999995433222 3333333332 11222222
Q ss_pred HHHHHHHHhhcccCCcch-hHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhhhhhhHHHHhHHHHhhhhhcccCcchh
Q 017298 108 GACFFVLWWQGLSYSNPY-AQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKG 186 (374)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~-~~~l~~~~l~~~i~~l~~p~~~~~~r~l~f~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~v 186 (374)
++..+...... .++++. .+.+.+.++..+.+.+.+.....++.+.|++.....+....+.+.+..+.+..... .+
T Consensus 73 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 148 (251)
T PF13440_consen 73 ILAILAILIAY-FFGDPELFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLYLGL---NL 148 (251)
T ss_pred HHHHHHHHHHH-HhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHh---hH
Confidence 22221111111 234443 45566777778888888888888899999999888888888887555444433222 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccccCcccccccCCcccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCc
Q 017298 187 IVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPY 266 (374)
Q Consensus 187 ~a~~~~qi~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~f~~~l~~~si~~~~l~~~D~lvig~~~~~~ 266 (374)
++...+..+..+...+..+...+. .|+.+. +... ++.++++.|+..+++...+.+++|+++++.+.+++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~ 217 (251)
T PF13440_consen 149 WSILLAFIISALLALLISFYLLRR---------KLRLSF-KFSW-RRLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPE 217 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc---------ccCCCc-hhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence 444444444443333322221110 111111 1112 24899999999999999999999999999977999
Q ss_pred cchHHHHHhhhhhhHHHHhhhhhhhhhHHHHHHH
Q 017298 267 NQAVYGLVDKLGSLVVRMVFLPFEESSYATFARS 300 (374)
Q Consensus 267 ~~G~Y~~a~~l~sl~~r~i~~pi~~~~~p~fs~~ 300 (374)
+.|.|+.+.++...+...+.+++.++.+|.++|.
T Consensus 218 ~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar~ 251 (251)
T PF13440_consen 218 AVGIYSVAQRLASLPASLLSSAISSVFFPKLARM 251 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999899999999999999873
No 10
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.68 E-value=8.7e-14 Score=133.60 Aligned_cols=316 Identities=17% Similarity=0.100 Sum_probs=202.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCccchhhHHHHHHHH-HHH
Q 017298 20 LATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKLLKVA-WLT 98 (374)
Q Consensus 20 ~~~~~~~r~i~fi~~~ilaRlL~P~~fGlvai~l~~~~~~~~~ls~~g~~~alir~~~~~~~~~~~~~~~~~~~~~-~~~ 98 (374)
+..++...+..++.+.++.+ +++++.|.+++...+. .....+ -.|+.++....-.+...++|.++..+..... +.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~a~~i~-~~~~~~-~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 79 (342)
T TIGR00797 3 ILANILQPLLGLVDTAFVGH-LGPVDLAAVSLGSSVF-MFLFSI-LMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA 79 (342)
T ss_pred HHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHhHHHH-HHHHHH-HHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence 45677778888777666666 6789999888864432 332333 2566666543211100001111333333333 455
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCcc-h----hHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhhhhhhHHHHhHHHH
Q 017298 99 LPLGIFITIGACFFVLWWQGLSYSNP-Y----AQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTM 173 (374)
Q Consensus 99 i~~g~~~~~~~~~~~~~~~~~~~~~~-~----~~~l~~~~l~~~i~~l~~p~~~~~~r~l~f~~~~~~~~~~~~~~~~~~ 173 (374)
...++.+++++.+...+.......++ . ...+.++++..++.++.......++.+.+++.....+....++.....
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~ 159 (342)
T TIGR00797 80 LLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILN 159 (342)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Confidence 55666666555444333332222232 2 245788888889888888877778888888988888888887777766
Q ss_pred hhhhh-cccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcccccccCCcccccHHHHHHHHHHHHHHHHHHHHh
Q 017298 174 CILIV-KQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQ 252 (374)
Q Consensus 174 i~l~~-~~~~~~~v~a~~~~qi~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~f~~~l~~~si~~~~l~ 252 (374)
+.++. ..+ .+++.+.+.+.++..++.++..+.+.+++++.+. ++.++ .+.+....|++++++.|.+.+++...+.+
T Consensus 160 ~~li~~~~g-~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~k~~~~~~~P~~~~~l~~~~~~ 236 (342)
T TIGR00797 160 YILIFGKFG-FLGIVGAALATVISYWLMFLLLLYYIKKAKKIGL-KWEGL-LKPDWEVLKRLLKLGLPIAFRVILESLSF 236 (342)
T ss_pred HHHHhcCcc-ccccHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-ccccc-cCCCHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 65543 221 0234445555555554433322222121111110 01011 11122234899999999999999999999
Q ss_pred hhhhhhhhhccCCccchHHHHHhhhhhhHHHHhhhhhhhhhHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 017298 253 EGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMA 332 (374)
Q Consensus 253 ~~D~lvig~~~~~~~~G~Y~~a~~l~sl~~r~i~~pi~~~~~p~fs~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~ 332 (374)
+.|+++++. .+.++.|.|++++++.+++. .+...+..++.|..++...++|. ++.++.+++.++....++.|+..
T Consensus 237 ~~~~~i~~~-~g~~~v~~~~~a~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 311 (342)
T TIGR00797 237 ALLALLVAR-LGSIALAAHQIALNVESLLF-MPAFGFGIAVSILVGQALGAGDP---KRAKEVARVALKLSLLLGLVLAI 311 (342)
T ss_pred HHHHHHHHH-cCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998876 57899999999999988654 66778999999999998766544 55566888899999999999888
Q ss_pred hcccchHHHHHHHh
Q 017298 333 FGPSYSYSLVRLLY 346 (374)
Q Consensus 333 ~~~~~a~~lv~ll~ 346 (374)
+....++++++++.
T Consensus 312 ~l~~~~~~i~~~~~ 325 (342)
T TIGR00797 312 ILILFREFIARLFT 325 (342)
T ss_pred HHHHHHHHHHHHhC
Confidence 88888888877654
No 11
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.50 E-value=7.1e-11 Score=118.17 Aligned_cols=263 Identities=15% Similarity=0.113 Sum_probs=183.1
Q ss_pred HHHHHHHHHHHHHHHhh---cccCCcch----hHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhhhhhhHHHHhHHHH
Q 017298 101 LGIFITIGACFFVLWWQ---GLSYSNPY----AQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTM 173 (374)
Q Consensus 101 ~g~~~~~~~~~~~~~~~---~~~~~~~~----~~~l~~~~l~~~i~~l~~p~~~~~~r~l~f~~~~~~~~~~~~~~~~~~ 173 (374)
.++.++++..++++++. .+.++++. ...++++....++.++.......+|.+-||..-.......++.-.+..
T Consensus 66 ~~~~l~~l~~lfa~~iv~~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~ 145 (451)
T PF03023_consen 66 ISLLLTLLGILFAPPIVRLLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSL 145 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHH
Confidence 34444555444444432 22343332 245788888888888888888888888888877766665554433322
Q ss_pred hhhhhcccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcccccccCCcccccHHHHHHHHHHHHHHHHHHHHhh
Q 017298 174 CILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCTLFTFQSFRKLLLQE 253 (374)
Q Consensus 174 i~l~~~~~~~~~v~a~~~~qi~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~f~~~l~~~si~~~~l~~ 253 (374)
+.. ....+...+.+++++..+.++..++....+.+ +- +.++.|.....+ ...|+.++...|.+..+...|+..-
T Consensus 146 ~~~-~~~~~~~~i~~la~g~~~g~~~~~l~~l~~~~-~~---~~~~~~~~~~~~-~~~~~~~~~~~p~~l~~~~~qi~~l 219 (451)
T PF03023_consen 146 LLL-SNSWGQENIYALAWGVLIGAIIQFLIQLPYLR-RF---GFRFRPKFDWRD-PNLKRFLKLAIPLLLSSSISQINIL 219 (451)
T ss_pred HHH-HHhcCchHHHHHHHHHHHHHHHHHHHHHHHHH-HC---CCcccccCCCCC-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 11111123667777777777665543332212 11 111223221111 1237899999999999999999999
Q ss_pred hhhhhhhhccCCccchHHHHHhhhhhhHHHHhhhhhhhhhHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 017298 254 GEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIGLVFMAF 333 (374)
Q Consensus 254 ~D~lvig~~~~~~~~G~Y~~a~~l~sl~~r~i~~pi~~~~~p~fs~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~ 333 (374)
.|+.+-+. .+......++-|.++.++|..++..++..+.+|.+||..+++|. ++.++..++.++...++.+|+.++
T Consensus 220 v~~~laS~-l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~---~~~~~~~~~~l~~~~~i~iP~~~~ 295 (451)
T PF03023_consen 220 VDRALASF-LGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDW---EEFRKTLRKALRLILLILIPASIG 295 (451)
T ss_pred HHHHHHhC-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998887 55778899999999999999999999999999999999877654 556668899999999999999999
Q ss_pred cccchHHHHHHHhcC-CcCCCc---hHHHHHHHHHHHHHhhcCC
Q 017298 334 GPSYSYSLVRLLYGK-KWSDGE---ASTALRYYCLYVVVLAMNE 373 (374)
Q Consensus 334 ~~~~a~~lv~ll~G~-~w~~~~---~~~il~~~~~~~~~~~~Ng 373 (374)
....++|++.++|.. +-.+.+ ...++++|+..+|..++|.
T Consensus 296 ~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ 339 (451)
T PF03023_consen 296 LIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALND 339 (451)
T ss_pred HHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 999999999999943 332221 3579999999999888764
No 12
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.34 E-value=4.3e-09 Score=105.83 Aligned_cols=347 Identities=14% Similarity=0.004 Sum_probs=208.6
Q ss_pred hhhhhHHHHHHHHHHHHhHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHhHHHHHHHH---hcccccCCCccchh
Q 017298 10 TSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRAC---MRADIKCDGASREE 86 (374)
Q Consensus 10 ~~~~~~~~~~~~~~~~~r~i~fi~~~ilaRlL~P~~fGlvai~l~~~~~~~~~ls~~g~~~al---ir~~~~~~~~~~~~ 86 (374)
+++.+-+.=.+++++.+.+.+++.+.++.| +++++..-+++...+...+.. +. .|+..+. +.+....++ .+
T Consensus 10 k~il~~a~P~~~~~~~~~~~~~~d~~~v~~-lg~~alAa~~i~~~i~~~~~~-~~-~gl~~~~~~i~aq~~Ga~~---~~ 83 (464)
T PRK00187 10 KAILRLAGPLIASQLAHMLMVFTDTLMMGR-LGPEALAGGGLGAASYSFVSI-FC-VGVIAAVGTLVAIRHGAGD---IE 83 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHhcCCC---hh
Confidence 445566667788999999999999999999 588877777765544332222 11 3333322 222111111 11
Q ss_pred hHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcccCCcch-----hHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhh
Q 017298 87 NAAKLLKVA-WLTLPLGIFITIGACFFVLWWQGLSYSNPY-----AQAIFINGFACVLELLAEPLYILSQNLLLLRLRLV 160 (374)
Q Consensus 87 ~~~~~~~~~-~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~l~~~i~~l~~p~~~~~~r~l~f~~~~~ 160 (374)
+..+..+.+ ++.+..++...++..+ .......+-.|+. ...+.++++..+...+.......++-.-+.+.-..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 162 (464)
T PRK00187 84 GATRLAQAGLWLAWLLALVAALLLWN-LKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMV 162 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 334444344 3444445544433322 1222222223332 24467777777777776666666676677777777
Q ss_pred hhhhHHHHhHHHHhhhhhcccC--cchh----HHHHHHHHHHHHHHHHHHHHHHhhhcccccCcccccccCCcccccHHH
Q 017298 161 VETVATFSRCFTMCILIVKQYE--MEKG----IVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQL 234 (374)
Q Consensus 161 ~~~~~~~~~~~~~i~l~~~~~~--~~~v----~a~~~~qi~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l 234 (374)
......+++.....+++.-..+ ..|+ ++.++++....+.. +.|+ .+++..+..++.....+.+....|++
T Consensus 163 ~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~k~i 238 (464)
T PRK00187 163 ISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALAL-ALYI---RRHPAYAAYPLRKGLSRPSRAALREL 238 (464)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHH-HHHH---HhcchhhhhhhhccccCCCHHHHHHH
Confidence 7777777777776665532211 1233 45555443332211 1222 22211100000000000011223789
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchHHHHHhhhhhhHHHHhhhhhhhhhHHHHHHHhcCCCchhhHHHHH
Q 017298 235 ANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGN 314 (374)
Q Consensus 235 ~~f~~~l~~~si~~~~l~~~D~lvig~~~~~~~~G~Y~~a~~l~sl~~r~i~~pi~~~~~p~fs~~~~~~~~~~~~~~~~ 314 (374)
++.+.|...+.+........|..++++ .|.++++-|+++.++.++.. .+..-+....-+.-++..-++|. ++.++
T Consensus 239 l~lg~P~~~~~~~~~~~~~i~~~~i~~-~G~~alAa~~i~~~i~~l~~-~~~~gi~~a~~~lvgq~~Ga~~~---~~~~~ 313 (464)
T PRK00187 239 WRLGLPIGGTYAVEVGLFTFAALCMGA-LGSTQLAAHQIALQIVSVAF-MVPVGLSYAVTMRVGQHYGAGRL---LEARR 313 (464)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCH---HHHHH
Confidence 999999999999999999999999998 45589999999999988644 55667888888999998876554 55556
Q ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHhcC-CcCCCc----hHHHHHHHHHHHHHhhcC
Q 017298 315 SLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGK-KWSDGE----ASTALRYYCLYVVVLAMN 372 (374)
Q Consensus 315 ~~~~~l~~~~~l~~~~~~~~~~~a~~lv~ll~G~-~w~~~~----~~~il~~~~~~~~~~~~N 372 (374)
..+..+.+...++++........+++++.++.++ +-.+.+ ...++.+.+...++.++|
T Consensus 314 ~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~ 376 (464)
T PRK00187 314 AGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQ 376 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 7787888888888777777777888999887543 211111 234777777777777654
No 13
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.34 E-value=3.2e-09 Score=106.33 Aligned_cols=348 Identities=16% Similarity=0.091 Sum_probs=200.7
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHhHHHHHHHH---h-cccccCCCccchhh
Q 017298 12 LSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRAC---M-RADIKCDGASREEN 87 (374)
Q Consensus 12 ~~~~~~~~~~~~~~~r~i~fi~~~ilaRlL~P~~fGlvai~l~~~~~~~~~ls~~g~~~al---i-r~~~~~~~~~~~~~ 87 (374)
..+=+.-.++.+......+++-+.++.| +++++.+-+++...+...... +. .|+..+. + |+-..+| .++
T Consensus 14 il~~~~P~~~~~~~~~~~~~~d~~~i~~-~g~~~laa~~~~~~~~~~~~~-~~-~g~~~a~~~~vs~~~g~~~----~~~ 86 (456)
T PRK01766 14 LLALALPILLAQVAQTAMGFVDTVMAGG-VSATDLAAVAIGTSIWLPVIL-FG-HGLLLALTPIVAQLNGAGR----RER 86 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHhcCCC----hHH
Confidence 3444556778888888888888877777 577776666665443222211 11 3333322 2 2211111 113
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcccCCcch-----hHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhhh
Q 017298 88 AAKLLKVA-WLTLPLGIFITIGACFFVLWWQGLSYSNPY-----AQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVV 161 (374)
Q Consensus 88 ~~~~~~~~-~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~l~~~i~~l~~p~~~~~~r~l~f~~~~~~ 161 (374)
..+.++.. +.++..++.++++...+..........++. ...+.++++..+...+.......+|-..+.|.-.+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 166 (456)
T PRK01766 87 IAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMVI 166 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 44444444 355555555544443332222222233332 234667777777777777766667777777877887
Q ss_pred hhhHHHHhHHHHhhhhhcccC--cchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcccccccCCcccccHHHHHHHH
Q 017298 162 ETVATFSRCFTMCILIVKQYE--MEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCT 239 (374)
Q Consensus 162 ~~~~~~~~~~~~i~l~~~~~~--~~~v~a~~~~qi~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~f~~ 239 (374)
.....+++......++....+ ..++.+.+++..+...+..+.++.+.+++...+..+......+.+....|+.++.+.
T Consensus 167 ~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~l~~ 246 (456)
T PRK01766 167 GFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLKLGL 246 (456)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHHccc
Confidence 777777777766555432111 123333333333333332222221212111000000111000001122378999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhccCCccchHHHHHhhhhhhHHHHhhhhhhhhhHHHHHHHhcCCCchhhHHHHHHHHHH
Q 017298 240 LFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEA 319 (374)
Q Consensus 240 ~l~~~si~~~~l~~~D~lvig~~~~~~~~G~Y~~a~~l~sl~~r~i~~pi~~~~~p~fs~~~~~~~~~~~~~~~~~~~~~ 319 (374)
|...+.+...+....|..+++++ |.++++.|+++.++.++.. .+...+..+.-+.-++...++|. ++.++..+..
T Consensus 247 P~~~~~~~~~~~~~~~~~~~~~~-G~~~lAa~~i~~~i~~~~~-~~~~gl~~a~~~~v~~~~Ga~~~---~~~~~~~~~~ 321 (456)
T PRK01766 247 PIGLAIFFEVSLFAVVTLLVSPL-GTVTVAAHQIALNFSSLLF-MLPLSLAMALTIRVGFELGAGRT---LDARQYAYIG 321 (456)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHc-ChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCH---HHHHHHHHHH
Confidence 99999999999999999999986 6778999999999988654 44556777777888888766554 5566688888
Q ss_pred HHHHHHHHHHHHHhcccchHHHHHHHhcCCcCCCchHHHHHHHHHHHHHhhc
Q 017298 320 LKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAM 371 (374)
Q Consensus 320 l~~~~~l~~~~~~~~~~~a~~lv~ll~G~~w~~~~~~~il~~~~~~~~~~~~ 371 (374)
+++...++++........++++..++..|.=.......++.+.+...++.++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~ 373 (456)
T PRK01766 322 LAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAI 373 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888898886543220000022466666666666554
No 14
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.31 E-value=6.1e-09 Score=104.36 Aligned_cols=354 Identities=14% Similarity=0.048 Sum_probs=211.6
Q ss_pred ccchhhhhHHHHHHHHHHHHhHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHhH--HHHHHHHhcccccCCCccc
Q 017298 7 DHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSR--EGFRRACMRADIKCDGASR 84 (374)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~r~i~fi~~~ilaRlL~P~~fGlvai~l~~~~~~~~~ls~--~g~~~alir~~~~~~~~~~ 84 (374)
++-++..+=+.=.++++....+.+++-+.++.|++++++.+-+++...+......+..- .|.. +++.+....+ |
T Consensus 9 ~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~~~~~~~~~~g~~-~lvsq~~Ga~---~ 84 (453)
T PRK09575 9 SIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGIILGIGLMVGMGTG-SLLSIKRGEG---D 84 (453)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHhcCC---C
Confidence 44555666666778889999999999999999999998888777655443222211111 1111 2332211111 1
Q ss_pred hhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcccCCcch-----hHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhh
Q 017298 85 EENAAKLLKVA-WLTLPLGIFITIGACFFVLWWQGLSYSNPY-----AQAIFINGFACVLELLAEPLYILSQNLLLLRLR 158 (374)
Q Consensus 85 ~~~~~~~~~~~-~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~l~~~i~~l~~p~~~~~~r~l~f~~~ 158 (374)
.++..+..+.. +++...++.++++...+........-.++. ...+.+++++.++..+.......++...+-+.-
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~ 164 (453)
T PRK09575 85 LEKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLA 164 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 12334443343 455555655555544433333222222321 255788888888888877776667766666767
Q ss_pred hhhhhhHHHHhHHHHhhhhhcccCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcccccccCCcccccHHHHHHH
Q 017298 159 LVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMC 238 (374)
Q Consensus 159 ~~~~~~~~~~~~~~~i~l~~~~~~~~~v~a~~~~qi~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~f~ 238 (374)
.+....+.+++......++... + +++.+-+++..+...+..+..+.+..++.. . .++..+..+.+....|+.++.+
T Consensus 165 ~~~~~~~~~~ni~l~~~li~~~-~-~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~il~ig 240 (453)
T PRK09575 165 TGLMVIGALINIVLDYLFIGWL-D-WGLTGAAIATALAQLVVTVLGLGYFFSSRA-N-IRLTLKELRFNWSLAPKIVLLG 240 (453)
T ss_pred HHHHHHHHHHHHHhhHHHHHhC-C-chhHHHHHHHHHHHHHHHHHHHHHHHCCCc-e-eEEeeccCCcCHHHHHHHHHhC
Confidence 7777777777766665554322 2 344333333333332222221111111100 0 0010000000112237789999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccCCccchHHHHHhhhhhhHHHHhhhhhhhhhHHHHHHHhcCCCchhhHHHHHHHHH
Q 017298 239 TLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAE 318 (374)
Q Consensus 239 ~~l~~~si~~~~l~~~D~lvig~~~~~~~~G~Y~~a~~l~sl~~r~i~~pi~~~~~p~fs~~~~~~~~~~~~~~~~~~~~ 318 (374)
.|...+.....+..-.-..+++++.+.++++.|+++.++.++.. .....+....-|.-++..-.+|. ++.++.++.
T Consensus 241 ~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~~~-~~~~gi~~a~~~lvg~~~Ga~~~---~~~~~~~~~ 316 (453)
T PRK09575 241 SSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVLYY-LVAEGIAEGMQPPVSYYFGARQY---DNIKKLLKL 316 (453)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHhcCCCh---HHHHHHHHH
Confidence 99888887776766666667777766678999999999887644 66678889999999999877655 566668888
Q ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHhcCC-cCCCchHHHHHHHHHHHHHhhcC
Q 017298 319 ALKLVLLIGLVFMAFGPSYSYSLVRLLYGKK-WSDGEASTALRYYCLYVVVLAMN 372 (374)
Q Consensus 319 ~l~~~~~l~~~~~~~~~~~a~~lv~ll~G~~-w~~~~~~~il~~~~~~~~~~~~N 372 (374)
.+++....+++........+++++.++-.++ =.-+.....+.+.+...|+.+++
T Consensus 317 ~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~ 371 (453)
T PRK09575 317 AMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFL 371 (453)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988888888888888989888765321 00011235677777777766653
No 15
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.28 E-value=4.5e-08 Score=98.00 Aligned_cols=348 Identities=14% Similarity=0.040 Sum_probs=217.0
Q ss_pred ccchhhhhHHHHHHHHHHHHhHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHH----HHhHHHHHHHHhcc---cccC
Q 017298 7 DHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVL----FLSREGFRRACMRA---DIKC 79 (374)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~r~i~fi~~~ilaRlL~P~~fGlvai~l~~~~~~~~----~ls~~g~~~alir~---~~~~ 79 (374)
....++.|+..+...+.+++|+.+|+=-+++++.++.. ..+-+..+-.-+-+ .+.+..+.+|.+-. .+.+
T Consensus 4 ~~~~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~---~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~ 80 (518)
T COG0728 4 KSKMSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAG---AAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKK 80 (518)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc---hHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHc
Confidence 34456778888899999999999999999999999983 33333222111112 22344456665521 1111
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cccCCcchh----HHHHHHHHHHHHHHhhhHHHHHHHh
Q 017298 80 DGASREENAAKLLKVAWLTLPLGIFITIGACFFVLWWQ----GLSYSNPYA----QAIFINGFACVLELLAEPLYILSQN 151 (374)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~----~~~~~~~~~----~~l~~~~l~~~i~~l~~p~~~~~~r 151 (374)
+.++...++.+.+.... ..+.+.++++..+..++.. ...++++.. ..++++..-.++.++.......++.
T Consensus 81 ~~~~~~~~f~~~v~~~l--~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs 158 (518)
T COG0728 81 EGEEAARFFSRLVTGLL--TLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNS 158 (518)
T ss_pred chhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11112223444333222 1223344444444444443 122233321 2346666666666666666667777
Q ss_pred hhhhhhhhhhhhhHHHHhHHHHhhhhhcccCcch-hHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcccccccCCcccc
Q 017298 152 LLLLRLRLVVETVATFSRCFTMCILIVKQYEMEK-GIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSY 230 (374)
Q Consensus 152 ~l~f~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~-v~a~~~~qi~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 230 (374)
+.+|..-.......++.-....+ +..+..+. .++++++-++.++..++..+...+..+ -...|++..++. .
T Consensus 159 ~~~F~~~a~aPvl~Nv~~I~~~l---~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g----~~~~p~~~~~~~-~ 230 (518)
T COG0728 159 RNRFFIPAFAPVLLNVSVIGLAL---FLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAG----LLIKPRFGFKDP-G 230 (518)
T ss_pred cCeechhhhhHHHHHHHHHHHHH---HhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcc----cccCCCCCCCch-h
Confidence 77776555555444444332211 12222233 577788888888777665443322211 112333222111 2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchHHHHHhhhhhhHHHHhhhhhhhhhHHHHHHHhcCCCchhhH
Q 017298 231 DKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSK 310 (374)
Q Consensus 231 ~~~l~~f~~~l~~~si~~~~l~~~D~lvig~~~~~~~~G~Y~~a~~l~sl~~r~i~~pi~~~~~p~fs~~~~~~~~~~~~ 310 (374)
.|+....-.|.+...-+.|++.-.|+.+-+.. .......++-|.++-++|..++--.+..+.+|.+||..+++|. +
T Consensus 231 lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l-~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~---~ 306 (518)
T COG0728 231 LKRFLKLMLPALLGVSISQINLLIDTAIASFL-AEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDW---P 306 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCCh---H
Confidence 26677777888888889999999998765554 4555677888999999999999999999999999999887655 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhcCCcCCCc----hHHHHHHHHHHHHHhhc
Q 017298 311 KIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGE----ASTALRYYCLYVVVLAM 371 (374)
Q Consensus 311 ~~~~~~~~~l~~~~~l~~~~~~~~~~~a~~lv~ll~G~~w~~~~----~~~il~~~~~~~~~~~~ 371 (374)
+.++.....+|...++++|..++....|++++.++|...=-+.+ ..+++..|..-+|.+++
T Consensus 307 ~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L 371 (518)
T COG0728 307 EFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFAL 371 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHH
Confidence 45557888999999999999999999999999999976432221 24788888886665554
No 16
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.16 E-value=9.2e-08 Score=95.86 Aligned_cols=349 Identities=16% Similarity=0.092 Sum_probs=225.3
Q ss_pred cchhhhhHHHHHHHHHHHHhHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHh--HHHHHHHHhcccccCCCccch
Q 017298 8 HSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLS--REGFRRACMRADIKCDGASRE 85 (374)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~r~i~fi~~~ilaRlL~P~~fGlvai~l~~~~~~~~~ls--~~g~~~alir~~~~~~~~~~~ 85 (374)
..|++.+=+.=.+++++.+...+++=+.+..|+. +|+-+-+++...+......+.. ..|...-.-|.-..+| .
T Consensus 15 ~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~-~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~----~ 89 (455)
T COG0534 15 ILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLG-AEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGD----R 89 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCc----h
Confidence 3344445555567899999999999999999997 8888888887666533332222 2222222223311111 1
Q ss_pred hhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcccCCcc----h-hHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhh
Q 017298 86 ENAAKLLKV-AWLTLPLGIFITIGACFFVLWWQGLSYSNP----Y-AQAIFINGFACVLELLAEPLYILSQNLLLLRLRL 159 (374)
Q Consensus 86 ~~~~~~~~~-~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~----~-~~~l~~~~l~~~i~~l~~p~~~~~~r~l~f~~~~ 159 (374)
++..+.... .|+++.+|+.+.++............-.++ . ..-+.+..++.+...+.......++-+-|.|.-.
T Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m 169 (455)
T COG0534 90 KKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPM 169 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhH
Confidence 244444444 456667776665554433322222212222 1 2457888999999999888888888888999999
Q ss_pred hhhhhHHHHhHHHHhhhhhcccCcchh----HHHHHHHHHHHHHHHHHHHHHHhhhcccccCcccccc-cCCcccccHHH
Q 017298 160 VVETVATFSRCFTMCILIVKQYEMEKG----IVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFR-LGNMMSYDKQL 234 (374)
Q Consensus 160 ~~~~~~~~~~~~~~i~l~~~~~~~~~v----~a~~~~qi~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~l 234 (374)
+....+.+...+.-..+++...+.+|+ ||.++++.+..+..+. +...++.. ...+..+ .+.+....|+.
T Consensus 170 ~~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~~~~i 243 (455)
T COG0534 170 YILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLI----YLLRKKRL--LSLFKKKLLKPDRKLLKEI 243 (455)
T ss_pred HHHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHH----HHHhcchh--hhhhhhhccCCCHHHHHHH
Confidence 999999999999888876653221333 5555666555433322 11111100 0001000 01122334799
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchHHHHHhhhhhhHHHHhhhhhhhhhHHHHHHHhcCCCchhhHHHHH
Q 017298 235 ANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGN 314 (374)
Q Consensus 235 ~~f~~~l~~~si~~~~l~~~D~lvig~~~~~~~~G~Y~~a~~l~sl~~r~i~~pi~~~~~p~fs~~~~~~~~~~~~~~~~ 314 (374)
++.+.|...+++........-..+++++. .+.++-|+++.++.++.. .....+..+.-+.-.+..-.+|. ++.++
T Consensus 244 ~~lG~p~~~~~~~~~~~~~~~~~~~~~~G-~~~lAa~~i~~~i~~~~~-~~~~gi~~a~~~lvG~~~Ga~~~---~~a~~ 318 (455)
T COG0534 244 LRLGLPIFLESLSESLGFLLLTLFVARLG-TVALAAYGIALRIASFIF-MPPFGIAQAVTILVGQNLGAGNY---KRARR 318 (455)
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCH---HHHHH
Confidence 99999999999988888888888888776 888999999999988655 55557888888888888766555 55666
Q ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHhcCCcCCCchHHHHHHHHHHHHHhhcC
Q 017298 315 SLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMN 372 (374)
Q Consensus 315 ~~~~~l~~~~~l~~~~~~~~~~~a~~lv~ll~G~~w~~~~~~~il~~~~~~~~~~~~N 372 (374)
..+..+++...+++.........+++++.++..+.=........+.+.+.+.|+.++|
T Consensus 319 ~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~ 376 (455)
T COG0534 319 AARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQ 376 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777888888888777777778888999987766111111346777888888777654
No 17
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.05 E-value=9e-07 Score=88.46 Aligned_cols=324 Identities=11% Similarity=-0.011 Sum_probs=191.2
Q ss_pred chhhhhHHHHHHHHHHHHhHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHH--hHHHHHHHHhcccccCCCccchh
Q 017298 9 STSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFL--SREGFRRACMRADIKCDGASREE 86 (374)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~r~i~fi~~~ilaRlL~P~~fGlvai~l~~~~~~~~~l--s~~g~~~alir~~~~~~~~~~~~ 86 (374)
-++..|=+.=.+++++.+.+.+++-+.++.|+.++++..-+++...+......+. -..|. .+++.+....++ .+
T Consensus 8 ~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~~~~~~~~~~g~-~~lvsq~~Ga~~---~~ 83 (441)
T PRK10367 8 DKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFMLLLFLRMST-TGLTAQAFGAKN---PQ 83 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCCC---HH
Confidence 3445555566788899999999999999999878776665666433322111111 11221 233433222211 11
Q ss_pred hHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcccCCcch-----hHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhh
Q 017298 87 NAAKLLKV-AWLTLPLGIFITIGACFFVLWWQGLSYSNPY-----AQAIFINGFACVLELLAEPLYILSQNLLLLRLRLV 160 (374)
Q Consensus 87 ~~~~~~~~-~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~l~~~i~~l~~p~~~~~~r~l~f~~~~~ 160 (374)
+..+.... .++++..++.+++....+........-.++. ...+.+++++.+...+.......++-..+-|.-.+
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 33333322 3444444444433322221111111122332 24567777787877777777677777778888888
Q ss_pred hhhhHHHHhHHHHhhhhhccc-Ccchh-HHHHHHHHHHHHHHHHHHHHHHhhhcccccCcccccccCCcccccHHHHHHH
Q 017298 161 VETVATFSRCFTMCILIVKQY-EMEKG-IVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMC 238 (374)
Q Consensus 161 ~~~~~~~~~~~~~i~l~~~~~-~~~~v-~a~~~~qi~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~f~ 238 (374)
+...+.+++.+....++.... |..|. ++.+++|.+..+... ++.++. ++.++.+..+.++.. ....|+.++.+
T Consensus 164 ~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~--~~~~~~--~~~~~~~~~~~~~~~-~~~~~~il~ig 238 (441)
T PRK10367 164 LLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGL--LMVRKV--LKLRGISLEMLKTAW-RGNFRRLLALN 238 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHH--HHHHHH--HhhccccHHHhhhhh-HHHHHHHHHhC
Confidence 888887777777666554221 22222 666666666543322 222111 110100000011100 01237889999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccCCccchHHHHHhhhhhhHHHHhhhhhhhhhHHHHHHHhcCCCchhhHHHHHHHHH
Q 017298 239 TLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAE 318 (374)
Q Consensus 239 ~~l~~~si~~~~l~~~D~lvig~~~~~~~~G~Y~~a~~l~sl~~r~i~~pi~~~~~p~fs~~~~~~~~~~~~~~~~~~~~ 318 (374)
.|...+..........-..+++++ |.+.++-|+++.++.++.. .....+.++.-|.-++..-.+|. ++.++..+.
T Consensus 239 ~P~~~~~~~~~~~~~~~~~~~~~~-G~~alAa~~I~~~i~~~~~-~~~~gl~~a~~~lvg~~~Ga~~~---~~a~~~~~~ 313 (441)
T PRK10367 239 RDIMLRSLLLQLCFGAITVLGARL-GSDIIAVNAVLMTLLTFTA-YALDGFAYAVEAHSGQAYGARDG---SQLLDVWRA 313 (441)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHcCCCH---HHHHHHHHH
Confidence 999999988888877778888875 5678999999999988654 55557888888899998877655 455557777
Q ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHh
Q 017298 319 ALKLVLLIGLVFMAFGPSYSYSLVRLLY 346 (374)
Q Consensus 319 ~l~~~~~l~~~~~~~~~~~a~~lv~ll~ 346 (374)
.++.....+..........+++++.++-
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~i~~lFt 341 (441)
T PRK10367 314 ACRQSGIVALLFSLVYALAGEHIIALLT 341 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 8888877777666666667778888753
No 18
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.00 E-value=1.9e-06 Score=86.96 Aligned_cols=341 Identities=7% Similarity=-0.062 Sum_probs=191.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHhHHHHHH---HHhcccccCCCccchhhHHHHH
Q 017298 16 FKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRR---ACMRADIKCDGASREENAAKLL 92 (374)
Q Consensus 16 ~~~~~~~~~~~r~i~fi~~~ilaRlL~P~~fGlvai~l~~~~~~~~~ls~~g~~~---alir~~~~~~~~~~~~~~~~~~ 92 (374)
+.=.+++++.....+++.+.++.| +++++..-+++...+........ .|+.. +++.+.-..++ .++..+..
T Consensus 35 a~P~~~~~~~~~~~~~vd~~~vg~-lG~~alAA~~i~~~i~~~~~~~~--~gl~~g~~~lvsq~~Ga~~---~~~~~~~~ 108 (478)
T PRK10189 35 AVPIFIENLCVLLMGVLSTFLVSW-LGKEAMAGVGLADSFNMVIMAFF--AAIDLGTTVVVAFSLGKRD---RRRARAAA 108 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCC---HHHHHHHH
Confidence 334566777888888888888887 68888777777655532222111 22222 22222111111 11333433
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHhhcccC--Ccch-----hHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhhhhhh
Q 017298 93 KVA-WLTLPLGIFITIGACFFVLWWQGLSY--SNPY-----AQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETV 164 (374)
Q Consensus 93 ~~~-~~~i~~g~~~~~~~~~~~~~~~~~~~--~~~~-----~~~l~~~~l~~~i~~l~~p~~~~~~r~l~f~~~~~~~~~ 164 (374)
..+ ++++..++.++++...+......... .|+. ...+.+..+..+..++.......+|-..+-|.-..+...
T Consensus 109 ~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~i~~~ 188 (478)
T PRK10189 109 RQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPLLINGG 188 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhHHHHHH
Confidence 333 34444555554443333222222221 2432 244677777788887777766667766777777777777
Q ss_pred HHHHhHHHHhhhhhcc---cCcchh----HHHHHHHHHHHHHHHHHHHHHHhhhcccccCccccc-ccCCcccccHHHHH
Q 017298 165 ATFSRCFTMCILIVKQ---YEMEKG----IVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPF-RLGNMMSYDKQLAN 236 (374)
Q Consensus 165 ~~~~~~~~~i~l~~~~---~~~~~v----~a~~~~qi~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~l~~ 236 (374)
..+++......+++.. .+ +|+ ++.+++|.+..++. .++.+.+.++..+ .+ .++ ....+....|+.++
T Consensus 189 ~~~~ni~l~~~li~g~~~~~~-lGv~Gaa~At~is~~~~~~~~--~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~il~ 263 (478)
T PRK10189 189 MNILNIIISSILIYGLFSWQG-LGFVGAGLGLTISRYIGAVAI--IWVLMIGFNPALR-IS-LKSYFKPLNFAIIWEVMG 263 (478)
T ss_pred HHHHHHHHhHHHHhcCCCCCc-cchHHHHHHHHHHHHHHHHHH--HHHHHhccCccce-ee-eccccccCCHHHHHHHHH
Confidence 7777766666654422 12 333 55555555543332 1222111000000 00 000 00001123478999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhccCCccchHHHHHhhhhhhHHHHhhhhhhhhhHHHHHHHhcCCCchhhHHHHHHH
Q 017298 237 MCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSL 316 (374)
Q Consensus 237 f~~~l~~~si~~~~l~~~D~lvig~~~~~~~~G~Y~~a~~l~sl~~r~i~~pi~~~~~p~fs~~~~~~~~~~~~~~~~~~ 316 (374)
.+.|...+.+...+..-.-..+++++ |.+.++-|+++.++.++.. .....+.++.-+.-++..-.++. ++.++..
T Consensus 264 iG~P~~~~~~~~~~~~~~~~~~~~~~-G~~~~Aa~~I~~~i~~~~~-~~~~gi~~A~~~lvg~~~Ga~~~---~~a~~~~ 338 (478)
T PRK10189 264 IGIPASIESVLFNGGKLLTQMFVAGM-GTSVIAGNFIAFSIAALIN-LPGNALGSASTIITGTRLGKGQI---AQAERQL 338 (478)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCH---HHHHHHH
Confidence 99998877666655444444445543 5678899999999988644 45557888888888888766554 5555577
Q ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHhcCCcCCCchHHHHHHHHHHHHHhhcC
Q 017298 317 AEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMN 372 (374)
Q Consensus 317 ~~~l~~~~~l~~~~~~~~~~~a~~lv~ll~G~~w~~~~~~~il~~~~~~~~~~~~N 372 (374)
+..++....++..+..+....+++++.++-.|.=.-......+.+.+.+.|+.++|
T Consensus 339 ~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~ 394 (478)
T PRK10189 339 RHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAAS 394 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777666666666788888865432100011235778888888887765
No 19
>PRK01766 multidrug efflux protein; Reviewed
Probab=97.99 E-value=4.4e-05 Score=76.49 Aligned_cols=137 Identities=9% Similarity=0.004 Sum_probs=104.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchHHHHHhhhhhhHHHHhhhhhhhhhHHHHHHHhcCCCchhhH
Q 017298 231 DKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSK 310 (374)
Q Consensus 231 ~~~l~~f~~~l~~~si~~~~l~~~D~lvig~~~~~~~~G~Y~~a~~l~sl~~r~i~~pi~~~~~p~fs~~~~~~~~~~~~ 310 (374)
.|+.++++.|...+++..++.+..|..++|++ +.++++-++++.++.... ..+...+.....|..++...++|. +
T Consensus 11 ~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~-g~~~laa~~~~~~~~~~~-~~~~~g~~~a~~~~vs~~~g~~~~---~ 85 (456)
T PRK01766 11 ARQLLALALPILLAQVAQTAMGFVDTVMAGGV-SATDLAAVAIGTSIWLPV-ILFGHGLLLALTPIVAQLNGAGRR---E 85 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCh---H
Confidence 37899999999999999999999999999995 677888899998875533 355667888889999998876554 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhcCCcCCCchHHHHHHHHHHHHHhhcC
Q 017298 311 KIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMN 372 (374)
Q Consensus 311 ~~~~~~~~~l~~~~~l~~~~~~~~~~~a~~lv~ll~G~~w~~~~~~~il~~~~~~~~~~~~N 372 (374)
+.++.++..+.....+++++.+.....+++++.++..|+-........+.+++...|+.+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~ 147 (456)
T PRK01766 86 RIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLY 147 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55568888999998888888887778888888876544311111235677777766666554
No 20
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=97.92 E-value=6.2e-05 Score=72.07 Aligned_cols=128 Identities=18% Similarity=0.181 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhccCCccchHHHHHhhhhhhHHHHhhhhhhhhhHHHHHHHhcCCCchhhHHHHHHHHHH
Q 017298 240 LFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEA 319 (374)
Q Consensus 240 ~l~~~si~~~~l~~~D~lvig~~~~~~~~G~Y~~a~~l~sl~~r~i~~pi~~~~~p~fs~~~~~~~~~~~~~~~~~~~~~ 319 (374)
|.+.+++..++.+..|+++++++ +.++.|.|+.+.++.+ +.+.+...+.++..|..++...++|. ++.++..+..
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~a~~i~~-~~~~~~~~i~~~~~~~~s~~~g~~~~---~~~~~~~~~~ 75 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHL-GPVDLAAVSLGSSVFM-FLFSILMGLGTATTALVAQAVGAGNY---QRLGRQAQQS 75 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHhHHHHH-HHHHHHHHHHHhHHHHHHHHHCCCCh---HHHHHHHHHH
Confidence 46778899999999999999995 5788999999988866 45577889999999999998766544 4556678888
Q ss_pred HHHHHHHHHHHHHhcccchHHHHHHHhcCCcCCCchHHHHHHHHHHHHHhhcC
Q 017298 320 LKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMN 372 (374)
Q Consensus 320 l~~~~~l~~~~~~~~~~~a~~lv~ll~G~~w~~~~~~~il~~~~~~~~~~~~N 372 (374)
+.....+++++..+....++++..++..++=........+.+++...|+.+++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~ 128 (342)
T TIGR00797 76 LLLALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLN 128 (342)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88988888888888888899998765423211111235777777777766554
No 21
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=97.81 E-value=0.00018 Score=72.15 Aligned_cols=137 Identities=9% Similarity=-0.052 Sum_probs=104.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchHHHHHhhhhhhHHHHhhhhhhhhhHHHHHHHhcCCCchhhH
Q 017298 231 DKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSK 310 (374)
Q Consensus 231 ~~~l~~f~~~l~~~si~~~~l~~~D~lvig~~~~~~~~G~Y~~a~~l~sl~~r~i~~pi~~~~~p~fs~~~~~~~~~~~~ 310 (374)
.|+.++.+.|...++++..+.+-.|.+++|++.|.++++.|++++++-++.. .+..-+....-+..++...++|+ +
T Consensus 11 ~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~~-~~~~~~~~g~~~lvsq~~Ga~~~---~ 86 (453)
T PRK09575 11 YRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGIIL-GIGLMVGMGTGSLLSIKRGEGDL---E 86 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHH-HHHHHHhccHHHHHHHHhcCCCH---H
Confidence 4899999999999999999999999999999988889999999998866544 33445555666788888766554 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhcCCcCCCchHHHHHHHHHHHHHhhc
Q 017298 311 KIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAM 371 (374)
Q Consensus 311 ~~~~~~~~~l~~~~~l~~~~~~~~~~~a~~lv~ll~G~~w~~~~~~~il~~~~~~~~~~~~ 371 (374)
+.++..++.+.....+++++.......+++++.++.++.=......+++++++...|+..+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l 147 (453)
T PRK09575 87 KAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLG 147 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 5566888899999989988888888899999987643321111123577777776666543
No 22
>PRK10189 MATE family multidrug exporter; Provisional
Probab=97.69 E-value=0.00019 Score=72.51 Aligned_cols=135 Identities=14% Similarity=0.208 Sum_probs=103.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchHHHHHhhhhhhHHHHhhhhhhhhhHHHHHHHhcCCCchhh
Q 017298 230 YDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKS 309 (374)
Q Consensus 230 ~~~~l~~f~~~l~~~si~~~~l~~~D~lvig~~~~~~~~G~Y~~a~~l~sl~~r~i~~pi~~~~~p~fs~~~~~~~~~~~ 309 (374)
..|+.++++.|...++++..+.+=.|..++|+ .+.++++-++++.++.++.. .+..-+....-+.-++..-.+|.
T Consensus 27 ~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~-lG~~alAA~~i~~~i~~~~~-~~~~gl~~g~~~lvsq~~Ga~~~--- 101 (478)
T PRK10189 27 FWREITPLAVPIFIENLCVLLMGVLSTFLVSW-LGKEAMAGVGLADSFNMVIM-AFFAAIDLGTTVVVAFSLGKRDR--- 101 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCH---
Confidence 35899999999999999999999999999998 57789999999999976543 45556777788888888766554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhcCCcCCCc----hHHHHHHHHHHHHHhhc
Q 017298 310 KKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGE----ASTALRYYCLYVVVLAM 371 (374)
Q Consensus 310 ~~~~~~~~~~l~~~~~l~~~~~~~~~~~a~~lv~ll~G~~w~~~~----~~~il~~~~~~~~~~~~ 371 (374)
++.++..+..+.+...+++++..+....+++++.++.|.. |.+ ...++.+.+...|+.++
T Consensus 102 ~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~--~~~v~~~a~~Yl~i~~~~~~~~~~ 165 (478)
T PRK10189 102 RRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDA--TPEVKALALTYLELTVWSYPAAAI 165 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCC--ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555677878888888888877777778889988775211 221 23577777776666654
No 23
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=97.52 E-value=0.00092 Score=66.86 Aligned_cols=136 Identities=18% Similarity=0.154 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchHHHHHhhhhhhHHHHhhhhhhhhhHHHHHHHhcCCCchhhHH
Q 017298 232 KQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKK 311 (374)
Q Consensus 232 ~~l~~f~~~l~~~si~~~~l~~~D~lvig~~~~~~~~G~Y~~a~~l~sl~~r~i~~pi~~~~~p~fs~~~~~~~~~~~~~ 311 (374)
|++++++.|...++++..+.+=.|.+++|++.+.++++-++++.++-+... .+..-+....-+.-++..-++|. ++
T Consensus 9 k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~~-~~~~~~~~g~~~lvsq~~Ga~~~---~~ 84 (441)
T PRK10367 9 KALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLF-MLLLFLRMSTTGLTAQAFGAKNP---QA 84 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCH---HH
Confidence 889999999999999999999999999999878888999999988876554 44445667777888888766554 55
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhcCCcCCCchHHHHHHHHHHHHHhhc
Q 017298 312 IGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAM 371 (374)
Q Consensus 312 ~~~~~~~~l~~~~~l~~~~~~~~~~~a~~lv~ll~G~~w~~~~~~~il~~~~~~~~~~~~ 371 (374)
.++..++.+.....+++++..++....++++.++..+.=......+++.+++...|+..+
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~ 144 (441)
T PRK10367 85 LARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLA 144 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566888888888888888887777777787775543321111123678877777666554
No 24
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=97.49 E-value=0.0001 Score=62.56 Aligned_cols=127 Identities=17% Similarity=0.198 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhccCCccchHHHHHhhhhhhHHHHhhhhhhhhhHHHHHHHhcCCCchhhHHHHHHHHHH
Q 017298 240 LFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEA 319 (374)
Q Consensus 240 ~l~~~si~~~~l~~~D~lvig~~~~~~~~G~Y~~a~~l~sl~~r~i~~pi~~~~~p~fs~~~~~~~~~~~~~~~~~~~~~ 319 (374)
|...+.++..+....|..+++++ |.++++.|+++.++.+... .+...+.+..-+..++...++|.++.++ .++..
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~-g~~~~a~~~i~~~~~~~~~-~~~~g~~~a~~~~~s~~~G~~~~~~~~~---~~~~~ 75 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRL-GPEALAAYGIASSIFSILF-MLIFGLATALQILISQNIGAGDYKRAKK---VVRQG 75 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCC-TTCCCCHCCHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCSSSTTTCCC---HHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHh-hhcccccccccceeeccccccccccccc---ccccc
Confidence 56788899999999999999999 9999999999999998655 5777899999999999887766655444 78888
Q ss_pred HHHHHHHHHHHHHhcccchHHHHHHHhcCCcCCCchHHHHHHHHHHHHHhhc
Q 017298 320 LKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAM 371 (374)
Q Consensus 320 l~~~~~l~~~~~~~~~~~a~~lv~ll~G~~w~~~~~~~il~~~~~~~~~~~~ 371 (374)
+.+...+++++..+....++++..++..++=.-......+.+.+...|+.++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (162)
T PF01554_consen 76 LLLSLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFAL 127 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHH
T ss_pred cccchhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHH
Confidence 8999888888888877777777776544431111123455555655555443
No 25
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=97.33 E-value=0.0018 Score=65.21 Aligned_cols=128 Identities=16% Similarity=0.110 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhccCCccchHHHHHhhhhhhHHHHhhhhhhhhhHHHHHHHhcCCCchhhHHHHHHH
Q 017298 237 MCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSL 316 (374)
Q Consensus 237 f~~~l~~~si~~~~l~~~D~lvig~~~~~~~~G~Y~~a~~l~sl~~r~i~~pi~~~~~p~fs~~~~~~~~~~~~~~~~~~ 316 (374)
=..|.+..+++..+.+=.|+.++++..++++.|.|+.+..+-+....+...-+....-+..++...++|+ ++.++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~---~~~~~~~ 80 (488)
T TIGR02900 4 GTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDR---KNIKKIL 80 (488)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccch---hhHHHHH
Confidence 3578899999999999999999999999999999999999877666555456777777777776544443 4455577
Q ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHhcCCcCCCchHHHHHHHHHHHHHhhc
Q 017298 317 AEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAM 371 (374)
Q Consensus 317 ~~~l~~~~~l~~~~~~~~~~~a~~lv~ll~G~~w~~~~~~~il~~~~~~~~~~~~ 371 (374)
+........+++++.......++.+...++++. . ....+++++...|+.++
T Consensus 81 ~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~---~-~~~~l~~~~~~~~~~~~ 131 (488)
T TIGR02900 81 KVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDE---R-SLYSLLVICPAMPFIAL 131 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCh---h-HHHHHHHHHHHHHHHHH
Confidence 777777767776666555556666665554432 1 11356666666665544
No 26
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=97.32 E-value=0.0022 Score=64.41 Aligned_cols=137 Identities=20% Similarity=0.190 Sum_probs=108.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchHHHHHhhhhhhHHHHhhhhhhhhhHHHHHHHhcCCCchhh
Q 017298 230 YDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKS 309 (374)
Q Consensus 230 ~~~~l~~f~~~l~~~si~~~~l~~~D~lvig~~~~~~~~G~Y~~a~~l~sl~~r~i~~pi~~~~~p~fs~~~~~~~~~~~ 309 (374)
..|++++++.|+..++++..+.+-.|.+++|++. .++++-=++++.+-.++. .+..-+.-..-+..+|..-.||+
T Consensus 15 ~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~-~~alaav~la~~i~~~~~-~~~~gl~~g~~~liaq~~Ga~~~--- 89 (455)
T COG0534 15 ILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLG-AEALAAVGLANPIFFLII-AIFIGLGTGTTVLVAQAIGAGDR--- 89 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHcCCch---
Confidence 3489999999999999999999999999999998 778888888887777655 55557888888999998776555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhcCCcCCCchHHHHHHHHHHHHHhhc
Q 017298 310 KKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAM 371 (374)
Q Consensus 310 ~~~~~~~~~~l~~~~~l~~~~~~~~~~~a~~lv~ll~G~~w~~~~~~~il~~~~~~~~~~~~ 371 (374)
++.++..++.+-...+++++........+++++.++.+++=....+..++++.+.-.|++.+
T Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~ 151 (455)
T COG0534 90 KKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALL 151 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 55666888899989899988888888899999999887431222234677777776666554
No 27
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=97.20 E-value=0.0029 Score=63.68 Aligned_cols=132 Identities=16% Similarity=0.043 Sum_probs=100.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchHHHHHhhhhhhHHHHhhhhhhhhhHHHHHHHhcCCCchhhH
Q 017298 231 DKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSK 310 (374)
Q Consensus 231 ~~~l~~f~~~l~~~si~~~~l~~~D~lvig~~~~~~~~G~Y~~a~~l~sl~~r~i~~pi~~~~~p~fs~~~~~~~~~~~~ 310 (374)
.|++++.+.|...+++..++.+-.|.+++|++ +.++++-++++.++-+... .+..-+....-+..++..-++|. +
T Consensus 9 ~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~l-g~~alAa~~i~~~i~~~~~-~~~~gl~~~~~~i~aq~~Ga~~~---~ 83 (464)
T PRK00187 9 LKAILRLAGPLIASQLAHMLMVFTDTLMMGRL-GPEALAGGGLGAASYSFVS-IFCVGVIAAVGTLVAIRHGAGDI---E 83 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCh---h
Confidence 38899999999999999999999999999995 7788999999999977654 44566777888889998876655 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhcCCcCCCc---hHHHHHHHHHHHHHhhc
Q 017298 311 KIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGE---ASTALRYYCLYVVVLAM 371 (374)
Q Consensus 311 ~~~~~~~~~l~~~~~l~~~~~~~~~~~a~~lv~ll~G~~w~~~~---~~~il~~~~~~~~~~~~ 371 (374)
+.++.++..+.....++++...... .+++++.++ |.+ +.. .-.++++++...|.+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~-~~~--~ev~~~~~~Yl~i~~~~~~~~~l 143 (464)
T PRK00187 84 GATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLF-GQA--PQNVDAAMQFLHLLPFALPGYLS 143 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHc-CCC--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666788788888777777666654 678887755 442 211 23677777776666554
No 28
>PRK15099 O-antigen translocase; Provisional
Probab=97.07 E-value=0.19 Score=49.68 Aligned_cols=188 Identities=13% Similarity=0.039 Sum_probs=95.9
Q ss_pred hhhhhHHHHHHHHHHHHhHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHhHHHHHHHHh----cccccCCCccch
Q 017298 10 TSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACM----RADIKCDGASRE 85 (374)
Q Consensus 10 ~~~~~~~~~~~~~~~~~r~i~fi~~~ilaRlL~P~~fGlvai~l~~~~~~~~~ls~~g~~~ali----r~~~~~~~~~~~ 85 (374)
+++.+=..+....+....+.+.+.+.++.+..++++-|.++...-+........ -.++.++.. +.++.+
T Consensus 215 k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~-~~~~~~a~~P~~s~~~~~~------ 287 (416)
T PRK15099 215 GQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFI-TASFSVYLLPTLSRLTEKR------ 287 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCChH------
Confidence 445566678889999999999999999999999999999988766533222222 244554443 221111
Q ss_pred hhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcccCCcchh---HHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhhh
Q 017298 86 ENAAKLLK-VAWLTLPLGIFITIGACFFVLWWQGLSYSNPYA---QAIFINGFACVLELLAEPLYILSQNLLLLRLRLVV 161 (374)
Q Consensus 86 ~~~~~~~~-~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~l~~~i~~l~~p~~~~~~r~l~f~~~~~~ 161 (374)
+..+.+. ......+.++..++++.++........+++++. +.+..++++.++.......-.....+.+.+.....
T Consensus 288 -~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~ 366 (416)
T PRK15099 288 -DITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNKFTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILA 366 (416)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112222 222333444444444444444443445666542 45566666766665533321112222233333333
Q ss_pred hhhHHHHhHHHHhhhhhcccCcchhHHHHHHHHHHHHHHHHHHH
Q 017298 162 ETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYW 205 (374)
Q Consensus 162 ~~~~~~~~~~~~i~l~~~~~~~~~v~a~~~~qi~~~~~~~~~~~ 205 (374)
+....++.......++-.+.-....|+.++++.+......+.++
T Consensus 367 ~~~~~~l~i~l~~~li~~~G~~G~a~a~~is~~~~~~~~~~~~~ 410 (416)
T PRK15099 367 EVSQFTLLTGFAHWLIPLHGALGAAQAYMATYIVYFSLCCGVFL 410 (416)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333322221112336777777776655444433
No 29
>PRK10459 colanic acid exporter; Provisional
Probab=96.81 E-value=0.22 Score=50.25 Aligned_cols=177 Identities=14% Similarity=0.044 Sum_probs=90.3
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHhHHHHHH----HHhcccccCCCccchhhHH
Q 017298 14 RTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRR----ACMRADIKCDGASREENAA 89 (374)
Q Consensus 14 ~~~~~~~~~~~~~r~i~fi~~~ilaRlL~P~~fGlvai~l~~~~~~~~~ls~~g~~~----alir~~~~~~~~~~~~~~~ 89 (374)
+=..|.+..++.....+-+-+.++.+.++|++.|.++.+..+.......++ ..+.+ ..-+.++++ + +-++.+.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~-~~i~~v~~P~~s~~~~~~-~-~~~~~~~ 287 (492)
T PRK10459 211 SFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKIN-PIITRVAFPVFAKIQDDT-E-KLRVGFL 287 (492)
T ss_pred hhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHhcCCH-H-HHHHHHH
Confidence 334577777777777777778899999999999999987665433222222 11111 111221111 1 0111223
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHhhcccCCcch---hHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhhhhhhH
Q 017298 90 KLLKVA-WLTLPLGIFITIGACFFVLWWQGLSYSNPY---AQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVA 165 (374)
Q Consensus 90 ~~~~~~-~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~l~~~i~~l~~p~~~~~~r~l~f~~~~~~~~~~ 165 (374)
+..... +..+|.. +.+..+++......+++.+ .+.+.++++..++..+..+....++-..+-|...+.+...
T Consensus 288 ~~~~~~~~~~~p~~----~~l~~~a~~ii~ll~g~~~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~ 363 (492)
T PRK10459 288 KLLSVLGIINFPLL----LGLMVVSNNFVPLVFGEKWNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFK 363 (492)
T ss_pred HHHHHHHHHHHHHH----HHHHHHhHHHHHHhcChhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHH
Confidence 332222 2333332 2222232222222345544 3667888888888888877665555555555555555444
Q ss_pred HHHhHHHHhhhhhcccCcchhHHHHHHHHHHHHHHH
Q 017298 166 TFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLF 201 (374)
Q Consensus 166 ~~~~~~~~i~l~~~~~~~~~v~a~~~~qi~~~~~~~ 201 (374)
.++........ . ..+++.+.+++..+...+.+
T Consensus 364 ~~~~i~~~~~~--~--~~~G~~g~a~a~~i~~~~~~ 395 (492)
T PRK10459 364 TFLFIPAIVIG--G--QLAGLIGVALGFLLVQIINT 395 (492)
T ss_pred HHHHHHHHHHH--H--hhccHHHHHHHHHHHHHHHH
Confidence 33333221111 1 11456666666655554433
No 30
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=96.60 E-value=0.93 Score=45.71 Aligned_cols=159 Identities=11% Similarity=0.063 Sum_probs=84.4
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHhHHHHHHHHh----cccccCCCccchhh
Q 017298 12 LSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACM----RADIKCDGASREEN 87 (374)
Q Consensus 12 ~~~~~~~~~~~~~~~r~i~fi~~~ilaRlL~P~~fGlvai~l~~~~~~~~~ls~~g~~~ali----r~~~~~~~~~~~~~ 87 (374)
..+=..+....+......+.+-+. +.+.+++++.|.++.+..+.......+. .++..+.. |+..++| .++
T Consensus 225 ~l~~~~p~~~~~~~~~~~~~id~~-~~~~~~~~~v~~~~~a~~l~~~~~~~~~-~~i~~~~~P~~s~~~~~~~----~~~ 298 (502)
T TIGR01695 225 FLKLFLPTTLGSSASQITLLINTA-LASFLEIGSVSALYYANRIYQLPLGIFG-ISLSTVLLPKLSRHASEGN----WNE 298 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCcchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCC----HHH
Confidence 344445667777777777776665 4888999998888876544322211121 23333322 2221111 112
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcccCC----c-c-h---hHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhh
Q 017298 88 AAKLLKVA-WLTLPLGIFITIGACFFVLWWQGLSYS----N-P-Y---AQAIFINGFACVLELLAEPLYILSQNLLLLRL 157 (374)
Q Consensus 88 ~~~~~~~~-~~~i~~g~~~~~~~~~~~~~~~~~~~~----~-~-~---~~~l~~~~l~~~i~~l~~p~~~~~~r~l~f~~ 157 (374)
.++.+... ......++.+++.+..+........++ + + . .+.+.+++++.++.++..+....++-.-|-|.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~ 378 (502)
T TIGR01695 299 LRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRT 378 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCcc
Confidence 33333322 222333444444333333222222233 1 1 1 25577888888888887777666666667777
Q ss_pred hhhhhhhHHHHhHHHHhhh
Q 017298 158 RLVVETVATFSRCFTMCIL 176 (374)
Q Consensus 158 ~~~~~~~~~~~~~~~~i~l 176 (374)
..+.+....+++......+
T Consensus 379 ~~~~~~~~~~i~i~l~~~l 397 (502)
T TIGR01695 379 PFINSVISVVLNALLSLLL 397 (502)
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 7777777766665554444
No 31
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=96.32 E-value=0.41 Score=48.09 Aligned_cols=164 Identities=20% Similarity=0.175 Sum_probs=96.0
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCccchhhHHHH
Q 017298 12 LSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENAAKL 91 (374)
Q Consensus 12 ~~~~~~~~~~~~~~~r~i~fi~~~ilaRlL~P~~fGlvai~l~~~~~~~~~ls~~g~~~alir~~~~~~~~~~~~~~~~~ 91 (374)
..+-............+.+-+=+.++.+.++|++.|+++.+..+. .....+. ..+..++.-.-.+..++.|.+..++.
T Consensus 215 ~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~-~~~~~~~-~~l~~~l~P~~s~~~~~~~~~~~~~~ 292 (480)
T COG2244 215 LLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLV-SLLLIVA-SALNRVLFPALSRAYAEGDRKALKKL 292 (480)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHH-HHHHHHH-HHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 344455667788888888889999999999999999999544433 3333333 34444444221110000111121122
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHhhcccCCcch---hHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhhhhhhHHH
Q 017298 92 LKVAW-LTLPLGIFITIGACFFVLWWQGLSYSNPY---AQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATF 167 (374)
Q Consensus 92 ~~~~~-~~i~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~l~~~i~~l~~p~~~~~~r~l~f~~~~~~~~~~~~ 167 (374)
.+... .....++...+.+..+........+++++ .+.+.++++..++..+..+....++-..+.+...+....+.+
T Consensus 293 ~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i 372 (480)
T COG2244 293 LRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLISAL 372 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHH
Confidence 22111 11122222222222222222233456654 467888999999999999988888887888888888887777
Q ss_pred HhHHHHhhhh
Q 017298 168 SRCFTMCILI 177 (374)
Q Consensus 168 ~~~~~~i~l~ 177 (374)
.+.+....++
T Consensus 373 ~~~~l~~~li 382 (480)
T COG2244 373 LNLILNLLLI 382 (480)
T ss_pred HHHHHHhHHH
Confidence 7777766553
No 32
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=95.08 E-value=0.054 Score=45.62 Aligned_cols=139 Identities=17% Similarity=0.166 Sum_probs=71.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHhHHHHHHHHh---cccccCCCccchhhHHHHHH-HH
Q 017298 20 LATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACM---RADIKCDGASREENAAKLLK-VA 95 (374)
Q Consensus 20 ~~~~~~~r~i~fi~~~ilaRlL~P~~fGlvai~l~~~~~~~~~ls~~g~~~ali---r~~~~~~~~~~~~~~~~~~~-~~ 95 (374)
.+.++.......+.+.++.|+ ++++.+.+++...+...... + -.|+..+.. .+.-.+++.+ +..+.+. ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~-g~~~~a~~~i~~~~~~~~~~-~-~~g~~~a~~~~~s~~~G~~~~~---~~~~~~~~~~ 76 (162)
T PF01554_consen 3 ALMQLLQVLGFIIDTIFVGRL-GPEALAAYGIASSIFSILFM-L-IFGLATALQILISQNIGAGDYK---RAKKVVRQGL 76 (162)
T ss_dssp HHHHHHHHHHHHHHHHCCHCC-TTCCCCHCCHHHHHHHHHHH-H-HHHHHHHHHHHHCCCCCSSSTT---TCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhh-h-cccccccccceeeccccccccc---cccccccccc
Confidence 456777778888888888888 99999999997766544432 2 255554443 2221111111 1112222 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCcch-----hHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhhhhhh
Q 017298 96 WLTLPLGIFITIGACFFVLWWQGLSYSNPY-----AQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETV 164 (374)
Q Consensus 96 ~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~l~~~i~~l~~p~~~~~~r~l~f~~~~~~~~~ 164 (374)
++++..++.+++....+...+...+.+++. ...++..++..++.++.+.....+|-..+.|.-...+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 150 (162)
T PF01554_consen 77 LLSLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISII 150 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHH
T ss_pred ccchhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHH
Confidence 455556666655544332222232233332 244566666666666555443334444444444444333
No 33
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=94.96 E-value=0.64 Score=47.23 Aligned_cols=137 Identities=14% Similarity=0.148 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCC-ccchHHHHHhhhhhhHHHHhhhhh-hhhhHHHHHHHhcCCCchhh
Q 017298 232 KQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTP-YNQAVYGLVDKLGSLVVRMVFLPF-EESSYATFARSASGQYPQKS 309 (374)
Q Consensus 232 ~~l~~f~~~l~~~si~~~~l~~~D~lvig~~~~~-~~~G~Y~~a~~l~sl~~r~i~~pi-~~~~~p~fs~~~~~~~~~~~ 309 (374)
+.+++=...+....++..++-=.-..+++..+|. ...--|++|+++.++.-|++.... +++.-|.|.|..+++++++.
T Consensus 7 ~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~~ 86 (518)
T COG0728 7 MSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEAA 86 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhHH
Confidence 4566666777777777777777777888888886 677789999999999888877665 78888999998766544344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhcCCcCCCc---hHHHHHHHHHHHHHhhc
Q 017298 310 KKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGE---ASTALRYYCLYVVVLAM 371 (374)
Q Consensus 310 ~~~~~~~~~~l~~~~~l~~~~~~~~~~~a~~lv~ll~G~~w~~~~---~~~il~~~~~~~~~~~~ 371 (374)
++.++... -....+.+.+...+...++.+++.++++.|.+.+ +....++...|++++.+
T Consensus 87 ~~f~~~v~---~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL 148 (518)
T COG0728 87 RFFSRLVT---GLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISL 148 (518)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 44333322 2333344444444555666888789999872222 22345666667666553
No 34
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=94.72 E-value=3.9 Score=38.71 Aligned_cols=163 Identities=10% Similarity=0.018 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhhhhhhHHHHhHHHHhhhhhc---ccCc---chhHHHHHHHHHHHHHH
Q 017298 127 QAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVK---QYEM---EKGIVFALSQVAYAASL 200 (374)
Q Consensus 127 ~~l~~~~l~~~i~~l~~p~~~~~~r~l~f~~~~~~~~~~~~~~~~~~i~l~~~---~~~~---~~v~a~~~~qi~~~~~~ 200 (374)
.+...+.+-.++.++...+..++.|+ |....+-.+.++.++.-++.+..... .... -++.++..++.+-.-+.
T Consensus 130 ~a~l~L~llPfl~alr~~~qGILik~-r~s~iV~~aSI~~v~~qvV~v~~ll~~~l~~~~pllipil~~y~g~~vr~t~v 208 (345)
T PF07260_consen 130 RAFLYLTLLPFLDALRWIHQGILIKH-RHSWIVGSASIADVIAQVVLVAILLSMHLEPQDPLLIPILALYAGIAVRFTIV 208 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhhhc-cceeEeehHHHHHHHHHHHHHHHHHccccCccccHHHHHHHHHHHHHHHHHHH
Confidence 56788889999999988876566554 55544444444433333332222221 1110 13466677776666555
Q ss_pred HHHHHHHHhhhcccccCcccccccCC---cccccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCC-----ccchHHH
Q 017298 201 FLGYWGYFLLFGAFKTSDLFPFRLGN---MMSYDKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTP-----YNQAVYG 272 (374)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~~~~~l~~f~~~l~~~si~~~~l~~~D~lvig~~~~~-----~~~G~Y~ 272 (374)
+++||.-. .+..|.+++. +...-+.+++|.+|+......+.+.+-.-++++.+-.+- +.+.+-.
T Consensus 209 ~LGy~~~i--------~~~~p~~~~~~~~~~~tl~~~l~F~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~ 280 (345)
T PF07260_consen 209 CLGYYQSI--------HDIIPQLSGLEKGDSATLQRMLKFWWPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLT 280 (345)
T ss_pred HHHHHHHH--------hhhccccCCcccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhc
Confidence 56666311 1123333221 112236799999999999999999999999999996543 4556666
Q ss_pred HHhhhhhhHHHHhhhhhhhhhHHHHHHH
Q 017298 273 LVDKLGSLVVRMVFLPFEESSYATFARS 300 (374)
Q Consensus 273 ~a~~l~sl~~r~i~~pi~~~~~p~fs~~ 300 (374)
..|..|-.+..-+.. -++.+|.|-|.
T Consensus 281 ~~ypvgh~~y~w~~~--~r~~~paf~~~ 306 (345)
T PF07260_consen 281 ATYPVGHMPYGWLTE--LRAVYPAFDKN 306 (345)
T ss_pred cccCCCcCcchhHHh--HHhhCchhhcc
Confidence 666666555433321 23445555444
No 35
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=94.18 E-value=6.9 Score=39.25 Aligned_cols=192 Identities=13% Similarity=0.043 Sum_probs=96.7
Q ss_pred cchhhhhHHHHHHHHHHHHhHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHhHHHHHHHH----hcccccCCCcc
Q 017298 8 HSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRAC----MRADIKCDGAS 83 (374)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~r~i~fi~~~ilaRlL~P~~fGlvai~l~~~~~~~~~ls~~g~~~al----ir~~~~~~~~~ 83 (374)
..++..|-....+++....++-. .+.-.++..++|..-...+-+..+.......+. .++..+. -|+..++|+++
T Consensus 196 ~~~~~~~~~~p~~l~~~~~qi~~-lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~-~~i~tv~~P~ls~~~~~~d~~~ 273 (451)
T PF03023_consen 196 NLKRFLKLAIPLLLSSSISQINI-LVDRALASFLGEGSVSALNYAQRLYQLPLGIFA-VSISTVVFPKLSRLAAEGDWEE 273 (451)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCHHH
Confidence 34567777788888888888544 445566666777543333333222221111111 2222222 12221111110
Q ss_pred chhhHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HhhcccCCcch----hHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhh
Q 017298 84 REENAAKLLKVAW-LTLPLGIFITIGACFFVL-WWQGLSYSNPY----AQAIFINGFACVLELLAEPLYILSQNLLLLRL 157 (374)
Q Consensus 84 ~~~~~~~~~~~~~-~~i~~g~~~~~~~~~~~~-~~~~~~~~~~~----~~~l~~~~l~~~i~~l~~p~~~~~~r~l~f~~ 157 (374)
-.+...+.+.... +.+|..+.+.+...-+.- .+..-.++... ..++..++++++..++.......+.-+.|-|.
T Consensus 274 ~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~ 353 (451)
T PF03023_consen 274 FRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKT 353 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHh
Confidence 0112222222221 223332222211111100 11111133322 35688999999999887777666666677788
Q ss_pred hhhhhhhHHHHhHHHHhhhhhcccCcchhHHHHHHHHHHHHHHHHHHH
Q 017298 158 RLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLFLGYW 205 (374)
Q Consensus 158 ~~~~~~~~~~~~~~~~i~l~~~~~~~~~v~a~~~~qi~~~~~~~~~~~ 205 (374)
-+.....+.+++.+..+.+... +++.+.+.+..+.+.+.++..+
T Consensus 354 ~~~~~~~~~~lni~l~~~l~~~----~g~~Glala~sl~~~i~~~~l~ 397 (451)
T PF03023_consen 354 PVRISVISVVLNIILSILLVPF----FGVAGLALATSLSAIISALLLY 397 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888877776554222 5677777777777766554433
No 36
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=88.57 E-value=2.6 Score=37.81 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=29.5
Q ss_pred hhhhhhccCCccchHHHHHhhhhhhHHHHhhhhhhhh
Q 017298 256 KLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEES 292 (374)
Q Consensus 256 ~lvig~~~~~~~~G~Y~~a~~l~sl~~r~i~~pi~~~ 292 (374)
.+++++..+++|.|.|+.+.++.++.........++.
T Consensus 8 ~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~ 44 (251)
T PF13440_consen 8 LILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQS 44 (251)
T ss_pred HHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999987775554445443
No 37
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=87.09 E-value=5.3 Score=36.01 Aligned_cols=64 Identities=14% Similarity=0.075 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhccCCccchHHHHHhhhhhhHHHHhhhhhhhhhHHHHHHHh
Q 017298 238 CTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSA 301 (374)
Q Consensus 238 ~~~l~~~si~~~~l~~~D~lvig~~~~~~~~G~Y~~a~~l~sl~~r~i~~pi~~~~~p~fs~~~ 301 (374)
..+.....++..+..=.-..++.+..|+++.|.|+.+.++.++..-+...-+++...-..++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~ 68 (273)
T PF01943_consen 5 SLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYK 68 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence 4456667777777777788999999999999999999999988776656667666655555543
No 38
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=82.93 E-value=24 Score=28.71 Aligned_cols=69 Identities=16% Similarity=0.131 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhhhhhhHHHHhHHHHhhhhhcccCcchhHHHHHHHHHHHHHHH
Q 017298 129 IFINGFACVLELLAEPLYILSQNLLLLRLRLVVETVATFSRCFTMCILIVKQYEMEKGIVFALSQVAYAASLF 201 (374)
Q Consensus 129 l~~~~l~~~i~~l~~p~~~~~~r~l~f~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~v~a~~~~qi~~~~~~~ 201 (374)
+++++++.++.++..+....++-..|.|...+.+..+.+++....+.++.. +|..+.+.+..+..++.+
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~~----~G~~Gaa~a~~i~~~~~~ 70 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIPR----FGIYGAAIATAISEIVSF 70 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHH
Confidence 456888888999888888888888888888888888888888887776322 345555555555544433
No 39
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=77.05 E-value=53 Score=32.77 Aligned_cols=60 Identities=23% Similarity=0.338 Sum_probs=43.6
Q ss_pred CCCccchhhhhHHHHHHHHHHHHhHHHHHHHHHHHH-hhCchhhhHHHHHHHHHHHHHHHHh
Q 017298 4 APVDHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVR-HLTEADYAIYAVQFHLFVTCVLFLS 64 (374)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~r~i~fi~~~ilaR-lL~P~~fGlvai~l~~~~~~~~~ls 64 (374)
.|++.=.+..|++.|.++ -+.--.+.|...=++.+ .+.|=+|+++|+++.+++...+-+|
T Consensus 286 ~Pvd~Y~~~~Ra~KYgiL-FI~LTF~~fflfE~~~~~~iHpiQY~LVGlAl~lFYlLLLSlS 346 (430)
T PF06123_consen 286 EPVDHYQKSERAVKYGIL-FIGLTFLAFFLFELLSKLRIHPIQYLLVGLALVLFYLLLLSLS 346 (430)
T ss_pred ccccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777788899998655 44444455555555555 6999999999999999887776565
No 40
>PRK11715 inner membrane protein; Provisional
Probab=67.89 E-value=1.1e+02 Score=30.73 Aligned_cols=59 Identities=22% Similarity=0.338 Sum_probs=43.7
Q ss_pred CCccchhhhhHHHHHHHHHHHHhHHHHHHHHHHHH-hhCchhhhHHHHHHHHHHHHHHHHh
Q 017298 5 PVDHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVR-HLTEADYAIYAVQFHLFVTCVLFLS 64 (374)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~r~i~fi~~~ilaR-lL~P~~fGlvai~l~~~~~~~~~ls 64 (374)
|++.=.+.-|+..|.++ -+.--.+.|...=++.+ -+.|=+|+++|+++.+++...+-+|
T Consensus 293 PVd~Y~~~~RA~KYgiL-FI~LTF~~fFlfE~~~~~~iHpiQYlLVGlAl~lFYLLLLSlS 352 (436)
T PRK11715 293 PVDQYQKTERAVKYAIL-FIALTFAAFFLFELLKKLRIHPVQYLLVGLALVLFYLLLLSLS 352 (436)
T ss_pred cccHHHHHHHHHhHHHH-HHHHHHHHHHHHHHhcCceecHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666777888888644 45555555666666666 5999999999999999987776665
No 41
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=62.33 E-value=47 Score=33.62 Aligned_cols=112 Identities=15% Similarity=0.100 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchHHHHHhhhhhhHHHHhhhhhhhhhHHHHHHHhcCCCchhhHH
Q 017298 232 KQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKK 311 (374)
Q Consensus 232 ~~l~~f~~~l~~~si~~~~l~~~D~lvig~~~~~~~~G~Y~~a~~l~sl~~r~i~~pi~~~~~p~fs~~~~~~~~~~~~~ 311 (374)
|++++++.|.....+.++...-.|...+|+..+. +++-.+++.+..+...+-+..-+....-+..++....++. ++
T Consensus 28 k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~l-eLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~---~~ 103 (473)
T KOG1347|consen 28 KELARLALPAILTFLAQPLLSLVSTAFAGHLGNL-ELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKF---TA 103 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhhccccch-HHHHHHHHHHhhcccchHHhhccchhhhcchHhhhccccc---ch
Confidence 7899999999999999999999999999999998 9999999988877655555555566666666666554433 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhcC
Q 017298 312 IGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGK 348 (374)
Q Consensus 312 ~~~~~~~~l~~~~~l~~~~~~~~~~~a~~lv~ll~G~ 348 (374)
+.....+..-.....++|.... ..++++++..+..+
T Consensus 104 lg~~lqrs~~~l~~~~~~~~~l-~~~~~~il~~lgq~ 139 (473)
T KOG1347|consen 104 LGVYLQRSGIVLLVQGLPISLL-ILNSEPILLLLGQD 139 (473)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH-HHccHHHHHHhCCC
Confidence 3333343444444455554433 33667777766554
No 42
>COG4452 CreD Inner membrane protein involved in colicin E2 resistance [Defense mechanisms]
Probab=51.49 E-value=1.7e+02 Score=28.57 Aligned_cols=54 Identities=19% Similarity=0.199 Sum_probs=37.5
Q ss_pred hhhhhHHHHHHHHHHHHhHHHHHHHHHHHH-hhCchhhhHHHHHHHHHHHHHHHHh
Q 017298 10 TSLSRTFKYLLATQFLSRGIPFVFNSWIVR-HLTEADYAIYAVQFHLFVTCVLFLS 64 (374)
Q Consensus 10 ~~~~~~~~~~~~~~~~~r~i~fi~~~ilaR-lL~P~~fGlvai~l~~~~~~~~~ls 64 (374)
..+-|+..|. +.-+....+.|.+.=.+++ .+.|-+|+++|+++.+++...+-++
T Consensus 292 q~~~RA~kYa-IlfI~Ltf~afFifE~lt~~~~Hp~QY~LVGlsLv~FYLLLLaLs 346 (443)
T COG4452 292 QLTDRATKYA-ILFIGLTFMAFFIFEVLTGQRLHPMQYLLVGLSLVMFYLLLLALS 346 (443)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666664 4445555556666666666 4999999999999999887766555
No 43
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=41.93 E-value=4.2e+02 Score=27.47 Aligned_cols=29 Identities=17% Similarity=-0.017 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHH--hhCchhhhHHHHHHHH
Q 017298 27 RGIPFVFNSWIVR--HLTEADYAIYAVQFHL 55 (374)
Q Consensus 27 r~i~fi~~~ilaR--lL~P~~fGlvai~l~~ 55 (374)
+++|=.=..+++. +.+++|=|++++.-.+
T Consensus 270 ~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~ 300 (549)
T PF04506_consen 270 HLLTEGDKLVLSFFNLLTFEDQGVYALVSNY 300 (549)
T ss_pred HHHhhCCeEEEEeeccCCHHHhhHHHHHhhH
Confidence 3334444456677 8999999999996555
No 44
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=22.03 E-value=7.2e+02 Score=23.94 Aligned_cols=132 Identities=15% Similarity=0.062 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhc-c-CCccchHHHHHhhhhhhHHHHhhhhhhhhhHHHHHHHhcCCCchhh
Q 017298 232 KQLANMCTLFTFQSFRKLLLQEGEKLVLVWL-D-TPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKS 309 (374)
Q Consensus 232 ~~l~~f~~~l~~~si~~~~l~~~D~lvig~~-~-~~~~~G~Y~~a~~l~sl~~r~i~~pi~~~~~p~fs~~~~~~~~~~~ 309 (374)
+++.+|..|+..+++.--+-.|.-+--+.+- - ..+.+.-|.+|+.+.- ++..|+.+.-.....=..+++ ++
T Consensus 11 ~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~l----f~~sp~~~~~~igl~~V~s~r--sr- 83 (345)
T PF07260_consen 11 WPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLML----FFASPLSMFHHIGLVFVNSKR--SR- 83 (345)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHH----HHhChhhhhHHHHHHHhcchh--hh-
Confidence 5788999998888877766666555556542 2 3467899999998854 566666554443433332221 11
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhcccchHHHHHHHhcCCcCCCc-hHHHHHHHHHHHHHhhcCC
Q 017298 310 KKIGNSLAEALKLVLLIGLV-FMAFGPSYSYSLVRLLYGKKWSDGE-ASTALRYYCLYVVVLAMNE 373 (374)
Q Consensus 310 ~~~~~~~~~~l~~~~~l~~~-~~~~~~~~a~~lv~ll~G~~w~~~~-~~~il~~~~~~~~~~~~Ng 373 (374)
++ ....+.....++... ....--+...-+++-+.|-.+.=++ .-..++++..+=.+.++++
T Consensus 84 r~---~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~ 146 (345)
T PF07260_consen 84 RK---AVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRW 146 (345)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 222122222222111 1122226777888888888765543 2356666666555555443
Done!