Query 017298
Match_columns 374
No_of_seqs 126 out of 468
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 12:10:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017298.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017298hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 99.9 9.3E-20 3.2E-24 179.9 30.2 354 9-372 11-373 (460)
2 3mkt_A Multi antimicrobial ext 98.1 2.2E-06 7.6E-11 83.7 4.9 135 231-371 11-145 (460)
3 1j2j_B ADP-ribosylation factor 6.5 5.3E+02 0.018 16.0 3.3 22 296-317 12-33 (45)
4 1ug2_A 2610100B20RIK gene prod 4.4 1.1E+03 0.037 17.1 4.3 28 293-323 57-84 (95)
5 2ls3_A High affinity copper up 4.4 2.7E+02 0.0092 15.6 0.0 9 365-373 20-28 (29)
6 3u3c_B Paxillin LD2 peptide; 4 2.9 4.1E+02 0.014 13.9 0.6 8 252-259 5-12 (26)
7 2lma_A THP5 peptide; CD4+, imm 2.8 3.8E+02 0.013 14.0 0.4 8 41-48 16-23 (26)
8 2zjs_Y Preprotein translocase 2.7 1.8E+03 0.06 20.7 5.3 13 291-303 91-103 (434)
9 1wrg_A LH-1, light-harvesting 2.4 1.4E+03 0.048 14.7 3.2 6 218-223 46-51 (55)
10 2dw3_A Intrinsic membrane prot 2.4 1.6E+03 0.055 15.5 3.3 39 6-45 20-58 (77)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.87 E-value=9.3e-20 Score=179.94 Aligned_cols=354 Identities=13% Similarity=0.064 Sum_probs=241.2
Q ss_pred chhhhhHHHHHHHHHHHHhHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCccchhhH
Q 017298 9 STSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEADYAIYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASREENA 88 (374)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~r~i~fi~~~ilaRlL~P~~fGlvai~l~~~~~~~~~ls~~g~~~alir~~~~~~~~~~~~~~ 88 (374)
-++..|.+.+.+++++.+++.+++.+.++.| ++||++|.+++...+.. ....+. .|+..+....-.+...++|.++.
T Consensus 11 ~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~-lg~~~~~~~~~~~~i~~-~~~~~~-~g~~~~~~~~is~~~g~~~~~~~ 87 (460)
T 3mkt_A 11 ASNLIKLATPVLIASVAQTGMGFVDTIMAGG-VSAIDMAAVSIAASIWL-PSILFG-VGLLMALVPVVAQLNGAGRQHKI 87 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH-HTTTTSSHHHHHHHHHH-HHHHHH-HHHHHHHGGGCTTTTSSSSTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHcCCChhHH
Confidence 4566788899999999999999999999999 89999999999877643 323333 67777766432221111122233
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcccCCcch-----hHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhhhh
Q 017298 89 AKLLKVA-WLTLPLGIFITIGACFFVLWWQGLSYSNPY-----AQAIFINGFACVLELLAEPLYILSQNLLLLRLRLVVE 162 (374)
Q Consensus 89 ~~~~~~~-~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~l~~~i~~l~~p~~~~~~r~l~f~~~~~~~ 162 (374)
.+..+.. +.....++.++++ ..+..........++. ...+.+++++.++..+.......+|.+.+.|......
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 166 (460)
T 3mkt_A 88 PFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIG 166 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 4444444 3444445554433 2222222222222332 1345667777777777766666677778888888888
Q ss_pred hhHHHHhHHHHhhhhhc-c--cCcchhHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcccccccCCcccccHHHHHHHH
Q 017298 163 TVATFSRCFTMCILIVK-Q--YEMEKGIVFALSQVAYAASLFLGYWGYFLLFGAFKTSDLFPFRLGNMMSYDKQLANMCT 239 (374)
Q Consensus 163 ~~~~~~~~~~~i~l~~~-~--~~~~~v~a~~~~qi~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~f~~ 239 (374)
..+.+++.+....++.. . ++ +++.+.+++..+..++..+..+.+.++++..+..+..+.....+....|++++++.
T Consensus 167 ~~~~~~~i~l~~~li~~~~~~p~-~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (460)
T 3mkt_A 167 FIGLLLNIPLNWIFVYGKFGAPE-LGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGF 245 (460)
T ss_dssp HHHHHHHHHHHHHHHSCCTTCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCcc-cchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHhh
Confidence 88888888887776543 1 12 56666666666665554443332222221111101111111112234488999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhccCCccchHHHHHhhhhhhHHHHhhhhhhhhhHHHHHHHhcCCCchhhHHHHHHHHHH
Q 017298 240 LFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSKKIGNSLAEA 319 (374)
Q Consensus 240 ~l~~~si~~~~l~~~D~lvig~~~~~~~~G~Y~~a~~l~sl~~r~i~~pi~~~~~p~fs~~~~~~~~~~~~~~~~~~~~~ 319 (374)
|...+++...+.++.|+.+++++ |.++.|.|++++++.+++. .+...+.++..|..++...++|.++.++ .+++.
T Consensus 246 p~~~~~~~~~~~~~~~~~~~~~~-g~~~va~~~i~~~i~~~~~-~~~~~~~~a~~p~i~~~~g~~~~~~~~~---~~~~~ 320 (460)
T 3mkt_A 246 PVAAALFFEVTLFAVVALLVAPL-GSTVVAAHQVALNFSSLVF-MFPMSIGAAVSIRVGHKLGEQDTKGAAI---AANVG 320 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTT-SSHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHSSCCCTTTT---HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc-ChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCHHHHHH---HHHHH
Confidence 99999999999999999999999 9999999999999999877 7777999999999999987766655544 78889
Q ss_pred HHHHHHHHHHHHHhcccchHHHHHHHhcCCcCCCchHHHHHHHHHHHHHhhcC
Q 017298 320 LKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAMN 372 (374)
Q Consensus 320 l~~~~~l~~~~~~~~~~~a~~lv~ll~G~~w~~~~~~~il~~~~~~~~~~~~N 372 (374)
++....+++|+.......+++++.++.+|+..-....+++.+++...++.+++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 373 (460)
T 3mkt_A 321 LMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQ 373 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888999999998877643222346888888888777664
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=98.08 E-value=2.2e-06 Score=83.75 Aligned_cols=135 Identities=10% Similarity=0.032 Sum_probs=96.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCccchHHHHHhhhhhhHHHHhhhhhhhhhHHHHHHHhcCCCchhhH
Q 017298 231 DKQLANMCTLFTFQSFRKLLLQEGEKLVLVWLDTPYNQAVYGLVDKLGSLVVRMVFLPFEESSYATFARSASGQYPQKSK 310 (374)
Q Consensus 231 ~~~l~~f~~~l~~~si~~~~l~~~D~lvig~~~~~~~~G~Y~~a~~l~sl~~r~i~~pi~~~~~p~fs~~~~~~~~~~~~ 310 (374)
.|++++++.|++.++++..+.+..|++++|+ .|+++.|.|+++.++... ...+...+.....|..++...++|++
T Consensus 11 ~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~-lg~~~~~~~~~~~~i~~~-~~~~~~g~~~~~~~~is~~~g~~~~~--- 85 (460)
T 3mkt_A 11 ASNLIKLATPVLIASVAQTGMGFVDTIMAGG-VSAIDMAAVSIAASIWLP-SILFGVGLLMALVPVVAQLNGAGRQH--- 85 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH-HTTTTSSHHHHHHHHHHH-HHHHHHHHHHHHGGGCTTTTSSSSTT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCChh---
Confidence 3789999999999999999999999999999 899999999999999664 44566778888888888876655543
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhcCCcCCCchHHHHHHHHHHHHHhhc
Q 017298 311 KIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGKKWSDGEASTALRYYCLYVVVLAM 371 (374)
Q Consensus 311 ~~~~~~~~~l~~~~~l~~~~~~~~~~~a~~lv~ll~G~~w~~~~~~~il~~~~~~~~~~~~ 371 (374)
+.++.++..+.....+++++... ...+++++..+.+++-........+++++...|+.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~ 145 (460)
T 3mkt_A 86 KIPFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLL 145 (460)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44457777888887777776554 5566777765433321101112345555555554443
No 3
>1j2j_B ADP-ribosylation factor binding protein GGA1, ADP-ribosylation factor 1; protein transport; HET: GTP; 1.60A {Homo sapiens} SCOP: a.7.8.1
Probab=6.47 E-value=5.3e+02 Score=16.03 Aligned_cols=22 Identities=14% Similarity=0.220 Sum_probs=15.4
Q ss_pred HHHHHhcCCCchhhHHHHHHHH
Q 017298 296 TFARSASGQYPQKSKKIGNSLA 317 (374)
Q Consensus 296 ~fs~~~~~~~~~~~~~~~~~~~ 317 (374)
.+.+++.++++++++...+...
T Consensus 12 ~L~~Ll~s~~P~Dlq~AN~LiK 33 (45)
T 1j2j_B 12 MLARLLKSSHPEDLRAANKLIK 33 (45)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHcCChhhHHHHHHHHH
Confidence 6678888888877777555444
No 4
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=4.38 E-value=1.1e+03 Score=17.10 Aligned_cols=28 Identities=11% Similarity=0.366 Sum_probs=15.4
Q ss_pred hHHHHHHHhcCCCchhhHHHHHHHHHHHHHH
Q 017298 293 SYATFARSASGQYPQKSKKIGNSLAEALKLV 323 (374)
Q Consensus 293 ~~p~fs~~~~~~~~~~~~~~~~~~~~~l~~~ 323 (374)
.|...++.+.++.+++. ++.|..++++.
T Consensus 57 tFa~iA~~L~Nks~nqV---~~RFq~Lm~Lf 84 (95)
T 1ug2_A 57 TFSVISQQLGNKTPVEV---SHRFRELMQLF 84 (95)
T ss_dssp THHHHHHHHSSCCHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHccCCHHHH---HHHHHHHHHHH
Confidence 45556666655554433 33666666654
No 5
>2ls3_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=4.44 E-value=2.7e+02 Score=15.56 Aligned_cols=9 Identities=11% Similarity=0.482 Sum_probs=4.5
Q ss_pred HHHHhhcCC
Q 017298 365 YVVVLAMNE 373 (374)
Q Consensus 365 ~~~~~~~Ng 373 (374)
...+|..||
T Consensus 20 ML~~MtyN~ 28 (29)
T 2ls3_A 20 MLIFMTYNK 28 (29)
Confidence 345555554
No 6
>3u3c_B Paxillin LD2 peptide; 4-helix bundle, focal adhesion, tyrosine kinase, transferase-signaling protein complex; 3.70A {Homo sapiens}
Probab=2.92 E-value=4.1e+02 Score=13.91 Aligned_cols=8 Identities=38% Similarity=0.609 Sum_probs=4.1
Q ss_pred hhhhhhhh
Q 017298 252 QEGEKLVL 259 (374)
Q Consensus 252 ~~~D~lvi 259 (374)
+|.||+++
T Consensus 5 seldrlll 12 (26)
T 3u3c_B 5 SELDRLLL 12 (26)
T ss_pred HHHHHHHH
Confidence 45555554
No 7
>2lma_A THP5 peptide; CD4+, immune system; NMR {Synthetic}
Probab=2.84 E-value=3.8e+02 Score=14.03 Aligned_cols=8 Identities=0% Similarity=0.468 Sum_probs=5.3
Q ss_pred hCchhhhH
Q 017298 41 LTEADYAI 48 (374)
Q Consensus 41 L~P~~fGl 48 (374)
++|-+||.
T Consensus 16 isppefg~ 23 (26)
T 2lma_A 16 ISPPEFGX 23 (26)
T ss_dssp SSGGGGC-
T ss_pred eCCccccc
Confidence 57888884
No 8
>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_Y
Probab=2.69 E-value=1.8e+03 Score=20.70 Aligned_cols=13 Identities=0% Similarity=0.038 Sum_probs=9.3
Q ss_pred hhhHHHHHHHhcC
Q 017298 291 ESSYATFARSASG 303 (374)
Q Consensus 291 ~~~~p~fs~~~~~ 303 (374)
....|.+.++.+|
T Consensus 91 ~~vip~l~~l~ke 103 (434)
T 2zjs_Y 91 VTVVPALEKLSKE 103 (434)
T ss_dssp HHHSHHHHHHHTS
T ss_pred HHHhcchhhhhhc
Confidence 4567888888654
No 9
>1wrg_A LH-1, light-harvesting protein B-880, beta chain; membrane protein, pigment binding, photosynthesis; NMR {Rhodospirillum rubrum}
Probab=2.39 E-value=1.4e+03 Score=14.72 Aligned_cols=6 Identities=17% Similarity=0.014 Sum_probs=3.5
Q ss_pred cccccc
Q 017298 218 DLFPFR 223 (374)
Q Consensus 218 ~~~p~~ 223 (374)
+|+|..
T Consensus 46 PWl~g~ 51 (55)
T 1wrg_A 46 PWVPGP 51 (55)
T ss_dssp SSSCCS
T ss_pred ccCCCc
Confidence 367664
No 10
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=2.36 E-value=1.6e+03 Score=15.50 Aligned_cols=39 Identities=10% Similarity=0.048 Sum_probs=0.0
Q ss_pred CccchhhhhHHHHHHHHHHHHhHHHHHHHHHHHHhhCchh
Q 017298 6 VDHSTSLSRTFKYLLATQFLSRGIPFVFNSWIVRHLTEAD 45 (374)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~r~i~fi~~~ilaRlL~P~~ 45 (374)
.++..+..||+.| ...-++.-..-.+..-.+-|+|+.+.
T Consensus 20 ~~i~~qMlkGAg~-AAv~f~~~~~~lv~l~~iG~~LPE~S 58 (77)
T 2dw3_A 20 LWVAFQMMKGAGW-AGGVFFGTLLLIGFFRVVGRMLPIQE 58 (77)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCTTTTC
T ss_pred HHHHHHHHhcccH-HHHHHHHHHHHHHHHHHHHHhCchhc
Done!