Query 017298
Match_columns 374
No_of_seqs 126 out of 468
Neff 8.5
Searched_HMMs 13730
Date Mon Mar 25 12:10:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017298.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017298hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1j2jb_ a.7.8.1 (B:) ADP-ribos 16.2 80 0.0058 17.8 3.3 25 296-320 10-34 (41)
2 d3dtub2 f.17.2.1 (B:30-129) Ba 9.3 2.6E+02 0.019 18.5 7.6 17 90-106 69-85 (100)
3 d1fftb2 f.17.2.1 (B:27-117) Cy 5.5 1E+02 0.0076 20.4 1.2 16 90-105 60-75 (91)
4 d1pfva1 a.27.1.1 (A:389-550) M 4.9 3.6E+02 0.026 19.3 4.3 39 310-348 83-121 (162)
5 d1pw4a_ f.38.1.1 (A:) Glycerol 4.7 7.4E+02 0.054 19.5 7.3 55 235-289 20-82 (447)
6 d2d5ba1 a.27.1.1 (A:349-500) M 4.0 4.1E+02 0.03 18.6 4.0 37 310-346 84-120 (152)
7 d3ehbb2 f.17.2.1 (B:1-107) Bac 3.9 5.5E+02 0.04 16.9 8.0 16 90-105 75-90 (107)
8 d1nkzb_ f.3.1.1 (B:) Light-har 2.6 4.8E+02 0.035 14.3 2.2 20 310-329 9-28 (41)
9 d1rqga1 a.27.1.1 (A:397-606) M 2.5 7.5E+02 0.055 18.0 4.4 38 310-347 88-125 (210)
10 d1eg3a2 a.39.1.7 (A:210-306) D 2.4 8.3E+02 0.06 16.0 4.0 38 290-327 3-40 (97)
No 1
>d1j2jb_ a.7.8.1 (B:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.21 E-value=80 Score=17.77 Aligned_cols=25 Identities=16% Similarity=0.256 Sum_probs=17.1
Q ss_pred HHHHHhcCCCchhhHHHHHHHHHHH
Q 017298 296 TFARSASGQYPQKSKKIGNSLAEAL 320 (374)
Q Consensus 296 ~fs~~~~~~~~~~~~~~~~~~~~~l 320 (374)
.+.++..++++++.+...+..+.++
T Consensus 10 lL~~LLkS~~PeDLqaANrLIK~mV 34 (41)
T d1j2jb_ 10 MLARLLKSSHPEDLRAANKLIKEMV 34 (41)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 4567777888888877666555444
No 2
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=9.33 E-value=2.6e+02 Score=18.52 Aligned_cols=17 Identities=29% Similarity=0.772 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 017298 90 KLLKVAWLTLPLGIFIT 106 (374)
Q Consensus 90 ~~~~~~~~~i~~g~~~~ 106 (374)
+.+...|+.+|.-+++.
T Consensus 69 ~~LEiiWTviP~lILi~ 85 (100)
T d3dtub2 69 SPLEIAWTIVPIVILVA 85 (100)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHH
Confidence 45778998888655443
No 3
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=5.45 E-value=1e+02 Score=20.42 Aligned_cols=16 Identities=25% Similarity=0.374 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 017298 90 KLLKVAWLTLPLGIFI 105 (374)
Q Consensus 90 ~~~~~~~~~i~~g~~~ 105 (374)
+.+...|+.+|.-+++
T Consensus 60 ~~lEi~WtiIP~iil~ 75 (91)
T d1fftb2 60 NKVEAVVWTVPILIII 75 (91)
T ss_dssp SHHHHHTTHHHHHHHH
T ss_pred ceehhhHHHHHHHHHH
Confidence 3567899878865444
No 4
>d1pfva1 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]}
Probab=4.90 E-value=3.6e+02 Score=19.25 Aligned_cols=39 Identities=8% Similarity=0.054 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhcC
Q 017298 310 KKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYGK 348 (374)
Q Consensus 310 ~~~~~~~~~~l~~~~~l~~~~~~~~~~~a~~lv~ll~G~ 348 (374)
+++...+..++...-.++..+-++.|-.|+.+...+.-+
T Consensus 83 ~~~~~vl~~~~~~lr~~~~lL~P~mP~~s~ki~~~L~~~ 121 (162)
T d1pfva1 83 ADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLNTE 121 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCC
Confidence 445556777777777788888888898898888876543
No 5
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=4.69 E-value=7.4e+02 Score=19.51 Aligned_cols=55 Identities=2% Similarity=-0.238 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhc--------cCCccchHHHHHhhhhhhHHHHhhhhh
Q 017298 235 ANMCTLFTFQSFRKLLLQEGEKLVLVWL--------DTPYNQAVYGLVDKLGSLVVRMVFLPF 289 (374)
Q Consensus 235 ~~f~~~l~~~si~~~~l~~~D~lvig~~--------~~~~~~G~Y~~a~~l~sl~~r~i~~pi 289 (374)
-++-+.+.....+.+.....|+..++-. .+.++.|.-.-++.++..+...+..++
T Consensus 20 ~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l 82 (447)
T d1pw4a_ 20 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSV 82 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555556666777776555543 356777777666666665554444443
No 6
>d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]}
Probab=3.95 E-value=4.1e+02 Score=18.57 Aligned_cols=37 Identities=14% Similarity=0.099 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHh
Q 017298 310 KKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLY 346 (374)
Q Consensus 310 ~~~~~~~~~~l~~~~~l~~~~~~~~~~~a~~lv~ll~ 346 (374)
++.+......+...-.++..+-.+.|-.++.+...+.
T Consensus 84 ~~~~~vl~~~l~~lr~l~ilL~P~mP~~~~ki~~~Lg 120 (152)
T d2d5ba1 84 EEARAVLYRVVEGLRIASILLTPAMPDKMAELRRALG 120 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHcC
Confidence 3445566667777777777778888888888888765
No 7
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=3.94 E-value=5.5e+02 Score=16.91 Aligned_cols=16 Identities=25% Similarity=0.665 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 017298 90 KLLKVAWLTLPLGIFI 105 (374)
Q Consensus 90 ~~~~~~~~~i~~g~~~ 105 (374)
+.+...|+.+|.-+++
T Consensus 75 ~~lEi~WTviP~lIL~ 90 (107)
T d3ehbb2 75 TPIEVIWTLVPVLILV 90 (107)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4677899888864443
No 8
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=2.63 E-value=4.8e+02 Score=14.25 Aligned_cols=20 Identities=15% Similarity=0.343 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 017298 310 KKIGNSLAEALKLVLLIGLV 329 (374)
Q Consensus 310 ~~~~~~~~~~l~~~~~l~~~ 329 (374)
+++.+....-.|....+++.
T Consensus 9 EElHk~vIdGtRvF~~iA~~ 28 (41)
T d1nkzb_ 9 EELHKYVIDGTRVFLGLALV 28 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcchHHHHHHHHH
Confidence 44555555566666655553
No 9
>d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]}
Probab=2.51 E-value=7.5e+02 Score=17.98 Aligned_cols=38 Identities=24% Similarity=0.376 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhc
Q 017298 310 KKIGNSLAEALKLVLLIGLVFMAFGPSYSYSLVRLLYG 347 (374)
Q Consensus 310 ~~~~~~~~~~l~~~~~l~~~~~~~~~~~a~~lv~ll~G 347 (374)
++........+...-.++..+-+|.|-.|+.+...|.-
T Consensus 88 ~~~~~vl~~~~~~~~~l~ilL~PfmP~~a~~i~~~Lg~ 125 (210)
T d1rqga1 88 VRTGTTVNISLQIVKALGILLEPFLPDASEKIWHLLNL 125 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCC
Confidence 34445666677777777777888889889888887753
No 10
>d1eg3a2 a.39.1.7 (A:210-306) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.40 E-value=8.3e+02 Score=15.99 Aligned_cols=38 Identities=18% Similarity=0.260 Sum_probs=25.1
Q ss_pred hhhhHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHH
Q 017298 290 EESSYATFARSASGQYPQKSKKIGNSLAEALKLVLLIG 327 (374)
Q Consensus 290 ~~~~~p~fs~~~~~~~~~~~~~~~~~~~~~l~~~~~l~ 327 (374)
++-.+-.|+++.+.+..-+.+++...++.++++-..++
T Consensus 3 ~dKyRYlF~qisd~~g~~~~~kl~~lL~d~lqlP~~vg 40 (97)
T d1eg3a2 3 EDKYRYLFKQVASSTGFCDQRRLGLLLHDSIQIPRQLG 40 (97)
T ss_dssp HHHHHHHHHHHSCTTSCBCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHhC
Confidence 44555567777655555556777777787887777665
Done!