Query 017299
Match_columns 374
No_of_seqs 184 out of 816
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 07:20:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017299.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017299hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1021 Acetylglucosaminyltran 100.0 2.1E-58 4.5E-63 469.0 24.9 337 25-365 97-461 (464)
2 PF03016 Exostosin: Exostosin 100.0 3.3E-58 7.1E-63 442.4 20.8 276 40-317 2-302 (302)
3 KOG2264 Exostosin EXT1L [Signa 100.0 1.3E-32 2.7E-37 271.7 15.4 299 35-365 186-531 (907)
4 KOG1022 Acetylglucosaminyltran 99.9 8.8E-24 1.9E-28 208.6 16.3 300 35-361 90-409 (691)
5 PF00852 Glyco_transf_10: Glyc 97.3 0.00079 1.7E-08 66.8 8.2 140 178-324 140-304 (349)
6 cd03801 GT1_YqgM_like This fam 97.3 0.0022 4.7E-08 60.6 10.9 94 243-339 267-363 (374)
7 PLN02871 UDP-sulfoquinovose:DA 97.0 0.0041 8.9E-08 63.7 10.7 100 243-345 323-427 (465)
8 cd03820 GT1_amsD_like This fam 97.0 0.0065 1.4E-07 57.2 11.1 96 243-340 244-341 (348)
9 PF00534 Glycos_transf_1: Glyc 97.0 0.0019 4.1E-08 56.3 6.6 84 243-329 84-169 (172)
10 cd03822 GT1_ecORF704_like This 97.0 0.0051 1.1E-07 59.0 10.1 93 244-340 260-356 (366)
11 cd03821 GT1_Bme6_like This fam 96.8 0.0077 1.7E-07 57.4 10.2 92 244-340 274-368 (375)
12 cd05844 GT1_like_7 Glycosyltra 96.8 0.014 3.1E-07 56.7 12.0 102 236-340 248-359 (367)
13 cd03818 GT1_ExpC_like This fam 96.8 0.011 2.3E-07 59.1 11.1 117 220-339 266-388 (396)
14 cd03814 GT1_like_2 This family 96.8 0.0034 7.3E-08 60.1 7.0 93 244-339 259-353 (364)
15 cd03819 GT1_WavL_like This fam 96.7 0.018 4E-07 55.4 11.4 95 242-339 254-353 (355)
16 cd03794 GT1_wbuB_like This fam 96.7 0.013 2.8E-07 56.0 10.3 95 243-340 286-388 (394)
17 cd03808 GT1_cap1E_like This fa 96.6 0.019 4.2E-07 54.2 10.6 92 244-338 256-350 (359)
18 cd03809 GT1_mtfB_like This fam 96.6 0.0099 2.1E-07 57.0 8.7 92 244-340 265-358 (365)
19 TIGR03088 stp2 sugar transfera 96.5 0.017 3.7E-07 56.7 10.4 95 243-340 264-361 (374)
20 TIGR03449 mycothiol_MshA UDP-N 96.5 0.022 4.8E-07 56.6 11.3 105 235-342 285-392 (405)
21 cd04962 GT1_like_5 This family 96.2 0.05 1.1E-06 52.9 11.2 93 244-339 263-358 (371)
22 PRK15427 colanic acid biosynth 96.2 0.049 1.1E-06 55.0 11.4 93 244-339 291-393 (406)
23 cd03823 GT1_ExpE7_like This fa 96.1 0.037 8E-07 52.7 9.7 86 243-331 254-342 (359)
24 cd03807 GT1_WbnK_like This fam 96.0 0.045 9.6E-07 51.9 9.9 92 244-340 261-355 (365)
25 cd03798 GT1_wlbH_like This fam 95.9 0.03 6.6E-07 53.0 8.1 93 244-339 271-364 (377)
26 PRK10307 putative glycosyl tra 95.8 0.046 1E-06 54.7 9.4 102 237-341 288-397 (412)
27 cd03800 GT1_Sucrose_synthase T 95.8 0.028 6.1E-07 55.1 7.6 94 244-340 295-391 (398)
28 TIGR02149 glgA_Coryne glycogen 95.8 0.071 1.5E-06 52.4 10.4 94 244-340 273-375 (388)
29 cd04951 GT1_WbdM_like This fam 95.7 0.082 1.8E-06 50.8 10.2 91 244-339 255-348 (360)
30 cd03804 GT1_wbaZ_like This fam 95.6 0.038 8.2E-07 53.8 7.7 79 235-317 244-323 (351)
31 PRK15484 lipopolysaccharide 1, 95.6 0.09 2E-06 52.4 10.4 95 244-341 269-367 (380)
32 TIGR02095 glgA glycogen/starch 95.6 0.086 1.9E-06 54.1 10.5 93 244-341 358-462 (473)
33 cd03817 GT1_UGDG_like This fam 95.6 0.15 3.3E-06 48.5 11.6 90 243-336 270-361 (374)
34 cd03805 GT1_ALG2_like This fam 95.5 0.13 2.9E-06 50.5 11.3 104 233-340 280-387 (392)
35 PRK14098 glycogen synthase; Pr 95.5 0.086 1.9E-06 54.7 10.1 94 244-342 374-476 (489)
36 cd04949 GT1_gtfA_like This fam 95.5 0.1 2.2E-06 51.1 10.1 94 244-339 271-366 (372)
37 PRK14099 glycogen synthase; Pr 95.4 0.15 3.3E-06 52.7 11.5 94 244-342 361-469 (485)
38 cd03806 GT1_ALG11_like This fa 95.4 0.14 3E-06 51.9 10.9 130 207-340 273-415 (419)
39 PRK00654 glgA glycogen synthas 95.1 0.15 3.2E-06 52.4 10.2 92 245-341 350-452 (466)
40 cd03795 GT1_like_4 This family 95.0 0.23 4.9E-06 47.7 10.7 93 244-339 256-354 (357)
41 PRK09814 beta-1,6-galactofuran 95.0 0.055 1.2E-06 53.0 6.5 87 244-336 219-316 (333)
42 PF13524 Glyco_trans_1_2: Glyc 94.7 0.074 1.6E-06 41.6 5.4 80 255-339 2-84 (92)
43 cd04955 GT1_like_6 This family 94.5 0.4 8.6E-06 46.2 11.1 99 236-340 251-353 (363)
44 cd03816 GT1_ALG1_like This fam 94.4 0.27 5.8E-06 49.7 10.1 119 207-333 269-399 (415)
45 cd03802 GT1_AviGT4_like This f 94.3 0.34 7.4E-06 46.1 10.1 78 235-317 226-305 (335)
46 cd03799 GT1_amsK_like This is 94.3 0.38 8.1E-06 46.1 10.3 95 243-340 247-350 (355)
47 cd03792 GT1_Trehalose_phosphor 94.2 0.4 8.8E-06 47.2 10.7 93 243-340 265-360 (372)
48 cd03813 GT1_like_3 This family 94.2 0.29 6.3E-06 50.4 10.0 93 244-339 363-464 (475)
49 cd03791 GT1_Glycogen_synthase_ 94.1 0.3 6.5E-06 49.8 9.8 92 244-340 363-465 (476)
50 cd03811 GT1_WabH_like This fam 93.7 0.88 1.9E-05 42.5 11.6 89 244-335 256-350 (353)
51 cd04946 GT1_AmsK_like This fam 93.5 0.72 1.6E-05 46.4 11.2 92 244-338 301-398 (407)
52 cd03796 GT1_PIG-A_like This fa 93.5 0.36 7.9E-06 48.1 8.9 102 238-344 255-360 (398)
53 PRK09922 UDP-D-galactose:(gluc 93.5 0.5 1.1E-05 46.4 9.7 72 244-317 250-321 (359)
54 PLN02949 transferase, transfer 93.3 1.4 3.1E-05 45.4 13.0 102 235-340 337-445 (463)
55 TIGR03087 stp1 sugar transfera 93.3 0.29 6.3E-06 48.8 7.8 91 244-340 290-385 (397)
56 cd03812 GT1_CapH_like This fam 92.8 0.88 1.9E-05 43.7 10.1 72 242-317 257-328 (358)
57 TIGR02472 sucr_P_syn_N sucrose 92.5 0.23 5E-06 50.5 6.0 85 253-340 342-429 (439)
58 PF13692 Glyco_trans_1_4: Glyc 92.5 0.14 3.1E-06 42.4 3.6 74 237-316 57-131 (135)
59 TIGR02918 accessory Sec system 92.1 2.7 5.9E-05 43.8 13.4 93 244-339 385-487 (500)
60 PRK15490 Vi polysaccharide bio 91.3 1.5 3.3E-05 46.2 10.3 64 244-310 465-528 (578)
61 KOG2619 Fucosyltransferase [Ca 91.1 1.5 3.3E-05 43.7 9.6 143 177-324 160-325 (372)
62 cd03825 GT1_wcfI_like This fam 91.0 0.49 1.1E-05 45.5 6.1 92 244-338 257-351 (365)
63 PHA01633 putative glycosyl tra 90.5 0.5 1.1E-05 46.7 5.7 40 244-284 216-255 (335)
64 PHA01630 putative group 1 glyc 89.4 0.82 1.8E-05 44.9 6.3 39 244-283 202-240 (331)
65 PLN02605 monogalactosyldiacylg 88.5 5.9 0.00013 39.4 11.7 78 244-331 275-361 (382)
66 TIGR02468 sucrsPsyn_pln sucros 88.3 2.2 4.7E-05 48.2 9.1 86 254-342 574-661 (1050)
67 PLN02939 transferase, transfer 87.9 2.2 4.7E-05 47.7 8.7 94 247-344 852-959 (977)
68 PLN02316 synthase/transferase 86.5 4.6 0.0001 45.6 10.4 97 247-345 915-1027(1036)
69 cd03793 GT1_Glycogen_synthase_ 83.2 2.1 4.5E-05 45.3 5.5 99 243-342 466-577 (590)
70 PF00919 UPF0004: Uncharacteri 80.9 2.2 4.9E-05 34.3 3.8 33 66-99 9-42 (98)
71 TIGR01133 murG undecaprenyldip 80.5 3.3 7.1E-05 40.0 5.6 83 244-331 243-334 (348)
72 PRK13608 diacylglycerol glucos 79.3 16 0.00035 36.4 10.3 82 244-334 266-354 (391)
73 KOG1387 Glycosyltransferase [C 76.7 11 0.00023 37.5 7.6 91 244-336 349-443 (465)
74 PLN00142 sucrose synthase 76.1 6.2 0.00013 43.5 6.5 87 253-342 668-761 (815)
75 cd01635 Glycosyltransferase_GT 75.7 14 0.00031 32.2 7.9 76 207-284 135-213 (229)
76 cd04950 GT1_like_1 Glycosyltra 74.5 3.3 7.2E-05 40.9 3.8 66 244-316 266-336 (373)
77 PRK15179 Vi polysaccharide bio 73.3 21 0.00046 38.9 9.7 92 244-340 584-682 (694)
78 smart00672 CAP10 Putative lipo 71.6 31 0.00067 32.7 9.4 128 201-331 78-227 (256)
79 COG0438 RfaG Glycosyltransfera 70.7 29 0.00062 31.6 9.0 46 238-284 262-308 (381)
80 TIGR02470 sucr_synth sucrose s 70.0 11 0.00025 41.4 6.8 87 253-342 645-738 (784)
81 cd03785 GT1_MurG MurG is an N- 68.8 16 0.00035 35.2 7.1 82 244-331 245-337 (350)
82 PRK00726 murG undecaprenyldiph 67.7 8.9 0.00019 37.3 5.0 84 244-331 245-337 (357)
83 TIGR00236 wecB UDP-N-acetylglu 67.6 58 0.0013 31.8 10.9 125 210-355 233-361 (365)
84 PLN02275 transferase, transfer 67.3 18 0.00038 35.8 7.1 92 207-303 261-358 (371)
85 cd03788 GT1_TPS Trehalose-6-Ph 66.8 6.8 0.00015 40.3 4.2 88 243-335 352-445 (460)
86 PRK05749 3-deoxy-D-manno-octul 62.9 13 0.00027 37.4 5.2 86 244-333 312-403 (425)
87 PRK10125 putative glycosyl tra 62.8 21 0.00045 36.0 6.8 66 244-313 299-364 (405)
88 PRK13609 diacylglycerol glucos 62.4 71 0.0015 31.3 10.4 80 244-332 266-352 (380)
89 TIGR02400 trehalose_OtsA alpha 58.9 27 0.00059 35.9 6.9 83 243-331 347-436 (456)
90 TIGR03590 PseG pseudaminic aci 57.0 24 0.00053 33.6 5.8 33 244-282 234-266 (279)
91 PF05686 Glyco_transf_90: Glyc 53.0 59 0.0013 32.8 8.0 127 201-329 152-294 (395)
92 PLN02501 digalactosyldiacylgly 44.8 66 0.0014 35.3 7.1 37 247-284 614-650 (794)
93 PRK14862 rimO ribosomal protei 40.9 38 0.00082 34.7 4.5 47 38-99 3-50 (440)
94 PRK00025 lpxB lipid-A-disaccha 40.4 43 0.00093 32.7 4.8 85 244-335 254-358 (380)
95 KOG3185 Translation initiation 38.9 26 0.00055 31.8 2.5 32 251-282 20-51 (245)
96 PLN02846 digalactosyldiacylgly 37.9 79 0.0017 32.7 6.3 38 247-285 296-333 (462)
97 PRK14333 (dimethylallyl)adenos 36.4 45 0.00097 34.2 4.2 41 44-99 8-49 (448)
98 PLN03063 alpha,alpha-trehalose 35.3 91 0.002 34.6 6.6 85 243-331 367-457 (797)
99 COG0297 GlgA Glycogen synthase 35.0 1.1E+02 0.0024 31.9 6.9 99 244-344 361-470 (487)
100 PRK14340 (dimethylallyl)adenos 34.3 53 0.0011 33.7 4.4 34 65-99 15-49 (445)
101 PRK14338 (dimethylallyl)adenos 33.3 57 0.0012 33.6 4.4 33 66-99 30-63 (459)
102 PF13528 Glyco_trans_1_3: Glyc 32.4 79 0.0017 30.0 5.1 36 243-283 242-277 (318)
103 PRK14328 (dimethylallyl)adenos 31.4 60 0.0013 33.1 4.2 33 66-99 11-44 (439)
104 PRK14336 (dimethylallyl)adenos 31.3 65 0.0014 32.7 4.5 34 65-99 10-44 (418)
105 PF06258 Mito_fiss_Elm1: Mitoc 30.5 1.3E+02 0.0027 29.5 6.1 37 243-283 220-256 (311)
106 PRK14334 (dimethylallyl)adenos 29.6 71 0.0015 32.6 4.4 34 65-99 9-43 (440)
107 PF07038 DUF1324: Protein of u 29.4 37 0.00081 23.5 1.5 39 250-291 7-46 (59)
108 PRK14335 (dimethylallyl)adenos 29.4 69 0.0015 32.9 4.3 34 65-99 9-43 (455)
109 TIGR00661 MJ1255 conserved hyp 28.2 1.2E+02 0.0027 29.1 5.6 66 244-315 240-310 (321)
110 PRK14331 (dimethylallyl)adenos 27.8 80 0.0017 32.2 4.4 33 66-99 10-43 (437)
111 PRK14325 (dimethylallyl)adenos 27.0 81 0.0018 32.2 4.3 33 66-99 13-46 (444)
112 COG0621 MiaB 2-methylthioadeni 25.5 76 0.0016 32.6 3.7 42 315-357 275-322 (437)
113 PRK14332 (dimethylallyl)adenos 24.6 1.1E+02 0.0024 31.5 4.7 33 66-99 20-53 (449)
114 TIGR01574 miaB-methiolase tRNA 24.4 96 0.0021 31.6 4.3 34 65-99 8-43 (438)
115 TIGR00089 RNA modification enz 23.9 1E+02 0.0022 31.3 4.3 34 65-99 8-42 (429)
116 TIGR02094 more_P_ylases alpha- 23.7 8E+02 0.017 26.3 11.1 134 206-341 423-590 (601)
117 TIGR01578 MiaB-like-B MiaB-lik 23.4 1E+02 0.0022 31.2 4.2 34 65-99 8-42 (420)
118 PRK14329 (dimethylallyl)adenos 22.8 1.1E+02 0.0024 31.5 4.4 33 66-99 33-66 (467)
119 cd02133 PA_C5a_like PA_C5a_lik 22.7 1.7E+02 0.0037 24.7 4.9 42 244-285 40-81 (143)
120 COG2355 Zn-dependent dipeptida 22.6 42 0.00092 32.9 1.2 71 259-329 145-215 (313)
121 COG0707 MurG UDP-N-acetylgluco 21.0 8.3E+02 0.018 24.3 11.7 81 244-332 245-338 (357)
122 TIGR01125 MiaB-like tRNA modif 20.5 1.3E+02 0.0027 30.7 4.2 34 65-99 8-42 (430)
123 PRK14326 (dimethylallyl)adenos 20.3 1.5E+02 0.0032 31.0 4.7 33 66-99 23-56 (502)
No 1
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=100.00 E-value=2.1e-58 Score=468.96 Aligned_cols=337 Identities=34% Similarity=0.596 Sum_probs=273.5
Q ss_pred cccChhhhhhchhhhcCCCeEEEeCCCCCCCCccccCCcCCCCCCCchhHHHHHHHH--hcCCccCCCCCCccEEEEecc
Q 017299 25 VFHDRDIFLEDYKQMNRSFRVYVYPHRRNDPFANVLLPVDFEPRGNYASESYFKKVF--MKSHFVTKDPSKADLFFLPFS 102 (374)
Q Consensus 25 ~~~~~~~f~~~y~~~~~~~kIYVY~~~~~~~~~~~~~p~~~~~~~~y~~E~~~~~~L--~~S~~rT~dP~eAdlF~vP~~ 102 (374)
.+++...|..+|..++..+|||+|..+..+.++. + .++..++|++|.+||..+ ..+++||.||++||+||||||
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~w~~~~~~~~E~~~~~~~~~~~~~~Rt~dp~~Ad~f~vPf~ 172 (464)
T KOG1021|consen 97 TSPNNKKFMCSYKLNEKRGKVYVYHEGNKPLFHT---P-SWCLTDQYASEGIFHNRMLRRESAFRTLDPLEADAFYVPFY 172 (464)
T ss_pred ccCcchhhhhhhhhhcccCceEEecCCCCccccC---C-CcccccchhHHHHHHHHHhcccCceecCChhhCcEEEEcce
Confidence 4677777888999999999999999985554543 2 246789999999999999 578999999999999999999
Q ss_pred cccccccC-CCC----CCChhhHHHHHHHHhhhcCCccccCCCCceEEEeecCCCchhhhhhHHHhhceeeEeeccCccc
Q 017299 103 IARMRHDR-RIG----TEGIPDFISHYIFNISQKYPYWNRTGGADHFYVACHSIGRSAMEKAWEVKLNAIQVVCSSSYFI 177 (374)
Q Consensus 103 ~~~~~~~~-~~~----~~~~~~~l~~~v~~l~~~~PyWnr~~G~dH~~v~~~d~g~~~~~~~~~~~~nai~~~~~~~~~~ 177 (374)
.++..... ..+ .......+++++..+++++|||||++|+||||+++|+|+............+.|...++.....
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~W~Rs~G~DH~~v~~~~~~~~~~~~~~~~~~~~i~~~~n~a~ls 252 (464)
T KOG1021|consen 173 ASLDYNRALLWPDERVNAILRSILQDYIVALLSKQPYWNRSSGRDHFFVACHDWGDFRRRSDWGASISLIPEFCNGALLS 252 (464)
T ss_pred eeEehhhhcccCCcccchHHHHHHHHHHHHHHhcCchhhccCCCceEEEeCCcchheeeccchhhHHHHHHhhCCcceee
Confidence 88755311 111 1234667778888888999999999999999999999987654211112222222233323355
Q ss_pred CCcccC-CccccCCcCCCCC---C----CCCCCCCCCceEEEEecc-CCchHHHHHHHHHhcCC----CceeccCcc---
Q 017299 178 SGHIAH-KDVSLPQIWPRQE---D----PPKLGSSKRNKLAFFAGA-VNSPVREKLLQVWRNDS----EIYAHSGRL--- 241 (374)
Q Consensus 178 ~~frp~-kDv~iP~~~~~~~---~----~~~~~~~~R~~l~~F~G~-~~~~~R~~L~~~~~~~~----~~~~~~g~~--- 241 (374)
..+.+. +||+||+...... . ....+..+|++|++|+|+ .++.+|+.|+++|++.+ ......|.+
T Consensus 253 ~~~~~~~~dv~iP~~~~~~~~~~~~~~~~~~~~~~~R~~L~~F~G~~~~~~iR~~L~~~~~~~~~~~~~~~~~~g~~~~~ 332 (464)
T KOG1021|consen 253 LEFFPWNKDVAIPYPTIPHPLSPPENSWQGGVPFSNRPILAFFAGAPAGGQIRSILLDLWKKDPDTEVFVNCPRGKVSCD 332 (464)
T ss_pred cccccCCCcccCCCccCcCccCccccccccCCCCCCCceEEEEeccccCCcHHHHHHHHhhcCcCccccccCCCCccccC
Confidence 677788 9999998743321 1 224456799999999999 89999999999999822 122223422
Q ss_pred -cchHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEecccccCCCCCCCCCcEEEEEcCCChhhH-HHHHhcCCH
Q 017299 242 -KTPYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLL-KKILKGISS 319 (374)
Q Consensus 242 -~~~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~iDw~~fsV~v~e~~v~~l-~~~L~~i~~ 319 (374)
+..|.+.|++|+|||||+|++++|.|+||||.+|||||||+|++.+||++++||++|||+|++++++++ .++|.+|+.
T Consensus 333 ~~~~y~~~m~~S~FCL~p~Gd~~ts~R~fdai~~gCvPViisd~~~lpf~~~~d~~~fSV~v~~~~v~~~~~~iL~~i~~ 412 (464)
T KOG1021|consen 333 RPLNYMEGMQDSKFCLCPPGDTPTSPRLFDAIVSGCVPVIISDGIQLPFGDVLDWTEFSVFVPEKDVPELIKNILLSIPE 412 (464)
T ss_pred CcchHHHHhhcCeEEECCCCCCcccHhHHHHHHhCCccEEEcCCcccCcCCCccceEEEEEEEHHHhhhHHHHHHHhcCH
Confidence 359999999999999999999999999999999999999999999999999999999999999999998 999999999
Q ss_pred HHHHHHHHHHH-hhhccceecc--CCCCccHHHHHHHHHHHHHhhcccc
Q 017299 320 EEYLLLQNNVL-KVRKHFQWHV--FPSDYDAFYMVMYDLWLRRSSVRVQ 365 (374)
Q Consensus 320 ~~i~~mq~~l~-~v~~~f~y~~--~~~~~DAf~~~~~~l~~rr~~~r~~ 365 (374)
+++.+||+++. .+.+||++.. +.+.+|||++++.++|+|++..+..
T Consensus 413 ~~~~~m~~~v~~~v~r~~~~~~~~~~~~~da~~~~~~~v~~r~~~~~~~ 461 (464)
T KOG1021|consen 413 EEVLRMRENVIRLVPRHFLKKPPGPPKRGDAFHMILHSLWRRLHKLRSR 461 (464)
T ss_pred HHHHHHHHHHHHHHHhhEEeCCCCCCCcchhHHHHHhhhhhcccccccc
Confidence 99999999999 4999999998 7888999999999999999987744
No 2
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=100.00 E-value=3.3e-58 Score=442.36 Aligned_cols=276 Identities=34% Similarity=0.609 Sum_probs=223.8
Q ss_pred cCCCeEEEeCCCCCCCCccccCC------cCCCCCCCchhHHHHHHHHhcCCccCCCCCCccEEEEecccccccc-cCCC
Q 017299 40 NRSFRVYVYPHRRNDPFANVLLP------VDFEPRGNYASESYFKKVFMKSHFVTKDPSKADLFFLPFSIARMRH-DRRI 112 (374)
Q Consensus 40 ~~~~kIYVY~~~~~~~~~~~~~p------~~~~~~~~y~~E~~~~~~L~~S~~rT~dP~eAdlF~vP~~~~~~~~-~~~~ 112 (374)
.++|||||||+| ++|+..++. ..++...+|++|.+|++.|++|+++|.||+|||+||||++..+... ..+.
T Consensus 2 ~~~lkVYVY~lp--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~l~~s~~~T~dp~eAdlF~vP~~~~~~~~~~~~~ 79 (302)
T PF03016_consen 2 HRGLKVYVYPLP--PKFNKDLLDPREDEQCSWYETSQYALEVILHEALLNSPFRTDDPEEADLFFVPFYSSCYFHHWWGS 79 (302)
T ss_pred CCCCEEEEEeCC--ccccccceeccccccCCCcccccchHHHHHHHHHHhCCcEeCCHHHCeEEEEEcccccccccccCC
Confidence 368999999999 567766651 2245668999999999999999999999999999999999887621 0000
Q ss_pred -CCCChhhHHHHHHHHhhhcCCccccCCCCceEEEeecCCCchhhhhhHHHhhceeeEe-eccCcccCCcccCCccccCC
Q 017299 113 -GTEGIPDFISHYIFNISQKYPYWNRTGGADHFYVACHSIGRSAMEKAWEVKLNAIQVV-CSSSYFISGHIAHKDVSLPQ 190 (374)
Q Consensus 113 -~~~~~~~~l~~~v~~l~~~~PyWnr~~G~dH~~v~~~d~g~~~~~~~~~~~~nai~~~-~~~~~~~~~frp~kDv~iP~ 190 (374)
........+..++..+++++|||||++|+||||+++||+|.+.....+.+..+++.++ ..+.+...+|+|++||++|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~p~w~r~~G~dH~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~P~ 159 (302)
T PF03016_consen 80 PNSGADRDSLSDALRHLLASYPYWNRSGGRDHFFVNSHDRGGCSFDRNPRLMNNSIRAVVAFSSFSSSCFRPGFDIVIPP 159 (302)
T ss_pred ccchhhHHHHHHHHHHHHhcCchhhccCCCCeEEEeccccccccccccHhhhccchhheeccCCCCcCcccCCCCeeccc
Confidence 1112344556677777889999999999999999999998887655555666666554 34556789999999999998
Q ss_pred cCCCCC-C----CCCCCCCCCceEEEEeccCC-------chHHHHHHHHHhcCCCceeccCc----ccchHHhhhcCCcE
Q 017299 191 IWPRQE-D----PPKLGSSKRNKLAFFAGAVN-------SPVREKLLQVWRNDSEIYAHSGR----LKTPYADGLLGSKF 254 (374)
Q Consensus 191 ~~~~~~-~----~~~~~~~~R~~l~~F~G~~~-------~~~R~~L~~~~~~~~~~~~~~g~----~~~~y~~~l~~S~F 254 (374)
..+... . ....++.+|++|++|+|++. +.+|+.|.+.|++.++..+..+. .+.+|.+.|++|+|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~R~~l~~f~g~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~F 239 (302)
T PF03016_consen 160 FVPPSSLPDWRPWPQRPPARRPYLLFFAGTIRPSSNDYSGGVRQRLLDECKSDPDFRCSDGSETCPSPSEYMELLRNSKF 239 (302)
T ss_pred cccccccCCccccccCCccCCceEEEEeeeccccccccchhhhhHHHHhcccCCcceeeecccccccchHHHHhcccCeE
Confidence 765442 1 12345789999999999842 47999999999887765433221 13479999999999
Q ss_pred EEeeCCCCCCchhHHHHHhcCceeEEEecccccCCCCCCCCCcEEEEEcCCChhhHHHHHhcC
Q 017299 255 CLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKGI 317 (374)
Q Consensus 255 CL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~iDw~~fsV~v~e~~v~~l~~~L~~i 317 (374)
||+|+|+++++.||+|||.+|||||||+|++.|||+++|||++|||+|+++++++|+++|++|
T Consensus 240 CL~p~G~~~~s~Rl~eal~~GcIPVii~d~~~lPf~~~ldw~~fsv~v~~~~~~~l~~iL~~i 302 (302)
T PF03016_consen 240 CLCPRGDGPWSRRLYEALAAGCIPVIISDDYVLPFEDVLDWSRFSVRVPEADLPELPEILRSI 302 (302)
T ss_pred EEECCCCCcccchHHHHhhhceeeEEecCcccCCcccccCHHHEEEEECHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999986
No 3
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-32 Score=271.71 Aligned_cols=299 Identities=18% Similarity=0.278 Sum_probs=214.0
Q ss_pred chhhhc--CCCeEEEeCCCCCCCCccccCCcCCCCCCCch---hHHHHHHHHhcCCccCCCCCCccEEEEeccccccccc
Q 017299 35 DYKQMN--RSFRVYVYPHRRNDPFANVLLPVDFEPRGNYA---SESYFKKVFMKSHFVTKDPSKADLFFLPFSIARMRHD 109 (374)
Q Consensus 35 ~y~~~~--~~~kIYVY~~~~~~~~~~~~~p~~~~~~~~y~---~E~~~~~~L~~S~~rT~dP~eAdlF~vP~~~~~~~~~ 109 (374)
||++|+ .+|.|||||... +. .+++. ....|.+.+.+.-|.|+||+.||++++- +..+...
T Consensus 186 dySRCsltSgfPVYvyd~D~---~~----------~G~~~d~~lk~~fq~t~~~n~~~ve~pd~ACiyi~l--vge~q~P 250 (907)
T KOG2264|consen 186 DYSRCSLTSGFPVYVYDSDI---IT----------SGQSEDEWLKQVFQETIPNNVYLVETPDKACIYIHL--VGEIQSP 250 (907)
T ss_pred ccccccccCCceeEEeccce---ee----------cccchHHHHHHHHHHhcccceeEeeCCCccEEEEEE--eccccCC
Confidence 899999 899999999653 22 12222 2335667778888999999999999983 2222211
Q ss_pred CCCCCCChhhHHHHHHHHhhhcCCccccCCCCceEEEeecCCCchhhhhhHHHhhceeeEeeccCcccCCcccCCccccC
Q 017299 110 RRIGTEGIPDFISHYIFNISQKYPYWNRTGGADHFYVACHSIGRSAMEKAWEVKLNAIQVVCSSSYFISGHIAHKDVSLP 189 (374)
Q Consensus 110 ~~~~~~~~~~~l~~~v~~l~~~~PyWnr~~G~dH~~v~~~d~g~~~~~~~~~~~~nai~~~~~~~~~~~~frp~kDv~iP 189 (374)
....+.+ ++++ =++|||. ++|+||++++.+.-+-.........++.||.+ .++++...||||+|.++|
T Consensus 251 ~~l~p~e--------lekl-yslp~w~-~dg~Nhvl~Nl~r~s~~~n~lyn~~t~raivv--Qssf~~~q~RpgfDl~V~ 318 (907)
T KOG2264|consen 251 VVLTPAE--------LEKL-YSLPHWR-TDGFNHVLFNLGRPSDTQNLLYNFQTGRAIVV--QSSFYTVQIRPGFDLPVD 318 (907)
T ss_pred CcCChHh--------hhhh-hcCcccc-CCCcceEEEEccCccccccceeEeccCceEEE--eecceeeeeccCCCcccC
Confidence 1111111 2332 3589998 79999999997542111100012234567765 456788899999999998
Q ss_pred Cc-CCCCCC----CCCCCCCCCceEEEEeccCCc------hHHHHHHHHHhcCC-------Cceec-----cC---c---
Q 017299 190 QI-WPRQED----PPKLGSSKRNKLAFFAGAVNS------PVREKLLQVWRNDS-------EIYAH-----SG---R--- 240 (374)
Q Consensus 190 ~~-~~~~~~----~~~~~~~~R~~l~~F~G~~~~------~~R~~L~~~~~~~~-------~~~~~-----~g---~--- 240 (374)
++ ++..+. ....-+.+|++|+.|+|++.+ ..+.-..++..+.+ ..+.+ +. .
T Consensus 319 pv~h~~~e~~~~e~~p~vP~~RkyL~t~qgki~~~~ssLn~~~aF~~e~~adp~~~a~qds~i~qv~c~~t~k~Qe~~SL 398 (907)
T KOG2264|consen 319 PVNHIAVEKNFVELTPLVPFQRKYLITLQGKIESDNSSLNEFSAFSEELSADPSRRAVQDSPIVQVKCSFTCKNQENCSL 398 (907)
T ss_pred cccccccCccceecCcccchhhheeEEEEeeecccccccchhhhhHHHhccCCcccccccCceEEEEEeeccccCCCCCc
Confidence 65 444432 334557899999999997532 23332222222111 11111 10 1
Q ss_pred -----cc--chHHhhhcCCcEEEe-eCCCCC-----CchhHHHHHhcCceeEEEecccccCCCCCCCCCcEEEEEcCCCh
Q 017299 241 -----LK--TPYADGLLGSKFCLH-VKGFEV-----NTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDI 307 (374)
Q Consensus 241 -----~~--~~y~~~l~~S~FCL~-p~G~~~-----~s~Rl~dAi~~GCIPVii~d~~~lPF~~~iDw~~fsV~v~e~~v 307 (374)
|+ .+-.+++..|+|||+ |+|++- .-.|++||++.||||||+++...|||+|.|||++.++++|..++
T Consensus 399 pewalcg~~~~RrqLlk~STF~lilpp~d~rv~S~~~~~r~~eaL~~GavPviLg~~~~LPyqd~idWrraal~lPkaR~ 478 (907)
T KOG2264|consen 399 PEWALCGERERRRQLLKSSTFCLILPPGDPRVISEMFFQRFLEALQLGAVPVILGNSQLLPYQDLIDWRRAALRLPKARL 478 (907)
T ss_pred chhhhccchHHHHHHhccceeEEEecCCCcchhhHHHHHHHHHHHhcCCeeEEeccccccchHHHHHHHHHhhhCCcccc
Confidence 11 267789999999985 888863 24799999999999999999999999999999999999999999
Q ss_pred hhHHHHHhcCCHHHHHHHHHHHHhhhccceeccCCCCccHHHHHHHHHHHHHhhcccc
Q 017299 308 PLLKKILKGISSEEYLLLQNNVLKVRKHFQWHVFPSDYDAFYMVMYDLWLRRSSVRVQ 365 (374)
Q Consensus 308 ~~l~~~L~~i~~~~i~~mq~~l~~v~~~f~y~~~~~~~DAf~~~~~~l~~rr~~~r~~ 365 (374)
.+++-+|+++.+.++.+|||+ .+|.|+++.++.++...++.+.++.|+.|...
T Consensus 479 tE~HFllrs~~dsDll~mRRq-----GRl~wEtYls~~~~~~~tvlA~lR~rlqIP~r 531 (907)
T KOG2264|consen 479 TEAHFLLRSFEDSDLLEMRRQ-----GRLFWETYLSDRHLLARTVLAALRYRLQIPTR 531 (907)
T ss_pred chHHHHHHhcchhhHHHHHhh-----hhhhHHHHhhHHHHHHHHHHHHHHHhhCCCCc
Confidence 999999999999999999996 58899999999999888888999999988743
No 4
>KOG1022 consensus Acetylglucosaminyltransferase EXT2/exostosin 2 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=99.91 E-value=8.8e-24 Score=208.62 Aligned_cols=300 Identities=17% Similarity=0.153 Sum_probs=214.8
Q ss_pred chhhhc-CCCeEEEeCCCCCCCCccccCCcCC-CCCCCchhHH-HHHHHHhcCCccCCCCCCccEEEEecccccccccCC
Q 017299 35 DYKQMN-RSFRVYVYPHRRNDPFANVLLPVDF-EPRGNYASES-YFKKVFMKSHFVTKDPSKADLFFLPFSIARMRHDRR 111 (374)
Q Consensus 35 ~y~~~~-~~~kIYVY~~~~~~~~~~~~~p~~~-~~~~~y~~E~-~~~~~L~~S~~rT~dP~eAdlF~vP~~~~~~~~~~~ 111 (374)
+|-+|. ...|||+|.+++. +.... ......+.|. .+.++...|.+.|.|+++||+|. | +++.+.. +.
T Consensus 90 ~~y~c~~~~~KvyIy~l~~~-------vd~~s~~~~~T~s~ey~~lleA~~~S~yyt~n~N~aclf~-P-s~d~lnQ-n~ 159 (691)
T KOG1022|consen 90 LYYQCLFFETKVYIYMLGDI-------VDAKSIDKGATWSPEYIALLEAWHLSFYYTFNYNGACLFM-P-SSDELNQ-NP 159 (691)
T ss_pred hhhhccccccceeEEehhhh-------hhhhcccccccccHHHHHHHHHHHhccceecCCCceEEEe-c-chhhhcc-Cc
Confidence 456777 5799999999842 11110 1123334454 35588889999999999999998 4 4444433 22
Q ss_pred CCCCChhhHHHHHHHHhhhcCCccccCCCCceEEEeecCCCchhhhhhHHH-hhceeeEeeccCcccCCcccCCccccCC
Q 017299 112 IGTEGIPDFISHYIFNISQKYPYWNRTGGADHFYVACHSIGRSAMEKAWEV-KLNAIQVVCSSSYFISGHIAHKDVSLPQ 190 (374)
Q Consensus 112 ~~~~~~~~~l~~~v~~l~~~~PyWnr~~G~dH~~v~~~d~g~~~~~~~~~~-~~nai~~~~~~~~~~~~frp~kDv~iP~ 190 (374)
++. .+. +.+.+++-.|+| |.||..++.-+.|........+. .-+|+. .++++..+.||++.||.||.
T Consensus 160 l~~-----kl~---~~ala~l~~wdr--g~nH~~fnmLpGg~p~yntaldv~~d~a~~--~gggf~tW~yr~g~dv~ipv 227 (691)
T KOG1022|consen 160 LSW-----KLE---KVALAKLLVWDR--GVNHEGFNMLPGGDPTYNTALDVGQDEAWY--SGGGFGTWKYRKGNDVYIPV 227 (691)
T ss_pred chH-----HHH---HHHHhcccchhc--ccceeeEeeccCCCCCccccccCCcceeEE--ecCCcCcccccCCCcccccc
Confidence 221 111 123456679998 99999999877765432221122 234433 35667889999999999999
Q ss_pred cCCCCCCCCCCCCCCCceEEEEec-cCCchHHHHHHHHHhcCCCceeccCc-----------cc----chHHhhhcCCcE
Q 017299 191 IWPRQEDPPKLGSSKRNKLAFFAG-AVNSPVREKLLQVWRNDSEIYAHSGR-----------LK----TPYADGLLGSKF 254 (374)
Q Consensus 191 ~~~~~~~~~~~~~~~R~~l~~F~G-~~~~~~R~~L~~~~~~~~~~~~~~g~-----------~~----~~y~~~l~~S~F 254 (374)
..|.....+...+..|..++--.| +++..+|..|.++........+..+. +. .+|...+...+|
T Consensus 228 ~Sp~~v~~~~~~~g~r~~~l~~~q~n~~pr~r~~l~el~~kh~e~~l~l~~c~nlsl~~r~~~qhH~~~~yp~~l~~~~f 307 (691)
T KOG1022|consen 228 RSPGNVGRAFLYDGSRYRVLQDCQENYGPRIRVSLIELLSKHEERELELPFCLNLSLNSRGVRQHHFDVKYPSSLEFIGF 307 (691)
T ss_pred ccccccCccccCCccceeeeeccccccchHhHHhHHHHHhhccceEEecchhccccccccchhhcccccccccccceeee
Confidence 888765555555667776665555 36778898888877655544443222 21 289999999999
Q ss_pred EEeeCCCCCCchhHHHHHhcCceeEEEecccccCCCCCCCCCcEEEEEcCCChhhHHHHHhcCCHHHHHHHHHHHHhhhc
Q 017299 255 CLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKGISSEEYLLLQNNVLKVRK 334 (374)
Q Consensus 255 CL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~iDw~~fsV~v~e~~v~~l~~~L~~i~~~~i~~mq~~l~~v~~ 334 (374)
|+.-+|.+.+.+-+.+-+.+||||||..|.+.+||++++||...||+++|..+.++.+.|++|+...+-+||.+..
T Consensus 308 c~~~R~~r~gq~~lv~~~~a~c~pvi~vd~y~lpf~~Vvdw~~aSv~~~e~~~~~v~~~l~~i~~~~i~sl~~r~~---- 383 (691)
T KOG1022|consen 308 CDGDRVTRGGQFHLVILGYASCAPVISVDIYLLPFLGVVDWIVASVWCMEYYAGKVMDALLNIETAGICSLQLRRI---- 383 (691)
T ss_pred EeccccccCCccceehhhhcccceeeeeehhhhhhhhhhhceeeeEEeehhhHHHHHHHhhcchhcchhhhhhhhh----
Confidence 9999999888999999999999999999999999999999999999999999999999999999999999998643
Q ss_pred cceeccCCCCccHHHHHHHHHHHHHhh
Q 017299 335 HFQWHVFPSDYDAFYMVMYDLWLRRSS 361 (374)
Q Consensus 335 ~f~y~~~~~~~DAf~~~~~~l~~rr~~ 361 (374)
-.+...+.+.-+...++.+.+..|+-
T Consensus 384 -~~rl~rf~~~~~~~l~~~~~i~~~ll 409 (691)
T KOG1022|consen 384 -GSRLNRFPPFKRGFLLLLSSIGKRLL 409 (691)
T ss_pred -hhhHhhcchHHHHHHHHHHHHhhhhh
Confidence 23444565555555566666665543
No 5
>PF00852 Glyco_transf_10: Glycosyltransferase family 10 (fucosyltransferase); InterPro: IPR001503 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 10 GT10 from CAZY comprises enzymes with two known activities; galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) and galactoside 3-fucosyltransferase (2.4.1.152 from EC). The galactoside 3-fucosyltransferases display similarities with the alpha-2 and alpha-6-fucosyltranferases []. The biosynthesis of the carbohydrate antigen sialyl Lewis X (sLe(x)) is dependent on the activity of an galactoside 3-fucosyltransferase. This enzyme catalyses the transfer of fucose from GDP-beta-fucose to the 3-OH of N-acetylglucosamine present in lactosamine acceptors []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) belongs to the Lewis blood group system and is associated with Le(a/b) antigen. ; GO: 0008417 fucosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 2NZX_B 2NZW_C 2NZY_C.
Probab=97.30 E-value=0.00079 Score=66.78 Aligned_cols=140 Identities=20% Similarity=0.188 Sum_probs=70.4
Q ss_pred CCcccCCccccCCcCCCCCC--C---C-CCCCCCCceEE-EEeccCC-chHHHHHHHHHhcCCCceeccCccc-------
Q 017299 178 SGHIAHKDVSLPQIWPRQED--P---P-KLGSSKRNKLA-FFAGAVN-SPVREKLLQVWRNDSEIYAHSGRLK------- 242 (374)
Q Consensus 178 ~~frp~kDv~iP~~~~~~~~--~---~-~~~~~~R~~l~-~F~G~~~-~~~R~~L~~~~~~~~~~~~~~g~~~------- 242 (374)
-+||.+.||.+|+....... . . ......++.++ +++...+ ..-|..+++.+.+.- .+-..|.|.
T Consensus 140 MTYr~dSDi~~py~~~~~~~~~~~~~~~~~~~~~K~~~~~w~~Snc~~~~~R~~~~~~L~~~~-~vd~yG~c~~~~~~~~ 218 (349)
T PF00852_consen 140 MTYRRDSDIPLPYGYFSPRESPSEKDDLPNILKKKTKLAAWIVSNCNPHSGREEYVRELSKYI-PVDSYGKCGNNNPCPR 218 (349)
T ss_dssp ---------------------------------TSSEEEEE--S-S--H-HHHHHHHHHHTTS--EEE-SSTT--SSS--
T ss_pred cccccccccccccccccccccccccccccccccCCCceEEEEeeCcCCcccHHHHHHHHHhhc-CeEccCCCCCCCCccc
Confidence 46888999999975432211 1 0 11233444454 4554443 224888888887763 234456661
Q ss_pred chHHhhhcCCcEEEeeCC---CCCCchhHHHHHhcCceeEEEe--c-cc--ccCCCCCCCCCcEEEEEcCCChhhHHHHH
Q 017299 243 TPYADGLLGSKFCLHVKG---FEVNTARIADSLYYGCVPVIIA--N-HY--DLPFADILNWKSFSIVVATLDIPLLKKIL 314 (374)
Q Consensus 243 ~~y~~~l~~S~FCL~p~G---~~~~s~Rl~dAi~~GCIPVii~--d-~~--~lPF~~~iDw~~fsV~v~e~~v~~l~~~L 314 (374)
....+.+++-+|.|+... .+.-+--|++|+.+|||||+++ . ++ .+|=...|+.++| +.+.+|.+.|
T Consensus 219 ~~~~~~~~~ykF~lafENs~c~dYiTEK~~~al~~g~VPI~~G~~~~~~~~~~P~~SfI~~~df------~s~~~La~yl 292 (349)
T PF00852_consen 219 DCKLELLSKYKFYLAFENSNCPDYITEKFWNALLAGTVPIYWGPPRPNYEEFAPPNSFIHVDDF------KSPKELADYL 292 (349)
T ss_dssp S-HHHHHHTEEEEEEE-SS--TT---HHHHHHHHTTSEEEEES---TTHHHHS-GGGSEEGGGS------SSHHHHHHHH
T ss_pred ccccccccCcEEEEEecCCCCCCCCCHHHHHHHHCCeEEEEECCEecccccCCCCCCccchhcC------CCHHHHHHHH
Confidence 267889999999998653 3345889999999999999999 4 23 3666788888887 3567788888
Q ss_pred hcC--CHHHHHH
Q 017299 315 KGI--SSEEYLL 324 (374)
Q Consensus 315 ~~i--~~~~i~~ 324 (374)
+.+ +++.+.+
T Consensus 293 ~~l~~n~~~Y~~ 304 (349)
T PF00852_consen 293 KYLDKNDELYNK 304 (349)
T ss_dssp HHHHT-HHHHH-
T ss_pred HHHhcCHHHHhh
Confidence 777 3555543
No 6
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=97.29 E-value=0.0022 Score=60.57 Aligned_cols=94 Identities=13% Similarity=0.155 Sum_probs=70.8
Q ss_pred chHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEecccccCCCCCCCCCcEEEEEcCCChhhHHHHHhcC--CHH
Q 017299 243 TPYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKGI--SSE 320 (374)
Q Consensus 243 ~~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~iDw~~fsV~v~e~~v~~l~~~L~~i--~~~ 320 (374)
.+..+.|..|.+.++|.-....+..++||+.+|| |||.++. -.+.+.+.-....+.++..+..++.+.|..+ .++
T Consensus 267 ~~~~~~~~~~di~i~~~~~~~~~~~~~Ea~~~g~-pvI~~~~--~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~ 343 (374)
T cd03801 267 EDLPALYAAADVFVLPSLYEGFGLVLLEAMAAGL-PVVASDV--GGIPEVVEDGETGLLVPPGDPEALAEAILRLLDDPE 343 (374)
T ss_pred hhHHHHHHhcCEEEecchhccccchHHHHHHcCC-cEEEeCC--CChhHHhcCCcceEEeCCCCHHHHHHHHHHHHcChH
Confidence 4788899999999999866666788999999997 6777775 3455566657778888888888777777664 466
Q ss_pred HHHHHHHHHH-hhhccceec
Q 017299 321 EYLLLQNNVL-KVRKHFQWH 339 (374)
Q Consensus 321 ~i~~mq~~l~-~v~~~f~y~ 339 (374)
...+|.++.+ .+.+.+.|+
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~ 363 (374)
T cd03801 344 LRRRLGEAARERVAERFSWD 363 (374)
T ss_pred HHHHHHHHHHHHHHHhcCHH
Confidence 7778888776 456665443
No 7
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=97.04 E-value=0.0041 Score=63.71 Aligned_cols=100 Identities=12% Similarity=0.117 Sum_probs=74.9
Q ss_pred chHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEecccccCCCCCCCC---CcEEEEEcCCChhhHHHHHhcC--
Q 017299 243 TPYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNW---KSFSIVVATLDIPLLKKILKGI-- 317 (374)
Q Consensus 243 ~~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~iDw---~~fsV~v~e~~v~~l~~~L~~i-- 317 (374)
.+..+.|+.+..++.|......+.-++|||.+| +|||.++.- ...++++= .+..+.++..+..++-+.|..+
T Consensus 323 ~ev~~~~~~aDv~V~pS~~E~~g~~vlEAmA~G-~PVI~s~~g--g~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 399 (465)
T PLN02871 323 DELSQAYASGDVFVMPSESETLGFVVLEAMASG-VPVVAARAG--GIPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLA 399 (465)
T ss_pred HHHHHHHHHCCEEEECCcccccCcHHHHHHHcC-CCEEEcCCC--CcHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 368889999999999987776778899999999 899988743 23344432 6778888888888777666554
Q ss_pred CHHHHHHHHHHHHhhhccceeccCCCCc
Q 017299 318 SSEEYLLLQNNVLKVRKHFQWHVFPSDY 345 (374)
Q Consensus 318 ~~~~i~~mq~~l~~v~~~f~y~~~~~~~ 345 (374)
+++...+|.++.++....|.|.......
T Consensus 400 ~~~~~~~~~~~a~~~~~~fsw~~~a~~l 427 (465)
T PLN02871 400 DPELRERMGAAAREEVEKWDWRAATRKL 427 (465)
T ss_pred CHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 5777788888887766777776654443
No 8
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=97.02 E-value=0.0065 Score=57.16 Aligned_cols=96 Identities=15% Similarity=0.137 Sum_probs=69.6
Q ss_pred chHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEecccccCCCCCCCCCcEEEEEcCCChhhHHHHHhcC--CHH
Q 017299 243 TPYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKGI--SSE 320 (374)
Q Consensus 243 ~~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~iDw~~fsV~v~e~~v~~l~~~L~~i--~~~ 320 (374)
.+..+.|++|.+++.|.........++|||.+||. ||.++....+ +++++-....+.++..++.++.+.+..+ +++
T Consensus 244 ~~~~~~~~~ad~~i~ps~~e~~~~~~~Ea~a~G~P-vi~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~i~~ll~~~~ 321 (348)
T cd03820 244 KNIEEYYAKASIFVLTSRFEGFPMVLLEAMAFGLP-VISFDCPTGP-SEIIEDGVNGLLVPNGDVEALAEALLRLMEDEE 321 (348)
T ss_pred chHHHHHHhCCEEEeCccccccCHHHHHHHHcCCC-EEEecCCCch-HhhhccCcceEEeCCCCHHHHHHHHHHHHcCHH
Confidence 46778999999999998766667889999999986 4555532222 2334444577788888887777776665 578
Q ss_pred HHHHHHHHHHhhhccceecc
Q 017299 321 EYLLLQNNVLKVRKHFQWHV 340 (374)
Q Consensus 321 ~i~~mq~~l~~v~~~f~y~~ 340 (374)
...+|.++.+...+.|.|+.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~ 341 (348)
T cd03820 322 LRKRMGANARESAERFSIEN 341 (348)
T ss_pred HHHHHHHHHHHHHHHhCHHH
Confidence 88888888877777776653
No 9
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=96.99 E-value=0.0019 Score=56.25 Aligned_cols=84 Identities=18% Similarity=0.151 Sum_probs=56.3
Q ss_pred chHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEecccccCCCCCCCCCcEEEEEcCCChhhHHHHHhcCC--HH
Q 017299 243 TPYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKGIS--SE 320 (374)
Q Consensus 243 ~~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~iDw~~fsV~v~e~~v~~l~~~L~~i~--~~ 320 (374)
.+..+.++.|.+.++|......+..+.|||.+|| |||+++. -.+.+++.=..-.+.++..++.++.+.+..+- ++
T Consensus 84 ~~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~-pvI~~~~--~~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~~~ 160 (172)
T PF00534_consen 84 DELDELYKSSDIFVSPSRNEGFGLSLLEAMACGC-PVIASDI--GGNNEIINDGVNGFLFDPNDIEELADAIEKLLNDPE 160 (172)
T ss_dssp HHHHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT--EEEEESS--THHHHHSGTTTSEEEESTTSHHHHHHHHHHHHHHHH
T ss_pred cccccccccceecccccccccccccccccccccc-ceeeccc--cCCceeeccccceEEeCCCCHHHHHHHHHHHHCCHH
Confidence 4778899999999999988888899999999999 6667772 22223332222456777778888777777663 34
Q ss_pred HHHHHHHHH
Q 017299 321 EYLLLQNNV 329 (374)
Q Consensus 321 ~i~~mq~~l 329 (374)
....|.++.
T Consensus 161 ~~~~l~~~~ 169 (172)
T PF00534_consen 161 LRQKLGKNA 169 (172)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 455555544
No 10
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=96.97 E-value=0.0051 Score=59.00 Aligned_cols=93 Identities=13% Similarity=0.185 Sum_probs=68.5
Q ss_pred hHHhhhcCCcEEEeeCCCC--CCchhHHHHHhcCceeEEEecccccCCCCCCCCCcEEEEEcCCChhhHHHHHhcC--CH
Q 017299 244 PYADGLLGSKFCLHVKGFE--VNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKGI--SS 319 (374)
Q Consensus 244 ~y~~~l~~S~FCL~p~G~~--~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~iDw~~fsV~v~e~~v~~l~~~L~~i--~~ 319 (374)
+..+.|+.|.+++.|.... ..+..+.|||.+|| |||.+|.-. .+.+.+ ....+.++..+..++.+.|..+ .+
T Consensus 260 ~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~-PvI~~~~~~--~~~i~~-~~~g~~~~~~d~~~~~~~l~~l~~~~ 335 (366)
T cd03822 260 ELPELFSAADVVVLPYRSADQTQSGVLAYAIGFGK-PVISTPVGH--AEEVLD-GGTGLLVPPGDPAALAEAIRRLLADP 335 (366)
T ss_pred HHHHHHhhcCEEEecccccccccchHHHHHHHcCC-CEEecCCCC--hheeee-CCCcEEEcCCCHHHHHHHHHHHHcCh
Confidence 6778999999999998777 67788999999999 999887432 333334 3446677777777777766554 35
Q ss_pred HHHHHHHHHHHhhhccceecc
Q 017299 320 EEYLLLQNNVLKVRKHFQWHV 340 (374)
Q Consensus 320 ~~i~~mq~~l~~v~~~f~y~~ 340 (374)
+...+|+++.++..+.|.|+.
T Consensus 336 ~~~~~~~~~~~~~~~~~s~~~ 356 (366)
T cd03822 336 ELAQALRARAREYARAMSWER 356 (366)
T ss_pred HHHHHHHHHHHHHHhhCCHHH
Confidence 778888888877666665554
No 11
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=96.85 E-value=0.0077 Score=57.40 Aligned_cols=92 Identities=17% Similarity=0.280 Sum_probs=60.9
Q ss_pred hHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEecccccCCCCCCCCCcEEEEEcCCChhhHHHHHhcC--CHHH
Q 017299 244 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKGI--SSEE 321 (374)
Q Consensus 244 ~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~iDw~~fsV~v~e~~v~~l~~~L~~i--~~~~ 321 (374)
+..+.+..|.++++|.-....+..++|||.+|| |||.++.- ...+.+.= ...+.++.++ .++.+.+..+ .+++
T Consensus 274 ~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~-PvI~~~~~--~~~~~~~~-~~~~~~~~~~-~~~~~~i~~l~~~~~~ 348 (375)
T cd03821 274 DKAAALADADLFVLPSHSENFGIVVAEALACGT-PVVTTDKV--PWQELIEY-GCGWVVDDDV-DALAAALRRALELPQR 348 (375)
T ss_pred HHHHHHhhCCEEEeccccCCCCcHHHHHHhcCC-CEEEcCCC--CHHHHhhc-CceEEeCCCh-HHHHHHHHHHHhCHHH
Confidence 667789999999999876666788999999997 88887742 22333322 4445555443 5544444443 3467
Q ss_pred HHHHHHHHHhh-hccceecc
Q 017299 322 YLLLQNNVLKV-RKHFQWHV 340 (374)
Q Consensus 322 i~~mq~~l~~v-~~~f~y~~ 340 (374)
..+|.++.++. .++|.|+.
T Consensus 349 ~~~~~~~~~~~~~~~~s~~~ 368 (375)
T cd03821 349 LKAMGENGRALVEERFSWTA 368 (375)
T ss_pred HHHHHHHHHHHHHHhcCHHH
Confidence 78888877765 77776653
No 12
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=96.83 E-value=0.014 Score=56.69 Aligned_cols=102 Identities=13% Similarity=0.132 Sum_probs=68.3
Q ss_pred eccCccc-chHHhhhcCCcEEEeeCCC------CCCchhHHHHHhcCceeEEEecccccCCCCCCCCCcEEEEEcCCChh
Q 017299 236 AHSGRLK-TPYADGLLGSKFCLHVKGF------EVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIP 308 (374)
Q Consensus 236 ~~~g~~~-~~y~~~l~~S~FCL~p~G~------~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~iDw~~fsV~v~e~~v~ 308 (374)
...|..+ .+..+.++.|..++.|.-. ......++|||.+|| |||.+|.-. ..+.+.=....+.++..+..
T Consensus 248 ~~~g~~~~~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~-PvI~s~~~~--~~e~i~~~~~g~~~~~~d~~ 324 (367)
T cd05844 248 TFLGAQPHAEVRELMRRARIFLQPSVTAPSGDAEGLPVVLLEAQASGV-PVVATRHGG--IPEAVEDGETGLLVPEGDVA 324 (367)
T ss_pred EECCCCCHHHHHHHHHhCCEEEECcccCCCCCccCCchHHHHHHHcCC-CEEEeCCCC--chhheecCCeeEEECCCCHH
Confidence 3344432 3567888899988877432 224578999999996 999888633 33444445677888888888
Q ss_pred hHHHHHhcC--CHHHHHHHHHHHHh-hhccceecc
Q 017299 309 LLKKILKGI--SSEEYLLLQNNVLK-VRKHFQWHV 340 (374)
Q Consensus 309 ~l~~~L~~i--~~~~i~~mq~~l~~-v~~~f~y~~ 340 (374)
++.+.|..+ +++...+|.++.++ +.++|.|..
T Consensus 325 ~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~ 359 (367)
T cd05844 325 ALAAALGRLLADPDLRARMGAAGRRRVEERFDLRR 359 (367)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHCCHHH
Confidence 777666554 46667778776654 556776654
No 13
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=96.80 E-value=0.011 Score=59.06 Aligned_cols=117 Identities=14% Similarity=0.127 Sum_probs=77.7
Q ss_pred HHHHHHHHHhc--CCCceeccCccc-chHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEecccccCCCCCCCCC
Q 017299 220 VREKLLQVWRN--DSEIYAHSGRLK-TPYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWK 296 (374)
Q Consensus 220 ~R~~L~~~~~~--~~~~~~~~g~~~-~~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~iDw~ 296 (374)
.++.+.+.... ..+.+...|..+ .++.+.|+.|..++.|.-....+.-++|||++|| |||.+|. -+..+++.=.
T Consensus 266 ~~~~~~~~~~~~~~~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~-PVIas~~--~g~~e~i~~~ 342 (396)
T cd03818 266 WKQHMLDELGGRLDLSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGC-LVVGSDT--APVREVITDG 342 (396)
T ss_pred HHHHHHHHhhcccCcceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCC-CEEEcCC--CCchhhcccC
Confidence 35555555442 223445556654 3778889999988887655445567999999999 7888874 2556666656
Q ss_pred cEEEEEcCCChhhHHHHHhcC--CHHHHHHHHHHHHh-hhccceec
Q 017299 297 SFSIVVATLDIPLLKKILKGI--SSEEYLLLQNNVLK-VRKHFQWH 339 (374)
Q Consensus 297 ~fsV~v~e~~v~~l~~~L~~i--~~~~i~~mq~~l~~-v~~~f~y~ 339 (374)
.-.+.++..+..++-+.+..+ .++...+|.++.++ +.++|.|+
T Consensus 343 ~~G~lv~~~d~~~la~~i~~ll~~~~~~~~l~~~ar~~~~~~fs~~ 388 (396)
T cd03818 343 ENGLLVDFFDPDALAAAVIELLDDPARRARLRRAARRTALRYDLLS 388 (396)
T ss_pred CceEEcCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhccHH
Confidence 667788888887766655543 45677778777664 44556554
No 14
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=96.77 E-value=0.0034 Score=60.10 Aligned_cols=93 Identities=14% Similarity=0.132 Sum_probs=68.4
Q ss_pred hHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEecccccCCCCCCCCCcEEEEEcCCChhhHHHHHhcC--CHHH
Q 017299 244 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKGI--SSEE 321 (374)
Q Consensus 244 ~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~iDw~~fsV~v~e~~v~~l~~~L~~i--~~~~ 321 (374)
+..+.|+.|..|+.|.+....+..++|||.+|| |||.++.-. ..+++.=....+.++..+..++.+.+..+ .++.
T Consensus 259 ~~~~~~~~~d~~l~~s~~e~~~~~~lEa~a~g~-PvI~~~~~~--~~~~i~~~~~g~~~~~~~~~~l~~~i~~l~~~~~~ 335 (364)
T cd03814 259 ELAAAYASADVFVFPSRTETFGLVVLEAMASGL-PVVAPDAGG--PADIVTDGENGLLVEPGDAEAFAAALAALLADPEL 335 (364)
T ss_pred HHHHHHHhCCEEEECcccccCCcHHHHHHHcCC-CEEEcCCCC--chhhhcCCcceEEcCCCCHHHHHHHHHHHHcCHHH
Confidence 677889999999999887777788999999999 788887432 33444434567777888876666665554 5788
Q ss_pred HHHHHHHHHhhhccceec
Q 017299 322 YLLLQNNVLKVRKHFQWH 339 (374)
Q Consensus 322 i~~mq~~l~~v~~~f~y~ 339 (374)
..+|.++..+....+.|+
T Consensus 336 ~~~~~~~~~~~~~~~~~~ 353 (364)
T cd03814 336 RRRMAARARAEAERRSWE 353 (364)
T ss_pred HHHHHHHHHHHHhhcCHH
Confidence 888888877665555444
No 15
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=96.67 E-value=0.018 Score=55.44 Aligned_cols=95 Identities=14% Similarity=0.093 Sum_probs=68.3
Q ss_pred cchHHhhhcCCcEEEeeC-CCCCCchhHHHHHhcCceeEEEecccccCCCCCCCCCcEEEEEcCCChhhHHHHHh-cC--
Q 017299 242 KTPYADGLLGSKFCLHVK-GFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILK-GI-- 317 (374)
Q Consensus 242 ~~~y~~~l~~S~FCL~p~-G~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~iDw~~fsV~v~e~~v~~l~~~L~-~i-- 317 (374)
..+..+.|+.|..++.|. -......-++|||.+|| |||++|. -+..+.+.-....+.++..+..++.+.|. .+
T Consensus 254 ~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~-PvI~~~~--~~~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~~~ 330 (355)
T cd03819 254 CSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGR-PVIASDH--GGARETVRPGETGLLVPPGDAEALAQALDQILSL 330 (355)
T ss_pred cccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCC-CEEEcCC--CCcHHHHhCCCceEEeCCCCHHHHHHHHHHHHhh
Confidence 347788999999999886 33345578999999999 7888773 34466666565677788888888777763 32
Q ss_pred CHHHHHHHHHHHHh-hhccceec
Q 017299 318 SSEEYLLLQNNVLK-VRKHFQWH 339 (374)
Q Consensus 318 ~~~~i~~mq~~l~~-v~~~f~y~ 339 (374)
++++..+|.++.++ +..+|.|+
T Consensus 331 ~~~~~~~~~~~a~~~~~~~f~~~ 353 (355)
T cd03819 331 LPEGRAKMFAKARMCVETLFSYD 353 (355)
T ss_pred CHHHHHHHHHHHHHHHHHhhhhc
Confidence 67788888887665 44555443
No 16
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=96.67 E-value=0.013 Score=56.01 Aligned_cols=95 Identities=15% Similarity=0.115 Sum_probs=66.0
Q ss_pred chHHhhhcCCcEEEeeCCCCCC-----chhHHHHHhcCceeEEEecccccCCCCCCCCCcEEEEEcCCChhhHHHHHhcC
Q 017299 243 TPYADGLLGSKFCLHVKGFEVN-----TARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKGI 317 (374)
Q Consensus 243 ~~y~~~l~~S~FCL~p~G~~~~-----s~Rl~dAi~~GCIPVii~d~~~lPF~~~iDw~~fsV~v~e~~v~~l~~~L~~i 317 (374)
.+..+.|+.+.++++|...+.. ...++||+.+|| |||.++.-.. .+.+.=....+.++..+..++.+.|..+
T Consensus 286 ~~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~-pvi~~~~~~~--~~~~~~~~~g~~~~~~~~~~l~~~i~~~ 362 (394)
T cd03794 286 EELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAAGK-PVLASVDGES--AELVEEAGAGLVVPPGDPEALAAAILEL 362 (394)
T ss_pred HHHHHHHHhhCeeEEeccCcccccccCchHHHHHHHCCC-cEEEecCCCc--hhhhccCCcceEeCCCCHHHHHHHHHHH
Confidence 3677889999999999776533 456899999997 8888875322 2222222566778888888777777666
Q ss_pred --CHHHHHHHHHHHHhhh-ccceecc
Q 017299 318 --SSEEYLLLQNNVLKVR-KHFQWHV 340 (374)
Q Consensus 318 --~~~~i~~mq~~l~~v~-~~f~y~~ 340 (374)
++++..+|.++.++.. ++|.|+.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~s~~~ 388 (394)
T cd03794 363 LDDPEERAEMGENGRRYVEEKFSREK 388 (394)
T ss_pred HhChHHHHHHHHHHHHHHHHhhcHHH
Confidence 6788888887766543 3665543
No 17
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=96.57 E-value=0.019 Score=54.16 Aligned_cols=92 Identities=13% Similarity=0.058 Sum_probs=64.0
Q ss_pred hHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEecccccCCCCCCCCCcEEEEEcCCChhhHHHHHhcC--CHHH
Q 017299 244 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKGI--SSEE 321 (374)
Q Consensus 244 ~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~iDw~~fsV~v~e~~v~~l~~~L~~i--~~~~ 321 (374)
+..+.++.|..|+.|......+..++||+.+|| |||.+|.-. ..+.+.=....+.++.++..++.+.+..+ .++.
T Consensus 256 ~~~~~~~~adi~i~ps~~e~~~~~~~Ea~~~G~-Pvi~s~~~~--~~~~i~~~~~g~~~~~~~~~~~~~~i~~l~~~~~~ 332 (359)
T cd03808 256 DVPELLAAADVFVLPSYREGLPRVLLEAMAMGR-PVIATDVPG--CREAVIDGVNGFLVPPGDAEALADAIERLIEDPEL 332 (359)
T ss_pred cHHHHHHhccEEEecCcccCcchHHHHHHHcCC-CEEEecCCC--chhhhhcCcceEEECCCCHHHHHHHHHHHHhCHHH
Confidence 566789999999999876666788999999996 788777432 23334324556778888887766666554 4677
Q ss_pred HHHHHHHHHhh-hcccee
Q 017299 322 YLLLQNNVLKV-RKHFQW 338 (374)
Q Consensus 322 i~~mq~~l~~v-~~~f~y 338 (374)
..+|.++.++. ..+|.|
T Consensus 333 ~~~~~~~~~~~~~~~~s~ 350 (359)
T cd03808 333 RARMGQAARKRAEEEFDE 350 (359)
T ss_pred HHHHHHHHHHHHHHhcCH
Confidence 77777766544 555543
No 18
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=96.57 E-value=0.0099 Score=56.98 Aligned_cols=92 Identities=17% Similarity=0.229 Sum_probs=67.2
Q ss_pred hHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEecccccCCCCCCCCCcEEEEEcCCChhhHHHHHhc-C-CHHH
Q 017299 244 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKG-I-SSEE 321 (374)
Q Consensus 244 ~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~iDw~~fsV~v~e~~v~~l~~~L~~-i-~~~~ 321 (374)
+..+.++.+.+++.|.-....+..++||+.+|| |||.++.- ...+.+ .+..+.++..+..++.+.|.. + +++.
T Consensus 265 ~~~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~G~-pvI~~~~~--~~~e~~--~~~~~~~~~~~~~~~~~~i~~l~~~~~~ 339 (365)
T cd03809 265 ELAALYRGARAFVFPSLYEGFGLPVLEAMACGT-PVIASNIS--SLPEVA--GDAALYFDPLDPEALAAAIERLLEDPAL 339 (365)
T ss_pred HHHHHHhhhhhhcccchhccCCCCHHHHhcCCC-cEEecCCC--Ccccee--cCceeeeCCCCHHHHHHHHHHHhcCHHH
Confidence 677889999999988655445677999999997 77777642 233344 345677888888887777766 3 5777
Q ss_pred HHHHHHHHHhhhccceecc
Q 017299 322 YLLLQNNVLKVRKHFQWHV 340 (374)
Q Consensus 322 i~~mq~~l~~v~~~f~y~~ 340 (374)
..+|.++.+.+.+.|.|+.
T Consensus 340 ~~~~~~~~~~~~~~~sw~~ 358 (365)
T cd03809 340 REELRERGLARAKRFSWEK 358 (365)
T ss_pred HHHHHHHHHHHHHhCCHHH
Confidence 7888888777777776654
No 19
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=96.55 E-value=0.017 Score=56.75 Aligned_cols=95 Identities=12% Similarity=0.034 Sum_probs=66.9
Q ss_pred chHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEecccccCCCCCCCCCcEEEEEcCCChhhHHHHHhcC--CHH
Q 017299 243 TPYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKGI--SSE 320 (374)
Q Consensus 243 ~~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~iDw~~fsV~v~e~~v~~l~~~L~~i--~~~ 320 (374)
.+..+.|+.|..+++|.-......-++|||.+|| |||.+|.- ...+++.-......++..+..++.+.|..+ .++
T Consensus 264 ~~~~~~~~~adi~v~pS~~Eg~~~~~lEAma~G~-Pvv~s~~~--g~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~~~ 340 (374)
T TIGR03088 264 DDVPALMQALDLFVLPSLAEGISNTILEAMASGL-PVIATAVG--GNPELVQHGVTGALVPPGDAVALARALQPYVSDPA 340 (374)
T ss_pred CCHHHHHHhcCEEEeccccccCchHHHHHHHcCC-CEEEcCCC--CcHHHhcCCCceEEeCCCCHHHHHHHHHHHHhCHH
Confidence 4677889999988888655556778999999996 99998842 234555555667788888887766666554 455
Q ss_pred HHHHHHHHHHh-hhccceecc
Q 017299 321 EYLLLQNNVLK-VRKHFQWHV 340 (374)
Q Consensus 321 ~i~~mq~~l~~-v~~~f~y~~ 340 (374)
...+|.++.++ +.+.|.|..
T Consensus 341 ~~~~~~~~a~~~~~~~fs~~~ 361 (374)
T TIGR03088 341 ARRAHGAAGRARAEQQFSINA 361 (374)
T ss_pred HHHHHHHHHHHHHHHhCCHHH
Confidence 66667666554 456665544
No 20
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=96.54 E-value=0.022 Score=56.64 Aligned_cols=105 Identities=10% Similarity=0.006 Sum_probs=70.8
Q ss_pred eeccCccc-chHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEecccccCCCCCCCCCcEEEEEcCCChhhHHHH
Q 017299 235 YAHSGRLK-TPYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKI 313 (374)
Q Consensus 235 ~~~~g~~~-~~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~iDw~~fsV~v~e~~v~~l~~~ 313 (374)
+...|..+ .+..+.|+.|..|+.|.=......-++|||.+|| |||.++.- ...++|.=....+.++..+..++.+.
T Consensus 285 v~~~g~~~~~~~~~~l~~ad~~v~ps~~E~~g~~~lEAma~G~-Pvi~~~~~--~~~e~i~~~~~g~~~~~~d~~~la~~ 361 (405)
T TIGR03449 285 VRFLPPRPPEELVHVYRAADVVAVPSYNESFGLVAMEAQACGT-PVVAARVG--GLPVAVADGETGLLVDGHDPADWADA 361 (405)
T ss_pred EEECCCCCHHHHHHHHHhCCEEEECCCCCCcChHHHHHHHcCC-CEEEecCC--CcHhhhccCCceEECCCCCHHHHHHH
Confidence 33344432 3677889999988888644445678999999996 88888742 22344443455677888888776655
Q ss_pred HhcC--CHHHHHHHHHHHHhhhccceeccCC
Q 017299 314 LKGI--SSEEYLLLQNNVLKVRKHFQWHVFP 342 (374)
Q Consensus 314 L~~i--~~~~i~~mq~~l~~v~~~f~y~~~~ 342 (374)
+..+ +++...+|.++.++..+.|.|+...
T Consensus 362 i~~~l~~~~~~~~~~~~~~~~~~~fsw~~~~ 392 (405)
T TIGR03449 362 LARLLDDPRTRIRMGAAAVEHAAGFSWAATA 392 (405)
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 5443 4667788888877766777666543
No 21
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=96.18 E-value=0.05 Score=52.93 Aligned_cols=93 Identities=13% Similarity=0.131 Sum_probs=68.0
Q ss_pred hHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEecccccCCCCCCCCCcEEEEEcCCChhhHHHHHhcC--CHHH
Q 017299 244 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKGI--SSEE 321 (374)
Q Consensus 244 ~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~iDw~~fsV~v~e~~v~~l~~~L~~i--~~~~ 321 (374)
+..+.|+.|..++.|.-....+..++|||.+| +|||.++.- ...+++.-..-...++..+..++.+.+..+ .++.
T Consensus 263 ~~~~~~~~~d~~v~ps~~E~~~~~~~EAma~g-~PvI~s~~~--~~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~~~~~ 339 (371)
T cd04962 263 HVEELLSIADLFLLPSEKESFGLAALEAMACG-VPVVASNAG--GIPEVVKHGETGFLVDVGDVEAMAEYALSLLEDDEL 339 (371)
T ss_pred cHHHHHHhcCEEEeCCCcCCCccHHHHHHHcC-CCEEEeCCC--CchhhhcCCCceEEcCCCCHHHHHHHHHHHHhCHHH
Confidence 67788999999999975555667899999999 788888753 234555544556677888887766665544 5778
Q ss_pred HHHHHHHHHhh-hccceec
Q 017299 322 YLLLQNNVLKV-RKHFQWH 339 (374)
Q Consensus 322 i~~mq~~l~~v-~~~f~y~ 339 (374)
..+|+++.++. .++|.|.
T Consensus 340 ~~~~~~~~~~~~~~~fs~~ 358 (371)
T cd04962 340 WQEFSRAARNRAAERFDSE 358 (371)
T ss_pred HHHHHHHHHHHHHHhCCHH
Confidence 88898888765 6666544
No 22
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=96.17 E-value=0.049 Score=54.98 Aligned_cols=93 Identities=15% Similarity=0.156 Sum_probs=65.7
Q ss_pred hHHhhhcCCcEEEeeCCC------CCCchhHHHHHhcCceeEEEecccccCCCCCCCCCcEEEEEcCCChhhHHHHHhcC
Q 017299 244 PYADGLLGSKFCLHVKGF------EVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKGI 317 (374)
Q Consensus 244 ~y~~~l~~S~FCL~p~G~------~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~iDw~~fsV~v~e~~v~~l~~~L~~i 317 (374)
+..+.++.|..++.|.=. .....-++|||.+|| |||.++.-- ..++|.=..-.+.+++.|..++-+.+..+
T Consensus 291 el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~-PVI~t~~~g--~~E~v~~~~~G~lv~~~d~~~la~ai~~l 367 (406)
T PRK15427 291 EVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGI-PVVSTLHSG--IPELVEADKSGWLVPENDAQALAQRLAAF 367 (406)
T ss_pred HHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCC-CEEEeCCCC--chhhhcCCCceEEeCCCCHHHHHHHHHHH
Confidence 677889999999888521 223467999999995 999887432 23455445567788999988877776654
Q ss_pred ---CHHHHHHHHHHHHh-hhccceec
Q 017299 318 ---SSEEYLLLQNNVLK-VRKHFQWH 339 (374)
Q Consensus 318 ---~~~~i~~mq~~l~~-v~~~f~y~ 339 (374)
++++..+|.++.++ +.+.|-|+
T Consensus 368 ~~~d~~~~~~~~~~ar~~v~~~f~~~ 393 (406)
T PRK15427 368 SQLDTDELAPVVKRAREKVETDFNQQ 393 (406)
T ss_pred HhCCHHHHHHHHHHHHHHHHHhcCHH
Confidence 66778888887764 56666443
No 23
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=96.11 E-value=0.037 Score=52.67 Aligned_cols=86 Identities=16% Similarity=0.068 Sum_probs=61.9
Q ss_pred chHHhhhcCCcEEEeeCC-CCCCchhHHHHHhcCceeEEEecccccCCCCCCCCCcEEEEEcCCChhhHHHHHhcC--CH
Q 017299 243 TPYADGLLGSKFCLHVKG-FEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKGI--SS 319 (374)
Q Consensus 243 ~~y~~~l~~S~FCL~p~G-~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~iDw~~fsV~v~e~~v~~l~~~L~~i--~~ 319 (374)
.+..+.++.|..+++|.- ....+..++|||.+| +|||.++.- ...+.++-....+.++..+..++.+.+..+ .+
T Consensus 254 ~~~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~a~G-~Pvi~~~~~--~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~~ 330 (359)
T cd03823 254 EEIDDFYAEIDVLVVPSIWPENFPLVIREALAAG-VPVIASDIG--GMAELVRDGVNGLLFPPGDAEDLAAALERLIDDP 330 (359)
T ss_pred HHHHHHHHhCCEEEEcCcccCCCChHHHHHHHCC-CCEEECCCC--CHHHHhcCCCcEEEECCCCHHHHHHHHHHHHhCh
Confidence 367788999999999964 344567899999999 677777632 234556666678888888887766665554 46
Q ss_pred HHHHHHHHHHHh
Q 017299 320 EEYLLLQNNVLK 331 (374)
Q Consensus 320 ~~i~~mq~~l~~ 331 (374)
+...+|+++.++
T Consensus 331 ~~~~~~~~~~~~ 342 (359)
T cd03823 331 DLLERLRAGIEP 342 (359)
T ss_pred HHHHHHHHhHHH
Confidence 777777776544
No 24
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=96.03 E-value=0.045 Score=51.90 Aligned_cols=92 Identities=13% Similarity=0.100 Sum_probs=62.1
Q ss_pred hHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEecccccCCCCCCCCCcEEEEEcCCChhhHHHHHhcC--CHHH
Q 017299 244 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKGI--SSEE 321 (374)
Q Consensus 244 ~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~iDw~~fsV~v~e~~v~~l~~~L~~i--~~~~ 321 (374)
+..+.|+.|..+++|......+.-++||+.+|| |||.++.-. ..+.++= ..+.++..+..++.+.+..+ .+++
T Consensus 261 ~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~g~-PvI~~~~~~--~~e~~~~--~g~~~~~~~~~~l~~~i~~l~~~~~~ 335 (365)
T cd03807 261 DVPALLNALDVFVLSSLSEGFPNVLLEAMACGL-PVVATDVGD--NAELVGD--TGFLVPPGDPEALAEAIEALLADPAL 335 (365)
T ss_pred cHHHHHHhCCEEEeCCccccCCcHHHHHHhcCC-CEEEcCCCC--hHHHhhc--CCEEeCCCCHHHHHHHHHHHHhChHH
Confidence 567789999999999877667788999999996 788876421 1222211 55677777777666666554 3466
Q ss_pred HHHHHHHHHh-hhccceecc
Q 017299 322 YLLLQNNVLK-VRKHFQWHV 340 (374)
Q Consensus 322 i~~mq~~l~~-v~~~f~y~~ 340 (374)
..+|.++.++ +.+.|.|+.
T Consensus 336 ~~~~~~~~~~~~~~~~s~~~ 355 (365)
T cd03807 336 RQALGEAARERIEENFSIEA 355 (365)
T ss_pred HHHHHHHHHHHHHHhCCHHH
Confidence 6677666654 456665543
No 25
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=95.91 E-value=0.03 Score=52.98 Aligned_cols=93 Identities=13% Similarity=0.118 Sum_probs=61.6
Q ss_pred hHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEecccccCCCCCCCCCcEEEEEcCCChhhHHHHHhcC-CHHHH
Q 017299 244 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKGI-SSEEY 322 (374)
Q Consensus 244 ~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~iDw~~fsV~v~e~~v~~l~~~L~~i-~~~~i 322 (374)
+..+.+.+|.++++|......+..++||+.+|| |||.++.-. ..+.+.-....+.+...+..++.+.|..+ ...+.
T Consensus 271 ~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~-pvI~~~~~~--~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~ 347 (377)
T cd03798 271 EVPAYYAAADVFVLPSLREGFGLVLLEAMACGL-PVVATDVGG--IPEIITDGENGLLVPPGDPEALAEAILRLLADPWL 347 (377)
T ss_pred HHHHHHHhcCeeecchhhccCChHHHHHHhcCC-CEEEecCCC--hHHHhcCCcceeEECCCCHHHHHHHHHHHhcCcHH
Confidence 577889999999999877667788999999998 677776421 23344444546778888887766666554 22222
Q ss_pred HHHHHHHHhhhccceec
Q 017299 323 LLLQNNVLKVRKHFQWH 339 (374)
Q Consensus 323 ~~mq~~l~~v~~~f~y~ 339 (374)
...+++...+.+.|.|+
T Consensus 348 ~~~~~~~~~~~~~~s~~ 364 (377)
T cd03798 348 RLGRAARRRVAERFSWE 364 (377)
T ss_pred HHhHHHHHHHHHHhhHH
Confidence 33444444566666554
No 26
>PRK10307 putative glycosyl transferase; Provisional
Probab=95.83 E-value=0.046 Score=54.72 Aligned_cols=102 Identities=8% Similarity=0.022 Sum_probs=69.6
Q ss_pred ccCccc-chHHhhhcCCcEEEeeCCCCC----CchhHHHHHhcCceeEEEecccccCCCCCCCCCcEEEEEcCCChhhHH
Q 017299 237 HSGRLK-TPYADGLLGSKFCLHVKGFEV----NTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLK 311 (374)
Q Consensus 237 ~~g~~~-~~y~~~l~~S~FCL~p~G~~~----~s~Rl~dAi~~GCIPVii~d~~~lPF~~~iDw~~fsV~v~e~~v~~l~ 311 (374)
..|..+ .+..+.++.|..++.|.-.+. ....++|||.+| +|||.++.--....+++. ...+.++..++.++.
T Consensus 288 f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G-~PVi~s~~~g~~~~~~i~--~~G~~~~~~d~~~la 364 (412)
T PRK10307 288 FLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASG-RNVVATAEPGTELGQLVE--GIGVCVEPESVEALV 364 (412)
T ss_pred EeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcC-CCEEEEeCCCchHHHHHh--CCcEEeCCCCHHHHH
Confidence 344433 367788999998888753322 234589999999 688888742223345566 467788888988888
Q ss_pred HHHhcC--CHHHHHHHHHHHHh-hhccceeccC
Q 017299 312 KILKGI--SSEEYLLLQNNVLK-VRKHFQWHVF 341 (374)
Q Consensus 312 ~~L~~i--~~~~i~~mq~~l~~-v~~~f~y~~~ 341 (374)
+.|..+ +++...+|.++.++ +.++|.|+..
T Consensus 365 ~~i~~l~~~~~~~~~~~~~a~~~~~~~fs~~~~ 397 (412)
T PRK10307 365 AAIAALARQALLRPKLGTVAREYAERTLDKENV 397 (412)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 877665 46777888888775 5667766653
No 27
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=95.80 E-value=0.028 Score=55.06 Aligned_cols=94 Identities=15% Similarity=0.144 Sum_probs=67.0
Q ss_pred hHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEecccccCCCCCCCCCcEEEEEcCCChhhHHHHHhcC--CHHH
Q 017299 244 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKGI--SSEE 321 (374)
Q Consensus 244 ~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~iDw~~fsV~v~e~~v~~l~~~L~~i--~~~~ 321 (374)
+..+.++.|..+++|.-......-++|||.+| +|||.++.- ...+.|.=....+.++..+..++.+.+..+ ++++
T Consensus 295 ~~~~~~~~adi~l~ps~~e~~~~~l~Ea~a~G-~Pvi~s~~~--~~~e~i~~~~~g~~~~~~~~~~l~~~i~~l~~~~~~ 371 (398)
T cd03800 295 DLPALYRAADVFVNPALYEPFGLTALEAMACG-LPVVATAVG--GPRDIVVDGVTGLLVDPRDPEALAAALRRLLTDPAL 371 (398)
T ss_pred HHHHHHHhCCEEEecccccccCcHHHHHHhcC-CCEEECCCC--CHHHHccCCCCeEEeCCCCHHHHHHHHHHHHhCHHH
Confidence 56677899999999876655667899999999 599988742 334445444567778888877766665544 4777
Q ss_pred HHHHHHHHHhh-hccceecc
Q 017299 322 YLLLQNNVLKV-RKHFQWHV 340 (374)
Q Consensus 322 i~~mq~~l~~v-~~~f~y~~ 340 (374)
..+|.++.++. .++|.|+.
T Consensus 372 ~~~~~~~a~~~~~~~~s~~~ 391 (398)
T cd03800 372 RRRLSRAGLRRARARYTWER 391 (398)
T ss_pred HHHHHHHHHHHHHHhCCHHH
Confidence 88888877654 37776654
No 28
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=95.79 E-value=0.071 Score=52.41 Aligned_cols=94 Identities=13% Similarity=0.116 Sum_probs=64.2
Q ss_pred hHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEecccccCCCCCCCCCcEEEEEcCCCh------hhHHHHHhcC
Q 017299 244 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDI------PLLKKILKGI 317 (374)
Q Consensus 244 ~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~iDw~~fsV~v~e~~v------~~l~~~L~~i 317 (374)
+..+.|+.|..++.|.-......-++||+.+|| |||.+|.-- ..+++.=....+.++..+. ..+.+.|..+
T Consensus 273 ~~~~~~~~aDv~v~ps~~e~~g~~~lEA~a~G~-PvI~s~~~~--~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~~l 349 (388)
T TIGR02149 273 ELVELLSNAEVFVCPSIYEPLGIVNLEAMACGT-PVVASATGG--IPEVVVDGETGFLVPPDNSDADGFQAELAKAINIL 349 (388)
T ss_pred HHHHHHHhCCEEEeCCccCCCChHHHHHHHcCC-CEEEeCCCC--HHHHhhCCCceEEcCCCCCcccchHHHHHHHHHHH
Confidence 677889999999998755555677899999998 899887422 2344433445667776665 5555555443
Q ss_pred --CHHHHHHHHHHHHh-hhccceecc
Q 017299 318 --SSEEYLLLQNNVLK-VRKHFQWHV 340 (374)
Q Consensus 318 --~~~~i~~mq~~l~~-v~~~f~y~~ 340 (374)
++++..+|.++.++ +.+.|.|+.
T Consensus 350 ~~~~~~~~~~~~~a~~~~~~~~s~~~ 375 (388)
T TIGR02149 350 LADPELAKKMGIAGRKRAEEEFSWGS 375 (388)
T ss_pred HhCHHHHHHHHHHHHHHHHHhCCHHH
Confidence 56777788777664 456676654
No 29
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=95.67 E-value=0.082 Score=50.81 Aligned_cols=91 Identities=15% Similarity=0.183 Sum_probs=59.6
Q ss_pred hHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEecccccCCCCCCCCCcEEEEEcCCChhhHHHHHhcC---CHH
Q 017299 244 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKGI---SSE 320 (374)
Q Consensus 244 ~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~iDw~~fsV~v~e~~v~~l~~~L~~i---~~~ 320 (374)
+..+.|+.|...+.|.........++|||.+|| |||.+|.- ...+.+. +....++..+..++.+.+..+ +++
T Consensus 255 ~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~G~-PvI~~~~~--~~~e~i~--~~g~~~~~~~~~~~~~~i~~ll~~~~~ 329 (360)
T cd04951 255 DIAAYYNAADLFVLSSAWEGFGLVVAEAMACEL-PVVATDAG--GVREVVG--DSGLIVPISDPEALANKIDEILKMSGE 329 (360)
T ss_pred cHHHHHHhhceEEecccccCCChHHHHHHHcCC-CEEEecCC--ChhhEec--CCceEeCCCCHHHHHHHHHHHHhCCHH
Confidence 567789999998888876666788999999999 88888742 1223322 134556667777666655443 455
Q ss_pred HHHHHHHHHHhhhccceec
Q 017299 321 EYLLLQNNVLKVRKHFQWH 339 (374)
Q Consensus 321 ~i~~mq~~l~~v~~~f~y~ 339 (374)
....|.++...+.+.|.|+
T Consensus 330 ~~~~~~~~~~~~~~~~s~~ 348 (360)
T cd04951 330 ERDIIGARRERIVKKFSIN 348 (360)
T ss_pred HHHHHHHHHHHHHHhcCHH
Confidence 5555655534455666443
No 30
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=95.64 E-value=0.038 Score=53.79 Aligned_cols=79 Identities=14% Similarity=0.072 Sum_probs=52.5
Q ss_pred eeccCcccc-hHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEecccccCCCCCCCCCcEEEEEcCCChhhHHHH
Q 017299 235 YAHSGRLKT-PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKI 313 (374)
Q Consensus 235 ~~~~g~~~~-~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~iDw~~fsV~v~e~~v~~l~~~ 313 (374)
+...|..+. +..+.++.|..+++|.- ...+..++|||.+|| |||.++.-- ..+++.=.+..+.++..+...+.+.
T Consensus 244 V~~~g~~~~~~~~~~~~~ad~~v~ps~-e~~g~~~~Eama~G~-Pvi~~~~~~--~~e~i~~~~~G~~~~~~~~~~la~~ 319 (351)
T cd03804 244 VTFLGRVSDEELRDLYARARAFLFPAE-EDFGIVPVEAMASGT-PVIAYGKGG--ALETVIDGVTGILFEEQTVESLAAA 319 (351)
T ss_pred EEEecCCCHHHHHHHHHhCCEEEECCc-CCCCchHHHHHHcCC-CEEEeCCCC--CcceeeCCCCEEEeCCCCHHHHHHH
Confidence 333454433 57888999999998865 334566899999998 999887422 2333432356778888777766655
Q ss_pred HhcC
Q 017299 314 LKGI 317 (374)
Q Consensus 314 L~~i 317 (374)
|..+
T Consensus 320 i~~l 323 (351)
T cd03804 320 VERF 323 (351)
T ss_pred HHHH
Confidence 5544
No 31
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=95.60 E-value=0.09 Score=52.41 Aligned_cols=95 Identities=7% Similarity=0.059 Sum_probs=60.8
Q ss_pred hHHhhhcCCcEEEeeCCC-CCCchhHHHHHhcCceeEEEecccccCCCCCCCCCcEEE-EEcCCChhhHHHHHhcC-CHH
Q 017299 244 PYADGLLGSKFCLHVKGF-EVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSI-VVATLDIPLLKKILKGI-SSE 320 (374)
Q Consensus 244 ~y~~~l~~S~FCL~p~G~-~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~iDw~~fsV-~v~e~~v~~l~~~L~~i-~~~ 320 (374)
+..+.++.|..+++|... .....-++|||++| +|||.++.- ...+++.=..... .++..+..++.+.|..+ ++.
T Consensus 269 ~l~~~~~~aDv~v~pS~~~E~f~~~~lEAma~G-~PVI~s~~g--g~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~d~ 345 (380)
T PRK15484 269 KMHNYYPLADLVVVPSQVEEAFCMVAVEAMAAG-KPVLASTKG--GITEFVLEGITGYHLAEPMTSDSIISDINRTLADP 345 (380)
T ss_pred HHHHHHHhCCEEEeCCCCccccccHHHHHHHcC-CCEEEeCCC--CcHhhcccCCceEEEeCCCCHHHHHHHHHHHHcCH
Confidence 567789999999998754 44557799999999 789998852 2334442223333 45666776655555433 333
Q ss_pred HHHHHHHHHH-hhhccceeccC
Q 017299 321 EYLLLQNNVL-KVRKHFQWHVF 341 (374)
Q Consensus 321 ~i~~mq~~l~-~v~~~f~y~~~ 341 (374)
+..+|.++.+ .+.++|.|+..
T Consensus 346 ~~~~~~~~ar~~~~~~fsw~~~ 367 (380)
T PRK15484 346 ELTQIAEQAKDFVFSKYSWEGV 367 (380)
T ss_pred HHHHHHHHHHHHHHHhCCHHHH
Confidence 4566777665 35677766553
No 32
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=95.58 E-value=0.086 Score=54.07 Aligned_cols=93 Identities=20% Similarity=0.249 Sum_probs=61.5
Q ss_pred hHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEecccccCCCCCC-CCC-----cEEEEEcCCChhhHHHHHhcC
Q 017299 244 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADIL-NWK-----SFSIVVATLDIPLLKKILKGI 317 (374)
Q Consensus 244 ~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~i-Dw~-----~fsV~v~e~~v~~l~~~L~~i 317 (374)
...+.++.|.++++|.-..+...-..|||.+||.||+ ++.- ...++| |.+ ...+.+++.+..++.+.|..+
T Consensus 358 ~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~-s~~g--g~~e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~ 434 (473)
T TIGR02095 358 LAHLIYAGADFILMPSRFEPCGLTQLYAMRYGTVPIV-RRTG--GLADTVVDGDPEAESGTGFLFEEYDPGALLAALSRA 434 (473)
T ss_pred HHHHHHHhCCEEEeCCCcCCcHHHHHHHHHCCCCeEE-ccCC--CccceEecCCCCCCCCceEEeCCCCHHHHHHHHHHH
Confidence 4557889999999998777777889999999996654 5432 223332 321 567778888877666655443
Q ss_pred ------CHHHHHHHHHHHHhhhccceeccC
Q 017299 318 ------SSEEYLLLQNNVLKVRKHFQWHVF 341 (374)
Q Consensus 318 ------~~~~i~~mq~~l~~v~~~f~y~~~ 341 (374)
.++...+|.++.. .+.|.|+..
T Consensus 435 l~~~~~~~~~~~~~~~~~~--~~~fsw~~~ 462 (473)
T TIGR02095 435 LRLYRQDPSLWEALQKNAM--SQDFSWDKS 462 (473)
T ss_pred HHHHhcCHHHHHHHHHHHh--ccCCCcHHH
Confidence 4566677766542 356666543
No 33
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=95.58 E-value=0.15 Score=48.50 Aligned_cols=90 Identities=14% Similarity=0.147 Sum_probs=59.1
Q ss_pred chHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEecccccCCCCCCCCCcEEEEEcCCChhhHHHHHhcC--CHH
Q 017299 243 TPYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKGI--SSE 320 (374)
Q Consensus 243 ~~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~iDw~~fsV~v~e~~v~~l~~~L~~i--~~~ 320 (374)
.+..+.++.|.++++|......+..++|||.+|| |||.++.- .+.+.+.=..-.+.++..+. ++.+.+..+ .++
T Consensus 270 ~~~~~~~~~ad~~l~~s~~e~~~~~~~Ea~~~g~-PvI~~~~~--~~~~~i~~~~~g~~~~~~~~-~~~~~i~~l~~~~~ 345 (374)
T cd03817 270 EELPDYYKAADLFVFASTTETQGLVLLEAMAAGL-PVVAVDAP--GLPDLVADGENGFLFPPGDE-ALAEALLRLLQDPE 345 (374)
T ss_pred HHHHHHHHHcCEEEecccccCcChHHHHHHHcCC-cEEEeCCC--ChhhheecCceeEEeCCCCH-HHHHHHHHHHhChH
Confidence 3677889999999999876666788999999986 55666532 23344444455666666653 444433333 355
Q ss_pred HHHHHHHHHHhhhccc
Q 017299 321 EYLLLQNNVLKVRKHF 336 (374)
Q Consensus 321 ~i~~mq~~l~~v~~~f 336 (374)
...+|.++.++....+
T Consensus 346 ~~~~~~~~~~~~~~~~ 361 (374)
T cd03817 346 LRRRLSKNAEESAEKF 361 (374)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5678888777665554
No 34
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=95.54 E-value=0.13 Score=50.51 Aligned_cols=104 Identities=12% Similarity=0.015 Sum_probs=65.3
Q ss_pred CceeccCcccc-hHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEecccccCCCCCCCCCcEEEEEcCCChhhHH
Q 017299 233 EIYAHSGRLKT-PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLK 311 (374)
Q Consensus 233 ~~~~~~g~~~~-~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~iDw~~fsV~v~e~~v~~l~ 311 (374)
+.+...|..+. ...+.++.|.+++.|........-++|||.+| +|||.+|.-- ..+.|.-..-.+.++. +..++.
T Consensus 280 ~~V~f~g~~~~~~~~~~l~~ad~~l~~s~~E~~g~~~lEAma~G-~PvI~s~~~~--~~e~i~~~~~g~~~~~-~~~~~a 355 (392)
T cd03805 280 DQVIFLPSISDSQKELLLSSARALLYTPSNEHFGIVPLEAMYAG-KPVIACNSGG--PLETVVDGETGFLCEP-TPEEFA 355 (392)
T ss_pred ceEEEeCCCChHHHHHHHhhCeEEEECCCcCCCCchHHHHHHcC-CCEEEECCCC--cHHHhccCCceEEeCC-CHHHHH
Confidence 34445565443 55678999999999877665567789999999 5777777421 1233333334455654 565554
Q ss_pred HHHhcC--CHHHHHHHHHHHHh-hhccceecc
Q 017299 312 KILKGI--SSEEYLLLQNNVLK-VRKHFQWHV 340 (374)
Q Consensus 312 ~~L~~i--~~~~i~~mq~~l~~-v~~~f~y~~ 340 (374)
+.+..+ .++...+|+++.++ +.+.|.|..
T Consensus 356 ~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~ 387 (392)
T cd03805 356 EAMLKLANDPDLADRMGAAGRKRVKEKFSTEA 387 (392)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHhcCHHH
Confidence 544443 35667888777665 566676653
No 35
>PRK14098 glycogen synthase; Provisional
Probab=95.50 E-value=0.086 Score=54.67 Aligned_cols=94 Identities=16% Similarity=0.188 Sum_probs=62.0
Q ss_pred hHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEecccccCCCCCC-CC---CcEEEEEcCCChhhHHHHHhcC--
Q 017299 244 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADIL-NW---KSFSIVVATLDIPLLKKILKGI-- 317 (374)
Q Consensus 244 ~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~i-Dw---~~fsV~v~e~~v~~l~~~L~~i-- 317 (374)
...+.++.|.+++.|.-..+...-..|||++||+||+...+= + .+.+ |. ..-.+.++..+...+.+.|..+
T Consensus 374 ~~~~~~a~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GG-l--~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~ 450 (489)
T PRK14098 374 FFHLAIAGLDMLLMPGKIESCGMLQMFAMSYGTIPVAYAGGG-I--VETIEEVSEDKGSGFIFHDYTPEALVAKLGEALA 450 (489)
T ss_pred HHHHHHHhCCEEEeCCCCCCchHHHHHHHhCCCCeEEecCCC-C--ceeeecCCCCCCceeEeCCCCHHHHHHHHHHHHH
Confidence 456788999999999877777788999999999999865421 1 1111 21 3456778888877766655431
Q ss_pred ---CHHHHHHHHHHHHhhhccceeccCC
Q 017299 318 ---SSEEYLLLQNNVLKVRKHFQWHVFP 342 (374)
Q Consensus 318 ---~~~~i~~mq~~l~~v~~~f~y~~~~ 342 (374)
.++++.+|+++. +.+.|.|+...
T Consensus 451 ~~~~~~~~~~~~~~~--~~~~fsw~~~a 476 (489)
T PRK14098 451 LYHDEERWEELVLEA--MERDFSWKNSA 476 (489)
T ss_pred HHcCHHHHHHHHHHH--hcCCCChHHHH
Confidence 456666666543 34566666543
No 36
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=95.47 E-value=0.1 Score=51.11 Aligned_cols=94 Identities=14% Similarity=0.114 Sum_probs=65.3
Q ss_pred hHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEecccccCCCCCCCCCcEEEEEcCCChhhHHHHHhcC--CHHH
Q 017299 244 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKGI--SSEE 321 (374)
Q Consensus 244 ~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~iDw~~fsV~v~e~~v~~l~~~L~~i--~~~~ 321 (374)
+..+.++++..++.|.-......-+.|||.+|| |||.+|--.-| .+.+.=.+..+.++..+..++.+.|..+ .++.
T Consensus 271 ~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~-PvI~~~~~~g~-~~~v~~~~~G~lv~~~d~~~la~~i~~ll~~~~~ 348 (372)
T cd04949 271 DLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGL-PVISYDVNYGP-SEIIEDGENGYLVPKGDIEALAEAIIELLNDPKL 348 (372)
T ss_pred CHHHHHhhhhEEEecccccccChHHHHHHhCCC-CEEEecCCCCc-HHHcccCCCceEeCCCcHHHHHHHHHHHHcCHHH
Confidence 566788899999888755556678999999998 78777621111 2334334566777888877766665554 5678
Q ss_pred HHHHHHHHHhhhccceec
Q 017299 322 YLLLQNNVLKVRKHFQWH 339 (374)
Q Consensus 322 i~~mq~~l~~v~~~f~y~ 339 (374)
+.+|+++..+..+.|.|.
T Consensus 349 ~~~~~~~a~~~~~~~s~~ 366 (372)
T cd04949 349 LQKFSEAAYENAERYSEE 366 (372)
T ss_pred HHHHHHHHHHHHHHhhHH
Confidence 889988887766666554
No 37
>PRK14099 glycogen synthase; Provisional
Probab=95.36 E-value=0.15 Score=52.75 Aligned_cols=94 Identities=22% Similarity=0.282 Sum_probs=62.7
Q ss_pred hHHhhh-cCCcEEEeeCCCCCCchhHHHHHhcCceeEEEecccccCCCC-CCCCC--------cEEEEEcCCChhhHHHH
Q 017299 244 PYADGL-LGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFAD-ILNWK--------SFSIVVATLDIPLLKKI 313 (374)
Q Consensus 244 ~y~~~l-~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~-~iDw~--------~fsV~v~e~~v~~l~~~ 313 (374)
+....+ +.|.+.+.|.-..+...-..|||++||+||+ ++.=-+ .| ++|.+ .-.+.++..+...|.+.
T Consensus 361 ~l~~~~~a~aDifv~PS~~E~fGl~~lEAma~G~ppVv-s~~GGl--~d~V~~~~~~~~~~~~~~G~l~~~~d~~~La~a 437 (485)
T PRK14099 361 ALAHLIQAGADALLVPSRFEPCGLTQLCALRYGAVPVV-ARVGGL--ADTVVDANEMAIATGVATGVQFSPVTADALAAA 437 (485)
T ss_pred HHHHHHHhcCCEEEECCccCCCcHHHHHHHHCCCCcEE-eCCCCc--cceeecccccccccCCCceEEeCCCCHHHHHHH
Confidence 445555 4688888887777778889999999999988 442111 22 23442 35778888888776666
Q ss_pred Hhc----C-CHHHHHHHHHHHHhhhccceeccCC
Q 017299 314 LKG----I-SSEEYLLLQNNVLKVRKHFQWHVFP 342 (374)
Q Consensus 314 L~~----i-~~~~i~~mq~~l~~v~~~f~y~~~~ 342 (374)
|.. + .++...+|+++.. .+.|.|+...
T Consensus 438 i~~a~~l~~d~~~~~~l~~~~~--~~~fSw~~~a 469 (485)
T PRK14099 438 LRKTAALFADPVAWRRLQRNGM--TTDVSWRNPA 469 (485)
T ss_pred HHHHHHHhcCHHHHHHHHHHhh--hhcCChHHHH
Confidence 643 2 4677777887653 4567666543
No 38
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=95.35 E-value=0.14 Score=51.88 Aligned_cols=130 Identities=14% Similarity=0.097 Sum_probs=76.1
Q ss_pred ceEEEEeccCC----chHHHHHHHHHhc--CCCceeccCccc-chHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCceeE
Q 017299 207 NKLAFFAGAVN----SPVREKLLQVWRN--DSEIYAHSGRLK-TPYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPV 279 (374)
Q Consensus 207 ~~l~~F~G~~~----~~~R~~L~~~~~~--~~~~~~~~g~~~-~~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPV 279 (374)
+.-+.+.|... ...+..|.+..++ -.+.+...|..+ .+..+.|+.|..++.|.-....+.-++|||++||.||
T Consensus 273 ~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~~l~~~l~~adv~v~~s~~E~Fgi~~lEAMa~G~pvI 352 (419)
T cd03806 273 KIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFEELLEELSTASIGLHTMWNEHFGIGVVEYMAAGLIPL 352 (419)
T ss_pred ceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHhCeEEEECCccCCcccHHHHHHHcCCcEE
Confidence 46677777632 1223334333322 223445556544 4778899999999988766666788999999999766
Q ss_pred EEecccccCCCCCCC---CCcEEEEEcCCChhhHHHHHhc---CCHHHHHHHHHHHHhhhccceecc
Q 017299 280 IIANHYDLPFADILN---WKSFSIVVATLDIPLLKKILKG---ISSEEYLLLQNNVLKVRKHFQWHV 340 (374)
Q Consensus 280 ii~d~~~lPF~~~iD---w~~fsV~v~e~~v~~l~~~L~~---i~~~~i~~mq~~l~~v~~~f~y~~ 340 (374)
. ++. --|.++++. =..-.+.++ +..++-+.+.. .+++....|+++-+++.++|.|+.
T Consensus 353 a-~~~-ggp~~~iv~~~~~g~~G~l~~--d~~~la~ai~~ll~~~~~~~~~~~~~~~~~~~~fs~~~ 415 (419)
T cd03806 353 A-HAS-GGPLLDIVVPWDGGPTGFLAS--TAEEYAEAIEKILSLSEEERLRIRRAARSSVKRFSDEE 415 (419)
T ss_pred E-EcC-CCCchheeeccCCCCceEEeC--CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCHHH
Confidence 4 442 135556553 233333332 44444333322 356666667777777777775543
No 39
>PRK00654 glgA glycogen synthase; Provisional
Probab=95.07 E-value=0.15 Score=52.37 Aligned_cols=92 Identities=18% Similarity=0.301 Sum_probs=60.5
Q ss_pred HHhhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEecccccCCCCC-CCCC-----cEEEEEcCCChhhHHHHHhcC-
Q 017299 245 YADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADI-LNWK-----SFSIVVATLDIPLLKKILKGI- 317 (374)
Q Consensus 245 y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~-iDw~-----~fsV~v~e~~v~~l~~~L~~i- 317 (374)
....++.|.+++.|.=..+...-+.|||.+||+||+-..+ -..+. .|.+ .-.+.++..+..+|.+.|..+
T Consensus 350 ~~~~~~~aDv~v~PS~~E~~gl~~lEAma~G~p~V~~~~g---G~~e~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l 426 (466)
T PRK00654 350 AHRIYAGADMFLMPSRFEPCGLTQLYALRYGTLPIVRRTG---GLADTVIDYNPEDGEATGFVFDDFNAEDLLRALRRAL 426 (466)
T ss_pred HHHHHhhCCEEEeCCCCCCchHHHHHHHHCCCCEEEeCCC---CccceeecCCCCCCCCceEEeCCCCHHHHHHHHHHHH
Confidence 4567899999999987777778899999999988774322 11222 2331 457778888887766665543
Q ss_pred ----CHHHHHHHHHHHHhhhccceeccC
Q 017299 318 ----SSEEYLLLQNNVLKVRKHFQWHVF 341 (374)
Q Consensus 318 ----~~~~i~~mq~~l~~v~~~f~y~~~ 341 (374)
.++...+|.++.. .+.|.|+..
T Consensus 427 ~~~~~~~~~~~~~~~~~--~~~fsw~~~ 452 (466)
T PRK00654 427 ELYRQPPLWRALQRQAM--AQDFSWDKS 452 (466)
T ss_pred HHhcCHHHHHHHHHHHh--ccCCChHHH
Confidence 3455666666542 356655543
No 40
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=94.97 E-value=0.23 Score=47.67 Aligned_cols=93 Identities=15% Similarity=0.084 Sum_probs=62.4
Q ss_pred hHHhhhcCCcEEEeeCC--CCCCchhHHHHHhcCceeEEEecccccCCCCCC-CCCcEEEEEcCCChhhHHHHHhcC--C
Q 017299 244 PYADGLLGSKFCLHVKG--FEVNTARIADSLYYGCVPVIIANHYDLPFADIL-NWKSFSIVVATLDIPLLKKILKGI--S 318 (374)
Q Consensus 244 ~y~~~l~~S~FCL~p~G--~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~i-Dw~~fsV~v~e~~v~~l~~~L~~i--~ 318 (374)
+..+.++.+..+++|.- .......+.||+.+| +|||.++.-..+ +.+ +.....+.++..+..++.+.+..+ .
T Consensus 256 ~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g-~Pvi~~~~~~~~--~~i~~~~~~g~~~~~~d~~~~~~~i~~l~~~ 332 (357)
T cd03795 256 EKAALLAACDVFVFPSVERSEAFGIVLLEAMAFG-KPVISTEIGTGG--SYVNLHGVTGLVVPPGDPAALAEAIRRLLED 332 (357)
T ss_pred HHHHHHHhCCEEEeCCcccccccchHHHHHHHcC-CCEEecCCCCch--hHHhhCCCceEEeCCCCHHHHHHHHHHHHHC
Confidence 57788889999998852 123346799999997 567777632221 222 235677778888887766666654 5
Q ss_pred HHHHHHHHHHHHh-hhccceec
Q 017299 319 SEEYLLLQNNVLK-VRKHFQWH 339 (374)
Q Consensus 319 ~~~i~~mq~~l~~-v~~~f~y~ 339 (374)
+++..+|.++.++ +.++|.|+
T Consensus 333 ~~~~~~~~~~~~~~~~~~~s~~ 354 (357)
T cd03795 333 PELRERLGEAARERAEEEFTAD 354 (357)
T ss_pred HHHHHHHHHHHHHHHHHhcchH
Confidence 7788888888776 45665543
No 41
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=94.97 E-value=0.055 Score=52.97 Aligned_cols=87 Identities=28% Similarity=0.363 Sum_probs=64.4
Q ss_pred hHHhhhcCCcEEEeeCCCC-----------CCchhHHHHHhcCceeEEEecccccCCCCCCCCCcEEEEEcCCChhhHHH
Q 017299 244 PYADGLLGSKFCLHVKGFE-----------VNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKK 312 (374)
Q Consensus 244 ~y~~~l~~S~FCL~p~G~~-----------~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~iDw~~fsV~v~e~~v~~l~~ 312 (374)
+..+.|+. .|+|++.+++ .....++++|++| +|||+++.-.+ .+++.=....+.++ ++.++.+
T Consensus 219 el~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G-~PVI~~~~~~~--~~~V~~~~~G~~v~--~~~el~~ 292 (333)
T PRK09814 219 ELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAG-LPVIVWSKAAI--ADFIVENGLGFVVD--SLEELPE 292 (333)
T ss_pred HHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCC-CCEEECCCccH--HHHHHhCCceEEeC--CHHHHHH
Confidence 44555655 8999887761 1234588899998 69999875333 24454456777776 6778999
Q ss_pred HHhcCCHHHHHHHHHHHHhhhccc
Q 017299 313 ILKGISSEEYLLLQNNVLKVRKHF 336 (374)
Q Consensus 313 ~L~~i~~~~i~~mq~~l~~v~~~f 336 (374)
.|..++++++.+|+++.+++.+.+
T Consensus 293 ~l~~~~~~~~~~m~~n~~~~~~~~ 316 (333)
T PRK09814 293 IIDNITEEEYQEMVENVKKISKLL 316 (333)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888775
No 42
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=94.70 E-value=0.074 Score=41.59 Aligned_cols=80 Identities=18% Similarity=0.194 Sum_probs=46.4
Q ss_pred EEeeCCCCCCchhHHHHHhcCceeEEEecccccCCCCCCCCCcEEEEEcCCChhhHHHHHhcC--CHHHHHHHHHHHHh-
Q 017299 255 CLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKGI--SSEEYLLLQNNVLK- 331 (374)
Q Consensus 255 CL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~iDw~~fsV~v~e~~v~~l~~~L~~i--~~~~i~~mq~~l~~- 331 (374)
||.|.-.+..+.|++|++.+||..|. .+. ..+.+.++..+-.+.+. +..++.+.+..+ .+++..+|.++..+
T Consensus 2 ~Ln~~~~~~~~~r~~E~~a~G~~vi~-~~~--~~~~~~~~~~~~~~~~~--~~~el~~~i~~ll~~~~~~~~ia~~a~~~ 76 (92)
T PF13524_consen 2 NLNPSRSDGPNMRIFEAMACGTPVIS-DDS--PGLREIFEDGEHIITYN--DPEELAEKIEYLLENPEERRRIAKNARER 76 (92)
T ss_pred EeeCCCCCCCchHHHHHHHCCCeEEE-CCh--HHHHHHcCCCCeEEEEC--CHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 44444334467899999999986444 333 12223356665566665 444433333332 68888888887754
Q ss_pred hhccceec
Q 017299 332 VRKHFQWH 339 (374)
Q Consensus 332 v~~~f~y~ 339 (374)
+..++.|.
T Consensus 77 v~~~~t~~ 84 (92)
T PF13524_consen 77 VLKRHTWE 84 (92)
T ss_pred HHHhCCHH
Confidence 55565443
No 43
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=94.50 E-value=0.4 Score=46.16 Aligned_cols=99 Identities=17% Similarity=0.272 Sum_probs=58.2
Q ss_pred eccCccc-chHHhhhcCCcEEEeeCCC-CCCchhHHHHHhcCceeEEEecccccCCCCCCCCCcEEEEEcCCC-hhhHHH
Q 017299 236 AHSGRLK-TPYADGLLGSKFCLHVKGF-EVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLD-IPLLKK 312 (374)
Q Consensus 236 ~~~g~~~-~~y~~~l~~S~FCL~p~G~-~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~iDw~~fsV~v~e~~-v~~l~~ 312 (374)
...|..+ .+..+.+..+..++.|.-. .....-++|||.+|| |||.++.- +..+++.-. ...++..+ +.+...
T Consensus 251 ~~~g~~~~~~~~~~~~~ad~~v~ps~~~e~~~~~~~EAma~G~-PvI~s~~~--~~~e~~~~~--g~~~~~~~~l~~~i~ 325 (363)
T cd04955 251 IFVGPIYDQELLELLRYAALFYLHGHSVGGTNPSLLEAMAYGC-PVLASDNP--FNREVLGDK--AIYFKVGDDLASLLE 325 (363)
T ss_pred EEccccChHHHHHHHHhCCEEEeCCccCCCCChHHHHHHHcCC-CEEEecCC--ccceeecCC--eeEecCchHHHHHHH
Confidence 3344433 3566788888888887654 445667999999999 77777632 334444332 33445555 443333
Q ss_pred HHhcCCHHHHHHHHHHHHh-hhccceecc
Q 017299 313 ILKGISSEEYLLLQNNVLK-VRKHFQWHV 340 (374)
Q Consensus 313 ~L~~i~~~~i~~mq~~l~~-v~~~f~y~~ 340 (374)
.|.+ .++.+.+|.++.++ +.+.|.|+.
T Consensus 326 ~l~~-~~~~~~~~~~~~~~~~~~~fs~~~ 353 (363)
T cd04955 326 ELEA-DPEEVSAMAKAARERIREKYTWEK 353 (363)
T ss_pred HHHh-CHHHHHHHHHHHHHHHHHhCCHHH
Confidence 3333 34667777776654 344565544
No 44
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=94.42 E-value=0.27 Score=49.69 Aligned_cols=119 Identities=16% Similarity=0.260 Sum_probs=70.7
Q ss_pred ceEEEEeccCCchHHHHHHHHHhcC--CCceeccCcc-cchHHhhhcCCcEEEeeC----CCCCCchhHHHHHhcCceeE
Q 017299 207 NKLAFFAGAVNSPVREKLLQVWRND--SEIYAHSGRL-KTPYADGLLGSKFCLHVK----GFEVNTARIADSLYYGCVPV 279 (374)
Q Consensus 207 ~~l~~F~G~~~~~~R~~L~~~~~~~--~~~~~~~g~~-~~~y~~~l~~S~FCL~p~----G~~~~s~Rl~dAi~~GCIPV 279 (374)
++.+.+.|. |..++.|.+..+.. ++.++..|.. ..+..+.|+.|..+++|. |.+ ...-++|||.+|+ ||
T Consensus 269 ~i~l~ivG~--G~~~~~l~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~aDv~v~~~~~~~~~~-~p~~~~Eama~G~-PV 344 (415)
T cd03816 269 KLLCIITGK--GPLKEKYLERIKELKLKKVTIRTPWLSAEDYPKLLASADLGVSLHTSSSGLD-LPMKVVDMFGCGL-PV 344 (415)
T ss_pred CEEEEEEec--CccHHHHHHHHHHcCCCcEEEEcCcCCHHHHHHHHHhCCEEEEccccccccC-CcHHHHHHHHcCC-CE
Confidence 366777774 34455555544322 2333334433 357888899999887642 222 3567999999998 99
Q ss_pred EEecccccCCCCCCCCCcEEEEEcCCChhhHHHHHhcC-----CHHHHHHHHHHHHhhh
Q 017299 280 IIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKGI-----SSEEYLLLQNNVLKVR 333 (374)
Q Consensus 280 ii~d~~~lPF~~~iDw~~fsV~v~e~~v~~l~~~L~~i-----~~~~i~~mq~~l~~v~ 333 (374)
|.++.-. ..++|.=..-.+.++ +..+|-+.+..+ ++++..+|.++.++..
T Consensus 345 I~s~~~~--~~eiv~~~~~G~lv~--d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 345 CALDFKC--IDELVKHGENGLVFG--DSEELAEQLIDLLSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred EEeCCCC--HHHHhcCCCCEEEEC--CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 9988432 234443233344443 555555544433 2678888888776654
No 45
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=94.29 E-value=0.34 Score=46.12 Aligned_cols=78 Identities=14% Similarity=0.113 Sum_probs=49.0
Q ss_pred eeccCccc-chHHhhhcCCcEEEeeCCC-CCCchhHHHHHhcCceeEEEecccccCCCCCCCCCcEEEEEcCCChhhHHH
Q 017299 235 YAHSGRLK-TPYADGLLGSKFCLHVKGF-EVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKK 312 (374)
Q Consensus 235 ~~~~g~~~-~~y~~~l~~S~FCL~p~G~-~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~iDw~~fsV~v~e~~v~~l~~ 312 (374)
+...|..+ .+..+.++.+.+++.|.-. ......++|||.+|| |||.+|.--. .++++=..-.+.++. +.++.+
T Consensus 226 v~~~G~~~~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~-PvI~~~~~~~--~e~i~~~~~g~l~~~--~~~l~~ 300 (335)
T cd03802 226 IEYLGEVGGAEKAELLGNARALLFPILWEEPFGLVMIEAMACGT-PVIAFRRGAV--PEVVEDGVTGFLVDS--VEELAA 300 (335)
T ss_pred EEEeCCCCHHHHHHHHHhCcEEEeCCcccCCcchHHHHHHhcCC-CEEEeCCCCc--hhheeCCCcEEEeCC--HHHHHH
Confidence 33344433 2566789999999998642 345678999999997 9999985322 344433223334443 556666
Q ss_pred HHhcC
Q 017299 313 ILKGI 317 (374)
Q Consensus 313 ~L~~i 317 (374)
.|..+
T Consensus 301 ~l~~l 305 (335)
T cd03802 301 AVARA 305 (335)
T ss_pred HHHHH
Confidence 55544
No 46
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=94.25 E-value=0.38 Score=46.09 Aligned_cols=95 Identities=9% Similarity=0.047 Sum_probs=63.5
Q ss_pred chHHhhhcCCcEEEeeCCC------CCCchhHHHHHhcCceeEEEecccccCCCCCCCCCcEEEEEcCCChhhHHHHHhc
Q 017299 243 TPYADGLLGSKFCLHVKGF------EVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKG 316 (374)
Q Consensus 243 ~~y~~~l~~S~FCL~p~G~------~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~iDw~~fsV~v~e~~v~~l~~~L~~ 316 (374)
.+..+.++++.++++|... ...+..++||+.+||-.| .++.- ...+++.=..-.+.+++.+..++.+.|..
T Consensus 247 ~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi-~~~~~--~~~~~i~~~~~g~~~~~~~~~~l~~~i~~ 323 (355)
T cd03799 247 EEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVI-STDVS--GIPELVEDGETGLLVPPGDPEALADAIER 323 (355)
T ss_pred HHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHcCCCEE-ecCCC--CcchhhhCCCceEEeCCCCHHHHHHHHHH
Confidence 3677889999999998654 345678999999998654 45532 23444443445677777777766666554
Q ss_pred C--CHHHHHHHHHHHHh-hhccceecc
Q 017299 317 I--SSEEYLLLQNNVLK-VRKHFQWHV 340 (374)
Q Consensus 317 i--~~~~i~~mq~~l~~-v~~~f~y~~ 340 (374)
+ .+++..+|.++.++ +...|.|..
T Consensus 324 ~~~~~~~~~~~~~~a~~~~~~~~s~~~ 350 (355)
T cd03799 324 LLDDPELRREMGEAGRARVEEEFDIRK 350 (355)
T ss_pred HHhCHHHHHHHHHHHHHHHHHhcCHHH
Confidence 4 46667888877664 456665543
No 47
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=94.23 E-value=0.4 Score=47.16 Aligned_cols=93 Identities=18% Similarity=0.140 Sum_probs=59.5
Q ss_pred chHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEecccccCCCCCCCCCcEEEEEcCCC-hh-hHHHHHhcCCHH
Q 017299 243 TPYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLD-IP-LLKKILKGISSE 320 (374)
Q Consensus 243 ~~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~iDw~~fsV~v~e~~-v~-~l~~~L~~i~~~ 320 (374)
....+.++.+..++.|........-++|||.+| +|||.++.-.++ ++|.-....+.++..+ +. .|.+.|. +++
T Consensus 265 ~~~~~~~~~ad~~v~~s~~Eg~g~~~lEA~a~G-~Pvv~s~~~~~~--~~i~~~~~g~~~~~~~~~a~~i~~ll~--~~~ 339 (372)
T cd03792 265 LEVNALQRASTVVLQKSIREGFGLTVTEALWKG-KPVIAGPVGGIP--LQIEDGETGFLVDTVEEAAVRILYLLR--DPE 339 (372)
T ss_pred HHHHHHHHhCeEEEeCCCccCCCHHHHHHHHcC-CCEEEcCCCCch--hhcccCCceEEeCCcHHHHHHHHHHHc--CHH
Confidence 356677889998888876666678899999999 599998843332 3343333344444322 21 2333333 467
Q ss_pred HHHHHHHHHHh-hhccceecc
Q 017299 321 EYLLLQNNVLK-VRKHFQWHV 340 (374)
Q Consensus 321 ~i~~mq~~l~~-v~~~f~y~~ 340 (374)
...+|.++.++ +...|.|+.
T Consensus 340 ~~~~~~~~a~~~~~~~~s~~~ 360 (372)
T cd03792 340 LRRKMGANAREHVRENFLITR 360 (372)
T ss_pred HHHHHHHHHHHHHHHHcCHHH
Confidence 77888888766 456775554
No 48
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=94.22 E-value=0.29 Score=50.36 Aligned_cols=93 Identities=14% Similarity=0.089 Sum_probs=63.1
Q ss_pred hHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEecccccCCCCCCCC------CcEEEEEcCCChhhHHHHHhcC
Q 017299 244 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNW------KSFSIVVATLDIPLLKKILKGI 317 (374)
Q Consensus 244 ~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~iDw------~~fsV~v~e~~v~~l~~~L~~i 317 (374)
+..+.|..+..++.|.-......-++|||.+|| |||.+|.- ...++++= ....+.++..+..++.+.+..+
T Consensus 363 ~v~~~l~~aDv~vlpS~~Eg~p~~vlEAma~G~-PVVatd~g--~~~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~l 439 (475)
T cd03813 363 NVKEYLPKLDVLVLTSISEGQPLVILEAMAAGI-PVVATDVG--SCRELIEGADDEALGPAGEVVPPADPEALARAILRL 439 (475)
T ss_pred cHHHHHHhCCEEEeCchhhcCChHHHHHHHcCC-CEEECCCC--ChHHHhcCCcccccCCceEEECCCCHHHHHHHHHHH
Confidence 566778889988887644445678999999998 88888742 12222221 3467888888887766666554
Q ss_pred --CHHHHHHHHHHHHh-hhccceec
Q 017299 318 --SSEEYLLLQNNVLK-VRKHFQWH 339 (374)
Q Consensus 318 --~~~~i~~mq~~l~~-v~~~f~y~ 339 (374)
+++...+|.++.++ +.+.|.|+
T Consensus 440 l~~~~~~~~~~~~a~~~v~~~~s~~ 464 (475)
T cd03813 440 LKDPELRRAMGEAGRKRVERYYTLE 464 (475)
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCHH
Confidence 57778888877764 55555443
No 49
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=94.13 E-value=0.3 Score=49.84 Aligned_cols=92 Identities=23% Similarity=0.341 Sum_probs=59.0
Q ss_pred hHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEecccccCCCCC-CCCC-----cEEEEEcCCChhhHHHHHhcC
Q 017299 244 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADI-LNWK-----SFSIVVATLDIPLLKKILKGI 317 (374)
Q Consensus 244 ~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~-iDw~-----~fsV~v~e~~v~~l~~~L~~i 317 (374)
...+.++.|.+.+.|.-..+...-+.|||++||.||.-..+ ...+. .|.. .-.+.++..+..++.+.|..+
T Consensus 363 ~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~~~~g---g~~e~v~~~~~~~~~~~G~~~~~~~~~~l~~~i~~~ 439 (476)
T cd03791 363 LAHLIYAGADFFLMPSRFEPCGLTQMYAMRYGTVPIVRATG---GLADTVIDYNEDTGEGTGFVFEGYNADALLAALRRA 439 (476)
T ss_pred HHHHHHHhCCEEECCCCCCCCcHHHHHHhhCCCCCEECcCC---CccceEeCCcCCCCCCCeEEeCCCCHHHHHHHHHHH
Confidence 34567889999999987777778899999999988753322 12222 2332 156778888777666555443
Q ss_pred -----CHHHHHHHHHHHHhhhccceecc
Q 017299 318 -----SSEEYLLLQNNVLKVRKHFQWHV 340 (374)
Q Consensus 318 -----~~~~i~~mq~~l~~v~~~f~y~~ 340 (374)
.+++..+|.++.. ...|.|+.
T Consensus 440 l~~~~~~~~~~~~~~~~~--~~~fsw~~ 465 (476)
T cd03791 440 LALYRDPEAWRKLQRNAM--AQDFSWDR 465 (476)
T ss_pred HHHHcCHHHHHHHHHHHh--ccCCChHH
Confidence 2566666666543 34455543
No 50
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=93.73 E-value=0.88 Score=42.50 Aligned_cols=89 Identities=15% Similarity=0.059 Sum_probs=57.6
Q ss_pred hHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEecccccCCCCCCCCCcEEEEEcCCChhhH----HHHHhcCC-
Q 017299 244 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLL----KKILKGIS- 318 (374)
Q Consensus 244 ~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~iDw~~fsV~v~e~~v~~l----~~~L~~i~- 318 (374)
+..+.++.|.++++|......+..++||+.+||. ||.+|.- ...+++.=....+.++.++...+ ..++....
T Consensus 256 ~~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~G~P-vI~~~~~--~~~e~i~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~ 332 (353)
T cd03811 256 NPYPYLKAADLFVLSSRYEGFPNVLLEAMALGTP-VVATDCP--GPREILEDGENGLLVPVGDEAALAAAALALLDLLLD 332 (353)
T ss_pred CHHHHHHhCCEEEeCcccCCCCcHHHHHHHhCCC-EEEcCCC--ChHHHhcCCCceEEECCCCHHHHHHHHHHHHhccCC
Confidence 4567899999999997665567789999999985 5556543 33445554556777888887775 33333333
Q ss_pred HHHHHHHHH-HHHhhhcc
Q 017299 319 SEEYLLLQN-NVLKVRKH 335 (374)
Q Consensus 319 ~~~i~~mq~-~l~~v~~~ 335 (374)
++...+|.. +...+.++
T Consensus 333 ~~~~~~~~~~~~~~~~~~ 350 (353)
T cd03811 333 PELRERLAAAARERVARE 350 (353)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 455566666 33334443
No 51
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=93.53 E-value=0.72 Score=46.41 Aligned_cols=92 Identities=15% Similarity=0.172 Sum_probs=56.0
Q ss_pred hHHhhhcCCc--EEEeeCCCCCCchhHHHHHhcCceeEEEecccccCCCCCCCCCcEEEEEcC-CChhhHHHHHhcC--C
Q 017299 244 PYADGLLGSK--FCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVAT-LDIPLLKKILKGI--S 318 (374)
Q Consensus 244 ~y~~~l~~S~--FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~iDw~~fsV~v~e-~~v~~l~~~L~~i--~ 318 (374)
+..+.++.+. .++.|.........+.|||.+|+ |||.+|--- ..++|+=..-.+.++. .+..++.+.|..+ +
T Consensus 301 e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~-PVIas~vgg--~~e~i~~~~~G~l~~~~~~~~~la~~I~~ll~~ 377 (407)
T cd04946 301 EVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGI-PVIATNVGG--TPEIVDNGGNGLLLSKDPTPNELVSSLSKFIDN 377 (407)
T ss_pred HHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCC-CEEeCCCCC--cHHHhcCCCcEEEeCCCCCHHHHHHHHHHHHhC
Confidence 4455665533 33334433345677999999995 999888432 2345544444556665 3666655555544 5
Q ss_pred HHHHHHHHHHHHh-hhcccee
Q 017299 319 SEEYLLLQNNVLK-VRKHFQW 338 (374)
Q Consensus 319 ~~~i~~mq~~l~~-v~~~f~y 338 (374)
+++..+|+++.++ +.++|-+
T Consensus 378 ~~~~~~m~~~ar~~~~~~f~~ 398 (407)
T cd04946 378 EEEYQTMREKAREKWEENFNA 398 (407)
T ss_pred HHHHHHHHHHHHHHHHHHcCH
Confidence 7888889888765 3455544
No 52
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=93.47 E-value=0.36 Score=48.10 Aligned_cols=102 Identities=14% Similarity=0.131 Sum_probs=59.2
Q ss_pred cCccc-chHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEecccccCCCCCCCCCcEEEEEcCCChhhHHHHHhc
Q 017299 238 SGRLK-TPYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKG 316 (374)
Q Consensus 238 ~g~~~-~~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~iDw~~fsV~v~e~~v~~l~~~L~~ 316 (374)
.|..+ .+..+.++.+..++.|.-.......+.|||.+|| |||.++.-- ..+++.=. ..+.++. +..++.+.|..
T Consensus 255 ~G~~~~~~~~~~l~~ad~~v~pS~~E~~g~~~~EAma~G~-PVI~s~~gg--~~e~i~~~-~~~~~~~-~~~~l~~~l~~ 329 (398)
T cd03796 255 LGAVPHERVRDVLVQGHIFLNTSLTEAFCIAIVEAASCGL-LVVSTRVGG--IPEVLPPD-MILLAEP-DVESIVRKLEE 329 (398)
T ss_pred eCCCCHHHHHHHHHhCCEEEeCChhhccCHHHHHHHHcCC-CEEECCCCC--chhheeCC-ceeecCC-CHHHHHHHHHH
Confidence 34433 4778889999988887655445678999999997 566676432 23444322 2344443 55544444432
Q ss_pred C---CHHHHHHHHHHHHhhhccceeccCCCC
Q 017299 317 I---SSEEYLLLQNNVLKVRKHFQWHVFPSD 344 (374)
Q Consensus 317 i---~~~~i~~mq~~l~~v~~~f~y~~~~~~ 344 (374)
+ +.++...+++...++.++|.|......
T Consensus 330 ~l~~~~~~~~~~~~~~~~~~~~fs~~~~~~~ 360 (398)
T cd03796 330 AISILRTGKHDPWSFHNRVKKMYSWEDVAKR 360 (398)
T ss_pred HHhChhhhhhHHHHHHHHHHhhCCHHHHHHH
Confidence 2 222223344545567888877665433
No 53
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=93.46 E-value=0.5 Score=46.44 Aligned_cols=72 Identities=15% Similarity=0.127 Sum_probs=50.0
Q ss_pred hHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEecccccCCCCCCCCCcEEEEEcCCChhhHHHHHhcC
Q 017299 244 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKGI 317 (374)
Q Consensus 244 ~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~iDw~~fsV~v~e~~v~~l~~~L~~i 317 (374)
.+.+.++.+..++.|........-++|||++| +|||.+|..-- ..++|.=..-.+.++..+..++.+.+..+
T Consensus 250 ~~~~~~~~~d~~v~~s~~Egf~~~~lEAma~G-~Pvv~s~~~~g-~~eiv~~~~~G~lv~~~d~~~la~~i~~l 321 (359)
T PRK09922 250 VVQQKIKNVSALLLTSKFEGFPMTLLEAMSYG-IPCISSDCMSG-PRDIIKPGLNGELYTPGNIDEFVGKLNKV 321 (359)
T ss_pred HHHHHHhcCcEEEECCcccCcChHHHHHHHcC-CCEEEeCCCCC-hHHHccCCCceEEECCCCHHHHHHHHHHH
Confidence 44566778888888876656678999999999 68888872221 22444334456677888888777766655
No 54
>PLN02949 transferase, transferring glycosyl groups
Probab=93.27 E-value=1.4 Score=45.41 Aligned_cols=102 Identities=15% Similarity=0.097 Sum_probs=60.7
Q ss_pred eeccCccc-chHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEecccccCCCCCC-CC--CcEEEEEcCCChhhH
Q 017299 235 YAHSGRLK-TPYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADIL-NW--KSFSIVVATLDIPLL 310 (374)
Q Consensus 235 ~~~~g~~~-~~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~i-Dw--~~fsV~v~e~~v~~l 310 (374)
+...|..+ .+..+.+++|.+++.|.-+.....-+.|||.+||+||.-..+ =|-++++ ++ ..-.+.+ .++.++
T Consensus 337 V~f~g~v~~~el~~ll~~a~~~v~~s~~E~FGivvlEAMA~G~PVIa~~~g--Gp~~eIV~~~~~g~tG~l~--~~~~~l 412 (463)
T PLN02949 337 VEFHKNVSYRDLVRLLGGAVAGLHSMIDEHFGISVVEYMAAGAVPIAHNSA--GPKMDIVLDEDGQQTGFLA--TTVEEY 412 (463)
T ss_pred EEEeCCCCHHHHHHHHHhCcEEEeCCccCCCChHHHHHHHcCCcEEEeCCC--CCcceeeecCCCCcccccC--CCHHHH
Confidence 44445543 366778899998888765555677899999999887765432 1222332 21 1111112 255554
Q ss_pred HHHHhcC---CHHHHHHHHHHHHhhhccceecc
Q 017299 311 KKILKGI---SSEEYLLLQNNVLKVRKHFQWHV 340 (374)
Q Consensus 311 ~~~L~~i---~~~~i~~mq~~l~~v~~~f~y~~ 340 (374)
-+.+..+ ++++..+|+++.++....|.|+.
T Consensus 413 a~ai~~ll~~~~~~r~~m~~~ar~~~~~FS~e~ 445 (463)
T PLN02949 413 ADAILEVLRMRETERLEIAAAARKRANRFSEQR 445 (463)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCHHH
Confidence 4444332 56777788888776556675544
No 55
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=93.26 E-value=0.29 Score=48.78 Aligned_cols=91 Identities=13% Similarity=0.143 Sum_probs=59.1
Q ss_pred hHHhhhcCCcEEEeeC--CCCCCchhHHHHHhcCceeEEEecccccCCCCCCCCCcEEEEEcCCChhhHHHHHhcC--CH
Q 017299 244 PYADGLLGSKFCLHVK--GFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKGI--SS 319 (374)
Q Consensus 244 ~y~~~l~~S~FCL~p~--G~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~iDw~~fsV~v~e~~v~~l~~~L~~i--~~ 319 (374)
+....++.+..+++|. |.| ....++|||.+|| |||.++.- .+.+..=....+.++ .+..++.+.+..+ ++
T Consensus 290 ~~~~~~~~adv~v~Ps~~~eG-~~~~~lEAma~G~-PVV~t~~~---~~~i~~~~~~g~lv~-~~~~~la~ai~~ll~~~ 363 (397)
T TIGR03087 290 DVRPYLAHAAVAVAPLRIARG-IQNKVLEAMAMAK-PVVASPEA---AEGIDALPGAELLVA-ADPADFAAAILALLANP 363 (397)
T ss_pred CHHHHHHhCCEEEecccccCC-cccHHHHHHHcCC-CEEecCcc---cccccccCCcceEeC-CCHHHHHHHHHHHHcCH
Confidence 5567788999888885 333 3457999999998 99988742 122211123355666 6666665555443 46
Q ss_pred HHHHHHHHHHHh-hhccceecc
Q 017299 320 EEYLLLQNNVLK-VRKHFQWHV 340 (374)
Q Consensus 320 ~~i~~mq~~l~~-v~~~f~y~~ 340 (374)
+...+|.++.++ +.+.|.|+.
T Consensus 364 ~~~~~~~~~ar~~v~~~fsw~~ 385 (397)
T TIGR03087 364 AEREELGQAARRRVLQHYHWPR 385 (397)
T ss_pred HHHHHHHHHHHHHHHHhCCHHH
Confidence 667888887765 557776664
No 56
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=92.77 E-value=0.88 Score=43.72 Aligned_cols=72 Identities=8% Similarity=-0.015 Sum_probs=47.0
Q ss_pred cchHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEecccccCCCCCCCCCcEEEEEcCCChhhHHHHHhcC
Q 017299 242 KTPYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKGI 317 (374)
Q Consensus 242 ~~~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~iDw~~fsV~v~e~~v~~l~~~L~~i 317 (374)
..+..+.+++|.++++|.-....+.-++|||.+||- ||.++.-. ..+++.= ........++..++-+.+..+
T Consensus 257 ~~~~~~~~~~adi~v~ps~~E~~~~~~lEAma~G~P-vI~s~~~~--~~~~i~~-~~~~~~~~~~~~~~a~~i~~l 328 (358)
T cd03812 257 RNDVPELLQAMDVFLFPSLYEGLPLVLIEAQASGLP-CILSDTIT--KEVDLTD-LVKFLSLDESPEIWAEEILKL 328 (358)
T ss_pred cCCHHHHHHhcCEEEecccccCCCHHHHHHHHhCCC-EEEEcCCc--hhhhhcc-CccEEeCCCCHHHHHHHHHHH
Confidence 346678899999999998766678899999999985 55565322 2223222 344455555556665555544
No 57
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=92.55 E-value=0.23 Score=50.52 Aligned_cols=85 Identities=19% Similarity=0.307 Sum_probs=57.7
Q ss_pred cEEEeeCCCCCCchhHHHHHhcCceeEEEecccccCCCCCCCCCcEEEEEcCCChhhHHHHHhcC--CHHHHHHHHHHHH
Q 017299 253 KFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKGI--SSEEYLLLQNNVL 330 (374)
Q Consensus 253 ~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~iDw~~fsV~v~e~~v~~l~~~L~~i--~~~~i~~mq~~l~ 330 (374)
..++.|.-......-+.|||.+|| |||.++.= ...++++=.+-.+.++..|..++-+.+..+ +++...+|.++.+
T Consensus 342 Dv~v~pS~~E~fg~~~lEAma~G~-PvV~s~~g--g~~eiv~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a~ 418 (439)
T TIGR02472 342 GIFVNPALTEPFGLTLLEAAACGL-PIVATDDG--GPRDIIANCRNGLLVDVLDLEAIASALEDALSDSSQWQLWSRNGI 418 (439)
T ss_pred CEEecccccCCcccHHHHHHHhCC-CEEEeCCC--CcHHHhcCCCcEEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 444555544445677999999999 99999842 234555445567788988887766665544 4666777777665
Q ss_pred -hhhccceecc
Q 017299 331 -KVRKHFQWHV 340 (374)
Q Consensus 331 -~v~~~f~y~~ 340 (374)
++.++|.|+.
T Consensus 419 ~~~~~~fsw~~ 429 (439)
T TIGR02472 419 EGVRRHYSWDA 429 (439)
T ss_pred HHHHHhCCHHH
Confidence 4667777765
No 58
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=92.46 E-value=0.14 Score=42.38 Aligned_cols=74 Identities=16% Similarity=0.176 Sum_probs=42.7
Q ss_pred ccCcccchHHhhhcCCcEEEeeCC-CCCCchhHHHHHhcCceeEEEecccccCCCCCCCCCcEEEEEcCCChhhHHHHHh
Q 017299 237 HSGRLKTPYADGLLGSKFCLHVKG-FEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILK 315 (374)
Q Consensus 237 ~~g~~~~~y~~~l~~S~FCL~p~G-~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~iDw~~fsV~v~e~~v~~l~~~L~ 315 (374)
..|.. .++.+.++++..+++|.- +...+..++|++.+|| |||.++. ++.+.+.-....+.+ .++..++.+.|.
T Consensus 57 ~~g~~-~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~-pvi~~~~---~~~~~~~~~~~~~~~-~~~~~~l~~~i~ 130 (135)
T PF13692_consen 57 FHGFV-EELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGK-PVIASDN---GAEGIVEEDGCGVLV-ANDPEELAEAIE 130 (135)
T ss_dssp EE-S--HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT---EEEEHH---HCHCHS---SEEEE--TT-HHHHHHHHH
T ss_pred EcCCH-HHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCC-CEEECCc---chhhheeecCCeEEE-CCCHHHHHHHHH
Confidence 33443 378889999999999874 2235689999999997 4555665 444444435666666 667776666654
Q ss_pred c
Q 017299 316 G 316 (374)
Q Consensus 316 ~ 316 (374)
.
T Consensus 131 ~ 131 (135)
T PF13692_consen 131 R 131 (135)
T ss_dssp H
T ss_pred H
Confidence 3
No 59
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=92.15 E-value=2.7 Score=43.78 Aligned_cols=93 Identities=11% Similarity=0.071 Sum_probs=55.9
Q ss_pred hHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEecc-cccCCCCCCCCCcEEEEEcC----CC----hhhHHHHH
Q 017299 244 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANH-YDLPFADILNWKSFSIVVAT----LD----IPLLKKIL 314 (374)
Q Consensus 244 ~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~-~~lPF~~~iDw~~fsV~v~e----~~----v~~l~~~L 314 (374)
+..+.++.+.-++.|.=....+.-+.|||.+|| |||.+|- +-. .++|.=..-.+.++. .+ +.+|-+.+
T Consensus 385 ~~~~~~~~adv~v~pS~~Egfgl~~lEAma~G~-PVI~~dv~~G~--~eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I 461 (500)
T TIGR02918 385 NLSEVYKDYELYLSASTSEGFGLTLMEAVGSGL-GMIGFDVNYGN--PTFIEDNKNGYLIPIDEEEDDEDQIITALAEKI 461 (500)
T ss_pred CHHHHHHhCCEEEEcCccccccHHHHHHHHhCC-CEEEecCCCCC--HHHccCCCCEEEEeCCccccchhHHHHHHHHHH
Confidence 455677778777666644456778999999996 7777762 221 233433334445552 22 33333332
Q ss_pred hc-CCHHHHHHHHHHHHhhhccceec
Q 017299 315 KG-ISSEEYLLLQNNVLKVRKHFQWH 339 (374)
Q Consensus 315 ~~-i~~~~i~~mq~~l~~v~~~f~y~ 339 (374)
.. +.+++..+|.++..+..+.|.|.
T Consensus 462 ~~ll~~~~~~~~~~~a~~~a~~fs~~ 487 (500)
T TIGR02918 462 VEYFNSNDIDAFHEYSYQIAEGFLTA 487 (500)
T ss_pred HHHhChHHHHHHHHHHHHHHHhcCHH
Confidence 22 24667888988888777776443
No 60
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=91.26 E-value=1.5 Score=46.21 Aligned_cols=64 Identities=13% Similarity=0.034 Sum_probs=45.8
Q ss_pred hHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEecccccCCCCCCCCCcEEEEEcCCChhhH
Q 017299 244 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLL 310 (374)
Q Consensus 244 ~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~iDw~~fsV~v~e~~v~~l 310 (374)
+..+.|+.+..++.|.-......-++|||.+|| |||.++.--. .+.|.=..-.+.++..|...+
T Consensus 465 Dv~~~LaaADVfVlPS~~EGfp~vlLEAMA~Gl-PVVATdvGG~--~EiV~dG~nG~LVp~~D~~aL 528 (578)
T PRK15490 465 DVGYWLQKMNVFILFSRYEGLPNVLIEAQMVGV-PVISTPAGGS--AECFIEGVSGFILDDAQTVNL 528 (578)
T ss_pred hHHHHHHhCCEEEEcccccCccHHHHHHHHhCC-CEEEeCCCCc--HHHcccCCcEEEECCCChhhH
Confidence 566778889988888666667789999999998 9999884322 244444455667787775443
No 61
>KOG2619 consensus Fucosyltransferase [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=91.12 E-value=1.5 Score=43.75 Aligned_cols=143 Identities=19% Similarity=0.149 Sum_probs=84.3
Q ss_pred cCCcccCCccccCCcCCCC-C----CCCCCC--CCCCceEEEEeccC-CchHHHHHHHHHhcCCCceeccCccc------
Q 017299 177 ISGHIAHKDVSLPQIWPRQ-E----DPPKLG--SSKRNKLAFFAGAV-NSPVREKLLQVWRNDSEIYAHSGRLK------ 242 (374)
Q Consensus 177 ~~~frp~kDv~iP~~~~~~-~----~~~~~~--~~~R~~l~~F~G~~-~~~~R~~L~~~~~~~~~~~~~~g~~~------ 242 (374)
..+||-+.|+-.|+-.-.. + ..+..+ ..+++..+.+.... ...-|-.+++.+... -.+-+.|.|.
T Consensus 160 T~Tyr~dSd~~~pygy~~~~~~~~~~~p~~~~~~~k~~~~aw~vSnc~~~~~R~~~~~~L~k~-l~iD~YG~c~~~~~~~ 238 (372)
T KOG2619|consen 160 TMTYRRDSDLFVPYGYLEKPEANPVLVPVNSILSAKTKLAAWLVSNCIPRSARLDYYKELMKH-LEIDSYGECLRKNANR 238 (372)
T ss_pred eEEEeccCCCCCccceEeecccCceecccccccccccceeeeeccccCcchHHHHHHHHHHhh-CceeeccccccccccC
Confidence 3467777777777532111 0 111111 33444555555543 345676666666544 1222344442
Q ss_pred ---chHHhhhcCCcEEEeeCCC---CCCchhHHHHHhcCceeEEEecccccCCCCCCCCCcEEEEEcC-CChhhHHHHHh
Q 017299 243 ---TPYADGLLGSKFCLHVKGF---EVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVAT-LDIPLLKKILK 315 (374)
Q Consensus 243 ---~~y~~~l~~S~FCL~p~G~---~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~iDw~~fsV~v~e-~~v~~l~~~L~ 315 (374)
....+.+..-||-|+-... ..-+..|+.|+.+|.|||+++......| ++ ++.-|.|.. ..+.+|...|+
T Consensus 239 ~~~~~~~~~~s~YKFyLAfENS~c~DYVTEKfw~al~~gsVPVvlg~~n~e~f---vP-~~SfI~vdDF~s~~ela~ylk 314 (372)
T KOG2619|consen 239 DPSDCLLETLSHYKFYLAFENSNCEDYVTEKFWNALDAGSVPVVLGPPNYENF---VP-PDSFIHVDDFQSPQELAAYLK 314 (372)
T ss_pred CCCCcceeecccceEEEEecccCCcccccHHHHhhhhcCcccEEECCcccccc---CC-CcceEehhhcCCHHHHHHHHH
Confidence 2566788899999975432 2347889999999999999999655444 44 444455544 34567888888
Q ss_pred cCC--HHHHHH
Q 017299 316 GIS--SEEYLL 324 (374)
Q Consensus 316 ~i~--~~~i~~ 324 (374)
.+. ++.+.+
T Consensus 315 ~L~~n~~~Y~~ 325 (372)
T KOG2619|consen 315 KLDKNPAAYLS 325 (372)
T ss_pred HhhcCHHHHHH
Confidence 884 444433
No 62
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=91.00 E-value=0.49 Score=45.47 Aligned_cols=92 Identities=13% Similarity=0.021 Sum_probs=63.0
Q ss_pred hHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEecccccCCCCCCCCCcEEEEEcCCChhhHHHHHhcC--CHHH
Q 017299 244 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKGI--SSEE 321 (374)
Q Consensus 244 ~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~iDw~~fsV~v~e~~v~~l~~~L~~i--~~~~ 321 (374)
...+.|+.|.+++.|......+.-++|||.+||- ||.++. -+..+.+.=....+.++..+..++.+.|..+ .+++
T Consensus 257 ~~~~~~~~ad~~l~ps~~e~~g~~~~Eam~~g~P-vI~~~~--~~~~e~~~~~~~g~~~~~~~~~~~~~~l~~l~~~~~~ 333 (365)
T cd03825 257 SLALIYSAADVFVVPSLQENFPNTAIEALACGTP-VVAFDV--GGIPDIVDHGVTGYLAKPGDPEDLAEGIEWLLADPDE 333 (365)
T ss_pred HHHHHHHhCCEEEeccccccccHHHHHHHhcCCC-EEEecC--CCChhheeCCCceEEeCCCCHHHHHHHHHHHHhCHHH
Confidence 4567899999999998776678889999999975 666663 2344455434566778877776665555443 4666
Q ss_pred HHHHHHHHHhh-hcccee
Q 017299 322 YLLLQNNVLKV-RKHFQW 338 (374)
Q Consensus 322 i~~mq~~l~~v-~~~f~y 338 (374)
..+|.++.+.. .+.|.|
T Consensus 334 ~~~~~~~~~~~~~~~~s~ 351 (365)
T cd03825 334 REELGEAARELAENEFDS 351 (365)
T ss_pred HHHHHHHHHHHHHHhcCH
Confidence 77887776653 344433
No 63
>PHA01633 putative glycosyl transferase group 1
Probab=90.51 E-value=0.5 Score=46.67 Aligned_cols=40 Identities=20% Similarity=0.083 Sum_probs=33.7
Q ss_pred hHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEecc
Q 017299 244 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANH 284 (374)
Q Consensus 244 ~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~ 284 (374)
+..+.++.|.+.+.|.-......-+.|||++|| |||.++-
T Consensus 216 dl~~~y~~aDifV~PS~~EgfGlvlLEAMA~G~-PVVas~~ 255 (335)
T PHA01633 216 YIFAFYGAMDFTIVPSGTEGFGMPVLESMAMGT-PVIHQLM 255 (335)
T ss_pred HHHHHHHhCCEEEECCccccCCHHHHHHHHcCC-CEEEccC
Confidence 456788999988888766667788999999999 9998874
No 64
>PHA01630 putative group 1 glycosyl transferase
Probab=89.44 E-value=0.82 Score=44.95 Aligned_cols=39 Identities=10% Similarity=0.070 Sum_probs=30.8
Q ss_pred hHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEec
Q 017299 244 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIAN 283 (374)
Q Consensus 244 ~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d 283 (374)
+..+.++.+..++.|.-......-+.|||++|| |||.+|
T Consensus 202 ~l~~~y~~aDv~v~pS~~E~fgl~~lEAMA~G~-PVIas~ 240 (331)
T PHA01630 202 DIYSLFAGCDILFYPVRGGAFEIPVIEALALGL-DVVVTE 240 (331)
T ss_pred HHHHHHHhCCEEEECCccccCChHHHHHHHcCC-CEEEeC
Confidence 566789999999888665555677999999997 667666
No 65
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=88.47 E-value=5.9 Score=39.38 Aligned_cols=78 Identities=19% Similarity=0.285 Sum_probs=48.9
Q ss_pred hHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEecccccCCCCC------CCCCcEEEEEcCCChhhHHHHHhcC
Q 017299 244 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADI------LNWKSFSIVVATLDIPLLKKILKGI 317 (374)
Q Consensus 244 ~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~------iDw~~fsV~v~e~~v~~l~~~L~~i 317 (374)
+..+.|+.|...+.+.|. .-+.|||.+|| |||+.+. .|-+++ ++ ....+.+ .+...|.+.+..+
T Consensus 275 ~~~~l~~aaDv~V~~~g~----~ti~EAma~g~-PvI~~~~--~pgqe~gn~~~i~~-~g~g~~~--~~~~~la~~i~~l 344 (382)
T PLN02605 275 NMEEWMGACDCIITKAGP----GTIAEALIRGL-PIILNGY--IPGQEEGNVPYVVD-NGFGAFS--ESPKEIARIVAEW 344 (382)
T ss_pred cHHHHHHhCCEEEECCCc----chHHHHHHcCC-CEEEecC--CCccchhhHHHHHh-CCceeec--CCHHHHHHHHHHH
Confidence 677889999988887662 24899999996 7777763 233332 22 3444443 4555554444433
Q ss_pred --C-HHHHHHHHHHHHh
Q 017299 318 --S-SEEYLLLQNNVLK 331 (374)
Q Consensus 318 --~-~~~i~~mq~~l~~ 331 (374)
. ++...+|+++.++
T Consensus 345 l~~~~~~~~~m~~~~~~ 361 (382)
T PLN02605 345 FGDKSDELEAMSENALK 361 (382)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 2 6677778777544
No 66
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=88.27 E-value=2.2 Score=48.17 Aligned_cols=86 Identities=15% Similarity=0.145 Sum_probs=60.7
Q ss_pred EEEeeCCCCCCchhHHHHHhcCceeEEEecccccCCCCCCCCCcEEEEEcCCChhhHHHHHhcC--CHHHHHHHHHHHHh
Q 017299 254 FCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKGI--SSEEYLLLQNNVLK 331 (374)
Q Consensus 254 FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~iDw~~fsV~v~e~~v~~l~~~L~~i--~~~~i~~mq~~l~~ 331 (374)
.++.|.=..+...-+.|||++| +|||.++.- ...++|.-..-.+.|+..+...|-+.|..+ .++...+|.++.++
T Consensus 574 VFV~PS~~EgFGLvlLEAMAcG-lPVVASdvG--G~~EII~~g~nGlLVdP~D~eaLA~AL~~LL~Dpelr~~m~~~gr~ 650 (1050)
T TIGR02468 574 VFINPAFIEPFGLTLIEAAAHG-LPMVATKNG--GPVDIHRVLDNGLLVDPHDQQAIADALLKLVADKQLWAECRQNGLK 650 (1050)
T ss_pred eeeCCcccCCCCHHHHHHHHhC-CCEEEeCCC--CcHHHhccCCcEEEECCCCHHHHHHHHHHHhhCHHHHHHHHHHHHH
Confidence 4555655556678899999999 599999842 334555555667888998888776666554 46778889888776
Q ss_pred hhccceeccCC
Q 017299 332 VRKHFQWHVFP 342 (374)
Q Consensus 332 v~~~f~y~~~~ 342 (374)
..+.|.|....
T Consensus 651 ~v~~FSWe~ia 661 (1050)
T TIGR02468 651 NIHLFSWPEHC 661 (1050)
T ss_pred HHHHCCHHHHH
Confidence 55667676643
No 67
>PLN02939 transferase, transferring glycosyl groups
Probab=87.93 E-value=2.2 Score=47.66 Aligned_cols=94 Identities=18% Similarity=0.217 Sum_probs=61.9
Q ss_pred hhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEecccccCCCCCCCCC--------cEEEEEcCCChhhHHHHHhc--
Q 017299 247 DGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWK--------SFSIVVATLDIPLLKKILKG-- 316 (374)
Q Consensus 247 ~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~iDw~--------~fsV~v~e~~v~~l~~~L~~-- 316 (374)
..++.|.++++|.=..+...-+.|||++||+||+...+= ++ +-+.|++ .-.+.++..+...+.+.|..
T Consensus 852 ~IYAaADIFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGG-L~-DtV~d~d~e~i~~eg~NGfLf~~~D~eaLa~AL~rAL 929 (977)
T PLN02939 852 SIYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGG-LN-DSVFDFDDETIPVELRNGFTFLTPDEQGLNSALERAF 929 (977)
T ss_pred HHHHhCCEEEECCCccCCcHHHHHHHHCCCCEEEecCCC-Cc-ceeecCCccccccCCCceEEecCCCHHHHHHHHHHHH
Confidence 578899999999877788888999999999998754321 11 1122332 23566777777665544432
Q ss_pred --C--CHHHHHHHHHHHHhhhccceeccCCCC
Q 017299 317 --I--SSEEYLLLQNNVLKVRKHFQWHVFPSD 344 (374)
Q Consensus 317 --i--~~~~i~~mq~~l~~v~~~f~y~~~~~~ 344 (374)
+ .++.+.+|+++. +...|.|......
T Consensus 930 ~~~~~dpe~~~~L~~~a--m~~dFSWe~~A~q 959 (977)
T PLN02939 930 NYYKRKPEVWKQLVQKD--MNIDFSWDSSASQ 959 (977)
T ss_pred HHhccCHHHHHHHHHHH--HHhcCCHHHHHHH
Confidence 2 477788887653 4466767664433
No 68
>PLN02316 synthase/transferase
Probab=86.54 E-value=4.6 Score=45.63 Aligned_cols=97 Identities=18% Similarity=0.207 Sum_probs=59.5
Q ss_pred hhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEecccccCCCCCCCCC------------cEEEEEcCCChhhHHHHH
Q 017299 247 DGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWK------------SFSIVVATLDIPLLKKIL 314 (374)
Q Consensus 247 ~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~iDw~------------~fsV~v~e~~v~~l~~~L 314 (374)
..++.|.+.|+|.=..+...-..|||++||+||+-..+ =+| +-+.|++ .-.+.++..+...|...|
T Consensus 915 ~iyaaADiflmPS~~EP~GLvqLEAMa~GtppVvs~vG-GL~-DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL 992 (1036)
T PLN02316 915 LIYAGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTG-GLF-DTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYAL 992 (1036)
T ss_pred HHHHhCcEEEeCCcccCccHHHHHHHHcCCCeEEEcCC-CcH-hhccccccccccccccccCCceEEeCCCCHHHHHHHH
Confidence 57889999999987888889999999999999995432 111 1123442 346778888776544443
Q ss_pred hc-CC--HHHHHHHHHHHH-hhhccceeccCCCCc
Q 017299 315 KG-IS--SEEYLLLQNNVL-KVRKHFQWHVFPSDY 345 (374)
Q Consensus 315 ~~-i~--~~~i~~mq~~l~-~v~~~f~y~~~~~~~ 345 (374)
.. +. .+.-..|++..+ .+.+.|.|......|
T Consensus 993 ~raL~~~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y 1027 (1036)
T PLN02316 993 NRAISAWYDGRDWFNSLCKRVMEQDWSWNRPALDY 1027 (1036)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 22 21 122222333333 245678777655433
No 69
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=83.20 E-value=2.1 Score=45.27 Aligned_cols=99 Identities=14% Similarity=0.260 Sum_probs=64.5
Q ss_pred chHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEecccccC--CCCCC-CCCcEEEEEcC-------CChhhHHH
Q 017299 243 TPYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLP--FADIL-NWKSFSIVVAT-------LDIPLLKK 312 (374)
Q Consensus 243 ~~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~~lP--F~~~i-Dw~~fsV~v~e-------~~v~~l~~ 312 (374)
..|.+.++.+.-++.|.-+.+++.-..||+++| +|||.++.--++ -.+++ +-....|.|.. +.+.+|.+
T Consensus 466 ~~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G-~PvI~t~~~gf~~~v~E~v~~~~~~gi~V~~r~~~~~~e~v~~La~ 544 (590)
T cd03793 466 LDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMG-IPSITTNLSGFGCFMEEHIEDPESYGIYIVDRRFKSPDESVQQLTQ 544 (590)
T ss_pred cchHHHhhhceEEEeccccCCCCcHHHHHHHcC-CCEEEccCcchhhhhHHHhccCCCceEEEecCCccchHHHHHHHHH
Confidence 379999999999999988888888999999999 699999864331 01233 33355677653 22344444
Q ss_pred HHhcC---CHHHHHHHHHHHHhhhccceeccCC
Q 017299 313 ILKGI---SSEEYLLLQNNVLKVRKHFQWHVFP 342 (374)
Q Consensus 313 ~L~~i---~~~~i~~mq~~l~~v~~~f~y~~~~ 342 (374)
.|..+ +..+....|....+....|.|+.-.
T Consensus 545 ~m~~~~~~~~r~~~~~r~~~~r~s~~f~W~~~~ 577 (590)
T cd03793 545 YMYEFCQLSRRQRIIQRNRTERLSDLLDWRNLG 577 (590)
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 44443 3333333333334778888888754
No 70
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=80.88 E-value=2.2 Score=34.32 Aligned_cols=33 Identities=21% Similarity=0.484 Sum_probs=23.3
Q ss_pred CCCCCchhHHHHHHHHhcCCc-cCCCCCCccEEEE
Q 017299 66 EPRGNYASESYFKKVFMKSHF-VTKDPSKADLFFL 99 (374)
Q Consensus 66 ~~~~~y~~E~~~~~~L~~S~~-rT~dP~eAdlF~v 99 (374)
|..+++.+|.+ ...|.+.+| .|++|++||+++|
T Consensus 9 C~~N~~Dse~i-~~~l~~~G~~~~~~~e~AD~iii 42 (98)
T PF00919_consen 9 CQMNQYDSERI-ASILQAAGYEIVDDPEEADVIII 42 (98)
T ss_pred CcccHHHHHHH-HHHHHhcCCeeecccccCCEEEE
Confidence 55566666654 344545554 6999999999998
No 71
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=80.50 E-value=3.3 Score=39.99 Aligned_cols=83 Identities=13% Similarity=0.117 Sum_probs=51.5
Q ss_pred hHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEecccccCCC-----CCCCCCcEEEEEcCCC--hhhHHHHHhc
Q 017299 244 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFA-----DILNWKSFSIVVATLD--IPLLKKILKG 316 (374)
Q Consensus 244 ~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~-----~~iDw~~fsV~v~e~~--v~~l~~~L~~ 316 (374)
++.+.|..|..++.+.| +.-++||+.+|+ |||+.+.-.-+-+ +.+.-....+.++..+ ..+|.+.|+.
T Consensus 243 ~~~~~l~~ad~~v~~~g----~~~l~Ea~~~g~-Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ 317 (348)
T TIGR01133 243 NMAAAYAAADLVISRAG----ASTVAELAAAGV-PAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLK 317 (348)
T ss_pred CHHHHHHhCCEEEECCC----hhHHHHHHHcCC-CEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHH
Confidence 67888999999998766 246899999995 7777642100000 1233355566676655 5555555443
Q ss_pred C--CHHHHHHHHHHHHh
Q 017299 317 I--SSEEYLLLQNNVLK 331 (374)
Q Consensus 317 i--~~~~i~~mq~~l~~ 331 (374)
+ +++...+|.++.++
T Consensus 318 ll~~~~~~~~~~~~~~~ 334 (348)
T TIGR01133 318 LLLDPANLEAMAEAARK 334 (348)
T ss_pred HHcCHHHHHHHHHHHHh
Confidence 3 46667777776643
No 72
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=79.29 E-value=16 Score=36.43 Aligned_cols=82 Identities=17% Similarity=0.200 Sum_probs=51.3
Q ss_pred hHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEecccccCCCCCCC-----CCcEEEEEcCCChhhHHHHHhcC-
Q 017299 244 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILN-----WKSFSIVVATLDIPLLKKILKGI- 317 (374)
Q Consensus 244 ~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~iD-----w~~fsV~v~e~~v~~l~~~L~~i- 317 (374)
+..+.|+.|..++..+|. .-+.||+.+| +|||+.+.. |=++..+ =..+++.+. +..++.+.|..+
T Consensus 266 ~~~~~~~~aDl~I~k~gg----~tl~EA~a~G-~PvI~~~~~--pgqe~~N~~~~~~~G~g~~~~--~~~~l~~~i~~ll 336 (391)
T PRK13608 266 HMNEWMASSQLMITKPGG----ITISEGLARC-IPMIFLNPA--PGQELENALYFEEKGFGKIAD--TPEEAIKIVASLT 336 (391)
T ss_pred hHHHHHHhhhEEEeCCch----HHHHHHHHhC-CCEEECCCC--CCcchhHHHHHHhCCcEEEeC--CHHHHHHHHHHHh
Confidence 667889999998875442 3489999999 588887642 3333221 223444432 444444444433
Q ss_pred -CHHHHHHHHHHHHhhhc
Q 017299 318 -SSEEYLLLQNNVLKVRK 334 (374)
Q Consensus 318 -~~~~i~~mq~~l~~v~~ 334 (374)
.++.+.+|+++..+..+
T Consensus 337 ~~~~~~~~m~~~~~~~~~ 354 (391)
T PRK13608 337 NGNEQLTNMISTMEQDKI 354 (391)
T ss_pred cCHHHHHHHHHHHHHhcC
Confidence 57888899988776544
No 73
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=76.68 E-value=11 Score=37.53 Aligned_cols=91 Identities=19% Similarity=0.228 Sum_probs=55.3
Q ss_pred hHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEecccccCCCC-CCCCCcE-EEEEcCCChhhHHHHHhc--CCH
Q 017299 244 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFAD-ILNWKSF-SIVVATLDIPLLKKILKG--ISS 319 (374)
Q Consensus 244 ~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~-~iDw~~f-sV~v~e~~v~~l~~~L~~--i~~ 319 (374)
+..+.+.++++.+.-.=+.-.....+|+|++|.|||.=..+ =|--| +++|+-- .=++.+++..-...+|+- .+.
T Consensus 349 ~lv~lL~~a~iGvh~MwNEHFGIsVVEyMAAGlIpi~h~Sg--GP~lDIV~~~~G~~tGFla~t~~EYaE~iLkIv~~~~ 426 (465)
T KOG1387|consen 349 KLVELLGKATIGVHTMWNEHFGISVVEYMAAGLIPIVHNSG--GPLLDIVTPWDGETTGFLAPTDEEYAEAILKIVKLNY 426 (465)
T ss_pred HHHHHhccceeehhhhhhhhcchhHHHHHhcCceEEEeCCC--CCceeeeeccCCccceeecCChHHHHHHHHHHHHcCH
Confidence 66788999999988665555678899999999999875542 12122 2344321 123334444434444433 356
Q ss_pred HHHHHHHHHHHhhhccc
Q 017299 320 EEYLLLQNNVLKVRKHF 336 (374)
Q Consensus 320 ~~i~~mq~~l~~v~~~f 336 (374)
++...||++-+.--.+|
T Consensus 427 ~~r~~~r~~AR~s~~RF 443 (465)
T KOG1387|consen 427 DERNMMRRNARKSLARF 443 (465)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 66778888766544444
No 74
>PLN00142 sucrose synthase
Probab=76.06 E-value=6.2 Score=43.53 Aligned_cols=87 Identities=7% Similarity=0.114 Sum_probs=58.5
Q ss_pred cEEEeeCCCCCCchhHHHHHhcCceeEEEecccccCCCCCCCCCcEEEEEcCCChhhHHHHHh----c--CCHHHHHHHH
Q 017299 253 KFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILK----G--ISSEEYLLLQ 326 (374)
Q Consensus 253 ~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~iDw~~fsV~v~e~~v~~l~~~L~----~--i~~~~i~~mq 326 (374)
..+++|.-..+...-+.|||++|| |||.++.=-+ .++|.=..-.+.|+..+...+-+.|. . -+++...+|.
T Consensus 668 DVfVlPS~~EgFGLvvLEAMA~Gl-PVVATdvGG~--~EIV~dG~tG~LV~P~D~eaLA~aI~~lLekLl~Dp~lr~~mg 744 (815)
T PLN00142 668 GAFVQPALYEAFGLTVVEAMTCGL-PTFATCQGGP--AEIIVDGVSGFHIDPYHGDEAANKIADFFEKCKEDPSYWNKIS 744 (815)
T ss_pred CEEEeCCcccCCCHHHHHHHHcCC-CEEEcCCCCH--HHHhcCCCcEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 445567656666788999999996 7787774222 23444456677888888776554443 2 1577788888
Q ss_pred HHH-HhhhccceeccCC
Q 017299 327 NNV-LKVRKHFQWHVFP 342 (374)
Q Consensus 327 ~~l-~~v~~~f~y~~~~ 342 (374)
++. +++.++|.|....
T Consensus 745 ~~Ar~rv~e~FSWe~~A 761 (815)
T PLN00142 745 DAGLQRIYECYTWKIYA 761 (815)
T ss_pred HHHHHHHHHhCCHHHHH
Confidence 775 4577889887754
No 75
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=75.67 E-value=14 Score=32.16 Aligned_cols=76 Identities=18% Similarity=0.069 Sum_probs=45.2
Q ss_pred ceEEEEeccCCch-HHHHHHHHHhcCCCceeccCcc--cchHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEec
Q 017299 207 NKLAFFAGAVNSP-VREKLLQVWRNDSEIYAHSGRL--KTPYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIAN 283 (374)
Q Consensus 207 ~~l~~F~G~~~~~-~R~~L~~~~~~~~~~~~~~g~~--~~~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d 283 (374)
+.-+.+.|..... ..+.+...... .+.+...|.. .......++.|..+++|......+..++|||.+|| |||.++
T Consensus 135 ~~~~~i~G~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~di~l~~~~~e~~~~~~~Eam~~g~-pvi~s~ 212 (229)
T cd01635 135 DLKLVIAGDGPEREYLEELLAALLL-LDRVIFLGGLDPEELLALLLAAADVFVLPSLREGFGLVVLEAMACGL-PVIATD 212 (229)
T ss_pred CeEEEEEeCCCChHHHHHHHHhcCC-cccEEEeCCCCcHHHHHHHhhcCCEEEecccccCcChHHHHHHhCCC-CEEEcC
Confidence 5667777764332 22221222221 2223333432 23555556669999999987778899999999986 455565
Q ss_pred c
Q 017299 284 H 284 (374)
Q Consensus 284 ~ 284 (374)
.
T Consensus 213 ~ 213 (229)
T cd01635 213 V 213 (229)
T ss_pred C
Confidence 3
No 76
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=74.46 E-value=3.3 Score=40.94 Aligned_cols=66 Identities=11% Similarity=0.172 Sum_probs=41.3
Q ss_pred hHHhhhcCCcEEEeeCCCC-----CCchhHHHHHhcCceeEEEecccccCCCCCCCCCcEEEEEcCCChhhHHHHHhc
Q 017299 244 PYADGLLGSKFCLHVKGFE-----VNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKG 316 (374)
Q Consensus 244 ~y~~~l~~S~FCL~p~G~~-----~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~iDw~~fsV~v~e~~v~~l~~~L~~ 316 (374)
+..+.++.+..|+.|--.. .....++|+|++|+ |||.++ +.++.+...-.+.+ ..+..++.+.|..
T Consensus 266 ~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~-PVVat~-----~~~~~~~~~~~~~~-~~d~~~~~~ai~~ 336 (373)
T cd04950 266 ELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGK-PVVATP-----LPEVRRYEDEVVLI-ADDPEEFVAAIEK 336 (373)
T ss_pred HHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCC-CEEecC-----cHHHHhhcCcEEEe-CCCHHHHHHHHHH
Confidence 6777899999999985322 22457999999995 787654 23333333333333 4466655555544
No 77
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=73.31 E-value=21 Score=38.86 Aligned_cols=92 Identities=11% Similarity=0.051 Sum_probs=54.5
Q ss_pred hHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEecccccCCCCCCCCCcEEEEEcCCCh------hhHHHHHhcC
Q 017299 244 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDI------PLLKKILKGI 317 (374)
Q Consensus 244 ~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~iDw~~fsV~v~e~~v------~~l~~~L~~i 317 (374)
+....|+.+...+.|.-......-++|||.+|| |||.++.-- ..++|.=..-.+.++..+. ..|.++|...
T Consensus 584 dv~~ll~aaDv~VlpS~~Egfp~vlLEAMA~G~-PVVat~~gG--~~EiV~dg~~GlLv~~~d~~~~~La~aL~~ll~~l 660 (694)
T PRK15179 584 RVGYWLTQFNAFLLLSRFEGLPNVLIEAQFSGV-PVVTTLAGG--AGEAVQEGVTGLTLPADTVTAPDVAEALARIHDMC 660 (694)
T ss_pred hHHHHHHhcCEEEeccccccchHHHHHHHHcCC-eEEEECCCC--hHHHccCCCCEEEeCCCCCChHHHHHHHHHHHhCh
Confidence 566778888877777555556789999999995 788887422 2344443455667776654 2344444433
Q ss_pred CHHHHHHHHHHHH-hhhccceecc
Q 017299 318 SSEEYLLLQNNVL-KVRKHFQWHV 340 (374)
Q Consensus 318 ~~~~i~~mq~~l~-~v~~~f~y~~ 340 (374)
.. -.+|+++.+ .+.+.|.|+.
T Consensus 661 ~~--~~~l~~~ar~~a~~~FS~~~ 682 (694)
T PRK15179 661 AA--DPGIARKAADWASARFSLNQ 682 (694)
T ss_pred hc--cHHHHHHHHHHHHHhCCHHH
Confidence 21 224445444 3456665543
No 78
>smart00672 CAP10 Putative lipopolysaccharide-modifying enzyme.
Probab=71.60 E-value=31 Score=32.72 Aligned_cols=128 Identities=13% Similarity=0.159 Sum_probs=80.0
Q ss_pred CCCCCCceEEEEeccCCch-HHHHHHHHHhcCCCce---ec--c--Cccc---------chHHhhhcCCcEEEeeCCCCC
Q 017299 201 LGSSKRNKLAFFAGAVNSP-VREKLLQVWRNDSEIY---AH--S--GRLK---------TPYADGLLGSKFCLHVKGFEV 263 (374)
Q Consensus 201 ~~~~~R~~l~~F~G~~~~~-~R~~L~~~~~~~~~~~---~~--~--g~~~---------~~y~~~l~~S~FCL~p~G~~~ 263 (374)
.+-..|.-.++|+|+.++. .|+.|++...+.++.+ +. + +.|+ ..-.+...+.||=|...|.+
T Consensus 78 ~pW~~K~~~a~WRG~~~~~~~R~~Lv~~~~~~p~~~da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yKyli~~dG~~- 156 (256)
T smart00672 78 TKWSDKNAYAYWRGNPTVASERLDLIKCNQSSPELVNARITIQDWPGKCDGEEDAPGFKKSPLEEQCKHKYKINIEGVA- 156 (256)
T ss_pred CCccccCcCccccCCCCCCcchHHHHHHhcCCcccceeEEEEecCCCCChHHhcccCcCCCCHHHHhhcceEEecCCcc-
Confidence 3556788899999997766 8999998876654321 11 1 1111 11234556789999999987
Q ss_pred CchhHHHHHhcCceeEEEecccccCCCC-CCCCCcEEEEEcC--CC--hhhHHHHHhcCCHHHHHHHHHHHHh
Q 017299 264 NTARIADSLYYGCVPVIIANHYDLPFAD-ILNWKSFSIVVAT--LD--IPLLKKILKGISSEEYLLLQNNVLK 331 (374)
Q Consensus 264 ~s~Rl~dAi~~GCIPVii~d~~~lPF~~-~iDw~~fsV~v~e--~~--v~~l~~~L~~i~~~~i~~mq~~l~~ 331 (374)
.|.||.--|.+|+|++.....+..=|.+ ..+|.-|. -|.. ++ +.+..+.+++- +++..++-++.++
T Consensus 157 ~S~rl~~~l~~~Svvl~~~~~~~~~~~~~L~P~~HYv-Pv~~d~sd~~l~~~i~~~~~~-~~~a~~Ia~~~~~ 227 (256)
T smart00672 157 WSVRLKYILACDSVVLKVKPEYYEFFSRGLQPWVHYW-PIKSDLSCRELKEAVDWGNEH-DKKAQEIGKRGSE 227 (256)
T ss_pred chhhHHHHHhcCceEEEeCCchhHHHHhcccCccceE-EeeCCCchhhHHHHHHHHHhC-HHHHHHHHHHHHH
Confidence 5789999999999998888654333333 24566653 3332 23 66666656553 4444444444443
No 79
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=70.73 E-value=29 Score=31.64 Aligned_cols=46 Identities=17% Similarity=0.132 Sum_probs=32.2
Q ss_pred cCccc-chHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEecc
Q 017299 238 SGRLK-TPYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANH 284 (374)
Q Consensus 238 ~g~~~-~~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~ 284 (374)
.|..+ ....+.++.+...+.|.-......-+.||+.+| +|||.++.
T Consensus 262 ~g~~~~~~~~~~~~~~~~~v~ps~~e~~~~~~~Ea~a~g-~pvi~~~~ 308 (381)
T COG0438 262 LGYVPDEELAELLASADVFVLPSLSEGFGLVLLEAMAAG-TPVIASDV 308 (381)
T ss_pred ecccCHHHHHHHHHhCCEEEeccccccchHHHHHHHhcC-CcEEECCC
Confidence 45444 355667777889888853322334499999999 99988874
No 80
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=70.01 E-value=11 Score=41.39 Aligned_cols=87 Identities=6% Similarity=0.134 Sum_probs=59.8
Q ss_pred cEEEeeCCCCCCchhHHHHHhcCceeEEEecccccCCCCCCCCCcEEEEEcCCChhhHHHHHhcC------CHHHHHHHH
Q 017299 253 KFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKGI------SSEEYLLLQ 326 (374)
Q Consensus 253 ~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~iDw~~fsV~v~e~~v~~l~~~L~~i------~~~~i~~mq 326 (374)
..+++|.=..+...-+.|||++||- ||.++.=-+ .++|.=..-.+.|+..+...+-+.|..+ .++.+.+|.
T Consensus 645 dVfV~PS~~EpFGLvvLEAMAcGlP-VVAT~~GG~--~EiV~dg~tGfLVdp~D~eaLA~aL~~ll~kll~dp~~~~~ms 721 (784)
T TIGR02470 645 GIFVQPALYEAFGLTVLEAMTCGLP-TFATRFGGP--LEIIQDGVSGFHIDPYHGEEAAEKIVDFFEKCDEDPSYWQKIS 721 (784)
T ss_pred cEEEECCcccCCCHHHHHHHHcCCC-EEEcCCCCH--HHHhcCCCcEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4567777677778899999999975 555553111 2334335667788888887666555432 577888888
Q ss_pred HHHH-hhhccceeccCC
Q 017299 327 NNVL-KVRKHFQWHVFP 342 (374)
Q Consensus 327 ~~l~-~v~~~f~y~~~~ 342 (374)
++.+ ++.++|.|....
T Consensus 722 ~~a~~rV~~~FSW~~~A 738 (784)
T TIGR02470 722 QGGLQRIYEKYTWKIYS 738 (784)
T ss_pred HHHHHHHHHhCCHHHHH
Confidence 8754 578899988764
No 81
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=68.77 E-value=16 Score=35.16 Aligned_cols=82 Identities=11% Similarity=0.139 Sum_probs=51.6
Q ss_pred hHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEeccc-------ccCCCCCCCCCcEEEEEcCC--ChhhHHHHH
Q 017299 244 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHY-------DLPFADILNWKSFSIVVATL--DIPLLKKIL 314 (374)
Q Consensus 244 ~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~-------~lPF~~~iDw~~fsV~v~e~--~v~~l~~~L 314 (374)
+..+.|..+...+++.|. .-+.|||.+|+ |||+.+.- ..+.+.+.+ ....+.++.. +..+|.+.|
T Consensus 245 ~~~~~l~~ad~~v~~sg~----~t~~Eam~~G~-Pvv~~~~~~~~~~~~~~~~~~l~~-~g~g~~v~~~~~~~~~l~~~i 318 (350)
T cd03785 245 DMAAAYAAADLVISRAGA----STVAELAALGL-PAILIPLPYAADDHQTANARALVK-AGAAVLIPQEELTPERLAAAL 318 (350)
T ss_pred hHHHHHHhcCEEEECCCH----hHHHHHHHhCC-CEEEeecCCCCCCcHHHhHHHHHh-CCCEEEEecCCCCHHHHHHHH
Confidence 667788999988887662 34899999996 56554311 111122223 4566777765 666666665
Q ss_pred hcC--CHHHHHHHHHHHHh
Q 017299 315 KGI--SSEEYLLLQNNVLK 331 (374)
Q Consensus 315 ~~i--~~~~i~~mq~~l~~ 331 (374)
+.+ +++...+|+++.+.
T Consensus 319 ~~ll~~~~~~~~~~~~~~~ 337 (350)
T cd03785 319 LELLSDPERLKAMAEAARS 337 (350)
T ss_pred HHHhcCHHHHHHHHHHHHh
Confidence 544 46677777776543
No 82
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=67.69 E-value=8.9 Score=37.34 Aligned_cols=84 Identities=12% Similarity=0.097 Sum_probs=50.5
Q ss_pred hHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEecccccC-----CCCCCCCCcEEEEEcCCC--hhhHHHHHhc
Q 017299 244 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLP-----FADILNWKSFSIVVATLD--IPLLKKILKG 316 (374)
Q Consensus 244 ~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~~lP-----F~~~iDw~~fsV~v~e~~--v~~l~~~L~~ 316 (374)
++.+.|..|..+++..| +.-++||+.+|+--|++....... ..+.|--....+.++.++ ...|.+.++.
T Consensus 245 ~~~~~~~~~d~~i~~~g----~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ 320 (357)
T PRK00726 245 DMAAAYAAADLVICRAG----ASTVAELAAAGLPAILVPLPHAADDHQTANARALVDAGAALLIPQSDLTPEKLAEKLLE 320 (357)
T ss_pred hHHHHHHhCCEEEECCC----HHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHCCCEEEEEcccCCHHHHHHHHHH
Confidence 56788899999998765 245899999996444443211110 112222234577788776 4555555544
Q ss_pred C--CHHHHHHHHHHHHh
Q 017299 317 I--SSEEYLLLQNNVLK 331 (374)
Q Consensus 317 i--~~~~i~~mq~~l~~ 331 (374)
+ +++...+|+++.++
T Consensus 321 ll~~~~~~~~~~~~~~~ 337 (357)
T PRK00726 321 LLSDPERLEAMAEAARA 337 (357)
T ss_pred HHcCHHHHHHHHHHHHh
Confidence 3 36666778776543
No 83
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=67.62 E-value=58 Score=31.77 Aligned_cols=125 Identities=18% Similarity=0.195 Sum_probs=66.0
Q ss_pred EEEeccCCchHHHHHHHHHhcCCCceeccCccc-chHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEeccc-cc
Q 017299 210 AFFAGAVNSPVREKLLQVWRNDSEIYAHSGRLK-TPYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHY-DL 287 (374)
Q Consensus 210 ~~F~G~~~~~~R~~L~~~~~~~~~~~~~~g~~~-~~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~-~l 287 (374)
+.+.|.-+..++..+.+.++..+. +...|..+ .++...|+.+.+++.+.|. -+.||+.+|| |||..... ..
T Consensus 233 ~vi~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~l~~ad~vv~~Sg~-----~~~EA~a~g~-PvI~~~~~~~~ 305 (365)
T TIGR00236 233 IVYPVHLNPVVREPLHKHLGDSKR-VHLIEPLEYLDFLNLAANSHLILTDSGG-----VQEEAPSLGK-PVLVLRDTTER 305 (365)
T ss_pred EEEECCCChHHHHHHHHHhCCCCC-EEEECCCChHHHHHHHHhCCEEEECChh-----HHHHHHHcCC-CEEECCCCCCC
Confidence 444443334555555554433223 33334333 2677889999998877642 2799999995 77775322 22
Q ss_pred CCCCCCCCCcEEEEEcCCChhhHHHHHhcC--CHHHHHHHHHHHHhhhccceeccCCCCccHHHHHHHHH
Q 017299 288 PFADILNWKSFSIVVATLDIPLLKKILKGI--SSEEYLLLQNNVLKVRKHFQWHVFPSDYDAFYMVMYDL 355 (374)
Q Consensus 288 PF~~~iDw~~fsV~v~e~~v~~l~~~L~~i--~~~~i~~mq~~l~~v~~~f~y~~~~~~~DAf~~~~~~l 355 (374)
| +.+. ....+.++ .+..+|.+.++.+ +++...+|.++ . .+.+..+|...++..|
T Consensus 306 ~--e~~~-~g~~~lv~-~d~~~i~~ai~~ll~~~~~~~~~~~~----~------~~~g~~~a~~ri~~~l 361 (365)
T TIGR00236 306 P--ETVE-AGTNKLVG-TDKENITKAAKRLLTDPDEYKKMSNA----S------NPYGDGEASERIVEEL 361 (365)
T ss_pred h--HHHh-cCceEEeC-CCHHHHHHHHHHHHhChHHHHHhhhc----C------CCCcCchHHHHHHHHH
Confidence 2 3343 34455554 4555555544433 23333344332 1 2234567777777544
No 84
>PLN02275 transferase, transferring glycosyl groups
Probab=67.29 E-value=18 Score=35.76 Aligned_cols=92 Identities=11% Similarity=0.074 Sum_probs=53.7
Q ss_pred ceEEEEeccCCchHHHHHHHHHhc--CCCceeccCcc-cchHHhhhcCCcEEEeeCCC---CCCchhHHHHHhcCceeEE
Q 017299 207 NKLAFFAGAVNSPVREKLLQVWRN--DSEIYAHSGRL-KTPYADGLLGSKFCLHVKGF---EVNTARIADSLYYGCVPVI 280 (374)
Q Consensus 207 ~~l~~F~G~~~~~~R~~L~~~~~~--~~~~~~~~g~~-~~~y~~~l~~S~FCL~p~G~---~~~s~Rl~dAi~~GCIPVi 280 (374)
++-+.+.|. |+.|+.|.+..+. -+++.+..|.. ..+..+.|+.+..|+.|... .....-++|||++|| |||
T Consensus 261 ~i~l~ivG~--G~~~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~-PVV 337 (371)
T PLN02275 261 RLLFIITGK--GPQKAMYEEKISRLNLRHVAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGL-PVC 337 (371)
T ss_pred CeEEEEEeC--CCCHHHHHHHHHHcCCCceEEEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCC-CEE
Confidence 467788884 5556666655442 23333333322 35788889999988765321 113467999999995 888
Q ss_pred EecccccCCCCCCCCCcEEEEEc
Q 017299 281 IANHYDLPFADILNWKSFSIVVA 303 (374)
Q Consensus 281 i~d~~~lPF~~~iDw~~fsV~v~ 303 (374)
.++.=- ..++|.=....+.++
T Consensus 338 a~~~gg--~~eiv~~g~~G~lv~ 358 (371)
T PLN02275 338 AVSYSC--IGELVKDGKNGLLFS 358 (371)
T ss_pred EecCCC--hHHHccCCCCeEEEC
Confidence 876311 233443233444454
No 85
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=66.76 E-value=6.8 Score=40.27 Aligned_cols=88 Identities=10% Similarity=-0.023 Sum_probs=58.8
Q ss_pred chHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCce---eEEEecccccCCCCCCCCCcEEEEEcCCChhhHHHHHhc---
Q 017299 243 TPYADGLLGSKFCLHVKGFEVNTARIADSLYYGCV---PVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKG--- 316 (374)
Q Consensus 243 ~~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCI---PVii~d~~~lPF~~~iDw~~fsV~v~e~~v~~l~~~L~~--- 316 (374)
.+..+.++.|.-++.|.-......-..|||.+||= |||+++.--.+-. ..-++.|+..+..++-+.|..
T Consensus 352 ~el~~~y~~aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~~-----~~~g~lv~p~d~~~la~ai~~~l~ 426 (460)
T cd03788 352 EELAALYRAADVALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAAEE-----LSGALLVNPYDIDEVADAIHRALT 426 (460)
T ss_pred HHHHHHHHhccEEEeCccccccCcccceeEEEecCCCceEEEeccccchhh-----cCCCEEECCCCHHHHHHHHHHHHc
Confidence 47778899999888776554456778999999996 6999974322111 234678888888776665543
Q ss_pred CCHHHHHHHHHHHHhhhcc
Q 017299 317 ISSEEYLLLQNNVLKVRKH 335 (374)
Q Consensus 317 i~~~~i~~mq~~l~~v~~~ 335 (374)
.++++..+|.++.++....
T Consensus 427 ~~~~e~~~~~~~~~~~v~~ 445 (460)
T cd03788 427 MPLEERRERHRKLREYVRT 445 (460)
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 3666666666666554443
No 86
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=62.91 E-value=13 Score=37.43 Aligned_cols=86 Identities=14% Similarity=0.065 Sum_probs=49.0
Q ss_pred hHHhhhcCCcEEEeeCCC-CCCchhHHHHHhcCceeEEEecccccCCCCC---CCCCcEEEEEcCCChhhHHHHHhcC--
Q 017299 244 PYADGLLGSKFCLHVKGF-EVNTARIADSLYYGCVPVIIANHYDLPFADI---LNWKSFSIVVATLDIPLLKKILKGI-- 317 (374)
Q Consensus 244 ~y~~~l~~S~FCL~p~G~-~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~---iDw~~fsV~v~e~~v~~l~~~L~~i-- 317 (374)
+..+.++.|..|+++... .....-++||+.+|| |||.+++.. -+.+. +.-..+.+ +..|..+|-+.|..+
T Consensus 312 el~~~y~~aDi~~v~~S~~e~~g~~~lEAma~G~-PVI~g~~~~-~~~e~~~~~~~~g~~~--~~~d~~~La~~l~~ll~ 387 (425)
T PRK05749 312 ELGLLYAIADIAFVGGSLVKRGGHNPLEPAAFGV-PVISGPHTF-NFKEIFERLLQAGAAI--QVEDAEDLAKAVTYLLT 387 (425)
T ss_pred HHHHHHHhCCEEEECCCcCCCCCCCHHHHHHhCC-CEEECCCcc-CHHHHHHHHHHCCCeE--EECCHHHHHHHHHHHhc
Confidence 456677888887775332 113455999999995 788875421 11121 11123333 345555555555433
Q ss_pred CHHHHHHHHHHHHhhh
Q 017299 318 SSEEYLLLQNNVLKVR 333 (374)
Q Consensus 318 ~~~~i~~mq~~l~~v~ 333 (374)
+++...+|.++.++..
T Consensus 388 ~~~~~~~m~~~a~~~~ 403 (425)
T PRK05749 388 DPDARQAYGEAGVAFL 403 (425)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 4677777877766544
No 87
>PRK10125 putative glycosyl transferase; Provisional
Probab=62.85 E-value=21 Score=36.01 Aligned_cols=66 Identities=17% Similarity=0.172 Sum_probs=48.2
Q ss_pred hHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEecccccCCCCCCCCCcEEEEEcCCChhhHHHH
Q 017299 244 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKI 313 (374)
Q Consensus 244 ~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~iDw~~fsV~v~e~~v~~l~~~ 313 (374)
+..+.++.+.-.+.|.-......-+.|||++| +|||.+|-=-. .++++= .-.+.++..|...|-+.
T Consensus 299 ~l~~~y~~aDvfV~pS~~Egfp~vilEAmA~G-~PVVat~~gG~--~Eiv~~-~~G~lv~~~d~~~La~~ 364 (405)
T PRK10125 299 KLMSALNQMDALVFSSRVDNYPLILCEALSIG-VPVIATHSDAA--REVLQK-SGGKTVSEEEVLQLAQL 364 (405)
T ss_pred HHHHHHHhCCEEEECCccccCcCHHHHHHHcC-CCEEEeCCCCh--HHhEeC-CcEEEECCCCHHHHHhc
Confidence 45677888887777776666778899999999 58988874322 334542 35788999998887763
No 88
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=62.44 E-value=71 Score=31.31 Aligned_cols=80 Identities=13% Similarity=0.184 Sum_probs=46.5
Q ss_pred hHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEecccccCCCC-----CCCCCcEEEEEcCCChhhHHHHHhcC-
Q 017299 244 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFAD-----ILNWKSFSIVVATLDIPLLKKILKGI- 317 (374)
Q Consensus 244 ~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~-----~iDw~~fsV~v~e~~v~~l~~~L~~i- 317 (374)
+..+.|+.|...+...| ..-+.||+.+|+ |||+.+.. |-++ .+.-..+.+.+ .+..++.+.+..+
T Consensus 266 ~~~~l~~~aD~~v~~~g----g~t~~EA~a~g~-PvI~~~~~--~g~~~~n~~~~~~~G~~~~~--~~~~~l~~~i~~ll 336 (380)
T PRK13609 266 NIDELFRVTSCMITKPG----GITLSEAAALGV-PVILYKPV--PGQEKENAMYFERKGAAVVI--RDDEEVFAKTEALL 336 (380)
T ss_pred hHHHHHHhccEEEeCCC----chHHHHHHHhCC-CEEECCCC--CCcchHHHHHHHhCCcEEEE--CCHHHHHHHHHHHH
Confidence 46678888886665333 335889999996 58776532 1111 11112344433 4555555544443
Q ss_pred -CHHHHHHHHHHHHhh
Q 017299 318 -SSEEYLLLQNNVLKV 332 (374)
Q Consensus 318 -~~~~i~~mq~~l~~v 332 (374)
.++...+|.++.+++
T Consensus 337 ~~~~~~~~m~~~~~~~ 352 (380)
T PRK13609 337 QDDMKLLQMKEAMKSL 352 (380)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 567788888876553
No 89
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=58.85 E-value=27 Score=35.93 Aligned_cols=83 Identities=12% Similarity=0.041 Sum_probs=55.4
Q ss_pred chHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCcee----EEEecccccCCCCCCCCCcEEEEEcCCChhhHHHHHhc--
Q 017299 243 TPYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVP----VIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKG-- 316 (374)
Q Consensus 243 ~~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIP----Vii~d~~~lPF~~~iDw~~fsV~v~e~~v~~l~~~L~~-- 316 (374)
.+..+.++.+.-|++|.-......-..|||++|+ | ||+++.-=.+ +.+. -++.|+..|...+-+.|..
T Consensus 347 ~el~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~-P~~g~vVlS~~~G~~--~~l~---~gllVnP~d~~~lA~aI~~aL 420 (456)
T TIGR02400 347 EELMALYRAADVGLVTPLRDGMNLVAKEYVAAQD-PKDGVLILSEFAGAA--QELN---GALLVNPYDIDGMADAIARAL 420 (456)
T ss_pred HHHHHHHHhCcEEEECccccccCccHHHHHHhcC-CCCceEEEeCCCCCh--HHhC---CcEEECCCCHHHHHHHHHHHH
Confidence 4778889999988887644445677999999996 7 8998843111 1222 3678888888776665533
Q ss_pred -CCHHHHHHHHHHHHh
Q 017299 317 -ISSEEYLLLQNNVLK 331 (374)
Q Consensus 317 -i~~~~i~~mq~~l~~ 331 (374)
.++++..++.+++++
T Consensus 421 ~~~~~er~~r~~~~~~ 436 (456)
T TIGR02400 421 TMPLEEREERHRAMMD 436 (456)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 356665555555443
No 90
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=57.00 E-value=24 Score=33.57 Aligned_cols=33 Identities=12% Similarity=0.191 Sum_probs=27.0
Q ss_pred hHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEe
Q 017299 244 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIA 282 (374)
Q Consensus 244 ~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~ 282 (374)
+..+.|+.|..+++..|. -++|++.+| +|+|+-
T Consensus 234 ~m~~lm~~aDl~Is~~G~-----T~~E~~a~g-~P~i~i 266 (279)
T TIGR03590 234 NMAELMNEADLAIGAAGS-----TSWERCCLG-LPSLAI 266 (279)
T ss_pred HHHHHHHHCCEEEECCch-----HHHHHHHcC-CCEEEE
Confidence 677899999999998762 299999999 677653
No 91
>PF05686 Glyco_transf_90: Glycosyl transferase family 90; InterPro: IPR006598 Cryptococcus neoformans is a pathogenic fungus which most commonly affects the central nervous system and causes fatal meningoencephalitis primarily in patients with AIDS. This fungus produces a thick extracellular polysaccharide capsule which is well recognised as a virulence factor. CAP10 is required for capsule formation and virulence [].
Probab=52.98 E-value=59 Score=32.85 Aligned_cols=127 Identities=16% Similarity=0.231 Sum_probs=75.6
Q ss_pred CCCCCCceEEEEeccCCch-HHHHHHHHHhcCCCce---ec---cC-----cccchHHhhhcCCcEEEeeCCCCCCchhH
Q 017299 201 LGSSKRNKLAFFAGAVNSP-VREKLLQVWRNDSEIY---AH---SG-----RLKTPYADGLLGSKFCLHVKGFEVNTARI 268 (374)
Q Consensus 201 ~~~~~R~~l~~F~G~~~~~-~R~~L~~~~~~~~~~~---~~---~g-----~~~~~y~~~l~~S~FCL~p~G~~~~s~Rl 268 (374)
.+-..|.-.+||+|+..+. .|+.|+..-.+.++.. +. .+ .....-.+...+.+|-+...|.+ +|.|+
T Consensus 152 ~pW~~K~p~afWRG~~~~~~~R~~L~~~~~~~~~~~~a~i~~~d~~~~~~~~~~~~~l~~~~~yKYli~idG~~-~S~Rl 230 (395)
T PF05686_consen 152 VPWEDKKPKAFWRGSPTVAETRQRLVRCSRSHPDLWDARITKQDWDKEYKPGFKHVPLEDQCKYKYLIYIDGNA-WSGRL 230 (395)
T ss_pred CChhhcccceEECCCcCCCcchhHHHHHhccCCccceeeechhhhhhhccccccccCHHHHhhhheeecCCCce-eehhH
Confidence 3446788889999996544 5999887654433211 11 00 00112345567888999999987 57899
Q ss_pred HHHHhcCceeEEEecccccCCCC-CCCCCcEEEEEcC-CChhhHHHHHhcC--CHHHHHHHHHHH
Q 017299 269 ADSLYYGCVPVIIANHYDLPFAD-ILNWKSFSIVVAT-LDIPLLKKILKGI--SSEEYLLLQNNV 329 (374)
Q Consensus 269 ~dAi~~GCIPVii~d~~~lPF~~-~iDw~~fsV~v~e-~~v~~l~~~L~~i--~~~~i~~mq~~l 329 (374)
.--|.+|++.+.....+..=|.+ ..+|.-|. -|.. ++..+|.+.++=. .+++-.++=++.
T Consensus 231 kylL~c~SvVl~~~~~~~e~f~~~L~P~vHYV-PV~~~~d~sdL~~~v~w~~~~~~~A~~IA~~g 294 (395)
T PF05686_consen 231 KYLLACNSVVLKVKSPYYEFFYRALKPWVHYV-PVKRDDDLSDLEEKVEWLNAHDDEAQRIAENG 294 (395)
T ss_pred HHHHcCCceEEEeCCcHHHHHHhhhcccccEE-EeccccchhhHHHHhhhcccChHHHHHHHHHH
Confidence 99999999988876554333333 35676663 4444 3455555554332 234444444443
No 92
>PLN02501 digalactosyldiacylglycerol synthase
Probab=44.83 E-value=66 Score=35.26 Aligned_cols=37 Identities=30% Similarity=0.319 Sum_probs=26.6
Q ss_pred hhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEecc
Q 017299 247 DGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANH 284 (374)
Q Consensus 247 ~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~ 284 (374)
+.++.+...+.|.-......-+.|||++|| |||.+|.
T Consensus 614 ~lyasaDVFVlPS~sEgFGlVlLEAMA~Gl-PVVATd~ 650 (794)
T PLN02501 614 DSLHGYKVFINPSISDVLCTATAEALAMGK-FVVCADH 650 (794)
T ss_pred HHHHhCCEEEECCCcccchHHHHHHHHcCC-CEEEecC
Confidence 467777755556544445678999999996 7888874
No 93
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=40.93 E-value=38 Score=34.69 Aligned_cols=47 Identities=15% Similarity=0.206 Sum_probs=33.4
Q ss_pred hhcCCCeEEEeCCCCCCCCccccCCcCCCCCCCchhHHHHHHHHhcCCc-cCCCCCCccEEEE
Q 017299 38 QMNRSFRVYVYPHRRNDPFANVLLPVDFEPRGNYASESYFKKVFMKSHF-VTKDPSKADLFFL 99 (374)
Q Consensus 38 ~~~~~~kIYVY~~~~~~~~~~~~~p~~~~~~~~y~~E~~~~~~L~~S~~-rT~dP~eAdlF~v 99 (374)
.|..+-|||+.-++ |..+++-+|.+.- .|.+.+| .|+++++||+.+|
T Consensus 3 ~~~~~~~~~i~t~G--------------C~~N~~dse~~~~-~l~~~G~~~~~~~~~aD~ivi 50 (440)
T PRK14862 3 KMTAAPKIGFVSLG--------------CPKALVDSERILT-QLRAEGYEISPSYDGADLVIV 50 (440)
T ss_pred CCCCCCEEEEEEcC--------------CCCcHHHHHHHHH-HHHHCcCEECCCcccCCEEEE
Confidence 34445578888765 5667777776544 4555666 6888999999999
No 94
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=40.41 E-value=43 Score=32.74 Aligned_cols=85 Identities=9% Similarity=0.126 Sum_probs=46.6
Q ss_pred hHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEecccccCCCC----CCCCCcE------------E--EEEcCC
Q 017299 244 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFAD----ILNWKSF------------S--IVVATL 305 (374)
Q Consensus 244 ~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~----~iDw~~f------------s--V~v~e~ 305 (374)
+..+.++.|..++++.|. -..||+.+|| |||+.... -||.. .+....+ + +..++.
T Consensus 254 ~~~~~~~~aDl~v~~sG~-----~~lEa~a~G~-PvI~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 326 (380)
T PRK00025 254 QKREAMAAADAALAASGT-----VTLELALLKV-PMVVGYKV-SPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEA 326 (380)
T ss_pred cHHHHHHhCCEEEECccH-----HHHHHHHhCC-CEEEEEcc-CHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCC
Confidence 456677888888887653 3459999996 77766433 12210 0111111 1 112333
Q ss_pred ChhhHHHHHhcC--CHHHHHHHHHHHHhhhcc
Q 017299 306 DIPLLKKILKGI--SSEEYLLLQNNVLKVRKH 335 (374)
Q Consensus 306 ~v~~l~~~L~~i--~~~~i~~mq~~l~~v~~~ 335 (374)
+..+|.+.+..+ +++...+|.++...+.+.
T Consensus 327 ~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~ 358 (380)
T PRK00025 327 TPEKLARALLPLLADGARRQALLEGFTELHQQ 358 (380)
T ss_pred CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 444454444443 567777888887666554
No 95
>KOG3185 consensus Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]
Probab=38.90 E-value=26 Score=31.81 Aligned_cols=32 Identities=16% Similarity=0.259 Sum_probs=27.7
Q ss_pred CCcEEEeeCCCCCCchhHHHHHhcCceeEEEe
Q 017299 251 GSKFCLHVKGFEVNTARIADSLYYGCVPVIIA 282 (374)
Q Consensus 251 ~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~ 282 (374)
.-+|||+..|.+..-...|||=..+.|||+-.
T Consensus 20 TNtYclva~ggS~nfys~~e~el~d~IPiV~t 51 (245)
T KOG3185|consen 20 TNTYCLVAIGGSENFYSAFEAELGDVIPIVHT 51 (245)
T ss_pred ccceEEEEecCchhHHHHHHHHhcCccceEEe
Confidence 46799999998877788999999999999854
No 96
>PLN02846 digalactosyldiacylglycerol synthase
Probab=37.95 E-value=79 Score=32.72 Aligned_cols=38 Identities=26% Similarity=0.200 Sum_probs=27.2
Q ss_pred hhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEeccc
Q 017299 247 DGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHY 285 (374)
Q Consensus 247 ~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~ 285 (374)
+.++.+..++.|.-......-+.|||++|+ |||..|.-
T Consensus 296 ~~~~~~DvFv~pS~~Et~g~v~lEAmA~G~-PVVa~~~~ 333 (462)
T PLN02846 296 PLFHDYKVFLNPSTTDVVCTTTAEALAMGK-IVVCANHP 333 (462)
T ss_pred HHHHhCCEEEECCCcccchHHHHHHHHcCC-cEEEecCC
Confidence 466666766666544445678999999995 78888743
No 97
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=36.38 E-value=45 Score=34.21 Aligned_cols=41 Identities=15% Similarity=0.170 Sum_probs=30.8
Q ss_pred eEEEeCCCCCCCCccccCCcCCCCCCCchhHHHHHHHHhcCCc-cCCCCCCccEEEE
Q 017299 44 RVYVYPHRRNDPFANVLLPVDFEPRGNYASESYFKKVFMKSHF-VTKDPSKADLFFL 99 (374)
Q Consensus 44 kIYVY~~~~~~~~~~~~~p~~~~~~~~y~~E~~~~~~L~~S~~-rT~dP~eAdlF~v 99 (374)
|||+.-++ |..+++-+|.+.- .|.+.+| .|+++++||+++|
T Consensus 8 ~~~i~t~G--------------C~~N~~ds~~~~~-~l~~~G~~~~~~~~~ADiiii 49 (448)
T PRK14333 8 SYWITTFG--------------CQMNKADSERMAG-ILEDMGYQWAEDELQADLVLY 49 (448)
T ss_pred EEEEEEcC--------------CCCcHHHHHHHHH-HHHHCcCEECCCcccCCEEEE
Confidence 77777655 6667777776554 4566666 6899999999998
No 98
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=35.30 E-value=91 Score=34.63 Aligned_cols=85 Identities=9% Similarity=-0.008 Sum_probs=54.2
Q ss_pred chHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCce---eEEEecccccCCCCCCCCCcEEEEEcCCChhhHHHHHh---c
Q 017299 243 TPYADGLLGSKFCLHVKGFEVNTARIADSLYYGCV---PVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILK---G 316 (374)
Q Consensus 243 ~~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCI---PVii~d~~~lPF~~~iDw~~fsV~v~e~~v~~l~~~L~---~ 316 (374)
.++...++.+.-|++|.=.....--..|||++|+- ++|+++.-=.+ +.+ ..-++.|+..|+.++-+.+. .
T Consensus 367 ~el~aly~~ADvfvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G~~--~~l--~~~allVnP~D~~~lA~AI~~aL~ 442 (797)
T PLN03063 367 NYLCALYAITDVMLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAGAG--QSL--GAGALLVNPWNITEVSSAIKEALN 442 (797)
T ss_pred HHHHHHHHhCCEEEeCccccccCcchhhHheeecCCCCCEEeeCCcCch--hhh--cCCeEEECCCCHHHHHHHHHHHHh
Confidence 36778899999888876444445678999999983 28888732111 112 34588999988876555442 3
Q ss_pred CCHHHHHHHHHHHHh
Q 017299 317 ISSEEYLLLQNNVLK 331 (374)
Q Consensus 317 i~~~~i~~mq~~l~~ 331 (374)
+++++..++.+.+.+
T Consensus 443 m~~~er~~r~~~~~~ 457 (797)
T PLN03063 443 MSDEERETRHRHNFQ 457 (797)
T ss_pred CCHHHHHHHHHHHHH
Confidence 455555554444443
No 99
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=34.97 E-value=1.1e+02 Score=31.85 Aligned_cols=99 Identities=14% Similarity=0.152 Sum_probs=56.7
Q ss_pred hHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEecc----cccCCCCCC-CCCcEEEEEcCCChhhHHHHHh---
Q 017299 244 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANH----YDLPFADIL-NWKSFSIVVATLDIPLLKKILK--- 315 (374)
Q Consensus 244 ~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~----~~lPF~~~i-Dw~~fsV~v~e~~v~~l~~~L~--- 315 (374)
-+.+..+.|.+=|+|.=..|-.---..||+.|||||+-.-+ -+.++.+.. .=..-.+.+.+.+...+...|+
T Consensus 361 la~~i~agaD~~lmPSrfEPcGL~ql~amryGtvpIv~~tGGLadTV~~~~~~~~~~~gtGf~f~~~~~~~l~~al~rA~ 440 (487)
T COG0297 361 LAHLIYAGADVILMPSRFEPCGLTQLYAMRYGTLPIVRETGGLADTVVDRNEWLIQGVGTGFLFLQTNPDHLANALRRAL 440 (487)
T ss_pred HHHHHHhcCCEEEeCCcCcCCcHHHHHHHHcCCcceEcccCCccceecCccchhccCceeEEEEecCCHHHHHHHHHHHH
Confidence 45567888888888877767666778899999999987653 234432210 0023345555556655544442
Q ss_pred ---cCCHHHHHHHHHHHHhhhccceeccCCCC
Q 017299 316 ---GISSEEYLLLQNNVLKVRKHFQWHVFPSD 344 (374)
Q Consensus 316 ---~i~~~~i~~mq~~l~~v~~~f~y~~~~~~ 344 (374)
..++.....+|++.. ...|.|+.....
T Consensus 441 ~~y~~~~~~w~~~~~~~m--~~d~sw~~sa~~ 470 (487)
T COG0297 441 VLYRAPPLLWRKVQPNAM--GADFSWDLSAKE 470 (487)
T ss_pred HHhhCCHHHHHHHHHhhc--ccccCchhHHHH
Confidence 123333444444432 245666655443
No 100
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=34.28 E-value=53 Score=33.73 Aligned_cols=34 Identities=15% Similarity=0.115 Sum_probs=25.6
Q ss_pred CCCCCCchhHHHHHHHHhcCCc-cCCCCCCccEEEE
Q 017299 65 FEPRGNYASESYFKKVFMKSHF-VTKDPSKADLFFL 99 (374)
Q Consensus 65 ~~~~~~y~~E~~~~~~L~~S~~-rT~dP~eAdlF~v 99 (374)
+|..+++-+|.+.- .|.+.+| .|+++++||+.+|
T Consensus 15 GC~~N~~dse~~~~-~l~~~G~~~~~~~~~ADviii 49 (445)
T PRK14340 15 GCQMNQADSEIITA-LLQDEGYVPAASEEDADIVLL 49 (445)
T ss_pred CCCCcHHHHHHHHH-HHHHCcCEECCCcccCCEEEE
Confidence 36678888876554 4555666 6889999999998
No 101
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=33.29 E-value=57 Score=33.61 Aligned_cols=33 Identities=18% Similarity=0.177 Sum_probs=25.0
Q ss_pred CCCCCchhHHHHHHHHhcCCc-cCCCCCCccEEEE
Q 017299 66 EPRGNYASESYFKKVFMKSHF-VTKDPSKADLFFL 99 (374)
Q Consensus 66 ~~~~~y~~E~~~~~~L~~S~~-rT~dP~eAdlF~v 99 (374)
|.-+++-+|.+.- .|...+| .|+++++||+.+|
T Consensus 30 C~~N~~dse~~~~-~l~~~G~~~~~~~~~AD~~ii 63 (459)
T PRK14338 30 CQMNVSDSERLEA-ALQGVGYSPAERPEDADFIVL 63 (459)
T ss_pred CCCCHHHHHHHHH-HHHHCcCEECCCcccCCEEEE
Confidence 6677887776555 4555566 6899999999998
No 102
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=32.44 E-value=79 Score=29.98 Aligned_cols=36 Identities=17% Similarity=0.460 Sum_probs=28.6
Q ss_pred chHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEec
Q 017299 243 TPYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIAN 283 (374)
Q Consensus 243 ~~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d 283 (374)
.++.+.|+.|..+++-.|.+ -+.||+.+| +|+|+-.
T Consensus 242 ~~~~~~m~~ad~vIs~~G~~----t~~Ea~~~g-~P~l~ip 277 (318)
T PF13528_consen 242 PDFAELMAAADLVISKGGYT----TISEALALG-KPALVIP 277 (318)
T ss_pred HHHHHHHHhCCEEEECCCHH----HHHHHHHcC-CCEEEEe
Confidence 37889999999999999886 378999888 4665443
No 103
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=31.44 E-value=60 Score=33.13 Aligned_cols=33 Identities=15% Similarity=0.192 Sum_probs=24.7
Q ss_pred CCCCCchhHHHHHHHHhcCCc-cCCCCCCccEEEE
Q 017299 66 EPRGNYASESYFKKVFMKSHF-VTKDPSKADLFFL 99 (374)
Q Consensus 66 ~~~~~y~~E~~~~~~L~~S~~-rT~dP~eAdlF~v 99 (374)
|..+++-+|.+.- .|...+| .|+++++||+.+|
T Consensus 11 C~~N~~ds~~~~~-~l~~~G~~~~~~~~~ADv~ii 44 (439)
T PRK14328 11 CQMNEEDSEKLAG-MLKSMGYERTENREEADIIIF 44 (439)
T ss_pred CCCCHHHHHHHHH-HHHHCcCEECCCcCcCCEEEE
Confidence 6677777776544 4555566 6888999999998
No 104
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=31.33 E-value=65 Score=32.71 Aligned_cols=34 Identities=15% Similarity=0.143 Sum_probs=25.1
Q ss_pred CCCCCCchhHHHHHHHHhcCCc-cCCCCCCccEEEE
Q 017299 65 FEPRGNYASESYFKKVFMKSHF-VTKDPSKADLFFL 99 (374)
Q Consensus 65 ~~~~~~y~~E~~~~~~L~~S~~-rT~dP~eAdlF~v 99 (374)
+|..+++-+|.+.- .|...+| .|+++++||+.+|
T Consensus 10 GC~~N~~dse~~~~-~l~~~G~~~~~~~~~AD~vii 44 (418)
T PRK14336 10 GCQMNQAESERLGR-LFELWGYSLADKAEDAELVLV 44 (418)
T ss_pred CCCCcHHHHHHHHH-HHHHCcCEECCCcccCCEEEE
Confidence 36677887776555 4444555 6899999999998
No 105
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=30.47 E-value=1.3e+02 Score=29.46 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=28.2
Q ss_pred chHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEec
Q 017299 243 TPYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIAN 283 (374)
Q Consensus 243 ~~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d 283 (374)
..|...|..|...++- +|+. .-+.||+.+| -||.+-+
T Consensus 220 nPy~~~La~ad~i~VT-~DSv--SMvsEA~~tG-~pV~v~~ 256 (311)
T PF06258_consen 220 NPYLGFLAAADAIVVT-EDSV--SMVSEAAATG-KPVYVLP 256 (311)
T ss_pred CcHHHHHHhCCEEEEc-CccH--HHHHHHHHcC-CCEEEec
Confidence 3689989888877764 6653 4699999999 6887643
No 106
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=29.62 E-value=71 Score=32.63 Aligned_cols=34 Identities=9% Similarity=0.067 Sum_probs=25.3
Q ss_pred CCCCCCchhHHHHHHHHhcCCc-cCCCCCCccEEEE
Q 017299 65 FEPRGNYASESYFKKVFMKSHF-VTKDPSKADLFFL 99 (374)
Q Consensus 65 ~~~~~~y~~E~~~~~~L~~S~~-rT~dP~eAdlF~v 99 (374)
+|.-+++-+|.+.- .|...+| .|+++++||+.+|
T Consensus 9 GC~~N~~ds~~~~~-~l~~~G~~~~~~~~~ADi~ii 43 (440)
T PRK14334 9 GCQMNEYDTHLVES-ELVSLGAEIVDSVDEADFVLV 43 (440)
T ss_pred CCCCcHHHHHHHHH-HHHHCcCEECCCcccCCEEEE
Confidence 36677777776554 5555666 6889999999998
No 107
>PF07038 DUF1324: Protein of unknown function (DUF1324); InterPro: IPR009757 This family consists of several Circovirus proteins of around 60 residues in length. The function of this family is unknown.
Probab=29.43 E-value=37 Score=23.52 Aligned_cols=39 Identities=23% Similarity=0.513 Sum_probs=27.6
Q ss_pred cCCcEEEeeCCC-CCCchhHHHHHhcCceeEEEecccccCCCC
Q 017299 250 LGSKFCLHVKGF-EVNTARIADSLYYGCVPVIIANHYDLPFAD 291 (374)
Q Consensus 250 ~~S~FCL~p~G~-~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~ 291 (374)
-+|+||+.|--. +..|+|-|-.-..||--..+. .||.++
T Consensus 7 fqsrfcifpltfkssasprkfltnvtgccsatvt---rlplsn 46 (59)
T PF07038_consen 7 FQSRFCIFPLTFKSSASPRKFLTNVTGCCSATVT---RLPLSN 46 (59)
T ss_pred EeeeeEEEEeeeccCCChHHHhhcccceeeeeEE---eccchh
Confidence 479999999765 345788888888899755443 355543
No 108
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=29.41 E-value=69 Score=32.92 Aligned_cols=34 Identities=12% Similarity=0.112 Sum_probs=25.2
Q ss_pred CCCCCCchhHHHHHHHHhcCCc-cCCCCCCccEEEE
Q 017299 65 FEPRGNYASESYFKKVFMKSHF-VTKDPSKADLFFL 99 (374)
Q Consensus 65 ~~~~~~y~~E~~~~~~L~~S~~-rT~dP~eAdlF~v 99 (374)
+|.-+++-+|.+.- .|.+.+| .|++|++||+.+|
T Consensus 9 GC~~N~~dse~~~~-~l~~~G~~~~~~~~~ADv~ii 43 (455)
T PRK14335 9 GCQMNVAESASMEQ-LLLARGWTKAVDAETCDVLII 43 (455)
T ss_pred CCCCcHHHHHHHHH-HHHHCcCEECCCcccCCEEEE
Confidence 36677887776554 4455555 6899999999998
No 109
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=28.18 E-value=1.2e+02 Score=29.09 Aligned_cols=66 Identities=21% Similarity=0.382 Sum_probs=42.5
Q ss_pred hHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEecccccCCCC-----CCCCCcEEEEEcCCChhhHHHHHh
Q 017299 244 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFAD-----ILNWKSFSIVVATLDIPLLKKILK 315 (374)
Q Consensus 244 ~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~-----~iDw~~fsV~v~e~~v~~l~~~L~ 315 (374)
+..+.|..+..+++-.|.+ -+.||+.+| +|+|+-..... ++. .+.-...++.+++.++..+..+|.
T Consensus 240 ~~~~~l~~ad~vI~~~G~~----t~~Ea~~~g-~P~l~ip~~~~-~eQ~~na~~l~~~g~~~~l~~~~~~~~~~~~~ 310 (321)
T TIGR00661 240 NFKELIKNAELVITHGGFS----LISEALSLG-KPLIVIPDLGQ-FEQGNNAVKLEDLGCGIALEYKELRLLEAILD 310 (321)
T ss_pred HHHHHHHhCCEEEECCChH----HHHHHHHcC-CCEEEEcCCCc-ccHHHHHHHHHHCCCEEEcChhhHHHHHHHHh
Confidence 5778899999999988875 288999998 67877442100 011 134456667777777633444333
No 110
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=27.77 E-value=80 Score=32.22 Aligned_cols=33 Identities=18% Similarity=0.139 Sum_probs=24.9
Q ss_pred CCCCCchhHHHHHHHHhcCCc-cCCCCCCccEEEE
Q 017299 66 EPRGNYASESYFKKVFMKSHF-VTKDPSKADLFFL 99 (374)
Q Consensus 66 ~~~~~y~~E~~~~~~L~~S~~-rT~dP~eAdlF~v 99 (374)
|.-+++-+|.+.- .|.+.++ .|+++++||+.+|
T Consensus 10 C~~N~~ds~~~~~-~l~~~G~~~~~~~~~aDviii 43 (437)
T PRK14331 10 CQMNFNDSEKIKG-ILQTLGYEPADDWEEADLILV 43 (437)
T ss_pred CCCcHHHHHHHHH-HHHHCcCEECCCcccCCEEEE
Confidence 6667777776554 4555666 6888999999998
No 111
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=27.03 E-value=81 Score=32.21 Aligned_cols=33 Identities=27% Similarity=0.453 Sum_probs=24.8
Q ss_pred CCCCCchhHHHHHHHHhcCCc-cCCCCCCccEEEE
Q 017299 66 EPRGNYASESYFKKVFMKSHF-VTKDPSKADLFFL 99 (374)
Q Consensus 66 ~~~~~y~~E~~~~~~L~~S~~-rT~dP~eAdlF~v 99 (374)
|..++|-+|.+.. .|...++ .|+++++||+.+|
T Consensus 13 C~~N~~ds~~~~~-~l~~~g~~~~~~~~~aDvvii 46 (444)
T PRK14325 13 CQMNEYDSSKMAD-LLGAEGYELTDDPEEADLILL 46 (444)
T ss_pred CCCcHHHHHHHHH-HHHHCcCEECCCcCCCCEEEE
Confidence 6677887776555 4455555 6899999999998
No 112
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=25.49 E-value=76 Score=32.62 Aligned_cols=42 Identities=21% Similarity=0.261 Sum_probs=31.3
Q ss_pred hcCCHHHHHHHHHHHHhhhccceeccC------CCCccHHHHHHHHHHH
Q 017299 315 KGISSEEYLLLQNNVLKVRKHFQWHVF------PSDYDAFYMVMYDLWL 357 (374)
Q Consensus 315 ~~i~~~~i~~mq~~l~~v~~~f~y~~~------~~~~DAf~~~~~~l~~ 357 (374)
|.-+.+++.++-+.++...+.+..++. ..+...|..|+ ++..
T Consensus 275 R~yt~e~~~~~i~k~R~~~Pd~~i~tDiIVGFPgETeedFe~tl-~lv~ 322 (437)
T COG0621 275 RGYTVEEYLEIIEKLRAARPDIAISTDIIVGFPGETEEDFEETL-DLVE 322 (437)
T ss_pred CCcCHHHHHHHHHHHHHhCCCceEeccEEEECCCCCHHHHHHHH-HHHH
Confidence 455788888888999988888888775 23456699888 4444
No 113
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=24.60 E-value=1.1e+02 Score=31.48 Aligned_cols=33 Identities=21% Similarity=0.453 Sum_probs=25.0
Q ss_pred CCCCCchhHHHHHHHHhcCCc-cCCCCCCccEEEE
Q 017299 66 EPRGNYASESYFKKVFMKSHF-VTKDPSKADLFFL 99 (374)
Q Consensus 66 ~~~~~y~~E~~~~~~L~~S~~-rT~dP~eAdlF~v 99 (374)
|..+++-+|.+. ..|.+.+| .|.++++||+.+|
T Consensus 20 C~~N~~dse~~~-~~l~~~G~~~~~~~~~ADvvii 53 (449)
T PRK14332 20 CQMNEYDSGIVS-SLMRDAEYSTSNDPENSDIIFL 53 (449)
T ss_pred CCCCHHHHHHHH-HHHHHCcCEECCCcccCCEEEE
Confidence 666777777655 45556666 5789999999998
No 114
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=24.42 E-value=96 Score=31.63 Aligned_cols=34 Identities=18% Similarity=0.187 Sum_probs=24.4
Q ss_pred CCCCCCchhHHHHHHHHhcC-Cc-cCCCCCCccEEEE
Q 017299 65 FEPRGNYASESYFKKVFMKS-HF-VTKDPSKADLFFL 99 (374)
Q Consensus 65 ~~~~~~y~~E~~~~~~L~~S-~~-rT~dP~eAdlF~v 99 (374)
+|.-+++-+|.+.-. |... ++ .|.++++||+.+|
T Consensus 8 GC~~N~~dse~~~~~-l~~~~G~~~~~~~~~aDv~ii 43 (438)
T TIGR01574 8 GCQMNVRDSEHMAAL-LTAKEGYALTEDAKEADVLLI 43 (438)
T ss_pred CCCCcHHHHHHHHHH-HHhcCCcEECCCcccCCEEEE
Confidence 366777777765444 4444 55 6889999999998
No 115
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=23.90 E-value=1e+02 Score=31.30 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=25.1
Q ss_pred CCCCCCchhHHHHHHHHhcCCc-cCCCCCCccEEEE
Q 017299 65 FEPRGNYASESYFKKVFMKSHF-VTKDPSKADLFFL 99 (374)
Q Consensus 65 ~~~~~~y~~E~~~~~~L~~S~~-rT~dP~eAdlF~v 99 (374)
+|..+++.+|.+. ..|.+.++ .|+++++||+.+|
T Consensus 8 GC~~N~~ds~~~~-~~l~~~g~~~~~~~~~aD~v~i 42 (429)
T TIGR00089 8 GCQMNEADSEIMA-GLLKEAGYEVTDDPEEADVIII 42 (429)
T ss_pred CCCCcHHHHHHHH-HHHHHCcCEECCCcccCCEEEE
Confidence 3667787777644 44555666 6888999999999
No 116
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=23.66 E-value=8e+02 Score=26.34 Aligned_cols=134 Identities=13% Similarity=0.107 Sum_probs=73.9
Q ss_pred CceEEEEeccCCch------HHHHHHHHHhc--CCC-ceeccCcccchHHhhhcCCcEEEe-eCC-CCCCchhHHHHHhc
Q 017299 206 RNKLAFFAGAVNSP------VREKLLQVWRN--DSE-IYAHSGRLKTPYADGLLGSKFCLH-VKG-FEVNTARIADSLYY 274 (374)
Q Consensus 206 R~~l~~F~G~~~~~------~R~~L~~~~~~--~~~-~~~~~g~~~~~y~~~l~~S~FCL~-p~G-~~~~s~Rl~dAi~~ 274 (374)
++.-+.|+|+.... +-+.+.++-++ .++ +++..+=...-.....+.|.+-|. |.- ..+....-.-|+..
T Consensus 423 ~pvq~V~~Gka~p~d~~gk~~i~~i~~la~~~~~~~kv~f~~~Yd~~lA~~i~aG~Dv~L~~Psr~~EacGtsqMka~~n 502 (601)
T TIGR02094 423 RPVQIVFAGKAHPADGEGKEIIQRIVEFSKRPEFRGRIVFLENYDINLARYLVSGVDVWLNNPRRPLEASGTSGMKAAMN 502 (601)
T ss_pred CCeEEEEEEecCcccchHHHHHHHHHHHHhcccCCCCEEEEcCCCHHHHHHHhhhheeEEeCCCCCcCCchHHHHHHHHc
Confidence 67778999985432 33334433332 222 222222111234456778888888 764 77777788889999
Q ss_pred CceeEEEecccccCCCCCCCCCcEEEE----------EcCCChhhHHHHHh-cC------------CHHHHHHHHHHHHh
Q 017299 275 GCVPVIIANHYDLPFADILNWKSFSIV----------VATLDIPLLKKILK-GI------------SSEEYLLLQNNVLK 331 (374)
Q Consensus 275 GCIPVii~d~~~lPF~~~iDw~~fsV~----------v~e~~v~~l~~~L~-~i------------~~~~i~~mq~~l~~ 331 (374)
|++=.=+-|++.-.+.+. -+-|++- .++.+...|.+.|+ +| |++-+..|++.++.
T Consensus 503 GgL~~sv~DG~~~E~~~~--~nGf~f~~~~~~~~~~~~d~~da~~l~~~L~~ai~~~yy~~~~~~~p~~W~~~~k~am~~ 580 (601)
T TIGR02094 503 GVLNLSILDGWWGEGYDG--DNGWAIGDGEEYDDEEEQDRLDAEALYDLLENEVIPLYYDRDEKGIPADWVEMMKESIAT 580 (601)
T ss_pred CCceeecccCcccccCCC--CcEEEECCCccccccccccCCCHHHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHhc
Confidence 999888888765443221 2344333 11344445555552 23 22234445555555
Q ss_pred hhccceeccC
Q 017299 332 VRKHFQWHVF 341 (374)
Q Consensus 332 v~~~f~y~~~ 341 (374)
..+.|.|++.
T Consensus 581 ~~~~fsw~r~ 590 (601)
T TIGR02094 581 IAPRFSTNRM 590 (601)
T ss_pred cCCCCCHHHH
Confidence 5556766654
No 117
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=23.36 E-value=1e+02 Score=31.24 Aligned_cols=34 Identities=21% Similarity=0.078 Sum_probs=25.1
Q ss_pred CCCCCCchhHHHHHHHHhcCCc-cCCCCCCccEEEE
Q 017299 65 FEPRGNYASESYFKKVFMKSHF-VTKDPSKADLFFL 99 (374)
Q Consensus 65 ~~~~~~y~~E~~~~~~L~~S~~-rT~dP~eAdlF~v 99 (374)
+|.-++|.+|.+. ..|...++ .|+++++||+.+|
T Consensus 8 GC~~N~~ds~~~~-~~l~~~G~~~~~~~~~ADviii 42 (420)
T TIGR01578 8 GCTLNNGDSEIMK-NSLAAYGHELVNNAEEADLAIL 42 (420)
T ss_pred CCCCcHHHHHHHH-HHHHHCCCEECCCcccCCEEEE
Confidence 3667777777644 45555666 6889999999998
No 118
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=22.77 E-value=1.1e+02 Score=31.52 Aligned_cols=33 Identities=18% Similarity=0.185 Sum_probs=24.4
Q ss_pred CCCCCchhHHHHHHHHhcCCc-cCCCCCCccEEEE
Q 017299 66 EPRGNYASESYFKKVFMKSHF-VTKDPSKADLFFL 99 (374)
Q Consensus 66 ~~~~~y~~E~~~~~~L~~S~~-rT~dP~eAdlF~v 99 (374)
|.-+++-+|.+. ..|...+| .|.++++||+.+|
T Consensus 33 C~~N~~dse~~~-~~l~~~G~~~~~~~~~ADivii 66 (467)
T PRK14329 33 CQMNFADSEIVA-SILQMAGYNTTENLEEADLVLV 66 (467)
T ss_pred CCCcHHHHHHHH-HHHHHCcCEECCCcccCCEEEE
Confidence 667777776544 45555666 6888999999998
No 119
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=22.66 E-value=1.7e+02 Score=24.69 Aligned_cols=42 Identities=26% Similarity=0.264 Sum_probs=30.8
Q ss_pred hHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEeccc
Q 017299 244 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHY 285 (374)
Q Consensus 244 ~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~ 285 (374)
+|...-.+-+.+||.+|.-........|..+|..-|||.++-
T Consensus 40 d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~ 81 (143)
T cd02133 40 DFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNV 81 (143)
T ss_pred ccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecC
Confidence 454444567889998886543456778999999999997654
No 120
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=22.57 E-value=42 Score=32.86 Aligned_cols=71 Identities=13% Similarity=0.141 Sum_probs=61.8
Q ss_pred CCCCCCchhHHHHHhcCceeEEEecccccCCCCCCCCCcEEEEEcCCChhhHHHHHhcCCHHHHHHHHHHH
Q 017299 259 KGFEVNTARIADSLYYGCVPVIIANHYDLPFADILNWKSFSIVVATLDIPLLKKILKGISSEEYLLLQNNV 329 (374)
Q Consensus 259 ~G~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~~~iDw~~fsV~v~e~~v~~l~~~L~~i~~~~i~~mq~~l 329 (374)
.|-+...+.+++.+.---|+|=+|.--.--|.|+++++++-|....+....|.+.=|+++++++.++....
T Consensus 145 ~GLs~~Gk~lV~~~N~LgIiiDlSH~s~kt~~Dvl~~s~~PviaSHSN~~al~~h~RNl~D~qlkaI~~~g 215 (313)
T COG2355 145 GGLTPFGKELVREMNELGIIIDLSHLSDKTFWDVLDLSKAPVVASHSNARALVDHPRNLSDEQLKAIAETG 215 (313)
T ss_pred CCCCHHHHHHHHHHHhcCCEEEecccCCccHHHHHhccCCceEEecCCchhccCCCCCCCHHHHHHHHhcC
Confidence 45666789999999988899988887788899999999999999999988888888999999998887754
No 121
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=21.02 E-value=8.3e+02 Score=24.27 Aligned_cols=81 Identities=21% Similarity=0.304 Sum_probs=55.0
Q ss_pred hHHhhhcCCcEEEeeCCCCCCchhHHHHHhcCceeEEEecccccCCC---CC------CCCCcEEEEEcCCCh--hhHHH
Q 017299 244 PYADGLLGSKFCLHVKGFEVNTARIADSLYYGCVPVIIANHYDLPFA---DI------LNWKSFSIVVATLDI--PLLKK 312 (374)
Q Consensus 244 ~y~~~l~~S~FCL~p~G~~~~s~Rl~dAi~~GCIPVii~d~~~lPF~---~~------iDw~~fsV~v~e~~v--~~l~~ 312 (374)
++.+.|+.|.-++|=+|.+ -+.|+...| +|+|+-. +|.. +. +-=...+..++++++ .+|.+
T Consensus 245 dm~~~~~~ADLvIsRaGa~----Ti~E~~a~g-~P~IliP---~p~~~~~~Q~~NA~~l~~~gaa~~i~~~~lt~~~l~~ 316 (357)
T COG0707 245 DMAALLAAADLVISRAGAL----TIAELLALG-VPAILVP---YPPGADGHQEYNAKFLEKAGAALVIRQSELTPEKLAE 316 (357)
T ss_pred hHHHHHHhccEEEeCCccc----HHHHHHHhC-CCEEEeC---CCCCccchHHHHHHHHHhCCCEEEeccccCCHHHHHH
Confidence 6778899999999987754 267776665 8888643 2222 00 111356888999884 45666
Q ss_pred HHhcC--CHHHHHHHHHHHHhh
Q 017299 313 ILKGI--SSEEYLLLQNNVLKV 332 (374)
Q Consensus 313 ~L~~i--~~~~i~~mq~~l~~v 332 (374)
.|.++ +++++.+|.++.+.+
T Consensus 317 ~i~~l~~~~~~l~~m~~~a~~~ 338 (357)
T COG0707 317 LILRLLSNPEKLKAMAENAKKL 338 (357)
T ss_pred HHHHHhcCHHHHHHHHHHHHhc
Confidence 66655 369999999887554
No 122
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=20.47 E-value=1.3e+02 Score=30.67 Aligned_cols=34 Identities=21% Similarity=0.277 Sum_probs=24.4
Q ss_pred CCCCCCchhHHHHHHHHhcCCc-cCCCCCCccEEEE
Q 017299 65 FEPRGNYASESYFKKVFMKSHF-VTKDPSKADLFFL 99 (374)
Q Consensus 65 ~~~~~~y~~E~~~~~~L~~S~~-rT~dP~eAdlF~v 99 (374)
+|.-+++-+|.+. +.|...++ .|.|+++||+.+|
T Consensus 8 GC~~N~~ds~~~~-~~l~~~g~~~~~~~~~aD~vii 42 (430)
T TIGR01125 8 GCPKNLVDSEVML-GILREAGYEVTPNYEDADYVIV 42 (430)
T ss_pred CCCCcHHHHHHHH-HHHHHCcCEECCCcccCCEEEE
Confidence 3666777766544 44555555 6899999999998
No 123
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=20.35 E-value=1.5e+02 Score=31.02 Aligned_cols=33 Identities=12% Similarity=0.106 Sum_probs=24.1
Q ss_pred CCCCCchhHHHHHHHHhcCCc-cCCCCCCccEEEE
Q 017299 66 EPRGNYASESYFKKVFMKSHF-VTKDPSKADLFFL 99 (374)
Q Consensus 66 ~~~~~y~~E~~~~~~L~~S~~-rT~dP~eAdlF~v 99 (374)
|.-+++-+|.+.- .|.+.+| .|+++++||+++|
T Consensus 23 C~~N~~dse~~~~-~L~~~G~~~~~~~e~ADvvvi 56 (502)
T PRK14326 23 CQMNVHDSERLAG-LLEAAGYVRAAEGQDADVVVF 56 (502)
T ss_pred CCCcHHHHHHHHH-HHHHCCCEECCCcCCCCEEEE
Confidence 5667777776544 5555566 6888999999998
Done!