RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 017304
(374 letters)
>gnl|CDD|215161 PLN02287, PLN02287, 3-ketoacyl-CoA thiolase.
Length = 452
Score = 654 bits (1690), Expect = 0.0
Identities = 295/361 (81%), Positives = 331/361 (91%), Gaps = 3/361 (0%)
Query: 1 MEKALHRQRILLQHLQPSSSQTSDSPAISASICSAGEAAGYHRKPAFDDDVVIVAAYRTA 60
MEKA++RQR+LL+HL+PSSS + ++SAS C+AG++A YHR AF DDVVIVAAYRT
Sbjct: 1 MEKAINRQRVLLRHLRPSSS---EPSSLSASACAAGDSAAYHRTTAFGDDVVIVAAYRTP 57
Query: 61 ICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAF 120
ICKAKRGGFKDT DDLLAPVLKAV+EKT LNPSEVGDIVVGTVLAPGS RA ECRMAAF
Sbjct: 58 ICKAKRGGFKDTYPDDLLAPVLKAVVEKTGLNPSEVGDIVVGTVLAPGSQRANECRMAAF 117
Query: 121 YAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNP 180
YAGFPETVP+RTVNRQCSSGLQAVADVA AIKAG YDIGI AG+ESMT N ++ G VNP
Sbjct: 118 YAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGVESMTTNPMAWEGGVNP 177
Query: 181 KVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLAAVESHRRAAAATASGKFKDEIIPV 240
+VE F+QA+DCLLPMGITSENVA+RFGVTR+EQD AAVESHR+AAAATASGKFKDEI+PV
Sbjct: 178 RVESFSQAQDCLLPMGITSENVAERFGVTREEQDQAAVESHRKAAAATASGKFKDEIVPV 237
Query: 241 NTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKKDGTTTAGNASQVSDGAGAV 300
+TKIVDPKTG EK + ISVDDGIRPNTT+ADLAKLKP FKK+GTTTAGN+SQVSDGAGAV
Sbjct: 238 HTKIVDPKTGEEKPIVISVDDGIRPNTTLADLAKLKPVFKKNGTTTAGNSSQVSDGAGAV 297
Query: 301 LLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEIN 360
LLMKRS+A+QKGLPILGVFRSF+AVGVDP+VMGIGPAVAIPAAVK+AGL++DDI+LFEIN
Sbjct: 298 LLMKRSVAMQKGLPILGVFRSFAAVGVDPAVMGIGPAVAIPAAVKAAGLELDDIDLFEIN 357
Query: 361 E 361
E
Sbjct: 358 E 358
>gnl|CDD|238383 cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze
the reversible thiolytic cleavage of 3-ketoacyl-CoA into
acyl-CoA and acetyl-CoA, a 2-step reaction involving a
covalent intermediate formed with a catalytic cysteine.
They are found in prokaryotes and eukaryotes (cytosol,
microbodies and mitochondria). There are 2 functional
different classes: thiolase-I (3-ketoacyl-CoA thiolase)
and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I
can cleave longer fatty acid molecules and plays an
important role in the beta-oxidative degradation of
fatty acids. Thiolase-II has a high substrate
specificity. Although it can cleave acetoacyl-CoA, its
main function is the synthesis of acetoacyl-CoA from two
molecules of acetyl-CoA, which gives it importance in
several biosynthetic pathways.
Length = 386
Score = 377 bits (970), Expect = e-130
Identities = 153/320 (47%), Positives = 203/320 (63%), Gaps = 18/320 (5%)
Query: 52 VIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTR 111
VIV+A RT I + G KD ADDL A V+KA++E+ L+P EV D+++G VL G +
Sbjct: 1 VIVSAVRTPIGRFG-GALKDVSADDLGAAVIKALLERAGLDPEEVDDVIMGNVLQAGEGQ 59
Query: 112 AMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNS 171
R AA AG PE+VP TVNR C SGLQAVA A +I AG D+ +A G+ESM+
Sbjct: 60 NP-ARQAALLAGLPESVPATTVNRVCGSGLQAVALAAQSIAAGEADVVVAGGVESMSRAP 118
Query: 172 ISV----------VGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLAAVESH 221
+ + ++ ++ L MGIT+ENVA+++G++R+EQD A+ SH
Sbjct: 119 YLLPKARRGGRLGLNTLDGMLDDGLTDPFTGLSMGITAENVAEKYGISREEQDEFALRSH 178
Query: 222 RRAAAATASGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKK 281
+RAAAA +G+FKDEI+PV G + V + D+G RP+TT+ LAKLKPAFKK
Sbjct: 179 QRAAAAQEAGRFKDEIVPVEVP------GRKGPVVVDRDEGPRPDTTLEKLAKLKPAFKK 232
Query: 282 DGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIP 341
DGT TAGNAS ++DGA AVLLM A + GL L ++ GVDP++MGIGP AIP
Sbjct: 233 DGTVTAGNASGINDGAAAVLLMSEEKAKELGLKPLARIVGYAVAGVDPAIMGIGPVPAIP 292
Query: 342 AAVKSAGLQIDDINLFEINE 361
A+K AGL +DDI+L EINE
Sbjct: 293 KALKRAGLTLDDIDLIEINE 312
>gnl|CDD|233642 TIGR01930, AcCoA-C-Actrans, acetyl-CoA acetyltransferases. This
model represents a large family of enzymes which
catalyze the thiolysis of a linear fatty acid CoA (or
acetoacetyl-CoA) using a second CoA molecule to produce
acetyl-CoA and a CoA-ester product two carbons shorter
(or, alternatively, the condensation of two molecules of
acetyl-CoA to produce acetoacetyl-CoA and CoA). This
enzyme is also known as "thiolase", "3-ketoacyl-CoA
thiolase", "beta-ketothiolase" and "Fatty oxidation
complex beta subunit". When catalyzing the degradative
reaction on fatty acids the corresponding EC number is
2.3.1.16. The condensation reaction corresponds to
2.3.1.9. Note that the enzymes which catalyze the
condensation are generally not involved in fatty acid
biosynthesis, which is carried out by a decarboxylating
condensation of acetyl and malonyl esters of acyl
carrier proteins. Rather, this activity may produce
acetoacetyl-CoA for pathways such as IPP biosynthesis in
the absence of sufficient fatty acid oxidation [Fatty
acid and phospholipid metabolism, Other].
Length = 386
Score = 348 bits (896), Expect = e-118
Identities = 150/321 (46%), Positives = 194/321 (60%), Gaps = 20/321 (6%)
Query: 53 IVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRA 112
IVAA RT I K G KD A+DL A V+K ++E+ L+P + D++ G VL G
Sbjct: 1 IVAAARTPIGKFG-GSLKDVSAEDLGAAVIKELLERNPLDPELIDDVIFGNVLQAGEQ-Q 58
Query: 113 MECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSI 172
R AA AG PE+VP TVNRQC+SGLQAV A I+AG D+ +A G+ESM+
Sbjct: 59 NIARQAALLAGLPESVPAYTVNRQCASGLQAVILAAQLIRAGEADVVVAGGVESMSRVPY 118
Query: 173 SV----VGQVNPKVEIFTQARDCL--------LPMGITSENVAQRFGVTRQEQDLAAVES 220
SV V P L MG+T+EN+A+++G++R+EQD A+ S
Sbjct: 119 SVPRSRRWGVKPGNAELEDQILKDGLDDPLNGLSMGLTAENLAKKYGISREEQDEYALRS 178
Query: 221 HRRAAAATASGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFK 280
H+RAA A G FKDEI+PV + K V +S D+GIRPNTT+ LAKLKPAF
Sbjct: 179 HQRAAKAWEEGLFKDEIVPV--SVKGRKGPV----VVSSDEGIRPNTTLEKLAKLKPAFD 232
Query: 281 KDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAI 340
+GT TAGN+S ++DGA A+LLM A + GL L S++ GVDP +MG+GP AI
Sbjct: 233 PNGTVTAGNSSPLNDGAAALLLMSEEKAKELGLTPLARIVSYAVAGVDPEIMGLGPVPAI 292
Query: 341 PAAVKSAGLQIDDINLFEINE 361
P A+K AGL I DI+LFEINE
Sbjct: 293 PKALKKAGLSISDIDLFEINE 313
>gnl|CDD|180261 PRK05790, PRK05790, putative acyltransferase; Provisional.
Length = 393
Score = 309 bits (795), Expect = e-103
Identities = 145/324 (44%), Positives = 197/324 (60%), Gaps = 18/324 (5%)
Query: 49 DDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPG 108
DVVIV+A RT I K G KD A +L A V+KA +E+ + P +V ++++G VL G
Sbjct: 2 KDVVIVSAARTPIGKFG-GALKDVSAVELGAIVIKAALERAGVPPEQVDEVIMGQVLQAG 60
Query: 109 STRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT 168
+ + R AA AG P VP T+N+ C SGL+AVA A AI+AG DI +A G ESM+
Sbjct: 61 AGQ-NPARQAALKAGLPVEVPALTINKVCGSGLKAVALAAQAIRAGDADIVVAGGQESMS 119
Query: 169 ----VNSISVVGQVNPKVEIF-TQARDCL------LPMGITSENVAQRFGVTRQEQDLAA 217
V S GQ VE+ T D L MGIT+EN+A+++G+TR+EQD A
Sbjct: 120 QAPHVLPGSRWGQKMGDVELVDTMIHDGLTDAFNGYHMGITAENLAEQYGITREEQDEFA 179
Query: 218 VESHRRAAAATASGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKP 277
+ S ++A AA +G+FKDEI+PV K V + D+ RP+TT LAKL+P
Sbjct: 180 LASQQKAEAAIKAGRFKDEIVPVTIK-----QRKGDPVVVDTDEHPRPDTTAESLAKLRP 234
Query: 278 AFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPA 337
AF KDGT TAGNAS ++DGA AV++M + A + GL L S++ GVDP++MGIGP
Sbjct: 235 AFDKDGTVTAGNASGINDGAAAVVVMSEAKAKELGLTPLARIVSYAVAGVDPAIMGIGPV 294
Query: 338 VAIPAAVKSAGLQIDDINLFEINE 361
AI A++ AG + D++L EINE
Sbjct: 295 PAIRKALEKAGWSLADLDLIEINE 318
>gnl|CDD|181072 PRK07661, PRK07661, acetyl-CoA acetyltransferase; Provisional.
Length = 391
Score = 291 bits (746), Expect = 4e-96
Identities = 140/315 (44%), Positives = 193/315 (61%), Gaps = 8/315 (2%)
Query: 52 VIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTR 111
VIVA RT + KAK+G K DDL A V+K +++ + D+++G + P + +
Sbjct: 5 VIVAGARTPVGKAKKGSLKTVRPDDLGALVVKETLKRAGNYEGPIDDLIIGCAM-PEAEQ 63
Query: 112 AME-CRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVN 170
+ R AG P TVP T+NR CSSGLQ++A A I G + IA G ESM++
Sbjct: 64 GLNMARNIGALAGLPYTVPAITINRYCSSGLQSIAYGAERIMLGHSEAVIAGGAESMSL- 122
Query: 171 SISVVGQV-NPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLAAVESHRRAAAATA 229
+ ++G V P + A + + MG T+E VA ++G++R++QD AV SH+RAA A A
Sbjct: 123 -VPMMGHVVRPNPRLVEAAPEYYMGMGHTAEQVAVKYGISREDQDAFAVRSHQRAAKALA 181
Query: 230 SGKFKDEIIPVN---TKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKKDGTTT 286
GKF DEI+PV+ + + E+ +T S D+G+R +TT+ L KL+PAF G+ T
Sbjct: 182 EGKFADEIVPVDVTLRTVGENNKLQEETITFSQDEGVRADTTLEILGKLRPAFNVKGSVT 241
Query: 287 AGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKS 346
AGN+SQ+SDGA AVLLM R A GL L FRSF+ GV P VMGIGP AIP A+K
Sbjct: 242 AGNSSQMSDGAAAVLLMDREKAESDGLKPLAKFRSFAVAGVPPEVMGIGPIAAIPKALKL 301
Query: 347 AGLQIDDINLFEINE 361
AGL++ DI LFE+NE
Sbjct: 302 AGLELSDIGLFELNE 316
>gnl|CDD|181626 PRK09052, PRK09052, acetyl-CoA acetyltransferase; Provisional.
Length = 399
Score = 291 bits (746), Expect = 7e-96
Identities = 143/324 (44%), Positives = 198/324 (61%), Gaps = 18/324 (5%)
Query: 50 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTR-LNPSEVGDIVVGTVLAPG 108
D IVAA RT + KA RG FK+T DDLLA VL++ + + L+P + D +VG +
Sbjct: 7 DAYIVAATRTPVGKAPRGMFKNTRPDDLLAHVLRSAVAQVPGLDPKLIEDAIVGCAMPEA 66
Query: 109 STRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT 168
R+ A AG P +V TVNR C+SGLQAVA A I+ G D+ IAAG+ESM+
Sbjct: 67 EQGLNVARIGALLAGLPNSVGGVTVNRFCASGLQAVAMAADRIRVGEADVMIAAGVESMS 126
Query: 169 V-----NSISVVGQVNPKVEIFTQARDCLLP--MGITSENVAQRFGVTRQEQDLAAVESH 221
+ N S+ +P IF + + + MG+T+E VA+++ V+R++QD A+ESH
Sbjct: 127 MVPMMGNKPSM----SP--AIFARDENVGIAYGMGLTAEKVAEQWKVSREDQDAFALESH 180
Query: 222 RRAAAATASGKFKDEIIP--VNTKIVDPKTG--VEKRVTISVDDGIRPNTTIADLAKLKP 277
++A AA +G+FKDEI P + + D TG K T+ +D+G R +T++ LAKLKP
Sbjct: 181 QKAIAAQQAGEFKDEITPYEITERFPDLATGEVDVKTRTVDLDEGPRADTSLEGLAKLKP 240
Query: 278 AFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPA 337
F G+ TAGN+SQ SDGAGAV+L+ Q L L F SF+ GV P +MGIGP
Sbjct: 241 VFANKGSVTAGNSSQTSDGAGAVILVSEKALKQFNLTPLARFVSFAVAGVPPEIMGIGPI 300
Query: 338 VAIPAAVKSAGLQIDDINLFEINE 361
AIPAA+K AGL+ DD++ E+NE
Sbjct: 301 EAIPAALKQAGLKQDDLDWIELNE 324
>gnl|CDD|215722 pfam00108, Thiolase_N, Thiolase, N-terminal domain. Thiolase is
reported to be structurally related to beta-ketoacyl
synthase (pfam00109), and also chalcone synthase.
Length = 262
Score = 282 bits (724), Expect = 1e-94
Identities = 121/269 (44%), Positives = 167/269 (62%), Gaps = 19/269 (7%)
Query: 50 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGS 109
DVVIV+A RT I + G KD A DL A +KA +E+ + P +V ++++G VL G
Sbjct: 1 DVVIVSAARTPI-GSFGGSLKDLSAVDLGAIAIKAALERAGVKPEDVDEVIMGNVLQAGE 59
Query: 110 TRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT- 168
R AA AG P++VP T+N+ C SGL+AVA A AI+AG DI +A G+ESM+
Sbjct: 60 G-QNPARQAALKAGIPDSVPAVTINKVCGSGLKAVALAAQAIRAGDADIVVAGGVESMSN 118
Query: 169 ----VNSISVVGQVNPKVEIFTQARD------CLLPMGITSENVAQRFGVTRQEQDLAAV 218
+ + V ++ + T +D L+ MGIT+ENVA+++G++R+EQD A+
Sbjct: 119 APYVLPASRVGARMGDAKLVDTMLKDGLTDAFNLIHMGITAENVAKKYGISREEQDEFAL 178
Query: 219 ESHRRAAAATASGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPA 278
S ++AAAA +GKFKDEI+PV K K + + D+GIRP TT+ LAKLKPA
Sbjct: 179 RSQQKAAAAQKAGKFKDEIVPVTIKGRK-----GKPLVVDKDEGIRPGTTLESLAKLKPA 233
Query: 279 FKKD-GTTTAGNASQVSDGAGAVLLMKRS 306
F K+ GT TAGNAS ++DGA AVLLM S
Sbjct: 234 FDKENGTVTAGNASGLNDGAAAVLLMSES 262
>gnl|CDD|180843 PRK07108, PRK07108, acetyl-CoA acetyltransferase; Provisional.
Length = 392
Score = 255 bits (654), Expect = 3e-82
Identities = 139/328 (42%), Positives = 196/328 (59%), Gaps = 29/328 (8%)
Query: 50 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGS 109
+ VIV+ RT + K+ RG F T L V++ +E+ +L+P+EV D+++G G+
Sbjct: 3 EAVIVSTARTPLAKSWRGAFNMTHGATLGGHVVQHAVERAKLDPAEVEDVIMGCANPEGA 62
Query: 110 TRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTV 169
T A R A AG P TVP TVNR CSSGLQ +A A + AG D+ +A G+ES
Sbjct: 63 TGANIARQIALRAGLPVTVPGMTVNRFCSSGLQTIALAAQRVIAGEGDVFVAGGVES--- 119
Query: 170 NSISVVGQ------------VNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLAA 217
IS V V K EI+ M T+ENVA+R+G++++ QD
Sbjct: 120 --ISCVQNEMNRHMLREGWLVEHKPEIY-------WSMLQTAENVAKRYGISKERQDEYG 170
Query: 218 VESHRRAAAATASGKFKDEIIP--VNTKIVDPKTG--VEKRVTISVDDGIRPNTTIADLA 273
V+S +RAAAA A+G+F DEI+P V + D TG K VT+S D+GIRP+TT+ ++
Sbjct: 171 VQSQQRAAAAQAAGRFDDEIVPITVTAGVADKATGRLFTKEVTVSADEGIRPDTTLEGVS 230
Query: 274 KLKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMG 333
K++ A G TAGNASQ SDGA A ++M +A ++GL LG+FR F+ G +P MG
Sbjct: 231 KIRSALP-GGVITAGNASQFSDGASACVVMNAKVAEREGLQPLGIFRGFAVAGCEPDEMG 289
Query: 334 IGPAVAIPAAVKSAGLQIDDINLFEINE 361
IGP A+P +K AGL++DDI+L+E+NE
Sbjct: 290 IGPVFAVPKLLKQAGLKVDDIDLWELNE 317
>gnl|CDD|181625 PRK09051, PRK09051, beta-ketothiolase; Provisional.
Length = 394
Score = 254 bits (650), Expect = 2e-81
Identities = 130/327 (39%), Positives = 182/327 (55%), Gaps = 26/327 (7%)
Query: 50 DVVIVAAYRTAICKAKRGGFKDTLAD----DLLAPVLKAVIEKTRLNPSEVGDIVVGTVL 105
+VV+V+ RTAI G F +L D DL A V++ + + ++P +VG +V G V+
Sbjct: 4 EVVVVSGVRTAI-----GTFGGSLKDVAPTDLGATVVREALARAGVDPDQVGHVVFGHVI 58
Query: 106 APGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLE 165
R+AA AG P+ P VNR C SGLQA+ A AI G D+ I G E
Sbjct: 59 PTEPRDMYLSRVAAINAGVPQETPAFNVNRLCGSGLQAIVSAAQAILLGDADVAIGGGAE 118
Query: 166 SMTVNSISVVGQVNPKVEIFTQARDCLL----------PMGITSENVAQRFGVTRQEQDL 215
SM+ + + D ++ MG+T+ENVA ++G++R+ QD
Sbjct: 119 SMSRAPYLLPAARWGARMGDAKLVDMMVGALHDPFGTIHMGVTAENVAAKYGISREAQDA 178
Query: 216 AAVESHRRAAAATASGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKL 275
A+ESHRRAAAA A+G FKD+I+PV K + G V D+ +R +TT+ DLAKL
Sbjct: 179 LALESHRRAAAAIAAGYFKDQIVPVEIKT---RKGE---VVFDTDEHVRADTTLEDLAKL 232
Query: 276 KPAFKKD-GTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGI 334
KP FKK+ GT TAGNAS ++DGA AV+L + A +GL L ++ GVDP MGI
Sbjct: 233 KPVFKKENGTVTAGNASGINDGAAAVVLAEADAAEARGLKPLARLVGYAHAGVDPEYMGI 292
Query: 335 GPAVAIPAAVKSAGLQIDDINLFEINE 361
GP A A++ AGL + D+++ E NE
Sbjct: 293 GPVPATQKALERAGLTVADLDVIEANE 319
>gnl|CDD|181592 PRK08947, fadA, 3-ketoacyl-CoA thiolase; Reviewed.
Length = 387
Score = 247 bits (632), Expect = 6e-79
Identities = 130/317 (41%), Positives = 183/317 (57%), Gaps = 15/317 (4%)
Query: 50 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTV---L 105
DVVIV A RT + ++K G F++ A+DL A ++++++ + L+P+E+ DI+ G V L
Sbjct: 3 DVVIVDAIRTPMGRSKGGAFRNVRAEDLSAHLMRSLLARNPALDPAEIDDIIWGCVQQTL 62
Query: 106 APGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLE 165
G A R AA AG P +VP TVNR C S +QA+ D A AI G D+ + G+E
Sbjct: 63 EQGFNIA---RNAALLAGIPHSVPAVTVNRLCGSSMQALHDAARAIMTGDGDVFLIGGVE 119
Query: 166 SMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLAAVESHRRAA 225
M + + V+ + MG+T+E + + G++R++QD A SH+RA
Sbjct: 120 HM--GHVPMNHGVDFHPGLSKNVAKAAGMMGLTAEMLGKMHGISREQQDAFAARSHQRAW 177
Query: 226 AATASGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFK-KDGT 284
AAT G+FK+EIIP D GV K D+ IRP TT+ LA L+PAF +GT
Sbjct: 178 AATQEGRFKNEIIPTEGHDAD---GVLKLFDY--DEVIRPETTVEALAALRPAFDPVNGT 232
Query: 285 TTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAV 344
TAG +S +SDGA A+L+M S A + GL RS + G DPS+MG GP A A+
Sbjct: 233 VTAGTSSALSDGASAMLVMSESRAKELGLKPRARIRSMAVAGCDPSIMGYGPVPATQKAL 292
Query: 345 KSAGLQIDDINLFEINE 361
K AGL I DI++FE+NE
Sbjct: 293 KRAGLSISDIDVFELNE 309
>gnl|CDD|223261 COG0183, PaaJ, Acetyl-CoA acetyltransferase [Lipid metabolism].
Length = 392
Score = 237 bits (607), Expect = 3e-75
Identities = 121/326 (37%), Positives = 172/326 (52%), Gaps = 24/326 (7%)
Query: 48 DDDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTR--LNPSEVGDIVVGTVL 105
DV IV A RT K G + A+ L A ++ A +E+ ++ ++V D+++G VL
Sbjct: 1 MRDVAIVGAGRTPFGKFGDGSLAELAAEALGAALIDAGLERAPADVDAADVDDVILGCVL 60
Query: 106 APGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLE 165
G R AA AG P +VP TVNR C+SGL AV A AI +G D+ +A G+E
Sbjct: 61 QAGEQGQNIARQAALAAGLPGSVPAVTVNRACASGLAAVRLAAQAIASGEADVVLAGGVE 120
Query: 166 SMTVNSISVVGQ------VNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLAAVE 219
M+ + G V+P E MG+T+E A+R+G++R++QD AV+
Sbjct: 121 KMSDAPMGREGVRVLDSAVDPMFEDPLGDATPGYLMGLTAERYAKRYGISREDQDEVAVK 180
Query: 220 SHRRAAAATASGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPN--TTIADLAKLKP 277
SH+ AAA +G F DEI P + V + D R + T A L P
Sbjct: 181 SHKNAAANPKAGFF-DEITPED---------VLNSP-VVADPLRRLDCSPTSDGAAALVP 229
Query: 278 AFKK-DGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGP 336
AF++ GT TAGNAS ++DGA A+LLM S A + GL L R+++ GVDPS+M GP
Sbjct: 230 AFEEVGGTVTAGNASGINDGAAALLLMSESKAKELGLAPLAAIRAYAMAGVDPSIM-DGP 288
Query: 337 AVAIPAAVKSAGLQ-IDDINLFEINE 361
A+ A+ AGL ++D+ L E E
Sbjct: 289 VAAVHDALTIAGLLALEDLGLAEKGE 314
>gnl|CDD|180563 PRK06445, PRK06445, acetyl-CoA acetyltransferase; Provisional.
Length = 394
Score = 225 bits (576), Expect = 1e-70
Identities = 117/324 (36%), Positives = 174/324 (53%), Gaps = 17/324 (5%)
Query: 49 DDVVIVAAYRTAICKAK-----RGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGT 103
+DV +V RTA + + + F + ++L A ++ +IEKT + P E+ DI+ G
Sbjct: 2 EDVYLVDFARTAFSRFRPKDPQKDVFNNIRPEELAAMLINRLIEKTGIKPEEIDDIITGC 61
Query: 104 VLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAG 163
L G R F A P +P V+RQC+S L V+ A I G+ DI IA G
Sbjct: 62 ALQVGENWLYGGRHPIFLARLPYNIPAMAVDRQCASSLTTVSIGAMEIATGMADIVIAGG 121
Query: 164 LESMTVNSISVVGQVNPKVEIFTQAR------DCLLPMGITSENVAQRFGVTRQEQDLAA 217
+E MT + + P ++ T + MG+T+E +A+ G+ R+E D +
Sbjct: 122 VEHMTRTPMGDNPHIEPNPKLLTDPKYIEYDLTTGYVMGLTAEKLAEEAGIKREEMDRWS 181
Query: 218 VESHRRAAAATASGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKP 277
+ SH+ AA A G FKDEI+P+ ++ K+ + VD +RP+T++ LAKL P
Sbjct: 182 LRSHQLAAKAIQEGYFKDEILPIEVEVEG------KKKVVDVDQSVRPDTSLEKLAKLPP 235
Query: 278 AFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPA 337
AFK DG TAGN+S ++ GA VLLM + + GL + RSF GV P++MG GP
Sbjct: 236 AFKPDGVITAGNSSPLNSGASYVLLMSKKAVKKYGLKPMAKIRSFGFAGVPPAIMGKGPV 295
Query: 338 VAIPAAVKSAGLQIDDINLFEINE 361
A A++ AGL + DI+L+EINE
Sbjct: 296 PASKKALEKAGLSVKDIDLWEINE 319
>gnl|CDD|235741 PRK06205, PRK06205, acetyl-CoA acetyltransferase; Provisional.
Length = 404
Score = 221 bits (566), Expect = 6e-69
Identities = 126/344 (36%), Positives = 181/344 (52%), Gaps = 53/344 (15%)
Query: 50 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGS 109
D VI RT + + G FKD A++L A V++A++E+T ++P+ + D++ G G
Sbjct: 3 DAVICEPVRTPVGRFG-GAFKDVPAEELAATVIRALVERTGIDPARIDDVIFGQGYPNGE 61
Query: 110 TRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTV 169
A+ R+AA AG P TVP ++R+C SGLQAV A ++ G D+ IA G ESM+
Sbjct: 62 APAIG-RVAALDAGLPVTVPGMQLDRRCGSGLQAVITAAMQVQTGAADVVIAGGAESMS- 119
Query: 170 NSISVVGQVNPKVEIFT------------QARDCL-------------LPMGI--TSENV 202
VE +T Q D L +P G+ T+EN+
Sbjct: 120 -----------NVEFYTTDMRWGVRGGGVQLHDRLARGRETAGGRRFPVPGGMIETAENL 168
Query: 203 AQRFGVTRQEQDLAAVESHRRAAAATASGKFKDEIIPVN--TKIVDPKTGVEKRVTISVD 260
+ +G++R+EQD AV SH+RA AA +G+F DEI+PV + DP + D
Sbjct: 169 RREYGISREEQDALAVRSHQRAVAAQEAGRFDDEIVPVTVPQRKGDP-------TVVDRD 221
Query: 261 DGIRPNTTIADLAKLKP---AFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILG 317
+ R +TT+ LAKL+P + T TAGNAS +D A A L+ A + GL L
Sbjct: 222 EHPRADTTLESLAKLRPIMGKQDPEATVTAGNASGQNDAAAACLVTTEDKAEELGLRPLA 281
Query: 318 VFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINE 361
S++ GV+PS MGIGP A A+ AGL +DDI+L E+NE
Sbjct: 282 RLVSWAVAGVEPSRMGIGPVPATEKALARAGLTLDDIDLIELNE 325
>gnl|CDD|168156 PRK05656, PRK05656, acetyl-CoA acetyltransferase; Provisional.
Length = 393
Score = 221 bits (564), Expect = 8e-69
Identities = 127/327 (38%), Positives = 194/327 (59%), Gaps = 26/327 (7%)
Query: 50 DVVIVAAYRTAICKAKRGGFKDTLAD----DLLAPVLKAVIEKTRLNPSEVGDIVVGTVL 105
DVVIVAA RTAI G F+ +LA+ +L A V++ ++E+T L+P++V ++++G VL
Sbjct: 3 DVVIVAATRTAI-----GSFQGSLANIPAVELGAAVIRRLLEQTGLDPAQVDEVILGQVL 57
Query: 106 APGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLE 165
G+ + R AA AG P +VP T+N+ C SGL+A+ A AI+ G ++ IA G E
Sbjct: 58 TAGAGQN-PARQAAIKAGLPHSVPAMTLNKVCGSGLKALHLAAQAIRCGDAEVIIAGGQE 116
Query: 166 SMTVNSISVVGQVNPKVEIFTQARDCLLP-----------MGITSENVAQRFGVTRQEQD 214
+M++ + G Q D ++ MGIT+EN+ +++G++R+ QD
Sbjct: 117 NMSLAPYVLPGARTGLRMGHAQLVDSMITDGLWDAFNDYHMGITAENLVEKYGISREAQD 176
Query: 215 LAAVESHRRAAAATASGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAK 274
A S ++A AA +G+F DEI P+ ++ + G + + + D+ R TT LAK
Sbjct: 177 AFAAASQQKAVAAIEAGRFDDEITPI---LIPQRKG--EPLAFATDEQPRAGTTAESLAK 231
Query: 275 LKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGI 334
LKPAFKKDG+ TAGNAS ++DGA AVLLM + A GLP+L +++ GVDP++MGI
Sbjct: 232 LKPAFKKDGSVTAGNASSLNDGAAAVLLMSAAKAKALGLPVLAKIAAYANAGVDPAIMGI 291
Query: 335 GPAVAIPAAVKSAGLQIDDINLFEINE 361
GP A + AG + +++L E NE
Sbjct: 292 GPVSATRRCLDKAGWSLAELDLIEANE 318
>gnl|CDD|131498 TIGR02445, fadA, fatty oxidation complex, beta subunit FadA. This
subunit of the FadBA complex has acetyl-CoA
C-acyltransferase (EC 2.3.1.16) activity, and is also
known as beta-ketothiolase and fatty oxidation complex,
beta subunit. This protein is almost always located
adjacent to FadB (TIGR02437). The FadBA complex is the
major complex active for beta-oxidation of fatty acids
in E. coli [Fatty acid and phospholipid metabolism,
Degradation].
Length = 385
Score = 216 bits (551), Expect = 6e-67
Identities = 128/317 (40%), Positives = 177/317 (55%), Gaps = 15/317 (4%)
Query: 50 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEK-TRLNPSEVGDIVVGTV---L 105
DVVIV RT + ++K G F++T A+DL A ++ ++ + +++P+EV DI G V L
Sbjct: 1 DVVIVDFGRTPMGRSKGGAFRNTRAEDLSAHLMSKLLARNPKVDPAEVEDIYWGCVQQTL 60
Query: 106 APGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLE 165
G A R AA A P T TVNR C S +QA+ D A AI G D+ + G+E
Sbjct: 61 EQGFNIA---RNAALLAQIPHTSAAVTVNRLCGSSMQALHDAARAIMTGDADVCLVGGVE 117
Query: 166 SMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLAAVESHRRAA 225
M + ++ V+ + MG+T+E + + G++R++QD A SH RA
Sbjct: 118 HM--GHVPMMHGVDFHPGMSLHVAKAAGMMGLTAEMLGKMHGISREQQDAFAARSHARAH 175
Query: 226 AATASGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFK-KDGT 284
AAT GKFK+EIIP D G K D+ IRP TT+ LA L+PAF K+GT
Sbjct: 176 AATQEGKFKNEIIPTQGHDAD---GFLK--QFDYDEVIRPETTVESLAALRPAFDPKNGT 230
Query: 285 TTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAV 344
TAG +S +SDGA A+L+M A + GL RS + G DPS+MG GP A A+
Sbjct: 231 VTAGTSSALSDGASAMLVMSEQRANELGLKPRARIRSMAVAGCDPSIMGYGPVPATQKAL 290
Query: 345 KSAGLQIDDINLFEINE 361
K AGL I DI++FE+NE
Sbjct: 291 KRAGLSISDIDVFELNE 307
>gnl|CDD|131483 TIGR02430, pcaF, 3-oxoadipyl-CoA thiolase. Members of this family
are designated beta-ketoadipyl CoA thiolase, an enzyme
that acts at the end of pathways for the degradation of
protocatechuate (from benzoate and related compounds)
and of phenylacetic acid.
Length = 400
Score = 205 bits (524), Expect = 8e-63
Identities = 126/333 (37%), Positives = 177/333 (53%), Gaps = 32/333 (9%)
Query: 50 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPG 108
+ I A RT I + G ADDL A +KA++ + +L+ + + D++ G G
Sbjct: 2 EAYICDAIRTPIGRYG-GSLSSVRADDLAAVPIKALLARNPQLDWAAIDDVIYGCANQAG 60
Query: 109 STRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT 168
RMAA AG P +VP TVNR C SGL A+ A AIKAG D+ IA G+ESM+
Sbjct: 61 EDNRNVARMAALLAGLPVSVPGTTVNRLCGSGLDAIGMAARAIKAGEADLLIAGGVESMS 120
Query: 169 VNSISVVGQ--------------------VNPKVEIFTQARDCLLPMGITSENVAQRFGV 208
+ V+G+ +NP + +A + M T+ENVA+ FG+
Sbjct: 121 -RAPFVMGKADSAFSRSAKIEDTTIGWRFINPLM----KALYGVDSMPETAENVAEEFGI 175
Query: 209 TRQEQDLAAVESHRRAAAATASGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTT 268
+R++QD A+ S +R AAA ASG F +EI+PV ++ K G + D+ RP TT
Sbjct: 176 SREDQDAFALRSQQRTAAAQASGFFAEEIVPV---VIPQKKGEP--TVVDQDEHPRPETT 230
Query: 269 IADLAKLKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVD 328
+ LAKLKP + DGT TAGNAS V+DGA A+LL + GL + + GV+
Sbjct: 231 LEGLAKLKPVVRPDGTVTAGNASGVNDGAAALLLASEEAVQRHGLTPRARILAAATAGVE 290
Query: 329 PSVMGIGPAVAIPAAVKSAGLQIDDINLFEINE 361
P +MGIGP A + AGL ID ++ E+NE
Sbjct: 291 PRIMGIGPVPATQKLLARAGLSIDQFDVIELNE 323
>gnl|CDD|181624 PRK09050, PRK09050, beta-ketoadipyl CoA thiolase; Validated.
Length = 401
Score = 204 bits (521), Expect = 3e-62
Identities = 128/337 (37%), Positives = 178/337 (52%), Gaps = 40/337 (11%)
Query: 50 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPG 108
+ I A RT I + G ADDL A LKA++ + ++ V D++ G G
Sbjct: 3 EAFICDAIRTPIGRYG-GALSSVRADDLGAVPLKALMARNPGVDWEAVDDVIYGCANQAG 61
Query: 109 STRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT 168
RM+A AG P +VP T+NR C SG+ AV A AIKAG ++ IA G+ESM+
Sbjct: 62 EDNRNVARMSALLAGLPVSVPGTTINRLCGSGMDAVGTAARAIKAGEAELMIAGGVESMS 121
Query: 169 VNSISVVGQ--------------------VNPKVEIFTQARDCLLPMGITSENVAQRFGV 208
+ V+G+ VNP + +A+ + M T+ENVA+ + +
Sbjct: 122 -RAPFVMGKADSAFSRQAEIFDTTIGWRFVNPLM----KAQYGVDSMPETAENVAEDYNI 176
Query: 209 TRQEQDLAAVESHRRAAAATASGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTT 268
+R +QD A+ S +RAAAA A+G +EI+PV I K V + D+ RP TT
Sbjct: 177 SRADQDAFALRSQQRAAAAQAAGFLAEEIVPV--TIPQKKGDP---VVVDRDEHPRPETT 231
Query: 269 IADLAKLKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLP----ILGVFRSFSA 324
+ LAKLKP F+ DGT TAGNAS V+DGA A+LL + A + GL ILG +
Sbjct: 232 LEALAKLKPVFRPDGTVTAGNASGVNDGAAALLLASEAAAKKHGLTPRARILG----MAT 287
Query: 325 VGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINE 361
GV+P +MGIGPA A + GL ID ++ E+NE
Sbjct: 288 AGVEPRIMGIGPAPATRKLLARLGLTIDQFDVIELNE 324
>gnl|CDD|181146 PRK07851, PRK07851, acetyl-CoA acetyltransferase; Provisional.
Length = 406
Score = 203 bits (519), Expect = 7e-62
Identities = 131/338 (38%), Positives = 182/338 (53%), Gaps = 36/338 (10%)
Query: 50 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPG 108
+ VIV+ R+ I +A +G KD DDL A +++A ++K L+P+++ D+++G L G
Sbjct: 3 EAVIVSTARSPIGRAFKGSLKDMRPDDLAAQMVRAALDKVPALDPTDIDDLMLGCGLPGG 62
Query: 109 STRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT 168
R+ A G+ +P TVNR CSS LQ AIKAG D+ I+AG+E+++
Sbjct: 63 EQGFNMARVVAVLLGYD-FLPGTTVNRYCSSSLQTTRMAFHAIKAGEGDVFISAGVETVS 121
Query: 169 V----NSISVVGQVNPK---------------VEIFTQAR-DCLLP-----MGITSENVA 203
NS S+ NP E + R D LLP MG T+ENVA
Sbjct: 122 RFAKGNSDSLPDTKNPLFAEAQARTAARAEGGAEAWHDPREDGLLPDVYIAMGQTAENVA 181
Query: 204 QRFGVTRQEQDLAAVESHRRAAAATASGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGI 263
Q G++R+EQD V S RA A A+G F+ EI PV P V +S DDG
Sbjct: 182 QLTGISREEQDEWGVRSQNRAEEAIANGFFEREITPVTL----PDGTV-----VSTDDGP 232
Query: 264 RPNTTIADLAKLKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFS 323
R TT +++LKP F+ DGT TAGNA ++DGA AV++M + A + GL L S
Sbjct: 233 RAGTTYEKVSQLKPVFRPDGTVTAGNACPLNDGAAAVVIMSDTKARELGLTPLARIVSTG 292
Query: 324 AVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINE 361
G+ P +MG+GP A A+ AG+ IDDI+L EINE
Sbjct: 293 VSGLSPEIMGLGPVEASKQALARAGMSIDDIDLVEINE 330
>gnl|CDD|181311 PRK08235, PRK08235, acetyl-CoA acetyltransferase; Provisional.
Length = 393
Score = 197 bits (503), Expect = 1e-59
Identities = 113/322 (35%), Positives = 173/322 (53%), Gaps = 20/322 (6%)
Query: 52 VIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTR 111
VIV+A RT K G KD A +L +K +E+ ++ +V ++++GTVL G +
Sbjct: 5 VIVSAARTPFGKFG-GSLKDVKATELGGIAIKEALERANVSAEDVEEVIMGTVLQGGQGQ 63
Query: 112 AMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNS 171
+ R AA AG P V TVN+ C+SGL+AV I+AG + +A G+ESM+ N+
Sbjct: 64 -IPSRQAARAAGIPWEVQTETVNKVCASGLRAVTLADQIIRAGDASVIVAGGMESMS-NA 121
Query: 172 ISVVGQVNPKVEI-FTQARDCLL-----------PMGITSENVAQRFGVTRQEQDLAAVE 219
++ + + D ++ MG+ VA+ G++R+ QD A
Sbjct: 122 PYILPGARWGYRMGDNEVIDLMVADGLTCAFSGVHMGVYGGEVAKELGISREAQDEWAYR 181
Query: 220 SHRRAAAATASGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAF 279
SH+RA +A G+F++EI+PV + + G + ++ D+ R +TTI LAKLKP F
Sbjct: 182 SHQRAVSAHEEGRFEEEIVPVT---IPQRKG--DPIVVAKDEAPRKDTTIEKLAKLKPVF 236
Query: 280 KKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVA 339
K GT TAGNA V+DGA A++LM A Q+G L + +A+ V+ P A
Sbjct: 237 DKTGTITAGNAPGVNDGAAALVLMSEDRAKQEGRKPLATILAHTAIAVEAKDFPRTPGYA 296
Query: 340 IPAAVKSAGLQIDDINLFEINE 361
I A ++ G ++DI+LFEINE
Sbjct: 297 INALLEKTGKTVEDIDLFEINE 318
>gnl|CDD|215347 PLN02644, PLN02644, acetyl-CoA C-acetyltransferase.
Length = 394
Score = 197 bits (502), Expect = 1e-59
Identities = 113/338 (33%), Positives = 181/338 (53%), Gaps = 29/338 (8%)
Query: 50 DVVIVAAYRTAICKAKRGGFKDTL----ADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVL 105
DV IV RT I GGF +L A +L + ++A +E+ ++P+ V ++ G VL
Sbjct: 2 DVCIVGVARTPI-----GGFLGSLSSLSATELGSIAIQAALERAGVDPALVQEVFFGNVL 56
Query: 106 APGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLE 165
+ +A R AA AG P + TVN+ C+SG++AV A +I+ G+ D+ +A G+E
Sbjct: 57 SANLGQA-PARQAALGAGLPPSTICTTVNKVCASGMKAVMLAAQSIQLGINDVVVAGGME 115
Query: 166 SMTVNSISVVGQVNPKVEI-FTQARDCLL-----------PMGITSENVAQRFGVTRQEQ 213
SM+ N+ + + + D +L MG+ +E A ++ ++R+EQ
Sbjct: 116 SMS-NAPKYLPEARKGSRLGHDTVVDGMLKDGLWDVYNDFGMGVCAELCADQYSISREEQ 174
Query: 214 DLAAVESHRRAAAATASGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLA 273
D A++S+ RA AA +G F EI+PV P V + D+G+ A L
Sbjct: 175 DAYAIQSYERAIAAQEAGAFAWEIVPVEV----PGGRGRPSVIVDKDEGLG-KFDPAKLR 229
Query: 274 KLKPAFKKD-GTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVM 332
KL+P+FK+D G+ TAGNAS +SDGA A++L+ A++ GL ++ R ++ P +
Sbjct: 230 KLRPSFKEDGGSVTAGNASSISDGAAALVLVSGEKALELGLQVIAKIRGYADAAQAPELF 289
Query: 333 GIGPAVAIPAAVKSAGLQIDDINLFEINEVLVPIIAAN 370
PA+AIP A+K AGL+ ++ +EINE + AN
Sbjct: 290 TTAPALAIPKALKHAGLEASQVDYYEINEAFSVVALAN 327
>gnl|CDD|181597 PRK08963, fadI, 3-ketoacyl-CoA thiolase; Reviewed.
Length = 428
Score = 191 bits (488), Expect = 4e-57
Identities = 123/360 (34%), Positives = 183/360 (50%), Gaps = 55/360 (15%)
Query: 49 DDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVL--- 105
D + IV+ RT K F A DL V+ ++ ++ ++P + +V G V+
Sbjct: 5 DRIAIVSGLRTPFAKQ-ATAFHGIPAVDLGKMVVGELLARSEIDPELIEQLVFGQVVQMP 63
Query: 106 -APGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGL 164
AP R + G +V+R C++ QAVA+VA +I AG DIGIA G
Sbjct: 64 EAPNIAREI-----VLGTGMNVHTDAYSVSRACATSFQAVANVAESIMAGTIDIGIAGGA 118
Query: 165 ESMTVNSISV----------------VGQVNPKVEIFTQ--ARDCLLP------------ 194
+S +V I V +GQ ++++F++ RD LLP
Sbjct: 119 DSSSVLPIGVSKKLARALVDLNKARTLGQ---RLKLFSRLRLRD-LLPVPPAVAEYSTGL 174
Query: 195 -MGITSENVAQRFGVTRQEQDLAAVESHRRAAAATASGKFKDEIIPVNTKIVDPKTGVEK 253
MG T+E +A+ +G++R+EQD A SH+ AA A A GK DE V T V P
Sbjct: 175 RMGDTAEQMAKTYGISREEQDALAHRSHQLAAQAWAEGKLDDE---VMTAHVPP-----Y 226
Query: 254 RVTISVDDGIRPNTTIADLAKLKPAF-KKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKG 312
+ + D+ IR ++T+ D AKL+PAF +K GT TA N++ ++DGA AVLLM S A G
Sbjct: 227 KQPLEEDNNIRGDSTLEDYAKLRPAFDRKHGTVTAANSTPLTDGAAAVLLMSESRAKALG 286
Query: 313 LPILGVFRSFSAVGVDP-SVMGIGPAVAIPAAVKSAGLQIDDINLFEINEVLVPIIAANI 371
L LG RS++ +D M +GPA A P A++ AGL + D+ L +++E AN+
Sbjct: 287 LTPLGYLRSYAFAAIDVWQDMLLGPAYATPLALERAGLTLADLTLIDMHEAFAAQTLANL 346
>gnl|CDD|168632 PRK06633, PRK06633, acetyl-CoA acetyltransferase; Provisional.
Length = 392
Score = 186 bits (472), Expect = 3e-55
Identities = 117/341 (34%), Positives = 191/341 (56%), Gaps = 35/341 (10%)
Query: 51 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGST 110
V I A RTA + G T A L A ++K +++ ++++P+ V ++++G V+ GS
Sbjct: 5 VYITHAKRTAF-GSFMGSLSTTPAPMLAAHLIKDILQNSKIDPALVNEVILGQVITGGSG 63
Query: 111 RAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTV- 169
+ R +AG P+ VP T+N+ C SGL++VA A +I G +I IA G E+M++
Sbjct: 64 QN-PARQTLIHAGIPKEVPGYTINKVCGSGLKSVALAANSIMTGDNEIVIAGGQENMSLG 122
Query: 170 ------------NSISVVG--QVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDL 215
I +V Q + ++F+ + MGIT+EN++++F ++RQEQD
Sbjct: 123 MHGSYIRAGAKFGDIKMVDLMQYDGLTDVFSG-----VFMGITAENISKQFNISRQEQDE 177
Query: 216 AAVESHRRAAAATASGKFKDEIIPVNTKIVDPKTGVEKRVT--ISVDDGIRPNTTIADLA 273
A+ SH++AA A +G FKDEI+P+ I K+ T D+ +RP+T++ L+
Sbjct: 178 FALSSHKKAAKAQLAGIFKDEILPIEVTI--------KKTTSLFDHDETVRPDTSLEILS 229
Query: 274 KLKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMG 333
KL+PAF K+G TAGNAS ++DGA ++++ + L L S+++ GVDPS+MG
Sbjct: 230 KLRPAFDKNGVVTAGNASSINDGAACLMVVSEEALKKHNLTPLARIVSYASAGVDPSIMG 289
Query: 334 IGPAVAIPAAVKSAGLQIDDINLFEINEVLVPIIAANIMVN 374
P A A+ AG ++D+ + E+NE A +I VN
Sbjct: 290 TAPVPASQKALSKAGWSVNDLEVIEVNEAFA---AQSIYVN 327
>gnl|CDD|183998 PRK13359, PRK13359, beta-ketoadipyl CoA thiolase; Provisional.
Length = 400
Score = 183 bits (465), Expect = 4e-54
Identities = 117/333 (35%), Positives = 166/333 (49%), Gaps = 33/333 (9%)
Query: 50 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTR-LNPSEVGDIVVGTVLAPG 108
+ I A RT I + G ADDL A LKA++E+ ++ + + D++ G G
Sbjct: 3 EAFICDAIRTPIGRYG-GALSSVRADDLGAVPLKALVERNPDVDWAAIDDVIYGCANQAG 61
Query: 109 STRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT 168
RM+ AG P VP T+NR C SG+ AV A AIK+G + IA G+ESM+
Sbjct: 62 EDNRNVARMSLLLAGLPHGVPGSTINRLCGSGMDAVGVAARAIKSGEAALMIAGGVESMS 121
Query: 169 VNSISVVGQ--------------------VNPKVEIFTQARDCLLPMGITSENVAQRFGV 208
+ V+G+ VNP + + + M T+ENVA + V
Sbjct: 122 -RAPFVMGKAESAFSRQAEIFDTTIGWRFVNPLM----KQLYGVDSMPETAENVATDYNV 176
Query: 209 TRQEQDLAAVESHRRAAAATASGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTT 268
+R +QD A+ S ++AA A A G EI+PV + K G V+ D+ R TT
Sbjct: 177 SRADQDAFALRSQQKAARAQADGTLAQEIVPVT---IPQKKGDPLVVS--RDEHPRE-TT 230
Query: 269 IADLAKLKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVD 328
+ LAKLK + DGT TAGNAS V+DGA A+LL + A + GL + GV+
Sbjct: 231 LEALAKLKGVVRPDGTVTAGNASGVNDGACALLLASEAAARRHGLKPRARVLGIATAGVE 290
Query: 329 PSVMGIGPAVAIPAAVKSAGLQIDDINLFEINE 361
P VMGIGPA A + G+ +D ++ E+NE
Sbjct: 291 PRVMGIGPAPATQKLLARLGMTLDQFDVIELNE 323
>gnl|CDD|181242 PRK08131, PRK08131, acetyl-CoA acetyltransferase; Provisional.
Length = 401
Score = 181 bits (461), Expect = 2e-53
Identities = 115/333 (34%), Positives = 169/333 (50%), Gaps = 25/333 (7%)
Query: 50 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGS 109
D I R+ + G DDL A V++ ++EK+ ++ D+++G G
Sbjct: 3 DAYIYDGLRSPFGR-HAGALASVRPDDLAATVIRRLLEKSGFPGDDIEDVILGCTNQAGE 61
Query: 110 TRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTV 169
R A AG P TVP +TVNR C+SGL AV D A AI G D+ +A G+ESM+
Sbjct: 62 DSRNVARNALLLAGLPVTVPGQTVNRLCASGLAAVIDAARAITCGEGDLYLAGGVESMSR 121
Query: 170 NSI-----------------SVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQE 212
+ +G P +I Q + +P T +NVA FG++R++
Sbjct: 122 APFVMGKAESAFSRDAKVFDTTIGARFPNPKIVAQYGNDSMPE--TGDNVAAEFGISRED 179
Query: 213 QDLAAVESHRRAAAATASGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADL 272
D A +S + AA G F DEI P+ ++ + K V D+ RP++T+ L
Sbjct: 180 ADRFAAQSQAKYQAAKEEGFFADEITPI--EVPQGRKLPPKLVA--EDEHPRPSSTVEAL 235
Query: 273 AKLKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVM 332
KLKP F+ G TAGNAS ++DGA A+L+ R+ + GL + S +A GV+P +M
Sbjct: 236 TKLKPLFE-GGVVTAGNASGINDGAAALLIGSRAAGEKYGLKPMARILSSAAAGVEPRIM 294
Query: 333 GIGPAVAIPAAVKSAGLQIDDINLFEINEVLVP 365
GIGP AI A+ AGL +DD+++ EINE
Sbjct: 295 GIGPVEAIKKALARAGLTLDDMDIIEINEAFAS 327
>gnl|CDD|181123 PRK07801, PRK07801, acetyl-CoA acetyltransferase; Provisional.
Length = 382
Score = 178 bits (453), Expect = 2e-52
Identities = 116/327 (35%), Positives = 170/327 (51%), Gaps = 27/327 (8%)
Query: 53 IVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRA 112
IV A RT + K ++GG DL A VLK ++++T ++P+ V D++ G V G
Sbjct: 6 IVDAVRTPVGK-RKGGLAGVHPADLGAHVLKGLVDRTGIDPAAVDDVIFGCVDTIGPQAG 64
Query: 113 MECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSI 172
R + AG PE VP TV+RQC S QA+ A A+ +G D+ +A G+++M+ I
Sbjct: 65 NIARTSWLAAGLPEEVPGVTVDRQCGSSQQAIHFAAQAVMSGTQDLVVAGGVQNMSQIPI 124
Query: 173 S---VVGQVNPKVEIFTQARDCLLPMG-------ITSENVAQRFGVTRQEQDLAAVESHR 222
S G+ F +++ L G +E +A+++G++R+E + A+ESHR
Sbjct: 125 SSAMTAGEQLGFTSPFAESKGWLHRYGDQEVSQFRGAELIAEKWGISREEMERFALESHR 184
Query: 223 RAAAATASGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKKD 282
RA AA +G+F +EI+PV GV VD+G R T++ +A LKP +
Sbjct: 185 RAFAAIRAGRFDNEIVPVG--------GVT------VDEGPR-ETSLEKMAGLKP-LVEG 228
Query: 283 GTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPA 342
G TA ASQ+SDGA AVLL + GL S G DP M P A
Sbjct: 229 GRLTAAVASQISDGASAVLLASERAVKRHGLTPRARIHHLSVRGDDPVFMLTAPIPATRY 288
Query: 343 AVKSAGLQIDDINLFEINEVLVPIIAA 369
A++ GL IDDI++ EINE P++ A
Sbjct: 289 ALEKTGLSIDDIDVVEINEAFAPVVLA 315
>gnl|CDD|236197 PRK08242, PRK08242, acetyl-CoA acetyltransferase; Validated.
Length = 402
Score = 178 bits (454), Expect = 2e-52
Identities = 116/342 (33%), Positives = 170/342 (49%), Gaps = 47/342 (13%)
Query: 50 DVVIVAAYRTAICKAKRGG-FKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPG 108
+ I A RT K K+ G + L A +L+A+ ++ L+ + V D+V+G V G
Sbjct: 3 EAYIYDAVRTPRGKGKKDGSLHEVKPVRLAAGLLEALRDRNGLDTAAVDDVVLGCVTPVG 62
Query: 109 STRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT 168
A R A AG PETVP +NR C+SGL+AV A +++G D+ IA G+ESM
Sbjct: 63 DQGADIARTAVLAAGLPETVPGVQINRFCASGLEAVNLAAAKVRSGWDDLVIAGGVESM- 121
Query: 169 VNSISVVGQ--------VNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLAAVES 220
S V ++P T +P GI+++ +A ++G +R++ D AVES
Sbjct: 122 ----SRVPMGSDGGAWAMDPSTNFPTY----FVPQGISADLIATKYGFSREDVDAYAVES 173
Query: 221 HRRAAAATASGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFK 280
+RAAAA A G F ++PV K + T ++ D+ +RP TT+ LAKLKP+F
Sbjct: 174 QQRAAAAWAEGYFAKSVVPV--KDQNGLTILDH------DEHMRPGTTMESLAKLKPSFA 225
Query: 281 KDGTT---------------------TAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVF 319
G AGN+S + DGA AVL+ GL
Sbjct: 226 MMGEMGGFDAVALQKYPEVERINHVHHAGNSSGIVDGAAAVLIGSEEAGKALGLKPRARI 285
Query: 320 RSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINE 361
+ + +G DP++M GP A A+ AGL +DDI+LFE+NE
Sbjct: 286 VATATIGSDPTIMLTGPVPATRKALAKAGLTVDDIDLFELNE 327
>gnl|CDD|181145 PRK07850, PRK07850, acetyl-CoA acetyltransferase; Provisional.
Length = 387
Score = 176 bits (448), Expect = 1e-51
Identities = 113/314 (35%), Positives = 162/314 (51%), Gaps = 10/314 (3%)
Query: 52 VIVAAYRTAICKAKRGGFKDTL-ADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGST 110
VIV A RT I KR G+ L A +LL V +AV+++ ++P +V ++ G V G
Sbjct: 5 VIVEAVRTPI--GKRNGWLSGLHAAELLGAVQRAVLDRAGIDPGDVEQVIGGCVTQAGEQ 62
Query: 111 RAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVN 170
R A +AG P V T++ QC S QA VA I AG D+GIA G+E+M+
Sbjct: 63 SNNITRTAWLHAGLPYHVGATTIDCQCGSAQQANHLVAGLIAAGAIDVGIACGVEAMS-- 120
Query: 171 SISVVGQVNPKV-EIFTQARDCLLPMGITS-ENVAQRFGVTRQEQDLAAVESHRRAAAAT 228
+ + P + D +P + E +A+R G+TR++ D + S RRAA A
Sbjct: 121 RVPLGANAGPGRGLPRPDSWDIDMPNQFEAAERIAKRRGITREDVDAFGLRSQRRAAQAW 180
Query: 229 ASGKFKDEIIPVNTKIVDP-KTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKKDGTTTA 287
A G+F EI PV ++D + ++ D G+R +TT+ LA LKP + G TA
Sbjct: 181 AEGRFDREISPVQAPVLDEEGQPTGETRLVTRDQGLR-DTTMEGLAGLKPVL-EGGIHTA 238
Query: 288 GNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSA 347
G +SQ+SDGA AVL M A GL + + VG +P GP A ++ A
Sbjct: 239 GTSSQISDGAAAVLWMDEDRARALGLRPRARIVAQALVGAEPYYHLDGPVQATAKVLEKA 298
Query: 348 GLQIDDINLFEINE 361
G++I DI+L EINE
Sbjct: 299 GMKIGDIDLVEINE 312
>gnl|CDD|180595 PRK06504, PRK06504, acetyl-CoA acetyltransferase; Provisional.
Length = 390
Score = 176 bits (448), Expect = 1e-51
Identities = 114/342 (33%), Positives = 179/342 (52%), Gaps = 49/342 (14%)
Query: 53 IVAAYRTAICKAKRGGFKDTLAD----DLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPG 108
IVAA RTA ++GG LA DL A VL A+++++ +P+ + D+++G V G
Sbjct: 6 IVAAARTA--GGRKGG---RLAGWHPADLAAQVLDALVDRSGADPALIEDVIMGCVSQVG 60
Query: 109 STRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT 168
R A + PE+VP +++RQC S QA+ A A+ +G DI IAAG+ESMT
Sbjct: 61 EQATNVARNAVLASKLPESVPGTSIDRQCGSSQQALHFAAQAVMSGTMDIVIAAGVESMT 120
Query: 169 VNSISVVGQV----------NPKVE------IFTQARDCLLPMGITSENVAQRFGVTRQE 212
+ + +P +E F+Q G +E +A+++G+++ +
Sbjct: 121 RVPMGSPSTLPAKNGLGHYKSPGMEERYPGIQFSQF------TG--AEMMAKKYGLSKDQ 172
Query: 213 QDLAAVESHRRAAAATASGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADL 272
D A++SH+RA AAT +GKFK EI+P+ D + VD+GIR + T+ +
Sbjct: 173 LDEFALQSHQRAIAATQAGKFKAEIVPLEITRADGSGEMHT-----VDEGIRFDATLEGI 227
Query: 273 AKLKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGV-----FRSFSAVGV 327
A +K + G TA ASQ+ DGA V+++ ++GL LGV + +G
Sbjct: 228 AGVKL-IAEGGRLTAATASQICDGASGVMVVN-----ERGLKALGVKPLARIHHMTVIGG 281
Query: 328 DPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEVLVPIIAA 369
DP +M P A A+K AG++IDDI+L+E+NE + A
Sbjct: 282 DPVIMLEAPLPATERALKKAGMKIDDIDLYEVNEAFASVPLA 323
>gnl|CDD|180659 PRK06690, PRK06690, acetyl-CoA acetyltransferase; Provisional.
Length = 361
Score = 173 bits (439), Expect = 1e-50
Identities = 106/320 (33%), Positives = 163/320 (50%), Gaps = 32/320 (10%)
Query: 52 VIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTR 111
VIV A RT I K K G KD L AP+L + ++ E+ D+++G V+ PG
Sbjct: 4 VIVEAKRTPIGK-KNGMLKDYEVQQLAAPLLTFL---SKGMEREIDDVILGNVVGPGGNV 59
Query: 112 AMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNS 171
A R++A AG +P T++RQC +GL+A+ I+ G IA G+ES + +
Sbjct: 60 A---RLSALEAGLGLHIPGVTIDRQCGAGLEAIRTACHFIQGGAGKCYIAGGVESTSTSP 116
Query: 172 ISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLAAVESHRRAAAATASG 231
+ +P+ I MG+ +E VA+R+ +TR+ QD A S++R A G
Sbjct: 117 FQNRARFSPET-IGDPD------MGVAAEYVAERYNITREMQDEYACLSYKRTLQALEKG 169
Query: 232 KFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADL-AKLKPAFKKDGTTTAGNA 290
+EI+ N G+ D+ I+ + + KPAF +GT TAGN+
Sbjct: 170 YIHEEILSFN--------GLL-------DESIKKEMNYERIIKRTKPAFLHNGTVTAGNS 214
Query: 291 SQVSDGAGAVLLMKRSLAVQKGL-PILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGL 349
V+DGA AVL+M+ A + G P+L RS + VGVDP++ G GP A+ + +
Sbjct: 215 CGVNDGACAVLVMEEGQARKLGYKPVLRFVRS-AVVGVDPNLPGTGPIFAVNKLLNEMNM 273
Query: 350 QIDDINLFEINEVLVPIIAA 369
+++DI+ FEINE + A
Sbjct: 274 KVEDIDYFEINEAFASKVVA 293
>gnl|CDD|181265 PRK08170, PRK08170, acetyl-CoA acetyltransferase; Provisional.
Length = 426
Score = 173 bits (441), Expect = 3e-50
Identities = 117/347 (33%), Positives = 170/347 (48%), Gaps = 51/347 (14%)
Query: 50 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGS 109
V IV RT KA RGG A DL +A++ + P ++ ++++G P
Sbjct: 4 PVYIVDGARTPFLKA-RGGPGPFSASDLAVAAGRALLNRQPFAPDDLDEVILGCA-MPSP 61
Query: 110 TRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT- 168
A R+ A G E VP TV R C+SG+QA+ A I G D+ +A G+E+M+
Sbjct: 62 DEANIARVVALRLGCGEKVPAWTVQRNCASGMQALDSAAANIALGRADLVLAGGVEAMSH 121
Query: 169 ---------------VNSISVVGQVNPKVEIFTQARD-----------------CLLPMG 196
+ +GQ K+ + R L MG
Sbjct: 122 APLLFSEKMVRWLAGWYAAKSIGQ---KLAALGKLRPSYLAPVIGLLRGLTDPVVGLNMG 178
Query: 197 ITSENVAQRFGVTRQEQDLAAVESHRRAAAATASGKFKDEIIPVNTKIVDPKTGVEKRVT 256
T+E +A RFG+TR++ D A SH+R AAA A G+ K E++P + D
Sbjct: 179 QTAEVLAHRFGITREQMDAYAARSHQRLAAAQAEGRLK-EVVP----LFDRDGKFYDH-- 231
Query: 257 ISVDDGIRPNTTIADLAKLKPAF-KKDGTTTAGNASQVSDGAGAVLLMKRSLAVQK-GLP 314
DDG+RP++++ LAKLKP F + G TAGN+SQ++DGA LL+ AV+K GLP
Sbjct: 232 ---DDGVRPDSSMEKLAKLKPFFDRPYGRVTAGNSSQITDGA-CWLLLASEEAVKKYGLP 287
Query: 315 ILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINE 361
LG +DPS MG+GP A ++ GL ++D++L+EINE
Sbjct: 288 PLGRIVDSQWAALDPSQMGLGPVHAATPLLQRHGLTLEDLDLWEINE 334
>gnl|CDD|180775 PRK06954, PRK06954, acetyl-CoA acetyltransferase; Provisional.
Length = 397
Score = 161 bits (408), Expect = 9e-46
Identities = 115/335 (34%), Positives = 161/335 (48%), Gaps = 25/335 (7%)
Query: 49 DDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPG 108
D +VI +A RT + A +G F A L A + A +E+ L P ++ ++V+G VL G
Sbjct: 7 DPIVIASAARTPMA-AFQGEFASLTAPQLGAAAIAAAVERAGLKPEQIDEVVMGCVLPAG 65
Query: 109 STRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT 168
+A R AA AG P +V TVN+ C SG++A + AG D+ +A G+ESMT
Sbjct: 66 QGQA-PARQAALGAGLPLSVGCTTVNKMCGSGMRAAMFAHDMLVAGSVDVIVAGGMESMT 124
Query: 169 VNSISVV-----------GQVNPKVEI--FTQARDCLLPMGITSENVAQRFGVTRQEQDL 215
N+ ++ GQV + + A D MG +E A +G TR+ QD
Sbjct: 125 -NAPYLLPKARGGMRMGHGQVLDHMFLDGLEDAYDKGRLMGTFAEECAGEYGFTREAQDA 183
Query: 216 AAVESHRRAAAATASGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKL 275
A+ES RA A G F EI PV V K G I D+ + L
Sbjct: 184 FAIESLARAKRANEDGSFAWEIAPVT---VAGKKG---DTVIDRDEQPF-KANPEKIPTL 236
Query: 276 KPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIG 335
KPAF K GT TA N+S +SDGA A+++M+ S A + GL L S PS
Sbjct: 237 KPAFSKTGTVTAANSSSISDGAAALVMMRASTAKRLGLAPLARVVGHSTFAQAPSKFTTA 296
Query: 336 PAVAIPAAVKSAGLQIDDINLFEINE--VLVPIIA 368
P AI + G + +++LFEINE +V + A
Sbjct: 297 PVGAIRKLFEKNGWRAAEVDLFEINEAFAVVTMAA 331
>gnl|CDD|102340 PRK06366, PRK06366, acetyl-CoA acetyltransferase; Provisional.
Length = 388
Score = 159 bits (402), Expect = 4e-45
Identities = 109/327 (33%), Positives = 167/327 (51%), Gaps = 32/327 (9%)
Query: 50 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGS 109
DV IV+A RTAI K R F A L +KAVI+ +L+P+ V ++++G V+ G
Sbjct: 3 DVYIVSAKRTAIGKFGRS-FSKIKAPQLGGAAIKAVIDDAKLDPALVQEVIMGNVIQAGV 61
Query: 110 TRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTV 169
+ AA++AG P V TVN C+SG+ AV A I G D+ IA G+E+M+
Sbjct: 62 GQN-PAGQAAYHAGLPFGVTKYTVNVVCASGMLAVESAAREIMLGERDLVIAGGMENMSN 120
Query: 170 NSISVVGQV--NPKVEIFTQAR--DCLLP-----------MGITSENVAQRFGVTRQEQD 214
+ + PK + + D +L MG+++E A+++G+TR+ D
Sbjct: 121 APFLLPSDLRWGPKHLLHKNYKIDDAMLVDGLIDAFYFEHMGVSAERTARKYGITREMAD 180
Query: 215 LAAVESHRRAAAATASGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAK 274
+V+S+ RA AT SG+F++EI+P N + D+GIR TT+ DLAK
Sbjct: 181 EYSVQSYERAIRATESGEFRNEIVPFND--------------LDRDEGIR-KTTMEDLAK 225
Query: 275 LKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGI 334
L PAF K+G TAGN++Q+SDG A+++ + GL + + + +DP
Sbjct: 226 LPPAFDKNGILTAGNSAQLSDGGSALVMASEKAINEYGLKPIARITGYESASLDPLDFVE 285
Query: 335 GPAVAIPAAVKSAGLQIDDINLFEINE 361
P A ++ ID +L E NE
Sbjct: 286 APIPATRKLLEKQNKSIDYYDLVEHNE 312
>gnl|CDD|131499 TIGR02446, FadI, fatty oxidation complex, beta subunit FadI. This
subunit of the FadJI complex has acetyl-CoA
C-acyltransferase (EC 2.3.1.16) activity, and is also
known as beta-ketothiolase and fatty oxidation complex,
beta subunit, and YfcY. This protein is almost always
located adjacent to FadJ (TIGR02440). The FadJI complex
is needed for anaerobic beta-oxidation of short-chain
fatty acids in E. coli [Fatty acid and phospholipid
metabolism, Degradation].
Length = 430
Score = 151 bits (383), Expect = 7e-42
Identities = 110/357 (30%), Positives = 178/357 (49%), Gaps = 49/357 (13%)
Query: 49 DDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVL--- 105
+ + IVA RT + + F A DL V+ ++ ++ ++P + +V G V+
Sbjct: 7 ERIAIVAGLRTPFAR-QATAFHGIPAVDLGKMVVSELLARSEIDPKLIEQLVFGQVVQMP 65
Query: 106 -APGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGL 164
AP R + G +V R C++ Q+ +VA +I AG DIGIA G
Sbjct: 66 EAPNIAREI-----VLGTGMNVHTDAYSVTRACATSFQSAVNVAESIMAGAIDIGIAGGA 120
Query: 165 ESMTVNSISVVGQV-------------NPKVEIFTQ--ARDCL------------LPMGI 197
+S +V I V ++ K+++F++ +D + L MG
Sbjct: 121 DSSSVLPIGVSKKLAASLVDLNKARTLGQKLKVFSRLGLKDLMPVPPAVAEYSTGLSMGQ 180
Query: 198 TSENVAQRFGVTRQEQDLAAVESHRRAAAATASGKFKDEIIPVNTKIVDPKTGVEKRVTI 257
T+E +A+ +G+TR EQD A SH A+ A GK E++ T P + I
Sbjct: 181 TAEQMAKTYGITRAEQDALAHRSHTLASQAWRDGKLAGEVM---TAFPPP-----YKQWI 232
Query: 258 SVDDGIRPNTTIADLAKLKPAF-KKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPIL 316
+ D+ IR N+T+A AKL+PAF +K G+ TA N++ ++DGA AV+LM+ A + G+ L
Sbjct: 233 AEDNNIRHNSTLAGYAKLRPAFDRKHGSVTAANSTPLTDGAAAVILMREGRAKELGMEPL 292
Query: 317 GVFRS--FSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEVLVPIIAANI 371
G RS F+A+ V M +GP+ A P A++ AGL + D+ L +++E AN+
Sbjct: 293 GYIRSYAFTAIDVW-QDMLMGPSYATPLALQRAGLALSDLTLIDMHEAFAAQTLANV 348
>gnl|CDD|235675 PRK06025, PRK06025, acetyl-CoA acetyltransferase; Provisional.
Length = 417
Score = 144 bits (366), Expect = 2e-39
Identities = 105/348 (30%), Positives = 151/348 (43%), Gaps = 44/348 (12%)
Query: 50 DVVIVAAYRT--AICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAP 107
+ I+ A RT I K +G L A VLKA+ E+ LN ++V DI+ T
Sbjct: 3 EAYIIDAVRTPRGIGKVGKGALAHLHPQHLAATVLKALAERNGLNTADVDDIIWSTSSQR 62
Query: 108 GSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESM 167
G RMAA AG+ T++R C G+ +V A I +G+ D+ IA G E M
Sbjct: 63 GKQGGDLGRMAALDAGYDIKASGVTLDRFCGGGITSVNLAAAQIMSGMEDLVIAGGTEMM 122
Query: 168 TVNSISVVGQVNPKVEIFT--------QARDCLLPMGITSENVAQRFGVTRQEQDLAAVE 219
+ + + +A G+ + +A G+TR+ D +E
Sbjct: 123 SYTAAMAAEDMAAGKPPLGMGSGNLRLRALHPQSHQGVCGDAIATMEGITREALDALGLE 182
Query: 220 SHRRAAAATASGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAF 279
S RRAA A G+F ++PV + V + ++ RP TT LA LKPAF
Sbjct: 183 SQRRAARAIKEGRFDKSLVPV----YRD----DGSVALDHEEFPRPQTTAEGLAALKPAF 234
Query: 280 KK-------DGTTT-------------------AGNASQVSDGAGAVLLMKRSLAVQKGL 313
D TT AGN+S V DGA A+LL ++ A + GL
Sbjct: 235 TAIADYPLDDKGTTYRGLINQKYPDLEIKHVHHAGNSSGVVDGAAALLLASKAYAEKHGL 294
Query: 314 PILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINE 361
+ + +G DP++M P A + AGL DDI+L+EINE
Sbjct: 295 KPRARIVAMANMGDDPTLMLNAPVPAAKKVLAKAGLTKDDIDLWEINE 342
>gnl|CDD|236440 PRK09268, PRK09268, acetyl-CoA acetyltransferase; Provisional.
Length = 427
Score = 142 bits (360), Expect = 1e-38
Identities = 100/350 (28%), Positives = 156/350 (44%), Gaps = 59/350 (16%)
Query: 50 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGS 109
V I+ R ++ G + D D+L L ++++ L +G++V G VL
Sbjct: 8 RVAILGGNRIPFARSN-GAYADASNQDMLTAALDGLVDRFGLQGERLGEVVAGAVLKHSR 66
Query: 110 ----TRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLE 165
TR EC + + + P T P + + C +GL+A VA I G D GIA G++
Sbjct: 67 DFNLTR--ECVLGSALS--PYT-PAYDLQQACGTGLEAAILVANKIALGQIDSGIAGGVD 121
Query: 166 SM-----------------------TVNSISVVGQVNPKVEIFTQARD----CLLPMGIT 198
+ T + + +G++ PK R+ L MG
Sbjct: 122 TTSDAPIAVNEGLRKILLELNRAKTTGDRLKALGKLRPKHLAPEIPRNGEPRTGLSMGEH 181
Query: 199 SENVAQRFGVTRQEQDLAAVESHRRAAAATASGKFKDEIIPVNTKIVDPKTGVEKRVTIS 258
+ A+ +G++R+ QD A SH+ AAA G F D I P G+ +
Sbjct: 182 AAITAKEWGISREAQDELAAASHQNLAAAYDRGFFDDLITPFL--------GLTR----- 228
Query: 259 VDDGIRPNTTIADLAKLKPAFKK--DGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPIL 316
D+ +RP++++ LAKLKP F K T TAGN++ ++DGA VLL A + GLP+L
Sbjct: 229 -DNNLRPDSSLEKLAKLKPVFGKGGRATMTAGNSTPLTDGASVVLLASEEWAAEHGLPVL 287
Query: 317 GVFRSFSAVGVDPSVMG-----IGPAVAIPAAVKSAGLQIDDINLFEINE 361
VD V G + PA A+P + GL + D + +EI+E
Sbjct: 288 AYLVDAETAAVD-FVHGKEGLLMAPAYAVPRLLARNGLTLQDFDFYEIHE 336
>gnl|CDD|238422 cd00826, nondecarbox_cond_enzymes, nondecarboxylating condensing
enzymes; In general, thiolases catalyze the reversible
thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and
acetyl-CoA, a 2-step reaction involving a covalent
intermediate formed with a catalytic cysteine. There are
2 functional different classes: thiolase-I
(3-ketoacyl-CoA thiolase) and thiolase-II
(acetoacetyl-CoA thiolase). Thiolase-I can cleave longer
fatty acid molecules and plays an important role in the
beta-oxidative degradation of fatty acids. Thiolase-II
has a high substrate specificity. Although it can cleave
acetoacyl-CoA, its main function is the synthesis of
acetoacyl-CoA from two molecules of acetyl-CoA, which
gives it importance in several biosynthetic pathways.
Length = 393
Score = 122 bits (306), Expect = 2e-31
Identities = 85/323 (26%), Positives = 132/323 (40%), Gaps = 42/323 (13%)
Query: 54 VAAYRTAICK--AKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTR 111
A TA K + G + LA + A + A +E + V + +G VL
Sbjct: 1 AGAAMTAFGKFGGENGADANDLAHEAGAKAIAAALEPAGVAAGAVEEACLGQVL-GAGEG 59
Query: 112 AMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNS 171
+ AA +AG + P +N C SGL+A+A I G + +A G E M ++
Sbjct: 60 QNCAQQAAMHAGGLQEAPAIGMNNLCGSGLRALALAMQLIAGGDANCILAGGFEKMETSA 119
Query: 172 ISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLAAVESHRRAAAATASG 231
+ + + V I R D A+ A AA G
Sbjct: 120 ENNAKEKHIDVLINKYG--------------------MRACPDAFALAGQAGAEAAEKDG 159
Query: 232 KFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIR--PNTTIADLAKLKPAFKKDGTTTAGN 289
+FKDE K G + + D+ I+ ++ ++AKL+PAF K+ TAGN
Sbjct: 160 RFKDEFAKFGVK------GRKGDIHSDADEYIQFGDEASLDEIAKLRPAFDKEDFLTAGN 213
Query: 290 ASQVSDGAGAVLLMKRSLAVQKGLPI-------LGVFRSFSAVGVDPS----VMGIGPAV 338
A ++DGA A +LM + A + GL L + ++ D V G GP
Sbjct: 214 ACGLNDGAAAAILMSEAEAQKHGLQSKAREIQALEMITDMASTFEDKKVIKMVGGDGPIE 273
Query: 339 AIPAAVKSAGLQIDDINLFEINE 361
A A++ AGL I D++L E ++
Sbjct: 274 AARKALEKAGLGIGDLDLIEAHD 296
>gnl|CDD|145779 pfam02803, Thiolase_C, Thiolase, C-terminal domain. Thiolase is
reported to be structurally related to beta-ketoacyl
synthase (pfam00109), and also chalcone synthase.
Length = 123
Score = 74.2 bits (183), Expect = 2e-16
Identities = 32/59 (54%), Positives = 40/59 (67%)
Query: 313 LPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEVLVPIIAANI 371
L L RS++ VGVDP++MGIGPA AIP A+K AGL ++DI+LFEINE A
Sbjct: 1 LKPLARIRSYATVGVDPAIMGIGPAYAIPKALKKAGLTVNDIDLFEINEAFAAQALAVA 59
>gnl|CDD|238425 cd00829, SCP-x_thiolase, Thiolase domain associated with sterol
carrier protein (SCP)-x isoform and related proteins;
SCP-2 has multiple roles in intracellular lipid
circulation and metabolism. The N-terminal presequence
in the SCP-x isoform represents a peroxisomal
3-ketacyl-Coa thiolase specific for branched-chain acyl
CoAs, which is proteolytically cleaved from the sterol
carrier protein.
Length = 375
Score = 56.9 bits (138), Expect = 5e-09
Identities = 72/303 (23%), Positives = 109/303 (35%), Gaps = 63/303 (20%)
Query: 76 DLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNR 135
+L A +A ++ L P+++ +VVG G ++ + A Y G R V
Sbjct: 18 ELAAEAARAALDDAGLEPADIDAVVVGNAAG-GRFQSFPGALIAEYLGLLGKPATR-VEA 75
Query: 136 QCSSGLQAVADVATAIKAGLYDIGIAAGLESMTV--NSISVVGQVNPKVEIFTQARDCLL 193
+SG AV A AI +GL D+ + G E M+ G+ + + L
Sbjct: 76 AGASGSAAVRAAAAAIASGLADVVLVVGAEKMSDVPTGDEAGGRASDLEWEGPEPPGGLT 135
Query: 194 PMGITSENVAQR----FGVTRQEQDLAAV-ESHRRAAAATASGKFKDEIIPV----NTKI 244
P + + A+R +G TR +DLA V + R AA +F+ I + I
Sbjct: 136 PPALYA-LAARRYMHRYGTTR--EDLAKVAVKNHRNAARNPYAQFRKPITVEDVLNSRMI 192
Query: 245 VDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKKDGTTTAGNASQVSDGAGAVLLMK 304
DP + VSDGA AV+L
Sbjct: 193 ADP-------------------------------------LRLLDCCPVSDGAAAVVLAS 215
Query: 305 RSLAVQKGLP---ILGV-----FRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINL 356
A + ILGV S S S+ +A A K AG+ DDI++
Sbjct: 216 EERARELTDRPVWILGVGAASDTPSLSERDDFLSLDAA--RLAARRAYKMAGITPDDIDV 273
Query: 357 FEI 359
E+
Sbjct: 274 AEL 276
>gnl|CDD|183606 PRK12578, PRK12578, acetyl-CoA acetyltransferase; Provisional.
Length = 385
Score = 49.5 bits (118), Expect = 1e-06
Identities = 44/178 (24%), Positives = 80/178 (44%), Gaps = 29/178 (16%)
Query: 64 AKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMA---AF 120
+K G D +L +K + ++ +++ +VVG+ + R +E A A
Sbjct: 11 SKFGRRDDVSVQELAWESIKEALNDAGVSQTDIELVVVGST----AYRGIELYPAPIVAE 66
Query: 121 YAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESM----TVNSISVVG 176
Y+G VPLR V C++GL A TA+ +GL D+ IA G++ M T S+++ G
Sbjct: 67 YSGLTGKVPLR-VEAMCATGLAASLTAYTAVASGLVDMAIAVGVDKMTEVDTSTSLAIGG 125
Query: 177 QVNPKVEIFTQARDCLLPMGIT---------SENVAQRFGVTRQEQDLAAVESHRRAA 225
+ + G T + ++A +G T ++ L +V++H+ A
Sbjct: 126 RGGNYQWEYHF-------YGTTFPTYYALYATRHMA-VYGTTEEQMALVSVKAHKYGA 175
>gnl|CDD|235688 PRK06064, PRK06064, acetyl-CoA acetyltransferase; Provisional.
Length = 389
Score = 45.3 bits (108), Expect = 3e-05
Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 7/120 (5%)
Query: 50 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPG- 108
DV I+ +T K G D DL +E ++ ++ + VG + A
Sbjct: 3 DVAIIGVGQT-----KFGELWDVSLRDLAVEAGLEALEDAGIDGKDIDAMYVGNMSAGLF 57
Query: 109 STRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT 168
++ + A YAG +P V C+SG A+ A+ +G D+ +AAG+E MT
Sbjct: 58 VSQEHIAALIADYAGLAP-IPATRVEAACASGGAALRQAYLAVASGEADVVLAAGVEKMT 116
>gnl|CDD|238201 cd00327, cond_enzymes, Condensing enzymes; Family of enzymes that
catalyze a (decarboxylating or non-decarboxylating)
Claisen-like condensation reaction. Members are share
strong structural similarity, and are involved in the
synthesis and degradation of fatty acids, and the
production of polyketides, a diverse group of natural
products.
Length = 254
Score = 41.7 bits (98), Expect = 3e-04
Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 4/87 (4%)
Query: 287 AGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPS----VMGIGPAVAIPA 342
DGA A ++ A+++G S +A S V G G A A
Sbjct: 94 GSEEFVFGDGAAAAVVESEEHALRRGAHPQAEIVSTAATFDGASMVPAVSGEGLARAARK 153
Query: 343 AVKSAGLQIDDINLFEINEVLVPIIAA 369
A++ AGL DI+ E + PI A
Sbjct: 154 ALEGAGLTPSDIDYVEAHGTGTPIGDA 180
Score = 40.5 bits (95), Expect = 7e-04
Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Query: 72 TLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLR 131
A +L + I L+ + ++VGT G + A++ G P
Sbjct: 5 ITASELGFEAAEQAIADAGLSKGPIVGVIVGTTGGSGEFSGAAGQ-LAYHLGISG-GPAY 62
Query: 132 TVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLES 166
+VN+ C++GL A+A ++ G DI +A G E
Sbjct: 63 SVNQACATGLTALALAVQQVQNGKADIVLAGGSEE 97
>gnl|CDD|238429 cd00833, PKS, polyketide synthases (PKSs) polymerize simple fatty
acids into a large variety of different products, called
polyketides, by successive decarboxylating Claisen
condensations. PKSs can be divided into 2 groups,
modular type I PKSs consisting of one or more large
multifunctional proteins and iterative type II PKSs,
complexes of several monofunctional subunits.
Length = 421
Score = 37.9 bits (89), Expect = 0.006
Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 11/73 (15%)
Query: 294 SDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVD--------PSVMGIGPAVAIPAAVK 345
+G G V+L + S A++ G I V R SAV D PS G A I A
Sbjct: 234 GEGVGVVVLKRLSDALRDGDRIYAVIRG-SAVNQDGRTKGITAPS--GEAQAALIRRAYA 290
Query: 346 SAGLQIDDINLFE 358
AG+ DI+ E
Sbjct: 291 RAGVDPSDIDYVE 303
>gnl|CDD|238424 cd00828, elong_cond_enzymes, "elongating" condensing enzymes are a
subclass of decarboxylating condensing enzymes,
including beta-ketoacyl [ACP] synthase, type I and II
and polyketide synthases.They are characterized by the
utlization of acyl carrier protein (ACP) thioesters as
primer substrates, as well as the nature of their active
site residues.
Length = 407
Score = 37.8 bits (88), Expect = 0.007
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 284 TTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILG--VFRSFSAVGVDPSV--MGIGPAVA 339
+ ++GAG ++L + LA+ +G PI G + + G SV G G A A
Sbjct: 220 FDETRDGFVEAEGAGVLVLERAELALARGAPIYGRVAGTASTTDGAGRSVPAGGKGIARA 279
Query: 340 IPAAVKSAGLQIDDI 354
I A+ AGL +DD+
Sbjct: 280 IRTALAKAGLSLDDL 294
>gnl|CDD|223381 COG0304, FabB, 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid
metabolism / Secondary metabolites biosynthesis,
transport, and catabolism].
Length = 412
Score = 35.7 bits (83), Expect = 0.034
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 294 SDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVG-----VDPSVMGIGPAVAIPAAVKSAG 348
+GAGA++L + A+ +G I + P+ G G A+ AA+ AG
Sbjct: 231 GEGAGALVLEELEHALARGAKIYAEIVGYGTTSDAYHITAPAPDGEGAIRAMRAALADAG 290
Query: 349 LQIDDI 354
L +DI
Sbjct: 291 LTPEDI 296
Score = 30.3 bits (69), Expect = 1.9
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 129 PLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLES 166
P T C++G A+ D I+ G D+ IA G E+
Sbjct: 154 PNYTPVTACATGAHAIGDAVRLIRLGKADVVIAGGAEA 191
>gnl|CDD|238430 cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier protein (ACP)
synthase (KAS), type I and II. KASs are responsible for
the elongation steps in fatty acid biosynthesis. KASIII
catalyses the initial condensation and KAS I and II
catalyze further elongation steps by Claisen
condensation of malonyl-acyl carrier protein (ACP) with
acyl-ACP.
Length = 406
Score = 34.8 bits (81), Expect = 0.058
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 8/71 (11%)
Query: 294 SDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVG-----VDPSVMGIGPAVAIPAAVKSAG 348
+GAG ++L A +G I + A P G G A A+ AA+ AG
Sbjct: 230 GEGAGVLVLESLEHAKARGAKIYAEILGYGASSDAYHITAPDPDGEGAARAMRAALADAG 289
Query: 349 L---QIDDINL 356
L ID IN
Sbjct: 290 LSPEDIDYINA 300
Score = 33.3 bits (77), Expect = 0.20
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 137 CSSGLQAVADVATAIKAGLYDIGIAAGLESM 167
C+SG A+ D A I+ G D+ IA G E++
Sbjct: 161 CASGAHAIGDAARLIRLGRADVVIAGGAEAL 191
>gnl|CDD|240424 PTZ00455, PTZ00455, 3-ketoacyl-CoA thiolase; Provisional.
Length = 438
Score = 34.5 bits (79), Expect = 0.080
Identities = 57/265 (21%), Positives = 96/265 (36%), Gaps = 56/265 (21%)
Query: 75 DDLLAPVLKAVIEKTRLNPSE--VGDIVVGTVLAP--------GSTRAMECRMAAFYAGF 124
++LLA ++ +E T L+ V +VVG L G +
Sbjct: 49 EELLATAIQGTLENTGLDGKAALVDKVVVGNFLGELFSSQGHLGPAAVGSLGQSGASNAL 108
Query: 125 PETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEI 184
+R V C+SG AV A+ AG DI + G+E T S V G +
Sbjct: 109 LYKPAMR-VEGACASGGLAVQSAWEALLAGTSDIALVVGVEVQTTVSARVGGDYLARAAD 167
Query: 185 FTQARD-------CLLPMGITSENVAQRFGVTRQEQDLAAVESHRRAAAATASGKFKDEI 237
+ + R CL A+R ++ ++ R AA A A+G K+ +
Sbjct: 168 YRRQRKLDDFTFPCLF---------AKRMKYIQEHGHFTMEDTARVAAKAYANGN-KNPL 217
Query: 238 IPVNTKIVDPKTGVEKRVTISVDDGIRP----NTTIADLAKLKPAFKKDGTTTAGNASQV 293
++T+ + + + P N T ++ + SQV
Sbjct: 218 AHMHTRKLSLE-------FCTGASDKNPKFLGNETYKPFLRMT------------DCSQV 258
Query: 294 SDGAGAVLLMKRSLAVQKGLPILGV 318
SDG ++ LA ++GL +G+
Sbjct: 259 SDGGAGLV-----LASEEGLQKMGL 278
>gnl|CDD|214836 smart00825, PKS_KS, Beta-ketoacyl synthase. The structure of
beta-ketoacyl synthase is similar to that of the
thiolase family and also chalcone synthase. The active
site of beta-ketoacyl synthase is located between the N
and C-terminal domains.
Length = 298
Score = 32.3 bits (75), Expect = 0.32
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 294 SDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVD 328
+G G V+L + S A++ G PIL V R SAV D
Sbjct: 161 GEGVGVVVLKRLSDALRDGDPILAVIRG-SAVNQD 194
>gnl|CDD|235771 PRK06289, PRK06289, acetyl-CoA acetyltransferase; Provisional.
Length = 403
Score = 32.4 bits (74), Expect = 0.34
Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 15/100 (15%)
Query: 76 DLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAP-----GSTRAMECRMAAFYAGFPETVPL 130
DL V+ + ++ ++ + VG G AM + G P +
Sbjct: 28 DLTREVVDGTLAAAGVDADDIEVVHVGNFFGELFAGQGHLGAMPATVHPALWGVPAS--- 84
Query: 131 RTVNRQ---CSSGLQAVADVATAIKAGLYDIGIAAGLESM 167
R C+SG A ++AG YD+ + G+E M
Sbjct: 85 ----RHEAACASGSVATLAAMADLRAGRYDVALVVGVELM 120
>gnl|CDD|181013 PRK07516, PRK07516, acetyl-CoA acetyltransferase; Provisional.
Length = 389
Score = 31.8 bits (73), Expect = 0.57
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 10/75 (13%)
Query: 291 SQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVG-------VDPSVMGIGPAVAIPAA 343
S VSDGA A++L A + FR+ + V DP GP A A
Sbjct: 213 SLVSDGAAALVLADAETARALQRAV--RFRARAHVNDFLPLSRRDPLAFE-GPRRAWQRA 269
Query: 344 VKSAGLQIDDINLFE 358
+ AG+ +DD++ E
Sbjct: 270 LAQAGVTLDDLSFVE 284
Score = 28.8 bits (65), Expect = 4.7
Identities = 30/135 (22%), Positives = 42/135 (31%), Gaps = 19/135 (14%)
Query: 49 DDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLA-- 106
IV T G + L+ V + + + +V I +G A
Sbjct: 2 MTASIVGWAHT-----PFGKLDAETLESLIVRVAREALAHAGIAAGDVDGIFLGHFNAGF 56
Query: 107 -----PGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIA 161
P S F P V C++G AV AI+AG I +
Sbjct: 57 SPQDFPASLVLQADPALRF-------KPATRVENACATGSAAVYAALDAIEAGRARIVLV 109
Query: 162 AGLESMTVNSISVVG 176
G E MT + VG
Sbjct: 110 VGAEKMTATPTAEVG 124
>gnl|CDD|200247 TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II.
3-oxoacyl-[acyl-carrier-protein] synthase 2 (KAS-II,
FabF) is involved in the condensation step of fatty acid
biosynthesis in which the malonyl donor group is
decarboxylated and the resulting carbanion used to
attack and extend the acyl group attached to the acyl
carrier protein. Most genomes encoding fatty acid
biosynthesis contain a number of condensing enzymes,
often of all three types: 1, 2 and 3. Synthase 2 is
mechanistically related to synthase 1 (KAS-I, FabB)
containing a number of absolutely conserved catalytic
residues in common. This model is based primarily on
genes which are found in apparent operons with other
essential genes of fatty acid biosynthesis
(GenProp0681). The large gap between the trusted cutoff
and the noise cutoff contains many genes which are not
found adjacent to genes of the fatty acid pathway in
genomes that often also contain a better hit to this
model. These genes may be involved in other processes
such as polyketide biosyntheses. Some genomes contain
more than one above-trusted hit to this model which may
result from recent paralogous expansions. Second hits to
this model which are not next to other fatty acid
biosynthesis genes may be involved in other processes.
FabB sequences should fall well below the noise cutoff
of this model [Fatty acid and phospholipid metabolism,
Biosynthesis].
Length = 407
Score = 31.7 bits (73), Expect = 0.68
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 137 CSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVG 176
C++G A+ D I+ G D+ IA G E+ + + + G
Sbjct: 161 CATGTHAIGDAFRLIQRGDADVMIAGGAEA-AITPLGIAG 199
>gnl|CDD|181327 PRK08256, PRK08256, lipid-transfer protein; Provisional.
Length = 391
Score = 31.4 bits (72), Expect = 0.69
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 128 VPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT 168
+P+ VN CS+G A+ A+++G D +A G E M
Sbjct: 71 IPIVNVNNNCSTGSTALFLARQAVRSGAADCALALGFEQMQ 111
>gnl|CDD|180433 PRK06157, PRK06157, acetyl-CoA acetyltransferase; Validated.
Length = 398
Score = 31.2 bits (71), Expect = 1.0
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 128 VPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLE 165
+P+ V C++G +A A+ +G YDI +A G+E
Sbjct: 79 IPVTRVENFCATGSEAFRGAVYAVASGAYDIALALGVE 116
>gnl|CDD|180839 PRK07103, PRK07103, polyketide beta-ketoacyl:acyl carrier protein
synthase; Validated.
Length = 410
Score = 30.8 bits (70), Expect = 1.2
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 296 GAGAVLLMKRSLAVQKGLPILGVFRSFSAV-----GVDPSVMGIGPAVAIPAAVKSAGLQ 350
GAV+L A ++G +S G DPS+ G I AA++ AGL
Sbjct: 240 ACGAVVLESAESARRRGARPYAKLLGWSMRLDANRGPDPSL--EGEMRVIRAALRRAGLG 297
Query: 351 IDDIN 355
+DI+
Sbjct: 298 PEDID 302
>gnl|CDD|179591 PRK03545, PRK03545, putative arabinose transporter; Provisional.
Length = 390
Score = 30.6 bits (70), Expect = 1.3
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 145 ADVATAIKAGLYDIGIAAG 163
DVA A+ +G+++IGI AG
Sbjct: 327 TDVAMALFSGIFNIGIGAG 345
>gnl|CDD|235987 PRK07314, PRK07314, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 411
Score = 30.5 bits (70), Expect = 1.6
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 137 CSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVG 176
C++G A+ D A I G D+ +A G E+ + + + G
Sbjct: 162 CATGAHAIGDAARLIAYGDADVMVAGGAEA-AITPLGIAG 200
>gnl|CDD|225858 COG3321, COG3321, Polyketide synthase modules and related proteins
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 1061
Score = 30.5 bits (69), Expect = 1.8
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 7/71 (9%)
Query: 294 SDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGI------GPAVAIPAAVKSA 347
+GAG V+L + S A + G I V R SAV D G+ A I A+ A
Sbjct: 238 GEGAGVVVLKRLSDAERDGDRIYAVIR-GSAVNQDGRSNGLTAPNLEAQADVIREALADA 296
Query: 348 GLQIDDINLFE 358
G+ + E
Sbjct: 297 GIDPATVQYVE 307
>gnl|CDD|180373 PRK06059, PRK06059, lipid-transfer protein; Provisional.
Length = 399
Score = 30.1 bits (68), Expect = 2.1
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 128 VPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESM 167
P+ + C+SG QA+ I AGL D+ + G ++
Sbjct: 76 APVSSSYAACASGSQALQSARAQILAGLCDVALVVGADTT 115
>gnl|CDD|236845 PRK11099, PRK11099, putative inner membrane protein; Provisional.
Length = 399
Score = 29.5 bits (67), Expect = 3.1
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 100 VVGTVLAPGSTR-AMECRMAAFYAGFP 125
++G ++A R AM C +AAF+ G P
Sbjct: 112 LIGGIIAGFGARLAMGCNLAAFFTGIP 138
>gnl|CDD|179420 PRK02399, PRK02399, hypothetical protein; Provisional.
Length = 406
Score = 29.1 bits (66), Expect = 4.5
Identities = 18/63 (28%), Positives = 22/63 (34%), Gaps = 20/63 (31%)
Query: 91 LNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFP----------------ETVPLRTVN 134
L +EV D + G VLA G R AA G P +TVP +
Sbjct: 243 LTTTEVCDELFGGVLAAGPDRL----EAAARTGIPQVVSPGALDMVNFGAPDTVPEKFRG 298
Query: 135 RQC 137
R
Sbjct: 299 RLL 301
>gnl|CDD|215449 PLN02836, PLN02836, 3-oxoacyl-[acyl-carrier-protein] synthase.
Length = 437
Score = 28.6 bits (64), Expect = 5.4
Identities = 12/40 (30%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 137 CSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVG 176
C++G ++ D I+ G D+ +A G ES +++++S+ G
Sbjct: 184 CATGAHSIGDAFRMIQFGDADVMVAGGTES-SIDALSIAG 222
>gnl|CDD|235781 PRK06333, PRK06333, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 424
Score = 28.4 bits (64), Expect = 7.7
Identities = 13/40 (32%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 137 CSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVG 176
C++G+QA+ D A I++G D+ + G E+ ++ +S+ G
Sbjct: 173 CAAGVQAIGDAARLIRSGEADVAVCGGTEA-AIDRVSLAG 211
>gnl|CDD|173154 PRK14691, PRK14691, 3-oxoacyl-(acyl carrier protein) synthase II;
Provisional.
Length = 342
Score = 28.2 bits (62), Expect = 7.8
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 137 CSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMG 196
C++G+QA+ D I+ D+ + G E++ ++++S+ G F AR
Sbjct: 91 CAAGVQAIGDAVRMIRNNEADVALCGGAEAV-IDTVSLAG--------FAAARALSTHFN 141
Query: 197 ITSENVAQRFGVTR 210
T E ++ F R
Sbjct: 142 STPEKASRPFDTAR 155
>gnl|CDD|221738 pfam12727, PBP_like, PBP superfamily domain. This family belongs
to the periplasmic binding domain superfamily. It is
often associated with a helix-turn-helix domain.
Length = 193
Score = 27.5 bits (62), Expect = 8.2
Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 27/64 (42%)
Query: 129 PLRTVNRQCSSGLQAVAD-------------------------VATAIKAGLYDIGIAAG 163
+R VNRQ SG + + D VA A+ +G D G+ G
Sbjct: 93 GIRFVNRQRGSGTRVLLDELLRKAGISPEDINGYAREVRSHLAVAAAVASGKADAGL--G 150
Query: 164 LESM 167
+E+
Sbjct: 151 IEAA 154
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.132 0.366
Gapped
Lambda K H
0.267 0.0940 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,079,675
Number of extensions: 1896578
Number of successful extensions: 2188
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2044
Number of HSP's successfully gapped: 115
Length of query: 374
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 276
Effective length of database: 6,590,910
Effective search space: 1819091160
Effective search space used: 1819091160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.5 bits)