RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 017304
(374 letters)
>2wu9_A 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine oxidation, fatty
acid metabolism, oxylipin biosynthesis, plant lipid
metabolism; 1.50A {Arabidopsis thaliana} PDB: 2c7y_A
2c7z_A 2wua_A
Length = 442
Score = 494 bits (1274), Expect = e-175
Identities = 259/337 (76%), Positives = 295/337 (87%)
Query: 25 SPAISASICSAGEAAGYHRKPAFDDDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKA 84
+ AG++A Y R + DDVVIVAA+RT +CK+KRG FKDT DDLLAPVL+A
Sbjct: 6 HHHVDDDDKMAGDSAAYQRTSLYGDDVVIVAAHRTPLCKSKRGNFKDTYPDDLLAPVLRA 65
Query: 85 VIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAV 144
+IEKT LNPSEVGDIVVGTVLAPGS RA ECRMAAFYAGFPETV +RTVNRQCSSGLQAV
Sbjct: 66 LIEKTNLNPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVAVRTVNRQCSSGLQAV 125
Query: 145 ADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQ 204
ADVA AIKAG YDIGI AGLESMT N ++ G VNP V+ F QA++CLLPMG+TSENVAQ
Sbjct: 126 ADVAAAIKAGFYDIGIGAGLESMTTNPMAWEGSVNPAVKKFAQAQNCLLPMGVTSENVAQ 185
Query: 205 RFGVTRQEQDLAAVESHRRAAAATASGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIR 264
RFGV+RQEQD AAV+SHR+AAAATA+GKFKDEIIPV TK+VDPKTG EK +T+SVDDGIR
Sbjct: 186 RFGVSRQEQDQAAVDSHRKAAAATAAGKFKDEIIPVKTKLVDPKTGDEKPITVSVDDGIR 245
Query: 265 PNTTIADLAKLKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSA 324
P TT+A L KLKP FKKDGTTTAGN+SQVSDGAGAVLLMKRS+A+QKGLP+LGVFR+F+A
Sbjct: 246 PTTTLASLGKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMQKGLPVLGVFRTFAA 305
Query: 325 VGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINE 361
VGVDP++MGIGPAVAIPAAVK+AGL++DDI+LFEINE
Sbjct: 306 VGVDPAIMGIGPAVAIPAAVKAAGLELDDIDLFEINE 342
>2iik_A 3-ketoacyl-COA thiolase, peroxisomal; fatty acid metabolism,
structural genomics, structural genom consortium, SGC,
transferase; 2.55A {Homo sapiens}
Length = 418
Score = 477 bits (1230), Expect = e-169
Identities = 180/350 (51%), Positives = 242/350 (69%), Gaps = 10/350 (2%)
Query: 12 LQHLQPSSSQTSDSPAISASICSAGEAAGYHRKPAFDDDVVIVAAYRTAICKAKRGGFKD 71
+ H SS + ++ DVV+V RTAIC+A RGGFKD
Sbjct: 1 MHHHHHHSSGVD-----LGTENLYFQSMAPQASA---ADVVVVHGRRTAICRAGRGGFKD 52
Query: 72 TLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLR 131
T D+LL+ V+ AV++ L P ++GDI VG VL PG+ A+ R+A F + PETVPL
Sbjct: 53 TTPDELLSAVMTAVLKDVNLRPEQLGDICVGNVLQPGA-GAIMARIAQFLSDIPETVPLS 111
Query: 132 TVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDC 191
TVNRQCSSGLQAVA +A I+ G YDIG+A G+ESM++ G + ++ +ARDC
Sbjct: 112 TVNRQCSSGLQAVASIAGGIRNGSYDIGMACGVESMSLADRGNPGNITSRLMEKEKARDC 171
Query: 192 LLPMGITSENVAQRFGVTRQEQDLAAVESHRRAAAATASGKFKDEIIPVNTKIVDPKTGV 251
L+PMGITSENVA+RFG++R++QD A+ S ++AA A + G F+ EI+PV T + D K G
Sbjct: 172 LIPMGITSENVAERFGISREKQDTFALASQQKAARAQSKGCFQAEIVPVTTTVHDDK-GT 230
Query: 252 EKRVTISVDDGIRPNTTIADLAKLKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQK 311
++ +T++ D+GIRP+TT+ LAKLKPAFKKDG+TTAGN+SQVSDGA A+LL +RS A +
Sbjct: 231 KRSITVTQDEGIRPSTTMEGLAKLKPAFKKDGSTTAGNSSQVSDGAAAILLARRSKAEEL 290
Query: 312 GLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINE 361
GLPILGV RS++ VGV P +MGIGPA AIP A++ AGL + D+++FEINE
Sbjct: 291 GLPILGVLRSYAVVGVPPDIMGIGPAYAIPVALQKAGLTVSDVDIFEINE 340
>1afw_A 3-ketoacetyl-COA thiolase; fatty acid metabolism; 1.80A
{Saccharomyces cerevisiae} SCOP: c.95.1.1 c.95.1.1 PDB:
1pxt_A
Length = 393
Score = 446 bits (1150), Expect = e-157
Identities = 143/321 (44%), Positives = 195/321 (60%), Gaps = 18/321 (5%)
Query: 49 DDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEK----TRLNPSEVGDIVVGTV 104
+DVVIVAA R+AI K +G FKD D LL L I + R + + + ++ G V
Sbjct: 10 EDVVIVAANRSAIGKGFKGAFKDVNTDYLLYNFLNEFIGRFPEPLRADLNLIEEVACGNV 69
Query: 105 LAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGL 164
L G+ A E R A +G P + P +NRQCSSGL AV D+A IK G DIG+A G+
Sbjct: 70 LNVGA-GATEHRAACLASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALGV 128
Query: 165 ESMTVNSIS---VVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLAAVESH 221
ESMT N + + + +++ +A+ CL+PMGIT+ENVA F ++R++QD A S+
Sbjct: 129 ESMTNNYKNVNPLGMISSEELQKNREAKKCLIPMGITNENVAANFKISRKDQDEFAANSY 188
Query: 222 RRAAAATASGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKK 281
++A A G F+DEI+P+ D+G RPN T L+ ++PAF K
Sbjct: 189 QKAYKAKNEGLFEDEILPIKLP---------DGSICQSDEGPRPNVTAESLSSIRPAFIK 239
Query: 282 D-GTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAI 340
D GTTTAGNASQVSDG VLL +RS+A Q LP+LG + F VGV P +MG+GPA AI
Sbjct: 240 DRGTTTAGNASQVSDGVAGVLLARRSVANQLNLPVLGRYIDFQTVGVPPEIMGVGPAYAI 299
Query: 341 PAAVKSAGLQIDDINLFEINE 361
P +++ GLQ+ DI++FEINE
Sbjct: 300 PKVLEATGLQVQDIDIFEINE 320
>3goa_A 3-ketoacyl-COA thiolase; metabolism, fatty acid, phospholipid,
IDP01071, acyltransferase, cytoplasm, fatty acid
metabolism; 1.70A {Salmonella typhimurium}
Length = 387
Score = 349 bits (898), Expect = e-119
Identities = 120/319 (37%), Positives = 168/319 (52%), Gaps = 19/319 (5%)
Query: 50 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPG 108
VVIV A RT + ++K G F++ A+DL A ++++++ + L + + DI G V
Sbjct: 3 QVVIVDAIRTPMGRSKGGAFRNVRAEDLSAHLMRSLLARNPSLTAATLDDIYWGCVQQTL 62
Query: 109 STRAMEC-----RMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAG 163
E R AA A P +VP TVNR C S +QA+ D A I G + + G
Sbjct: 63 -----EQGFNIARNAALLAEIPHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQVCLVGG 117
Query: 164 LESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLAAVESHRR 223
+E M +S +P + MG+T+E +++ G++R+ QD A SH R
Sbjct: 118 VEHMGHVPMSHGVDFHPG--LSRNVAKAAGMMGLTAEMLSRLHGISREMQDQFAARSHAR 175
Query: 224 AAAATASGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKK-D 282
A AAT SG FK EIIP D + D+ IRP TT+ L+ L+PAF
Sbjct: 176 AWAATQSGAFKTEIIPTGGHDADGVL-----KQFNYDEVIRPETTVEALSTLRPAFDPVS 230
Query: 283 GTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPA 342
GT TAG +S +SDGA A+L+M S A + GL RS + VG DPS+MG GP A
Sbjct: 231 GTVTAGTSSALSDGAAAMLVMSESRARELGLKPRARIRSMAVVGCDPSIMGYGPVPASKL 290
Query: 343 AVKSAGLQIDDINLFEINE 361
A+K AGL DI++FE+NE
Sbjct: 291 ALKKAGLSASDIDVFEMNE 309
>1wdk_C 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrameric complex,
lyase, oxidoreductase/transferase complex, lyase; HET:
ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: c.95.1.1
c.95.1.1 PDB: 1wdl_C* 1wdm_C* 2d3t_C*
Length = 390
Score = 348 bits (895), Expect = e-118
Identities = 121/319 (37%), Positives = 178/319 (55%), Gaps = 19/319 (5%)
Query: 50 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEK-TRLNPSEVGDIVVGTVLAPG 108
DVVIV RT + ++K G ++T A+D+ A ++ V+E+ ++++P EV D++ G V
Sbjct: 6 DVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKVLERNSKVDPGEVEDVIWGCVNQTL 65
Query: 109 STRAMEC-----RMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAG 163
E RMA+ P T +TV+R C S + A+ A AI G D+ + G
Sbjct: 66 -----EQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGG 120
Query: 164 LESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLAAVESHRR 223
+E M +S++ V+P + A MG+T+E + + G++R++QD AV SH+
Sbjct: 121 VEHMG--HVSMMHGVDPNPHMSLYAAKASGMMGLTAEMLGKMHGISREQQDAFAVRSHQL 178
Query: 224 AAAATASGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFK-KD 282
A AT GKFKDEIIP+ + D D+ IRP+TT+ LA LKPAF K
Sbjct: 179 AHKATVEGKFKDEIIPM--QGYDEN---GFLKIFDYDETIRPDTTLESLAALKPAFNPKG 233
Query: 283 GTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPA 342
GT TAG +SQ++DGA +++M A GL L V RS + GVDP++MG GP A
Sbjct: 234 GTVTAGTSSQITDGASCMIVMSAQRAKDLGLEPLAVIRSMAVAGVDPAIMGYGPVPATQK 293
Query: 343 AVKSAGLQIDDINLFEINE 361
A+K AGL + DI+ E+NE
Sbjct: 294 ALKRAGLNMADIDFIELNE 312
>1ulq_A Putative acetyl-COA acetyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; 3.00A
{Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1
Length = 401
Score = 322 bits (827), Expect = e-108
Identities = 123/332 (37%), Positives = 174/332 (52%), Gaps = 31/332 (9%)
Query: 50 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGS 109
+ IV A RT I K G DDLLA L +++++ + EV D+ G G
Sbjct: 3 EAWIVEAVRTPIGKHG-GALASVRPDDLLAHALSVLVDRSGVPKEEVEDVYAGCANQAGE 61
Query: 110 TRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT- 168
RMA AGFP V TVNR C SGL+AVA A AI AG + I +G+ESM+
Sbjct: 62 DNRNVARMALLLAGFPVEVAGCTVNRLCGSGLEAVAQAARAIWAGEGKVYIGSGVESMSR 121
Query: 169 -------------------VNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVT 209
++ VNPK+ QA MG T+EN+A+ +G+
Sbjct: 122 APYAVPKPERGFPTGNLVMYDTTLGWRFVNPKM----QALYGTESMGETAENLAEMYGIR 177
Query: 210 RQEQDLAAVESHRRAAAATASGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTI 269
R+EQD A+ SH++A A G+F+DE++PV K ++ + + D+G R +T++
Sbjct: 178 REEQDRFALLSHQKAVRAWEEGRFQDEVVPVPVK------RGKEEILVEQDEGPRRDTSL 231
Query: 270 ADLAKLKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDP 329
LA L+P F++ GT TAGN+S ++DGA AVLL+ A GL L R+ + GV P
Sbjct: 232 EKLAALRPVFREGGTVTAGNSSPLNDGAAAVLLVSDDYAKAHGLRPLARVRAIAVAGVPP 291
Query: 330 SVMGIGPAVAIPAAVKSAGLQIDDINLFEINE 361
+MGIGP A A++ AGL D+ L E+NE
Sbjct: 292 RIMGIGPVPATRKALERAGLSFSDLGLIELNE 323
>3ss6_A Acetyl-COA acetyltransferase; structural genomics, csgid, center
for structural genomics O infectious diseases, alpha
beta; HET: CSO; 1.70A {Bacillus anthracis}
Length = 394
Score = 320 bits (824), Expect = e-108
Identities = 119/323 (36%), Positives = 178/323 (55%), Gaps = 20/323 (6%)
Query: 50 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGS 109
+VVI AA R+ I G K+ +L PVL+ +++ + P EV ++++G +
Sbjct: 6 NVVITAAVRSPIGTFG-GALKNVTPVELAVPVLQEAVKRGGVEPHEVDEVILGHCIQRTD 64
Query: 110 TRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTV 169
R AA AGFP+TV T+ RQCSSG+QA+ A I+ G+ ++ +A G+E+M+
Sbjct: 65 EANT-ARTAALAAGFPDTVTGYTIQRQCSSGMQAIMSAAMQIQLGVSEVVVAGGVEAMS- 122
Query: 170 NSISVV-----GQVNPKVEIFTQARDCL------LPMGITSENVAQRFGVTRQEQDLAAV 218
+S + GQ EI + L + MG T+EN+ +++ +TR+EQD A+
Sbjct: 123 SSPYALKQHRWGQRLQHGEIRDTVWEVLEDPIHHIMMGETAENLVEQYEITREEQDEVAL 182
Query: 219 ESHRRAAAATASGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPA 278
SH A A SG F D+I+P+ K + V S D+ R + T LA LKPA
Sbjct: 183 RSHTLALKAIESGYFDDQIVPITIKE---RRKE---VVFSKDEHPRADITAEKLAGLKPA 236
Query: 279 FKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAV 338
F+KDG+ TAGNAS ++DG+ ++LM A +KGL L +S GVDP +MGIGPA
Sbjct: 237 FRKDGSVTAGNASGLNDGSAVLVLMSEEKAKEKGLQPLARIVGYSVAGVDPKIMGIGPAP 296
Query: 339 AIPAAVKSAGLQIDDINLFEINE 361
AI ++ ++D +L EINE
Sbjct: 297 AIRKGLEKVDWSLEDADLLEINE 319
>4dd5_A Acetyl-COA acetyltransferase; structural genomics, center for
structural genomics of infec diseases, csgid, thiolase;
1.25A {Clostridium difficile}
Length = 396
Score = 316 bits (813), Expect = e-106
Identities = 118/325 (36%), Positives = 176/325 (54%), Gaps = 23/325 (7%)
Query: 50 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGS 109
+VVI +A RTA+ G FK A +L K I++ + P + + ++G VL G
Sbjct: 8 EVVIASAARTAVGSFG-GAFKSVSAVELGVTAAKEAIKRANITPDMIDESLLGGVLTAGL 66
Query: 110 TRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTV 169
+ + R A AG P P T+N C SGL++V+ + I G DI + G E+M+
Sbjct: 67 GQNI-ARQIALGAGIPVEKPAMTINIVCGSGLRSVSMASQLIALGDADIMLVGGAENMS- 124
Query: 170 NSISVVGQV-------NPKVEIFTQARDCL------LPMGITSENVAQRFGVTRQEQDLA 216
S +V + + + +D L MGIT+EN+A+++ +TR+EQD
Sbjct: 125 MSPYLVPSARYGARMGDAAF-VDSMIKDGLSDIFNNYHMGITAENIAEQWNITREEQDEL 183
Query: 217 AVESHRRAAAATASGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLK 276
A+ S +A A A GKF +EI+PV I K + D+ I+P TT+ LAKL+
Sbjct: 184 ALASQNKAEKAQAEGKFDEEIVPV--VIKGRK----GDTVVDKDEYIKPGTTMEKLAKLR 237
Query: 277 PAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGP 336
PAFKKDGT TAGNAS ++DGA +++M + A + G+ L S+ GVDP +MG GP
Sbjct: 238 PAFKKDGTVTAGNASGINDGAAMLVVMAKEKAEELGIEPLATIVSYGTAGVDPKIMGYGP 297
Query: 337 AVAIPAAVKSAGLQIDDINLFEINE 361
A A+++A + I+DI+L E NE
Sbjct: 298 VPATKKALEAANMTIEDIDLVEANE 322
>4e1l_A Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, transferase;
2.00A {Clostridium difficile}
Length = 395
Score = 314 bits (808), Expect = e-105
Identities = 127/324 (39%), Positives = 183/324 (56%), Gaps = 20/324 (6%)
Query: 50 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGS 109
DVVIV+A RT I G FK+T A L +K I + LN SE+ ++++G VL G
Sbjct: 6 DVVIVSAVRTPIGSFG-GVFKNTSAVQLGTIAVKEAISRVGLNLSEIDEVIIGNVLQTGL 64
Query: 110 TRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTV 169
+ + R A AG P +VP TVN+ C SGL++V A +I +G D+ IA G E+M+
Sbjct: 65 GQNV-ARQIAINAGIPNSVPSYTVNKLCGSGLKSVQLAAQSITSGENDVVIAGGTENMS- 122
Query: 170 NSISVVGQV------NPKVEIFTQARDCL------LPMGITSENVAQRFGVTRQEQDLAA 217
+ +V + + D L MGIT+EN+A +F TR+ QD A
Sbjct: 123 QAPYIVPTARFGSKMGNITMVDSMLTDGLIDAFNQYHMGITAENIATKFEFTREMQDKLA 182
Query: 218 VESHRRAAAATASGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKP 277
+ES +A A + +FK+EI+PV ++ + + TI D+ + T L+KLKP
Sbjct: 183 LESQNKAENAIKNNRFKEEIVPV--DVLIRRGKI---ETIDKDEYPKLGMTFEGLSKLKP 237
Query: 278 AFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPA 337
AFKKDGT TAGNAS ++DGA ++LM + A + G+ L +S+++ GV+P VMG GP
Sbjct: 238 AFKKDGTVTAGNASGINDGAAMLILMSQQKADELGIRPLAKIKSYASAGVEPEVMGTGPI 297
Query: 338 VAIPAAVKSAGLQIDDINLFEINE 361
A A+K AGL I+DI+L E NE
Sbjct: 298 PATRKALKKAGLSINDIDLIEANE 321
>2vu1_A Acetyl-COA acetyltransferase; acyltransferase, PHB biosynthesis,
thiolase FOL; HET: CSO OPI; 1.51A {Zoogloea ramigera}
PDB: 1nl7_A* 1ou6_A* 2vu0_A* 1m4s_A* 2vu2_A* 2wkv_A*
2wku_A* 1m1t_A 1m3k_A 1m1o_A 1m3z_A* 2vtz_A* 2wl5_A*
2wkt_A* 2wl4_A* 1m4t_A* 2wl6_A 1qfl_A* 1dlv_A* 1dlu_A*
...
Length = 392
Score = 308 bits (791), Expect = e-103
Identities = 123/324 (37%), Positives = 178/324 (54%), Gaps = 20/324 (6%)
Query: 49 DDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPG 108
+VI +A RTA+ G F +T A +L A V+ AV+E+ + EV ++++G VL G
Sbjct: 3 PSIVIASAARTAVGSFN-GAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAG 61
Query: 109 STRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT 168
+ R AA AG P+ +N+ C SGL+AVA I G I +A G+ESM+
Sbjct: 62 EGQNP-ARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMS 120
Query: 169 VNSISVVGQVNPKVEIFTQARDCLL-----------PMGITSENVAQRFGVTRQEQDLAA 217
+ + D ++ MG T+ENVA+++ ++R EQD A
Sbjct: 121 -MAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFA 179
Query: 218 VESHRRAAAATASGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKP 277
V S +A AA G+FKDEI+P K G + +T+ D+ IR T+ +AKL+P
Sbjct: 180 VASQNKAEAAQKDGRFKDEIVPFIVK------GRKGDITVDADEYIRHGATLDSMAKLRP 233
Query: 278 AFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPA 337
AF K+GT TAGNAS ++DGA A LLM + A ++G+ LG S++ VGVDP VMG GP
Sbjct: 234 AFDKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPI 293
Query: 338 VAIPAAVKSAGLQIDDINLFEINE 361
A A++ AG +I D++L E NE
Sbjct: 294 PASRKALERAGWKIGDLDLVEANE 317
>3svk_A Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; 2.20A {Mycobacterium
avium}
Length = 407
Score = 308 bits (791), Expect = e-103
Identities = 101/337 (29%), Positives = 155/337 (45%), Gaps = 37/337 (10%)
Query: 50 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIE-KTRLNPSEVGDIVVGTVLAPG 108
+ I A RT K K G + +L+ ++ + L+ + + D+++G V G
Sbjct: 8 EAFIYEAIRTPRGKQKNGSLTEVKPLNLVVGLVDELRRRYPDLDETLISDMILGVVSPVG 67
Query: 109 STRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT 168
R A AG PET +NR C+SGL+AV A +++G D+ +A G+ESM+
Sbjct: 68 DQGGDIARTAVLAAGLPETTGGVQLNRFCASGLEAVNTAAQKVRSGWDDLVLAGGVESMS 127
Query: 169 ---VNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLAAVESHRRAA 225
+ S +P+ T R +P GI ++ +A G +R++ D A+ S ++AA
Sbjct: 128 RVPMGSDGGAWATDPE----TNYRIGFVPQGIGADLIATLEGFSREDVDAYALRSQQKAA 183
Query: 226 AATASGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKKDGTT 285
AA + G F ++PV V + D+ +RP+TT+ LAKLK AF G
Sbjct: 184 AAWSGGYFAKSVVPV--------RDQNGLVILDHDEHMRPDTTMEGLAKLKTAFDGVGEM 235
Query: 286 ---------------------TAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSA 324
T GN+S + DGA VL+ +GL + +
Sbjct: 236 GGFDDVALQKYHWVEKINHVHTGGNSSGIVDGAALVLVGSEKAGKSQGLTPRARIVATAT 295
Query: 325 VGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINE 361
G DP +M GP A + AGL IDDI+LFE+NE
Sbjct: 296 SGSDPVIMLTGPTPATRKVLDRAGLTIDDIDLFELNE 332
>1wl4_A Acetyl-coenzyme A acetyltransferase 2; thiolase fold; HET: COA;
1.55A {Homo sapiens} PDB: 1wl5_A
Length = 397
Score = 296 bits (761), Expect = 2e-98
Identities = 119/326 (36%), Positives = 175/326 (53%), Gaps = 22/326 (6%)
Query: 49 DDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPG 108
D VVIV+A RT I G DL + V+K V+++ + P +V +++ G VLA G
Sbjct: 6 DPVVIVSAARTIIGSFN-GALAAVPVQDLGSTVIKEVLKRATVAPEDVSEVIFGHVLAAG 64
Query: 109 STRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT 168
+ R A+ AG P +VP + C SGL+AV +I G I +A G+E+M+
Sbjct: 65 CGQNP-VRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAVQSIGIGDSSIVVAGGMENMS 123
Query: 169 VNSISVVG-----QVNPKVEIFTQARDCLL------PMGITSENVAQRFGVTRQEQDLAA 217
+ + ++ + D L MGIT+ENVA+++ V+R++QD A
Sbjct: 124 -KAPHLAYLRTGVKIGEMPLTDSILCDGLTDAFHNCHMGITAENVAKKWQVSREDQDKVA 182
Query: 218 VESHRRAAAATASGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKP 277
V S R A +G F EI+PV + + + D+ R + I ++KLKP
Sbjct: 183 VLSQNRTENAQKAGHFDKEIVPVLVS------TRKGLIEVKTDEFPRHGSNIEAMSKLKP 236
Query: 278 AFKKDGTT--TAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIG 335
F DGT T NAS ++DGA AV+LMK+S A ++GL L S+S VGV+PS+MGIG
Sbjct: 237 YFLTDGTGTVTPANASGINDGAAAVVLMKKSEADKRGLTPLARIVSWSQVGVEPSIMGIG 296
Query: 336 PAVAIPAAVKSAGLQIDDINLFEINE 361
P AI AV AG ++D+++FEINE
Sbjct: 297 PIPAIKQAVTKAGWSLEDVDIFEINE 322
>2ib8_A Acetyl-COA acetyltransferase; thiolase fold, potassium ION,
chloride, beta-alpha-beta-ALPH alpha-beta-BETA topology;
HET: MES; 1.85A {Homo sapiens} PDB: 2ib7_A* 2ib9_A*
2ibu_A* 2ibw_A* 2iby_A* 2f2s_A*
Length = 395
Score = 270 bits (692), Expect = 5e-88
Identities = 101/324 (31%), Positives = 163/324 (50%), Gaps = 20/324 (6%)
Query: 49 DDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPG 108
+VVIV+A RT I G A L + ++ IEK + EV + +G VL G
Sbjct: 8 KEVVIVSATRTPIGSF-LGSLSLLPATKLGSIAIQGAIEKAGIPKEEVKEAYMGNVLQGG 66
Query: 109 STRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT 168
+A R A AG P + P T+N+ C+SG++A+ + ++ G D+ +A G+ESM+
Sbjct: 67 EGQA-PTRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQSLMCGHQDVMVAGGMESMS 125
Query: 169 VNSISVVGQVNPK---VEIF-TQARDCL------LPMGITSENVAQRFGVTRQEQDLAAV 218
N V+ + + V++ +D L + MG +EN A++ + R EQD A+
Sbjct: 126 -NVPYVMNRGSTPYGGVKLEDLIVKDGLTDVYNKIHMGSCAENTAKKLNIARNEQDAYAI 184
Query: 219 ESHRRAAAATASGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPA 278
S+ R+ AA +GKF +E+IPV + + +D + + KLK
Sbjct: 185 NSYTRSKAAWEAGKFGNEVIPVTVT------VKGQPDVVVKEDEEYKRVDFSKVPKLKTV 238
Query: 279 FKKD-GTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPA 337
F+K+ GT TA NAS ++DGA A++LM A + + L +F+ V+P I P
Sbjct: 239 FQKENGTVTAANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAAVEPIDFPIAPV 298
Query: 338 VAIPAAVKSAGLQIDDINLFEINE 361
A +K GL+ +DI ++E+NE
Sbjct: 299 YAASMVLKDVGLKKEDIAMWEVNE 322
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.4 bits (120), Expect = 7e-07
Identities = 69/407 (16%), Positives = 113/407 (27%), Gaps = 152/407 (37%)
Query: 13 QHLQPSSSQTSDSPAISASICSAG-------EAAGYHRKPAFDDDVVIVAA--------- 56
+ L T D+ + + G E P D D ++
Sbjct: 193 ETLSELIRTTLDAE----KVFTQGLNILEWLENPS--NTP--DKDYLLSIPISCPLIGVI 244
Query: 57 ----YRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGST-- 110
Y AK GF T + L LK +V +A +
Sbjct: 245 QLAHYVVT---AKLLGF--TPGE--LRSYLKGAT-------GHSQGLVTAVAIAETDSWE 290
Query: 111 -------RAMECRMAAFYAGFP--ETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIA 161
+A+ F+ G E P S + D +++ G+
Sbjct: 291 SFFVSVRKAIT---VLFFIGVRCYEAYP------NTSLPPSILED---SLENN---EGVP 335
Query: 162 AGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMG----ITSENVAQRFGVTRQEQDLAA 217
+ M +S+ +V+ + + LP G I+ N A+ V+ Q L
Sbjct: 336 S---PM----LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYG 388
Query: 218 VESH-RRAAAATA---------------SGKF------------------------KDEI 237
+ R+A A + S +F K+ +
Sbjct: 389 LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNV 448
Query: 238 --------IPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPA-FKKDGTTTAG 288
IPV D G + R + I I D P ++ TT
Sbjct: 449 SFNAKDIQIPV----YDTFDGSDLR---VLSGSISER--IVDCIIRLPVKWET---TTQF 496
Query: 289 NASQVSD-GAGAV----LLMKRSLAVQKGLPILGVFRSFSAVGVDPS 330
A+ + D G G +L R+ G GV R A +D +
Sbjct: 497 KATHILDFGPGGASGLGVLTHRNK---DG---TGV-RVIVAGTLDIN 536
Score = 38.9 bits (90), Expect = 0.003
Identities = 58/311 (18%), Positives = 100/311 (32%), Gaps = 103/311 (33%)
Query: 57 YRTAICKAKRGGFKDTLADDLLAPVLK-AVIEKTRLNPSEVGDIVVGTVL--APGSTRAM 113
Y+T+ KA + + AD+ ++++ NP + T+ R
Sbjct: 1636 YKTS--KAAQDVWNR--ADNHFKDTYGFSILDIVINNPVNL------TIHFGGEKGKRIR 1685
Query: 114 ECRMAAFYA----GFPETVPL-RTVNRQCSS-------GL-------Q-AVADVATAI-- 151
E A + G +T + + +N +S GL Q A+ + A
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFE 1745
Query: 152 ---KAGLYDIGIA-AGL------------ESMTVNS-ISVVGQVNPKVEIFTQARDCLLP 194
GL AG + M++ S + VV R
Sbjct: 1746 DLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVV-----------FYR----- 1789
Query: 195 MGITSENVAQRFGVTRQEQDLAAVESHRRAAAATASGKFKDEIIPVNTKIVDPKTG--VE 252
G+T + R + R + A+ R AA+ F E + + V +TG VE
Sbjct: 1790 -GMTMQVAVPRDELGRSNYGMIAINPGRVAAS------FSQEALQYVVERVGKRTGWLVE 1842
Query: 253 KRVTISVDDGIRPNTTIADLAKLKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKG 312
I V+ + N AG+ + D VL + +QK
Sbjct: 1843 ----I-VNYNV-ENQQYV---------------AAGDLRAL-DTVTNVL---NFIKLQK- 1876
Query: 313 LPILGVFRSFS 323
+ I+ + +S S
Sbjct: 1877 IDIIELQKSLS 1887
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.7 bits (102), Expect = 8e-05
Identities = 59/395 (14%), Positives = 107/395 (27%), Gaps = 137/395 (34%)
Query: 41 YHRK---PAFDDDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVG 97
Y K F+D V KD D+ +L E+
Sbjct: 16 YQYKDILSVFEDAFV------------DNFDCKDVQ--DMPKSILSK---------EEID 52
Query: 98 DIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVAD-VATAIKAGLY 156
I++ + + LR S + V V ++ Y
Sbjct: 53 HIIM--------------------SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN-Y 91
Query: 157 DIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFG---VTRQEQ 213
+ + +++ Q + ++ + RD L N Q F V+R +
Sbjct: 92 KF-LMSPIKTEQR-------QPSMMTRMYIEQRDRL-------YNDNQVFAKYNVSRLQP 136
Query: 214 DLAAVESHRRAAAATASGKFKDEIIPVNTKIVDPKTGVEKRV-TISV----------DDG 262
R+A E+ P ++D G K + V D
Sbjct: 137 ----YLKLRQALL---------ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183
Query: 263 I---------RPNTTIADLAKLKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGL 313
I P T + L KL + T+ + ++S + ++ R L K
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 314 P----IL------GVFRSFSAVGV-------DPSVM-GIGPAVAIPAAVK--SAGLQIDD 353
+L + +F+ + V + A ++ S L D+
Sbjct: 244 ENCLLVLLNVQNAKAWNAFN-LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 354 -INLF----------------EINEVLVPIIAANI 371
+L N + IIA +I
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337
Score = 35.6 bits (81), Expect = 0.031
Identities = 23/206 (11%), Positives = 42/206 (20%), Gaps = 72/206 (34%)
Query: 46 AFD----------D----DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRL 91
AF+ D + A LL L L
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD--CRPQDL 318
Query: 92 NPSEVGDIVVGTVLAPGSTRAMECRM-AAFYAGFPETV-PLRTVNRQCSSGLQAVADVAT 149
P EV P + A T + VN + T
Sbjct: 319 -PREVLTT------NP-----RRLSIIAESIRDGLATWDNWKHVNCD---------KLTT 357
Query: 150 AIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENV---AQRF 206
I+ ++N + P E R + + +
Sbjct: 358 IIE--------------SSLNVL------EPA-EY----RKMFDRLSVFPPSAHIPTILL 392
Query: 207 GV-----TRQEQDLAAVESHRRAAAA 227
+ + + + + H+ +
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVE 418
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 41.8 bits (98), Expect = 3e-04
Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 294 SDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVG-------VDPSVMGIGPAVAIPAAVKS 346
+ GAG ++M+ LA++ G+PI G+ + P + A ++VK
Sbjct: 1180 AQGAGIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSVPAPGKGILTTAREHHSSVKY 1239
Query: 347 AGLQID 352
A ++
Sbjct: 1240 ASPNLN 1245
Score = 32.9 bits (75), Expect = 0.18
Identities = 7/36 (19%), Positives = 14/36 (38%)
Query: 137 CSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSI 172
C++ +++V I +G I I G +
Sbjct: 1106 CATSVESVDIGVETILSGKARICIVGGYDDFQEEGS 1141
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 39.5 bits (92), Expect = 0.002
Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 4/66 (6%)
Query: 294 SDGAGAVLLMKRSLAVQKGLPILGVFRSFS----AVGVDPSVMGIGPAVAIPAAVKSAGL 349
S G G ++M LA++ G+PI G+ S +G G G +
Sbjct: 1354 SQGCGVQVIMTAQLALEMGVPIYGIVAMTSTATDKIGRSVPAPGQGVLTTAREKSGNFPS 1413
Query: 350 QIDDIN 355
+ DI
Sbjct: 1414 PLLDIK 1419
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.044
Identities = 8/47 (17%), Positives = 16/47 (34%), Gaps = 21/47 (44%)
Query: 109 STRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGL 155
+ + ++ + YA ++ P A AIKA +
Sbjct: 21 ALKKLQASLK-LYA--DDSAP------------------ALAIKATM 46
Score = 31.1 bits (69), Expect = 0.29
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 12/36 (33%)
Query: 2 EKALHRQRILLQHLQPSSSQ--TSDS-PA--ISASI 32
EK Q + + LQ +S + DS PA I A++
Sbjct: 18 EK----QAL--KKLQ-ASLKLYADDSAPALAIKATM 46
Score = 29.5 bits (65), Expect = 1.1
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 11/35 (31%)
Query: 58 RTAICKAKRGGFKDTL---ADDLLAPVL--KAVIE 87
+ A+ K+ + +L ADD AP L KA +E
Sbjct: 19 KQAL---KK--LQASLKLYADDS-APALAIKATME 47
Score = 29.5 bits (65), Expect = 1.1
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 15/43 (34%)
Query: 304 KRSLAVQKGLPI-LGVFRSFSAVGVDPSVMGIGPAVAIPAAVK 345
K++L K L L ++ SA PA+AI A ++
Sbjct: 19 KQAL---KKLQASLKLYADDSA-----------PALAIKATME 47
>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase,
acyltransferase, phosphopantetheine, transfera; 2.59A
{Saccharopolyspora erythraea}
Length = 915
Score = 34.5 bits (80), Expect = 0.063
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 294 SDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGI----GPA--VAIPAAVKSA 347
S+G VLL + S A + G +L V R SA+ D + G+ GPA I A++S
Sbjct: 241 SEGVTLVLLERLSEARRNGHEVLAVVRG-SALNQDGASNGLSAPSGPAQRRVIRQALESC 299
Query: 348 GLQIDDINLFE 358
GL+ D++ E
Sbjct: 300 GLEPGDVDAVE 310
>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase,
acyltransferase, module 5, transferase; 2.73A
{Saccharopolyspora erythraea}
Length = 917
Score = 34.5 bits (80), Expect = 0.065
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 7/71 (9%)
Query: 294 SDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGI----GPA--VAIPAAVKSA 347
++GAG ++L + S A ++G P+L V R SAV D + G+ GPA I A+++A
Sbjct: 263 AEGAGVLVLQRLSAARREGRPVLAVLRG-SAVNQDGASNGLTAPSGPAQQRVIRRALENA 321
Query: 348 GLQIDDINLFE 358
G++ D++ E
Sbjct: 322 GVRAGDVDYVE 332
>1xes_A Dihydropinosylvin synthase; native structure, transferase; HET:
3IO; 1.70A {Pinus sylvestris} PDB: 1xet_A* 1u0u_A
Length = 413
Score = 34.2 bits (78), Expect = 0.065
Identities = 9/97 (9%), Positives = 25/97 (25%), Gaps = 1/97 (1%)
Query: 74 ADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTV 133
L + I++ + S + ++ + + +A P +
Sbjct: 125 VPRLAKEAAEKAIQEWGQSKSGITHLIFCST-TTPDLPGADFEVAKLLGLHPSVKRVGVF 183
Query: 134 NRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVN 170
C +G + + + E+ V
Sbjct: 184 QHGCFAGGTVLRMAKDLAENNRGARVLVICSETTAVT 220
>2d3m_A Pentaketide chromone synthase; chalcone synthase, polyketide
synthase, transferase; HET: COA; 1.60A {Aloe
arborescens} PDB: 2d51_A 2d52_A*
Length = 406
Score = 32.7 bits (74), Expect = 0.20
Identities = 13/98 (13%), Positives = 25/98 (25%), Gaps = 3/98 (3%)
Query: 74 ADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTV 133
L IE+ SE+ +V T + + + A G V +
Sbjct: 115 VPALGTEAAVKAIEEWGRPKSEITHLVFCTS-CGVDMPSADFQCAKLL-GLHANVNKYCI 172
Query: 134 NRQ-CSSGLQAVADVATAIKAGLYDIGIAAGLESMTVN 170
Q +G + + + E +
Sbjct: 173 YMQGAYAGGTVMRYAKDLAENNRGARVLVVCAELTIMM 210
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 32.6 bits (74), Expect = 0.22
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 294 SDGAGAVLLMKRSLAVQKGLPILGVFRSFS----AVGVDPSVMGIGPAVAIPAAVKSAGL 349
+ GAG ++M+ LA++ G+PI G+ + +G G G S
Sbjct: 1379 AQGAGIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSVPAPGKGILTTAREHHSSVKY 1438
Query: 350 QIDDINL 356
++N+
Sbjct: 1439 ASPNLNM 1445
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain,
CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus
denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Length = 595
Score = 32.2 bits (73), Expect = 0.33
Identities = 20/105 (19%), Positives = 35/105 (33%), Gaps = 23/105 (21%)
Query: 198 TSENVAQRFGVTRQEQDLAAVESHRRAAAATASGKFKDEIIPVNTKIVDPKTGVEKRVT- 256
SE +T E D V + A A+G ++ E+ V K+VD + T
Sbjct: 215 NSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQ-ELNGV--KVVDGRKEASSLFTR 271
Query: 257 ----------ISVD-DGIR--------PNTTIADLAKLKPAFKKD 282
++ D P T+ D+ + F ++
Sbjct: 272 YIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYEN 316
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2,
protein struct initiative, northeast structural genomics
consortium, NESG; 1.63A {Escherichia coli} SCOP:
a.35.1.3 PDB: 2icp_A
Length = 94
Score = 28.8 bits (65), Expect = 0.83
Identities = 2/23 (8%), Positives = 9/23 (39%)
Query: 189 RDCLLPMGITSENVAQRFGVTRQ 211
++ L + ++ A+ +
Sbjct: 14 QESLDELNVSLREFARAMEIAPS 36
>3a5r_A Benzalacetone synthase; chalcone synthase, type III polyketide
synthase, transferase, acyltransferase; HET: HC4; 1.60A
{Rheum palmatum} PDB: 3a5q_A* 3a5s_A
Length = 387
Score = 30.3 bits (68), Expect = 1.0
Identities = 12/101 (11%), Positives = 27/101 (26%), Gaps = 9/101 (8%)
Query: 74 ADDLLAPVLKAVIEKTRLNPSEVGDIVVGT---VLAPGSTRAMECRMAAFYAGFPETVPL 130
+L I++ S++ ++V V PG + ++ +V
Sbjct: 98 VAELGKEAALKAIKEWGQPKSKITHLIVCCLAGVDMPG----ADYQLTKLL-DLDPSVKR 152
Query: 131 RTVNRQ-CSSGLQAVADVATAIKAGLYDIGIAAGLESMTVN 170
C +G + + + E T
Sbjct: 153 FMFYHLGCYAGGTVLRLAKDIAENNKGARVLIVCSEMTTTC 193
>3lma_A Stage V sporulation protein AD (spovad); NESG, structural genomics,
PSI-2, protein structure initiative; 1.99A {Bacillus
licheniformis} PDB: 3lm6_A
Length = 347
Score = 30.0 bits (68), Expect = 1.1
Identities = 21/135 (15%), Positives = 46/135 (34%), Gaps = 25/135 (18%)
Query: 46 AFDDDVVIVAAYRTAICKAKRGGFK---DTLADD--------------LLAPVLKAVIEK 88
F++ + + ++ K K G D D+ L+ +++ + K
Sbjct: 10 EFENPLFVNSSGTAVGPKEKEGPLGHLFDKSYDEMHCNQKNWEMAERKLMEDAVQSALSK 69
Query: 89 TRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVA 148
L ++ + G +L T R +P + CS+ ++++A +
Sbjct: 70 QNLKKEDIDIFLAGDLLNQNVTANYVARHLK--------IPFLCLFGACSTSMESIAISS 121
Query: 149 TAIKAGLYDIGIAAG 163
I G +AA
Sbjct: 122 ALIDGGFAKRALAAT 136
>2gp6_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiolase fold,
structural genomics, PSI, protein structure initiative;
2.40A {Mycobacterium tuberculosis}
Length = 434
Score = 30.2 bits (69), Expect = 1.2
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 9/56 (16%)
Query: 137 CSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCL 192
C+SG +A+A I G D I G+E+ + ++ + G F Q R +
Sbjct: 187 CASGAEAIARAWQQIVLGEADAAICGGVET-RIEAVPIAG--------FAQMRIVM 233
>3cec_A Putative antidote protein of plasmid maintenance; structural
genomics, joint center for structural genomics, J
protein structure initiative; HET: MSE; 1.60A {Nostoc
punctiforme}
Length = 104
Score = 28.4 bits (64), Expect = 1.5
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 189 RDCLLPMGITSENVAQRFGVTRQ 211
D L + I + N A+ GV+ Q
Sbjct: 24 ADILDDLDINTANFAEILGVSNQ 46
>4ddo_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgcid, struct
genomics, seattle structural genomics center for
infectious transferase; 1.90A {Burkholderia
vietnamiensis} PDB: 4f32_A*
Length = 451
Score = 29.8 bits (68), Expect = 1.5
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 137 CSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVG 176
C++ +QA+ D I+ G D+ +A G E+ + +S+ G
Sbjct: 193 CAASVQAIGDAMRMIRTGEADVVLAGGAEA-AFDKVSLGG 231
>3kzu_A 3-oxoacyl-(acyl-carrier-protein) synthase II; seattle structural
genomics center for infectious disease, ssgcid,
acyltransferase; 1.75A {Brucella melitensis} PDB: 3e60_A
Length = 428
Score = 29.8 bits (68), Expect = 1.7
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 137 CSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVG 176
C++G A+ D A I G D+ +A G ES V+ IS+ G
Sbjct: 178 CATGTHAIGDAARLIAFGDADVMVAGGTES-PVSRISLAG 216
>2ix4_A 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ketoacyl-(acyl
carrier protein) synthase, lipid metabol condensing
enzyme; 1.95A {Arabidopsis thaliana} SCOP: c.95.1.1
c.95.1.1 PDB: 1w0i_A
Length = 431
Score = 29.5 bits (67), Expect = 1.8
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 137 CSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVG 176
C++G ++ D I+ G D+ +A G ES +++++SV G
Sbjct: 179 CATGAHSIGDATRMIQFGDADVMVAGGTES-SIDALSVAG 217
>2wge_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta ketoacyl synthase
I thiolactomycin, cytoplasm, transferase,
acyltransferase; HET: TLM; 1.80A {Mycobacterium
tuberculosis} PDB: 2wgd_A* 2wgg_A* 2wgf_A*
Length = 416
Score = 29.4 bits (67), Expect = 2.0
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 137 CSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVG 176
CSSG +A+A I G D+ + G+E + ++ +
Sbjct: 171 CSSGSEAIAHAWRQIVMGDADVAVCGGVEG-PIEALPIAA 209
>2gqd_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; duplicated babababb
fold, transferase; 2.30A {Staphylococcus aureus}
Length = 437
Score = 29.5 bits (67), Expect = 2.1
Identities = 8/40 (20%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 137 CSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVG 176
C++G ++ + ++ G D I G E+ + +++ G
Sbjct: 188 CATGTNSIGEAFKIVQRGDADAMITGGTEA-PITHMAIAG 226
Score = 28.3 bits (64), Expect = 4.4
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 294 SDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVG-----VDPSVMGIGPAVAIPAAVKSAG 348
+GAG +++ A +G I + G P+ G G + A+ AA+ AG
Sbjct: 256 GEGAGILVIESLESAQARGANIYAEIVGYGTTGDAYHITAPAPEGEGGSRAMQAAMDDAG 315
Query: 349 LQIDDIN 355
++ D+
Sbjct: 316 IEPKDVQ 322
>1xrt_A Dihydroorotase, dhoase; amidohydrolase, metalloenzyme, pyrimidine;
1.61A {Aquifex aeolicus} SCOP: b.92.1.3 c.1.9.6 PDB:
1xrf_A 3d6n_A*
Length = 467
Score = 29.5 bits (67), Expect = 2.3
Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 15/62 (24%)
Query: 241 NTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKKDGTTTAGNASQVSDGAGAV 300
N ++DP +E I V++G I + +++ D G +
Sbjct: 53 NGYVIDPSQNLEGEFDILVENGK-----IKKI----------DKNILVPEAEIIDAKGLI 97
Query: 301 LL 302
+
Sbjct: 98 VC 99
>3o04_A LMO2201 protein, beta-keto-acyl carrier protein synthase II; csgid,
structural genomics; 1.85A {Listeria monocytogenes}
Length = 413
Score = 29.0 bits (66), Expect = 2.3
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 137 CSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVG 176
C++ ++ D I+ G D I G E+ + +S+ G
Sbjct: 164 CATATNSIGDAFKVIERGDADAMITGGAEA-PITKMSLAG 202
Score = 27.9 bits (63), Expect = 5.3
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 294 SDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVG-----VDPSVMGIGPAVAIPAAVKSAG 348
+GAG V+L + A +G I + A G P+ G G A A+ A+ AG
Sbjct: 232 GEGAGIVILEEYEHAKARGAKIYAEIVGYGATGDAYHITAPAPNGEGAARAMKMAIDDAG 291
Query: 349 LQIDDIN 355
L D ++
Sbjct: 292 LTPDKVD 298
>1e5m_A KAS II, beta ketoacyl acyl carrier protein synthase II; condensing
enzyme, biosynthetic role, carbon-carbon bond formation;
1.54A {Synechocystis SP} SCOP: c.95.1.1 c.95.1.1
Length = 416
Score = 29.0 bits (66), Expect = 2.5
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 137 CSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVG 176
C++G A+ D ++ G I G E+ + +S G
Sbjct: 167 CAAGSNAIGDAFRLVQNGYAKAMICGGTEA-AITPLSYAG 205
Score = 28.6 bits (65), Expect = 3.4
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 294 SDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVG-----VDPSVMGIGPAVAIPAAVKSAG 348
+G+G ++L + A+ +G I G ++ P G G AI A+K +G
Sbjct: 236 GEGSGILILEELESALARGAKIYGEMVGYAMTCDAYHITAPVPDGRGATRAIAWALKDSG 295
Query: 349 LQIDDIN 355
L+ + ++
Sbjct: 296 LKPEMVS 302
>1j3n_A 3-oxoacyl-(acyl-carrier protein) synthase II; condensing enzymes,
fatty acid elongation, acyl-carrier protein (ACP); HET:
CIT; 2.00A {Thermus thermophilus} SCOP: c.95.1.1
c.95.1.1
Length = 408
Score = 29.0 bits (66), Expect = 2.7
Identities = 9/40 (22%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 137 CSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVG 176
C++G A+ I+ G D+ +A G E+ + +++
Sbjct: 161 CATGADALGSALRMIQLGEADLVLAGGTEA-AITPMAIGA 199
Score = 28.6 bits (65), Expect = 3.6
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 294 SDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVG-----VDPSVMGIGPAVAIPAAVKSAG 348
+GAG ++L A ++G I F +P G G A+A+ A+K AG
Sbjct: 230 GEGAGVLVLEAYEHAKKRGARIYAELVGFGRSADAHHITEPHPEGKGAALAMARALKDAG 289
Query: 349 LQIDDIN 355
+ + +
Sbjct: 290 IAPEQVG 296
>3ho9_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, platensimycin,
platencin A1, KAS2, acyltransferase, fatty acid
biosynthesis; HET: N3A; 1.90A {Escherichia coli} PDB:
3hnz_A* 3ho2_A* 3i8p_A* 3g11_A* 2gfx_A* 3g0y_A* 2gfv_A*
2gfw_A 2gfy_A* 1kas_A 1b3n_A
Length = 427
Score = 29.1 bits (66), Expect = 2.8
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 137 CSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVG 176
+SG+ + A I G D+ +A G E + V G
Sbjct: 178 ATSGVHNIGHAARIIAYGDADVMVAGGAEK-ASTPLGVGG 216
Score = 29.1 bits (66), Expect = 3.0
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 294 SDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVG-----VDPSVMGIGPAVAIPAAVKSAG 348
DGAG ++L + A ++G I F P G G A+A+ A++ AG
Sbjct: 247 GDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAG 306
Query: 349 LQIDDIN 355
++ I
Sbjct: 307 IEASQIG 313
>2iwz_A 3-oxoacyl-[acyl-carrier-protein] synthase; mitochondria,
mitochondrion, lipid synthesis, fatty acid SYN fatty
acid biosynthesis; 1.65A {Homo sapiens} PDB: 2iwy_A
2c9h_A
Length = 438
Score = 29.0 bits (66), Expect = 3.0
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 137 CSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVG 176
C++G AV D I G D+ +A G +S ++ +S+ G
Sbjct: 188 CTTGAHAVGDSFRFIAHGDADVMVAGGTDS-CISPLSLAG 226
Score = 27.5 bits (62), Expect = 7.7
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 294 SDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVD------PSVMGIGPAVAIPAAVKSA 347
+GA ++L + AVQ+ I + G D P G G + AA+K A
Sbjct: 256 GEGAAVLVLEEYEHAVQRRARIYAEVLGYGLSG-DAGHITAPDPEGEGALRCMAAALKDA 314
Query: 348 GLQIDDIN 355
G+Q ++I+
Sbjct: 315 GVQPEEIS 322
>3nvz_C Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine
oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE
I3A; 1.60A {Bos taurus} PDB: 3ns1_C* 3etr_C* 3nvv_C*
3nvw_C* 3nrz_C* 3nvy_C* 3eub_C* 3b9j_C* 1fiq_C* 3rca_C*
3sr6_C*
Length = 755
Score = 29.2 bits (66), Expect = 3.0
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 317 GVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEVLVPIIAANIM 372
++ S AVG P +G AI A+++A Q + N E+ + P I
Sbjct: 682 AIYAS-KAVGEPPLFLGASVFFAIKDAIRAARAQHTNNNTKELFRLDSPATPEKIR 736
>1ox0_A Beta ketoacyl-acyl carrier protein synthase; transferase; 1.30A
{Streptococcus pneumoniae} SCOP: c.95.1.1 c.95.1.1 PDB:
1oxh_A 2alm_A 2rjt_A
Length = 430
Score = 28.6 bits (65), Expect = 3.2
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 137 CSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVG 176
CSS A+ D +IK G D+ + G E+ ++ ++ G
Sbjct: 183 CSSSNDAIGDAFRSIKFGFQDVMLVGGTEA-SITPFAIAG 221
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical
protein, JW0472, structural genomics, NPPSFA; 2.25A
{Escherichia coli}
Length = 113
Score = 27.1 bits (60), Expect = 3.9
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 188 ARDCLLPMGITSENVAQRFGVTRQ 211
+ L P+ + +A+ V R
Sbjct: 16 LYEYLEPLDLKINELAELLHVHRN 39
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element
functions, DNA binding P; 2.00A {Coxiella burnetii}
Length = 104
Score = 27.0 bits (60), Expect = 4.7
Identities = 2/24 (8%), Positives = 9/24 (37%)
Query: 188 ARDCLLPMGITSENVAQRFGVTRQ 211
A + +++ +A+ +
Sbjct: 19 AEELGFLDKMSANQLAKHLAIPTN 42
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 28.0 bits (62), Expect = 5.6
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Query: 317 GVFR--SFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDI 354
GV+ + S G+D VM +G V A + D+
Sbjct: 318 GVYSPVALSKYGIDVPVMNLGLGVERLAMIS---GNFADV 354
>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein
structure initiati northeast structural genomics
consortium; 1.79A {Legionella pneumophila subsp}
Length = 265
Score = 27.6 bits (62), Expect = 5.7
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 232 KFKDEIIPVNTKIVDPKTGVEKRVT 256
K + EI+ + + VDP ++
Sbjct: 101 KLRKEIVTMGVQKVDPSYNAGTYLS 125
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL;
1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A*
1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A*
2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B*
3b9j_A* 1fiq_A*
Length = 1332
Score = 28.3 bits (63), Expect = 5.7
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 317 GVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEVLVPIIAANIM 372
++ S AVG P +G AI A+++A Q + N E+ + P I
Sbjct: 1252 AIYAS-KAVGEPPLFLGASVFFAIKDAIRAARAQHTNNNTKELFRLDSPATPEKIR 1306
>3oit_A OS07G0271500 protein; type III polyketide synthases, transferase;
2.00A {Oryza sativa} PDB: 3ale_A
Length = 387
Score = 27.9 bits (62), Expect = 6.1
Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 9/85 (10%)
Query: 74 ADDLLAPVLKAVIEKTRLNPSEVGDIVVGT---VLAPGSTRAMECRMAAFYAGFPETVPL 130
+L A K I + +++ +VV T PG + + G +V
Sbjct: 96 VPELAAEAAKKAIAEWGRPAADITHLVVTTNSGAHVPGVDFRLVPLL-----GLRPSVRR 150
Query: 131 RTVNRQ-CSSGLQAVADVATAIKAG 154
++ C +G A+ +
Sbjct: 151 TMLHLNGCFAGCAALRLAKDLAENS 175
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 28.0 bits (62), Expect = 6.5
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 5/40 (12%)
Query: 317 GVFRS--FSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDI 354
GV+ S G+D VM +G V A + D+
Sbjct: 318 GVYSPVALSKYGIDVPVMNLGLGVERLAMIS---GNFADV 354
>4ewg_A Beta-ketoacyl synthase; ssgcid, structural genomics, seattle
structural genomics CEN infectious disease, transferase;
2.25A {Burkholderia phymatum}
Length = 412
Score = 27.5 bits (62), Expect = 7.4
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 137 CSSGLQAVADVATAIKAGLYDIGIAAGLES 166
C+SG QA+ I G + +A G E
Sbjct: 168 CASGSQAIGYAYENIAMGKQTLMLAGGAEE 197
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 27.5 bits (61), Expect = 9.1
Identities = 16/76 (21%), Positives = 25/76 (32%), Gaps = 20/76 (26%)
Query: 294 SDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVD---------PSVMGIGPA--VAIPA 342
++ AVLL K+SLA + + + D PS G I +
Sbjct: 225 AEAVVAVLLTKKSLA----RRVYATILN-AGTNTDGSKEQGVTFPS----GDVQEQLIRS 275
Query: 343 AVKSAGLQIDDINLFE 358
AG + + E
Sbjct: 276 LYAPAGPDPESLEYIE 291
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty
acid synthesis, acetylation, cytoplasm, fatty acid
biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB:
2jfk_A* 2jfd_A
Length = 965
Score = 27.5 bits (62), Expect = 9.4
Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 22/77 (28%)
Query: 294 SDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVD---------PSVMGIGPA---VAIP 341
S+G AVLL K+SLA + + + D PS G + I
Sbjct: 227 SEGVVAVLLTKKSLAR----RVYATILN-AGTNTDGFKEQGVTFPS----GDIQEQL-IR 276
Query: 342 AAVKSAGLQIDDINLFE 358
+ +SAG+ + E
Sbjct: 277 SLYQSAGVAPESFEYIE 293
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.366
Gapped
Lambda K H
0.267 0.0770 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,742,461
Number of extensions: 372550
Number of successful extensions: 1057
Number of sequences better than 10.0: 1
Number of HSP's gapped: 995
Number of HSP's successfully gapped: 106
Length of query: 374
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 279
Effective length of database: 4,049,298
Effective search space: 1129754142
Effective search space used: 1129754142
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.0 bits)