RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 017304
(374 letters)
>d1m3ka1 c.95.1.1 (A:1-268) Biosynthetic thiolase {Zoogloea ramigera
[TaxId: 350]}
Length = 268
Score = 205 bits (523), Expect = 5e-65
Identities = 100/274 (36%), Positives = 146/274 (53%), Gaps = 18/274 (6%)
Query: 49 DDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPG 108
+VI +A RTA+ G F +T A +L A V+ AV+E+ + EV ++++G VL G
Sbjct: 3 PSIVIASAARTAVGSFN-GAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAG 61
Query: 109 STRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT 168
R AA AG P+ +N+ SGL+AVA I G I +A G+ESM+
Sbjct: 62 EG-QNPARQAAMKAGVPQEATAWGMNQLAGSGLRAVALGMQQIATGDASIIVAGGMESMS 120
Query: 169 VNSISVVGQVNPKVEIFTQARDCL----------LPMGITSENVAQRFGVTRQEQDLAAV 218
+ + K+ F + MG T+ENVA+++ ++R EQD AV
Sbjct: 121 MAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAV 180
Query: 219 ESHRRAAAATASGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPA 278
S +A AA G+FKDEI+P K G + +T+ D+ IR T+ +AKL+PA
Sbjct: 181 ASQNKAEAAQKDGRFKDEIVPFIVK------GRKGDITVDADEYIRHGATLDSMAKLRPA 234
Query: 279 FKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKG 312
F K+GT TAGNAS ++DGA A LLM + A ++G
Sbjct: 235 FDKEGTVTAGNASGLNDGAAAALLMSEAEASRRG 268
>d1ulqa1 c.95.1.1 (A:3-275) Beta-ketoadipyl CoA thiolase {Thermus
thermophilus [TaxId: 274]}
Length = 273
Score = 194 bits (494), Expect = 1e-60
Identities = 103/280 (36%), Positives = 143/280 (51%), Gaps = 23/280 (8%)
Query: 50 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGS 109
+ IV A RT I K G DDLLA L +++++ + EV D+ G G
Sbjct: 1 EAWIVEAVRTPIGKHG-GALASVRPDDLLAHALSVLVDRSGVPKEEVEDVYAGCANQAGE 59
Query: 110 TRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTV 169
RMA AGFP V TVNR C SGL+AVA A AI AG + I +G+ESM+
Sbjct: 60 DNRNVARMALLLAGFPVEVAGCTVNRLCGSGLEAVAQAARAIWAGEGKVYIGSGVESMSR 119
Query: 170 NSISVVGQVNPK----------------VEIFTQARDCLLPMGITSENVAQRFGVTRQEQ 213
+V V QA MG T+EN+A+ +G+ R+EQ
Sbjct: 120 APYAVPKPERGFPTGNLVMYDTTLGWRFVNPKMQALYGTESMGETAENLAEMYGIRREEQ 179
Query: 214 DLAAVESHRRAAAATASGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLA 273
D A+ SH++A A G+F+DE++PV K + VE+ D+G R +T++ LA
Sbjct: 180 DRFALLSHQKAVRAWEEGRFQDEVVPVPVKRGKEEILVEQ------DEGPRRDTSLEKLA 233
Query: 274 KLKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGL 313
L+P F++ GT TAGN+S ++DGA AVLL+ A GL
Sbjct: 234 ALRPVFREGGTVTAGNSSPLNDGAAAVLLVSDDYAKAHGL 273
>d1afwa1 c.95.1.1 (A:25-293) Thiolase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 269
Score = 178 bits (451), Expect = 3e-54
Identities = 115/268 (42%), Positives = 156/268 (58%), Gaps = 18/268 (6%)
Query: 49 DDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEK----TRLNPSEVGDIVVGTV 104
+DVVIVAA R+AI K +G FKD D LL L I + R + + + ++ G V
Sbjct: 10 EDVVIVAANRSAIGKGFKGAFKDVNTDYLLYNFLNEFIGRFPEPLRADLNLIEEVACGNV 69
Query: 105 LAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGL 164
L A E R A +G P + P +NRQCSSGL AV D+A IK G DIG+A G+
Sbjct: 70 L-NVGAGATEHRAACLASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALGV 128
Query: 165 ESMTVNSISVV---GQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLAAVESH 221
ESMT N +V + +++ +A+ CL+PMGIT+ENVA F ++R++QD A S+
Sbjct: 129 ESMTNNYKNVNPLGMISSEELQKNREAKKCLIPMGITNENVAANFKISRKDQDEFAANSY 188
Query: 222 RRAAAATASGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKK 281
++A A G F+DEI+P+ + D+G RPN T L+ ++PAF K
Sbjct: 189 QKAYKAKNEGLFEDEILPIK---------LPDGSICQSDEGPRPNVTAESLSSIRPAFIK 239
Query: 282 D-GTTTAGNASQVSDGAGAVLLMKRSLA 308
D GTTTAGNASQVSDG VLL +RS+A
Sbjct: 240 DRGTTTAGNASQVSDGVAGVLLARRSVA 267
>d1wdkc1 c.95.1.1 (C:2-263) Fatty oxidation complex beta subunit
(3-ketoacyl-CoA thiolase) {Pseudomonas fragi [TaxId:
296]}
Length = 262
Score = 167 bits (424), Expect = 2e-50
Identities = 94/262 (35%), Positives = 144/262 (54%), Gaps = 9/262 (3%)
Query: 49 DDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEK-TRLNPSEVGDIVVGTVLAP 107
DVVIV RT + ++K G ++T A+D+ A ++ V+E+ ++++P EV D++ G V
Sbjct: 5 RDVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKVLERNSKVDPGEVEDVIWGCVNQT 64
Query: 108 GSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESM 167
RMA+ P T +TV+R C S + A+ A AI G D+ + G+E M
Sbjct: 65 LEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHM 124
Query: 168 TVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLAAVESHRRAAAA 227
+S++ V+P + A MG+T+E + + G++R++QD AV SH+ A A
Sbjct: 125 GH--VSMMHGVDPNPHMSLYAAKASGMMGLTAEMLGKMHGISREQQDAFAVRSHQLAHKA 182
Query: 228 TASGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFK-KDGTTT 286
T GKFKDEIIP+ + D+ IRP+TT+ LA LKPAF K GT T
Sbjct: 183 TVEGKFKDEIIPMQGYDENGFL-----KIFDYDETIRPDTTLESLAALKPAFNPKGGTVT 237
Query: 287 AGNASQVSDGAGAVLLMKRSLA 308
AG +SQ++DGA +++M A
Sbjct: 238 AGTSSQITDGASCMIVMSAQRA 259
>d1afwa2 c.95.1.1 (A:294-417) Thiolase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 124
Score = 54.5 bits (131), Expect = 6e-10
Identities = 28/61 (45%), Positives = 38/61 (62%)
Query: 312 GLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEVLVPIIAANI 371
LP+LG + F VGV P +MG+GPA AIP +++ GLQ+ DI++FEINE I
Sbjct: 2 NLPVLGRYIDFQTVGVPPEIMGVGPAYAIPKVLEATGLQVQDIDIFEINEAFAAQALYCI 61
Query: 372 M 372
Sbjct: 62 H 62
>d1m3ka2 c.95.1.1 (A:269-392) Biosynthetic thiolase {Zoogloea
ramigera [TaxId: 350]}
Length = 124
Score = 50.7 bits (121), Expect = 1e-08
Identities = 24/55 (43%), Positives = 31/55 (56%)
Query: 316 LGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEVLVPIIAAN 370
LG S++ VGVDP VMG GP A A++ AG +I D++L E NE A
Sbjct: 4 LGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAV 58
>d1wdkc2 c.95.1.1 (C:264-391) Fatty oxidation complex beta subunit
(3-ketoacyl-CoA thiolase) {Pseudomonas fragi [TaxId:
296]}
Length = 128
Score = 47.3 bits (112), Expect = 2e-07
Identities = 25/61 (40%), Positives = 33/61 (54%)
Query: 312 GLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEVLVPIIAANI 371
GL L V RS + GVDP++MG GP A A+K AGL + DI+ E+NE +
Sbjct: 1 GLEPLAVIRSMAVAGVDPAIMGYGPVPATQKALKRAGLNMADIDFIELNEAFAAQALPVL 60
Query: 372 M 372
Sbjct: 61 K 61
>d1ulqa2 c.95.1.1 (A:276-400) Beta-ketoadipyl CoA thiolase {Thermus
thermophilus [TaxId: 274]}
Length = 125
Score = 45.0 bits (106), Expect = 1e-06
Identities = 21/56 (37%), Positives = 29/56 (51%)
Query: 316 LGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEVLVPIIAANI 371
L R+ + GV P +MGIGP A A++ AGL D+ L E+NE A +
Sbjct: 3 LARVRAIAVAGVPPRIMGIGPVPATRKALERAGLSFSDLGLIELNEAFAAQALAVL 58
>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal
domain {Paracoccus denitrificans [TaxId: 266]}
Length = 459
Score = 35.1 bits (81), Expect = 0.011
Identities = 21/120 (17%), Positives = 39/120 (32%), Gaps = 23/120 (19%)
Query: 199 SENVAQRFGVTRQEQDLAAVESHRRAAAATASGKFKDEIIPVNTKIVDPKTGVEKRVTIS 258
SE +T E D V + A A+G ++ E+ V K+VD + T
Sbjct: 214 SEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQ-ELNGV--KVVDGRKEASSLFTRY 270
Query: 259 VDDGIRPN--------------------TTIADLAKLKPAFKKDGTTTAGNASQVSDGAG 298
+ P+ T+ D+ + F ++ + ++ G G
Sbjct: 271 IPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLG 330
>d1tqyb1 c.95.1.1 (B:2-209) Actinorhodin polyketide putative
beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor
[TaxId: 1902]}
Length = 208
Score = 29.3 bits (64), Expect = 0.51
Identities = 7/32 (21%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 136 QCSSGLQAVADVATAIKAGLYDIGIAAGLESM 167
+ + GL A+ I+ G + ++ G++S
Sbjct: 159 EQAGGLDALGHARRTIRRG-TPLVVSGGVDSA 189
>d2zjrr1 b.34.5.1 (R:4-113) Ribosomal proteins L24 (L24p)
{Deinococcus radiodurans [TaxId: 1299]}
Length = 110
Score = 27.4 bits (61), Expect = 1.1
Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 218 VESHRRAAAATASGKFKDEIIPV---NTKIVDPKTGVEKRVTISVDDG 262
+ + + + G + + + +VDP+TG RV + DG
Sbjct: 51 ITKNVKPSMTNPQGGQEQRELALHASKVALVDPETGKATRVRKQIVDG 98
>d1tqya2 c.95.1.1 (A:219-423) Actinorhodin polyketide putative
beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor
[TaxId: 1902]}
Length = 205
Score = 27.9 bits (61), Expect = 1.6
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 294 SDGAGAVLLMKRSLAVQKGLPILGVFR 320
++GA +L A+ +G I
Sbjct: 20 AEGAAMFVLEDYDSALARGARIHAEIS 46
>d1nbwa2 c.55.1.6 (A:2-91,A:257-405) ATPase domain of the glycerol
dehydratase reactivase alpha subunit {Klebsiella
pneumoniae [TaxId: 573]}
Length = 239
Score = 27.0 bits (60), Expect = 3.3
Identities = 9/57 (15%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 312 GLPILGVFRSFSAVGVDPSVMGIGPAV-AIPAAVKSAGLQIDDINLFEINEVLVPII 367
+ + G+ + I + A+ A+ + D++ +NE P+I
Sbjct: 24 ARAFVASGIVATT-GMKGTRDNIAGTLAALEQALAKTPWSMSDVSRIYLNEA-APVI 78
>d1xzpa1 a.24.25.1 (A:118-211,A:372-450) TrmE connector domain
{Thermotoga maritima [TaxId: 2336]}
Length = 173
Score = 26.7 bits (58), Expect = 3.9
Identities = 5/63 (7%), Positives = 22/63 (34%)
Query: 219 ESHRRAAAATASGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPA 278
E+ + + G +D + + ++++ + + + + L ++K
Sbjct: 18 ETSLKLSLRNLKGGLRDFVDSLRRELIEVLAEIRVELDYPDEIETNTGEVVTRLERIKEK 77
Query: 279 FKK 281
+
Sbjct: 78 LTE 80
>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640
{Mycobacterium leprae [TaxId: 1769]}
Length = 297
Score = 27.1 bits (59), Expect = 4.0
Identities = 16/68 (23%), Positives = 23/68 (33%)
Query: 52 VIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTR 111
V+VAA R A +D A L+ + + L+PS V + A
Sbjct: 6 VMVAAARAAETDRPDALIRDPYAKLLVTNTGAGALWEAMLDPSMVAKVEAIDAEAAAMVE 65
Query: 112 AMECRMAA 119
M A
Sbjct: 66 HMRSYQAV 73
>d2gycs1 b.34.5.1 (S:3-101) Ribosomal proteins L24 (L24p)
{Escherichia coli [TaxId: 562]}
Length = 99
Score = 25.4 bits (56), Expect = 4.3
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 241 NTKIVDPKTGVEKRVTISVDDG 262
N I + TG RV +DG
Sbjct: 66 NVAIFNAATGKADRVGFRFEDG 87
>d2nn6h1 b.40.4.5 (H:73-167) S1-domain of Ribosomal RNA-processing
protein 4, RRP4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 25.7 bits (56), Expect = 4.3
Identities = 11/17 (64%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
Query: 88 KTRLNPSEVGDIVVGTV 104
KTR EVGDIVVG +
Sbjct: 1 KTRYIG-EVGDIVVGRI 16
>d2c1ia1 c.6.2.3 (A:268-463) Peptidoglycan GlcNAc deacetylase
C-terminal domain {Streptococcus pneumoniae [TaxId:
1313]}
Length = 196
Score = 26.3 bits (57), Expect = 6.0
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 253 KRVTISVDDGIRPNTTIADLAKLK 276
K V ++ +DG P TT L L
Sbjct: 1 KVVALTFNDGPNPATTPQVLETLA 24
>d2ix4a1 c.95.1.1 (A:31-300) Beta-ketoacyl-ACP synthase II {Thale
cress (Arabidopsis thaliana), mitochondrial isoform
[TaxId: 3702]}
Length = 270
Score = 26.1 bits (56), Expect = 6.2
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 294 SDGAGAVLLMKRSLAVQKGLPI 315
+G+G ++L + A ++G I
Sbjct: 249 GEGSGVIVLEEYEHAKRRGAKI 270
>d2gria1 d.15.14.1 (A:1-112) Nsp3 {SARS coronavirus [TaxId: 227859]}
Length = 112
Score = 25.2 bits (55), Expect = 6.8
Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 70 KDTLADDLLAPVLKAVIEKTRLNP-SEVGDIV 100
T + V +AV++ L P S++ +
Sbjct: 47 SGTEVTEFACVVAEAVVKT--LQPVSDLLTNM 76
>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase
{Helicobacter pylori [TaxId: 210]}
Length = 259
Score = 26.2 bits (56), Expect = 7.2
Identities = 10/36 (27%), Positives = 14/36 (38%)
Query: 242 TKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKP 277
T I+ PK + K V I I + + KL
Sbjct: 6 TAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHN 41
>d2vbaa1 c.95.1.1 (A:1-253) Beta-ketoacyl-ACP synthase I
{Escherichia coli [TaxId: 562]}
Length = 253
Score = 25.7 bits (55), Expect = 9.0
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 294 SDGAGAVLLMKRSLAVQKGLPI 315
+ G G V++ + A+ +G I
Sbjct: 232 AGGGGMVVVEELEHALARGAHI 253
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.132 0.366
Gapped
Lambda K H
0.267 0.0670 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,294,087
Number of extensions: 58760
Number of successful extensions: 191
Number of sequences better than 10.0: 1
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 24
Length of query: 374
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 287
Effective length of database: 1,213,086
Effective search space: 348155682
Effective search space used: 348155682
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.7 bits)