Query 017305
Match_columns 374
No_of_seqs 292 out of 1650
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 07:23:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017305.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017305hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02341 pfkB-type carbohydrat 100.0 2.5E-45 5.4E-50 361.3 32.8 298 75-372 66-363 (470)
2 PRK11142 ribokinase; Provision 100.0 2.6E-37 5.6E-42 290.1 25.6 252 82-372 3-259 (306)
3 cd01168 adenosine_kinase Adeno 100.0 4.7E-37 1E-41 289.2 22.2 266 82-372 2-279 (312)
4 PLN02813 pfkB-type carbohydrat 100.0 7.4E-36 1.6E-40 290.1 29.8 270 78-372 66-360 (426)
5 cd01174 ribokinase Ribokinase 100.0 3E-36 6.4E-41 281.0 25.8 251 83-372 1-256 (292)
6 PTZ00292 ribokinase; Provision 100.0 3.1E-36 6.6E-41 285.4 25.9 259 80-372 14-280 (326)
7 PLN02967 kinase 100.0 2.8E-36 6E-41 297.4 24.8 273 83-372 198-494 (581)
8 PTZ00247 adenosine kinase; Pro 100.0 3.7E-36 7.9E-41 286.9 24.0 274 79-372 3-304 (345)
9 PLN02323 probable fructokinase 100.0 3.9E-36 8.4E-41 285.2 23.8 263 80-372 9-274 (330)
10 PRK15074 inosine/guanosine kin 100.0 1.6E-35 3.6E-40 286.0 27.8 290 60-372 13-364 (434)
11 cd01167 bac_FRK Fructokinases 100.0 1.7E-35 3.6E-40 276.3 25.0 255 83-372 1-257 (295)
12 PRK09434 aminoimidazole ribosi 100.0 1.7E-35 3.6E-40 277.7 25.0 253 82-372 3-257 (304)
13 cd01944 YegV_kinase_like YegV- 100.0 2.1E-35 4.6E-40 275.0 25.2 255 83-372 1-260 (289)
14 KOG2855 Ribokinase [Carbohydra 100.0 1.3E-35 2.8E-40 269.3 18.8 265 79-372 7-275 (330)
15 cd01166 KdgK 2-keto-3-deoxyglu 100.0 1.5E-34 3.3E-39 269.7 25.2 257 83-372 1-263 (294)
16 PLN02543 pfkB-type carbohydrat 100.0 5E-35 1.1E-39 286.1 22.7 271 82-372 126-436 (496)
17 COG0524 RbsK Sugar kinases, ri 100.0 2.6E-34 5.6E-39 270.5 23.6 256 83-372 1-263 (311)
18 cd01942 ribokinase_group_A Rib 100.0 1.4E-34 3.1E-39 267.9 21.4 244 83-372 1-248 (279)
19 PRK09850 pseudouridine kinase; 100.0 3.3E-34 7.1E-39 270.0 22.9 252 81-372 4-262 (313)
20 TIGR02198 rfaE_dom_I rfaE bifu 100.0 3.6E-34 7.7E-39 270.0 23.2 258 77-372 3-272 (315)
21 cd01172 RfaE_like RfaE encodes 100.0 4.4E-34 9.6E-39 267.9 22.8 255 83-372 1-264 (304)
22 TIGR02152 D_ribokin_bact ribok 100.0 1.1E-33 2.5E-38 263.8 25.4 247 88-372 1-252 (293)
23 cd01945 ribokinase_group_B Rib 100.0 4.4E-34 9.5E-39 265.4 21.7 247 83-372 1-248 (284)
24 PLN02379 pfkB-type carbohydrat 100.0 2.8E-33 6.1E-38 267.9 26.9 270 77-372 15-311 (367)
25 PRK09954 putative kinase; Prov 100.0 6.6E-34 1.4E-38 273.0 22.3 249 83-372 59-315 (362)
26 TIGR03828 pfkB 1-phosphofructo 100.0 1.2E-33 2.7E-38 264.9 21.5 249 86-372 4-257 (304)
27 cd01939 Ketohexokinase Ketohex 100.0 3E-33 6.4E-38 260.7 22.9 249 83-372 1-258 (290)
28 cd01947 Guanosine_kinase_like 100.0 2.6E-33 5.6E-38 257.7 21.9 234 83-372 1-234 (265)
29 cd01164 FruK_PfkB_like 1-phosp 100.0 1.2E-32 2.6E-37 256.5 22.3 250 84-372 3-258 (289)
30 cd01940 Fructoselysine_kinase_ 100.0 1.5E-32 3.3E-37 252.4 22.6 231 83-372 1-232 (264)
31 cd01941 YeiC_kinase_like YeiC- 100.0 9.7E-33 2.1E-37 256.8 20.9 251 83-372 1-261 (288)
32 PF00294 PfkB: pfkB family car 100.0 3.5E-33 7.7E-38 261.2 17.4 255 81-372 1-264 (301)
33 PRK13508 tagatose-6-phosphate 100.0 2E-32 4.4E-37 257.3 22.3 251 84-372 3-259 (309)
34 TIGR01231 lacC tagatose-6-phos 100.0 3.7E-32 8E-37 255.6 22.1 252 84-372 2-259 (309)
35 PRK09513 fruK 1-phosphofructok 100.0 6.8E-32 1.5E-36 254.1 21.4 254 81-372 3-261 (312)
36 TIGR03168 1-PFK hexose kinase, 100.0 9.6E-32 2.1E-36 252.1 21.9 249 86-372 4-257 (303)
37 PRK10294 6-phosphofructokinase 100.0 5.4E-31 1.2E-35 247.6 22.7 253 83-372 4-262 (309)
38 PRK09813 fructoselysine 6-kina 100.0 5.9E-31 1.3E-35 241.4 21.3 228 82-372 1-229 (260)
39 PLN02548 adenosine kinase 100.0 1.6E-30 3.6E-35 246.8 21.2 233 122-372 46-293 (332)
40 cd01943 MAK32 MAK32 kinase. M 100.0 7.4E-31 1.6E-35 248.1 18.1 245 83-372 1-274 (328)
41 PRK11316 bifunctional heptose 100.0 3.9E-30 8.5E-35 255.4 22.0 256 76-372 5-270 (473)
42 cd01946 ribokinase_group_C Rib 100.0 2E-29 4.3E-34 233.4 20.5 236 84-372 2-240 (277)
43 COG1105 FruK Fructose-1-phosph 100.0 5.7E-29 1.2E-33 226.2 21.7 250 84-372 3-259 (310)
44 cd01937 ribokinase_group_D Rib 100.0 9.1E-29 2E-33 226.0 20.0 228 83-372 1-228 (254)
45 KOG2854 Possible pfkB family c 100.0 4.6E-27 1E-31 210.9 18.9 269 83-372 8-304 (343)
46 PLN02630 pfkB-type carbohydrat 99.9 4.4E-26 9.5E-31 214.9 21.0 228 80-372 10-247 (335)
47 cd00287 ribokinase_pfkB_like r 99.9 3.4E-26 7.4E-31 200.5 17.6 185 83-372 1-191 (196)
48 COG2870 RfaE ADP-heptose synth 99.9 1.9E-25 4.1E-30 204.7 20.5 253 76-370 5-267 (467)
49 KOG2947 Carbohydrate kinase [C 99.9 3.5E-22 7.5E-27 171.3 20.7 248 82-372 5-267 (308)
50 cd01173 pyridoxal_pyridoxamine 99.6 3.7E-14 8E-19 129.6 12.0 138 232-372 71-224 (254)
51 PRK05756 pyridoxamine kinase; 99.5 1.5E-13 3.1E-18 127.8 12.2 138 231-372 72-228 (286)
52 TIGR00687 pyridox_kin pyridoxa 99.5 4.2E-13 9.2E-18 124.7 11.4 138 231-372 72-229 (286)
53 KOG3009 Predicted carbohydrate 99.4 4.8E-12 1E-16 118.3 17.2 211 82-372 341-573 (614)
54 PRK12413 phosphomethylpyrimidi 99.4 9.1E-13 2E-17 120.3 12.3 121 249-372 82-215 (253)
55 PRK12412 pyridoxal kinase; Rev 99.4 1.6E-12 3.4E-17 119.6 12.9 139 228-372 65-219 (268)
56 PRK07105 pyridoxamine kinase; 99.4 1.3E-12 2.9E-17 121.2 12.1 136 233-372 75-228 (284)
57 cd01169 HMPP_kinase 4-amino-5- 99.4 3.6E-12 7.8E-17 115.5 14.5 134 233-372 68-214 (242)
58 TIGR00097 HMP-P_kinase phospho 99.4 4.5E-12 9.7E-17 115.8 13.4 132 233-372 67-213 (254)
59 PRK08176 pdxK pyridoxal-pyrido 99.3 8.7E-12 1.9E-16 115.5 11.6 137 231-372 86-239 (281)
60 PRK06427 bifunctional hydroxy- 99.3 2E-11 4.4E-16 112.3 13.7 132 233-372 73-221 (266)
61 PRK08573 phosphomethylpyrimidi 99.3 2.2E-11 4.9E-16 119.8 11.9 121 248-372 82-217 (448)
62 PRK12616 pyridoxal kinase; Rev 99.2 1.1E-10 2.3E-15 107.6 13.4 134 233-372 74-222 (270)
63 PTZ00344 pyridoxal kinase; Pro 99.2 2.2E-10 4.7E-15 107.0 12.4 130 236-372 79-232 (296)
64 PTZ00347 phosphomethylpyrimidi 99.1 8.6E-10 1.9E-14 110.4 12.3 139 227-372 291-451 (504)
65 PLN02898 HMP-P kinase/thiamin- 99.0 9.7E-09 2.1E-13 102.8 13.7 134 233-372 78-226 (502)
66 cd01170 THZ_kinase 4-methyl-5- 98.9 3.4E-08 7.3E-13 89.3 12.7 138 224-370 40-193 (242)
67 PRK14713 multifunctional hydro 98.8 3.4E-08 7.3E-13 99.5 13.3 131 234-372 99-245 (530)
68 cd01171 YXKO-related B.subtili 98.8 2.4E-08 5.2E-13 91.2 10.9 126 229-369 73-205 (254)
69 PRK09517 multifunctional thiam 98.8 3.4E-08 7.3E-13 103.3 12.8 131 234-372 311-457 (755)
70 PLN02978 pyridoxal kinase 98.8 4.5E-08 9.8E-13 91.8 11.9 132 234-370 87-237 (308)
71 PF08543 Phos_pyr_kin: Phospho 98.7 2.9E-07 6.4E-12 83.6 11.9 131 233-369 60-204 (246)
72 TIGR00196 yjeF_cterm yjeF C-te 98.6 4.3E-07 9.4E-12 83.8 11.1 126 227-368 86-216 (272)
73 COG0351 ThiD Hydroxymethylpyri 98.5 3E-06 6.5E-11 76.1 13.1 130 234-369 73-215 (263)
74 COG2240 PdxK Pyridoxal/pyridox 98.5 1.2E-06 2.7E-11 79.0 10.5 123 219-345 57-195 (281)
75 PRK09355 hydroxyethylthiazole 98.3 1.4E-05 2.9E-10 73.3 12.7 133 225-369 46-196 (263)
76 TIGR00694 thiM hydroxyethylthi 98.0 6.6E-05 1.4E-09 68.2 11.9 120 224-352 40-174 (249)
77 PTZ00493 phosphomethylpyrimidi 97.7 0.00085 1.8E-08 62.8 12.8 97 234-337 74-190 (321)
78 KOG2599 Pyridoxal/pyridoxine/p 97.4 0.00055 1.2E-08 61.0 7.7 103 231-337 79-190 (308)
79 PF02110 HK: Hydroxyethylthiaz 97.3 0.0032 7E-08 56.5 11.4 120 225-353 41-175 (246)
80 COG2145 ThiM Hydroxyethylthiaz 97.0 0.013 2.9E-07 52.3 12.1 118 225-351 47-179 (265)
81 PRK14039 ADP-dependent glucoki 97.0 0.019 4.1E-07 56.0 14.0 79 228-311 205-295 (453)
82 KOG2598 Phosphomethylpyrimidin 96.6 0.021 4.6E-07 54.4 10.8 125 233-363 92-247 (523)
83 TIGR02045 P_fruct_ADP ADP-spec 96.4 0.074 1.6E-06 51.9 13.2 77 228-309 204-291 (446)
84 PRK03979 ADP-specific phosphof 95.7 0.097 2.1E-06 51.3 10.6 74 231-309 220-305 (463)
85 PRK10565 putative carbohydrate 95.6 0.19 4.1E-06 50.6 12.4 121 228-367 315-443 (508)
86 PRK14038 ADP-dependent glucoki 95.4 0.29 6.2E-06 47.9 12.4 78 226-309 217-299 (453)
87 cd01938 ADPGK_ADPPFK ADP-depen 95.1 0.3 6.4E-06 48.0 11.7 161 123-309 101-285 (445)
88 PF04587 ADP_PFK_GK: ADP-speci 94.4 0.062 1.3E-06 53.0 5.1 77 227-309 203-291 (444)
89 PRK10076 pyruvate formate lyas 90.5 4.5 9.7E-05 35.8 11.1 84 233-326 38-128 (213)
90 KOG3974 Predicted sugar kinase 89.3 2.8 6E-05 37.8 8.6 115 228-352 96-217 (306)
91 COG1618 Predicted nucleotide k 89.3 4.2 9.2E-05 34.2 9.2 112 155-271 20-138 (179)
92 PF01256 Carb_kinase: Carbohyd 86.0 7.9 0.00017 34.9 9.9 107 228-352 62-176 (242)
93 TIGR02826 RNR_activ_nrdG3 anae 84.2 7.4 0.00016 32.2 8.2 58 235-305 63-120 (147)
94 COG1180 PflA Pyruvate-formate 82.5 18 0.00039 33.0 10.8 84 233-326 83-173 (260)
95 PF10087 DUF2325: Uncharacteri 82.1 20 0.00042 27.1 9.4 42 227-271 42-83 (97)
96 PLN03209 translocon at the inn 79.3 80 0.0017 32.4 15.0 23 128-150 90-112 (576)
97 PF00070 Pyr_redox: Pyridine n 72.5 8.8 0.00019 27.7 4.7 45 128-172 6-58 (80)
98 TIGR02494 PFLE_PFLC glycyl-rad 72.3 51 0.0011 30.4 11.0 82 235-326 127-215 (295)
99 COG0063 Predicted sugar kinase 72.2 23 0.00051 32.7 8.4 105 231-350 99-211 (284)
100 PRK08114 cystathionine beta-ly 71.2 39 0.00086 32.9 10.2 41 233-273 147-189 (395)
101 COG1058 CinA Predicted nucleot 70.6 13 0.00029 33.7 6.3 35 130-166 22-56 (255)
102 COG0626 MetC Cystathionine bet 70.3 54 0.0012 31.9 10.7 41 233-273 149-189 (396)
103 PF13986 DUF4224: Domain of un 68.2 11 0.00023 24.6 3.8 28 299-326 2-29 (47)
104 PRK09330 cell division protein 67.2 1.3E+02 0.0027 29.3 13.0 140 127-300 21-165 (384)
105 TIGR00334 5S_RNA_mat_M5 ribonu 66.4 55 0.0012 27.8 8.7 81 233-323 22-107 (174)
106 COG0206 FtsZ Cell division GTP 66.3 85 0.0018 29.9 10.9 151 127-308 19-173 (338)
107 KOG4184 Predicted sugar kinase 62.7 61 0.0013 30.8 8.9 160 124-309 139-316 (478)
108 PRK05967 cystathionine beta-ly 62.6 1.3E+02 0.0028 29.3 11.9 40 233-272 149-188 (395)
109 PRK09028 cystathionine beta-ly 61.3 1.2E+02 0.0025 29.6 11.3 41 233-273 146-186 (394)
110 PRK13397 3-deoxy-7-phosphohept 61.0 36 0.00078 30.8 7.1 79 247-339 63-162 (250)
111 KOG0053 Cystathionine beta-lya 60.9 1E+02 0.0022 30.1 10.4 48 226-273 154-202 (409)
112 PRK13018 cell division protein 60.0 1.7E+02 0.0037 28.3 12.1 141 127-302 36-182 (378)
113 TIGR01324 cysta_beta_ly_B cyst 59.5 1.4E+02 0.0031 28.7 11.6 41 233-273 135-175 (377)
114 TIGR02495 NrdG2 anaerobic ribo 58.7 1.1E+02 0.0025 25.9 11.9 81 234-326 63-154 (191)
115 PF01053 Cys_Met_Meta_PP: Cys/ 58.0 96 0.0021 30.1 10.0 41 233-273 140-181 (386)
116 PRK11145 pflA pyruvate formate 56.5 1.2E+02 0.0027 27.0 10.0 84 235-326 72-162 (246)
117 TIGR00065 ftsZ cell division p 55.9 1.9E+02 0.0042 27.6 13.4 28 127-154 25-52 (349)
118 COG2873 MET17 O-acetylhomoseri 55.0 1.1E+02 0.0024 29.4 9.4 60 233-302 147-206 (426)
119 cd02201 FtsZ_type1 FtsZ is a G 53.5 1.9E+02 0.0042 26.9 12.5 27 127-154 8-35 (304)
120 PF11965 DUF3479: Domain of un 53.1 48 0.001 27.9 6.1 54 278-336 41-94 (164)
121 TIGR01768 GGGP-family geranylg 53.0 41 0.00089 29.9 6.0 40 232-273 26-65 (223)
122 PLN02546 glutathione reductase 51.7 43 0.00093 34.3 6.8 20 131-150 91-110 (558)
123 COG1646 Predicted phosphate-bi 51.1 44 0.00096 29.8 5.8 40 232-273 40-80 (240)
124 COG0826 Collagenase and relate 49.3 1.7E+02 0.0036 28.0 9.9 77 232-310 25-108 (347)
125 PRK15452 putative protease; Pr 49.0 1.2E+02 0.0026 30.0 9.2 43 231-273 21-69 (443)
126 PRK06702 O-acetylhomoserine am 48.9 2.1E+02 0.0044 28.3 10.8 40 233-272 147-186 (432)
127 PRK05613 O-acetylhomoserine am 48.1 2.2E+02 0.0048 28.1 11.0 40 234-273 156-195 (437)
128 PRK07050 cystathionine beta-ly 46.5 2.8E+02 0.0061 26.8 11.9 40 233-272 150-189 (394)
129 PRK04169 geranylgeranylglycery 46.3 52 0.0011 29.5 5.6 40 232-273 31-70 (232)
130 TIGR02493 PFLA pyruvate format 45.9 2.1E+02 0.0046 25.2 11.0 84 235-326 67-157 (235)
131 COG0373 HemA Glutamyl-tRNA red 44.8 3.2E+02 0.0068 26.9 11.2 133 133-309 163-301 (414)
132 PRK08134 O-acetylhomoserine am 43.6 2.6E+02 0.0056 27.6 10.7 41 233-273 149-189 (433)
133 TIGR00177 molyb_syn molybdenum 43.2 61 0.0013 26.5 5.3 35 130-166 28-62 (144)
134 cd00885 cinA Competence-damage 42.7 65 0.0014 27.2 5.5 19 154-172 18-36 (170)
135 COG2117 Predicted subunit of t 42.7 73 0.0016 26.8 5.4 51 126-176 7-59 (198)
136 TIGR01769 GGGP geranylgeranylg 42.5 74 0.0016 27.9 5.9 39 233-273 24-63 (205)
137 TIGR03278 methan_mark_10 putat 40.8 3.6E+02 0.0078 26.4 11.0 74 233-314 73-153 (404)
138 PRK03673 hypothetical protein; 40.4 71 0.0015 31.1 6.0 37 129-167 21-57 (396)
139 COG4809 Archaeal ADP-dependent 40.1 1.3E+02 0.0027 29.2 7.3 80 227-311 219-309 (466)
140 cd00562 NifX_NifB This CD repr 39.4 58 0.0013 24.3 4.4 39 128-171 47-85 (102)
141 PRK07582 cystathionine gamma-l 39.1 3.4E+02 0.0075 25.9 10.6 49 127-175 72-121 (366)
142 PF00994 MoCF_biosynth: Probab 38.9 59 0.0013 26.4 4.6 18 154-171 16-33 (144)
143 PRK08133 O-succinylhomoserine 38.8 2.2E+02 0.0049 27.5 9.4 49 126-174 82-131 (390)
144 PRK12595 bifunctional 3-deoxy- 38.0 1E+02 0.0022 29.6 6.7 49 245-305 164-212 (360)
145 PLN00093 geranylgeranyl diphos 37.5 94 0.002 30.8 6.6 20 131-150 51-70 (450)
146 cd02191 FtsZ FtsZ is a GTPase 37.4 3.5E+02 0.0075 25.3 13.1 27 127-154 8-35 (303)
147 PRK12457 2-dehydro-3-deoxyphos 37.3 2.8E+02 0.0061 25.6 8.9 41 250-302 74-114 (281)
148 cd00758 MoCF_BD MoCF_BD: molyb 36.3 89 0.0019 25.0 5.2 17 154-170 18-34 (133)
149 PF05762 VWA_CoxE: VWA domain 35.2 1.4E+02 0.003 26.4 6.7 67 231-300 148-215 (222)
150 TIGR00200 cinA_nterm competenc 35.1 1.1E+02 0.0023 30.1 6.4 36 130-167 21-56 (413)
151 TIGR01361 DAHP_synth_Bsub phos 35.0 1.2E+02 0.0027 27.6 6.4 46 248-305 74-119 (260)
152 PRK01215 competence damage-ind 34.4 1.3E+02 0.0027 27.6 6.4 35 130-166 24-58 (264)
153 PRK13396 3-deoxy-7-phosphohept 34.2 1.4E+02 0.003 28.6 6.8 79 246-337 148-246 (352)
154 PF13460 NAD_binding_10: NADH( 33.6 2.7E+02 0.0058 23.0 8.1 93 150-270 3-96 (183)
155 cd00614 CGS_like CGS_like: Cys 33.5 2.6E+02 0.0056 26.7 8.8 21 252-272 144-164 (369)
156 PRK06701 short chain dehydroge 33.0 2.2E+02 0.0048 26.0 8.0 46 128-174 56-101 (290)
157 TIGR03128 RuMP_HxlA 3-hexulose 32.4 2.3E+02 0.005 24.3 7.6 57 232-301 75-133 (206)
158 COG0036 Rpe Pentose-5-phosphat 32.2 1.1E+02 0.0024 27.1 5.3 53 232-300 83-137 (220)
159 TIGR01362 KDO8P_synth 3-deoxy- 31.6 2.3E+02 0.005 25.8 7.3 42 249-302 59-100 (258)
160 PF02579 Nitro_FeMo-Co: Dinitr 31.5 35 0.00076 25.1 2.0 39 128-171 39-77 (94)
161 PRK05198 2-dehydro-3-deoxyphos 31.3 2.2E+02 0.0048 26.0 7.2 76 249-340 67-162 (264)
162 PF13380 CoA_binding_2: CoA bi 31.2 2.1E+02 0.0045 22.3 6.4 21 153-173 12-32 (116)
163 TIGR01093 aroD 3-dehydroquinat 30.8 3.8E+02 0.0081 23.7 12.1 97 233-342 92-194 (228)
164 PRK13762 tRNA-modifying enzyme 30.7 2.2E+02 0.0047 26.9 7.5 82 234-326 130-222 (322)
165 PF00265 TK: Thymidine kinase; 30.3 3.4E+02 0.0074 23.0 8.1 55 234-299 77-134 (176)
166 PF01884 PcrB: PcrB family; I 30.2 1.2E+02 0.0026 27.1 5.3 39 232-273 31-69 (230)
167 PRK05968 hypothetical protein; 30.1 1.3E+02 0.0028 29.1 6.1 43 230-272 144-186 (389)
168 smart00852 MoCF_biosynth Proba 29.9 1.2E+02 0.0027 24.1 5.1 18 154-171 17-34 (135)
169 cd00886 MogA_MoaB MogA_MoaB fa 29.8 1.1E+02 0.0025 25.1 4.9 33 131-165 22-54 (152)
170 PRK03670 competence damage-ind 29.7 93 0.002 28.3 4.7 35 130-166 21-55 (252)
171 PRK05866 short chain dehydroge 29.1 1.9E+02 0.004 26.6 6.8 43 128-172 50-92 (293)
172 PRK00549 competence damage-ind 28.9 1E+02 0.0022 30.3 5.1 35 130-166 21-55 (414)
173 TIGR03569 NeuB_NnaB N-acetylne 28.8 1.9E+02 0.0042 27.4 6.8 48 246-305 72-120 (329)
174 PRK13237 tyrosine phenol-lyase 28.6 2.2E+02 0.0047 28.4 7.3 56 246-301 194-257 (460)
175 PRK08249 cystathionine gamma-s 28.5 3.3E+02 0.0072 26.4 8.7 21 252-272 168-188 (398)
176 PRK06115 dihydrolipoamide dehy 28.0 79 0.0017 31.4 4.3 31 79-148 1-32 (466)
177 PRK08641 sdhA succinate dehydr 28.0 71 0.0015 32.9 4.1 22 128-149 12-33 (589)
178 PRK07251 pyridine nucleotide-d 27.8 79 0.0017 31.0 4.2 31 79-148 1-32 (438)
179 PF10678 DUF2492: Protein of u 27.4 1.3E+02 0.0029 21.9 4.2 37 133-169 25-61 (78)
180 cd00851 MTH1175 This uncharact 27.4 1E+02 0.0022 23.0 4.0 39 129-172 50-88 (103)
181 TIGR01325 O_suc_HS_sulf O-succ 27.4 4.4E+02 0.0095 25.3 9.3 21 252-272 158-178 (380)
182 PF05368 NmrA: NmrA-like famil 26.9 4.2E+02 0.0091 23.0 8.5 44 225-268 56-99 (233)
183 PRK07810 O-succinylhomoserine 26.9 5.9E+02 0.013 24.7 11.3 22 252-273 174-195 (403)
184 TIGR02491 NrdG anaerobic ribon 26.8 1.8E+02 0.004 23.9 5.7 45 249-299 80-127 (154)
185 PRK15447 putative protease; Pr 26.6 5.2E+02 0.011 24.0 12.2 73 232-309 27-104 (301)
186 PRK08673 3-deoxy-7-phosphohept 26.3 2.2E+02 0.0048 27.1 6.7 48 246-305 140-187 (335)
187 PF03266 NTPase_1: NTPase; In 26.1 3.3E+02 0.007 22.9 7.1 107 158-273 17-135 (168)
188 PRK08010 pyridine nucleotide-d 26.0 93 0.002 30.5 4.4 31 79-148 1-32 (441)
189 PRK06370 mercuric reductase; V 25.7 92 0.002 30.9 4.3 32 78-148 2-34 (463)
190 PLN03033 2-dehydro-3-deoxyphos 25.6 4.2E+02 0.0092 24.5 8.0 77 249-341 73-169 (290)
191 COG1922 WecG Teichoic acid bio 25.2 3.9E+02 0.0085 24.3 7.7 102 225-337 56-171 (253)
192 COG1433 Uncharacterized conser 25.2 1.2E+02 0.0026 24.2 3.9 40 128-172 51-90 (121)
193 COG0136 Asd Aspartate-semialde 25.1 5.3E+02 0.012 24.5 8.8 97 143-273 2-99 (334)
194 PF02571 CbiJ: Precorrin-6x re 24.9 1E+02 0.0022 28.0 4.0 85 248-343 54-145 (249)
195 PRK00278 trpC indole-3-glycero 24.8 2.8E+02 0.0062 25.1 7.0 63 230-306 130-192 (260)
196 TIGR02990 ectoine_eutA ectoine 24.7 5.1E+02 0.011 23.2 9.2 42 132-174 109-151 (239)
197 PRK07818 dihydrolipoamide dehy 24.7 1.3E+02 0.0029 29.8 5.2 46 127-172 178-231 (466)
198 KOG3191 Predicted N6-DNA-methy 24.5 4.5E+02 0.0097 22.8 7.4 21 245-265 74-94 (209)
199 cd04726 KGPDC_HPS 3-Keto-L-gul 24.4 4.4E+02 0.0095 22.4 9.0 57 232-301 76-133 (202)
200 PRK09754 phenylpropionate diox 24.3 1.3E+02 0.0029 29.0 5.0 46 127-172 150-204 (396)
201 TIGR01290 nifB nitrogenase cof 24.0 2.9E+02 0.0062 27.4 7.3 63 232-303 77-142 (442)
202 PRK13512 coenzyme A disulfide 23.9 1.3E+02 0.0029 29.5 5.0 46 127-172 154-207 (438)
203 PTZ00300 pyruvate kinase; Prov 23.8 3.6E+02 0.0078 26.9 7.8 80 227-306 204-291 (454)
204 PRK06247 pyruvate kinase; Prov 23.7 4.8E+02 0.01 26.2 8.7 77 229-305 229-313 (476)
205 TIGR03853 matur_matur probable 23.5 1.7E+02 0.0038 21.2 4.1 38 132-169 22-59 (77)
206 COG0521 MoaB Molybdopterin bio 23.3 3E+02 0.0066 23.3 6.2 18 154-171 26-43 (169)
207 PRK07269 cystathionine gamma-s 22.9 2.3E+02 0.005 27.1 6.3 41 232-272 135-175 (364)
208 PF03102 NeuB: NeuB family; I 22.7 3.6E+02 0.0079 24.3 7.1 71 246-337 52-122 (241)
209 PTZ00058 glutathione reductase 22.6 1.1E+02 0.0023 31.4 4.1 51 60-148 27-77 (561)
210 KOG0117 Heterogeneous nuclear 22.6 2.6E+02 0.0055 27.6 6.2 103 146-258 167-278 (506)
211 PRK13398 3-deoxy-7-phosphohept 22.6 2.8E+02 0.0062 25.3 6.5 77 248-337 76-172 (266)
212 PRK06467 dihydrolipoamide dehy 22.6 1.2E+02 0.0026 30.1 4.5 20 131-150 16-35 (471)
213 PRK06739 pyruvate kinase; Vali 22.5 6.9E+02 0.015 23.9 9.3 80 227-306 223-310 (352)
214 PLN02927 antheraxanthin epoxid 22.5 2.1E+02 0.0046 30.0 6.3 20 131-150 93-112 (668)
215 PRK07818 dihydrolipoamide dehy 22.5 1.2E+02 0.0026 30.0 4.4 19 131-149 16-34 (466)
216 PRK07523 gluconate 5-dehydroge 22.4 2.9E+02 0.0062 24.4 6.6 43 128-172 20-62 (255)
217 cd02752 MopB_Formate-Dh-Na-lik 22.3 4.3E+02 0.0092 27.7 8.5 89 231-324 167-267 (649)
218 PF02593 dTMP_synthase: Thymid 22.3 2.9E+02 0.0063 24.5 6.2 39 231-274 49-87 (217)
219 cd00757 ThiF_MoeB_HesA_family 22.3 5.4E+02 0.012 22.6 10.4 37 227-268 105-141 (228)
220 PRK14727 putative mercuric red 22.3 1.5E+02 0.0032 29.6 5.0 45 127-172 194-246 (479)
221 PF04016 DUF364: Domain of unk 22.1 1.2E+02 0.0026 24.9 3.6 44 227-273 56-99 (147)
222 PF01172 SBDS: Shwachman-Bodia 22.1 1.1E+02 0.0023 23.0 3.0 26 300-325 54-79 (91)
223 PRK06728 aspartate-semialdehyd 22.1 4.2E+02 0.0091 25.3 7.7 37 231-274 66-102 (347)
224 TIGR03586 PseI pseudaminic aci 22.0 3E+02 0.0066 26.0 6.7 25 247-271 74-98 (327)
225 TIGR01438 TGR thioredoxin and 21.9 1.7E+02 0.0037 29.3 5.4 47 126-172 185-238 (484)
226 PRK07109 short chain dehydroge 21.9 2.8E+02 0.0061 26.0 6.6 46 128-175 18-63 (334)
227 PF00308 Bac_DnaA: Bacterial d 21.8 5.5E+02 0.012 22.5 9.3 97 225-324 89-197 (219)
228 TIGR01421 gluta_reduc_1 glutat 21.5 1.7E+02 0.0037 28.9 5.3 46 127-172 172-225 (450)
229 cd00613 GDC-P Glycine cleavage 21.5 5.9E+02 0.013 24.2 9.0 38 233-270 159-196 (398)
230 PRK08849 2-octaprenyl-3-methyl 21.3 1.3E+02 0.0028 28.8 4.3 24 128-151 10-35 (384)
231 PRK09722 allulose-6-phosphate 21.2 3.1E+02 0.0067 24.5 6.3 55 233-300 82-136 (229)
232 PLN02509 cystathionine beta-ly 21.1 3.8E+02 0.0083 26.7 7.6 47 227-273 210-257 (464)
233 PRK09126 hypothetical protein; 21.1 1.3E+02 0.0027 28.9 4.2 42 128-169 10-65 (392)
234 PRK13601 putative L7Ae-like ri 21.0 2.7E+02 0.0059 20.4 4.9 34 232-269 23-56 (82)
235 PRK05732 2-octaprenyl-6-methox 21.0 1.2E+02 0.0025 29.1 3.9 20 131-150 15-37 (395)
236 TIGR02618 tyr_phenol_ly tyrosi 20.8 2.1E+02 0.0046 28.4 5.6 57 246-302 187-251 (450)
237 TIGR03609 S_layer_CsaB polysac 20.8 6.5E+02 0.014 22.9 10.7 77 226-305 57-138 (298)
238 PRK06598 aspartate-semialdehyd 20.8 3.7E+02 0.008 26.0 7.1 39 231-275 63-102 (369)
239 PLN02409 serine--glyoxylate am 20.7 7.1E+02 0.015 24.0 9.4 45 128-174 68-113 (401)
240 PRK13748 putative mercuric red 20.7 1.6E+02 0.0035 29.9 5.1 47 126-172 275-328 (561)
241 PF01212 Beta_elim_lyase: Beta 20.7 67 0.0014 29.8 2.0 67 232-302 123-193 (290)
242 COG4015 Predicted dinucleotide 20.6 4E+02 0.0087 22.5 6.2 84 225-337 99-182 (217)
243 PRK04148 hypothetical protein; 20.5 2.3E+02 0.005 23.0 4.9 37 230-271 74-110 (134)
244 PRK14694 putative mercuric red 20.5 1.7E+02 0.0037 29.0 5.1 45 127-172 184-236 (468)
245 PRK06194 hypothetical protein; 20.5 3.2E+02 0.0069 24.6 6.6 45 128-174 16-60 (287)
246 COG1973 HypE Hydrogenase matur 20.4 1.7E+02 0.0038 27.6 4.5 90 255-349 304-394 (449)
247 cd06453 SufS_like Cysteine des 20.4 6.7E+02 0.015 23.5 9.1 39 233-271 139-177 (373)
248 PRK10017 colanic acid biosynth 20.3 8.3E+02 0.018 24.0 10.0 79 226-308 110-190 (426)
249 PLN02762 pyruvate kinase compl 20.2 7.6E+02 0.017 25.0 9.4 81 226-306 261-349 (509)
250 cd05014 SIS_Kpsf KpsF-like pro 20.1 3.1E+02 0.0067 21.2 5.7 38 232-272 46-83 (128)
251 COG0269 SgbH 3-hexulose-6-phos 20.1 6.2E+02 0.013 22.4 10.1 91 231-336 78-172 (217)
No 1
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=2.5e-45 Score=361.28 Aligned_cols=298 Identities=72% Similarity=1.155 Sum_probs=236.1
Q ss_pred cccCCCCccEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCc
Q 017305 75 RSSGVKSIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNE 154 (374)
Q Consensus 75 ~~~~~~~~~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D 154 (374)
....+++++|+++|++++|+++.++++|.+++.........+...+.....+.+|+++|+|++|++||.++.++|.||+|
T Consensus 66 ~~~~~~~~~vl~lG~~~vD~i~~V~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~NvAvaLarLG~~v~lig~VG~D 145 (470)
T PLN02341 66 GSAAGKEIDVATLGNLCVDIVLPVPELPPPSREERKAYMEELAASPPDKKSWEAGGNCNFAIAAARLGLRCSTIGHVGDE 145 (470)
T ss_pred cccccccccEEEECCcceeEEEecCCCCCCCHHHHHHHHHhhcccccccceecCChHHHHHHHHHHcCCCeEEEEEecCc
Confidence 34566788999999999999999999999886532222222222221222333444799999999999999999999999
Q ss_pred hhHHHHHHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcccHHHHhhccCC
Q 017305 155 IYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHS 234 (374)
Q Consensus 155 ~~G~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 234 (374)
.+|+++++.|+++||+++++...++..+......+|+.++++++++|++.++.+.++...+...++..+.+...+.++++
T Consensus 146 ~~G~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~vlvd~~ger~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~a 225 (470)
T PLN02341 146 IYGKFLLDVLAEEGISVVGLIEGTDAGDSSSASYETLLCWVLVDPLQRHGFCSRADFGPEPAFSWISKLSAEAKMAIRQS 225 (470)
T ss_pred HHHHHHHHHHHHcCCeeeEEEecCccccccccCCCceeEEEEEcCCCCceeeeccccccccchhhhhcccHHHHhhhhcC
Confidence 99999999999999999998766532211122346999999999999988766554433333333333444455678999
Q ss_pred cEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCCCCH
Q 017305 235 KVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRNP 314 (374)
Q Consensus 235 ~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~~~~ 314 (374)
++||++|+.+.+.+.+.+.++++.+++.|++|++|++++...+|.+.+..++.+.++++++|++++|++|++.++|.++.
T Consensus 226 div~lsg~~~~~~~~~~~~~~~~~Ak~~g~~V~~Dp~~~~~~~~~~~~~~~~~l~~~L~~~Dil~~Ne~Ea~~l~g~~~~ 305 (470)
T PLN02341 226 KALFCNGYVFDELSPSAIASAVDYAIDVGTAVFFDPGPRGKSLLVGTPDERRALEHLLRMSDVLLLTSEEAEALTGIRNP 305 (470)
T ss_pred CEEEEeceeCCcCCHHHHHHHHHHHHHcCCEEEEeCCCcccccccChHHHHHHHHHHHhhCCEEEecHHHHHHHhCCCCH
Confidence 99999999776788899999999999999999999998754455554445566889999999999999999999998889
Q ss_pred HHHHHHHHHcCCCccEEEEEcCCCceEEEeCCceEEecCceeeeecccchhhhhcCCC
Q 017305 315 ITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 315 ~~~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
+++++.|++.+.+.+.||||+|++|++++++++.+++|++++++||||||||+|.+|+
T Consensus 306 ~~a~~~l~~~g~~~k~VVVTlG~~Ga~~~~~~~~~~vpa~~v~vVDTtGAGDaF~Agf 363 (470)
T PLN02341 306 ILAGQELLRPGIRTKWVVVKMGSKGSILVTRSSVSCAPAFKVNVVDTVGCGDSFAAAI 363 (470)
T ss_pred HHHHHHHHhcCCCCCEEEEeeCCCCeEEEECCeeEEeCCCCcCCCCCcCccHHHHHHH
Confidence 9999999887754478999999999999999889999999999999999999998875
No 2
>PRK11142 ribokinase; Provisional
Probab=100.00 E-value=2.6e-37 Score=290.14 Aligned_cols=252 Identities=25% Similarity=0.338 Sum_probs=203.1
Q ss_pred ccEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHHHH
Q 017305 82 IDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLL 161 (374)
Q Consensus 82 ~~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~ 161 (374)
.+|+|+|++++|+++.++++|.+++.... . .....+||++.|+|++|++||.++.++|.+|+|.+|++++
T Consensus 3 ~~i~~iG~~~~D~~~~~~~~p~~~~~~~~---~-------~~~~~~GG~~~Nva~~la~lG~~~~~~~~vG~D~~g~~i~ 72 (306)
T PRK11142 3 GKLVVLGSINADHVLNLESFPRPGETLTG---R-------HYQVAFGGKGANQAVAAARLGADIAFIACVGDDSIGESMR 72 (306)
T ss_pred CcEEEECCceeeEEEEeCCCCCCCCeeEe---c-------cceecCCCcHHHHHHHHHhcCCcEEEEEEECCChhHHHHH
Confidence 47999999999999999999888765321 1 2345679999999999999999999999999999999999
Q ss_pred HHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcccHHHHhhccCCcEEEEec
Q 017305 162 DVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNG 241 (374)
Q Consensus 162 ~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~~~g 241 (374)
+.|+++||+++++...++. +|+.++++++++|+|++....+........ .+ +...+.+.+++++|+++
T Consensus 73 ~~L~~~gV~~~~i~~~~~~--------~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~---~~-~~~~~~l~~~~~v~~~~ 140 (306)
T PRK11142 73 QQLAKDGIDTAPVSVIKGE--------STGVALIFVNDEGENSIGIHAGANAALTPA---LV-EAHRELIANADALLMQL 140 (306)
T ss_pred HHHHHcCCChhhEEEcCCC--------CCCEEEEEECCCCCEEEEEeCCccccCCHH---HH-HHHHhhhccCCEEEEeC
Confidence 9999999999999876665 388898889988998876543321111101 11 12235578999999974
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCCC-----CHHH
Q 017305 242 YGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLR-----NPIT 316 (374)
Q Consensus 242 ~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~~-----~~~~ 316 (374)
..+.+.+.++++.+++.|.++++|++.... + ...+++++|++++|++|++.++|.. +..+
T Consensus 141 ----~~~~~~~~~~~~~a~~~g~~v~~d~~~~~~-~----------~~~~~~~~dil~~n~~Ea~~l~g~~~~~~~~~~~ 205 (306)
T PRK11142 141 ----ETPLETVLAAAKIAKQHGTKVILNPAPARE-L----------PDELLALVDIITPNETEAEKLTGIRVEDDDDAAK 205 (306)
T ss_pred ----CCCHHHHHHHHHHHHHcCCEEEEECCCCcc-c----------CHHHHhhCCEEcCCHHHHHHHhCCCCCChHHHHH
Confidence 345677888999999999999999985431 1 1468899999999999999999853 3456
Q ss_pred HHHHHHHcCCCccEEEEEcCCCceEEEeCCceEEecCceeeeecccchhhhhcCCC
Q 017305 317 AGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 317 ~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
+++.+.+.|+ +.+|||+|++|++++.+++.+++|+++++++|||||||+|.+|+
T Consensus 206 ~~~~l~~~g~--~~vvvt~G~~G~~~~~~~~~~~~~~~~v~vvDt~GAGDaF~Agf 259 (306)
T PRK11142 206 AAQVLHQKGI--ETVLITLGSRGVWLSENGEGQRVPGFRVQAVDTIAAGDTFNGAL 259 (306)
T ss_pred HHHHHHHhCC--CeEEEEECCCcEEEEeCCcceeccCCCcccccCCCchhHHHHHH
Confidence 7788888776 78999999999999988888899999999999999999998875
No 3
>cd01168 adenosine_kinase Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor.The physiological function of AK is associated with the regulation of extracellular adenosine levels and the preservation of intracellular adenylate pools. Adenosine kinase is involved in the purine salvage pathway.
Probab=100.00 E-value=4.7e-37 Score=289.19 Aligned_cols=266 Identities=26% Similarity=0.313 Sum_probs=207.1
Q ss_pred ccEEEECCeeEEEeecCCCCC------CCchhhHHH---HhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEec
Q 017305 82 IDVATLGNLCVDIVLNVPQLP------PPSRDARKA---YMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVG 152 (374)
Q Consensus 82 ~~vlviG~~~~D~i~~~~~~p------~~~~~~~~~---~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG 152 (374)
.+|+|+|++++|+++.++++| .++++.... ..+.+.. .+....+||+++|+|+++++||.++.++|.+|
T Consensus 2 ~~v~~vG~~~~D~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~GG~~~N~A~~la~LG~~~~~i~~vG 79 (312)
T cd01168 2 YDVLGLGNALVDILAQVDDAFLEKLGLKKGDMILADMEEQEELLAK--LPVKYIAGGSAANTIRGAAALGGSAAFIGRVG 79 (312)
T ss_pred ceEEEECCCeEEEEEecCHHHHHHcCCCCCceeecCHHHHHHHHHh--cCccccCCCHHHHHHHHHHHhcCCeEEEEEec
Confidence 469999999999999999988 335432210 0000000 02345679999999999999999999999999
Q ss_pred CchhHHHHHHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcccHHHHhhcc
Q 017305 153 NEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIK 232 (374)
Q Consensus 153 ~D~~G~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 232 (374)
+|.+|+++++.|+++||+++++... +. +|+.++++++++|+|+++...+....... +.+ ..+.++
T Consensus 80 ~D~~g~~i~~~l~~~GV~~~~~~~~-~~--------~t~~~~~~~~~~g~r~~~~~~~~~~~~~~---~~~---~~~~l~ 144 (312)
T cd01168 80 DDKLGDFLLKDLRAAGVDTRYQVQP-DG--------PTGTCAVLVTPDAERTMCTYLGAANELSP---DDL---DWSLLA 144 (312)
T ss_pred cChhHHHHHHHHHHCCCccccccCC-CC--------CceEEEEEEcCCCceeeecccchhhcCCh---hHC---CHHHHc
Confidence 9999999999999999999988654 32 48899999998999987644322111111 111 134578
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCC-
Q 017305 233 HSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGL- 311 (374)
Q Consensus 233 ~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~- 311 (374)
+++++|++++.+ ..+.+.+..+++.+++.|.++++|++... + ....++.+.++++++|++++|++|++.++|.
T Consensus 145 ~~~~v~~~~~~~-~~~~~~~~~~~~~a~~~g~~v~~d~~~~~---~--~~~~~~~~~~~l~~~d~l~~n~~E~~~l~~~~ 218 (312)
T cd01168 145 KAKYLYLEGYLL-TVPPEAILLAAEHAKENGVKIALNLSAPF---I--VQRFKEALLELLPYVDILFGNEEEAEALAEAE 218 (312)
T ss_pred cCCEEEEEEEec-CCCHHHHHHHHHHHHHcCCEEEEeCCcHH---H--HHHHHHHHHHHHhhCCEEEeCHHHHHHHhCCC
Confidence 899999998753 23448888999999999999999997421 0 1223455778999999999999999999985
Q ss_pred -CCHHHHHHHHHHcCCCccEEEEEcCCCceEEEeCCceEEecCce-eeeecccchhhhhcCCC
Q 017305 312 -RNPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFK-VLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 312 -~~~~~~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~-v~vVDttGagdaf~~G~ 372 (374)
.+..++++.+++.++ +.+|||+|++|++++++++.+++|+++ +++||||||||+|.+|+
T Consensus 219 ~~~~~~~a~~l~~~g~--~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~vvDttGAGDaf~ag~ 279 (312)
T cd01168 219 TTDDLEAALKLLALRC--RIVVITQGAKGAVVVEGGEVYPVPAIPVEKIVDTNGAGDAFAGGF 279 (312)
T ss_pred CCChHHHHHHHHhcCC--CEEEEecCCCCeEEEECCEEEeCCCCCCCCcccCCchHHHHHHHH
Confidence 566788899999886 789999999999999988889999999 89999999999998875
No 4
>PLN02813 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=7.4e-36 Score=290.15 Aligned_cols=270 Identities=23% Similarity=0.230 Sum_probs=207.4
Q ss_pred CCCCccEEEECCeeEEEeecCCC-------CCCCchhhH-----HHHhhhhhcCCCCCccccCCcHHHHHHHHHHcC---
Q 017305 78 GVKSIDVATLGNLCVDIVLNVPQ-------LPPPSRDAR-----KAYMDQLSASPPDKQYWEAGGNCNVAIAAARLG--- 142 (374)
Q Consensus 78 ~~~~~~vlviG~~~~D~i~~~~~-------~p~~~~~~~-----~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG--- 142 (374)
..++++|+++|++++|++..+++ +|+.+.++. ....+.+.. ......+||+++|+|++++|||
T Consensus 66 ~~~~~~vl~iG~~~vDi~~~v~~~fl~~~~lp~~~~~~i~~~~~~~l~e~~~~--~~~~~~~GG~~~N~AvalarLG~~~ 143 (426)
T PLN02813 66 VPERWDVLGLGQAMVDFSGMVDDEFLERLGLEKGTRKVINHEERGKVLRALDG--CSYKASAGGSLSNTLVALARLGSQS 143 (426)
T ss_pred CCCcceEEEeCCceeEEEEecCHHHHHHcCCCcCcccccCHHHHHHHHHHhhc--cCceEecCcHHHHHHHHHHHhcccc
Confidence 34678999999999999999998 998873220 011122221 1345668999999999999999
Q ss_pred -----CCeEEEEEecCchhHHHHHHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchh
Q 017305 143 -----LDCVTIGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAF 217 (374)
Q Consensus 143 -----~~~~~v~~vG~D~~G~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~ 217 (374)
.++.++|.||+|.+|+++++.|+++||++.++.+... +|+.++++++++|+|+++.+.+......
T Consensus 144 ~~~~~~~v~~ig~VG~D~~G~~i~~~L~~~GVd~~~~~~~~~---------~Tg~~~ilv~~~gertii~~~Ga~~~l~- 213 (426)
T PLN02813 144 AAGPALNVAMAGSVGSDPLGDFYRTKLRRANVHFLSQPVKDG---------TTGTVIVLTTPDAQRTMLSYQGTSSTVN- 213 (426)
T ss_pred ccCCCCcEEEEEEeCCChHHHHHHHHHHHcCCcccceecCCC---------CceEEEEEEcCCCCceeeeccCchhhCC-
Confidence 7999999999999999999999999999988754332 4899999999999999876543221111
Q ss_pred hhhhcccHHHHhhccCCcEEEEecCCC-CCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHH-HHHhhhccC
Q 017305 218 SWMNKLSAEVKTAIKHSKVLFCNGYGF-DELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQR-ALSYFLSTS 295 (374)
Q Consensus 218 ~~~~~l~~~~~~~l~~~~~v~~~g~~~-~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~-~~~~ll~~~ 295 (374)
..+...+.+++++++|++|+.+ .+...+.+.++++.+++.|+++++|++.... . ...++ ....+++++
T Consensus 214 -----~~~~~~~~i~~adiv~l~g~~~~~~~~~~~~~~~~~~ak~~g~~v~~d~s~~~~-~----~~~~~~l~~~ll~~v 283 (426)
T PLN02813 214 -----YDSCLASAISKSRVLVVEGYLWELPQTIEAIAQACEEAHRAGALVAVTASDVSC-I----ERHRDDFWDVMGNYA 283 (426)
T ss_pred -----ccccCHHHHhcCCEEEEEeeecCCCchHHHHHHHHHHHHHcCCEEEEECCCcch-h----hhhHHHHHHHHHhcC
Confidence 1112235578999999998754 2223477888999999999999999875320 0 11122 234556899
Q ss_pred cEEecCHHHHHHhhCC---CCHHHHHHHHHHcCCCccEEEEEcCCCceEEEeCCceEEecCceeeeecccchhhhhcCCC
Q 017305 296 DVLLLTSDEAESLTGL---RNPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 296 Dil~~N~~Ea~~l~g~---~~~~~~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
|++++|++|+..|+|. ++.+++++.|. +++ +.||||+|++|++++.+++.+++|++++++||||||||+|.+|+
T Consensus 284 Dil~~Ne~Ea~~l~g~~~~~~~~~a~~~L~-~~~--~~VVVT~G~~Ga~~~~~~~~~~~pa~~v~vVDTtGAGDAF~Agf 360 (426)
T PLN02813 284 DILFANSDEARALCGLGSEESPESATRYLS-HFC--PLVSVTDGARGSYIGVKGEAVYIPPSPCVPVDTCGAGDAYAAGI 360 (426)
T ss_pred CEEEeCHHHHHHHhCCCCCCCHHHHHHHHH-cCC--CEEEEEeCCCCeEEEECCEEEEeCCCCCCcccCCChHHHHHHHH
Confidence 9999999999999985 45667776665 555 78999999999999998889999999999999999999998875
No 5
>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.
Probab=100.00 E-value=3e-36 Score=281.01 Aligned_cols=251 Identities=27% Similarity=0.383 Sum_probs=203.5
Q ss_pred cEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHHHHH
Q 017305 83 DVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLD 162 (374)
Q Consensus 83 ~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~~ 162 (374)
+|+|+|++++|++..++++|..++.... . .....+||++.|+|.+|++||.++.++|.+|+|.+|+++++
T Consensus 1 ~il~iG~~~~D~~~~~~~~~~~~~~~~~---~-------~~~~~~GG~~~NvA~~l~~lG~~~~~~~~vG~D~~g~~i~~ 70 (292)
T cd01174 1 KVVVVGSINVDLVTRVDRLPKPGETVLG---S-------SFETGPGGKGANQAVAAARLGARVAMIGAVGDDAFGDELLE 70 (292)
T ss_pred CEEEEeeceeEEEEEecCCCCCCCcEEe---c-------cceecCCCcHHHHHHHHHHcCCceEEEEEEcCCccHHHHHH
Confidence 5899999999999999988887654321 1 23456799999999999999999999999999999999999
Q ss_pred HHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcccHHHHhhccCCcEEEEecC
Q 017305 163 VLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGY 242 (374)
Q Consensus 163 ~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~~~g~ 242 (374)
.|+++||+++++.+.++. +|+.++++++++|+|++....+.......+. + +...+.+++++++++++
T Consensus 71 ~l~~~gi~~~~~~~~~~~--------~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~v~~~~- 137 (292)
T cd01174 71 NLREEGIDVSYVEVVVGA--------PTGTAVITVDESGENRIVVVPGANGELTPAD---V-DAALELIAAADVLLLQL- 137 (292)
T ss_pred HHHHcCCCceEEEEcCCC--------CceeEEEEEcCCCceEEEEeCCCCCCCCHHH---H-HHHHHhcccCCEEEEeC-
Confidence 999999999998766554 3889999998889988765432211111111 1 22345678999999984
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCCC-----CHHHH
Q 017305 243 GFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLR-----NPITA 317 (374)
Q Consensus 243 ~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~~-----~~~~~ 317 (374)
..+.+.+..+++.++++|.++++|++.... . ..++++++|++++|++|++.+++.. +..++
T Consensus 138 ---~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~-~----------~~~~~~~~dil~~n~~E~~~l~~~~~~~~~~~~~~ 203 (292)
T cd01174 138 ---EIPLETVLAALRAARRAGVTVILNPAPARP-L----------PAELLALVDILVPNETEAALLTGIEVTDEEDAEKA 203 (292)
T ss_pred ---CCCHHHHHHHHHHHHhcCCEEEEeCCCcCc-C----------cHHHHhhCCEEeeCHHHHHHHhCCCCCCHHHHHHH
Confidence 456778889999999999999999986532 1 2578899999999999999999864 23467
Q ss_pred HHHHHHcCCCccEEEEEcCCCceEEEeCCceEEecCceeeeecccchhhhhcCCC
Q 017305 318 GQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 318 ~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
++.+.+.|+ +.||+|+|++|++++++++.+++|+++++++||||+||+|.+|+
T Consensus 204 ~~~l~~~g~--~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~vdt~GaGD~F~ag~ 256 (292)
T cd01174 204 ARLLLAKGV--KNVIVTLGAKGALLASGGEVEHVPAFKVKAVDTTGAGDTFIGAL 256 (292)
T ss_pred HHHHHHcCC--CEEEEEeCCCceEEEeCCceEEecCCCcccCCCCCcHHHHHHHH
Confidence 788888877 78999999999999998888899999999999999999998875
No 6
>PTZ00292 ribokinase; Provisional
Probab=100.00 E-value=3.1e-36 Score=285.39 Aligned_cols=259 Identities=20% Similarity=0.305 Sum_probs=204.5
Q ss_pred CCccEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHH
Q 017305 80 KSIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRF 159 (374)
Q Consensus 80 ~~~~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~ 159 (374)
.+.+|+|+|.+++|+++.++++|.+++.... + .....+||++.|+|++|++||.++.++|.+|+|.+|++
T Consensus 14 ~~~~vlviG~~~vD~~~~~~~~~~~~~~~~~---~-------~~~~~~GG~~~NvA~~la~lG~~~~~is~vG~D~~g~~ 83 (326)
T PTZ00292 14 AEPDVVVVGSSNTDLIGYVDRMPQVGETLHG---T-------SFHKGFGGKGANQAVMASKLGAKVAMVGMVGTDGFGSD 83 (326)
T ss_pred CCCCEEEEccceeeEEEecCCCCCCCCceee---c-------CceeCCCCcHHHHHHHHHHcCCCeEEEEEECCChhHHH
Confidence 4568999999999999999999888765321 1 23456799999999999999999999999999999999
Q ss_pred HHHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEEC-CCCCccccccCCCCCCchhhhhhcccHHHHhhccC-CcEE
Q 017305 160 LLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVD-PSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKH-SKVL 237 (374)
Q Consensus 160 i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~-~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~-~~~v 237 (374)
+++.|++.||+++++.+.++. +|++++++++ .+|+|.++.+.+......... + +...+.+.+ ++++
T Consensus 84 i~~~l~~~GI~~~~~~~~~~~--------~t~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~---~-~~~~~~i~~~~~~~ 151 (326)
T PTZ00292 84 TIKNFKRNGVNTSFVSRTENS--------STGLAMIFVDTKTGNNEIVIIPGANNALTPQM---V-DAQTDNIQNICKYL 151 (326)
T ss_pred HHHHHHHcCCChhhEEEcCCC--------CCcEEEEEEeCCCCceEEEEeCCccccCCHHH---H-HHHHHHhhhhCCEE
Confidence 999999999999999766654 3888899888 788888765433211111111 1 112234566 8999
Q ss_pred EEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCCC-----
Q 017305 238 FCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLR----- 312 (374)
Q Consensus 238 ~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~~----- 312 (374)
++++ ..+.+.+.++++.+++.|.++++|++++.. .|. .+.+.++++++|++++|++|++.++|..
T Consensus 152 ~~~~----~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~-~~~-----~~~~~~~l~~~dii~~n~~E~~~l~g~~~~~~~ 221 (326)
T PTZ00292 152 ICQN----EIPLETTLDALKEAKERGCYTVFNPAPAPK-LAE-----VEIIKPFLKYVSLFCVNEVEAALITGMEVTDTE 221 (326)
T ss_pred EECC----CCCHHHHHHHHHHHHHcCCEEEEECCCCcc-ccc-----cccHHHHHhcCCEEcCCHHHHHHHhCCCCCChh
Confidence 9873 456677888999999999999999987542 111 1456788999999999999999998853
Q ss_pred CHHHHHHHHHHcCCCccEEEEEcCCCceEEEeCCc-eEEecCceeeeecccchhhhhcCCC
Q 017305 313 NPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSS-ISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 313 ~~~~~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~-~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
+..++++.+.+.++ +.||||+|++|++++.+++ .+++|++++++||||||||+|.+|+
T Consensus 222 ~~~~~~~~l~~~g~--~~vvvT~G~~Ga~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~ 280 (326)
T PTZ00292 222 SAFKASKELQQLGV--ENVIITLGANGCLIVEKENEPVHVPGKRVKAVDTTGAGDCFVGSM 280 (326)
T ss_pred HHHHHHHHHHHcCC--CeEEEEeCCCcEEEEeCCCceEEccCCccccCCCcchHHHHHHHH
Confidence 23456677878776 7899999999999988765 5899999999999999999998875
No 7
>PLN02967 kinase
Probab=100.00 E-value=2.8e-36 Score=297.43 Aligned_cols=273 Identities=18% Similarity=0.153 Sum_probs=201.4
Q ss_pred cEEEECCeeEEEeecCCCCC-CCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHHHH
Q 017305 83 DVATLGNLCVDIVLNVPQLP-PPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLL 161 (374)
Q Consensus 83 ~vlviG~~~~D~i~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~ 161 (374)
.|+|+|++++|++......- .....+. ..++....++......+||+++|+|++|+|||.++.|+|+||+|.+|++++
T Consensus 198 ~V~~iGe~l~D~~p~g~~~~~l~~~~~~-~~~~~~~s~~~~~~~~~GGa~aNVAvaLARLG~~v~fIg~VGdD~~G~~ll 276 (581)
T PLN02967 198 LVCCFGAAQHAFVPSGRPANRLLDYEIH-ERMKDAFWAPEKFVRAPGGSAGGVAIALASLGGKVAFMGKLGDDDYGQAML 276 (581)
T ss_pred eEEEECchhheecccCccchhhhhcccc-ccccccccCccceeeecCcHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHHH
Confidence 59999999999975310000 0000000 001111223445566789999999999999999999999999999999999
Q ss_pred HHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcccHHHHhhccCCcEEEEec
Q 017305 162 DVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNG 241 (374)
Q Consensus 162 ~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~~~g 241 (374)
+.|+++||+++++.+.++. .|+.+++.++++|++.+.++.. .+...+. ..+.....+.+++++|+++
T Consensus 277 ~~L~~~GVDts~v~~~~~~--------~Tgla~V~vd~~Gerr~~~~~~----gAd~~L~-~~di~~~~l~~A~i~hfgg 343 (581)
T PLN02967 277 YYLNVNKVQTRSVCIDGKR--------ATAVSTMKIAKRGRLKTTCVKP----CAEDSLS-KSEINIDVLKEAKMFYFNT 343 (581)
T ss_pred HHHHHcCCcccceEecCCC--------CCcEEEEEECCCCceEEEEecC----ChhhhCC-hhhcCHhHhcCCCEEEEeC
Confidence 9999999999999877664 4899999999999877643211 1111111 0111134578899999998
Q ss_pred CCC-CCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCCCCH------
Q 017305 242 YGF-DELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRNP------ 314 (374)
Q Consensus 242 ~~~-~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~~~~------ 314 (374)
+.+ .+...+.+..+++.|++.|++|+||++.+.. +|......++.+.++++++|||++|++|+..|+|..+.
T Consensus 344 ~~ll~e~~~~all~alk~Ak~~Gv~VsFDpNlR~~-lw~~~e~~~e~i~elL~~aDILk~NeeEl~~LtG~~~~~e~~~~ 422 (581)
T PLN02967 344 HSLLDPTMRSTTLRAIKISKKLGGVIFYDLNLPLP-LWSSSEETKSFIQEAWNLADIIEVTKQELEFLCGIEPTEEFDTK 422 (581)
T ss_pred chhcccchHHHHHHHHHHHHHCCCEEEEECCCCcc-cccchHHHHHHHHHHHHhCCEEEECHHHHHHHhCCCcccccccc
Confidence 754 3445678899999999999999999998763 66544455677889999999999999999999985321
Q ss_pred -----------HHHHHHHHHcCCCccEEEEEcCCCceEEEeCCc---eEEecCceee--eecccchhhhhcCCC
Q 017305 315 -----------ITAGQELLRKGLRTKWVVVKMGPRGSILVTKSS---ISCAPAFKVL--QLQWVVVLVGMWQPW 372 (374)
Q Consensus 315 -----------~~~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~---~~~~pa~~v~--vVDttGagdaf~~G~ 372 (374)
.+.++.+...|+ +.||||+|++|++++.++. ...+|+++++ +||||||||+|.+|+
T Consensus 423 ~~~~~~~~~~~~e~a~~l~~~g~--k~VVVTlG~~Ga~~~~~~~~~~v~~~~a~~V~V~vVDTTGAGDAF~AGf 494 (581)
T PLN02967 423 DNDKSKFVHYSPEVVAPLWHENL--KVLFVTNGTSKIHYYTKEHNGAVHGMEDAPITPFTSDMSASGDGIVAGL 494 (581)
T ss_pred ccchhccccchHHHHHHHHhCCC--CEEEEEECccceEEEECCCceeEeeccCCCCCCCCCCCCchhHHHHHHH
Confidence 244566766666 7899999999999998754 3445666666 599999999999886
No 8
>PTZ00247 adenosine kinase; Provisional
Probab=100.00 E-value=3.7e-36 Score=286.89 Aligned_cols=274 Identities=18% Similarity=0.225 Sum_probs=205.9
Q ss_pred CCCccEEEECCeeEEEeecCCC------CCCCchhhHHHHh-----hhhhcCCCCCccccCCcHHHHHHHHHHcC---C-
Q 017305 79 VKSIDVATLGNLCVDIVLNVPQ------LPPPSRDARKAYM-----DQLSASPPDKQYWEAGGNCNVAIAAARLG---L- 143 (374)
Q Consensus 79 ~~~~~vlviG~~~~D~i~~~~~------~p~~~~~~~~~~~-----~~~~~~~~~~~~~~GG~a~NvA~~larLG---~- 143 (374)
|+.++|+|+|++++|+++.+++ .|..|++...... ...... ......+||+++|+|+++++|| .
T Consensus 3 ~~~~~i~~iG~~~~D~~~~v~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~GG~~~N~A~~la~lg~~g~~ 81 (345)
T PTZ00247 3 SAPKKLLGFGNPLLDISAHVSDEFLEKYGLELGSAILAEEKQLPIFEELESI-PNVSYVPGGSALNTARVAQWMLQAPKG 81 (345)
T ss_pred CCCceEEEECCceEEEEEeeCHHHHHHcCCCCCceeechHHHHHHHHHHHhc-cCceecCCCHHHHHHHHHHHHhcCCCC
Confidence 5778999999999999999985 4777765432110 000111 1345678999999999999885 5
Q ss_pred CeEEEEEecCchhHHHHHHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcc
Q 017305 144 DCVTIGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKL 223 (374)
Q Consensus 144 ~~~~v~~vG~D~~G~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l 223 (374)
++.++|.||+|.+|+++++.|+++||+++++. .++. +|+.+++++++ |+|+++...+.......++ +
T Consensus 82 ~v~~ig~vG~D~~G~~i~~~l~~~GVd~~~~~-~~~~--------~Tg~~~i~v~~-~~r~~~~~~ga~~~l~~~~---i 148 (345)
T PTZ00247 82 FVCYVGCVGDDRFAEILKEAAEKDGVEMLFEY-TTKA--------PTGTCAVLVCG-KERSLVANLGAANHLSAEH---M 148 (345)
T ss_pred cEEEEEEeccchhHHHHHHHHHHcCCeeeccc-cCCC--------CcEEEEEEEcC-CCcccccCcchhhcCChHH---c
Confidence 89999999999999999999999999998875 3433 48999998874 7888765332211111111 1
Q ss_pred cH-HHHhhccCCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCH
Q 017305 224 SA-EVKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTS 302 (374)
Q Consensus 224 ~~-~~~~~l~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~ 302 (374)
.. .+.+.+++++++|++++.+. .+.+.+..+++.++++|+++++|++... ++ ...++.+.++++++|++++|+
T Consensus 149 ~~~~~~~~l~~~~~v~~~g~~~~-~~~~~~~~~~~~a~~~g~~v~~d~~~~~--~~---~~~~~~~~~~l~~~Dil~~N~ 222 (345)
T PTZ00247 149 QSHAVQEAIKTAQLYYLEGFFLT-VSPNNVLQVAKHARESGKLFCLNLSAPF--IS---QFFFERLLQVLPYVDILFGNE 222 (345)
T ss_pred CcHHHHHHHhhCCEEEEEEEEec-ccHHHHHHHHHHHHHcCCEEEEECCcHH--HH---HHHHHHHHHHHhhCCEEEeCH
Confidence 11 11235789999999987543 4678899999999999999999987431 10 112345788999999999999
Q ss_pred HHHHHhhC-----CCCHHHHHHHHHHc----CCCccEEEEEcCCCceEEEeCCceEEecCcee---eeecccchhhhhcC
Q 017305 303 DEAESLTG-----LRNPITAGQELLRK----GLRTKWVVVKMGPRGSILVTKSSISCAPAFKV---LQLQWVVVLVGMWQ 370 (374)
Q Consensus 303 ~Ea~~l~g-----~~~~~~~~~~l~~~----g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v---~vVDttGagdaf~~ 370 (374)
+|++.|+| .++.+++++.+.+. +.+.+.||||+|++|++++++++.+++|++++ ++||||||||+|.+
T Consensus 223 ~Ea~~l~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvvT~G~~G~~~~~~~~~~~~~~~~v~~~~vVDTtGAGDaF~a 302 (345)
T PTZ00247 223 EEAKTFAKAMKWDTEDLKEIAARIAMLPKYSGTRPRLVVFTQGPEPTLIATKDGVTSVPVPPLDQEKIVDTNGAGDAFVG 302 (345)
T ss_pred HHHHHHhhccCCCccCHHHHHHHHHhccccccCCCCEEEEecCCCceEEEECCEEEEEeccccCCCCccCCCChHHHHHH
Confidence 99999998 35677888877642 22237899999999999999988888999887 59999999999988
Q ss_pred CC
Q 017305 371 PW 372 (374)
Q Consensus 371 G~ 372 (374)
|+
T Consensus 303 gf 304 (345)
T PTZ00247 303 GF 304 (345)
T ss_pred HH
Confidence 75
No 9
>PLN02323 probable fructokinase
Probab=100.00 E-value=3.9e-36 Score=285.15 Aligned_cols=263 Identities=22% Similarity=0.307 Sum_probs=202.2
Q ss_pred CCccEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHH
Q 017305 80 KSIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRF 159 (374)
Q Consensus 80 ~~~~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~ 159 (374)
+.++|+++|++++|++..+++.|.... . .....+||+++|+|++|++||.++.++|.+|+|.+|++
T Consensus 9 ~~~~i~~iG~~~vD~~~~~~~~~~~~~-------~-------~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~g~~ 74 (330)
T PLN02323 9 ESSLVVCFGEMLIDFVPTVSGVSLAEA-------P-------AFKKAPGGAPANVAVGISRLGGSSAFIGKVGDDEFGHM 74 (330)
T ss_pred CCCcEEEechhhhhhccCCCCCCcccc-------c-------ceeecCCChHHHHHHHHHhcCCceeEEEEecCChhHHH
Confidence 556799999999999988766654211 1 22345799999999999999999999999999999999
Q ss_pred HHHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcccHHHHhhccCCcEEEE
Q 017305 160 LLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFC 239 (374)
Q Consensus 160 i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~~ 239 (374)
+++.|++.||+++++.+.++.+ |+.+++.++++|+|++....+........ .+.+. .+.+++++++|+
T Consensus 75 i~~~L~~~GI~~~~v~~~~~~~--------t~~~~i~~~~~g~r~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~ 142 (330)
T PLN02323 75 LADILKKNGVNNEGVRFDPGAR--------TALAFVTLRSDGEREFMFYRNPSADMLLR-ESELD---LDLIRKAKIFHY 142 (330)
T ss_pred HHHHHHHcCCCCcceEEcCCCC--------ceEEEEEECCCCceeEEeecCCchhccCC-hHHCC---hHHHccCCEEEE
Confidence 9999999999999998777653 88899988888998876432111000000 01111 235678899998
Q ss_pred ecCCC-CCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCCCCH--HH
Q 017305 240 NGYGF-DELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRNP--IT 316 (374)
Q Consensus 240 ~g~~~-~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~~~~--~~ 316 (374)
+++.. .+...+.+..+++.+++.|.+|++|++.+.. .|......++.+.++++++|++++|++|+..++|.... ++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~-~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~g~~~~~~~~ 221 (330)
T PLN02323 143 GSISLITEPCRSAHLAAMKIAKEAGALLSYDPNLRLP-LWPSAEAAREGIMSIWDEADIIKVSDEEVEFLTGGDDPDDDT 221 (330)
T ss_pred echhccCchHHHHHHHHHHHHHHcCCEEEEcCCCChh-hccCHHHHHHHHHHHHHhCCEEEcCHHHHHHHhCCCCccHHH
Confidence 87653 2222355678889999999999999997653 44333445667788999999999999999999986532 23
Q ss_pred HHHHHHHcCCCccEEEEEcCCCceEEEeCCceEEecCceeeeecccchhhhhcCCC
Q 017305 317 AGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 317 ~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
+. +++..|+ +.+|||+|++|++++.+++.+++|++++++||||||||+|++|+
T Consensus 222 ~~-~~~~~g~--~~vvvt~G~~G~~~~~~~~~~~~~~~~v~vvDttGAGDaf~Agf 274 (330)
T PLN02323 222 VV-KLWHPNL--KLLLVTEGEEGCRYYTKDFKGRVEGFKVKAVDTTGAGDAFVGGL 274 (330)
T ss_pred HH-HHHhcCC--CEEEEecCCCceEEEeCCCceEeCCccCCCCCCCCcHHHHHHHH
Confidence 33 4555666 78999999999999988877889999999999999999998875
No 10
>PRK15074 inosine/guanosine kinase; Provisional
Probab=100.00 E-value=1.6e-35 Score=286.04 Aligned_cols=290 Identities=16% Similarity=0.201 Sum_probs=209.8
Q ss_pred CCcCCCCCCcchhhhcccCCCCccEEEECCeeEEEeecCCC-------CCCCc-----hhhHHHHhhhhhcCCCCCcccc
Q 017305 60 APSNSQNGTAHDWKLRSSGVKSIDVATLGNLCVDIVLNVPQ-------LPPPS-----RDARKAYMDQLSASPPDKQYWE 127 (374)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~vlviG~~~~D~i~~~~~-------~p~~~-----~~~~~~~~~~~~~~~~~~~~~~ 127 (374)
||+..+..-..++ +.-.+.++.+|+++|++.+|+...++. +++.+ ++......+.+...+......+
T Consensus 13 ~~~~~~~~~~~~~-~~~~~~~~~~v~g~GNaLvDi~~~v~d~fL~~~~l~kg~m~li~~e~~~~l~~~l~~~~~~~~~~~ 91 (434)
T PRK15074 13 FPVNARDPLLQQI-QPENETSRTYIVGIDQTLVDIEAKVDDEFLERYGLSKGHSLVIEDDVAEALYQELKQNNLITHEFA 91 (434)
T ss_pred cccCCCCcccccc-ccccCCCCCcEEEeCCceeeEEEeeCHHHHHHcCCCCCceEecCHHHHHHHHHHHhhccccccccC
Confidence 4555554322222 223345677999999999999999753 33222 1111222333432211134457
Q ss_pred CCcHHHHHHHHHHcC-CCeEEEEEecCc-hhHHHHHHHHH--hcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCc
Q 017305 128 AGGNCNVAIAAARLG-LDCVTIGHVGNE-IYGRFLLDVLQ--DEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRH 203 (374)
Q Consensus 128 GG~a~NvA~~larLG-~~~~~v~~vG~D-~~G~~i~~~L~--~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r 203 (374)
||+++|+|+++++|| .++.|+|+||+| .+|+++++.|+ +.||+++++...+. +|+.++++++++|+|
T Consensus 92 GGsaaNtA~~lArLGG~~~~fig~VGdDd~~G~~~~~~L~~~~~GVdt~~v~~~~~---------~TG~~~VlV~~dGeR 162 (434)
T PRK15074 92 GGTIGNTLHNYSVLADDRSVLLGVMSSNIEIGSYAYRYLCNTSSRTDLNYLQGVDG---------PIGRCFTLISEDGER 162 (434)
T ss_pred CCHHHHHHHHHHHcCCCCeEEEEEeCCCHHHHHHHHHHhhhhhCCccCcceEEcCC---------CCEEEEEEECCCCCE
Confidence 999999999999996 999999999999 69999999997 58999998865432 499999999999999
Q ss_pred cccccCCCCCCchhhhhhcccHHHHhhccCCcEEEEecCCCC----CCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCC
Q 017305 204 GFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGYGFD----ELSPALIISALEYAAQVGTSIFFDPGPRGKSLSS 279 (374)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~~~g~~~~----~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~ 279 (374)
+++.+.+.......+ .+. .+.+++++++|++||.+. +...+.+.++++.|++.|++|++|++.+.. ++.
T Consensus 163 t~~t~~GA~~~Lt~e---dld---~~~i~~a~ilyl~Gy~l~~~~~~~~~~a~~~al~~Ake~G~~VslD~s~~~~-v~~ 235 (434)
T PRK15074 163 TFAISPGHMNQLRPE---SIP---EDVIAGASALVLTAYLVRCKPGEPMPEATMKAIEYAKKHNVPVVLTLGTKFV-IED 235 (434)
T ss_pred EEEEecChhhcCChh---HCC---HhHhccCCEEEEeeeehhcccCCCcHHHHHHHHHHHHHcCCEEEEECcchhh-ccc
Confidence 987654322111111 111 345889999999998753 234678889999999999999999997642 221
Q ss_pred CChHHHHHHHhhhccCcEEecCHHHHHHhhCCCCHHHHHHHHHHcCCCccEEEEEcCCCceEEEeCC-------ce----
Q 017305 280 GTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRNPITAGQELLRKGLRTKWVVVKMGPRGSILVTKS-------SI---- 348 (374)
Q Consensus 280 ~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~~~~~~~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~-------~~---- 348 (374)
..+ .....+++++|++++|++|+..|+|..+++++++.+.+. + +.||||+|++|++++..+ ..
T Consensus 236 ~~~---~~~e~l~~~vDILf~NeeEa~~LtG~~d~eea~~~L~~~-~--~~VVVTlG~~Ga~v~~~~~~~~~~~~~~~~~ 309 (434)
T PRK15074 236 NPQ---WWQEFLKEHVSILAMNEDEAEALTGESDPLLASDKALDW-V--DLVLCTAGPIGLYMAGYTEDEAKRETQHPLL 309 (434)
T ss_pred cHH---HHHHHHHhcCCEEEcCHHHHHHHhCCCCHHHHHHHHHcC-C--CEEEEEECCCCEEEEecccccccCceeeecc
Confidence 111 112345679999999999999999988898888888764 4 789999999999997522 22
Q ss_pred ----------------------------EEecCc---eeeeecccchhhhhcCCC
Q 017305 349 ----------------------------SCAPAF---KVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 349 ----------------------------~~~pa~---~v~vVDttGagdaf~~G~ 372 (374)
+++|++ ++++||||||||+|++|+
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vDttGAGD~f~~gf 364 (434)
T PRK15074 310 PGAIAEFNRYEFSRAMRKKDCQNPLRVYSHIAPYMGGPEKIMNTNGAGDGALSAL 364 (434)
T ss_pred ccccccccchhcccchhccccccccccccccCcccCCCCcceeCCCcHHHHHHHH
Confidence 288888 789999999999998875
No 11
>cd01167 bac_FRK Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.
Probab=100.00 E-value=1.7e-35 Score=276.35 Aligned_cols=255 Identities=26% Similarity=0.370 Sum_probs=204.4
Q ss_pred cEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHHHHH
Q 017305 83 DVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLD 162 (374)
Q Consensus 83 ~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~~ 162 (374)
||+|+|++++|++...++. .. .....+||+++|+|.++++||.++.++|.+|+|.+|+++++
T Consensus 1 ~ilviG~~~~D~~~~~~~~--~~----------------~~~~~~GG~~~n~a~~l~~lg~~v~~i~~vG~D~~g~~i~~ 62 (295)
T cd01167 1 KVVCFGEALIDFIPEGSGA--PE----------------TFTKAPGGAPANVAVALARLGGKAAFIGKVGDDEFGDFLLE 62 (295)
T ss_pred CEEEEcceeEEEecCCCCC--Cc----------------cccccCCCcHHHHHHHHHhcCCCeEEEEeecCcHHHHHHHH
Confidence 6999999999999765443 00 22345699999999999999999999999999999999999
Q ss_pred HHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcccH-HHHhhccCCcEEEEec
Q 017305 163 VLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSA-EVKTAIKHSKVLFCNG 241 (374)
Q Consensus 163 ~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~-~~~~~l~~~~~v~~~g 241 (374)
.|+++||++.++.+.++. +|+.++++++++|+|.+........ .+. ... ...+.+++++++|+++
T Consensus 63 ~l~~~gi~~~~~~~~~~~--------~T~~~~~~~~~~g~r~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~v~~~~ 128 (295)
T cd01167 63 TLKEAGVDTRGIQFDPAA--------PTTLAFVTLDADGERSFEFYRGPAA----DLL--LDTELNPDLLSEADILHFGS 128 (295)
T ss_pred HHHHcCCCchheeecCCC--------CceEEEEEECCCCCEeEEeecCCcH----hhh--cCccCChhHhccCCEEEEec
Confidence 999999999988766554 3888999998888888765322111 010 111 1234578899999987
Q ss_pred CCC-CCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCCCCHHHHHHH
Q 017305 242 YGF-DELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRNPITAGQE 320 (374)
Q Consensus 242 ~~~-~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~~~~~~~~~~ 320 (374)
+.. .....+.+.++++.+++.|.++++|++.+.. +|.......+.+.++++++|++++|++|+..++|..+..++++.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~g~~v~~d~~~~~~-~~~~~~~~~~~~~~~l~~~d~l~~n~~E~~~l~~~~~~~~~~~~ 207 (295)
T cd01167 129 IALASEPSRSALLELLEAAKKAGVLISFDPNLRPP-LWRDEEEARERIAELLELADIVKLSDEELELLFGEEDPEEIAAL 207 (295)
T ss_pred hhhccchHHHHHHHHHHHHHHcCCEEEEcCCCChh-hcCCHHHHHHHHHHHHHhCCEEEecHHHHHHHhCCCCHHHHHHH
Confidence 643 2223467888999999999999999986542 44333334566788999999999999999999998888888888
Q ss_pred HHHcCCCccEEEEEcCCCceEEEeCCceEEecCceeeeecccchhhhhcCCC
Q 017305 321 LLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 321 l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
+.+.|+ +.+|||+|++|++++++++.+++|++++++||||||||+|++|+
T Consensus 208 l~~~g~--~~vvvt~G~~G~~~~~~~~~~~~~a~~~~vvDttGAGD~f~a~~ 257 (295)
T cd01167 208 LLLFGL--KLVLVTRGADGALLYTKGGVGEVPGIPVEVVDTTGAGDAFVAGL 257 (295)
T ss_pred HhhcCC--CEEEEecCCcceEEEECCcceeeCCCCcceeeCCCccHHHHHHH
Confidence 888876 88999999999999998888999999999999999999998875
No 12
>PRK09434 aminoimidazole riboside kinase; Provisional
Probab=100.00 E-value=1.7e-35 Score=277.68 Aligned_cols=253 Identities=23% Similarity=0.256 Sum_probs=201.1
Q ss_pred ccEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHHHH
Q 017305 82 IDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLL 161 (374)
Q Consensus 82 ~~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~ 161 (374)
.+|+++|++++|++. ..+.. ....+||+++|+|+++++||.++.++|.+|+|.+|++++
T Consensus 3 ~~il~iG~~~iD~~~------~~~~~---------------~~~~~GG~~~N~a~~l~~LG~~~~~v~~vG~D~~g~~i~ 61 (304)
T PRK09434 3 NKVWVLGDAVVDLIP------EGENR---------------YLKCPGGAPANVAVGIARLGGESGFIGRVGDDPFGRFMQ 61 (304)
T ss_pred CcEEEecchheeeec------CCCCc---------------eeeCCCChHHHHHHHHHHcCCCceEEEEecCchHHHHHH
Confidence 389999999999982 22211 123469999999999999999999999999999999999
Q ss_pred HHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcccHHHHhhccCCcEEEEec
Q 017305 162 DVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNG 241 (374)
Q Consensus 162 ~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~~~g 241 (374)
+.|+++||+++++...++.+ |+.+++.++++|+|++...... . .+. .+.....+.+.+++++|+++
T Consensus 62 ~~l~~~gI~~~~~~~~~~~~--------t~~~~i~~~~~g~r~~~~~~~~---~-~~~--~~~~~~~~~~~~~~~~~~~~ 127 (304)
T PRK09434 62 QTLQDEGVDTTYLRLDPAHR--------TSTVVVDLDDQGERSFTFMVRP---S-ADL--FLQPQDLPPFRQGEWLHLCS 127 (304)
T ss_pred HHHHHcCCCCcceEEcCCCC--------ceEEEEEECCCCCEeEEEecCC---c-hhh--hCCHHHhhhhcCCCEEEEcc
Confidence 99999999999988776653 8888888888888886432111 0 000 11122223367899999998
Q ss_pred CCCC-CCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCCCCHHHHHHH
Q 017305 242 YGFD-ELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRNPITAGQE 320 (374)
Q Consensus 242 ~~~~-~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~~~~~~~~~~ 320 (374)
+... +...+...++++.+++.|..+++|++.+.. .|......++.+.++++++|++++|++|+..++|..+.+++++.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~~~-~~~~~~~~~~~~~~~l~~~dil~~n~~e~~~l~g~~~~~~~~~~ 206 (304)
T PRK09434 128 IALSAEPSRSTTFEAMRRIKAAGGFVSFDPNLRED-LWQDEAELRECLRQALALADVVKLSEEELCFLSGTSQLEDAIYA 206 (304)
T ss_pred ccccCchHHHHHHHHHHHHHHcCCEEEECCCCChh-hccCHHHHHHHHHHHHHhcceeeCCHHHHHHHhCCCCHHHHHHH
Confidence 7543 223456678889999999999999997653 55433445677788999999999999999999998888899999
Q ss_pred HHH-cCCCccEEEEEcCCCceEEEeCCceEEecCceeeeecccchhhhhcCCC
Q 017305 321 LLR-KGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 321 l~~-~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
+.+ .++ +.+|||+|++|++++++++.+++|++++++||||||||+|.+|+
T Consensus 207 l~~~~g~--~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~vDttGAGD~f~ag~ 257 (304)
T PRK09434 207 LADRYPI--ALLLVTLGAEGVLVHTRGQVQHFPAPSVDPVDTTGAGDAFVAGL 257 (304)
T ss_pred HHhhcCC--cEEEEEecCCceEEEeCCceeEeCCCCCCCCcCCCchHHHHHHH
Confidence 887 455 78999999999999998888999999999999999999998875
No 13
>cd01944 YegV_kinase_like YegV-like sugar kinase. Found only in bacteria, YegV-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=2.1e-35 Score=274.96 Aligned_cols=255 Identities=24% Similarity=0.373 Sum_probs=196.9
Q ss_pred cEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHHHHH
Q 017305 83 DVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLD 162 (374)
Q Consensus 83 ~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~~ 162 (374)
+|+++|++++|++..++++|..+..... . .....+|| +.|+|+++++||.++.++|.+|+|.+|+++++
T Consensus 1 ~i~~iG~~~~D~i~~~~~~~~~~~~~~~---~-------~~~~~~GG-~~Nva~~l~~lG~~~~~~~~vG~D~~g~~i~~ 69 (289)
T cd01944 1 KVLVIGAAVVDIVLDVDKLPASGGDIEA---K-------SKSYVIGG-GFNVMVAASRLGIPTVNAGPLGNGNWADQIRQ 69 (289)
T ss_pred CeEEEcceeEEEEeecccCCCCCCcccc---c-------eeeeccCc-HHHHHHHHHHcCCCeEEEEEecCChHHHHHHH
Confidence 4899999999999999998887754321 1 23456799 99999999999999999999999999999999
Q ss_pred HHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcccHHHHhhccCCcEEEEecC
Q 017305 163 VLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGY 242 (374)
Q Consensus 163 ~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~~~g~ 242 (374)
.|++.||+++++.+. +. .|+.++++++++|+|+++...+.......++++ ...+.+++++|++++
T Consensus 70 ~l~~~gi~~~~~~~~-~~--------~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 134 (289)
T cd01944 70 AMRDEGIEILLPPRG-GD--------DGGCLVALVEPDGERSFISISGAEQDWSTEWFA------TLTVAPYDYVYLSGY 134 (289)
T ss_pred HHHHcCCcccccccc-CC--------CCeEEEEEEcCCCceEEEEeCCccCCCCHHHhc------cccCCCCCEEEEeCc
Confidence 999999999988664 32 377778888888999876543322111111111 113678999999998
Q ss_pred CCCCC--CHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCCCCH--HHHH
Q 017305 243 GFDEL--SPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRNP--ITAG 318 (374)
Q Consensus 243 ~~~~~--~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~~~~--~~~~ 318 (374)
.+... ..+.+.++++.++ .+.++++|++++.. .| ..+.++++++++|++++|++|++.|+|..+. ..++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~-~~~~v~~D~~~~~~-~~-----~~~~~~~~l~~~d~~~~n~~E~~~l~g~~~~~~~~~~ 207 (289)
T cd01944 135 TLASENASKVILLEWLEALP-AGTTLVFDPGPRIS-DI-----PDTILQALMAKRPIWSCNREEAAIFAERGDPAAEASA 207 (289)
T ss_pred cccCcchhHHHHHHHHHhcc-CCCEEEEcCccccc-cc-----CHHHHHHHHhcCCEEccCHHHHHHHhCCCCcchHHHH
Confidence 65322 3556666766644 57899999997653 22 1345788999999999999999999996543 2346
Q ss_pred HHHHHcCCCccEEEEEcCCCceEEEe-CCceEEecCceeeeecccchhhhhcCCC
Q 017305 319 QELLRKGLRTKWVVVKMGPRGSILVT-KSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 319 ~~l~~~g~~~~~vvvT~G~~Ga~~~~-~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
+.+.+.++ +.||||+|++|++++. +++.+++|++++++|||||+||+|.+|+
T Consensus 208 ~~~~~~~~--~~vvvt~G~~Ga~~~~~~~~~~~~~~~~~~vvDt~GAGDaf~ag~ 260 (289)
T cd01944 208 LRIYAKTA--APVVVRLGSNGAWIRLPDGNTHIIPGFKVKAVDTIGAGDTHAGGM 260 (289)
T ss_pred HHHHhccC--CeEEEEECCCcEEEEecCCCeEEecCCCCCCccCCCchHHHHHHH
Confidence 77778776 7899999999999998 4567888999999999999999998875
No 14
>KOG2855 consensus Ribokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-35 Score=269.28 Aligned_cols=265 Identities=28% Similarity=0.350 Sum_probs=212.8
Q ss_pred CCCccEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHH
Q 017305 79 VKSIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGR 158 (374)
Q Consensus 79 ~~~~~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~ 158 (374)
+.++.|+|+|++++|++..++++|.++++.. +....+.+||+++|+|++++|||.++.|||+||+|.||+
T Consensus 7 ~~~~~vv~fGs~~~D~V~~~~~~p~~ge~~~----------~~~f~~~~GG~~aN~AvaaarLG~~~afiGkvGdD~fG~ 76 (330)
T KOG2855|consen 7 GEPPLVVVFGSMLIDFVPSTRRLPNAGETWE----------PPGFKTAPGGKGANQAVAAARLGGRVAFIGKVGDDEFGD 76 (330)
T ss_pred cCCceEEEeccceeeeeeccccCCCcccccc----------CCcceecCCCcchhhhhHHHhcCcceeeeecccchhhHH
Confidence 4667899999999999999999999987542 235667889999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCcccccc--CCCCCCchhhhhhcccHHHHhhccCCcE
Q 017305 159 FLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSR--ADFSKEPAFSWMNKLSAEVKTAIKHSKV 236 (374)
Q Consensus 159 ~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~--~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 236 (374)
.+++.|++.||+++++..+++.+ |+++.+.+..+|++.+... ++....+ ...+...+.++++++
T Consensus 77 ~l~~~L~~~~V~~~~v~~~~~~~--------T~~a~i~v~~dG~~~~~~v~gan~~~~~------~~se~~~~~i~~ak~ 142 (330)
T KOG2855|consen 77 DLLDILKQNGVDTSGVKFDENAR--------TACATITVSKDGENRIIFVRGANADMLP------EDSELNLEVIKEAKV 142 (330)
T ss_pred HHHHHHhhCCcccccceecCCCc--------eEEEEEEEccCCceEEEEEecCchhcCc------ccccccHHHHhhccE
Confidence 99999999999999999888764 8999999999999876543 2222111 123445677899999
Q ss_pred EEEecCCCCCCCHH-HHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCCCCHH
Q 017305 237 LFCNGYGFDELSPA-LIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRNPI 315 (374)
Q Consensus 237 v~~~g~~~~~~~~~-~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~~~~~ 315 (374)
+|+++..+.+.+.. .....++.+++.+..+.+||+.+.. +|......+..+..++..+|++..+++|++.++|..+.
T Consensus 143 ~~~q~ei~~~~~~~s~~~~~~~~~~~~g~~i~~~pn~~l~-l~~~~~~ne~e~~~i~~~adv~~~s~~e~~fl~~~~~~- 220 (330)
T KOG2855|consen 143 FHCQSEILIEEPMRSLHIAAVKVAKNAGPAIFYDPNLRLP-LWDSLEENESEIASIWNMADVIKVSSQELAFLTGIEDD- 220 (330)
T ss_pred EEEeeecCCcchhHHHHHhhhhhhhcccccccCCCCcccc-ccccccccHHHHHHHhhhhhcccccHHHHHHhccCccc-
Confidence 99987654333322 2222245777888888889998875 66654445556888999999999999999999988443
Q ss_pred HHHHHHHHcCCCccEEEEEcCCCceEEEeCCceE-EecCceeeeecccchhhhhcCCC
Q 017305 316 TAGQELLRKGLRTKWVVVKMGPRGSILVTKSSIS-CAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 316 ~~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~-~~pa~~v~vVDttGagdaf~~G~ 372 (374)
+.. .|...+. |.||||+|++|+.+++++..- ++|+++|++||||||||+|++|+
T Consensus 221 ~~~-~L~~~~~--k~viVTlG~kG~~y~tk~~~~~~v~~~~V~~VDtTGAGDsFvgal 275 (330)
T KOG2855|consen 221 KIL-KLWHMKL--KLVIVTLGEKGCRYYTKDFKGSHVPAFKVKAVDTTGAGDSFVGAL 275 (330)
T ss_pred hHH-HHhccCC--CEEEEEeCCCceEEEecCCCCCCCCCcccccccCCCchHHHHHHH
Confidence 334 6777766 899999999999999986544 99999999999999999999875
No 15
>cd01166 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.
Probab=100.00 E-value=1.5e-34 Score=269.68 Aligned_cols=257 Identities=28% Similarity=0.359 Sum_probs=197.2
Q ss_pred cEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHHHHH
Q 017305 83 DVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLD 162 (374)
Q Consensus 83 ~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~~ 162 (374)
+|+|+|++++|++...+. +... . ......+||+++|+|++|++||.++.++|.+|+|.+|+++++
T Consensus 1 ~i~~iG~~~iD~~~~~~~-----~~~~---~-------~~~~~~~GG~~~N~a~~la~lg~~~~~i~~vG~D~~g~~i~~ 65 (294)
T cd01166 1 DVVTIGEVMVDLSPPGGG-----RLEQ---A-------DSFRKFFGGAEANVAVGLARLGHRVALVTAVGDDPFGRFILA 65 (294)
T ss_pred CeEEechhheeeecCCCC-----ccch---h-------hccccccCChHHHHHHHHHhcCCceEEEEecCCCHHHHHHHH
Confidence 589999999999976432 1111 1 133456799999999999999999999999999999999999
Q ss_pred HHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcccHH-H-HhhccCCcEEEEe
Q 017305 163 VLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAE-V-KTAIKHSKVLFCN 240 (374)
Q Consensus 163 ~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~-~-~~~l~~~~~v~~~ 240 (374)
.|++.||+++++.+.++. +|+.+++.++++|+|.+....+.. ... .+..+ + ...+++++++|++
T Consensus 66 ~l~~~gi~~~~~~~~~~~--------~t~~~~~~~~~~g~r~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~v~~~ 131 (294)
T cd01166 66 ELRREGVDTSHVRVDPGR--------PTGLYFLEIGAGGERRVLYYRAGS---AAS---RLTPEDLDEAALAGADHLHLS 131 (294)
T ss_pred HHHHcCCCCceEEEeCCC--------cceEEEEEecCCCCceEEEeCCCC---hhH---hCChhhCCHHHHhCCCEEEEc
Confidence 999999999999766654 388999998877888765442211 111 11111 1 3457899999999
Q ss_pred cCCCCCCC--HHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCCCCHHHHH
Q 017305 241 GYGFDELS--PALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRNPITAG 318 (374)
Q Consensus 241 g~~~~~~~--~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~~~~~~~~ 318 (374)
++.+...+ .+.+.++++.+++.+.++++|++.+.. +| ......+.+.++++++|++++|++|++.+++.....++.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~~~-~~-~~~~~~~~~~~~~~~~dil~~n~~E~~~l~~~~~~~~~~ 209 (294)
T cd01166 132 GITLALSESAREALLEALEAAKARGVTVSFDLNYRPK-LW-SAEEAREALEELLPYVDIVLPSEEEAEALLGDEDPTDAA 209 (294)
T ss_pred CcchhhCHHHHHHHHHHHHHHHHcCCEEEECCCCcch-hc-ChHHHHHHHHHHHHhCCEEEcCHHHHHHHhCCCCchhHH
Confidence 87653333 377888999999999999999987542 22 122334566788999999999999999999875433333
Q ss_pred HHHH--HcCCCccEEEEEcCCCceEEEeCCceEEecCceeeeecccchhhhhcCCC
Q 017305 319 QELL--RKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 319 ~~l~--~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
+.+. +.|. +.+|||+|++|++++++++.+++|+++++++||||+||+|++|+
T Consensus 210 ~~~~~l~~g~--~~viit~G~~G~~~~~~~~~~~~~~~~~~~vdt~GAGD~f~a~~ 263 (294)
T cd01166 210 ERALALALGV--KAVVVKLGAEGALVYTGGGRVFVPAYPVEVVDTTGAGDAFAAGF 263 (294)
T ss_pred HHHHhhcCCc--cEEEEEEcCCceEEEECCceEEeCCCCcccccCCCchHHHHHHH
Confidence 3333 4665 78999999999999998888999999999999999999998775
No 16
>PLN02543 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=5e-35 Score=286.08 Aligned_cols=271 Identities=18% Similarity=0.164 Sum_probs=193.3
Q ss_pred ccEEEECCeeEEEeecCCCCCCCch--hhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHH
Q 017305 82 IDVATLGNLCVDIVLNVPQLPPPSR--DARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRF 159 (374)
Q Consensus 82 ~~vlviG~~~~D~i~~~~~~p~~~~--~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~ 159 (374)
..|+|+|++.+|++...... ..+. .+. +.++.++..+......+||+++|+|++++|||.++.|+|+||+|.+|++
T Consensus 126 ~~v~~~Ge~liDf~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~f~~~~GGa~aNVAvaLARLG~~vafIG~VGdD~fG~~ 203 (496)
T PLN02543 126 PLVCCFGAVQKEFVPTVRVH-DNQMHPDMY-SQWKMLQWDPPEFARAPGGPPSNVAISHVRLGGRAAFMGKVGDDDFGEE 203 (496)
T ss_pred CeEEEeChhhhhhcCCCccc-ccccccccc-cccccccccCCeeEeccCcHHHHHHHHHHHCCCCEEEEEEeCCCHHHHH
Confidence 35999999999999652210 0000 000 0011122222244556799999999999999999999999999999999
Q ss_pred HHHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEEC--CCCCcccc-ccCCCCCCchhhhhhcccHHHHhhccCCcE
Q 017305 160 LLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVD--PSQRHGFC-SRADFSKEPAFSWMNKLSAEVKTAIKHSKV 236 (374)
Q Consensus 160 i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~--~~g~r~~~-~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 236 (374)
+++.|+++|||++++.+.++. .|+.+++.++ .+| +.+. .+.. .+...+. ..+...+.+.++++
T Consensus 204 l~~~L~~~GVDts~v~~~~~~--------~Tgla~V~v~~~~~g-r~~~~~~~~----gA~~~L~-~~di~~~~l~~a~i 269 (496)
T PLN02543 204 LVLMMNKERVQTRAVKFDENA--------KTACSRMKIKFRDGG-KMVAETVKE----AAEDSLL-ASELNLAVLKEARM 269 (496)
T ss_pred HHHHHHHcCCcccceEecCCC--------CCceEEEEEEeCCCC-CEEEEecCC----CHHHhCC-hhhcCHhHhCCCce
Confidence 999999999999999887765 3888888874 445 4443 2211 1111111 11112345789999
Q ss_pred EEEecCCCC-CCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCCC---
Q 017305 237 LFCNGYGFD-ELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLR--- 312 (374)
Q Consensus 237 v~~~g~~~~-~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~~--- 312 (374)
+|++++.+. +...+.+..+++.|++.|+.|+||++.+.. +|....+.++.+.++++++||+++|++|++.|+|..
T Consensus 270 lh~~~~~l~~~~~~~a~~~al~~Ak~~G~~VsfDpN~R~~-LW~~~~~~~~~i~~~l~~aDIl~~SeeEa~~Ltg~~~~~ 348 (496)
T PLN02543 270 FHFNSEVLTSPSMQSTLFRAIELSKKFGGLIFFDLNLPLP-LWRSRDETRELIKKAWNEADIIEVSRQELEFLLDEDYYE 348 (496)
T ss_pred EEECChhhcCchHHHHHHHHHHHHHHCCCEEEEeCCCCcc-ccCCHHHHHHHHHHHHHhCCEEEecHHHHHHHhCCCccc
Confidence 999987642 223577889999999999999999998864 776656667778899999999999999999999853
Q ss_pred --------------------------CHHHHHHHHHHcCCCccEEEEEcCCCceEEEeCCceEEecCc-----eeeeecc
Q 017305 313 --------------------------NPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAF-----KVLQLQW 361 (374)
Q Consensus 313 --------------------------~~~~~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~-----~v~vVDt 361 (374)
++++ +..+.+.|+ +.||||+|++|++++.++....++.. +..+|||
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~g~--~~VVVT~G~~Ga~~~t~~~~g~v~~~~~~~v~~~~VDT 425 (496)
T PLN02543 349 RKRNYPPQYYAESFEQTKNWRDYYHYTPEE-IAPLWHDGL--KLLLVTDGTLRIHYYTPKFDGVVVGTEDVLITPFTCDR 425 (496)
T ss_pred ccccccchhhhhhhhhhhcccccccCCHHH-HHHHHHCCC--CEEEEEcCCCcEEEEECCCcccccccccccCCCCCcCC
Confidence 2233 456777776 78999999999999986422222111 1225899
Q ss_pred cchhhhhcCCC
Q 017305 362 VVVLVGMWQPW 372 (374)
Q Consensus 362 tGagdaf~~G~ 372 (374)
|||||+|.+|+
T Consensus 426 TGAGDAF~AGf 436 (496)
T PLN02543 426 TGSGDAVVAAI 436 (496)
T ss_pred CchHHHHHHHH
Confidence 99999999885
No 17
>COG0524 RbsK Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.6e-34 Score=270.46 Aligned_cols=256 Identities=30% Similarity=0.449 Sum_probs=205.8
Q ss_pred cEEEECCeeEEEeec-CCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHHHH
Q 017305 83 DVATLGNLCVDIVLN-VPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLL 161 (374)
Q Consensus 83 ~vlviG~~~~D~i~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~ 161 (374)
+|+++|++++|++.. .+.+|..++..... .....+||++.|+|++++|||.++.++|+||+|.+|++++
T Consensus 1 ~v~~iG~~~vD~~~~~~~~~~~~~~~~~~~----------~~~~~~GG~~~N~A~~~a~lG~~~~~~~~vG~D~~g~~~~ 70 (311)
T COG0524 1 DVVVIGEANVDLIAQVVDRLPEPGETVLGD----------FFKVAGGGKGANVAVALARLGAKVALIGAVGDDDFGEFLL 70 (311)
T ss_pred CEEEECchhhheehhhccCCCCCccccccc----------ceeecCCchHHHHHHHHHHcCCceEEEEEecCcHHHHHHH
Confidence 489999999999997 77788777543210 1234567779999999999999999999999999999999
Q ss_pred HHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcccH-HHH-hhccCCcEEEE
Q 017305 162 DVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSA-EVK-TAIKHSKVLFC 239 (374)
Q Consensus 162 ~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~-~~~-~~l~~~~~v~~ 239 (374)
+.|++.|||++++....+. +|+.+++.++++|+|.+....+. .. . .+.. ++. ..+..++++|+
T Consensus 71 ~~l~~~GVd~~~~~~~~~~--------~tg~~~i~~~~~g~r~~~~~~~~-a~---~---~~~~~~~~~~~~~~~~~~~~ 135 (311)
T COG0524 71 EELRKEGVDTSHVVTDEGA--------TTGLALILVDEDGERTFVFYRGA-AA---L---LLTPEDLDEDELAGADVLHI 135 (311)
T ss_pred HHHHHcCCccceEEEcCCC--------cceEEEEEEcCCCceeEEEECCc-cc---c---cCChHHcChHHHhhcCeeeE
Confidence 9999999999999877763 48999999999999998765431 00 0 1222 222 45778999999
Q ss_pred ecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCC-CCHHHHH
Q 017305 240 NGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGL-RNPITAG 318 (374)
Q Consensus 240 ~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~-~~~~~~~ 318 (374)
+++.+... ++.+..+++.+++.|..+++|++++.. +|. ++.+.++++++|++++|++|++.++|. .+..+..
T Consensus 136 ~~~~l~~~-~~~~~~~~~~a~~~g~~v~~d~~~~~~-~~~-----~~~~~~~l~~~d~~~~n~~E~~~l~g~~~~~~~~~ 208 (311)
T COG0524 136 SGIQLEIP-PEALLAALELAKAAGVTVSFDLNPRPA-LWD-----RELLEELLALADILFPNEEEAELLTGLEEDAEAAA 208 (311)
T ss_pred EEeecCCC-hHHHHHHHHHHHHcCCeEEEecCCCcc-ccc-----hhhHHHHHhhCCEEeCCHHHHHHHhCCCccHHHHH
Confidence 98875333 388999999999999999999998874 332 466789999999999999999999995 6666666
Q ss_pred HHHHHcCCCccEEEEEcCCCceEEEeCCc---eEEecCceeeeecccchhhhhcCCC
Q 017305 319 QELLRKGLRTKWVVVKMGPRGSILVTKSS---ISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 319 ~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~---~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
+.++..++ +.+|+|+|++|++++++++ ....+++++++||||||||+|.+|+
T Consensus 209 ~~~~~~~~--~~vvvt~G~~Ga~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~agf 263 (311)
T COG0524 209 ALLLAKGV--KTVVVTLGAEGAVVFTGGGEVTVPVPAAFKVKVVDTTGAGDAFAAGF 263 (311)
T ss_pred HHHhhcCC--CEEEEEeCCCcEEEEeCCCceeeccCCCCccccccCCCchHHHHHHH
Confidence 66777776 8899999999999999854 3344477889999999999998875
No 18
>cd01942 ribokinase_group_A Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=1.4e-34 Score=267.92 Aligned_cols=244 Identities=25% Similarity=0.327 Sum_probs=191.5
Q ss_pred cEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHHHHH
Q 017305 83 DVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLD 162 (374)
Q Consensus 83 ~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~~ 162 (374)
||+|+|++++|+++.++++|..++... . ......+||++.|+|.++++||.++.++|.+|+|.+|+++++
T Consensus 1 ~v~~iG~~~~D~~~~v~~~p~~~~~~~---~-------~~~~~~~GG~~~Nva~~l~~lg~~~~~~~~vG~D~~g~~i~~ 70 (279)
T cd01942 1 DVAVVGHLNYDIILKVESFPGPFESVL---V-------KDLRREFGGSAGNTAVALAKLGLSPGLVAAVGEDFHGRLYLE 70 (279)
T ss_pred CEEEEecceeeeEeecccCCCCCceEe---c-------ceeeecCCcHHHHHHHHHHHcCCCceEEEEecCCcchHHHHH
Confidence 689999999999999999998765321 1 134566799999999999999999999999999999999999
Q ss_pred HHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcccHHHHhhccCCcEEEEecC
Q 017305 163 VLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGY 242 (374)
Q Consensus 163 ~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~~~g~ 242 (374)
.|++.||+++++...++. +|+.++++++++|+|.++...+.... ++.. + ....+++++++|++++
T Consensus 71 ~l~~~gi~~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~-~~~~~~~~~~~~~~~~ 135 (279)
T cd01942 71 ELREEGVDTSHVRVVDED--------STGVAFILTDGDDNQIAYFYPGAMDE-----LEPN-D-EADPDGLADIVHLSSG 135 (279)
T ss_pred HHHHcCCCccceEEcCCC--------CcceEEEEEcCCCCEEEEecCCcccc-----cccC-C-chhhhcccCEEEeCCc
Confidence 999999999999665543 38888888888888877533221111 1110 1 2345788999999864
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHH---HHhhCCCCHHHHHH
Q 017305 243 GFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEA---ESLTGLRNPITAGQ 319 (374)
Q Consensus 243 ~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea---~~l~g~~~~~~~~~ 319 (374)
. .+.++++.+++.|.++++|++++...++ .+.+.++++++|++++|++|+ ..+++..+...
T Consensus 136 ~-------~~~~~~~~~~~~g~~v~~D~~~~~~~~~------~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~--- 199 (279)
T cd01942 136 P-------GLIELARELAAGGITVSFDPGQELPRLS------GEELEEILERADILFVNDYEAELLKERTGLSEAEL--- 199 (279)
T ss_pred h-------HHHHHHHHHHHcCCeEEEcchhhhhhcc------HHHHHHHHhhCCEEecCHHHHHHHHhhcCCChHHH---
Confidence 2 4667777888889999999997643221 245678899999999999999 56666543321
Q ss_pred HHHHcCCCccEEEEEcCCCceEEEeCCceEEecCc-eeeeecccchhhhhcCCC
Q 017305 320 ELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAF-KVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 320 ~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~-~v~vVDttGagdaf~~G~ 372 (374)
..+. +.||+|+|++|++++.+++.+++|++ ++++||||||||+|++|+
T Consensus 200 ---~~~~--~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~vvDttGAGDaf~a~~ 248 (279)
T cd01942 200 ---ASGV--RVVVVTLGPKGAIVFEDGEEVEVPAVPAVKVVDTTGAGDAFRAGF 248 (279)
T ss_pred ---hcCC--CEEEEEECCCceEEEECCceEEccCcCcCCCcCCCCchHHHHHHH
Confidence 1555 78999999999999998889999997 889999999999998875
No 19
>PRK09850 pseudouridine kinase; Provisional
Probab=100.00 E-value=3.3e-34 Score=269.95 Aligned_cols=252 Identities=18% Similarity=0.181 Sum_probs=191.5
Q ss_pred CccEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHHH
Q 017305 81 SIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFL 160 (374)
Q Consensus 81 ~~~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i 160 (374)
+..|+|+|++++|++..++..+..+... +......+||+++|+|+++++||.++.++|.||+|.+|+++
T Consensus 4 ~~~i~~iG~~~vD~~~~~~~~~~~~~~~-----------~~~~~~~~GG~~~NvA~~l~~lG~~~~~ig~vG~D~~g~~i 72 (313)
T PRK09850 4 KDYVVIIGSANIDVAGYSHESLNYADSN-----------PGKIKFTPGGVGRNIAQNLALLGNKAWLLSAVGSDFYGQSL 72 (313)
T ss_pred CCcEEEECcEEEeeeccCCCcCcCCCCC-----------ceEEEEeCCcHHHHHHHHHHHcCCCeEEEEEecCchhHHHH
Confidence 4479999999999998865544433221 11234567999999999999999999999999999999999
Q ss_pred HHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccC-CCCCCchhhhhhcccHHHHhhccCCcEEEE
Q 017305 161 LDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRA-DFSKEPAFSWMNKLSAEVKTAIKHSKVLFC 239 (374)
Q Consensus 161 ~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~-~~~~~~~~~~~~~l~~~~~~~l~~~~~v~~ 239 (374)
++.|++.||+++++...++. +|+.++++++++|++.+.... +.... ......+...+.+++++++++
T Consensus 73 ~~~l~~~gVd~~~~~~~~~~--------~T~~~~~~~~~~g~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~ 140 (313)
T PRK09850 73 LTQTNQSGVYVDKCLIVPGE--------NTSSYLSLLDNTGEMLVAINDMNISNA----ITAEYLAQHREFIQRAKVIVA 140 (313)
T ss_pred HHHHHHcCCCchheeecCCC--------CceEEEEEecCCCCEEEEecCchHhhh----CCHHHHHHHHHHHhcCCEEEE
Confidence 99999999999998776654 389999999988998764321 11100 000111122345788999999
Q ss_pred ecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCC-----CCH
Q 017305 240 NGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGL-----RNP 314 (374)
Q Consensus 240 ~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~-----~~~ 314 (374)
++ ..+.+.+..+++++ .++++++|++.. |. ...+.++++++|++++|++|+..|+|. ++.
T Consensus 141 ~~----~~~~~~~~~~~~~~--~g~~v~~D~~~~----~~-----~~~~~~~l~~~dil~~N~~Ea~~l~g~~~~~~~~~ 205 (313)
T PRK09850 141 DC----NISEEALAWILDNA--ANVPVFVDPVSA----WK-----CVKVRDRLNQIHTLKPNRLEAETLSGIALSGREDV 205 (313)
T ss_pred eC----CCCHHHHHHHHHhc--cCCCEEEEcCCH----HH-----HHHHHhhhccceEEccCHHHHHHHhCCCCCCHHHH
Confidence 74 34566666666643 588999999842 10 123567889999999999999999984 346
Q ss_pred HHHHHHHHHcCCCccEEEEEcCCCceEEEeC-CceEEecCceeeeecccchhhhhcCCC
Q 017305 315 ITAGQELLRKGLRTKWVVVKMGPRGSILVTK-SSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 315 ~~~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~-~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
+++++.+.+.|+ +.+|||+|++|++++.+ ++..++|++++++||||||||+|++|+
T Consensus 206 ~~~~~~l~~~g~--~~vvvT~G~~G~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~agf 262 (313)
T PRK09850 206 AKVAAWFHQHGL--NRLVLSMGGDGVYYSDISGESGWSAPIKTNVINVTGAGDAMMAGL 262 (313)
T ss_pred HHHHHHHHHcCC--CEEEEEeCCceEEEEcCCCCeEecCCCCcccccCCCcHHHHHHHH
Confidence 678888888876 78999999999999975 456678998999999999999998875
No 20
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (TIGR02199) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=100.00 E-value=3.6e-34 Score=269.97 Aligned_cols=258 Identities=20% Similarity=0.249 Sum_probs=193.2
Q ss_pred cCCCCccEEEECCeeEEEeec--CCCC----CCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEE
Q 017305 77 SGVKSIDVATLGNLCVDIVLN--VPQL----PPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGH 150 (374)
Q Consensus 77 ~~~~~~~vlviG~~~~D~i~~--~~~~----p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~ 150 (374)
++|++.+|+++|+.++|.++. ++++ |.+... .+ .....+|| ++|+|.++++||.++.++|.
T Consensus 3 ~~~~~~~il~iG~~~iD~~~~~~~~~~~~~~~~~~~~-----~~-------~~~~~~GG-a~NvA~~l~~lg~~v~~i~~ 69 (315)
T TIGR02198 3 ASFKGAKVLVVGDVMLDRYWYGKVSRISPEAPVPVVK-----VE-------REEDRLGG-AANVARNIASLGARVFLVGV 69 (315)
T ss_pred hhhCCCcEEEECceeEeeeeeecccccCCCCCCceEE-----EE-------EEEecCcH-HHHHHHHHHhcCCceEEEEE
Confidence 456788999999999999987 5443 222111 01 12334576 79999999999999999999
Q ss_pred ecCchhHHHHHHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcccHHHHhh
Q 017305 151 VGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTA 230 (374)
Q Consensus 151 vG~D~~G~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~ 230 (374)
||+|.+|+++++.|+++||+++++.+.++. +|+.+++++++++........... .........+.+...+.
T Consensus 70 vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 140 (315)
T TIGR02198 70 VGDDEAGKRLEALLAEEGIDTSGLIRDKDR--------PTTTKTRVLARNQQLLRVDFEERD-PINAELEARLLAAIREQ 140 (315)
T ss_pred EecchhHHHHHHHHHHCCCCcceEEECCCC--------CcceEEEEEcCCeEEEEecCCCCC-CCCHHHHHHHHHHHHhh
Confidence 999999999999999999999988776654 377788887753322121111100 01111111122333456
Q ss_pred ccCCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhC
Q 017305 231 IKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTG 310 (374)
Q Consensus 231 l~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g 310 (374)
+++++++|++++....++.+.+..+++.++++|++|++|+++.. ...++++|++++|++|++.+++
T Consensus 141 l~~~~~v~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~--------------~~~~~~~d~l~~n~~E~~~l~~ 206 (315)
T TIGR02198 141 LASADAVVLSDYAKGVLTPRVVQEVIAAARKHGKPVLVDPKGKD--------------FSRYRGATLITPNRKEAEAAVG 206 (315)
T ss_pred hhhCCEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEeCCCcc--------------hhhcCCCcEECCCHHHHHHHhC
Confidence 88999999998866667788899999999999999999998652 1357789999999999999998
Q ss_pred C----CCHHHHHHHHHH-cCCCccEEEEEcCCCceEEEeC-CceEEecCceeeeecccchhhhhcCCC
Q 017305 311 L----RNPITAGQELLR-KGLRTKWVVVKMGPRGSILVTK-SSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 311 ~----~~~~~~~~~l~~-~g~~~~~vvvT~G~~Ga~~~~~-~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
. .+.+++++.+++ .|+ +.||||+|++|++++++ ++.+++|++++++||||||||+|.+|+
T Consensus 207 ~~~~~~~~~~~~~~l~~~~g~--~~vivT~G~~G~~~~~~~~~~~~~~~~~~~vvdt~GAGDaf~ag~ 272 (315)
T TIGR02198 207 ACDTEAELVQAAEKLLEELDL--EALLVTRSEKGMTLFTREGEPIHIPAQAREVYDVTGAGDTVIATL 272 (315)
T ss_pred CCCCHHHHHHHHHHHHHHcCC--CEEEEEcCCCCeEEEecCCCeEEecCCCCCCCCCcCccHHHHHHH
Confidence 4 234566666664 566 88999999999999884 568899999999999999999998875
No 21
>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer membrane of gram-negative bacteria. RfaE consists of two domains, a sugar kinase domain, represented here, and a domain belonging to the cytidylyltransferase superfamily.
Probab=100.00 E-value=4.4e-34 Score=267.93 Aligned_cols=255 Identities=20% Similarity=0.260 Sum_probs=189.9
Q ss_pred cEEEECCeeEEEeecC--CCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHHH
Q 017305 83 DVATLGNLCVDIVLNV--PQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFL 160 (374)
Q Consensus 83 ~vlviG~~~~D~i~~~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i 160 (374)
+|+++|+.++|+++.+ +++|..+.... .... .....+|| ++|+|.+|++||.++.++|.+|+|.+|+++
T Consensus 1 ~vl~iG~~~~D~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~GG-~~NvA~~la~LG~~~~~i~~vG~D~~g~~i 71 (304)
T cd01172 1 KVLVVGDVILDEYLYGDVERISPEAPVPV-VKVE-------REEIRLGG-AANVANNLASLGAKVTLLGVVGDDEAGDLL 71 (304)
T ss_pred CEEEEcceeEEeeEeeccccccCCCCcce-EEee-------eEEecCcH-HHHHHHHHHHhCCCeEEEEEEcCCccHHHH
Confidence 5899999999999874 45544322100 0000 22345677 699999999999999999999999999999
Q ss_pred HHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcccHHHHhhccCCcEEEEe
Q 017305 161 LDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCN 240 (374)
Q Consensus 161 ~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~~~ 240 (374)
++.|+++||+++++ ..++. +|+.++++++++ ++.+.................+.+...+.+++++++|++
T Consensus 72 ~~~l~~~gI~~~~~-~~~~~--------~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~s 141 (304)
T cd01172 72 RKLLEKEGIDTDGI-VDEGR--------PTTTKTRVIARN-QQLLRVDREDDSPLSAEEEQRLIERIAERLPEADVVILS 141 (304)
T ss_pred HHHHHhCCCCcceE-ecCCC--------CceEEEEEecCC-cEEEEEecCCCCCCCHHHHHHHHHHHHHhhccCCEEEEE
Confidence 99999999999985 44443 377777777653 443322111110001111111223334568899999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCCC-----CHH
Q 017305 241 GYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLR-----NPI 315 (374)
Q Consensus 241 g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~~-----~~~ 315 (374)
++....++.+.+..+++.+++.|.++++|++... ...++++|++++|++|++.+++.. +.+
T Consensus 142 ~~~~~~~~~~~~~~~~~~a~~~~~~v~~D~~~~~--------------~~~~~~~d~l~~n~~E~~~l~~~~~~~~~~~~ 207 (304)
T cd01172 142 DYGKGVLTPRVIEALIAAARELGIPVLVDPKGRD--------------YSKYRGATLLTPNEKEAREALGDEINDDDELE 207 (304)
T ss_pred cCCCCccCHHHHHHHHHHHHhcCCCEEEeCCCcc--------------hhhccCCcEeCCCHHHHHHHhCCCCCChHHHH
Confidence 8866667788899999999999999999998653 146779999999999999999862 455
Q ss_pred HHHHHHHH-cCCCccEEEEEcCCCceEEEe-CCceEEecCceeeeecccchhhhhcCCC
Q 017305 316 TAGQELLR-KGLRTKWVVVKMGPRGSILVT-KSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 316 ~~~~~l~~-~g~~~~~vvvT~G~~Ga~~~~-~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
++++.+.+ .|+ +.+|||+|++|+++++ +++.+++|++++++||||||||+|++|+
T Consensus 208 ~~~~~l~~~~g~--~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGDaf~ag~ 264 (304)
T cd01172 208 AAGEKLLELLNL--EALLVTLGEEGMTLFERDGEVQHIPALAKEVYDVTGAGDTVIATL 264 (304)
T ss_pred HHHHHHHHHhCC--CeEEEEcCCCccEEEcCCCcEEEecCCCCCCCCCcCccHHHHHHH
Confidence 67777764 455 8899999999999998 7778999999999999999999998875
No 22
>TIGR02152 D_ribokin_bact ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not.
Probab=100.00 E-value=1.1e-33 Score=263.80 Aligned_cols=247 Identities=28% Similarity=0.412 Sum_probs=199.7
Q ss_pred CCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHHHHHHHHhc
Q 017305 88 GNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQDE 167 (374)
Q Consensus 88 G~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~~~L~~~ 167 (374)
|.+++|+++.++++|..++.... . .....+||++.|+|+++++||.++.+++.+|+|.+|+++++.|++.
T Consensus 1 G~~~~D~~~~~~~~p~~~~~~~~---~-------~~~~~~GG~~~Nva~~l~~lg~~~~~~~~vG~D~~g~~i~~~l~~~ 70 (293)
T TIGR02152 1 GSINMDLVLRTDRLPKPGETVHG---H-------SFQIGPGGKGANQAVAAARLGAEVSMIGKVGDDAFGDELLENLKSN 70 (293)
T ss_pred CCceEeEEEEeCCCCCCCCcEec---C-------CceecCCCcHHHHHHHHHHCCCCEEEEEEecCCccHHHHHHHHHHc
Confidence 78999999999999988765421 1 3356779999999999999999999999999999999999999999
Q ss_pred CCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcccHHHHhhccCCcEEEEecCCCCCC
Q 017305 168 GIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGYGFDEL 247 (374)
Q Consensus 168 GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~~~g~~~~~~ 247 (374)
||+++++...++. +|+.++++++++|+|+++...+.......+. + +...+.+.++++++++ .+.
T Consensus 71 gi~~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~----~~~ 134 (293)
T TIGR02152 71 GIDTEYVGTVKDT--------PTGTAFITVDDTGENRIVVVAGANAELTPED---I-DAAEALIAESDIVLLQ----LEI 134 (293)
T ss_pred CCCeeEEEEcCCC--------CCceEEEEEcCCCCEEEEEECCcCCcCCHHH---H-HHHHhhhccCCEEEEe----cCC
Confidence 9999999776554 3888999998888887764332211111111 1 1223457889999987 355
Q ss_pred CHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCCC-----CHHHHHHHHH
Q 017305 248 SPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLR-----NPITAGQELL 322 (374)
Q Consensus 248 ~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~~-----~~~~~~~~l~ 322 (374)
+.+.+.++++.+++++.++++|++.....+ ..++++++|++++|++|+..+++.. +.+++++.+.
T Consensus 135 ~~~~~~~~~~~~~~~~~~v~~D~~~~~~~~----------~~~~~~~~d~l~~n~~E~~~l~~~~~~~~~~~~~~~~~l~ 204 (293)
T TIGR02152 135 PLETVLEAAKIAKKHGVKVILNPAPAIKDL----------DDELLSLVDIITPNETEAEILTGIEVTDEEDAEKAAEKLL 204 (293)
T ss_pred CHHHHHHHHHHHHHcCCEEEEECCcCcccc----------hHHHHhcCCEEccCHHHHHHHhCCCCCCcchHHHHHHHHH
Confidence 678888999999999999999998642111 1578899999999999999998864 4667888888
Q ss_pred HcCCCccEEEEEcCCCceEEEeCCceEEecCceeeeecccchhhhhcCCC
Q 017305 323 RKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 323 ~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
++|+ +.+|||+|++|++++++++.+++|+++++++||+|+||+|++|+
T Consensus 205 ~~g~--~~vvvt~G~~g~~~~~~~~~~~~~~~~~~~vdt~GAGDaf~Ag~ 252 (293)
T TIGR02152 205 EKGV--KNVIITLGSKGALLVSKDESKLIPAFKVKAVDTTAAGDTFNGAF 252 (293)
T ss_pred HcCC--CeEEEEeCCCceEEEeCCceeEccCCCCceeCCCCcHHHHHHHH
Confidence 8877 88999999999999998888899999999999999999998875
No 23
>cd01945 ribokinase_group_B Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .
Probab=100.00 E-value=4.4e-34 Score=265.40 Aligned_cols=247 Identities=21% Similarity=0.272 Sum_probs=192.7
Q ss_pred cEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHHHHH
Q 017305 83 DVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLD 162 (374)
Q Consensus 83 ~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~~ 162 (374)
+|+++|++++|++..++++|..++... .. .....+||+++|+|.+|++||.++.++|.+|+|.+|+++++
T Consensus 1 ~i~~iG~~~iD~~~~~~~~p~~~~~~~---~~-------~~~~~~GG~~~NvA~~l~~lG~~~~~~~~vG~D~~g~~i~~ 70 (284)
T cd01945 1 RVLGVGLAVLDLIYLVASFPGGDGKIV---AT-------DYAVIGGGNAANAAVAVARLGGQARLIGVVGDDAIGRLILA 70 (284)
T ss_pred CEEEECcceeEEEEEeccCCCCCCeEE---Ee-------EEEEecCCHHHHHHHHHHHcCCCeEEEEEecCchHHHHHHH
Confidence 589999999999999999888765421 11 23456799999999999999999999999999999999999
Q ss_pred HHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcccHHHHhhccCCcEEEEecC
Q 017305 163 VLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGY 242 (374)
Q Consensus 163 ~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~~~g~ 242 (374)
.|++.||+++++...++.+ |+++++ .+.+|++.+........... .+.+.+ ..+++++++|++++
T Consensus 71 ~l~~~gI~~~~~~~~~~~~--------t~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~v~i~~~ 135 (284)
T cd01945 71 ELAAEGVDTSFIVVAPGAR--------SPISSI-TDITGDRATISITAIDTQAA---PDSLPD---AILGGADAVLVDGR 135 (284)
T ss_pred HHHHcCCCccceeecCCCC--------CccEEE-EccCCCceEEEecCCCCCCC---cccCCH---HHhCcCCEEEEcCC
Confidence 9999999999998766543 666655 34456665443222111111 112222 23789999999865
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCCCCHHHHHHHHH
Q 017305 243 GFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRNPITAGQELL 322 (374)
Q Consensus 243 ~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~~~~~~~~~~l~ 322 (374)
. ++...++++.+++.|.++++|.++.. . .+ +.++++++|++++|++|++.+++..+. ++++.+.
T Consensus 136 ~-----~~~~~~~~~~~~~~g~~v~~~~~~~~--~-------~~-~~~~~~~~dil~~n~~e~~~l~~~~~~-~~~~~l~ 199 (284)
T cd01945 136 Q-----PEAALHLAQEARARGIPIPLDLDGGG--L-------RV-LEELLPLADHAICSENFLRPNTGSADD-EALELLA 199 (284)
T ss_pred C-----HHHHHHHHHHHHHcCCCeeEeccCCc--c-------cc-hHHHhccCCEEEeChhHHhhhcCCCHH-HHHHHHH
Confidence 3 46778899999999987777765432 1 11 567889999999999999999987654 6777787
Q ss_pred HcCCCccEEEEEcCCCceEEEe-CCceEEecCceeeeecccchhhhhcCCC
Q 017305 323 RKGLRTKWVVVKMGPRGSILVT-KSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 323 ~~g~~~~~vvvT~G~~Ga~~~~-~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
+.++ +.+|||+|++|++++. +++.+++|++++++||||||||+|++|+
T Consensus 200 ~~~~--~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vvDt~GAGDaf~ag~ 248 (284)
T cd01945 200 SLGI--PFVAVTLGEAGCLWLERDGELFHVPAFPVEVVDTTGAGDVFHGAF 248 (284)
T ss_pred hcCC--cEEEEEECCCCeEEEcCCCCEEecCCCccccccCCCcHHHHHHHH
Confidence 7776 8899999999999998 6778899999999999999999998875
No 24
>PLN02379 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=2.8e-33 Score=267.86 Aligned_cols=270 Identities=21% Similarity=0.221 Sum_probs=199.6
Q ss_pred cCCCCccEEEEC-CeeEEEeecCCC-------CCCCc-----hhhHHHHhhhhhcC-------CCCCccccCCcHHHHHH
Q 017305 77 SGVKSIDVATLG-NLCVDIVLNVPQ-------LPPPS-----RDARKAYMDQLSAS-------PPDKQYWEAGGNCNVAI 136 (374)
Q Consensus 77 ~~~~~~~vlviG-~~~~D~i~~~~~-------~p~~~-----~~~~~~~~~~~~~~-------~~~~~~~~GG~a~NvA~ 136 (374)
+..++++|+.+| ++.+|+...++. +++.+ ++........+..+ +...+..+||+++|+|+
T Consensus 15 ~~~~~~~v~g~g~nalvD~~~~v~~~~l~~~~~~kg~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~GGsa~N~a~ 94 (367)
T PLN02379 15 DGPRPPLVLGLQPVALVDHVARVDWSLLDQIPGDRGGSIRVTIEELEHILREVNAHILPSPDDLSPIKTMAGGSVANTIR 94 (367)
T ss_pred CCCCCCcEEEEccccEEEEEEecCHHHHHHcCCCCcceeecCHHHHHHHHHHhhhcccccccccccceecCCCHHHHHHH
Confidence 345678899999 999999998753 23221 11122223333221 11245668999999999
Q ss_pred HHHH-cCCCeEEEEEecCchhHHHHHHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCc
Q 017305 137 AAAR-LGLDCVTIGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEP 215 (374)
Q Consensus 137 ~lar-LG~~~~~v~~vG~D~~G~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~ 215 (374)
++++ ||.++.++|+||+|.+|+++++.|++.||+++++...++ +|+.++++++++|+|++....+.....
T Consensus 95 ~la~~LG~~~~~ig~VG~D~~G~~~~~~L~~~GI~~~~~~~~~~---------~Tg~~~v~v~~dgert~~~~lg~~~~l 165 (367)
T PLN02379 95 GLSAGFGVSTGIIGACGDDEQGKLFVSNMGFSGVDLSRLRAKKG---------PTAQCVCLVDALGNRTMRPCLSSAVKL 165 (367)
T ss_pred HHHHhcCCCEEEEEEeCCChhHHHHHHHHHHcCCCccCcccCCC---------CCceEEEEECCCCCccccCCccccccC
Confidence 9986 999999999999999999999999999999888754332 488999999999999876432211111
Q ss_pred hhhhhhcccHHHHhhccCCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhc--
Q 017305 216 AFSWMNKLSAEVKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLS-- 293 (374)
Q Consensus 216 ~~~~~~~l~~~~~~~l~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~-- 293 (374)
.. +.+ ..+.+++++++|++ |.. .+.+.+.++++.|+++|++|++|++.... . ..+++.+.+++.
T Consensus 166 ~~---~~~---~~~~~~~~~~v~v~-~~~--~~~~~~~~~~~~A~~~g~~v~lD~s~~~~-v----~~~r~~l~~ll~~~ 231 (367)
T PLN02379 166 QA---DEL---TKEDFKGSKWLVLR-YGF--YNLEVIEAAIRLAKQEGLSVSLDLASFEM-V----RNFRSPLLQLLESG 231 (367)
T ss_pred Ch---hHC---CHHHHhcCCEEEEE-ccc--CCHHHHHHHHHHHHHcCCEEEEeccchhh-h----hhhhHHHHHHhhcC
Confidence 00 111 13457889999999 532 45788999999999999999999985321 0 112344556664
Q ss_pred cCcEEecCHHHHHHhhCC---CCHHHHHHHHHHcCCCccEEEEEcCCCceEEEeCCceEEecCcee-eeecccchhhhhc
Q 017305 294 TSDVLLLTSDEAESLTGL---RNPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKV-LQLQWVVVLVGMW 369 (374)
Q Consensus 294 ~~Dil~~N~~Ea~~l~g~---~~~~~~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v-~vVDttGagdaf~ 369 (374)
++|++++|++|+..+++. .+.+++++. ++.++ +.+|||+|++|++++.+++.+++|++++ ++||||||||+|.
T Consensus 232 ~vDilf~Ne~Ea~~l~~~~~~~~~~~~~~~-l~~~~--~~vvvT~G~~Ga~~~~~~~~~~v~a~~~~~vVDTtGAGDaFa 308 (367)
T PLN02379 232 KIDLCFANEDEARELLRGEQESDPEAALEF-LAKYC--NWAVVTLGSKGCIARHGKEVVRVPAIGETNAVDATGAGDLFA 308 (367)
T ss_pred CccEEEcCHHHHHHHhcCCCCCCHHHHHHH-HHhcC--CEEEEEECCCCeEEEECCEEEEecCCCCCCcccCCChhHHHH
Confidence 899999999999999863 355555554 45555 7899999999999999888999999974 8999999999998
Q ss_pred CCC
Q 017305 370 QPW 372 (374)
Q Consensus 370 ~G~ 372 (374)
+|+
T Consensus 309 agf 311 (367)
T PLN02379 309 SGF 311 (367)
T ss_pred HHH
Confidence 875
No 25
>PRK09954 putative kinase; Provisional
Probab=100.00 E-value=6.6e-34 Score=273.02 Aligned_cols=249 Identities=18% Similarity=0.194 Sum_probs=188.9
Q ss_pred cEEEECCeeEEEeecCC-CCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHHHH
Q 017305 83 DVATLGNLCVDIVLNVP-QLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLL 161 (374)
Q Consensus 83 ~vlviG~~~~D~i~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~ 161 (374)
.|+|+|++++|+++.++ ++|..++. +......+||+++|+|++++|||.++.++|.||+|.+|++++
T Consensus 59 ~v~viG~~~vD~~~~~~~~~p~~~~~------------~~~~~~~~GG~~~NvA~~larLG~~v~~ig~VG~D~~G~~i~ 126 (362)
T PRK09954 59 YCVVVGAINMDIRGMADIRYPQAASH------------PGTIHCSAGGVGRNIAHNLALLGRDVHLLSAIGDDFYGETLL 126 (362)
T ss_pred cEEEEEEEEEEEEEeeCCcCcCCCCC------------CceEEEecCcHHHHHHHHHHHcCCCeEEEEEECCCHHHHHHH
Confidence 79999999999999887 77776541 112345679999999999999999999999999999999999
Q ss_pred HHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhh-cccHHHHhhccCCcEEEEe
Q 017305 162 DVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMN-KLSAEVKTAIKHSKVLFCN 240 (374)
Q Consensus 162 ~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~-~l~~~~~~~l~~~~~v~~~ 240 (374)
+.|+++||+++++...++.. |+.++++.++++++.+.. .+.. ....+. ...+...+.+.++++++++
T Consensus 127 ~~l~~~GVd~~~~~~~~~~~--------T~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~ 194 (362)
T PRK09954 127 EETRRAGVNVSGCIRLHGQS--------TSTYLAIANRQDETVLAI-NDTH---ILQQLTPQLLNGSRDLIRHAGVVLAD 194 (362)
T ss_pred HHHHHcCCCccceEEcCCCC--------CeEEEEEEcCCCCEEEEE-cCch---hhhcCCHHHHHHHHHHHhcCCEEEEE
Confidence 99999999999988776643 777888777665544432 2110 000000 0111223446788999987
Q ss_pred cCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCCC-----CHH
Q 017305 241 GYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLR-----NPI 315 (374)
Q Consensus 241 g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~~-----~~~ 315 (374)
+ +.+.+.+..+++.+ .++++++|+.+... .+.+.++++++|++++|++|++.++|.. +.+
T Consensus 195 ~----~~~~~~~~~~~~~a--~~~~v~~D~~~~~~---------~~~~~~~l~~~dil~~n~~Ea~~l~g~~~~~~~~~~ 259 (362)
T PRK09954 195 C----NLTAEALEWVFTLA--DEIPVFVDTVSEFK---------AGKIKHWLAHIHTLKPTQPELEILWGQAITSDADRN 259 (362)
T ss_pred C----CCCHHHHHHHHHhC--CCCcEEEECCCHHH---------hhhhhhhhccccEEecCHHHHHHHcCCCCCCHHHHH
Confidence 4 45566666666654 47899999875320 1234678999999999999999999852 245
Q ss_pred HHHHHHHHcCCCccEEEEEcCCCceEEEeCC-ceEEecCceeeeecccchhhhhcCCC
Q 017305 316 TAGQELLRKGLRTKWVVVKMGPRGSILVTKS-SISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 316 ~~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~-~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
++++.+.+.|+ +.||||+|++|++++..+ +.+++|++++++||||||||+|.+|+
T Consensus 260 ~~~~~l~~~g~--~~Vvvt~G~~G~~~~~~~~~~~~~~~~~v~vvDttGAGDaF~Ag~ 315 (362)
T PRK09954 260 AAVNALHQQGV--QQIFVYLPDESVFCSEKDGEQFLLTAPAHTTVDSFGADDGFMAGL 315 (362)
T ss_pred HHHHHHHHcCC--CEEEEEeCCccEEEEeCCCceEeccCCCcccccccchHHHHHHHH
Confidence 77888888887 789999999999988754 46778999999999999999998875
No 26
>TIGR03828 pfkB 1-phosphofructokinase. This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688).
Probab=100.00 E-value=1.2e-33 Score=264.91 Aligned_cols=249 Identities=20% Similarity=0.246 Sum_probs=194.9
Q ss_pred EECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHHHHHHHH
Q 017305 86 TLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQ 165 (374)
Q Consensus 86 viG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~~~L~ 165 (374)
|.=++++|+++.++++| +++.... . ....++||+++|+|+++++||.++.++|.||+| +|+++++.|+
T Consensus 4 ~~~~~~~D~~~~~~~~~-~g~~~~~---~-------~~~~~~GG~~~NvA~~la~lG~~v~~is~vG~D-~g~~~~~~L~ 71 (304)
T TIGR03828 4 VTLNPAIDLTIELDGLT-LGEVNRV---E-------STRIDAGGKGINVSRVLKNLGVDVVALGFLGGF-TGDFIEALLR 71 (304)
T ss_pred EEcchHHeEEEEccccc-cCceeec---c-------cccccCCccHHHHHHHHHHcCCCeEEEEEecCc-hhHHHHHHHH
Confidence 55578999999999998 6665321 1 345567999999999999999999999999999 6999999999
Q ss_pred hcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcccHHHHhhccCCcEEEEecCCCC
Q 017305 166 DEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGYGFD 245 (374)
Q Consensus 166 ~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~~~g~~~~ 245 (374)
+.||+++++...++ |+.++++++++|+++++...+..... ..++.+.+.+.+.+++++++|++|+...
T Consensus 72 ~~gId~~~~~~~~~----------t~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~v~~~g~~~~ 139 (304)
T TIGR03828 72 EEGIKTDFVRVPGE----------TRINVKIKEPSGTETKLNGPGPEISE--EELEALLEKLRAQLAEGDWLVLSGSLPP 139 (304)
T ss_pred HCCCcceEEECCCC----------CeeeEEEEeCCCCEEEEECCCCCCCH--HHHHHHHHHHHHhccCCCEEEEECCCCC
Confidence 99999998876532 55677788878888766543322111 1112222233446889999999998765
Q ss_pred CCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCCC-----CHHHHHHH
Q 017305 246 ELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLR-----NPITAGQE 320 (374)
Q Consensus 246 ~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~~-----~~~~~~~~ 320 (374)
..+.+.+..+++.+++.+.++++|++... + + ..+...+|++++|++|++.++|.. +..++++.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~v~~D~~~~~--~-------~---~~~~~~~~i~~~n~~E~~~l~g~~~~~~~~~~~~~~~ 207 (304)
T TIGR03828 140 GVPPDFYAELIALAREKGAKVILDTSGEA--L-------R---DGLKAKPFLIKPNDEELEELFGRELKTLEEIIEAARE 207 (304)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEECChHH--H-------H---HHHhcCCcEECcCHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 66778899999999999999999987431 1 1 223345799999999999999863 34466777
Q ss_pred HHHcCCCccEEEEEcCCCceEEEeCCceEEecCceeeeecccchhhhhcCCC
Q 017305 321 LLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 321 l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
++++|. +.||||+|++|++++.+++.+++|++++++|||||+||+|.+|+
T Consensus 208 l~~~g~--~~vvvT~G~~G~~~~~~~~~~~~~~~~~~vvDttGAGDaF~a~~ 257 (304)
T TIGR03828 208 LLDLGA--ENVLISLGADGALLVTKEGALFAQPPKGEVVSTVGAGDSMVAGF 257 (304)
T ss_pred HHHcCC--CEEEEccCCCCcEEEcCCceEEEeCCCccccCCcChHHHHHHHH
Confidence 888876 78999999999999988888889999999999999999998875
No 27
>cd01939 Ketohexokinase Ketohexokinase (fructokinase, KHK) catalyzes the phosphorylation of fructose to fructose-1-phosphate (F1P), the first step in the metabolism of dietary fructose. KHK can also phosphorylate several other furanose sugars. It is found in higher eukaryotes where it is believed to function as a dimer and requires K(+) and ATP to be active. In humans, hepatic KHK deficiency causes fructosuria, a benign inborn error of metabolism.
Probab=100.00 E-value=3e-33 Score=260.68 Aligned_cols=249 Identities=16% Similarity=0.174 Sum_probs=185.6
Q ss_pred cEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHHHHH
Q 017305 83 DVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLD 162 (374)
Q Consensus 83 ~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~~ 162 (374)
+|+|+|++++|+++.++++|..++.... . .....+||+++|+|+++++||.++.++|.+|+|++|+++++
T Consensus 1 ~v~~iG~~~vD~~~~v~~~p~~~~~~~~---~-------~~~~~~GG~a~NvA~~la~lG~~~~~~~~vG~D~~g~~~~~ 70 (290)
T cd01939 1 AVLCVGLTVLDFITTVDKYPFEDSDQRT---T-------NGRWQRGGNASNSCTVLRLLGLSCEFLGVLSRGPVFESLLD 70 (290)
T ss_pred CEEEEeeeeeEEEeeecCCCCCCcceEe---e-------eeeEecCCCHHHHHHHHHHcCCceEEEEeecCCHHHHHHHH
Confidence 4899999999999999999987764321 1 22456799999999999999999999999999999999999
Q ss_pred HHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcccHHHHhhccCCcEEEEecC
Q 017305 163 VLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGY 242 (374)
Q Consensus 163 ~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~~~g~ 242 (374)
.|+++||+++++...++.. +..++++++++|+|.++...........+. + ....+++++++|++++
T Consensus 71 ~l~~~gId~~~~~~~~~~~--------~~~~~~~~~~~g~r~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~g~ 136 (290)
T cd01939 71 DFQSRGIDISHCYRKDIDE--------PASSYIIRSRAGGRTTIVNDNNLPEVTYDD---F---SKIDLTQYGWIHFEGR 136 (290)
T ss_pred HHHHcCCceeeeeEcCCCC--------CeeEEEEEcCCCCeEEEEeCCCCCCCCHHH---H---hhhhhccCCEEEEecc
Confidence 9999999999986555432 455677777788887665332211111111 1 1123578999999975
Q ss_pred CCCCCCHHHHHHHHHHHHhcC-------CeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCCCCHH
Q 017305 243 GFDELSPALIISALEYAAQVG-------TSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRNPI 315 (374)
Q Consensus 243 ~~~~~~~~~~~~~~~~a~~~g-------~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~~~~~ 315 (374)
. ++...++++.+++.+ .++++|++... +.+.++++++|++++|++|++.+ |..+.+
T Consensus 137 ~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~-----------~~~~~~l~~~di~~~n~~~~~~~-~~~~~~ 199 (290)
T cd01939 137 N-----PDETLRMMQHIEEHNNRRPEIRITISVEVEKPR-----------EELLELAAYCDVVFVSKDWAQSR-GYKSPE 199 (290)
T ss_pred C-----HHHHHHHHHHHHHhcCcCCCcceEEEEEeccCc-----------hhhhhHHhhCCEEEEEhHHHHhc-CcCCHH
Confidence 4 244567777777766 67889987432 22358899999999999998764 666666
Q ss_pred HHHHHHHHcCCCccEEEEEcCCCceEEEeC-CceEEecCcee-eeecccchhhhhcCCC
Q 017305 316 TAGQELLRKGLRTKWVVVKMGPRGSILVTK-SSISCAPAFKV-LQLQWVVVLVGMWQPW 372 (374)
Q Consensus 316 ~~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~-~~~~~~pa~~v-~vVDttGagdaf~~G~ 372 (374)
+++..+.....+.+.||||+|++|++++.+ ++.+++|++++ ++||||||||+|.+|+
T Consensus 200 ~~~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~vvDt~GAGDsf~agf 258 (290)
T cd01939 200 ECLRGEGPRAKKAALLVCTWGDQGAGALGPDGEYVHSPAHKPIRVVDTLGAGDTFNAAV 258 (290)
T ss_pred HHHHhhhhhccCCcEEEEEcccCCeEEEcCCCCEEEecCCCCCCcccCCCchHHHHHHH
Confidence 655544322222378999999999999876 55778999875 6999999999998775
No 28
>cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases. Found in bacteria and archaea, the guanosine kinase-like group is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=2.6e-33 Score=257.69 Aligned_cols=234 Identities=18% Similarity=0.219 Sum_probs=185.8
Q ss_pred cEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHHHHH
Q 017305 83 DVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLD 162 (374)
Q Consensus 83 ~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~~ 162 (374)
+|+|+|++++|+++.++++|.+++.... ......+||++.|+|++|++||.++.++|.+|+|.+|+++++
T Consensus 1 ~il~iG~~~iD~~~~~~~~~~~~~~~~~----------~~~~~~~GG~~~Nva~~l~~lG~~~~~i~~vG~D~~g~~i~~ 70 (265)
T cd01947 1 KIAVVGHVEWDIFLSLDAPPQPGGISHS----------SDSRESPGGGGANVAVQLAKLGNDVRFFSNLGRDEIGIQSLE 70 (265)
T ss_pred CEEEEeeeeEEEEEEecCCCCCCceeec----------ccceeecCchHHHHHHHHHHcCCceEEEEEecCChHHHHHHH
Confidence 5899999999999999998887754321 134456799999999999999999999999999999999999
Q ss_pred HHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcccHHHHhhccCCcEEEEecC
Q 017305 163 VLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGY 242 (374)
Q Consensus 163 ~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~~~g~ 242 (374)
.|++ ++++.++...+. .|+.++++++++|+|++....... .+.+. .+.+.+++++|++++
T Consensus 71 ~l~~-~~~~~~~~~~~~---------~t~~~~~~~~~~g~r~~~~~~~~~-------~~~~~---~~~~~~~~~~~~~~~ 130 (265)
T cd01947 71 ELES-GGDKHTVAWRDK---------PTRKTLSFIDPNGERTITVPGERL-------EDDLK---WPILDEGDGVFITAA 130 (265)
T ss_pred HHHh-cCCcceEEecCC---------CCceEEEEECCCCcceEEecCCCC-------cccCC---HhHhccCCEEEEecc
Confidence 9999 999888765432 388888989888998876432211 01111 234678999999875
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCCCCHHHHHHHHH
Q 017305 243 GFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRNPITAGQELL 322 (374)
Q Consensus 243 ~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~~~~~~~~~~l~ 322 (374)
. ...++++.+++.+ .+++|++.+.. .+.+.++++++|++++|++|+..+++ ++.+.
T Consensus 131 ~-------~~~~~~~~a~~~~-~~~~d~~~~~~---------~~~~~~~~~~~d~~~~n~~e~~~l~~-------~~~~~ 186 (265)
T cd01947 131 A-------VDKEAIRKCRETK-LVILQVTPRVR---------VDELNQALIPLDILIGSRLDPGELVV-------AEKIA 186 (265)
T ss_pred c-------ccHHHHHHHHHhC-CeEeccCcccc---------chhHHHHhhhCCEEEeCHHHHHHhhh-------HHHHH
Confidence 3 1245666777765 57889876542 12457789999999999999998864 45667
Q ss_pred HcCCCccEEEEEcCCCceEEEeCCceEEecCceeeeecccchhhhhcCCC
Q 017305 323 RKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 323 ~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
+.++ +.+|||+|++|++++++++.+++|+++++++|||||||+|++|+
T Consensus 187 ~~~~--~~viit~G~~Ga~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~ 234 (265)
T cd01947 187 GPFP--RYLIVTEGELGAILYPGGRYNHVPAKKAKVPDSTGAGDSFAAGF 234 (265)
T ss_pred hccC--CEEEEEeCCCCeEEEECCeeEECCCCCCCCCCCCCchHHHHHHH
Confidence 7776 88999999999999998888999999999999999999998875
No 29
>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.
Probab=100.00 E-value=1.2e-32 Score=256.46 Aligned_cols=250 Identities=21% Similarity=0.248 Sum_probs=194.7
Q ss_pred EEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHHHHHH
Q 017305 84 VATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDV 163 (374)
Q Consensus 84 vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~~~ 163 (374)
..++|++++|+++.++++|. ++.... ......+||+++|+|++|++||.++.++|.+|+| +|+++++.
T Consensus 3 ~~~~~~~~~D~~~~~~~~~~-~~~~~~----------~~~~~~~GG~~~Nva~~la~lG~~v~~is~vG~D-~g~~i~~~ 70 (289)
T cd01164 3 YTVTLNPAIDLTIELDQLQP-GEVNRV----------SSTRKDAGGKGINVARVLKDLGVEVTALGFLGGF-TGDFFEAL 70 (289)
T ss_pred EEEecChHHeEEEEcCcccC-Cceeec----------ccccccCCcchhHHHHHHHHcCCCeEEEEEccCc-hhHHHHHH
Confidence 56889999999999999875 443221 1345678999999999999999999999999998 89999999
Q ss_pred HHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcccHHHHhhccCCcEEEEecCC
Q 017305 164 LQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGYG 243 (374)
Q Consensus 164 L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~~~g~~ 243 (374)
|++.||++.++.... +|+..+++.+.+|++..+...+.... ....+.+.+...+.+++++++|++++.
T Consensus 71 l~~~gi~~~~~~~~~----------~t~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~g~~ 138 (289)
T cd01164 71 LKEEGIPDDFVEVAG----------ETRINVKIKEEDGTETEINEPGPEIS--EEELEALLEKLKALLKKGDIVVLSGSL 138 (289)
T ss_pred HHHcCCCceEEECCC----------CCEEEEEEEeCCCCEEEEeCCCCCCC--HHHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence 999999999887642 25566777776676665543322111 112222223334557889999999876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhh-ccCcEEecCHHHHHHhhCCC-----CHHHH
Q 017305 244 FDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFL-STSDVLLLTSDEAESLTGLR-----NPITA 317 (374)
Q Consensus 244 ~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll-~~~Dil~~N~~Ea~~l~g~~-----~~~~~ 317 (374)
....+.+.+..+++.+++.+.++++|++... +.+++ +++|++++|++|++.+++.. +..++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~i~~D~~~~~-------------~~~~~~~~~dil~~n~~E~~~l~~~~~~~~~~~~~~ 205 (289)
T cd01164 139 PPGVPADFYAELVRLAREKGARVILDTSGEA-------------LLAALAAKPFLIKPNREELEELFGRPLGDEEDVIAA 205 (289)
T ss_pred CCCcCHHHHHHHHHHHHHcCCeEEEECChHH-------------HHHHHhcCCcEECCCHHHHHHHhCCCCCCHHHHHHH
Confidence 5445567888999999999999999997431 12333 79999999999999999853 35677
Q ss_pred HHHHHHcCCCccEEEEEcCCCceEEEeCCceEEecCceeeeecccchhhhhcCCC
Q 017305 318 GQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 318 ~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
++.|++++. +.+|||+|++|++++.+++.++++++++++|||||+||+|++|+
T Consensus 206 ~~~l~~~g~--~~vivt~G~~G~~~~~~~~~~~~~~~~~~vvDttGAGDaf~a~~ 258 (289)
T cd01164 206 ARKLIERGA--ENVLVSLGADGALLVTKDGVYRASPPKVKVVSTVGAGDSMVAGF 258 (289)
T ss_pred HHHHHHcCC--CEEEEecCCCCCEEEcCCcEEEecCCCccccCCCChHHHHHHHH
Confidence 788888876 78999999999999988888899999999999999999998764
No 30
>cd01940 Fructoselysine_kinase_like Fructoselysine kinase-like. Fructoselysine is a fructoseamine formed by glycation, a non-enzymatic reaction of glucose with a primary amine followed by an Amadori rearrangement, resulting in a protein that is modified at the amino terminus and at the lysine side chains. Fructoseamines are typically metabolized by fructoseamine-3-kinase, especially in higher eukaryotes. In E. coli, fructoselysine kinase has been shown in vitro to catalyze the phosphorylation of fructoselysine. It is proposed that fructoselysine is released from glycated proteins during human digestion and is partly metabolized by bacteria in the hind gut using a protein such as fructoselysine kinase. This family is found only in bacterial sequences, and its oligomeric state is currently unknown.
Probab=100.00 E-value=1.5e-32 Score=252.39 Aligned_cols=231 Identities=19% Similarity=0.177 Sum_probs=181.3
Q ss_pred cEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHHHHH
Q 017305 83 DVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLD 162 (374)
Q Consensus 83 ~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~~ 162 (374)
+|+++|++++|++.. + ....+||+++|+|.++++||.++.++|.+|+|.+|+++++
T Consensus 1 ~v~~iG~~~~D~~~~------~------------------~~~~~GG~~~Nva~~la~lG~~~~~~~~vG~D~~g~~i~~ 56 (264)
T cd01940 1 RLAAIGDNVVDKYLH------L------------------GKMYPGGNALNVAVYAKRLGHESAYIGAVGNDDAGAHVRS 56 (264)
T ss_pred CeEEEcceEEEEecc------C------------------ceecCCCcHHHHHHHHHHcCCCeeEEecccCchhHHHHHH
Confidence 589999999999853 1 1134699999999999999999999999999999999999
Q ss_pred HHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccC-CCCCCchhhhhhcccHHHHhhccCCcEEEEec
Q 017305 163 VLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRA-DFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNG 241 (374)
Q Consensus 163 ~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~-~~~~~~~~~~~~~l~~~~~~~l~~~~~v~~~g 241 (374)
.|++.||+++++...++ +|+.+++. .++|+|++.... +.. ... ... +...+.+++++++|+++
T Consensus 57 ~l~~~gI~~~~v~~~~~---------~t~~~~~~-~~~g~r~~~~~~~~~~----~~~-~~~-~~~~~~~~~~~~v~~~~ 120 (264)
T cd01940 57 TLKRLGVDISHCRVKEG---------ENAVADVE-LVDGDRIFGLSNKGGV----ARE-HPF-EADLEYLSQFDLVHTGI 120 (264)
T ss_pred HHHHcCCChhheEEcCC---------CCceEEEE-ecCCceEEEeecCCcH----Hhc-ccC-cccHhHHhcCCEEEEcc
Confidence 99999999999876543 26666654 467888765432 111 010 001 11234578999999986
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCCCCHHHHHHHH
Q 017305 242 YGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRNPITAGQEL 321 (374)
Q Consensus 242 ~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~~~~~~~~~~l 321 (374)
+.. .+.+.++++.+++.|++|++|++.+.. .+.+.++++++|++++|++|.. ..+.+++++.+
T Consensus 121 ~~~----~~~~~~~~~~a~~~g~~v~~D~~~~~~---------~~~~~~~~~~~d~~~~~~~~~~----~~~~~~~~~~l 183 (264)
T cd01940 121 YSH----EGHLEKALQALVGAGALISFDFSDRWD---------DDYLQLVCPYVDFAFFSASDLS----DEEVKAKLKEA 183 (264)
T ss_pred ccc----HHHHHHHHHHHHHcCCEEEEcCcccCC---------HHHHHhhcccCCEEEechhhcC----cchHHHHHHHH
Confidence 532 467888999999999999999987521 1335678999999999988763 23456778888
Q ss_pred HHcCCCccEEEEEcCCCceEEEeCCceEEecCceeeeecccchhhhhcCCC
Q 017305 322 LRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 322 ~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
+++++ +.+|||+|++|++++.+++.+++|+++++++|||||||+|.+|+
T Consensus 184 ~~~~~--~~vvvT~G~~G~~~~~~~~~~~~~~~~~~~vDttGAGDaf~ag~ 232 (264)
T cd01940 184 VSRGA--KLVIVTRGEDGAIAYDGAVFYSVAPRPVEVVDTLGAGDSFIAGF 232 (264)
T ss_pred HHcCC--CEEEEEECCCCeEEEeCCeEEecCCcCCCCCCCCCchHHHHHHH
Confidence 88876 78999999999999998888899999999999999999998875
No 31
>cd01941 YeiC_kinase_like YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=9.7e-33 Score=256.82 Aligned_cols=251 Identities=21% Similarity=0.291 Sum_probs=193.0
Q ss_pred cEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHHHHH
Q 017305 83 DVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLD 162 (374)
Q Consensus 83 ~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~~ 162 (374)
.|+++|++++|+++.+++.|.+++... ......+||+++|+|+++++||.++.++|.+|+|.+|+.+++
T Consensus 1 ~v~~~G~~~~D~~~~~~~~~~~~~~~~-----------~~~~~~~GG~~~Nva~~l~~lG~~~~~~~~lG~D~~g~~i~~ 69 (288)
T cd01941 1 EIVVIGAANIDLRGKVSGSLVPGTSNP-----------GHVKQSPGGVGRNIAENLARLGVSVALLSAVGDDSEGESILE 69 (288)
T ss_pred CeEEEEeEEEeeeecccCccccCCCCC-----------eeEEEccCcHHHHHHHHHHHhCCCcEEEEEEecCccHHHHHH
Confidence 389999999999999988777664321 123456799999999999999999999999999999999999
Q ss_pred HHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhh-hcccHHHHhhccCCcEEEEec
Q 017305 163 VLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWM-NKLSAEVKTAIKHSKVLFCNG 241 (374)
Q Consensus 163 ~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~-~~l~~~~~~~l~~~~~v~~~g 241 (374)
.|++.||+++++. .++. +|+.++++++.+|++.+... +.. ....+ ....+.+.+.+.+++++++++
T Consensus 70 ~L~~~gI~~~~~~-~~~~--------~t~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~l~~~~~v~~~~ 136 (288)
T cd01941 70 ESEKAGLNVRGIV-FEGR--------STASYTAILDKDGDLVVALA-DMD---IYELLTPDFLRKIREALKEAKPIVVDA 136 (288)
T ss_pred HHHHcCCccceee-eCCC--------CcceEEEEECCCCCEEEEEe-chH---hhhhCCHHHHHHHHHHHhcCCEEEEeC
Confidence 9999999999886 4443 48888889988888876211 100 00000 011123445688999999874
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCCCC-----HHH
Q 017305 242 YGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRN-----PIT 316 (374)
Q Consensus 242 ~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~~~-----~~~ 316 (374)
..+++.+..+++.+++.+.++++|++.... + ++ +.++++++|++++|++|++.++|... ..+
T Consensus 137 ----~~~~~~~~~~~~~a~~~~~~v~~d~~~~~~-~-------~~-~~~~~~~~dii~~n~~E~~~~~~~~~~~~~~~~~ 203 (288)
T cd01941 137 ----NLPEEALEYLLALAAKHGVPVAFEPTSAPK-L-------KK-LFYLLHAIDLLTPNRAELEALAGALIENNEDENK 203 (288)
T ss_pred ----CCCHHHHHHHHHhhhhcCCcEEEEccchHH-h-------cc-chhhcccceEEeCCHHHHHHHhCcccCCchhHHH
Confidence 456677888899999999999999874321 1 11 12588999999999999999988642 234
Q ss_pred HHHHHHHcCCCccEEEEEcCCCceEEEeC---CceEEecC-ceeeeecccchhhhhcCCC
Q 017305 317 AGQELLRKGLRTKWVVVKMGPRGSILVTK---SSISCAPA-FKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 317 ~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~---~~~~~~pa-~~v~vVDttGagdaf~~G~ 372 (374)
+++.+.+.++ +.+|||+|++|++++++ +..+++|+ +++++|||||+||+|++|+
T Consensus 204 ~~~~~~~~~~--~~vvit~G~~Ga~~~~~~~~~~~~~~~~~~~~~~vDttGAGDaf~a~~ 261 (288)
T cd01941 204 AAKILLLPGI--KNVIVTLGAKGVLLSSREGGVETKLFPAPQPETVVNVTGAGDAFVAGL 261 (288)
T ss_pred HHHHHHHcCC--cEEEEEeCCCcEEEEecCCCceeEEecCCCCccceeCCCcHHHHHHHH
Confidence 5667777776 78999999999999987 56788998 6889999999999998764
No 32
>PF00294 PfkB: pfkB family carbohydrate kinase; InterPro: IPR011611 This entry includes a variety of carbohydrate and pyrimidine kinases. The family includes phosphomethylpyrimidine kinase (2.7.4.7 from EC). This enzyme is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 1VM7_B 2ABQ_B 3GO7_B 3GO6_B 3FHY_A 4EOH_B 2YXU_A 2F7K_A 3KEU_A 2YXT_B ....
Probab=100.00 E-value=3.5e-33 Score=261.19 Aligned_cols=255 Identities=26% Similarity=0.368 Sum_probs=199.3
Q ss_pred CccEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHHH
Q 017305 81 SIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFL 160 (374)
Q Consensus 81 ~~~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i 160 (374)
|.+|+|+|++++|++..++++ ..+.. . .......+||++.|+|++|++||.++.+++.+|+|.+|+++
T Consensus 1 m~~v~~iG~~~iD~~~~~~~~-~~~~~-~----------~~~~~~~~GG~~~n~a~~l~~LG~~v~~i~~vG~D~~g~~i 68 (301)
T PF00294_consen 1 MKKVLVIGEVNIDIIGYVDRF-KGDLV-R----------VSSVKRSPGGAGANVAIALARLGADVALIGKVGDDFFGEII 68 (301)
T ss_dssp EEEEEEESEEEEEEEEESSSH-TTSEE-E----------ESEEEEEEESHHHHHHHHHHHTTSEEEEEEEEESSHHHHHH
T ss_pred CCcEEEECccceEEEeecCCc-CCcce-e----------cceEEEecCcHHHHHHHHHHhccCcceEEeeccCcchhhhh
Confidence 357999999999999998776 22211 1 12345677999999999999999999999999999999999
Q ss_pred HHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcccHHHHhhccCCcEEEEe
Q 017305 161 LDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCN 240 (374)
Q Consensus 161 ~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~~~ 240 (374)
++.|++.||+++++.+.++. +|+.++++++++|+|.+....... ..+ ...+.....+.++++++++
T Consensus 69 ~~~l~~~gv~~~~i~~~~~~--------~t~~~~~~~~~~g~r~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~ 134 (301)
T PF00294_consen 69 LEELKERGVDTSYIPRDGDE--------PTGRCLIIVDPDGERTFVFSPGAN-----SDL-TPDELDEEAIDEADILHLS 134 (301)
T ss_dssp HHHHHHTTEEETTEEEESSS--------EEEEEEEEEETTSEEEEEEEEGGG-----GGG-GHHHHHHHHHHTESEEEEE
T ss_pred hhcccccccccccccccccc--------ccceeEeeecccccceeeeccccc-----ccc-ccccccccccccccceeec
Confidence 99999999999999876654 489999999988998876543211 111 0111145668899999999
Q ss_pred c-CCCCCCCHHHHHHHHHHHHhcC--CeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCCC--CHH
Q 017305 241 G-YGFDELSPALIISALEYAAQVG--TSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLR--NPI 315 (374)
Q Consensus 241 g-~~~~~~~~~~~~~~~~~a~~~g--~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~~--~~~ 315 (374)
+ +.....+.+.+..+.+.+++.+ .+++.++.+. ..++.+.++++++|++++|++|+..+++.. +.+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~ 205 (301)
T PF00294_consen 135 GVSLPEGIPEDLLEALAKAAKKNGPFDPVFRDPSWD---------DLREDLKELLPYADILKPNEEEAEALTGSKIDDPE 205 (301)
T ss_dssp SGHCSTTSHHHHHHHHHHHHHHTTEEEEEEEGGGSH---------HHHHHHHHHHHTSSEEEEEHHHHHHHHTCSTSSHH
T ss_pred ccccccccccceeeeccccccccccccccccccccc---------ccchhhhhhccccchhccccccccccccccccchh
Confidence 9 4445566677777777777777 3455555421 135677888999999999999999999987 566
Q ss_pred HHHHH---HHHcCCCccEEEEEcCCCceEEEeCCceEEecCc-eeeeecccchhhhhcCCC
Q 017305 316 TAGQE---LLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAF-KVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 316 ~~~~~---l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~-~v~vVDttGagdaf~~G~ 372 (374)
++.+. ++.+|+ +.+|+|+|++|++++++++.++++++ ++++||||||||+|++|+
T Consensus 206 ~~~~~~~~l~~~g~--~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGD~f~A~~ 264 (301)
T PF00294_consen 206 DALAALRELQARGV--KIVIVTLGEDGALYYTNDESYHVPPVPPVNVVDTTGAGDAFAAGF 264 (301)
T ss_dssp HHHHHHHHHHHTTS--SEEEEEEGGGEEEEEETTEEEEEEEESSSSSSSCTTHHHHHHHHH
T ss_pred hhhccccccchhhh--hhhhccccccCcccccccccccccccccccccceeccchhhhHHH
Confidence 55544 445777 88999999999999999999999984 679999999999999875
No 33
>PRK13508 tagatose-6-phosphate kinase; Provisional
Probab=100.00 E-value=2e-32 Score=257.32 Aligned_cols=251 Identities=17% Similarity=0.158 Sum_probs=190.0
Q ss_pred EEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHHHHHH
Q 017305 84 VATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDV 163 (374)
Q Consensus 84 vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~~~ 163 (374)
+.+..++++|.++.+++++..+... +. .....+||++.|+|+++++||.++.++|.+|+ .+|+++++.
T Consensus 3 ~~~t~np~~D~~~~~~~~~~~~~~~----~~-------~~~~~~GG~~~NvA~~la~LG~~~~~~~~vGd-~~G~~i~~~ 70 (309)
T PRK13508 3 LTVTLNPSIDISYPLDELKLDTVNR----VV-------DVSKTAGGKGLNVTRVLSEFGENVLATGLIGG-ELGQFIAEH 70 (309)
T ss_pred EEEecChHHeEEEEeCCeeeCCeEE----ec-------ceeecCCchHHHHHHHHHHcCCCeEEEEEecC-hhHHHHHHH
Confidence 5678999999999999988765321 11 23456799999999999999999999999996 689999999
Q ss_pred HHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcccHHHHhhccCCcEEEEecCC
Q 017305 164 LQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGYG 243 (374)
Q Consensus 164 L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~~~g~~ 243 (374)
|++ ||+++++.. ++ .|+.++++++ +|+++++...+..... +....+...+.+.+.++|++|++|+.
T Consensus 71 l~~-gI~~~~~~~-~~---------~t~~~~~~~~-~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~g~~ 136 (309)
T PRK13508 71 LDD-QIKHAFYKI-KG---------ETRNCIAILH-EGQQTEILEKGPEISV--QEADGFLHHFKQLLESVEVVAISGSL 136 (309)
T ss_pred HHc-CCCceEEEC-CC---------CCeeeEEEEe-CCCEEEEECCCCCCCH--HHHHHHHHHHHHhccCCCEEEEeCCC
Confidence 999 999987654 22 2556666665 6788766443322111 11111222334567899999999986
Q ss_pred CCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCCC---CHH---HH
Q 017305 244 FDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLR---NPI---TA 317 (374)
Q Consensus 244 ~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~~---~~~---~~ 317 (374)
....+.+.+..+++.+++.|+++++|++... ...+...+.++|++++|++|+..++|.+ +.+ +.
T Consensus 137 ~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~----------~~~~~~~~~~~dii~~n~~E~~~l~g~~~~~~~~~~~~~ 206 (309)
T PRK13508 137 PAGLPVDYYAQLIELANQAGKPVVLDCSGAA----------LQAVLESPYKPTVIKPNIEELSQLLGKEVSEDLDELKEV 206 (309)
T ss_pred CCCcCHHHHHHHHHHHHHCCCEEEEECCcHH----------HHHHHhccCCceEEccCHHHHHHHhCCCCCCCHHHHHHH
Confidence 5555567788899999999999999997431 1222334578999999999999999863 332 34
Q ss_pred HHHHHHcCCCccEEEEEcCCCceEEEeCCceEEecCceeeeecccchhhhhcCCC
Q 017305 318 GQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 318 ~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
++.+...|+ +.||||+|++|++++.+++.+++|++++++||||||||+|++|+
T Consensus 207 ~~~~~~~g~--~~vvvT~G~~G~~~~~~~~~~~~~~~~v~vvDttGAGDaF~Agf 259 (309)
T PRK13508 207 LQQPLFEGI--EWIIVSLGADGAFAKHNDTFYKVDIPKIEVVNPVGSGDSTVAGI 259 (309)
T ss_pred HHHHHHcCC--CEEEEecCCCceEEEeCCceEEEeCCCccccCCcChhHHHHHHH
Confidence 445556676 78999999999999988888899999999999999999998875
No 34
>TIGR01231 lacC tagatose-6-phosphate kinase. This enzyme is part of the tagatose-6-phosphate pathway of lactose degradation.
Probab=100.00 E-value=3.7e-32 Score=255.56 Aligned_cols=252 Identities=14% Similarity=0.124 Sum_probs=191.7
Q ss_pred EEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHHHHHH
Q 017305 84 VATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDV 163 (374)
Q Consensus 84 vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~~~ 163 (374)
+.|.=++.+|..+.++++|.++.. ..+ .....+||+++|+|++|++||.++.++|.+|+| +|+++++.
T Consensus 2 ~~~~~~p~~d~~~~~~~~~~~~~~----~~~-------~~~~~~GG~~~NvA~~la~LG~~v~~i~~vG~~-~G~~i~~~ 69 (309)
T TIGR01231 2 LTVTLNPSVDISYPLTALKLDTVN----RVQ-------EVSKTAGGKGLNVTRVLAQVGDPVLASGFLGGK-LGEFIEKE 69 (309)
T ss_pred EEEEcchHHeEEEEcCCeeeCceE----eec-------eeeecCCccHHHHHHHHHHcCCCeEEEEEecCh-hHHHHHHH
Confidence 346668999999999998877643 112 234567999999999999999999999999975 99999999
Q ss_pred HHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcccHHHHhhccCCcEEEEecCC
Q 017305 164 LQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGYG 243 (374)
Q Consensus 164 L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~~~g~~ 243 (374)
|++.||+++++...+. |+.++.+++ +|+++++...+..... .....+.+...+.+.+++++|++|+.
T Consensus 70 l~~~GV~~~~~~~~~~----------t~~~~~~~~-~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~g~~ 136 (309)
T TIGR01231 70 LDHSDIKHAFYKISGE----------TRNCIAILH-EGQQTEILEQGPEISN--QEAAGFLKHFEQLLEKVEVVAISGSL 136 (309)
T ss_pred HHHcCCceeEEECCCC----------CEEeEEEEe-CCCEEEEeCCCCCCCH--HHHHHHHHHHHHHhccCCEEEEECCC
Confidence 9999999998876432 445555554 6888776543322111 11111112334567899999999986
Q ss_pred CCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCCC---CHH---HH
Q 017305 244 FDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLR---NPI---TA 317 (374)
Q Consensus 244 ~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~~---~~~---~~ 317 (374)
....+.+.+.++++.+++.|.++++|+++.. .+.+.+.+.++|++++|++|++.++|.+ +.+ ++
T Consensus 137 ~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~----------~~~~~~~~~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~ 206 (309)
T TIGR01231 137 PKGLPQDYYAQIIERCQNKGVPVVLDCSGAT----------LQTVLENPAKPTVIKPNIEELSQLLNQELTEDLESLKQA 206 (309)
T ss_pred CCCcCHHHHHHHHHHHHhCCCeEEEECChHH----------HHHHHhccCCCeEEcCCHHHHHHHhCCCCCCCHHHHHHH
Confidence 6556678888999999999999999998532 1223445678999999999999999852 333 34
Q ss_pred HHHHHHcCCCccEEEEEcCCCceEEEeCCceEEecCceeeeecccchhhhhcCCC
Q 017305 318 GQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 318 ~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
++.+...|. +.||+|+|++|++++.+++.+++|++++++||||||||+|++|+
T Consensus 207 ~~~~~~~g~--~~vivT~G~~G~~~~~~~~~~~~~~~~v~vvDttGAGDaF~agf 259 (309)
T TIGR01231 207 LSQPLFSGI--EWIIVSLGAQGAFAKHGHTFYKVNIPTISVVNPVGSGDSTVAGI 259 (309)
T ss_pred HHHHHHcCC--CEEEEccCCCceEEEeCCeeEEeeCCccCcCCCcchHHHHHHHH
Confidence 455556676 78999999999999988888899999999999999999998875
No 35
>PRK09513 fruK 1-phosphofructokinase; Provisional
Probab=100.00 E-value=6.8e-32 Score=254.08 Aligned_cols=254 Identities=17% Similarity=0.150 Sum_probs=194.5
Q ss_pred CccEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHHH
Q 017305 81 SIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFL 160 (374)
Q Consensus 81 ~~~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i 160 (374)
++-..|.=++++|+++.++++|. ++... .. ....++||++.|+|+++++||.++.++|.+|+|.+|++
T Consensus 3 ~~~~~~~~~p~~D~~~~~~~~~~-~~~~~---~~-------~~~~~~GG~~~Nva~~la~lG~~~~~i~~vG~D~~~~~- 70 (312)
T PRK09513 3 RRVATITLNPAYDLVGFCPEIER-GEVNL---VK-------TTGLHAAGKGINVAKVLKDLGIDVTVGGFLGKDNQDGF- 70 (312)
T ss_pred ceEEEEecChHHeEEEEcCceec-CCeee---ec-------ceeecCCchHHHHHHHHHHcCCCeEEEEEecCccHHHH-
Confidence 33345778999999999999984 54321 11 34567799999999999999999999999999999987
Q ss_pred HHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcccHHHHhhccCCcEEEEe
Q 017305 161 LDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCN 240 (374)
Q Consensus 161 ~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~~~ 240 (374)
++.|+++||++.++.. ++ .|+.++++++++|+++++........+ .+.+.+.....+.++++|++|++
T Consensus 71 ~~~l~~~gv~~~~~~~-~~---------~t~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~d~v~~~ 138 (312)
T PRK09513 71 QQLFSELGIANRFQVV-QG---------RTRINVKLTEKDGEVTDFNFSGFEVTP--ADWERFVTDSLSWLGQFDMVAVS 138 (312)
T ss_pred HHHHHHcCCCccEEEC-CC---------CCEEEEEEEeCCCcEEEEeCCCCCCCH--HHHHHHHHHHHhhcCCCCEEEEE
Confidence 6889999999876643 33 267778888878887754433221111 11122222234568899999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCCC-----CHH
Q 017305 241 GYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLR-----NPI 315 (374)
Q Consensus 241 g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~~-----~~~ 315 (374)
|+.......+.+.++++.+++.|.++++|++... + ...+....|++++|++|+..++|.. +..
T Consensus 139 g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~--~----------~~~~~~~~~~l~~n~~E~~~l~g~~~~~~~~~~ 206 (312)
T PRK09513 139 GSLPRGVSPEAFTDWMTRLRSQCPCIIFDSSREA--L----------VAGLKAAPWLVKPNRRELEIWAGRKLPELKDVI 206 (312)
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCEEEEECChHH--H----------HHHhccCCeEEcCCHHHHHHHhCCCCCCHHHHH
Confidence 9876666678888999999999999999998431 1 1234557899999999999999863 344
Q ss_pred HHHHHHHHcCCCccEEEEEcCCCceEEEeCCceEEecCceeeeecccchhhhhcCCC
Q 017305 316 TAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 316 ~~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
++++.+.+.|+ +.||||+|++|++++.+++.+++++++++++||||+||+|.+|+
T Consensus 207 ~~~~~l~~~g~--~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~vDttGAGDaf~ag~ 261 (312)
T PRK09513 207 EAAHALREQGI--AHVVISLGAEGALWVNASGEWIAKPPACDVVSTVGAGDSMVGGL 261 (312)
T ss_pred HHHHHHHHcCC--CEEEEEeCCCCcEEEeCCceEEecCCCccccCCCChHHHHHHHH
Confidence 57777888877 78999999999999888777888888899999999999998875
No 36
>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family. This family consists largely of 1-phosphofructokinases, but also includes tagatose-6-kinases and 6-phosphofructokinases.
Probab=100.00 E-value=9.6e-32 Score=252.05 Aligned_cols=249 Identities=22% Similarity=0.262 Sum_probs=191.7
Q ss_pred EECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHHHHHHHH
Q 017305 86 TLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQ 165 (374)
Q Consensus 86 viG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~~~L~ 165 (374)
|-=++.+|+++.++++ ..++... .+ .....+||++.|+|++++|||.++.++|.+|+| +|+.+++.|+
T Consensus 4 ~~~~~~~D~~~~~~~~-~~~~~~~---~~-------~~~~~~GG~~~N~a~~l~~lg~~~~~i~~vG~D-~g~~i~~~l~ 71 (303)
T TIGR03168 4 VTLNPAIDLTIEVDGL-TPGEVNR---VA-------AVRKDAGGKGINVARVLARLGAEVVATGFLGGF-TGEFIEALLA 71 (303)
T ss_pred EEcchHHeEEEEcCcc-ccCceee---cC-------cccccCCcchhhHHHHHHHcCCCeEEEEEeCCc-hhHHHHHHHH
Confidence 4446789999999996 4444321 11 334567999999999999999999999999998 7999999999
Q ss_pred hcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcccHHHHhhccCCcEEEEecCCCC
Q 017305 166 DEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGYGFD 245 (374)
Q Consensus 166 ~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~~~g~~~~ 245 (374)
+.||+++++..... |+.++++++++|++..+...+.... ...++.+.+.+.+.+++++++|++++...
T Consensus 72 ~~gI~~~~i~~~~~----------t~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~i~~~~~~ 139 (303)
T TIGR03168 72 EEGIKNDFVEVKGE----------TRINVKIKESSGEETELNEPGPEIS--EEELEQLLEKLRELLASGDIVVISGSLPP 139 (303)
T ss_pred HcCCCceEEECCCC----------CEEeEEEEeCCCCEEEEeCcCCCCC--HHHHHHHHHHHHHhccCCCEEEEeCCCCC
Confidence 99999999876421 5566777777787765443322111 11122222233355889999999987655
Q ss_pred CCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCCC-----CHHHHHHH
Q 017305 246 ELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLR-----NPITAGQE 320 (374)
Q Consensus 246 ~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~~-----~~~~~~~~ 320 (374)
..+.+.+..+++.++++|.++++|++... + + ..+..++|++++|++|+..++|.. +.+++++.
T Consensus 140 ~~~~~~~~~~~~~~~~~g~~v~~D~~~~~--~-------~---~~~~~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~~~ 207 (303)
T TIGR03168 140 GVPPDFYAQLIAIARKRGAKVILDTSGEA--L-------R---EALAAKPFLIKPNHEELEELFGRELKTEEEIIEAARE 207 (303)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEECCcHH--H-------H---HHHhcCCcEECCCHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 66778888999999999999999997531 1 1 234457999999999999999863 35577788
Q ss_pred HHHcCCCccEEEEEcCCCceEEEeCCceEEecCceeeeecccchhhhhcCCC
Q 017305 321 LLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 321 l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
+.++|+ +.+|||+|++|++++++++.+++|+++++++||||+||+|.+|+
T Consensus 208 l~~~g~--~~vviT~g~~G~~~~~~~~~~~~~~~~~~~vDttGAGD~F~a~~ 257 (303)
T TIGR03168 208 LLDRGA--ENVLVSLGADGALLVTKEGALKATPPKVEVVNTVGAGDSMVAGF 257 (303)
T ss_pred HHHcCC--CEEEEeecCCCcEEEeCCceEEeeCCcceeecCcCHHHHHHHHH
Confidence 888876 78999999999999998888899999999999999999998775
No 37
>PRK10294 6-phosphofructokinase 2; Provisional
Probab=99.98 E-value=5.4e-31 Score=247.64 Aligned_cols=253 Identities=19% Similarity=0.160 Sum_probs=193.3
Q ss_pred cEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHHHHH
Q 017305 83 DVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLD 162 (374)
Q Consensus 83 ~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~~ 162 (374)
-+.+.=++.+|.++.+++++. |+..+ .+ .....+||+++|+|+++++||.++.+++.+|+ .+|+++++
T Consensus 4 i~~~~~~p~~d~~~~~~~~~~-~~~~~---~~-------~~~~~~GG~~~NvA~~l~~lG~~~~~i~~vG~-~~g~~i~~ 71 (309)
T PRK10294 4 IYTLTLAPSLDSATITPQIYP-EGKLR---CS-------APVFEPGGGGINVARAIAHLGGSATAIFPAGG-ATGEHLVS 71 (309)
T ss_pred EEEEecChHHeEEEEeCceee-CCeEE---ec-------cceecCCccHHHHHHHHHHcCCCeEEEEEecC-ccHHHHHH
Confidence 356668999999999999874 43322 11 23456799999999999999999999999997 69999999
Q ss_pred HHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcccHHHHhhccCCcEEEEecC
Q 017305 163 VLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGY 242 (374)
Q Consensus 163 ~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~~~g~ 242 (374)
.|++.||+++++...+.. +..+++.++++|++.++...+.... .+.++.+.+. .+.+++++++|++|+
T Consensus 72 ~l~~~gv~~~~~~~~~~~---------~~~~~i~~~~~g~~~~~~~~~~~~~--~~~~~~l~~~-~~~~~~~~~~~i~g~ 139 (309)
T PRK10294 72 LLADENVPVATVEAKDWT---------RQNLHVHVEASGEQYRFVMPGAALN--EDEFRQLEEQ-VLEIESGAILVISGS 139 (309)
T ss_pred HHHHcCCCceEEECCCCC---------eeeEEEEEcCCCcEEEEECCCCCCC--HHHHHHHHHH-HHhcCCCCEEEEeCC
Confidence 999999999998765432 3345566777888776554332211 1122222222 223678999999998
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCCC-----CHHHH
Q 017305 243 GFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLR-----NPITA 317 (374)
Q Consensus 243 ~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~~-----~~~~~ 317 (374)
.....+.+.+.++++.+++.|.++++|++... .+. ...++++|++++|++|+..|+|.. +.+++
T Consensus 140 ~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~---------~~~--~~~~~~~~~i~~n~~E~~~l~g~~~~~~~~~~~a 208 (309)
T PRK10294 140 LPPGVKLEKLTQLISAAQKQGIRCIIDSSGDA---------LSA--ALAIGNIELVKPNQKELSALVNRDLTQPDDVRKA 208 (309)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCeEEEeCCCHH---------HHH--HHhcCCCeEECCCHHHHHHHhCCCCCCHHHHHHH
Confidence 76666778899999999999999999987421 111 112568999999999999999863 34577
Q ss_pred HHHHHHcC-CCccEEEEEcCCCceEEEeCCceEEecCceeeeecccchhhhhcCCC
Q 017305 318 GQELLRKG-LRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 318 ~~~l~~~g-~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
++.+++.+ + +.+|||+|++|++++++++.++++++++++||||||||+|.+|+
T Consensus 209 ~~~l~~~~~~--~~vvvT~G~~G~~~~~~~~~~~~~~~~v~vvDttGAGDaf~ag~ 262 (309)
T PRK10294 209 AQELVNSGKA--KRVVVSLGPQGALGVDSENCIQVVPPPVKSQSTVGAGDSMVGAM 262 (309)
T ss_pred HHHHHHcCCC--CEEEEecCCCceEEEcCCccEEEeCCCcccCCCcchHHHHHHHH
Confidence 78888876 4 78999999999999988888889999999999999999998875
No 38
>PRK09813 fructoselysine 6-kinase; Provisional
Probab=99.98 E-value=5.9e-31 Score=241.36 Aligned_cols=228 Identities=18% Similarity=0.203 Sum_probs=177.0
Q ss_pred ccEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHHHH
Q 017305 82 IDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLL 161 (374)
Q Consensus 82 ~~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~ 161 (374)
++|+++|++++|++... ++ ..+||++.|+|.++++||.++.++|.+|+|.+|++++
T Consensus 1 ~~v~~iG~~~~D~~~~~------~~------------------~~~GG~~~NvA~~l~~lG~~~~~is~vG~D~~g~~i~ 56 (260)
T PRK09813 1 KKLATIGDNCVDIYPQL------GK------------------AFSGGNAVNVAVYCTRYGIQPGCITWVGDDDYGTKLK 56 (260)
T ss_pred CeEEEeccceeeecccC------Cc------------------cccCccHHHHHHHHHHcCCcceEEEEecCcHHHHHHH
Confidence 47999999999998542 11 2459999999999999999999999999999999999
Q ss_pred HHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccC-CCCCCchhhhhhcccHHHHhhccCCcEEEEe
Q 017305 162 DVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRA-DFSKEPAFSWMNKLSAEVKTAIKHSKVLFCN 240 (374)
Q Consensus 162 ~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~-~~~~~~~~~~~~~l~~~~~~~l~~~~~v~~~ 240 (374)
+.|+++||+++++.+.++ +|+.+++.++ +|+|.+.... +..... .+.+...+.+.+++++|++
T Consensus 57 ~~l~~~gI~~~~~~~~~~---------~t~~~~~~~~-~~~r~~~~~~~~~~~~~------~~~~~~~~~l~~~~~v~~~ 120 (260)
T PRK09813 57 QDLARMGVDISHVHTKHG---------VTAQTQVELH-DNDRVFGDYTEGVMADF------ALSEEDYAWLAQYDIVHAA 120 (260)
T ss_pred HHHHHcCCcchheeeecC---------CCceEEEEEe-CCcEEeeccCCCccccc------ccCHHHHHHHHhCCEEEEe
Confidence 999999999999977554 2667777775 5787765332 111111 1222233457889999997
Q ss_pred cCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCCCCHHHHHHH
Q 017305 241 GYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRNPITAGQE 320 (374)
Q Consensus 241 g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~~~~~~~~~~ 320 (374)
.+. ...++++.++++|.++++|++.+.. .+.+.++++++|+++.|+++.. .+.+++++.
T Consensus 121 ~~~-------~~~~~~~~~~~~~~~v~~D~~~~~~---------~~~~~~~~~~~d~~~~~~~~~~-----~~~~~~~~~ 179 (260)
T PRK09813 121 IWG-------HAEDAFPQLHAAGKLTAFDFSDKWD---------SPLWQTLVPHLDYAFASAPQED-----EFLRLKMKA 179 (260)
T ss_pred ccc-------hHHHHHHHHHHcCCeEEEEcCCCcc---------HHHHHHhCCceeEEEecCCcch-----HHHHHHHHH
Confidence 431 2346677788899999999986521 1335678999999999866421 235677888
Q ss_pred HHHcCCCccEEEEEcCCCceEEEeCCceEEecCceeeeecccchhhhhcCCC
Q 017305 321 LLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 321 l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
+.+.|+ +.+|||+|++|++++.+++.+++|++++++||||||||+|++|+
T Consensus 180 ~~~~g~--~~viit~G~~Ga~~~~~~~~~~~~~~~~~~vDttGAGDaF~ag~ 229 (260)
T PRK09813 180 IVARGA--GVVIVTLGENGSIAWDGAQFWRQAPEPVTVVDTMGAGDSFIAGF 229 (260)
T ss_pred HHHcCC--CEEEEEECCCceEEEECCEEEecCCcccCCCCCCCchHHHHHHH
Confidence 888877 78999999999999998889999999999999999999998775
No 39
>PLN02548 adenosine kinase
Probab=99.97 E-value=1.6e-30 Score=246.79 Aligned_cols=233 Identities=15% Similarity=0.175 Sum_probs=172.1
Q ss_pred CCccccCCcHHHHHHHH---HHcCCCeEEEEEecCchhHHHHHHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEEC
Q 017305 122 DKQYWEAGGNCNVAIAA---ARLGLDCVTIGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVD 198 (374)
Q Consensus 122 ~~~~~~GG~a~NvA~~l---arLG~~~~~v~~vG~D~~G~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~ 198 (374)
.....+||++.|+|..+ +++|.++.|+|.+|+|.+|+++++.|+++||+++++.. ++. +|+.++++++
T Consensus 46 ~~~~~~GG~~~Nva~~a~~l~~lg~~~~~ig~vG~D~~g~~i~~~L~~~gVd~~~~~~-~~~--------~T~~~~i~~~ 116 (332)
T PLN02548 46 NVEYIAGGATQNSIRVAQWMLQIPGATSYMGCIGKDKFGEEMKKCATAAGVNVHYYED-EST--------PTGTCAVLVV 116 (332)
T ss_pred CceecCCcHHHHHHHHHHHHhcCCCcEEEEEEEcCChhHHHHHHHHHHcCCceeeecc-CCC--------CCceEEEEEe
Confidence 45567899999986544 56799999999999999999999999999999998753 333 4888888886
Q ss_pred CCCCccccccCCCCCCchhhhhhcccHHHHhhccCCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCC
Q 017305 199 PSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLS 278 (374)
Q Consensus 199 ~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~ 278 (374)
+|+|+++...+.......+.+. .....+.+.+++++|++|+.+ ..+.+.+..+++.++++|.++.+|++.. +|
T Consensus 117 -~g~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~g~~~-~~~~~~~~~~~~~a~~~g~~~~~~~~~~---~~ 189 (332)
T PLN02548 117 -GGERSLVANLSAANCYKVEHLK--KPENWALVEKAKFYYIAGFFL-TVSPESIMLVAEHAAANNKTFMMNLSAP---FI 189 (332)
T ss_pred -cCCceeeeccchhhcCCHHHhc--ChhhHhHHhhCCEEEEEEEEc-cCCHHHHHHHHHHHHHcCCEEEEECCCh---hH
Confidence 7888875432211110111111 011234567899999998764 3567888889999999999888887643 22
Q ss_pred CCChHHHHHHHhhhccCcEEecCHHHHHHhhCC-----CCHHHHHHHHHHc----CCCccEEEEEcCCCceEEEeCCceE
Q 017305 279 SGTPEEQRALSYFLSTSDVLLLTSDEAESLTGL-----RNPITAGQELLRK----GLRTKWVVVKMGPRGSILVTKSSIS 349 (374)
Q Consensus 279 ~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~-----~~~~~~~~~l~~~----g~~~~~vvvT~G~~Ga~~~~~~~~~ 349 (374)
. ...++.+.++++++|++++|++|+..++|. ++.+++++.+.+. +.+.+.+|||+|++|++++.+++.+
T Consensus 190 ~--~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~~~~~~g~~~~~vvvT~G~~G~~~~~~~~~~ 267 (332)
T PLN02548 190 C--EFFKDQLMEALPYVDFLFGNETEARTFAKVQGWETEDVEEIALKISALPKASGTHKRTVVITQGADPTVVAEDGKVK 267 (332)
T ss_pred H--HHhHHHHHHHHhhCCEEEecHHHHHHHhCccCCCcccHHHHHHHHHHhhhhccccCCEEEEEeCCCcEEEEECCeEE
Confidence 1 123456788999999999999999999874 3455665555432 2223789999999999999888888
Q ss_pred EecCc---eeeeecccchhhhhcCCC
Q 017305 350 CAPAF---KVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 350 ~~pa~---~v~vVDttGagdaf~~G~ 372 (374)
++|++ ++++||||||||+|++|+
T Consensus 268 ~~pa~~~~~~~vvDttGAGDaF~ag~ 293 (332)
T PLN02548 268 EFPVIPLPKEKLVDTNGAGDAFVGGF 293 (332)
T ss_pred EeccccCCcCccccCCCchHHHHHHH
Confidence 88864 347999999999999875
No 40
>cd01943 MAK32 MAK32 kinase. MAK32 is a protein found primarily in fungi that is necessary for the structural stability of L-A particles. The L-A virus particule is a specialized compartment for the transcription and replication of double-stranded RNA, known to infect yeast and other fungi. MAK32 is part of the host machinery used by the virus to multiply.
Probab=99.97 E-value=7.4e-31 Score=248.15 Aligned_cols=245 Identities=18% Similarity=0.135 Sum_probs=181.9
Q ss_pred cEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHc-CC--Ce--EEEEEecCchhH
Q 017305 83 DVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARL-GL--DC--VTIGHVGNEIYG 157 (374)
Q Consensus 83 ~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larL-G~--~~--~~v~~vG~D~~G 157 (374)
+++++|++.+|++...+. . .....+||+++|+|+++++| |. ++ .+++.+|+| +|
T Consensus 1 ~~~~~G~~~~d~i~~~~~-----~---------------~~~~~~GG~~~N~A~~~~~l~g~~~~~~~~~~~~vG~D-~G 59 (328)
T cd01943 1 DFTTLGMFIIDEIEYPDS-----E---------------PVTNVLGGAGTYAILGARLFLPPPLSRSISWIVDKGSD-FP 59 (328)
T ss_pred CccccCcEEeeccccCCC-----C---------------ccccccCCchhhHhhceeeecCCccccceeeEEecCCC-CC
Confidence 589999999999965321 1 12345699999999999999 44 67 889999999 99
Q ss_pred HHHHHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcccHHHHhhccCCcEE
Q 017305 158 RFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVL 237 (374)
Q Consensus 158 ~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v 237 (374)
+++++.|+++||++++ .+.++. +|+.++++++++|+|.++++......... +.+. ...+..++++
T Consensus 60 ~~l~~~L~~~GVd~~~-~~~~~~--------~Tg~~~v~~~~~g~r~~~~~~~~~~~~~~---~~l~---~~~~~~a~~~ 124 (328)
T cd01943 60 KSVEDELESWGTGMVF-RRDPGR--------LTTRGLNIYDGNDRRFFKYLTPKKRIDVS---DDLN---STPLIRSSCI 124 (328)
T ss_pred HHHHHHHHhcCCceEE-EeCCCC--------cchhhhhhcCCCCcceeeecCcccccccc---cccc---cccccCCCeE
Confidence 9999999999999988 555544 48888888888888887654332111100 1111 2346789999
Q ss_pred EEecCCCCCCCHHHHHHHHHHHHh------cCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCC
Q 017305 238 FCNGYGFDELSPALIISALEYAAQ------VGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGL 311 (374)
Q Consensus 238 ~~~g~~~~~~~~~~~~~~~~~a~~------~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~ 311 (374)
|+++... ...+...++++.+++ .+..+++|+++... .+..++.+.++++++|++++|++|++.++|.
T Consensus 125 hl~~~~~--~~~~~~~~~~~~a~~~~~d~~~g~~~~~d~~~~~~-----~~~~~~~l~~~l~~~dil~~n~~Ea~~l~g~ 197 (328)
T cd01943 125 HLICSPE--RCASIVDDIINLFKLLKGNSPTRPKIVWEPLPDSC-----DPENLEDLLQALPRVDVFSPNLEEAARLLGL 197 (328)
T ss_pred EEECCHH--HHHHHHHHHHHHHHhhccccCCccEEEEecCCccc-----ChhhHHHHHHHhccCCEECCCHHHHHHHhCC
Confidence 9986431 112677888888888 78889999885421 1113456789999999999999999999986
Q ss_pred CC-----HHHHH-----HH---HHHcCCCccEEEEEcCCCceEEEe--CCceEEecCcee---eeecccchhhhhcCCC
Q 017305 312 RN-----PITAG-----QE---LLRKGLRTKWVVVKMGPRGSILVT--KSSISCAPAFKV---LQLQWVVVLVGMWQPW 372 (374)
Q Consensus 312 ~~-----~~~~~-----~~---l~~~g~~~~~vvvT~G~~Ga~~~~--~~~~~~~pa~~v---~vVDttGagdaf~~G~ 372 (374)
.+ .++.. .. +...+. +.||||+|++|++++. +++.+++|++++ ++||||||||+|++|+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~vvvt~G~~Ga~~~~~~~~~~~~~p~~~v~~~~vvDttGAGDaF~agf 274 (328)
T cd01943 198 PTSEPSSDEEKEAVLQALLFSGILQDPG--GGVVLRCGKLGCYVGSADSGPELWLPAYHTKSTKVVDPTGGGNSFLGGF 274 (328)
T ss_pred CCCCccchhhhhhhHHHHHHHhhhccCC--CEEEEEeCCCCCEEEecCCCceEecCCccCCCCcccCCCCchHHHHHHH
Confidence 53 11111 11 234455 7899999999999988 456889999988 9999999999999875
No 41
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=99.97 E-value=3.9e-30 Score=255.39 Aligned_cols=256 Identities=17% Similarity=0.155 Sum_probs=183.5
Q ss_pred ccCCCCccEEEECCeeEEEeecC--CCCCC--CchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEe
Q 017305 76 SSGVKSIDVATLGNLCVDIVLNV--PQLPP--PSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHV 151 (374)
Q Consensus 76 ~~~~~~~~vlviG~~~~D~i~~~--~~~p~--~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~v 151 (374)
...|...+|+|+|++++|+++.+ ++++. +...+ ..+ .....+|| ++|+|++|++||.++.++|.+
T Consensus 5 ~~~~~~~~ilviG~~~lD~~~~~~~~~~~~~~~~~~~---~~~-------~~~~~~GG-a~NvA~~la~LG~~v~~i~~v 73 (473)
T PRK11316 5 LPDFERAGVLVVGDVMLDRYWYGPTSRISPEAPVPVV---KVN-------QIEERPGG-AANVAMNIASLGAQARLVGLT 73 (473)
T ss_pred HHhhCCCcEEEECccEEeeeeecccceeCCCCCCCEE---Eee-------eEEecCcH-HHHHHHHHHHcCCcEEEEEEE
Confidence 34456778999999999999874 34321 11111 111 23344677 799999999999999999999
Q ss_pred cCchhHHHHHHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcccHHHHhhc
Q 017305 152 GNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAI 231 (374)
Q Consensus 152 G~D~~G~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~l 231 (374)
|+|.+|+++++.|++.||+++++.+ ++. +|+.++++++.+++.... +..........+.+.+...+.+
T Consensus 74 G~D~~g~~i~~~L~~~gI~~~~v~~-~~~--------~T~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~l 141 (473)
T PRK11316 74 GIDEAARALSKLLAAVGVKCDFVSV-PTH--------PTITKLRVLSRNQQLIRL---DFEEGFEGVDPQPLLERIEQAL 141 (473)
T ss_pred cCCHHHHHHHHHHHHcCCceeEEEc-CCC--------CCCeeEEEEeCCceEEec---ccccCCCchhHHHHHHHHHHHh
Confidence 9999999999999999999998865 333 377777777654432221 1110000000111222334568
Q ss_pred cCCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCC
Q 017305 232 KHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGL 311 (374)
Q Consensus 232 ~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~ 311 (374)
.+++++|++++.... .+.+..+++.+++.|.++++|+++.. ...++.+|++++|++|++.++|.
T Consensus 142 ~~~~~v~is~~~~~~--~~~~~~~~~~~k~~g~~vv~Dp~~~~--------------~~~~~~~dil~pN~~Ea~~l~g~ 205 (473)
T PRK11316 142 PSIGALVLSDYAKGA--LASVQAMIQLARKAGVPVLIDPKGTD--------------FERYRGATLLTPNLSEFEAVVGK 205 (473)
T ss_pred ccCCEEEEecCCccc--hhHHHHHHHHHHhcCCeEEEeCCCCC--------------ccccCCCeEECcCHHHHHHHhCC
Confidence 899999998764321 25677888999999999999998642 13457899999999999999985
Q ss_pred C-CH---HHHHHHHH-HcCCCccEEEEEcCCCceEEEeCCc-eEEecCceeeeecccchhhhhcCCC
Q 017305 312 R-NP---ITAGQELL-RKGLRTKWVVVKMGPRGSILVTKSS-ISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 312 ~-~~---~~~~~~l~-~~g~~~~~vvvT~G~~Ga~~~~~~~-~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
. +. .+.+++++ +.|+ +.++||+|++|++++++++ .+++|+++++++||+||||+|.+|+
T Consensus 206 ~~~~~~~~~~~~~l~~~~g~--~~vvVT~G~~G~~~~~~~~~~~~~~~~~v~vvDttGAGDaF~aa~ 270 (473)
T PRK11316 206 CKDEAELVEKGMKLIADYDL--SALLVTRSEQGMTLLQPGKAPLHLPTQAREVYDVTGAGDTVISVL 270 (473)
T ss_pred CCCHHHHHHHHHHHHHhcCC--CEEEEEecCCCcEEEecCCceEEecCcCCCCCCCCCCcHHHHHHH
Confidence 2 32 23455554 5565 7899999999999888765 5889999999999999999998775
No 42
>cd01946 ribokinase_group_C Ribokinase-like subgroup C. Found only in bacteria, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.97 E-value=2e-29 Score=233.38 Aligned_cols=236 Identities=19% Similarity=0.263 Sum_probs=176.6
Q ss_pred EEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHHHHHH
Q 017305 84 VATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDV 163 (374)
Q Consensus 84 vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~~~ 163 (374)
|+|+|++++|++.. +. + .....+||++.|+|.+++||| ++.++|.+|+| +|++++++
T Consensus 2 v~~~G~~~~D~~~~----~~-~----------------~~~~~~GG~a~N~a~~la~lg-~v~~i~~vG~D-~g~~~~~~ 58 (277)
T cd01946 2 LLVVGSVAFDAIET----PF-G----------------KVDKALGGSATYFSLSASYFT-DVRLVGVVGED-FPEEDYKL 58 (277)
T ss_pred eEEEEEeeeeeecC----CC-c----------------eeeeccCchHHHHHHHHHHhc-cceeEEeccCc-ChHHHHHH
Confidence 89999999999921 11 0 011245999999999999998 69999999999 89999999
Q ss_pred HHhcCCcccceeeCCCCCcccCCCccceeEEEE--ECCCCCccccccCCCCCCchhhhhhcccHHHHhhccCCcEEEEec
Q 017305 164 LQDEGIGMVGMSEDTDGVDTSSASYETLLCWVL--VDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNG 241 (374)
Q Consensus 164 L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~--~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~~~g 241 (374)
|+++||+++++.+.++.. |...... .+.++++...... .....+.+.+.+.+++++++|+++
T Consensus 59 l~~~gi~~~~v~~~~~~~--------t~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~v~~~~ 122 (277)
T cd01946 59 LNSHNIVTLGLLSKEDGK--------TFHWAGRYHYDLNEADTLDTDL--------NVFADFDPQLPEHYKDSEFVFLGN 122 (277)
T ss_pred HHhccCcceeEEEecCCC--------eEEEeeEehhhcccccchhhhh--------hHHhhcCCCChHHhhcCCEEEECC
Confidence 999999999998765432 3111000 0011222221110 001112222234578899999974
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCCCCHHHHHHHH
Q 017305 242 YGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRNPITAGQEL 321 (374)
Q Consensus 242 ~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~~~~~~~~~~l 321 (374)
++++...++++.+++. .++++|+.. +|. ....+.+.++++++|++++|++|++.++|..+.+++++.+
T Consensus 123 -----~~~~~~~~~~~~~~~~-~~v~~D~~~----~~~--~~~~~~~~~~l~~~d~~~~n~~E~~~l~g~~~~~~~~~~l 190 (277)
T cd01946 123 -----IAPELQREVLEQVKDP-KLVVMDTMN----FWI--SIKPEKLKKVLAKVDVVIINDGEARQLTGAANLVKAARLI 190 (277)
T ss_pred -----CCHHHHHHHHHHHHhC-CEEEEccHH----Hhh--hhhHHHHHHHhccCCEEeCCHHHHHHHhCCchHHHHHHHH
Confidence 3567778888888877 889999842 332 1234567889999999999999999999988888899999
Q ss_pred HHcCCCccEEEEEcCCCceEEEeCCceEEecCceee-eecccchhhhhcCCC
Q 017305 322 LRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVL-QLQWVVVLVGMWQPW 372 (374)
Q Consensus 322 ~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~-vVDttGagdaf~~G~ 372 (374)
.++|+ +.||+|+|.+|++++.+++.+++|+++++ ++||||+||+|.+|+
T Consensus 191 ~~~g~--~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~vDttGAGDaF~Agf 240 (277)
T cd01946 191 LAMGP--KALIIKRGEYGALLFTDDGYFAAPAYPLESVFDPTGAGDTFAGGF 240 (277)
T ss_pred HHcCC--CEEEEecCCCcEEEEECCceEEcCCcccCccCCCCCchHHHHHHH
Confidence 99887 78999999999999988888899999885 899999999998875
No 43
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=99.97 E-value=5.7e-29 Score=226.17 Aligned_cols=250 Identities=21% Similarity=0.242 Sum_probs=200.9
Q ss_pred EEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHHHHHH
Q 017305 84 VATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDV 163 (374)
Q Consensus 84 vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~~~ 163 (374)
+.+.=++.+|..+.++++-... ..+ .. .....+||++.|||..|+.||.++...|.+|.+ .|+++.+.
T Consensus 3 ~TvTLNPaiD~~~~l~~l~~g~-vNr---~~-------~~~~~aGGKGINVa~vL~~lG~~~~a~GflGg~-tg~~~~~~ 70 (310)
T COG1105 3 YTVTLNPALDYTVFLDELELGE-VNR---VR-------AVTKTAGGKGINVARVLKDLGIPVTALGFLGGF-TGEFFVAL 70 (310)
T ss_pred EEEecChhHhheeecccccccc-eee---ec-------cceecCCCCceeHHHHHHHcCCCceEEEecCCc-cHHHHHHH
Confidence 3455688999999987765422 111 11 345678999999999999999999999999998 99999999
Q ss_pred HHhcCCcccceeeCCCCCcccCCCccceeEEEEECC-CCCccccccCCCCCCchhhhhhcccHHHHhhccCCcEEEEecC
Q 017305 164 LQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDP-SQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGY 242 (374)
Q Consensus 164 L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~-~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~~~g~ 242 (374)
|++.||...++.+..+ |..++-+.+. +|..+-+...+.... ...++.+.+.+...+++.|+|.++|+
T Consensus 71 l~~~gi~~~fv~v~g~----------TRinvki~~~~~~~~Tein~~Gp~is--~~~~~~~l~~~~~~l~~~d~VvlsGS 138 (310)
T COG1105 71 LKDEGIPDAFVEVKGD----------TRINVKILDEEDGEETEINFPGPEIS--EAELEQFLEQLKALLESDDIVVLSGS 138 (310)
T ss_pred HHhcCCCceEEEccCC----------CeeeEEEEecCCCcEEEecCCCCCCC--HHHHHHHHHHHHHhcccCCEEEEeCC
Confidence 9999999999887654 6677777776 443444333332222 22334444555666889999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhh-ccCcEEecCHHHHHHhhCCC-----CHHH
Q 017305 243 GFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFL-STSDVLLLTSDEAESLTGLR-----NPIT 316 (374)
Q Consensus 243 ~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll-~~~Dil~~N~~Ea~~l~g~~-----~~~~ 316 (374)
.+..++.+.+.++++.+++.|+++++|.++.. +.+.+ ...++++||.+|++.++|.+ |..+
T Consensus 139 lP~g~~~d~y~~li~~~~~~g~~vilD~Sg~~-------------L~~~L~~~P~lIKPN~~EL~~~~g~~~~~~~d~i~ 205 (310)
T COG1105 139 LPPGVPPDAYAELIRILRQQGAKVILDTSGEA-------------LLAALEAKPWLIKPNREELEALFGRELTTLEDVIK 205 (310)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCeEEEECChHH-------------HHHHHccCCcEEecCHHHHHHHhCCCCCChHHHHH
Confidence 99999999999999999999999999998542 23333 35899999999999999974 5677
Q ss_pred HHHHHHHcCCCccEEEEEcCCCceEEEeCCceEEecCceeeeecccchhhhhcCCC
Q 017305 317 AGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 317 ~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
+++.++.+|+ ++|||++|++|+++.++++.+++.++++++++|+||||++++|+
T Consensus 206 ~a~~l~~~g~--~~ViVSlG~~Gal~~~~~~~~~a~~p~~~vvstVGAGDs~VAGf 259 (310)
T COG1105 206 AARELLAEGI--ENVIVSLGADGALLVTAEGVYFASPPKVQVVSTVGAGDSMVAGF 259 (310)
T ss_pred HHHHHHHCCC--CEEEEEecCcccEEEccCCeEEEeCCCcceecCcCchHHHHHHH
Confidence 8888999988 89999999999999999999999988899999999999999886
No 44
>cd01937 ribokinase_group_D Ribokinase-like subgroup D. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.96 E-value=9.1e-29 Score=226.03 Aligned_cols=228 Identities=17% Similarity=0.155 Sum_probs=168.8
Q ss_pred cEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHHHHH
Q 017305 83 DVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLD 162 (374)
Q Consensus 83 ~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~~ 162 (374)
+|+++|++++|++... ++ ....+||+++|+|+++++||.++.++|.+|+|.+|+ ++
T Consensus 1 ~il~iG~~~iD~~~~~------~~----------------~~~~~GG~~~Nva~~la~lG~~~~~i~~vG~D~~g~--~~ 56 (254)
T cd01937 1 KIVIIGHVTIDEIVTN------GS----------------GVVKPGGPATYASLTLSRLGLTVKLVTKVGRDYPDK--WS 56 (254)
T ss_pred CeEEEcceeEEEEecC------Cc----------------eEEecCchhhhHHHHHHHhCCCeEEEEeeCCCchHH--HH
Confidence 5899999999999752 11 123569999999999999999999999999999998 68
Q ss_pred HHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcccHHHHhhccCCcEEEEecC
Q 017305 163 VLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGY 242 (374)
Q Consensus 163 ~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~~~g~ 242 (374)
.|++.||++..+ ... .|+.+++.++.+|++.+....+.. .+ . . .. ...+.+++++|++++
T Consensus 57 ~l~~~gv~~~~~--~~~---------~t~~~~~~~~~~~~~~~~~~~~~~-~~---~-~---~~-~~~~~~~~~~~~~~~ 116 (254)
T cd01937 57 DLFDNGIEVISL--LST---------ETTTFELNYTNEGRTRTLLAKCAA-IP---D-T---ES-PLSTITAEIVILGPV 116 (254)
T ss_pred HHHHCCcEEEEe--cCC---------CeEEEEEEecCCCCeeeeeccccC-Cc---c-c---cc-ccccCcccEEEECCC
Confidence 899999996533 222 245555666666777665432211 10 0 0 11 124678999999754
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCCCCHHHHHHHHH
Q 017305 243 GFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRNPITAGQELL 322 (374)
Q Consensus 243 ~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~~~~~~~~~~l~ 322 (374)
+.+....+.+.+ .+|++|++.... .|.. .+..+.++++++|++++|++|+..+ .+.+++++.+.
T Consensus 117 -----~~~~~~~~~~~~----~~v~~D~~~~~~-~~~~---~~~~~~~~l~~~di~~~n~~E~~~~---~~~~~~~~~l~ 180 (254)
T cd01937 117 -----PEEISPSLFRKF----AFISLDAQGFLR-RANQ---EKLIKCVILKLHDVLKLSRVEAEVI---STPTELARLIK 180 (254)
T ss_pred -----cchhcHHHHhhh----hheeEcccccee-eccc---cchHHHhhcccCcEEEEcHHHHhhc---CCHHHHHHHHH
Confidence 333333343322 689999986421 1111 1223578999999999999999883 56788888888
Q ss_pred HcCCCccEEEEEcCCCceEEEeCCceEEecCceeeeecccchhhhhcCCC
Q 017305 323 RKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 323 ~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
++|+ +.+|||+|++|++++++++.+++|+++++++||||+||+|++|+
T Consensus 181 ~~g~--~~vvvt~g~~g~~~~~~~~~~~~~~~~~~~vdt~GAGD~f~a~~ 228 (254)
T cd01937 181 ETGV--KEIIVTDGEEGGYIFDGNGKYTIPASKKDVVDPTGAGDVFLAAF 228 (254)
T ss_pred HcCC--CEEEEeeCCcceEEEECCccEEccccCceeccCCCchHHHHHHH
Confidence 8877 78999999999999998888899999999999999999998875
No 45
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=99.95 E-value=4.6e-27 Score=210.92 Aligned_cols=269 Identities=19% Similarity=0.229 Sum_probs=197.0
Q ss_pred cEEEECCeeEEEeecCCC-----CCCC-------chhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCC---CeEE
Q 017305 83 DVATLGNLCVDIVLNVPQ-----LPPP-------SRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGL---DCVT 147 (374)
Q Consensus 83 ~vlviG~~~~D~i~~~~~-----~p~~-------~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~---~~~~ 147 (374)
-.+.+|++.+|+...++. ++.. +.+....+.+.+.. ...++.+||++-|.++++++++. .+.|
T Consensus 8 il~G~gnpLLD~~a~Vd~~~L~KygL~~n~ail~d~~~~~~~~E~~~~--~~~~~~AGGs~qNt~R~aq~~~~~p~~~~f 85 (343)
T KOG2854|consen 8 ILVGLGNPLLDISAVVDDEFLDKYGLKLNDAILADDKHLGLFDELMEG--FNVKYSAGGSAQNTLRIAQWLLQQPGATVF 85 (343)
T ss_pred eeeccCccceeeeeccCHHHHHHcCCCCCcceecchhhHHHHHHHhhc--ccEEecCCchhHHHHHHHHHHccCCCceEE
Confidence 466799999999998763 2211 11222222222222 14667789999999999999987 8999
Q ss_pred EEEecCchhHHHHHHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcc-cHH
Q 017305 148 IGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKL-SAE 226 (374)
Q Consensus 148 v~~vG~D~~G~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l-~~~ 226 (374)
+|.||.|.+|+++++.+++.||+.++....+. +||.|.++++.++ |+++...+....-.. +.+ .++
T Consensus 86 ~GsvG~Dk~ge~l~~~~~~aGv~~~yq~~~d~---------~TGtCavli~~~n-RSL~anLgAAn~f~~---dhl~~~~ 152 (343)
T KOG2854|consen 86 FGSVGKDKFGELLKSKARAAGVNVHYQVKEDG---------PTGTCAVLITGDN-RSLCANLGAANCFKV---DHLDKEE 152 (343)
T ss_pred EeeccCchHHHHHHHHHHhcCceEEEEeccCC---------CCceEEEEEeCCC-cchhhccchhhccCH---HHhcchh
Confidence 99999999999999999999999988765443 5999999998766 887754322111111 223 244
Q ss_pred HHhhccCCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHH
Q 017305 227 VKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAE 306 (374)
Q Consensus 227 ~~~~l~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~ 306 (374)
.+..++++.++|+.||.+ ..+++.+..+.+.+.+.+.+.+++.+-.. + ...+++.+.+.++|+|+++.|++|++
T Consensus 153 ~~~lveka~v~yv~Gffl-tv~p~ai~~v~qh~~e~~r~~~lnlsapf--I---~q~~~~~l~~v~~y~DiifgNe~EA~ 226 (343)
T KOG2854|consen 153 NWALVEKAKVFYVAGFFL-TVSPDAIRKVAQHAAENNRVFTLNLSAPF--I---SQFFKDALDKVLPYADIIFGNEDEAA 226 (343)
T ss_pred hhhhhhheeEEEEEEEEE-EeChHHHHHHHHHHHHhcchhheeccchh--H---HHHHHHHHHhhcCcceEEEcCHHHHH
Confidence 567889999999999985 55678899999999888887777776432 1 12357788899999999999999999
Q ss_pred HhhCCC-----CHHHHHHHHHHc----CCCccEEEEEcCCCceEEEeCCceEEecCce--e-eeecccchhhhhcCCC
Q 017305 307 SLTGLR-----NPITAGQELLRK----GLRTKWVVVKMGPRGSILVTKSSISCAPAFK--V-LQLQWVVVLVGMWQPW 372 (374)
Q Consensus 307 ~l~g~~-----~~~~~~~~l~~~----g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~--v-~vVDttGagdaf~~G~ 372 (374)
.+.... +..+.+..+... +.+.++++||.|.+++++..+++....|..+ . ++|||+||||+|..|+
T Consensus 227 af~~~~~~~t~dv~eia~~~~~~~k~~~~~~r~vvit~g~~~~i~~~~~~v~~~~v~~~~~~~ivDtnGAGDaFvgGF 304 (343)
T KOG2854|consen 227 AFARAHGWETKDVKEIALKLSALPKVNGTRPRTVVITQGPDPVIVAEDGKVTAYPVLPLPVEEIVDTNGAGDAFVGGF 304 (343)
T ss_pred HHHHhhCCcccchHHHhhHhhccccccccccceEEEccCCCceEEecCCceEEeccccccceeeeeCCCchHHHHHHH
Confidence 987543 343444433322 2455899999999999999887766555444 3 6999999999998875
No 46
>PLN02630 pfkB-type carbohydrate kinase family protein
Probab=99.95 E-value=4.4e-26 Score=214.88 Aligned_cols=228 Identities=16% Similarity=0.149 Sum_probs=164.2
Q ss_pred CCccEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHH
Q 017305 80 KSIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRF 159 (374)
Q Consensus 80 ~~~~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~ 159 (374)
...+|+|+|++++|+++.+ ++. ....+||+++|+|.+++|||.++.++|++|+|..
T Consensus 10 ~~~~vlvvG~~~~D~i~~~------g~~---------------~~~~~GG~a~N~A~alarLG~~~~lis~VG~D~~--- 65 (335)
T PLN02630 10 PQRRVLIVGNYCHDVLIQN------GSV---------------TAESLGGAASFISNVLDALSVECELVSKVGPDFL--- 65 (335)
T ss_pred CCCCEEEEeeeeeeEEEeC------CcE---------------EEEecCcHHHHHHHHHHHcCCceEEEEEecCCcc---
Confidence 3458999999999999764 211 1134599999999999999999999999999942
Q ss_pred HHHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECC-----CCCccccccCCCCCCchhhhhhcccHHHHhhccCC
Q 017305 160 LLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDP-----SQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHS 234 (374)
Q Consensus 160 i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~-----~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 234 (374)
.+|+...+.. ++. +|+.+++++++ +|++.++...+.......+ .+.+. .+..+
T Consensus 66 -------~~v~~~~~~~-~~~--------~T~~~~~~~~~g~~~~~~e~~i~~~~ga~~~l~~~---di~~~---~~~~~ 123 (335)
T PLN02630 66 -------YQVSHPPIVI-PDS--------KTTEFHADFDQGIDGNGHEDRVLKRVCACDPIEPS---DIPDM---RYEFG 123 (335)
T ss_pred -------ccccccceec-CCC--------CceEEEEEEcCCcccCCCCeEEEEeccccCCCChH---HCCHH---Hhccc
Confidence 3677654433 333 37788887776 4566665432221111111 12111 35667
Q ss_pred cEEEEecCCCCCCCHHHHHHHHHHHHh-----cCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhh
Q 017305 235 KVLFCNGYGFDELSPALIISALEYAAQ-----VGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLT 309 (374)
Q Consensus 235 ~~v~~~g~~~~~~~~~~~~~~~~~a~~-----~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~ 309 (374)
+++++. .+.+++....+++.++. +|..++||+++....+|... ...+.++++++|++++|++|+..+
T Consensus 124 ~~~~l~----~ei~~e~~~~~~~~a~~v~~D~~g~~~~~Dp~~~~~~~~~~~---~~~~~~~L~~iDil~~ne~Ea~~l- 195 (335)
T PLN02630 124 MAVGVA----GEILPETLERMVEICDVVVVDIQALIRVFDPVDGTVKLVKLE---ETGFYDMLPRIGFLKASSEEALFI- 195 (335)
T ss_pred ceeeec----CCCcHHHHHHHHHHhhhheeccCceEEecCCcccccccchhh---HHHHHHHHHhCCEEEecHHHHhhc-
Confidence 888886 45567888899998887 78899999987421233111 123568999999999999999876
Q ss_pred CCCCHHHHHHHHHHcCCCccEEEEEcCCCceEEEeCCceEEecCceeeeecccchhhhhcCCC
Q 017305 310 GLRNPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 310 g~~~~~~~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
+.+++ .+. ..||||+|++|++++.+++.+++|++++++||||||||+|++|+
T Consensus 196 ---~~~~~----~~~----~~vvvt~G~~G~~~~~~~~~~~~~~~~v~~vDttGAGDaF~agf 247 (335)
T PLN02630 196 ---DVEEV----RQK----CCVIVTNGKKGCRIYWKDGEMRVPPFPAIQVDPTGAGDSFLGGF 247 (335)
T ss_pred ---CHHHH----ccC----CEEEEEECCCceEEEECCeeEEeCCCCCCCCCCCChHHHHHHHH
Confidence 33332 222 46999999999999998888999999999999999999999875
No 47
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=99.94 E-value=3.4e-26 Score=200.47 Aligned_cols=185 Identities=34% Similarity=0.491 Sum_probs=150.9
Q ss_pred cEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHHHHH
Q 017305 83 DVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLD 162 (374)
Q Consensus 83 ~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~~ 162 (374)
+|+++|++++|.++.++++|..++..+. ......+||++.|+|.++++||.++.++|
T Consensus 1 ~v~~iG~~~~D~~~~~~~~~~~~~~~~~----------~~~~~~~GG~~~n~a~~l~~LG~~~~~~~------------- 57 (196)
T cd00287 1 RVLVVGSLLVDVILRVDALPLPGGLVRP----------GDTEERAGGGAANVAVALARLGVSVTLVG------------- 57 (196)
T ss_pred CEEEEccceEEEEEEeccCCCCCCeEEe----------ceeeecCCCcHHHHHHHHHHCCCcEEEEE-------------
Confidence 4899999999999999999988765421 13345679999999999999999999999
Q ss_pred HHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcccHHHHhhccCCcEEEEecC
Q 017305 163 VLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGY 242 (374)
Q Consensus 163 ~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~~~g~ 242 (374)
+|++|++++
T Consensus 58 -----------------------------------------------------------------------~~~v~i~~~ 66 (196)
T cd00287 58 -----------------------------------------------------------------------ADAVVISGL 66 (196)
T ss_pred -----------------------------------------------------------------------ccEEEEecc
Confidence 456677654
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCCCCH-----HHH
Q 017305 243 GFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRNP-----ITA 317 (374)
Q Consensus 243 ~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~~~~-----~~~ 317 (374)
.+. .+.+.++++.+++.|.++++|++.... .|. .+.+.++++++|++++|++|++.+++.... .++
T Consensus 67 ~~~---~~~~~~~~~~~~~~~~~v~~D~~~~~~-~~~-----~~~~~~~~~~~dvl~~n~~E~~~l~~~~~~~~~~~~~~ 137 (196)
T cd00287 67 SPA---PEAVLDALEEARRRGVPVVLDPGPRAV-RLD-----GEELEKLLPGVDILTPNEEEAEALTGRRDLEVKEAAEA 137 (196)
T ss_pred cCc---HHHHHHHHHHHHHcCCeEEEeCCcccc-ccc-----cchHHHHHhhCCEECCCHHHHHHHhCCCCCChHHHHHH
Confidence 322 356778888899999999999997653 221 112567889999999999999999986533 367
Q ss_pred HHHHHHcCCCccEEEEEcCCCceEEEe-CCceEEecCceeeeecccchhhhhcCCC
Q 017305 318 GQELLRKGLRTKWVVVKMGPRGSILVT-KSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 318 ~~~l~~~g~~~~~vvvT~G~~Ga~~~~-~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
++.+.+++. +.+|+|+|++|+++++ +++.+++|+++++++||+|+||+|.+|+
T Consensus 138 ~~~l~~~g~--~~vvvt~G~~g~~~~~~~~~~~~~~~~~~~~vdt~GAGD~f~ag~ 191 (196)
T cd00287 138 AALLLSKGP--KVVIVTLGEKGAIVATRGGTEVHVPAFPVKVVDTTGAGDAFLAAL 191 (196)
T ss_pred HHHHHhcCC--CEEEEEECCCccEEEecCCceEEcCCccCCcccCCCchHHHHHHH
Confidence 788888876 7899999999999998 7778899998889999999999999875
No 48
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.94 E-value=1.9e-25 Score=204.71 Aligned_cols=253 Identities=21% Similarity=0.267 Sum_probs=186.5
Q ss_pred ccCCCCccEEEECCeeEEEeecC--CCC----CCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEE
Q 017305 76 SSGVKSIDVATLGNLCVDIVLNV--PQL----PPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIG 149 (374)
Q Consensus 76 ~~~~~~~~vlviG~~~~D~i~~~--~~~----p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~ 149 (374)
..++++.+|+|+|++++|.+++. +++ |.+--. ++ .....-|+++|||.+++.||.++.++|
T Consensus 5 ~~~f~~~kVLVvGDvmLDrY~~G~~~RISPEAPVPVv~-----v~--------~e~~rlGGAaNVa~NiasLGa~a~l~G 71 (467)
T COG2870 5 LPNFKQAKVLVVGDVMLDRYWYGKVSRISPEAPVPVVK-----VE--------KEEERLGGAANVAKNIASLGANAYLVG 71 (467)
T ss_pred hhhhcCCcEEEEcceeeeeeccccccccCCCCCCceEE-----ec--------ccccccccHHHHHHHHHHcCCCEEEEE
Confidence 44567889999999999999983 332 222111 11 112235889999999999999999999
Q ss_pred EecCchhHHHHHHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcccHHHHh
Q 017305 150 HVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKT 229 (374)
Q Consensus 150 ~vG~D~~G~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~ 229 (374)
.+|+|..|+.+.+.|...+|+. .+..+++++ |..-.-++..+ .++ .|-+++..........+.+.+.+
T Consensus 72 vvG~Deag~~L~~~l~~~~i~~-~l~~~~~r~--------T~~K~Rv~s~n--QQl-lRvD~Ee~~~~~~~~~ll~~~~~ 139 (467)
T COG2870 72 VVGKDEAGKALIELLKANGIDS-DLLRDKNRP--------TIVKLRVLSRN--QQL-LRLDFEEKFPIEDENKLLEKIKN 139 (467)
T ss_pred eeccchhHHHHHHHHHhcCccc-ceEeecCCC--------ceeeeeeeccc--ceE-EEecccccCcchhHHHHHHHHHH
Confidence 9999999999999999999995 455566655 33333333222 122 23333321111222334456677
Q ss_pred hccCCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhh
Q 017305 230 AIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLT 309 (374)
Q Consensus 230 ~l~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~ 309 (374)
.+.+.++++++.|.-+.+.. +..+++.||+.|++|.+||.+.. -+.+..+.+++||..|++...
T Consensus 140 ~l~~~~~vVLSDY~KG~L~~--~q~~I~~ar~~~~pVLvDPKg~D--------------f~~Y~GAtLiTPN~~E~~~~v 203 (467)
T COG2870 140 ALKSFDALVLSDYAKGVLTN--VQKMIDLAREAGIPVLVDPKGKD--------------FEKYRGATLITPNLKEFEEAV 203 (467)
T ss_pred HhhcCCEEEEeccccccchh--HHHHHHHHHHcCCcEEECCCCcc--------------hhhhCCCeecCCCHHHHHHHH
Confidence 88999999999998666654 78889999999999999998764 256788999999999999998
Q ss_pred CCCC----HHHHHHHHHHcCCCccEEEEEcCCCceEEEeCCceEEecCceeeeecccchhhhhcC
Q 017305 310 GLRN----PITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQWVVVLVGMWQ 370 (374)
Q Consensus 310 g~~~----~~~~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDttGagdaf~~ 370 (374)
|... .++.++.|.+. .+...++||++++|..++..++..|+|+..-+|.|.|||||..++
T Consensus 204 g~~~~e~el~~~g~kL~~~-~~L~alLvTRsE~GMtL~~~~~~~h~pt~AkEVyDVTGAGDTVIa 267 (467)
T COG2870 204 GKCKSEEELEERGQKLKEE-LDLSALLVTRSEKGMTLFQEGKPLHFPARAKEVYDVTGAGDTVIA 267 (467)
T ss_pred cccccHHHHHHHHHHHHHh-hCcceEEEEeccCCceeecCCcccccchhheeeeeccCCCchHHH
Confidence 8642 33445555554 233789999999999999988889999998899999999987654
No 49
>KOG2947 consensus Carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=99.90 E-value=3.5e-22 Score=171.27 Aligned_cols=248 Identities=15% Similarity=0.163 Sum_probs=182.8
Q ss_pred ccEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHHHH
Q 017305 82 IDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLL 161 (374)
Q Consensus 82 ~~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~ 161 (374)
..|+|+|...+|.+..++.+|.++...+.. +...+-||.+.|++.++++||.++.|+|.+.....-++++
T Consensus 5 k~VLcVG~~~lD~iTivd~~~fe~~~~r~~----------~g~wqRgG~asNvcTvlrlLG~~cef~Gvlsr~~~f~~lL 74 (308)
T KOG2947|consen 5 KQVLCVGCTVLDVITIVDKYPFEDSEIRCL----------SGRWQRGGNASNVCTVLRLLGAPCEFFGVLSRGHVFRFLL 74 (308)
T ss_pred ceEEEeccEEEEEEEeccCCCCCccceehh----------hhhhhcCCCcchHHHHHHHhCCchheeeecccchhHHHHH
Confidence 469999999999999999999988654321 2234559999999999999999999999999988999999
Q ss_pred HHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECC-CCCccccccCCCCCCchhhhhhcccHHHHh-hccCCcEEEE
Q 017305 162 DVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDP-SQRHGFCSRADFSKEPAFSWMNKLSAEVKT-AIKHSKVLFC 239 (374)
Q Consensus 162 ~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~-~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~-~l~~~~~v~~ 239 (374)
+.|++.|||+++....+.. ..++.|+++. .|.|++++...-..+... +++.. .+.++.|+|+
T Consensus 75 ddl~~rgIdishcpftd~~---------pp~ssiI~~r~s~trTil~~dks~p~vT~-------~dF~kvdl~qy~Wihf 138 (308)
T KOG2947|consen 75 DDLRRRGIDISHCPFTDHS---------PPFSSIIINRNSGTRTILYCDKSLPDVTA-------TDFEKVDLTQYGWIHF 138 (308)
T ss_pred HHHHhcCCCcccCccccCC---------CCcceEEEecCCCceEEEEecCCCccccH-------HHhhhcccceeeeEEE
Confidence 9999999999998654432 3344455554 577888765433222221 12211 2678999999
Q ss_pred ecCCCCCCCHHHHHHHHHHHHh--------cCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCC
Q 017305 240 NGYGFDELSPALIISALEYAAQ--------VGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGL 311 (374)
Q Consensus 240 ~g~~~~~~~~~~~~~~~~~a~~--------~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~ 311 (374)
.+- -+.+.+ ++++...+ .++.|++|.... ++....++..+|+++.+.+-++.+ |.
T Consensus 139 E~R----np~etl-kM~~~I~~~N~r~pe~qrI~vSvd~en~-----------req~~~l~am~DyVf~sK~~a~~~-gf 201 (308)
T KOG2947|consen 139 EAR----NPSETL-KMLQRIDAHNTRQPEEQRIRVSVDVENP-----------REQLFQLFAMCDYVFVSKDVAKHL-GF 201 (308)
T ss_pred ecC----ChHHHH-HHHHHHHHhhcCCCccceEEEEEEecCc-----------HHHHHHHhhcccEEEEEHHHHhhh-cc
Confidence 843 233433 33332222 346788887543 355678899999999998777765 78
Q ss_pred CCHHHHHHHHHHcCC---CccEEEEEcCCCceEEEe-CCceEEecCcee-eeecccchhhhhcCCC
Q 017305 312 RNPITAGQELLRKGL---RTKWVVVKMGPRGSILVT-KSSISCAPAFKV-LQLQWVVVLVGMWQPW 372 (374)
Q Consensus 312 ~~~~~~~~~l~~~g~---~~~~vvvT~G~~Ga~~~~-~~~~~~~pa~~v-~vVDttGagdaf~~G~ 372 (374)
.+++|+++.+..+-. .-..+|+-.+++||-... +|+.+++++++. ++|||.|++|.|.+|+
T Consensus 202 ks~rea~~~l~~r~~~~~pkpv~I~~w~~eGA~~l~adg~yfev~a~~ppkvVD~lg~~DtF~A~v 267 (308)
T KOG2947|consen 202 KSPREACEGLYGRVPKGKPKPVLICPWASEGAGALGADGKYFEVDAFKPPKVVDTLGAGDTFNAGV 267 (308)
T ss_pred CCHHHHHHHHHhhcccCCCCcEEEeccccccccccCCCCCEEecCCCCCccceeeccCCCcchHHH
Confidence 899999998876522 114688899999987665 567889999875 8999999999998874
No 50
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.
Probab=99.55 E-value=3.7e-14 Score=129.56 Aligned_cols=138 Identities=17% Similarity=0.022 Sum_probs=103.7
Q ss_pred cCCcEEEEecCCCCCCCHHHHHHHHHHHHhc--CCeEEEcCCCCCC-CCCCCChHHHHHHHhhhc-cCcEEecCHHHHHH
Q 017305 232 KHSKVLFCNGYGFDELSPALIISALEYAAQV--GTSIFFDPGPRGK-SLSSGTPEEQRALSYFLS-TSDVLLLTSDEAES 307 (374)
Q Consensus 232 ~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~--g~~v~~D~~~~~~-~~~~~~~~~~~~~~~ll~-~~Dil~~N~~Ea~~ 307 (374)
.+.+++ ..|+.......+.+.++++.+++. +.+|++||+.... .+|...++..+.+.+++. ++|++++|.+|++.
T Consensus 71 ~~~~~v-~~G~l~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~l~~~~dvi~pN~~Ea~~ 149 (254)
T cd01173 71 LEYDAV-LTGYLGSAEQVEAVAEIVKRLKEKNPNLLYVCDPVMGDNGKLYVVAEEIVPVYRDLLVPLADIITPNQFELEL 149 (254)
T ss_pred ccCCEE-EEecCCCHHHHHHHHHHHHHHHHhCCCceEEECCCCCcCCcceecChhHHHHHHHHHHhcCCEECCcHHHHHH
Confidence 567777 567755555567888899888876 8999999974321 133223455667777777 99999999999999
Q ss_pred hhCCC-----CHHHHHHHHHHcCCCccEEEEEcCCC------ceEEEeCCceEEecCceee-eecccchhhhhcCCC
Q 017305 308 LTGLR-----NPITAGQELLRKGLRTKWVVVKMGPR------GSILVTKSSISCAPAFKVL-QLQWVVVLVGMWQPW 372 (374)
Q Consensus 308 l~g~~-----~~~~~~~~l~~~g~~~~~vvvT~G~~------Ga~~~~~~~~~~~pa~~v~-vVDttGagdaf~~G~ 372 (374)
|+|.+ +.+++++.|.++|+ +.|+||.|.. |++++++++.++++.+.++ ++|++|+||+|.+|+
T Consensus 150 l~g~~~~~~~~~~~~~~~l~~~g~--~~Vvit~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~GaGD~f~a~~ 224 (254)
T cd01173 150 LTGKKINDLEDAKAAARALHAKGP--KTVVVTSVELADDDRIEMLGSTATEAWLVQRPKIPFPAYFNGTGDLFAALL 224 (254)
T ss_pred HcCCCcCCHHHHHHHHHHHHHhCC--CEEEEEeeccCCCCcEEEEEEecCccEEEEeeccCCCCCcCChHHHHHHHH
Confidence 99964 45678888998887 8899999985 7888776665444444445 799999999998764
No 51
>PRK05756 pyridoxamine kinase; Validated
Probab=99.50 E-value=1.5e-13 Score=127.82 Aligned_cols=138 Identities=20% Similarity=0.122 Sum_probs=102.9
Q ss_pred ccCCcEEEEecCCCCCCCHHHHHHHHHHHHhcC--CeEEEcCCCCCCC--CCCCChHHHH-HHHhhhccCcEEecCHHHH
Q 017305 231 IKHSKVLFCNGYGFDELSPALIISALEYAAQVG--TSIFFDPGPRGKS--LSSGTPEEQR-ALSYFLSTSDVLLLTSDEA 305 (374)
Q Consensus 231 l~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g--~~v~~D~~~~~~~--~~~~~~~~~~-~~~~ll~~~Dil~~N~~Ea 305 (374)
+...+++ ++||..+....+.+.++++.+++.+ ..+++||...... .|. .++..+ ..+.+++++|++++|+.|+
T Consensus 72 l~~~~~v-~~G~l~~~~~~~~v~~~i~~~k~~~~~~~~v~DPv~~d~~~~~~~-~~~~~~~~~~~ll~~adiitpN~~Ea 149 (286)
T PRK05756 72 LGECDAV-LSGYLGSAEQGEAILDAVRRVKAANPQALYFCDPVMGDPEKGCIV-APGVAEFLRDRALPAADIITPNLFEL 149 (286)
T ss_pred cccCCEE-EECCCCCHHHHHHHHHHHHHHHHhCCCceEEECCccccCCCCEEE-CccHhHHHHHhhcccccEecCCHHHH
Confidence 4577866 7777655555678888888887765 5689999865421 221 233333 3345899999999999999
Q ss_pred HHhhCCC-----CHHHHHHHHHHcCCCccEEEEEcCCC--------ceEEEeCCceEEecCceeee-ecccchhhhhcCC
Q 017305 306 ESLTGLR-----NPITAGQELLRKGLRTKWVVVKMGPR--------GSILVTKSSISCAPAFKVLQ-LQWVVVLVGMWQP 371 (374)
Q Consensus 306 ~~l~g~~-----~~~~~~~~l~~~g~~~~~vvvT~G~~--------Ga~~~~~~~~~~~pa~~v~v-VDttGagdaf~~G 371 (374)
+.|+|.+ +..++++.+++.|+ +.||||.|.. |++++++++.++++.+++++ +|++|+||+|.+|
T Consensus 150 ~~L~g~~~~~~~~~~~~~~~l~~~g~--~~Vvvt~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~GaGD~f~a~ 227 (286)
T PRK05756 150 EWLSGRPVETLEDAVAAARALIARGP--KIVLVTSLARAGYPADRFEMLLVTADGAWHISRPLVDFMRQPVGVGDLTSAL 227 (286)
T ss_pred HHHhCCCcCCHHHHHHHHHHHHHhCC--CEEEEeccccCCCCCCcEEEEEEECCceEEEecCccCCCCCCCChHHHHHHH
Confidence 9999853 34567788888887 7899999876 57777777777788777788 7999999999877
Q ss_pred C
Q 017305 372 W 372 (374)
Q Consensus 372 ~ 372 (374)
+
T Consensus 228 ~ 228 (286)
T PRK05756 228 F 228 (286)
T ss_pred H
Confidence 5
No 52
>TIGR00687 pyridox_kin pyridoxal kinase. ThiD and related proteins form an outgroup.
Probab=99.46 E-value=4.2e-13 Score=124.72 Aligned_cols=138 Identities=17% Similarity=0.153 Sum_probs=100.5
Q ss_pred ccCCcEEEEecCCCCCCCHHHHHHHHHHHHhcC--CeEEEcCCCCCCC--CCCCChHHHHHH-HhhhccCcEEecCHHHH
Q 017305 231 IKHSKVLFCNGYGFDELSPALIISALEYAAQVG--TSIFFDPGPRGKS--LSSGTPEEQRAL-SYFLSTSDVLLLTSDEA 305 (374)
Q Consensus 231 l~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g--~~v~~D~~~~~~~--~~~~~~~~~~~~-~~ll~~~Dil~~N~~Ea 305 (374)
+.++|++ ++||.......+.+.++++.+++.+ +.+++||...... .|. .+...+.+ ..+++++|++++|..|+
T Consensus 72 ~~~~d~v-~~G~l~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~d~~~~~~~-~~~~~~~~~~~ll~~adii~pN~~Ea 149 (286)
T TIGR00687 72 LNQCDAV-LSGYLGSAEQVAMVVGIVRQVKQANPQALYVCDPVMGDPEKGCYV-APDLLEVYREKAIPVADIITPNQFEL 149 (286)
T ss_pred cccCCEE-EECCCCCHHHHHHHHHHHHHHHHhCCCCcEEECCeeeeCCCCeee-ChhHHHHHHHhccccccEecCCHHHH
Confidence 4588986 6677655555678888888888765 6788999644210 111 23333444 45889999999999999
Q ss_pred HHhhCCC-----CHHHHHHHHHHcCCCccEEEEE-cCCCce--------EEEeCCceEEecCceee-eecccchhhhhcC
Q 017305 306 ESLTGLR-----NPITAGQELLRKGLRTKWVVVK-MGPRGS--------ILVTKSSISCAPAFKVL-QLQWVVVLVGMWQ 370 (374)
Q Consensus 306 ~~l~g~~-----~~~~~~~~l~~~g~~~~~vvvT-~G~~Ga--------~~~~~~~~~~~pa~~v~-vVDttGagdaf~~ 370 (374)
+.|+|.+ +..++++.+++.|+ +.|||| .|.+|+ +++++++.++++.++++ ++||+|+||+|.+
T Consensus 150 ~~L~g~~~~~~~~~~~~~~~l~~~g~--~~Viit~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~A 227 (286)
T TIGR00687 150 ELLTGRKINTVEEALAAADALIAMGP--DIVLVTHLARAGSQRDRDFEGLVVTQEGRWHISRPLAVFMRQPVGTGDLIAA 227 (286)
T ss_pred HHHhCCCcCCHHHHHHHHHHHHHhCC--CEEEEEeccccCCCCCcceeEEEEcCCceEEEeccCcCCCCCCCChHHHHHH
Confidence 9999863 24466888888887 789999 788885 44555667777766677 6999999999988
Q ss_pred CC
Q 017305 371 PW 372 (374)
Q Consensus 371 G~ 372 (374)
|+
T Consensus 228 ~~ 229 (286)
T TIGR00687 228 LL 229 (286)
T ss_pred HH
Confidence 75
No 53
>KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only]
Probab=99.44 E-value=4.8e-12 Score=118.31 Aligned_cols=211 Identities=18% Similarity=0.178 Sum_probs=139.9
Q ss_pred ccEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHHHH
Q 017305 82 IDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLL 161 (374)
Q Consensus 82 ~~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~ 161 (374)
.+-+++|..++|+...+|+--+-+.. .+++...+..||.+.|.|.++++||.++.+|++||+|..|++.+
T Consensus 341 ~KPv~vGa~i~D~~~k~d~d~K~dG~----------sy~~~~~Qa~GGVarN~A~a~~~lg~d~~liSavG~d~n~~~~~ 410 (614)
T KOG3009|consen 341 RKPVSVGATIVDFEAKTDEDVKDDGG----------SYNGQVVQAMGGVARNHADALARLGCDSVLISAVGDDNNGHFFR 410 (614)
T ss_pred cCceeecceEEEeEEeecccccccCC----------cccchhhhhccchhhhHHHHHHHhcCCeeEEEEeccCCcchhhh
Confidence 35699999999999998763332221 12233455679999999999999999999999999994333222
Q ss_pred HHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcccHHHHhhccCCcEEEEec
Q 017305 162 DVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNG 241 (374)
Q Consensus 162 ~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~~~g 241 (374)
+.-.+ ..+...+.+ ++++++++
T Consensus 411 ~~~~~--------------------------------------------------------~~e~~~dl~-~a~~I~~D- 432 (614)
T KOG3009|consen 411 QNSHK--------------------------------------------------------IVESNEDLL-SADFILLD- 432 (614)
T ss_pred hhhhh--------------------------------------------------------hhhhhhhhh-cCCEEEEc-
Confidence 10000 001112223 78999998
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhh-ccCcEEecCHHHHHHhhCCC----C---
Q 017305 242 YGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFL-STSDVLLLTSDEAESLTGLR----N--- 313 (374)
Q Consensus 242 ~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll-~~~Dil~~N~~Ea~~l~g~~----~--- 313 (374)
+++++..+.++++ +|.+..+|+|+|....+ ..+.+.-++ ..++.++||..|+....... +
T Consensus 433 ---sNiS~~~Ma~il~-ak~~k~~V~fEPTd~~k--------~~K~fk~l~v~~i~~i~PN~~Ell~a~k~~~v~~nps~ 500 (614)
T KOG3009|consen 433 ---SNISVPVMARILE-AKKHKKQVWFEPTDIDK--------VKKVFKTLLVGAITAISPNANELLKAAKLCHVSVNPSV 500 (614)
T ss_pred ---CCCCHHHHHHHHH-hhhccCceEecCCCchh--------hhhhhhhcceeeEEeeCCCHHHHHHHhhcCceeeChhh
Confidence 6889999999998 89999999999986542 122232222 34899999999985432211 1
Q ss_pred ------HHHHHHHHHHc-CCCccEEEEEcCCCceEEEeCCc-----eEEecCcee--eeecccchhhhhcCCC
Q 017305 314 ------PITAGQELLRK-GLRTKWVVVKMGPRGSILVTKSS-----ISCAPAFKV--LQLQWVVVLVGMWQPW 372 (374)
Q Consensus 314 ------~~~~~~~l~~~-g~~~~~vvvT~G~~Ga~~~~~~~-----~~~~pa~~v--~vVDttGagdaf~~G~ 372 (374)
..+.++.+.+. -.+....|+|+.++|+++..+++ ....|+..+ ++|+..|+||+|.+|+
T Consensus 501 ~q~~~~~~~~~~~~~~k~~~~~s~~I~tl~~~G~l~~yr~k~g~l~~~s~~p~~~~~n~vsvsgaGdsf~~g~ 573 (614)
T KOG3009|consen 501 IQTADGVLELIEKEKTKLLLNTSIFIVTLANKGSLVVYRNKLGQLEFQSLPPPLQMNNVVSVSGAGDSFNSGV 573 (614)
T ss_pred hccchHHHHHHHHHHHHhhcccceEEEEeccCceEEEecCCCCCcccccCCCcccccceeEeccCCcccccce
Confidence 11222222111 11225799999999998887653 233444433 7999999999999987
No 54
>PRK12413 phosphomethylpyrimidine kinase; Provisional
Probab=99.44 E-value=9.1e-13 Score=120.32 Aligned_cols=121 Identities=23% Similarity=0.175 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHH-hcCCeEEEcCCCCCCCCCC--CChHHHHHHHhhhccCcEEecCHHHHHHhhCCC-----CHHHHHHH
Q 017305 249 PALIISALEYAA-QVGTSIFFDPGPRGKSLSS--GTPEEQRALSYFLSTSDVLLLTSDEAESLTGLR-----NPITAGQE 320 (374)
Q Consensus 249 ~~~~~~~~~~a~-~~g~~v~~D~~~~~~~~~~--~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~~-----~~~~~~~~ 320 (374)
.+....+++.++ +.+.++++||+.+.. .|. ..+...+.+.++++++|++++|++|++.|+|.+ +..++++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~vv~DPv~~~~-~~~~~~~~~~~~~l~~ll~~~dli~pN~~E~~~L~g~~~~~~~~~~~~a~~ 160 (253)
T PRK12413 82 VEIAEQALDFIKGHPGIPVVLDPVLVCK-ETHDVEVSELRQELIQFFPYVTVITPNLVEAELLSGKEIKTLEDMKEAAKK 160 (253)
T ss_pred HHHHHHHHHHHHhCCCCCEEEcCceecC-CCCccccHHHHHHHHHHhccCcEECCCHHHHHHHhCcCCCCHHHHHHHHHH
Confidence 455566666665 468899999998764 342 234445566678999999999999999999963 34577888
Q ss_pred HHHcCCCccEEEEEcCCCce-----EEEeCCceEEecCceeeeecccchhhhhcCCC
Q 017305 321 LLRKGLRTKWVVVKMGPRGS-----ILVTKSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 321 l~~~g~~~~~vvvT~G~~Ga-----~~~~~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
+++.|+ +.||||.|++|+ .++..++.++.+.+++.++|++|+||+|.+|+
T Consensus 161 l~~~g~--~~Vvvt~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaGDaf~a~~ 215 (253)
T PRK12413 161 LYDLGA--KAVVIKGGNRLSQKKAIDLFYDGKEFVILESPVLEKNNIGAGCTFASSI 215 (253)
T ss_pred HHHcCC--CEEEEeCCCCCCCCcceEEEEcCCEEEEEeecccCCCCCChHHHHHHHH
Confidence 888876 889999998742 23334444555667778899999999998764
No 55
>PRK12412 pyridoxal kinase; Reviewed
Probab=99.43 E-value=1.6e-12 Score=119.64 Aligned_cols=139 Identities=17% Similarity=0.100 Sum_probs=101.1
Q ss_pred HhhccC--CcEEEEecCCCCCCCHHHHHHHHHHHHhcCCe-EEEcCCCCCCCCC-CCChHHHH-HHHhhhccCcEEecCH
Q 017305 228 KTAIKH--SKVLFCNGYGFDELSPALIISALEYAAQVGTS-IFFDPGPRGKSLS-SGTPEEQR-ALSYFLSTSDVLLLTS 302 (374)
Q Consensus 228 ~~~l~~--~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~-v~~D~~~~~~~~~-~~~~~~~~-~~~~ll~~~Dil~~N~ 302 (374)
...+++ .+++.++ .-.+.+.+..+++.+++.+.+ +++||......-. ...++..+ ..+.+++++|++++|+
T Consensus 65 ~~l~~d~~~~~ikiG----~l~~~~~v~~i~~~~~~~~~~~vv~DPv~~~~~g~~~~~~~~~~~~~~~ll~~advitpN~ 140 (268)
T PRK12412 65 ETTIEGVGVDALKTG----MLGSVEIIEMVAETIEKHNFKNVVVDPVMVCKGADEALHPETNDCLRDVLVPKALVVTPNL 140 (268)
T ss_pred HHHHhCCCCCEEEEC----CCCCHHHHHHHHHHHHhcCCCCEEECcCeeeCCCCcCCChHHHHHHHHhhhccceEEcCCH
Confidence 334444 7888885 234678888888888888876 9999975432100 00122223 3456889999999999
Q ss_pred HHHHHhhCCC-----CHHHHHHHHHHcCCCccEEEEEcCCCce------EEEeCCceEEecCceeeeecccchhhhhcCC
Q 017305 303 DEAESLTGLR-----NPITAGQELLRKGLRTKWVVVKMGPRGS------ILVTKSSISCAPAFKVLQLQWVVVLVGMWQP 371 (374)
Q Consensus 303 ~Ea~~l~g~~-----~~~~~~~~l~~~g~~~~~vvvT~G~~Ga------~~~~~~~~~~~pa~~v~vVDttGagdaf~~G 371 (374)
.|++.|+|.+ +..++++.|+++|+ +.|+||.|.+|+ +++.+++.++++.++++++||+|+||+|.++
T Consensus 141 ~Ea~~L~g~~~~~~~~~~~aa~~l~~~g~--~~ViIt~G~~g~~~~~~~~~~~~~~~~~~~~~~v~~~~t~GaGD~f~aa 218 (268)
T PRK12412 141 FEAYQLSGVKINSLEDMKEAAKKIHALGA--KYVLIKGGSKLGTETAIDVLYDGETFDLLESEKIDTTNTHGAGCTYSAA 218 (268)
T ss_pred HHHHHHhCcCCCCHHHHHHHHHHHHhcCC--CEEEEeccCCCCCCceEEEEEeCCEEEEEEeCccCCCCCCchHHHHHHH
Confidence 9999999853 35678888988887 889999998764 3455555567888889999999999999776
Q ss_pred C
Q 017305 372 W 372 (374)
Q Consensus 372 ~ 372 (374)
+
T Consensus 219 ~ 219 (268)
T PRK12412 219 I 219 (268)
T ss_pred H
Confidence 4
No 56
>PRK07105 pyridoxamine kinase; Validated
Probab=99.42 E-value=1.3e-12 Score=121.24 Aligned_cols=136 Identities=14% Similarity=0.086 Sum_probs=95.7
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCC-CCCCC-ChHHHHHHHhhhccCcEEecCHHHHHHhhC
Q 017305 233 HSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGK-SLSSG-TPEEQRALSYFLSTSDVLLLTSDEAESLTG 310 (374)
Q Consensus 233 ~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~-~~~~~-~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g 310 (374)
..+.+++ ||.......+.+.++++.+++.+.++++||+.... .+|.. .++..+.+.++++++|++++|+.|++.|+|
T Consensus 75 ~~~aik~-G~l~~~~~~~~v~~~~~~~~~~~~~vv~DPv~~~~~~l~~~~~~~~~~~~~~ll~~advitpN~~Ea~~L~g 153 (284)
T PRK07105 75 KFDAIYS-GYLGSPRQIQIVSDFIKYFKKKDLLVVVDPVMGDNGKLYQGFDQEMVEEMRKLIQKADVITPNLTEACLLLD 153 (284)
T ss_pred ccCEEEE-CcCCCHHHHHHHHHHHHHhccCCCeEEECCccccCCcCCCCCCHHHHHHHHHHHhhCCEecCCHHHHHHHcC
Confidence 6788876 55433222344555555556668899999985431 13322 345566677899999999999999999998
Q ss_pred CC---------CHHHHHHHHHHcCCCccEEEEEc-----CCCceEEEeCC--ceEEecCceeeeecccchhhhhcCCC
Q 017305 311 LR---------NPITAGQELLRKGLRTKWVVVKM-----GPRGSILVTKS--SISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 311 ~~---------~~~~~~~~l~~~g~~~~~vvvT~-----G~~Ga~~~~~~--~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
.+ +..++++.+.+.|+ +.||||. |..|+++++++ ..++.+.+.++ +|++|+||+|.+|+
T Consensus 154 ~~~~~~~~~~~~~~~~a~~l~~~g~--~~Vvvt~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~-~~~~GaGD~f~aa~ 228 (284)
T PRK07105 154 KPYLEKSYSEEEIKQLLRKLADLGP--KIVIITSVPFEDGKIGVAYYDRATDRFWKVFCKYIP-AHYPGTGDIFTSVI 228 (284)
T ss_pred CCcCcCCCCHHHHHHHHHHHHhcCC--CEEEEcCeeeCCCeEEEEEEeCCCCeEEEEeecccC-CCcCChhHHHHHHH
Confidence 53 23467788888887 7899999 67788887643 34455544444 89999999998764
No 57
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Probab=99.42 E-value=3.6e-12 Score=115.52 Aligned_cols=134 Identities=19% Similarity=0.109 Sum_probs=99.3
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHHhc-CCeEEEcCCCCCCCCCC-CChHHHH-HHHhhhccCcEEecCHHHHHHhh
Q 017305 233 HSKVLFCNGYGFDELSPALIISALEYAAQV-GTSIFFDPGPRGKSLSS-GTPEEQR-ALSYFLSTSDVLLLTSDEAESLT 309 (374)
Q Consensus 233 ~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~-g~~v~~D~~~~~~~~~~-~~~~~~~-~~~~ll~~~Dil~~N~~Ea~~l~ 309 (374)
+.+++.+ |+. .+.+.+..+.+.+++. +.++++||......... .+++..+ ....+++++|++++|..|++.|+
T Consensus 68 ~~~~i~~-G~l---~~~~~~~~i~~~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L~ 143 (242)
T cd01169 68 PVDAIKI-GML---GSAEIIEAVAEALKDYPDIPVVLDPVMVAKSGDSLLDDDAIEALRELLLPLATLITPNLPEAELLT 143 (242)
T ss_pred CCCEEEE-CCC---CCHHHHHHHHHHHHhCCCCcEEECCceeCCCCCcccCHHHHHHHHHHhhccCeEEeCCHHHHHHHh
Confidence 5788877 443 2467777788888776 88999999865321100 0222323 33567799999999999999999
Q ss_pred CCC-----CHHHHHHHHHHcCCCccEEEEEcCCCc----e-EEEeCCceEEecCceeeeecccchhhhhcCCC
Q 017305 310 GLR-----NPITAGQELLRKGLRTKWVVVKMGPRG----S-ILVTKSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 310 g~~-----~~~~~~~~l~~~g~~~~~vvvT~G~~G----a-~~~~~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
|.. +..++++.+.++|. +.||||.|++| + +++.+++.++++.++++++|++|+||+|.+++
T Consensus 144 g~~~~~~~~~~~~~~~l~~~g~--~~Vvit~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaGD~f~a~l 214 (242)
T cd01169 144 GLEIATEEDMMKAAKALLALGA--KAVLIKGGHLPGDEAVDVLYDGGGFFEFESPRIDTKNTHGTGCTLSSAI 214 (242)
T ss_pred CCCCCCHHHHHHHHHHHHhcCC--CEEEEecCCCCCCceeEEEEECCcEEEEecceeCCCCCCChHHHHHHHH
Confidence 963 24467788888887 78999999985 3 66677777889999889999999999997754
No 58
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=99.39 E-value=4.5e-12 Score=115.77 Aligned_cols=132 Identities=17% Similarity=0.114 Sum_probs=99.4
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHHhcCC-eEEEcCCCCCC---CCCCCChHHHH-HHHhhhccCcEEecCHHHHHH
Q 017305 233 HSKVLFCNGYGFDELSPALIISALEYAAQVGT-SIFFDPGPRGK---SLSSGTPEEQR-ALSYFLSTSDVLLLTSDEAES 307 (374)
Q Consensus 233 ~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~-~v~~D~~~~~~---~~~~~~~~~~~-~~~~ll~~~Dil~~N~~Ea~~ 307 (374)
+.+.+.++ .-.+.+.+..+++.+++++. ++++||..... .++ +++..+ ....+++++|++++|..|++.
T Consensus 67 ~~~aikiG----~l~~~~~~~~i~~~~~~~~~~~vVlDPv~~~~~g~~l~--~~~~~~~~~~~ll~~~dvitpN~~Ea~~ 140 (254)
T TIGR00097 67 PVDAAKTG----MLASAEIVEAVARKLREYPVRPLVVDPVMVAKSGAPLL--EEEAIEALRKRLLPLATLITPNLPEAEA 140 (254)
T ss_pred CCCEEEEC----CcCCHHHHHHHHHHHHhcCCCcEEECCccccCCCCcCC--CHHHHHHHHHhccccccEecCCHHHHHH
Confidence 45778774 23356888888898888888 69999975321 122 122222 334688999999999999999
Q ss_pred hhCCC-----CHHHHHHHHHHcCCCccEEEEEcCC----Cce-EEEeCCceEEecCceeeeecccchhhhhcCCC
Q 017305 308 LTGLR-----NPITAGQELLRKGLRTKWVVVKMGP----RGS-ILVTKSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 308 l~g~~-----~~~~~~~~l~~~g~~~~~vvvT~G~----~Ga-~~~~~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
|+|.+ +..++++.|.+.|+ +.|+||.|. +|. +++++++.++++.++++++|++|+||+|.+++
T Consensus 141 L~g~~~~~~~~~~~~a~~l~~~g~--~~Vvvt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~aal 213 (254)
T TIGR00097 141 LLGTKIRTEQDMIKAAKKLRELGP--KAVLIKGGHLEGDQAVDVLFDGGEIHILKAPRIETKNTHGTGCTLSAAI 213 (254)
T ss_pred HhCCCCCCHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCceeEEEEECCeEEEEEecccCCCCCCChHHHHHHHH
Confidence 99853 35678888888887 789999997 344 56677777788988999999999999987654
No 59
>PRK08176 pdxK pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase; Reviewed
Probab=99.34 E-value=8.7e-12 Score=115.47 Aligned_cols=137 Identities=20% Similarity=0.191 Sum_probs=92.7
Q ss_pred ccCCcEEEEecCCCCCCCHHHHHHHHHHHHh--cCCeEEEcCCCCCC--CCCCCChHHHHHH-HhhhccCcEEecCHHHH
Q 017305 231 IKHSKVLFCNGYGFDELSPALIISALEYAAQ--VGTSIFFDPGPRGK--SLSSGTPEEQRAL-SYFLSTSDVLLLTSDEA 305 (374)
Q Consensus 231 l~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~--~g~~v~~D~~~~~~--~~~~~~~~~~~~~-~~ll~~~Dil~~N~~Ea 305 (374)
+.+.|.+++ ||..+....+.+.++++..+. .+.++++||..... .+|. .++..+.+ +.+++++|++++|+.|+
T Consensus 86 l~~~d~i~~-G~l~s~~~~~~i~~~l~~~~~~~~~~~vv~DPvm~d~~~~~~~-~~~~~~~~~~~Ll~~advitPN~~Ea 163 (281)
T PRK08176 86 LRQLRAVTT-GYMGSASQIKILAEWLTALRADHPDLLIMVDPVIGDIDSGIYV-KPDLPEAYRQHLLPLAQGLTPNIFEL 163 (281)
T ss_pred cccCCEEEE-CCCCCHHHHHHHHHHHHHHHHHCCCCcEEeCCccccCCCCeEE-CccHHHHHHHHhHhhcCEeCCCHHHH
Confidence 347888887 443222223445555554433 47789999984331 1221 23333445 45899999999999999
Q ss_pred HHhhCCC-----CHHHHHHHHHHcCCCccEEEEEcCCCc-------eEEEeCCceEEecCceeeeecccchhhhhcCCC
Q 017305 306 ESLTGLR-----NPITAGQELLRKGLRTKWVVVKMGPRG-------SILVTKSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 306 ~~l~g~~-----~~~~~~~~l~~~g~~~~~vvvT~G~~G-------a~~~~~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
+.|+|.+ +..++++.|++.|+ +.||||.|.+| ++++++++.+. ...+...+|++|+||+|.+++
T Consensus 164 ~~L~g~~~~~~~~~~~~~~~l~~~g~--~~VvIT~g~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~GaGD~faa~~ 239 (281)
T PRK08176 164 EILTGKPCRTLDSAIAAAKSLLSDTL--KWVVITSAAGNEENQEMQVVVVTADSVNV-ISHPRVDTDLKGTGDLFCAEL 239 (281)
T ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCC--CEEEEeeccCCCCCCcEEEEEEeCCceEE-EecCccCCCCCChhHHHHHHH
Confidence 9999953 23467888988887 88999999988 56666665443 344555679999999998764
No 60
>PRK06427 bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed
Probab=99.33 E-value=2e-11 Score=112.26 Aligned_cols=132 Identities=20% Similarity=0.142 Sum_probs=98.4
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHHhcCC-eEEEcCCCCCC---CCCCCChHHHHHH-HhhhccCcEEecCHHHHHH
Q 017305 233 HSKVLFCNGYGFDELSPALIISALEYAAQVGT-SIFFDPGPRGK---SLSSGTPEEQRAL-SYFLSTSDVLLLTSDEAES 307 (374)
Q Consensus 233 ~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~-~v~~D~~~~~~---~~~~~~~~~~~~~-~~ll~~~Dil~~N~~Ea~~ 307 (374)
+.+.+.++ +. .+.+.+..+++.+++.+. ++++||..... .++ .++..+.+ +++++++|++++|..|++.
T Consensus 73 ~~~ai~iG-~l---~~~~~~~~i~~~~~~~~~~~vv~DPv~~~~~~~~~~--~~~~~~~~~~~ll~~~dvitpN~~Ea~~ 146 (266)
T PRK06427 73 RIDAVKIG-ML---ASAEIIETVAEALKRYPIPPVVLDPVMIAKSGDPLL--ADDAVAALRERLLPLATLITPNLPEAEA 146 (266)
T ss_pred CCCEEEEC-Cc---CCHHHHHHHHHHHHhCCCCCEEEcCccccCCCCcCC--CHHHHHHHHHhhhCcCeEEcCCHHHHHH
Confidence 56778774 32 246777788888888775 79999975432 122 22333334 4689999999999999999
Q ss_pred hhCCC--C----HHHHHHHHHHcCCCccEEEEEcCC--Cce----EEEeCCceEEecCceeeeecccchhhhhcCCC
Q 017305 308 LTGLR--N----PITAGQELLRKGLRTKWVVVKMGP--RGS----ILVTKSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 308 l~g~~--~----~~~~~~~l~~~g~~~~~vvvT~G~--~Ga----~~~~~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
|+|.+ + .+++++.+.++|+ +.||||.|. +|. +++++++.++++.++++++|++|+||+|.+++
T Consensus 147 L~g~~~~~~~~~~~~~a~~l~~~g~--~~Vvit~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~GaGD~f~a~l 221 (266)
T PRK06427 147 LTGLPIADTEDEMKAAARALHALGC--KAVLIKGGHLLDGEESVDWLFDGEGEERFSAPRIPTKNTHGTGCTLSAAI 221 (266)
T ss_pred HhCCCCCCcHHHHHHHHHHHHhcCC--CEEEEcCCCCCCCCceeEEEEeCCcEEEEEeeeECCCCCCChHHHHHHHH
Confidence 99853 1 4678888888887 789999998 564 56666667788888889999999999998754
No 61
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=99.28 E-value=2.2e-11 Score=119.80 Aligned_cols=121 Identities=20% Similarity=0.177 Sum_probs=93.2
Q ss_pred CHHHHHHHHHHHHhcCCeEEEcCCCCCC---CCCCCChHHH-HHHHhhhccCcEEecCHHHHHHhhCCC-----CHHHHH
Q 017305 248 SPALIISALEYAAQVGTSIFFDPGPRGK---SLSSGTPEEQ-RALSYFLSTSDVLLLTSDEAESLTGLR-----NPITAG 318 (374)
Q Consensus 248 ~~~~~~~~~~~a~~~g~~v~~D~~~~~~---~~~~~~~~~~-~~~~~ll~~~Dil~~N~~Ea~~l~g~~-----~~~~~~ 318 (374)
+.+.+..+++.+++.+.++++||..+.. .+| .++.. ....++++++|++++|+.|++.|+|.+ +.++++
T Consensus 82 ~~e~~~~i~~~~k~~g~~vv~DPv~~~~sG~~l~--~~~~~~~l~~~llp~adli~pN~~Ea~~L~g~~i~~~~d~~~aa 159 (448)
T PRK08573 82 NREIIEAVAKTVSKYGFPLVVDPVMIAKSGAPLL--REDAVDALIKRLLPLATVVTPNRPEAEKLTGMKIRSVEDARKAA 159 (448)
T ss_pred CHHHHHHHHHHHHHcCCCEEEcCccccCCCCcCC--CHHHHHHHHHhhhccCEEEcCCHHHHHHHhCCCCCCHHHHHHHH
Confidence 4688889999999999999999975431 233 22222 234678899999999999999999963 456778
Q ss_pred HHHHH-cCCCccEEEEEcCC----Cce-EEEeCCceEEecCceeeeecccchhhhhcCCC
Q 017305 319 QELLR-KGLRTKWVVVKMGP----RGS-ILVTKSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 319 ~~l~~-~g~~~~~vvvT~G~----~Ga-~~~~~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
+.|.+ .|+ +.||||.|. +|+ +++.+++.+++++++++++||+|+||+|.+++
T Consensus 160 ~~L~~~~G~--~~VvVt~G~~~g~~~~~~~~~~~~~~~~~~~~v~~~dt~GAGDaFsAa~ 217 (448)
T PRK08573 160 KYIVEELGA--EAVVVKGGHLEGEEAVDVLYHNGTFREFRAPRVESGCTHGTGCSFSAAI 217 (448)
T ss_pred HHHHHHcCC--CEEEEecccCCCCceeEEEEECCeEEEEEecCcCCCCCCChHHHHHHHH
Confidence 88875 676 789999985 354 45566667788888899999999999998764
No 62
>PRK12616 pyridoxal kinase; Reviewed
Probab=99.24 E-value=1.1e-10 Score=107.61 Aligned_cols=134 Identities=15% Similarity=0.077 Sum_probs=96.5
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHHhcC-CeEEEcCCCCCCCCCC-CChHHHHHHH-hhhccCcEEecCHHHHHHhh
Q 017305 233 HSKVLFCNGYGFDELSPALIISALEYAAQVG-TSIFFDPGPRGKSLSS-GTPEEQRALS-YFLSTSDVLLLTSDEAESLT 309 (374)
Q Consensus 233 ~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g-~~v~~D~~~~~~~~~~-~~~~~~~~~~-~ll~~~Dil~~N~~Ea~~l~ 309 (374)
+.+.+.++ + -.+.+.+..+.+.+++.+ .++++||......-.. -.++..+.+. .+++++|++++|..|++.|+
T Consensus 74 ~~~aikiG-~---l~s~~~i~~i~~~l~~~~~~~vV~DPV~~~~~g~~~l~~~~~~~l~~~L~~~advitpN~~Ea~~L~ 149 (270)
T PRK12616 74 GVDAMKTG-M---LPTVDIIELAADTIKEKQLKNVVIDPVMVCKGANEVLYPEHAEALREQLAPLATVITPNLFEAGQLS 149 (270)
T ss_pred CCCEEEEC-C---CCCHHHHHHHHHHHHhcCCCCEEEccceecCCCCcccCHHHHHHHHHHhhccceEecCCHHHHHHHc
Confidence 35777774 3 235677778888888776 4699999864210000 0133334444 48889999999999999999
Q ss_pred CCC------CHHHHHHHHHHcCCCccEEEEEcCCCce------EEEeCCceEEecCceeeeecccchhhhhcCCC
Q 017305 310 GLR------NPITAGQELLRKGLRTKWVVVKMGPRGS------ILVTKSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 310 g~~------~~~~~~~~l~~~g~~~~~vvvT~G~~Ga------~~~~~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
|.+ +..++++.+.+.|+ +.||||.|.+|. +++++++.++++.++++++|++|+||+|.+++
T Consensus 150 g~~~~~~~~~~~~aa~~l~~~G~--~~VvVt~G~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~t~GaGD~fsaal 222 (270)
T PRK12616 150 GMGEIKTVEQMKEAAKKIHELGA--QYVVITGGGKLKHEKAVDVLYDGETAEVLESEMIDTPYTHGAGCTFSAAV 222 (270)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCC--CEEEEeCCCCCcCCceEEEEEECCeEEEEEeeeeCCCCCCcHHHHHHHHH
Confidence 852 34578888888887 789999998862 55666666778888889999999999997764
No 63
>PTZ00344 pyridoxal kinase; Provisional
Probab=99.18 E-value=2.2e-10 Score=107.00 Aligned_cols=130 Identities=14% Similarity=0.088 Sum_probs=87.3
Q ss_pred EEEEecCCCCCCCHHHHHH---HHHHHHhcC--CeEEEcCCCCCC-CCCCCChHHHHHHHhhhccCcEEecCHHHHHHhh
Q 017305 236 VLFCNGYGFDELSPALIIS---ALEYAAQVG--TSIFFDPGPRGK-SLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLT 309 (374)
Q Consensus 236 ~v~~~g~~~~~~~~~~~~~---~~~~a~~~g--~~v~~D~~~~~~-~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~ 309 (374)
.++++||..+ .+.+.. +++.+++.+ +.+++||....+ .+|. .+...+.+.++++++|++++|++|++.|+
T Consensus 79 ~~v~sG~l~~---~~~~~~i~~~l~~~~~~~~~~~vv~DPv~~~~g~l~~-~~~~~~~~~~ll~~~dii~pN~~E~~~L~ 154 (296)
T PTZ00344 79 TYVLTGYINS---ADILREVLATVKEIKELRPKLIFLCDPVMGDDGKLYV-KEEVVDAYRELIPYADVITPNQFEASLLS 154 (296)
T ss_pred CEEEECCCCC---HHHHHHHHHHHHHHHHhCCCceEEECCccccCCceEe-CHHHHHHHHHHhhhCCEEeCCHHHHHHHh
Confidence 4556677543 444444 444445554 479999774221 2342 35566777889999999999999999999
Q ss_pred CCC--C---HHHHHHHHHHcCCCccEEEEE---cCCCc----eEEEeC------CceEEecCceeeeecccchhhhhcCC
Q 017305 310 GLR--N---PITAGQELLRKGLRTKWVVVK---MGPRG----SILVTK------SSISCAPAFKVLQLQWVVVLVGMWQP 371 (374)
Q Consensus 310 g~~--~---~~~~~~~l~~~g~~~~~vvvT---~G~~G----a~~~~~------~~~~~~pa~~v~vVDttGagdaf~~G 371 (374)
|.+ + ..++++.+.+.|+ +.|||| +|.+| +++... ++.+.+..++++ ++++|+||+|.++
T Consensus 155 g~~~~~~~~~~~~~~~l~~~g~--~~VvVTg~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~GaGD~f~A~ 231 (296)
T PTZ00344 155 GVEVKDLSDALEAIDWFHEQGI--PVVVITSFREDEDPTHLRFLLSCRDKDTKNNKRFTGKVPYIE-GRYTGTGDLFAAL 231 (296)
T ss_pred CCCCCCHHHHHHHHHHHHHhCC--CEEEEEeecCCCCCCcEEEEEEeccccCCCceeEEEeccccC-CCCCCchHHHHHH
Confidence 963 2 3457788888876 789999 66666 444421 234555555555 5779999999876
Q ss_pred C
Q 017305 372 W 372 (374)
Q Consensus 372 ~ 372 (374)
+
T Consensus 232 ~ 232 (296)
T PTZ00344 232 L 232 (296)
T ss_pred H
Confidence 4
No 64
>PTZ00347 phosphomethylpyrimidine kinase; Provisional
Probab=99.08 E-value=8.6e-10 Score=110.42 Aligned_cols=139 Identities=14% Similarity=0.140 Sum_probs=93.6
Q ss_pred HHhhccCCcEEEE-ecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCC---CCCCCCC--hHHHHHH-HhhhccCcEEe
Q 017305 227 VKTAIKHSKVLFC-NGYGFDELSPALIISALEYAAQVGTSIFFDPGPRG---KSLSSGT--PEEQRAL-SYFLSTSDVLL 299 (374)
Q Consensus 227 ~~~~l~~~~~v~~-~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~---~~~~~~~--~~~~~~~-~~ll~~~Dil~ 299 (374)
+...+.+.++..+ .|+. .+.+.+..+++.++ +.++++||.... ..++... +...+.+ .++++++|+++
T Consensus 291 l~~l~~d~~~~~Ik~G~l---~s~e~i~~i~~~l~--~~~vV~DPV~~~~~G~~l~~~~~~~~~~~~~~~~Ll~~advit 365 (504)
T PTZ00347 291 IDSVMSDFNISVVKLGLV---PTARQLEIVIEKLK--NLPMVVDPVLVATSGDDLVAQKNADDVLAMYKERIFPMATIIT 365 (504)
T ss_pred HHHHHhCCCCCEEEECCc---CCHHHHHHHHHHhc--CCCEEEcccceeCCCCcccchhHHHHHHHHHHHhccCcceEEe
Confidence 3334444444332 4543 24677777777664 678999987532 1122110 1112222 36889999999
Q ss_pred cCHHHHHHhhCCC------CHHHHHHHHHHcCCCccEEEEEcCCCc-------eEEEeC--CceEEecCceeeeecccch
Q 017305 300 LTSDEAESLTGLR------NPITAGQELLRKGLRTKWVVVKMGPRG-------SILVTK--SSISCAPAFKVLQLQWVVV 364 (374)
Q Consensus 300 ~N~~Ea~~l~g~~------~~~~~~~~l~~~g~~~~~vvvT~G~~G-------a~~~~~--~~~~~~pa~~v~vVDttGa 364 (374)
||..|++.|+|.. +..++++.+.+.|+ +.||||.|.+| .+++.+ ++.++++.++++++|++|+
T Consensus 366 PN~~Ea~~L~g~~~~~~~~~~~~aa~~l~~~G~--~~VvVtgg~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~Ga 443 (504)
T PTZ00347 366 PNIPEAERILGRKEITGVYEARAAAQALAQYGS--RYVLVKGGHDLIDPEACRDVLYDREKDRFYEFTANRIATINTHGT 443 (504)
T ss_pred CCHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC--CEEEEeCCCCCcCCCcceEEEEcCCCCeEEEEEeeeECCCCCCCh
Confidence 9999999999963 34577788888877 78999999963 344443 3567788888899999999
Q ss_pred hhhhcCCC
Q 017305 365 LVGMWQPW 372 (374)
Q Consensus 365 gdaf~~G~ 372 (374)
||+|.+++
T Consensus 444 GD~fsaai 451 (504)
T PTZ00347 444 GCTLASAI 451 (504)
T ss_pred HHHHHHHH
Confidence 99997764
No 65
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=98.95 E-value=9.7e-09 Score=102.84 Aligned_cols=134 Identities=16% Similarity=0.101 Sum_probs=95.8
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCe-EEEcCCCCCCCCCC-CChHHHHHH-HhhhccCcEEecCHHHHHHhh
Q 017305 233 HSKVLFCNGYGFDELSPALIISALEYAAQVGTS-IFFDPGPRGKSLSS-GTPEEQRAL-SYFLSTSDVLLLTSDEAESLT 309 (374)
Q Consensus 233 ~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~-v~~D~~~~~~~~~~-~~~~~~~~~-~~ll~~~Dil~~N~~Ea~~l~ 309 (374)
+.+.+.++ +. .+.+.+..+++.+++.+.. +++||......-.. ..++..+.+ ..+++++|+++||..|++.|+
T Consensus 78 ~~~aik~G-~l---~~~~~i~~i~~~l~~~~~~~vVlDPV~~~~~G~~l~~~~~~~~l~~~Ll~~adiitPN~~Ea~~L~ 153 (502)
T PLN02898 78 PVDVVKTG-ML---PSAEIVKVLCQALKEFPVKALVVDPVMVSTSGDVLAGPSILSALREELLPLATIVTPNVKEASALL 153 (502)
T ss_pred CCCEEEEC-Cc---CCHHHHHHHHHHHHhCCCCCEEEccccccCCCCccCCHHHHHHHHHhhhccCeEEcCCHHHHHHHh
Confidence 35667663 32 2477888888888887775 99999642211000 123333444 468899999999999999999
Q ss_pred CCC------CHHHHHHHHHHcCCCccEEEEEcCCCc------eEEEeCCceEEecCceeeeecccchhhhhcCCC
Q 017305 310 GLR------NPITAGQELLRKGLRTKWVVVKMGPRG------SILVTKSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 310 g~~------~~~~~~~~l~~~g~~~~~vvvT~G~~G------a~~~~~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
|.. +..++++.|.+.|+ +.||||.|..+ .+++++++.++++.++++.+|++|+||+|.+++
T Consensus 154 g~~~~~~~~~~~~~a~~l~~~G~--~~VvItgg~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~t~GaGD~fsaai 226 (502)
T PLN02898 154 GGDPLETVADMRSAAKELHKLGP--RYVLVKGGHLPDSLDAVDVLYDGTEFHELRSSRIKTRNTHGTGCTLASCI 226 (502)
T ss_pred CCCCCCCHHHHHHHHHHHHhcCC--CEEEEcCCCCCCCCcceEEEEcCCeEEEEecceeCCCCCCchhhhHHHHH
Confidence 842 34677888888886 78999999753 355665666778888889999999999987654
No 66
>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz. A reaction that allows cells to recycle Thz into the thiamine biosynthesis pathway, as an alternative to its synthesis from cysteine, tyrosine and 1-deoxy-D-xylulose-5-phosphate.
Probab=98.86 E-value=3.4e-08 Score=89.33 Aligned_cols=138 Identities=19% Similarity=0.143 Sum_probs=92.0
Q ss_pred cHHHHhhccCCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcc--CcEEecC
Q 017305 224 SAEVKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLST--SDVLLLT 301 (374)
Q Consensus 224 ~~~~~~~l~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~--~Dil~~N 301 (374)
.+...+.++++|++++.--.+.+...+.+..+++.+++.+.++++||..... + ....+.+.+++.. +|+++||
T Consensus 40 ~e~~~~~l~~~d~vvi~~G~l~~~~~~~i~~~~~~~~~~~~pvVlDp~~~~~--~---~~~~~~~~~ll~~~~~~ilTPN 114 (242)
T cd01170 40 PEEVEELAKIAGALVINIGTLTSEQIEAMLKAGKAANQLGKPVVLDPVGVGA--T---SFRTEVAKELLAEGQPTVIRGN 114 (242)
T ss_pred HHHHHHHHHHcCcEEEeCCCCChHHHHHHHHHHHHHHhcCCCEEEcccccCc--c---hhHHHHHHHHHhcCCCeEEcCC
Confidence 3555667888999988532222223455666666788889999999975421 1 1111233455554 9999999
Q ss_pred HHHHHHhhCCC--------------CHHHHHHHHHHcCCCccEEEEEcCCCceEEEeCCceEEecCceeeeecccchhhh
Q 017305 302 SDEAESLTGLR--------------NPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQWVVVLVG 367 (374)
Q Consensus 302 ~~Ea~~l~g~~--------------~~~~~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDttGagda 367 (374)
..|+..|+|.. +..++++++.+++. ..|++| |.... ++++++.++++..+..+.++.|.||.
T Consensus 115 ~~Ea~~L~g~~~~~~~~~~~~~~~~~~~~aa~~l~~~~~--~~Vllk-G~~d~-l~~~~~~~~~~~~~~~~~~v~GtGdt 190 (242)
T cd01170 115 ASEIAALAGLTGLGKGVDSSSSDEEDALELAKALARKYG--AVVVVT-GEVDY-ITDGERVVVVKNGHPLLTKITGTGCL 190 (242)
T ss_pred HHHHHHHhCCCCCcCcccCCCcchHHHHHHHHHHHHHhC--CEEEEE-CCCcE-EEECCEEEEEeCCCccccCCCchHHH
Confidence 99999999842 24567788887763 468899 76665 55667778887655555666787777
Q ss_pred hcC
Q 017305 368 MWQ 370 (374)
Q Consensus 368 f~~ 370 (374)
|.+
T Consensus 191 La~ 193 (242)
T cd01170 191 LGA 193 (242)
T ss_pred HHH
Confidence 653
No 67
>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional
Probab=98.85 E-value=3.4e-08 Score=99.47 Aligned_cols=131 Identities=16% Similarity=0.119 Sum_probs=88.6
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHHhc-CCeEEEcCCCCCC---CCCCCChHHHHHHHhhhccCcEEecCHHHHHHhh
Q 017305 234 SKVLFCNGYGFDELSPALIISALEYAAQV-GTSIFFDPGPRGK---SLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLT 309 (374)
Q Consensus 234 ~~~v~~~g~~~~~~~~~~~~~~~~~a~~~-g~~v~~D~~~~~~---~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~ 309 (374)
.+.+.+ |+.. +.+.+..+.+..++. +..|++||..... .++ +++..+.+.++++++|++++|..|++.|+
T Consensus 99 ~~aiki-G~l~---s~~~i~~v~~~l~~~~~~~vVlDPv~~~~~G~~l~--~~~~~~~~~~Ll~~advItPN~~Ea~~Lt 172 (530)
T PRK14713 99 VDAVKI-GMLG---DAEVIDAVRTWLAEHRPPVVVLDPVMVATSGDRLL--EEDAEAALRELVPRADLITPNLPELAVLL 172 (530)
T ss_pred CCEEEE-CCcC---CHHHHHHHHHHHHhCCCCCEEECCcccCCCCCCCC--CHHHHHHHHHHhhhhheecCChHHHHHHh
Confidence 566766 4322 344444444444443 3468999976421 122 34556677789999999999999999999
Q ss_pred CCC---C---HHHHHHHHHHcCCCccEEEEEcCCCc-----eEEEe-CCceEEecCceeeeecccchhhhhcCCC
Q 017305 310 GLR---N---PITAGQELLRKGLRTKWVVVKMGPRG-----SILVT-KSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 310 g~~---~---~~~~~~~l~~~g~~~~~vvvT~G~~G-----a~~~~-~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
|.+ + ..++++.+.+.+. +.||||.|..+ .+++. +++.++++..+++++||+|+||+|.+++
T Consensus 173 g~~~~~~~~d~~~aa~~L~~~~g--~~VvItgG~~~~~~~~d~~~~~~~~~~~~~~~~v~~~~t~GaGD~fsaal 245 (530)
T PRK14713 173 GEPPATTWEEALAQARRLAAETG--TTVLVKGGHLDGQRAPDALVGPDGAVTEVPGPRVDTRNTHGTGCSLSSAL 245 (530)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcC--CEEEEeCCCCCCCcceEEEEcCCCeEEEEeeeeeCCCCCCcHHHHHHHHH
Confidence 853 2 3355777876654 57999988642 33443 4446778888899999999999987653
No 68
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=98.84 E-value=2.4e-08 Score=91.18 Aligned_cols=126 Identities=15% Similarity=0.025 Sum_probs=88.4
Q ss_pred hhccCCcEEEEecCCCCCCCH-HHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHH
Q 017305 229 TAIKHSKVLFCNGYGFDELSP-ALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAES 307 (374)
Q Consensus 229 ~~l~~~~~v~~~g~~~~~~~~-~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~ 307 (374)
..+.+.+++++++. +.. +.+..+++.+++++.++++|+.... +..... . ..+.+.+++++||..|++.
T Consensus 73 ~~~~~~d~v~ig~g----l~~~~~~~~i~~~~~~~~~pvVlDa~~~~--~~~~~~----~-~~~~~~~~iltPn~~E~~~ 141 (254)
T cd01171 73 ELLERADAVVIGPG----LGRDEEAAEILEKALAKDKPLVLDADALN--LLADEP----S-LIKRYGPVVLTPHPGEFAR 141 (254)
T ss_pred hhhccCCEEEEecC----CCCCHHHHHHHHHHHhcCCCEEEEcHHHH--HhhcCh----h-hhccCCCEEECCCHHHHHH
Confidence 34567899998642 222 6788888888888999999987432 100000 0 0245679999999999999
Q ss_pred hhCCC------CHHHHHHHHHHcCCCccEEEEEcCCCceEEEeCCceEEecCceeeeecccchhhhhc
Q 017305 308 LTGLR------NPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQWVVVLVGMW 369 (374)
Q Consensus 308 l~g~~------~~~~~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDttGagdaf~ 369 (374)
|+|.. +..++++.+.+++ ..+||..|. +.+++++++.++++....+.++|+|+||.|.
T Consensus 142 L~g~~~~~~~~~~~~~a~~l~~~~---~~~vvlkG~-~~~i~~~~~~~~~~~~~~~~~~~~GaGD~la 205 (254)
T cd01171 142 LLGALVEEIQADRLAAAREAAAKL---GATVVLKGA-VTVIADPDGRVYVNPTGNPGLATGGSGDVLA 205 (254)
T ss_pred HhCCChhhhhhHHHHHHHHHHHHc---CcEEEEcCC-CCEEECCCCcEEEECCCCcccccCchHHHHH
Confidence 99853 2346778888875 345666674 6666766555667777788999999999873
No 69
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=98.82 E-value=3.4e-08 Score=103.25 Aligned_cols=131 Identities=15% Similarity=0.076 Sum_probs=94.4
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHHhc-CCeEEEcCCCCCC---CCCCCChHHHHHHHhhhccCcEEecCHHHHHHhh
Q 017305 234 SKVLFCNGYGFDELSPALIISALEYAAQV-GTSIFFDPGPRGK---SLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLT 309 (374)
Q Consensus 234 ~~~v~~~g~~~~~~~~~~~~~~~~~a~~~-g~~v~~D~~~~~~---~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~ 309 (374)
.+.+-++ + -.+.+.+..+++.+++. +.+|++||..... .++ .++..+.+.++++.+|+|+||..|++.|+
T Consensus 311 ~~aiKiG-m---L~s~e~v~~i~~~l~~~~~~~vVlDPV~~~~sG~~l~--~~~~~~~l~~Llp~adlItPN~~Ea~~L~ 384 (755)
T PRK09517 311 VDAVKLG-M---LGSADTVDLVASWLGSHEHGPVVLDPVMVATSGDRLL--DADATEALRRLAVHVDVVTPNIPELAVLC 384 (755)
T ss_pred CCEEEEC-C---CCCHHHHHHHHHHHHhCCCCCEEEecccccCCCCCCC--CHHHHHHHHHHhCcccCccCCHHHHHHHh
Confidence 4667664 2 23467777888888774 4679999975321 122 23344556679999999999999999999
Q ss_pred CCC---C---HHHHHHHHHHcCCCccEEEEEcCC------CceEEEeCCceEEecCceeeeecccchhhhhcCCC
Q 017305 310 GLR---N---PITAGQELLRKGLRTKWVVVKMGP------RGSILVTKSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 310 g~~---~---~~~~~~~l~~~g~~~~~vvvT~G~------~Ga~~~~~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
|.. + ..++++.+.+.+. ..||||.|. .|+++..++..++++.++++++||+|+||+|.+++
T Consensus 385 g~~~~~~~~d~~~aa~~L~~~~g--~~VVVkgGh~~~~~~~~~l~~~~~~~~~~~~~~v~~~~t~GaGDtfsaai 457 (755)
T PRK09517 385 GEAPAITMDEAIAQARGFARTHG--TIVIVKGGHLTGDLADNAVVRPDGSVHQVENPRVNTTNSHGTGCSLSAAL 457 (755)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcC--CEEEEcCCcCCCCccceEEEeCCCeEEEEeecccCCCCCcChHHHHHHHH
Confidence 842 2 3456777877543 479999983 57776655557788989999999999999987754
No 70
>PLN02978 pyridoxal kinase
Probab=98.81 E-value=4.5e-08 Score=91.79 Aligned_cols=132 Identities=19% Similarity=0.089 Sum_probs=88.0
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHHh--cCCeEEEcCCCCCC-CCCCCChHHHHHHH-hhhccCcEEecCHHHHHHhh
Q 017305 234 SKVLFCNGYGFDELSPALIISALEYAAQ--VGTSIFFDPGPRGK-SLSSGTPEEQRALS-YFLSTSDVLLLTSDEAESLT 309 (374)
Q Consensus 234 ~~~v~~~g~~~~~~~~~~~~~~~~~a~~--~g~~v~~D~~~~~~-~~~~~~~~~~~~~~-~ll~~~Dil~~N~~Ea~~l~ 309 (374)
.+.+.+ ||..+....+.+.++++.+++ .++.+++||..... .+| ..++..+.+. .+++++|++++|+.|++.|+
T Consensus 87 ~~ai~~-G~l~s~~~~~~v~~~l~~~~~~~~~~~vvlDPvm~d~G~l~-~~~~~~~~~~~~ll~~adiitPN~~Ea~~L~ 164 (308)
T PLN02978 87 YTHLLT-GYIGSVSFLRTVLRVVKKLRSVNPNLTYVCDPVLGDEGKLY-VPPELVPVYREKVVPLATMLTPNQFEAEQLT 164 (308)
T ss_pred cCEEEe-cccCCHHHHHHHHHHHHHHHHhCCCCeEEECCcccCCCCcc-CChhHHHHHHHHHHhhCCeeccCHHHHHHHh
Confidence 566654 554334445677778887776 45778999986431 133 2334445554 59999999999999999999
Q ss_pred CCC-----CHHHHHHHHHHcCCCccEEEEEcCC-CceEEEeC---------CceEEecCceeeeecccchhhhhcC
Q 017305 310 GLR-----NPITAGQELLRKGLRTKWVVVKMGP-RGSILVTK---------SSISCAPAFKVLQLQWVVVLVGMWQ 370 (374)
Q Consensus 310 g~~-----~~~~~~~~l~~~g~~~~~vvvT~G~-~Ga~~~~~---------~~~~~~pa~~v~vVDttGagdaf~~ 370 (374)
|.+ +..++++.+.+.|+ +.||||-+. +|.+.... ++.+++..++++.. ++|.||.|.+
T Consensus 165 g~~~~~~~~~~~a~~~l~~~g~--~~VVITs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~GtGD~fsA 237 (308)
T PLN02978 165 GIRIVTEEDAREACAILHAAGP--SKVVITSIDIDGKLLLVGSHRKEKGARPEQFKIVIPKIPAY-FTGTGDLMAA 237 (308)
T ss_pred CCCCCCHHHHHHHHHHHHHhCC--CEEEEEEecCCCCEEEEEecccccCCCCceEEEEccCCCCC-CCCchHHHHH
Confidence 963 34577888888876 789988754 34432211 34566666666655 4899988865
No 71
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2.7.4.7 from EC is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 2DDW_B 2DDO_B 2DDM_A 3IBQ_A 3H74_A 3HYO_A 1UB0_A 1VI9_D 1TD2_B 2PHP_D ....
Probab=98.65 E-value=2.9e-07 Score=83.55 Aligned_cols=131 Identities=18% Similarity=0.140 Sum_probs=83.5
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCC-CCCCChHHHHHHHh-hhccCcEEecCHHHHHHhhC
Q 017305 233 HSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKS-LSSGTPEEQRALSY-FLSTSDVLLLTSDEAESLTG 310 (374)
Q Consensus 233 ~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~-~~~~~~~~~~~~~~-ll~~~Dil~~N~~Ea~~l~g 310 (374)
+.+.+.++ |. .+.+.+..+.+..++.+.++++||--.... .....++..+.+.+ +++++|+++||..|++.|+|
T Consensus 60 ~~~aikiG-~l---~~~~~v~~i~~~l~~~~~~vV~DPVm~~~~g~~~~~~~~~~~~~~~Llp~AdiitPN~~Ea~~L~g 135 (246)
T PF08543_consen 60 KFDAIKIG-YL---GSAEQVEIIADFLKKPKIPVVLDPVMGDSGGYYYVDPDVVEAMREELLPLADIITPNLTEAELLTG 135 (246)
T ss_dssp C-SEEEE--S----SSHHHHHHHHHHHHHTTTEEEEE---EETTTECTSSHHHHHHHHHHCGGG-SEEE-BHHHHHHHHT
T ss_pred cccEEEEc-cc---CCchhhhhHHHHHhccCCCEEEecccccCCCCcCCCHHHHHHHHhccCCcCeEEeCCHHHHHHHhC
Confidence 67888774 32 345666666776677788999999643110 11123445555555 99999999999999999999
Q ss_pred CC-----CHHHHHHHHHHcCCCccEEEEEcCCC----c---eEEEeCCceEEecCceeeeecccchhhhhc
Q 017305 311 LR-----NPITAGQELLRKGLRTKWVVVKMGPR----G---SILVTKSSISCAPAFKVLQLQWVVVLVGMW 369 (374)
Q Consensus 311 ~~-----~~~~~~~~l~~~g~~~~~vvvT~G~~----G---a~~~~~~~~~~~pa~~v~vVDttGagdaf~ 369 (374)
.+ +..+++++|+++|+ +.||||-+.. + -+++.+++.+.+..++.+..+..|.||.|.
T Consensus 136 ~~i~~~~~~~~~~~~l~~~G~--~~VvItg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~GTGd~fs 204 (246)
T PF08543_consen 136 REINSEEDIEEAAKALLALGP--KNVVITGGHLDGDEGIITDVLYDGGEFYWLSSPRIPTGSFHGTGDLFS 204 (246)
T ss_dssp S--SSHHHHHHHHHHHHHTS---SEEEEEEEEGGSSCEEEEEEEETTSEEEEEEEEEECTSGCTTHHHHHH
T ss_pred CCCCChHhHHHHHHHHHHhCC--ceEEEeeeccccccccccceeeeccceeecceeEEcCCCCCCchhHHH
Confidence 43 46788999999987 8899998762 2 334455666666666555466777665553
No 72
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=98.58 E-value=4.3e-07 Score=83.76 Aligned_cols=126 Identities=15% Similarity=0.030 Sum_probs=86.4
Q ss_pred HHhhccCCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHH
Q 017305 227 VKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAE 306 (374)
Q Consensus 227 ~~~~l~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~ 306 (374)
+.+.+..++++.+++.... .+.+.++++.+++.+.++++|+.... + .+........+++++||..|++
T Consensus 86 ~~~~~~~~davvig~Gl~~---~~~~~~l~~~~~~~~~pvVlDa~g~~--l-------~~~~~~~~~~~~vItPN~~El~ 153 (272)
T TIGR00196 86 DEELLERYDVVVIGPGLGQ---DPSFKKAVEEVLELDKPVVLDADALN--L-------LTYDKPKREGEVILTPHPGEFK 153 (272)
T ss_pred HHhhhccCCEEEEcCCCCC---CHHHHHHHHHHHhcCCCEEEEhHHHH--H-------HhhcccccCCCEEECCCHHHHH
Confidence 3445678899999753221 23377788888888999999986421 1 1111001336899999999999
Q ss_pred HhhCCC-----CHHHHHHHHHHcCCCccEEEEEcCCCceEEEeCCceEEecCceeeeecccchhhhh
Q 017305 307 SLTGLR-----NPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQWVVVLVGM 368 (374)
Q Consensus 307 ~l~g~~-----~~~~~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDttGagdaf 368 (374)
.|+|.. +..++++++.+++ ..+|++.|..+.++..++..+.. ..+..+.+++|.||.+
T Consensus 154 ~L~g~~~~~~~~~~~aa~~l~~~~---~~vVv~kG~~~~i~~~~~~~~~~-~~~~~~~~~~GaGD~l 216 (272)
T TIGR00196 154 RLLGLVNEIQGDRLEAAQDIAQKL---QAVVVLKGAADVIAAPDGDLWIN-KTGNAALAKGGTGDVL 216 (272)
T ss_pred HHhCCchhhhhhHHHHHHHHHHHh---CCEEEEcCCCCEEEcCCCeEEEE-CCCCCccCCCCchHHH
Confidence 999853 3557778888864 45888899999876644455543 4456778899988884
No 73
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=98.48 E-value=3e-06 Score=76.14 Aligned_cols=130 Identities=22% Similarity=0.135 Sum_probs=91.7
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHHhcC-CeEEEcCCCCCCCCCC-CChHHHHHH-HhhhccCcEEecCHHHHHHhhC
Q 017305 234 SKVLFCNGYGFDELSPALIISALEYAAQVG-TSIFFDPGPRGKSLSS-GTPEEQRAL-SYFLSTSDVLLLTSDEAESLTG 310 (374)
Q Consensus 234 ~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g-~~v~~D~~~~~~~~~~-~~~~~~~~~-~~ll~~~Dil~~N~~Ea~~l~g 310 (374)
.+.+=++ .-.+.+.++.+.+..++++ .++++||--..+.-.. ..++..+.+ ++++++++++.||..|++.|+|
T Consensus 73 v~avKtG----ML~~~eiie~va~~l~~~~~~~vV~DPVmvaksG~~Ll~~~a~~~l~~~LlP~a~vvTPNl~EA~~L~g 148 (263)
T COG0351 73 VDAVKTG----MLGSAEIIEVVAEKLKKYGIGPVVLDPVMVAKSGDPLLDEEAVEALREELLPLATVVTPNLPEAEALSG 148 (263)
T ss_pred CCEEEEC----CcCCHHHHHHHHHHHHhcCCCcEEECceEEEcCCCcccChHHHHHHHHHhhccCeEecCCHHHHHHHcC
Confidence 4566663 3345788888888888888 7799999643221000 123444444 5899999999999999999999
Q ss_pred C-C-----CHHHHHHHHHHcCCCccEEEEEcCCCc----eEEEeCCceEEecCceeeeecccchhhhhc
Q 017305 311 L-R-----NPITAGQELLRKGLRTKWVVVKMGPRG----SILVTKSSISCAPAFKVLQLQWVVVLVGMW 369 (374)
Q Consensus 311 ~-~-----~~~~~~~~l~~~g~~~~~vvvT~G~~G----a~~~~~~~~~~~pa~~v~vVDttGagdaf~ 369 (374)
. . +..++++.+.+.|+ +.|+||-|... -++|+++..+.+..+.++--+|-|.|..|.
T Consensus 149 ~~~i~~~~d~~~a~~~i~~~g~--~~VliKGGH~~~~~~D~l~~~~~~~~f~~~ri~t~~tHGTGCTlS 215 (263)
T COG0351 149 LPKIKTEEDMKEAAKLLHELGA--KAVLIKGGHLEGEAVDVLYDGGSFYTFEAPRIPTKNTHGTGCTLS 215 (263)
T ss_pred CCccCCHHHHHHHHHHHHHhCC--CEEEEcCCCCCCCceeEEEcCCceEEEeccccCCCCCCCccHHHH
Confidence 4 2 45667777788887 89999987643 245556667778888888888888555543
No 74
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=98.47 E-value=1.2e-06 Score=79.02 Aligned_cols=123 Identities=20% Similarity=0.212 Sum_probs=81.0
Q ss_pred hhhcccHHHHh--hccCCcEEEEecCCCCCCCHHHHHHHHHHHHhcC--CeEEEcCCCCC-CCCCCCChHHHHHH-Hhhh
Q 017305 219 WMNKLSAEVKT--AIKHSKVLFCNGYGFDELSPALIISALEYAAQVG--TSIFFDPGPRG-KSLSSGTPEEQRAL-SYFL 292 (374)
Q Consensus 219 ~~~~l~~~~~~--~l~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g--~~v~~D~~~~~-~~~~~~~~~~~~~~-~~ll 292 (374)
++..+-+.+.+ .+.++|.|+ +||..+....+.+..+++..|+.+ ..+++||--.. ..+... ++..+.+ .+++
T Consensus 57 ~l~~~l~~l~~~~~~~~~davl-tGYlgs~~qv~~i~~~v~~vk~~~P~~~~l~DPVMGD~gglYV~-~~~~~~~~~~li 134 (281)
T COG2240 57 QLADLLNGLEAIDKLGECDAVL-TGYLGSAEQVRAIAGIVKAVKEANPNALYLCDPVMGDPGGLYVA-PEVAEAYRDELL 134 (281)
T ss_pred HHHHHHHHHHhcccccccCEEE-EccCCCHHHHHHHHHHHHHHhccCCCeEEEeCCcccCCCceeec-cchHHHHHHhhc
Confidence 34444444443 677899885 477544444566777777777764 44888986321 112211 2223333 4799
Q ss_pred ccCcEEecCHHHHHHhhCCC-----CHHHHHHHHHHcCCCccEEEEEcCC-----CceEEEeC
Q 017305 293 STSDVLLLTSDEAESLTGLR-----NPITAGQELLRKGLRTKWVVVKMGP-----RGSILVTK 345 (374)
Q Consensus 293 ~~~Dil~~N~~Ea~~l~g~~-----~~~~~~~~l~~~g~~~~~vvvT~G~-----~Ga~~~~~ 345 (374)
+.+|++.||..|++.|+|.. +..++++.|.+.|+ +.|+||.=. -|.+++..
T Consensus 135 p~AdiiTPN~fELe~Ltg~~~~~~~da~~aa~~L~~~gp--~~vlVTS~~~~~~~~~~~~~~~ 195 (281)
T COG2240 135 PLADIITPNIFELEILTGKPLNTLDDAVKAARKLGADGP--KIVLVTSLSRAGMSTGNFEMLG 195 (281)
T ss_pred chhhEeCCCHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC--CEEEEecccccCCCCceEEEec
Confidence 99999999999999999973 56788888988888 889999633 34555543
No 75
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=98.27 E-value=1.4e-05 Score=73.35 Aligned_cols=133 Identities=18% Similarity=0.160 Sum_probs=81.8
Q ss_pred HHHHhhccCCcEEEEecCCCCCCCHH---HHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhc--cCcEEe
Q 017305 225 AEVKTAIKHSKVLFCNGYGFDELSPA---LIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLS--TSDVLL 299 (374)
Q Consensus 225 ~~~~~~l~~~~~v~~~g~~~~~~~~~---~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~--~~Dil~ 299 (374)
++..+.+..++.+++. .+ -...+ .+..+++.+++.+.++++||..... .... .+...++++ +.++|+
T Consensus 46 ~e~~~~~~~~~alvi~-~G--~l~~~~~~~i~~~~~~a~~~~~pvVlDpv~~~~--~~~~---~~~~~~ll~~~~~~vIt 117 (263)
T PRK09355 46 EEAEEMAKIAGALVIN-IG--TLTEERIEAMLAAGKIANEAGKPVVLDPVGVGA--TSYR---TEFALELLAEVKPAVIR 117 (263)
T ss_pred HHHHHHHHhcCceEEe-CC--CCCHHHHHHHHHHHHHHHhcCCCEEECCcccCc--chhh---HHHHHHHHHhcCCcEec
Confidence 4556667778888884 22 22333 3455556678889999999986431 1111 122233443 689999
Q ss_pred cCHHHHHHhhCCC-------------CHHHHHHHHHHcCCCccEEEEEcCCCceEEEeCCceEEecCceeeeecccchhh
Q 017305 300 LTSDEAESLTGLR-------------NPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQWVVVLV 366 (374)
Q Consensus 300 ~N~~Ea~~l~g~~-------------~~~~~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDttGagd 366 (374)
+|..|+..|+|.. +..++++.+.+++. ..|++| |..- +++++++.+.++.-.....+.+|.||
T Consensus 118 PN~~E~~~L~g~~~~~~~vd~~~~~~~~~~~a~~la~~~~--~~Vvvk-G~~d-~I~~~~~~~~~~~g~~~~~~v~GtGc 193 (263)
T PRK09355 118 GNASEIAALAGEAAETKGVDSTDGSADAVEIAKAAAKKYG--TVVVVT-GEVD-YITDGERVVSVHNGHPLMTKVTGTGC 193 (263)
T ss_pred CCHHHHHHHhCCCcccCCcCCCCCHHHHHHHHHHHHHHhC--CEEEEE-CCCc-EEEeCCEEEEEeCCCcccCCcccccH
Confidence 9999999999852 34567788888753 468888 4432 44455555666522223444578666
Q ss_pred hhc
Q 017305 367 GMW 369 (374)
Q Consensus 367 af~ 369 (374)
.|.
T Consensus 194 ~L~ 196 (263)
T PRK09355 194 LLS 196 (263)
T ss_pred HHH
Confidence 653
No 76
>TIGR00694 thiM hydroxyethylthiazole kinase. This model represents the hydoxyethylthiazole kinase, ThiM, of a number of bacteria, and C-terminal domains of bifunctional thiamine biosynthesis proteins of Saccharomyces cerevisiae and Schizosaccharomyces pombe, in which the N-terminal domain corresponds to the bacterial thiamine-phosphate pyrophosphorylase (EC 2.5.1.3), ThiE.
Probab=98.03 E-value=6.6e-05 Score=68.24 Aligned_cols=120 Identities=23% Similarity=0.206 Sum_probs=74.4
Q ss_pred cHHHHhhccCCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhc--cCcEEecC
Q 017305 224 SAEVKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLS--TSDVLLLT 301 (374)
Q Consensus 224 ~~~~~~~l~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~--~~Dil~~N 301 (374)
.++..+.+..++.+.+.--.+.....+.+..+++.+++.+.++++||...... ....+...++++ ++++|++|
T Consensus 40 ~~e~~~~~~~~~al~ik~G~l~~~~~~~i~~~~~~~~~~~~pvVlDPV~~~~s-----~~r~~~~~~Ll~~~~~~vITpN 114 (249)
T TIGR00694 40 EEEVAELAKIAGALVINIGTLDKESIEAMIAAGKSANELGVPVVLDPVGVGAT-----KFRTETALELLSEGRFAAIRGN 114 (249)
T ss_pred HHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHHHHHHhcCCCEEEcccccccc-----hhHHHHHHHHHhhcCCceeCCC
Confidence 35566667777887775321111113455666777778899999999865321 111123345665 47999999
Q ss_pred HHHHHHhhCCC-------------CHHHHHHHHHHcCCCccEEEEEcCCCceEEEeCCceEEec
Q 017305 302 SDEAESLTGLR-------------NPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAP 352 (374)
Q Consensus 302 ~~Ea~~l~g~~-------------~~~~~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~p 352 (374)
..|++.|+|.. +..++++.+.+++ + ..|++| |..- +++++++.+.+.
T Consensus 115 ~~E~~~L~g~~~~~~gvd~~~~~~d~~~~a~~la~~~-~-~~Vllk-G~~D-~i~~~~~~~~~~ 174 (249)
T TIGR00694 115 AGEIASLAGETGLMKGVDSGEGAADAIRAAQQAAQKY-G-TVVVIT-GEVD-YVSDGTSVYTIH 174 (249)
T ss_pred HHHHHHHhCCCCCCCCcCCccchHHHHHHHHHHHHHh-C-CEEEEE-CCCc-EEEeCCEEEEEC
Confidence 99999999843 3456788888774 2 467777 5433 445555555543
No 77
>PTZ00493 phosphomethylpyrimidine kinase; Provisional
Probab=97.66 E-value=0.00085 Score=62.84 Aligned_cols=97 Identities=15% Similarity=0.088 Sum_probs=62.7
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHHhcC------CeEEEcCCCCCC---CCCCCChHHHH-HHHhhhccCcEEecCHH
Q 017305 234 SKVLFCNGYGFDELSPALIISALEYAAQVG------TSIFFDPGPRGK---SLSSGTPEEQR-ALSYFLSTSDVLLLTSD 303 (374)
Q Consensus 234 ~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g------~~v~~D~~~~~~---~~~~~~~~~~~-~~~~ll~~~Dil~~N~~ 303 (374)
.+++=++ .-.+.+.+..+.+..++.+ .+|++||.-... .+.. +.+..+ ..+.+++++|++.||..
T Consensus 74 i~aIKiG----mL~s~e~i~~v~~~l~~~~~~~~~~~~vVlDPVl~sssG~~L~~-~~~~~~~~~~~Llp~a~viTPN~~ 148 (321)
T PTZ00493 74 IDVVKLG----VLYSKKIISLVHNYITNMNKKRGKKLLVVFDPVFVSSSGCLLVE-NLEYIKFALDLICPISCIITPNFY 148 (321)
T ss_pred CCEEEEC----CcCCHHHHHHHHHHHHHhcccccCCCeEEECCceEECCCCccCC-cHHHHHHHHHHhhccCEEECCCHH
Confidence 5677774 2234566666666555442 248999963221 1211 112223 33569999999999999
Q ss_pred HHHHhhC-----CC----CHHHHHHHHHH-cCCCccEEEEEcCC
Q 017305 304 EAESLTG-----LR----NPITAGQELLR-KGLRTKWVVVKMGP 337 (374)
Q Consensus 304 Ea~~l~g-----~~----~~~~~~~~l~~-~g~~~~~vvvT~G~ 337 (374)
|++.|+| .. +..++++.|++ .|+ +.|+||-|.
T Consensus 149 Ea~~L~g~~~~~~~~~~~~~~~aA~~l~~~~G~--~~VliKGGh 190 (321)
T PTZ00493 149 ECKVILEALDCQMDLSKANMTELCKLVTEKLNI--NACLFKSCN 190 (321)
T ss_pred HHHHHhCCCcccCCCCHHHHHHHHHHHHHhcCC--CEEEECcCC
Confidence 9999998 22 34678888886 576 889999776
No 78
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]
Probab=97.43 E-value=0.00055 Score=60.97 Aligned_cols=103 Identities=20% Similarity=0.174 Sum_probs=67.6
Q ss_pred ccCCcEEEEecCCCCCCCHHHHHHHHHHHHhcC--CeEEEcCCCCC-CCCCCCChHHHHHHHhh-hccCcEEecCHHHHH
Q 017305 231 IKHSKVLFCNGYGFDELSPALIISALEYAAQVG--TSIFFDPGPRG-KSLSSGTPEEQRALSYF-LSTSDVLLLTSDEAE 306 (374)
Q Consensus 231 l~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g--~~v~~D~~~~~-~~~~~~~~~~~~~~~~l-l~~~Dil~~N~~Ea~ 306 (374)
+..++.+ ++||..+...-..+.++.+..|+.+ ...++||.-.. ..+.. ..+.....+++ .+.+|++.||..|++
T Consensus 79 ~~~Y~~v-LTGY~~n~~~l~~i~~iv~~lk~~np~~~wv~DPVmGDnG~lYV-~eelipvYr~~i~~ladiiTPNqFE~E 156 (308)
T KOG2599|consen 79 LNKYDAV-LTGYLPNVSFLQKIADIVKKLKKKNPNLTWVCDPVMGDNGRLYV-PEELIPVYRDLIIPLADIITPNQFEAE 156 (308)
T ss_pred cccccee-eeeccCChhHHHHHHHHHHHHHhcCCCeEEEeCccccCCccEec-cHHHHHHHHHhhcchhhhcCCcchhhh
Confidence 4567776 5677654444566666666666654 45677885211 11211 12223333444 446999999999999
Q ss_pred HhhCCC-----CHHHHHHHHHHcCCCccEEEEEcCC
Q 017305 307 SLTGLR-----NPITAGQELLRKGLRTKWVVVKMGP 337 (374)
Q Consensus 307 ~l~g~~-----~~~~~~~~l~~~g~~~~~vvvT~G~ 337 (374)
.|+|.+ +..++++.|+++|+ +.||||...
T Consensus 157 iLtg~~I~t~eda~~a~~~lhq~~v--~~vVITS~~ 190 (308)
T KOG2599|consen 157 ILTGMEIRTEEDAKRAVEKLHQKGV--KTVVITSFD 190 (308)
T ss_pred hhcCCeeccHHHHHHHHHHHHHhCC--CEEEEEeee
Confidence 999974 56778889999997 789999754
No 79
>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium []. Five kinase activities have been implicated in TPP synthesis, which involves joining a 4-methyl-5-(beta-hydroxyethyl)thiazole (THZ) moiety and a 4-amino-5- hydroxymethyl-2-methylpyrimidine (HMP) moiety [, ]. THZ kinase (2.7.1.50 from EC) activity is involved in the salvage synthesis of TH-P from the thiazole: 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-4-methyl-5-(2-phosphonooxyethyl)-thiazole = pyrophosphate + thiamin monophosphate Hydroxyethylthiazole kinase expression is regulated at the mRNA level by intracellular thiamin pyrophosphate [].; GO: 0004417 hydroxyethylthiazole kinase activity, 0009228 thiamine biosynthetic process; PDB: 1EKK_A 1ESQ_C 1C3Q_B 1ESJ_A 1EKQ_B 3HPD_A 3DZV_A 3NL5_A 3NL2_A 3NM1_A ....
Probab=97.31 E-value=0.0032 Score=56.55 Aligned_cols=120 Identities=21% Similarity=0.195 Sum_probs=76.7
Q ss_pred HHHHhhccCCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhh--ccCcEEecCH
Q 017305 225 AEVKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFL--STSDVLLLTS 302 (374)
Q Consensus 225 ~~~~~~l~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll--~~~Dil~~N~ 302 (374)
++..+..+.++.++++--.+.+...+.+....+.|++.++++++||..... .+--.+...+++ .+.++|+.|.
T Consensus 41 ~E~~e~~~~a~al~iNiGTl~~~~~~~m~~A~~~A~~~~~PvVLDPVgvGa-----s~~R~~~~~~LL~~~~~~vIrGN~ 115 (246)
T PF02110_consen 41 EEVEEFASIADALVINIGTLTDERIEAMKKAAKAANELGIPVVLDPVGVGA-----SKFRTEFALELLNNYKPTVIRGNA 115 (246)
T ss_dssp TTHHHHHHCTSEEEEESTTSSHHHHHHHHHHHHHHHHTT--EEEE-TTBTT-----BHHHHHHHHHHHCHS--SEEEEEH
T ss_pred HHHHHHHHHcCEEEEECCCCCHhHHHHHHHHHHHHHHcCCCEEEeCcccCC-----cHHHHHHHHHHHHhCCCcEEEeCH
Confidence 455666777888888743222222467788888899999999999987642 122345567777 4689999999
Q ss_pred HHHHHhhCCC-------------CHHHHHHHHHHcCCCccEEEEEcCCCceEEEeCCceEEecC
Q 017305 303 DEAESLTGLR-------------NPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPA 353 (374)
Q Consensus 303 ~Ea~~l~g~~-------------~~~~~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa 353 (374)
.|...|.|.. +..+.++++.++. + .+|+-.|+.-.+. ++.+.+.++-
T Consensus 116 sEI~aLag~~~~~kGVDs~~~~~~~~~~a~~lA~k~-~--~vVvvTG~~D~Is-dg~~~~~i~n 175 (246)
T PF02110_consen 116 SEIAALAGEDSKAKGVDSGDSDEDAIEAAKQLAQKY-N--CVVVVTGEVDYIS-DGNRVYRIPN 175 (246)
T ss_dssp HHHHHHHTCCCCSCSSSSSCGSHHHHHHHHHHHHHT-T--SEEEEESSSEEEE-ESSCEEEECS
T ss_pred HHHHHHhCcCCCCCCcCcCCcchHHHHHHHHHHHhc-C--CEEEEecCCcEEE-CCCeEEEeCC
Confidence 9999998863 1357788888773 3 2444447766553 4555666554
No 80
>COG2145 ThiM Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism]
Probab=97.02 E-value=0.013 Score=52.28 Aligned_cols=118 Identities=20% Similarity=0.182 Sum_probs=78.1
Q ss_pred HHHHhhccCCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcc--CcEEecCH
Q 017305 225 AEVKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLST--SDVLLLTS 302 (374)
Q Consensus 225 ~~~~~~l~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~--~Dil~~N~ 302 (374)
++..+..+-++.++++--.+..-..+.+..+.+.|++.|.++++||..... .+--++...++|.+ .++|..|.
T Consensus 47 eE~~e~~kia~AL~INIGTL~~~~~~~m~~A~~~An~~~~PvvLDPVgvgA-----t~~R~~~~~~LL~~~~~~~IrGN~ 121 (265)
T COG2145 47 EEVEEFAKIADALLINIGTLSAERIQAMRAAIKAANESGKPVVLDPVGVGA-----TKFRTKFALELLAEVKPAAIRGNA 121 (265)
T ss_pred HHHHHHHHhccceEEeeccCChHHHHHHHHHHHHHHhcCCCEEecCccCCc-----hHHHHHHHHHHHHhcCCcEEeccH
Confidence 556666666777877654445555678888999999999999999986542 12224556777764 69999999
Q ss_pred HHHHHhhCCC-------------CHHHHHHHHHHcCCCccEEEEEcCCCceEEEeCCceEEe
Q 017305 303 DEAESLTGLR-------------NPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCA 351 (374)
Q Consensus 303 ~Ea~~l~g~~-------------~~~~~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~ 351 (374)
.|...|.|.. ++.++++.+.++. ..+|+-.|+.-.+. ++++.+.+
T Consensus 122 sEI~~Lag~~~~~kGVDa~~~~~~~~~~a~~~A~~~---~~vvvvTG~vD~Is-dg~~~~~i 179 (265)
T COG2145 122 SEIAALAGEAGGGKGVDAGDGAADAIEAAKKAAQKY---GTVVVVTGEVDYIS-DGTRVVVI 179 (265)
T ss_pred HHHHHHhcccccccccccccchhhHHHHHHHHHHHh---CcEEEEECCeeEEE-cCCeEEEE
Confidence 9999998653 3455666666553 23444446655433 34444444
No 81
>PRK14039 ADP-dependent glucokinase; Provisional
Probab=97.01 E-value=0.019 Score=56.01 Aligned_cols=79 Identities=13% Similarity=0.106 Sum_probs=50.6
Q ss_pred HhhccCCcEEEEecCCCC-C-CC-----HHHHHHHHH---HH--HhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccC
Q 017305 228 KTAIKHSKVLFCNGYGFD-E-LS-----PALIISALE---YA--AQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTS 295 (374)
Q Consensus 228 ~~~l~~~~~v~~~g~~~~-~-~~-----~~~~~~~~~---~a--~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~ 295 (374)
.+...++|.++++|+... + .+ .+.+.++.+ .. +..++++-+...+... ..-....+..+++++
T Consensus 205 ~e~~~~~D~avlSG~q~l~d~y~dg~~~~e~l~~~~~~i~~l~~~~~~i~iH~E~As~~~-----~~i~~~v~~~Ilp~V 279 (453)
T PRK14039 205 LEHAGEMDGALISGFHLLLETYPDGSTYREKLEDSLAQLKWWKSKNEKLRIHAELGHFAS-----KEIANSVFLILAGIV 279 (453)
T ss_pred HhhccCCCEEEEechhhhhhhcCCcccHHHHHHHHHHHHHHHHhcCCCceEEEEecCccc-----HHHHHHHHHHhhccc
Confidence 333447999999999742 2 11 233333333 33 2245788888876542 122355666899999
Q ss_pred cEEecCHHHHHHhhCC
Q 017305 296 DVLLLTSDEAESLTGL 311 (374)
Q Consensus 296 Dil~~N~~Ea~~l~g~ 311 (374)
|.+=+||+|+..+...
T Consensus 280 DSlGmNEqELa~l~~~ 295 (453)
T PRK14039 280 DSIGMNEDELAMLANL 295 (453)
T ss_pred ccccCCHHHHHHHHHH
Confidence 9999999999887643
No 82
>KOG2598 consensus Phosphomethylpyrimidine kinase [Coenzyme transport and metabolism; Transcription]
Probab=96.64 E-value=0.021 Score=54.39 Aligned_cols=125 Identities=16% Similarity=0.063 Sum_probs=76.5
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHHhcC-CeEEEcCCCCCC--CCCCCChHHHHHHHhhhccCcEEecCHHHHHHhh
Q 017305 233 HSKVLFCNGYGFDELSPALIISALEYAAQVG-TSIFFDPGPRGK--SLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLT 309 (374)
Q Consensus 233 ~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g-~~v~~D~~~~~~--~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~ 309 (374)
+++++-++ .. .+++.+.-+.+.+++.+ .++++||--... ....+.+...-..+++++.+|++.+|..|+-.|.
T Consensus 92 ~C~VvKTG-ML---~~~~I~~vi~q~l~~~~~~klVvDPVivatsG~~l~~~divsl~~e~l~P~adiltPNI~Ea~~Ll 167 (523)
T KOG2598|consen 92 KCDVVKTG-ML---PSPEIVKVIEQSLQKFNIPKLVVDPVIVATSGSSLAGKDIVSLFIEELLPFADILTPNIPEAFILL 167 (523)
T ss_pred cccEEeec-Cc---CchHHHHHHHHHHHhhcCcceeecceEEeccCCcccCCccHHHHHHHhhhhHHHhCCChHHHHHHH
Confidence 46676653 22 23343333333334444 458888842111 1112233345567889999999999999999988
Q ss_pred CCC-----------CHHHHHHHHHHcCCCccEEEEEcCCCc----------------e-EEEeCCceEEecCceeeeecc
Q 017305 310 GLR-----------NPITAGQELLRKGLRTKWVVVKMGPRG----------------S-ILVTKSSISCAPAFKVLQLQW 361 (374)
Q Consensus 310 g~~-----------~~~~~~~~l~~~g~~~~~vvvT~G~~G----------------a-~~~~~~~~~~~pa~~v~vVDt 361 (374)
+.+ +....++.+.+.|+ |.|+|+.|.-. + +++++.+++.++..-+..-.|
T Consensus 168 ~~~~~~~~~i~~v~di~~~~~~ihk~gp--k~VlvkGghiP~~~~~~~s~d~~~~~~~DvlydG~~F~~f~~~~~~t~~t 245 (523)
T KOG2598|consen 168 KKEKREISKIQSVFDIAKDAAKIHKLGP--KNVLVKGGHIPFNKNMMTSKDDSDKYTVDVLYDGKEFYIFKSPYLATKHT 245 (523)
T ss_pred hhcccCCcccccHHHHHHHHHHHHhcCc--ceEEEeCCCcCccccccccCcccCCceEEEEEecceEEEecccccccccc
Confidence 731 35667788899888 88999987521 1 233455677777766655555
Q ss_pred cc
Q 017305 362 VV 363 (374)
Q Consensus 362 tG 363 (374)
-|
T Consensus 246 HG 247 (523)
T KOG2598|consen 246 HG 247 (523)
T ss_pred cC
Confidence 55
No 83
>TIGR02045 P_fruct_ADP ADP-specific phosphofructokinase. Phosphofructokinase is a key enzyme of glycolysis. The phosphate group donor for different subtypes of phosphofructokinase can be ATP, ADP, or pyrophosphate. This family consists of ADP-dependent phosphofructokinases. Members are more similar to ADP-dependent glucokinases (excluded from this family) than to other phosphofructokinases.
Probab=96.39 E-value=0.074 Score=51.86 Aligned_cols=77 Identities=9% Similarity=0.031 Sum_probs=50.5
Q ss_pred HhhccCCcEEEEecCCCC-CC-----C----HHHHHHHHHHHHh-cCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCc
Q 017305 228 KTAIKHSKVLFCNGYGFD-EL-----S----PALIISALEYAAQ-VGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSD 296 (374)
Q Consensus 228 ~~~l~~~~~v~~~g~~~~-~~-----~----~~~~~~~~~~a~~-~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~D 296 (374)
.+..+.+|.++++|+... +. + .+...+.++..++ .++++-+...+... ..-....+..+++++|
T Consensus 204 ~~i~~~~d~~vlSG~q~m~~~y~dg~~~~~~~er~~~~i~~L~~~~~i~iH~E~As~~~-----~~l~~~i~~~ilp~vD 278 (446)
T TIGR02045 204 PEIGEPVDGAILSGYQGIKEEYSDGKTAKYYLERAKEDIELLKKNKDLKIHVEFASIQN-----REIRKKVVTNIFPHVD 278 (446)
T ss_pred hhhhhcccEEEEEchhhhhhhccCCccHhHHHHHHHHHHHHHhhCCCCeEEEEeccccc-----HHHHHHHHHhhccccc
Confidence 344466999999999742 21 1 1233344444433 67888888876542 1223445567899999
Q ss_pred EEecCHHHHHHhh
Q 017305 297 VLLLTSDEAESLT 309 (374)
Q Consensus 297 il~~N~~Ea~~l~ 309 (374)
-+=+||+|+..+.
T Consensus 279 SlGMNE~ELa~ll 291 (446)
T TIGR02045 279 SVGMDEAEIANVL 291 (446)
T ss_pred cccCCHHHHHHHH
Confidence 9999999998866
No 84
>PRK03979 ADP-specific phosphofructokinase; Provisional
Probab=95.71 E-value=0.097 Score=51.29 Aligned_cols=74 Identities=12% Similarity=0.113 Sum_probs=47.4
Q ss_pred ccCCcEEEEecCCC-CC-----CC----HHHHHHHHHHH--HhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEE
Q 017305 231 IKHSKVLFCNGYGF-DE-----LS----PALIISALEYA--AQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVL 298 (374)
Q Consensus 231 l~~~~~v~~~g~~~-~~-----~~----~~~~~~~~~~a--~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil 298 (374)
-.++|.++++|+.. .+ -. .+.+.+.++.. +..++++-|...+... ..-....+..+++++|-+
T Consensus 220 ~~~~D~avlSG~q~i~~~y~dg~~~~~~l~r~~~~i~~L~~~~~~i~iH~E~As~~~-----~~ir~~i~~~ilp~vDSl 294 (463)
T PRK03979 220 GKMVDGAILSGYQGIKEEYSDGKTAEYYLKRAKEDIKLLKKKNKDIKIHVEFASIQN-----REIRKKIITYILPHVDSV 294 (463)
T ss_pred ccCCCEEEEechhhhhccccccccHHHHHHHHHHHHHHHhhCCCCceEEEEeccccC-----HHHHHHHHHhhccccccc
Confidence 34599999999974 22 11 12223333333 2346788888876542 122344556789999999
Q ss_pred ecCHHHHHHhh
Q 017305 299 LLTSDEAESLT 309 (374)
Q Consensus 299 ~~N~~Ea~~l~ 309 (374)
=+||+|+..+.
T Consensus 295 GmNE~ELa~l~ 305 (463)
T PRK03979 295 GMDETEIANIL 305 (463)
T ss_pred cCCHHHHHHHH
Confidence 99999998654
No 85
>PRK10565 putative carbohydrate kinase; Provisional
Probab=95.57 E-value=0.19 Score=50.59 Aligned_cols=121 Identities=13% Similarity=0.140 Sum_probs=67.0
Q ss_pred HhhccCCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhh--hccCcEEecCHHHH
Q 017305 228 KTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYF--LSTSDVLLLTSDEA 305 (374)
Q Consensus 228 ~~~l~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l--l~~~Dil~~N~~Ea 305 (374)
.+.+..++.+.++. ++. ..+....+++.+++.+.++++|+..-. .+... .....|++||..|+
T Consensus 315 ~~~~~~~~a~viGp-Glg--~~~~~~~~~~~~~~~~~P~VLDAdaL~------------ll~~~~~~~~~~VLTPh~gE~ 379 (508)
T PRK10565 315 EESLEWADVVVIGP-GLG--QQEWGKKALQKVENFRKPMLWDADALN------------LLAINPDKRHNRVITPHPGEA 379 (508)
T ss_pred HHHhhcCCEEEEeC-CCC--CCHHHHHHHHHHHhcCCCEEEEchHHH------------HHhhCccccCCeEECCCHHHH
Confidence 33456778888752 211 123335555777777899999987521 11100 11246999999999
Q ss_pred HHhhCCC------CHHHHHHHHHHcCCCccEEEEEcCCCceEEEeCCceEEecCceeeeecccchhhh
Q 017305 306 ESLTGLR------NPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQWVVVLVG 367 (374)
Q Consensus 306 ~~l~g~~------~~~~~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDttGagda 367 (374)
+.|++.. +..+.++.+.++. + ..||+| |..- ++.+.++..++........-++|-||.
T Consensus 380 ~rL~~~~~~~v~~~~~~~a~~~a~~~-~-~~vvlK-G~~~-iI~~~~~~~~~~~~G~~~ma~~GsGDv 443 (508)
T PRK10565 380 ARLLGCSVAEIESDRLLSARRLVKRY-G-GVVVLK-GAGT-VIAAEPDALAIIDVGNAGMASGGMGDV 443 (508)
T ss_pred HHHhCCChhhhhhhHHHHHHHHHHHh-C-CEEEEe-CCCc-EEEcCCceEEEECCCCCCCCCCChHHH
Confidence 9999843 2345667776663 2 345554 5533 444443333333322333444664443
No 86
>PRK14038 ADP-dependent glucokinase; Provisional
Probab=95.37 E-value=0.29 Score=47.90 Aligned_cols=78 Identities=12% Similarity=0.048 Sum_probs=51.5
Q ss_pred HHHhhccCCcEEEEecCCC-CCCCH-HHH---HHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEec
Q 017305 226 EVKTAIKHSKVLFCNGYGF-DELSP-ALI---ISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLL 300 (374)
Q Consensus 226 ~~~~~l~~~~~v~~~g~~~-~~~~~-~~~---~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~ 300 (374)
.+.+...+.|.++++|+.. .+.+. +.+ .+.++..++.++++-++..... +...++.+..+++++|-+-+
T Consensus 217 ~l~ei~~~~Dl~vlSG~q~l~~~~~~~~l~~~~~~l~~l~~~~i~iH~EfAs~~------d~~~r~~i~~ilp~vDSlGm 290 (453)
T PRK14038 217 RFEEIAKKAELAIISGLQALTEENYREPFETVREHLKVLNERGIPAHLEFAFTP------DETVREEILGLLGKFYSVGL 290 (453)
T ss_pred HHHhhccCCCEEEEEchhhhccccHHHHHHHHHHHHHhcCcCCceEEEEeeccc------hHHHHHHHHhhCcccccccc
Confidence 3445567899999999974 22222 222 2233333345777888877543 23445556679999999999
Q ss_pred CHHHHHHhh
Q 017305 301 TSDEAESLT 309 (374)
Q Consensus 301 N~~Ea~~l~ 309 (374)
||+|+..+.
T Consensus 291 NE~ELa~ll 299 (453)
T PRK14038 291 NEVELASIM 299 (453)
T ss_pred CHHHHHHHH
Confidence 999998776
No 87
>cd01938 ADPGK_ADPPFK ADP-dependent glucokinase (ADPGK) and phosphofructokinase (ADPPFK). ADPGK and ADPPFK are proteins that rely on ADP rather than ATP to donate a phosphoryl group. They are found in certain hyperthermophilic archaea and in higher eukaryotes. A functional ADPGK has been characterized in mouse and is assumed to be desirable during ischemia/hypoxia. ADPGK and ADPPFK contain a large and a small domain with the binding site located in a groove between the domains. Partial domain closing is seen when ADP is bound, and further domain closing is observed when glucose is also bound. The oligomerization state apparently varies depending on the species, with some existing as monomers, some as dimers, and some as tetramers.
Probab=95.09 E-value=0.3 Score=48.03 Aligned_cols=161 Identities=14% Similarity=0.069 Sum_probs=85.7
Q ss_pred CccccCCcHHHHHHHHHHcCC-CeEEEEEecCchhHHHHHHHHHh-cCCcccceeeCCCCCcccCCCccceeEEEEECCC
Q 017305 123 KQYWEAGGNCNVAIAAARLGL-DCVTIGHVGNEIYGRFLLDVLQD-EGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPS 200 (374)
Q Consensus 123 ~~~~~GG~a~NvA~~larLG~-~~~~v~~vG~D~~G~~i~~~L~~-~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~ 200 (374)
.....||.|..+|..++++|. +|.+.+.+.... +..|-. .+|-.-.. .+.. . +.-.-+|+-.+.
T Consensus 101 ~~~~mGGnAgimAn~la~~g~~~Vil~~p~~~k~-----~~~L~~d~~i~~p~~---e~~~-----~-~d~IHlIlEy~~ 166 (445)
T cd01938 101 DELRMGGNAGLMANRLAGEGDLKVLLGVPQSSKL-----QAELFLDGPIVVPTF---ENLI-----E-EDEIHLILEYPR 166 (445)
T ss_pred ceEEeCChHHHHHHHHHhcCCceEEEecCCCcHH-----HHHhCCCCCeeeccc---ccCC-----C-CCccEEEEEcCC
Confidence 346679999999999999999 888777765442 222222 12211101 1000 0 122333333334
Q ss_pred CC-----------ccccccCCCCCCchhhhhhcccHHH-Hhhcc-CCcEEEEecCCCC-CCC--HHHHHHHHHHHHh---
Q 017305 201 QR-----------HGFCSRADFSKEPAFSWMNKLSAEV-KTAIK-HSKVLFCNGYGFD-ELS--PALIISALEYAAQ--- 261 (374)
Q Consensus 201 g~-----------r~~~~~~~~~~~~~~~~~~~l~~~~-~~~l~-~~~~v~~~g~~~~-~~~--~~~~~~~~~~a~~--- 261 (374)
|+ |-+.. .+.. .+ . . ..+++ .+..+ +.|.++++|+.+. +.+ .....+.++.+++
T Consensus 167 G~~~~~~~aPraNRfI~~-~d~~-n~-l---~-~~ee~~~~i~~~~pDl~vlSGlqmm~~~~~~~~~~~~~l~~~~~~l~ 239 (445)
T cd01938 167 GESWGDFVAPRANRFIFH-DDDN-NP-M---L-MREEFFSSILEFQPDLAVLSGLQMMEGQSFDEGTRKELLERVKSILE 239 (445)
T ss_pred CCEecceEcCCCCeEEEe-cCCc-ch-h---h-hhHHHHHHHhhcCCCEEEEechhhhcccCCChhhHHHHHHHHHHHHH
Confidence 43 22221 1111 11 1 1 11222 22333 3899999999752 221 2233333333322
Q ss_pred ---cCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhh
Q 017305 262 ---VGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLT 309 (374)
Q Consensus 262 ---~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~ 309 (374)
..+++-|...+... ..-..+.+..+++++|-+=+||.|+..+.
T Consensus 240 ~l~~~i~iH~E~As~~d-----~~l~~~i~~~ilp~VDSlGmNEqEL~~l~ 285 (445)
T cd01938 240 ILPPLIPIHLELASTVD-----EELREEILHEVVPYVDSLGLNEQELANLL 285 (445)
T ss_pred hccccCcEEEEeccccc-----HHHHHHHHHHhcccccccccCHHHHHHHH
Confidence 23778888776542 12235556678999999999999998775
No 88
>PF04587 ADP_PFK_GK: ADP-specific Phosphofructokinase/Glucokinase conserved region; InterPro: IPR007666 Although ATP is the most common phosphoryl group donor for kinases, certain hyperthermophilic archaea, such as Thermococcus litoralis and Pyrococcus furiosus, utilise unusual ADP-dependent glucokinases (ADPGKs) and phosphofructokinases (ADPPKKs) in their glycolytic pathways [, , ]. ADPGKs and ADPPFKs exhibit significant similarity, and form an ADP-dependent kinase (ADPK) family, which was tentatively named the PFKC family []. A ~460-residue ADPK domain is also found in a bifunctional ADP-dependent gluco/phosphofructo- kinase (ADP-GK/PFK) from Methanocaldococcus jannaschii (Methanococcus jannaschii) as well as in homologous hypothetical proteins present in several eukaryotes []. The whole structure of the ADPK domain can be divided into large and small alpha/beta subdomains. The larger subdomain, which carries the ADP binding site, consists of a twisted 12-stranded beta sheet flanked on both faces by 13 alpha helices and three 3(10) helices, forming an alpha/beta 3-layer sandwich. The smaller subdomain, which covers the active site, forms an alpha/beta two-layer structure containing 5 beta strands and four alpha helices. The ADP molecule is buried in a shallow pocket in the large subdomain. The binding of substrate sugar induces a structural change, the small domain closing to form a complete substrate sugar binding site [, , ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 1GC5_A 1L2L_A 3DRW_B 1U2X_A 1UA4_A.
Probab=94.37 E-value=0.062 Score=52.98 Aligned_cols=77 Identities=12% Similarity=0.131 Sum_probs=46.2
Q ss_pred HHhhccCCcEEEEecCCCCC------CCHH----HHHHHHHHHH-hcCCeEEEcCCCCCCCCCCCChH-HHHHHHhhhcc
Q 017305 227 VKTAIKHSKVLFCNGYGFDE------LSPA----LIISALEYAA-QVGTSIFFDPGPRGKSLSSGTPE-EQRALSYFLST 294 (374)
Q Consensus 227 ~~~~l~~~~~v~~~g~~~~~------~~~~----~~~~~~~~a~-~~g~~v~~D~~~~~~~~~~~~~~-~~~~~~~ll~~ 294 (374)
+.+...+.|.++++|+.+.. -..+ .+.+.++..+ ..+++|-+...... +.+ .+..+..++++
T Consensus 203 l~~~~~~~d~~vlSGlq~l~~~~~d~~~~~~~l~~~~~~i~~l~~~~~~~iH~E~As~~------d~~l~~~i~~~ilp~ 276 (444)
T PF04587_consen 203 LEEIAFKPDLAVLSGLQMLDEFYFDGETYEERLKRLKEQIKLLKSNPDIPIHLELASFA------DEELRKEILEKILPH 276 (444)
T ss_dssp HHHHHTT-SEEEEE-GGG--TB-TTSTCHHHHHHHHHHHHHHHH-HTT-EEEEE----S------SHHHHHHHHHHHGGG
T ss_pred HHhhccCCCEEEEeccccchhhccchhHHHHHHHHHHHHHHhccCCCCCceEEEecccc------CHHHHHHHHHHhhcc
Confidence 34445569999999997533 1222 2233333444 57899999988764 234 34556689999
Q ss_pred CcEEecCHHHHHHhh
Q 017305 295 SDVLLLTSDEAESLT 309 (374)
Q Consensus 295 ~Dil~~N~~Ea~~l~ 309 (374)
+|.+=+||+|+..+.
T Consensus 277 vDSlGmNEqEL~~l~ 291 (444)
T PF04587_consen 277 VDSLGMNEQELANLL 291 (444)
T ss_dssp SSEEEEEHHHHHHHH
T ss_pred ccccccCHHHHHHHH
Confidence 999999999998764
No 89
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=90.45 E-value=4.5 Score=35.76 Aligned_cols=84 Identities=12% Similarity=0.094 Sum_probs=56.9
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEec-----CHHHHHH
Q 017305 233 HSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLL-----TSDEAES 307 (374)
Q Consensus 233 ~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~-----N~~Ea~~ 307 (374)
...-|.++|-- .-+..+.+.++++.+|+.|+.+.+|.++... .+.+.++++++|.+.+ +.+..+.
T Consensus 38 sggGVt~SGGE-Pllq~~fl~~l~~~~k~~gi~~~leTnG~~~---------~~~~~~l~~~~D~~l~DiK~~d~~~~~~ 107 (213)
T PRK10076 38 SGGGVTLSGGE-VLMQAEFATRFLQRLRLWGVSCAIETAGDAP---------ASKLLPLAKLCDEVLFDLKIMDATQARD 107 (213)
T ss_pred CCCEEEEeCch-HHcCHHHHHHHHHHHHHcCCCEEEECCCCCC---------HHHHHHHHHhcCEEEEeeccCCHHHHHH
Confidence 33567676532 1244678899999999999999999998752 2455677777777655 5666678
Q ss_pred hhCCCC--HHHHHHHHHHcCC
Q 017305 308 LTGLRN--PITAGQELLRKGL 326 (374)
Q Consensus 308 l~g~~~--~~~~~~~l~~~g~ 326 (374)
++|... ..+.++.+.+.|.
T Consensus 108 ~tG~~~~~il~nl~~l~~~g~ 128 (213)
T PRK10076 108 VVKMNLPRVLENLRLLVSEGV 128 (213)
T ss_pred HHCCCHHHHHHHHHHHHhCCC
Confidence 888542 2344566666664
No 90
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=89.28 E-value=2.8 Score=37.78 Aligned_cols=115 Identities=16% Similarity=0.115 Sum_probs=68.3
Q ss_pred HhhccCCcEEEEecC-CCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhc-c-CcEEecCHHH
Q 017305 228 KTAIKHSKVLFCNGY-GFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLS-T-SDVLLLTSDE 304 (374)
Q Consensus 228 ~~~l~~~~~v~~~g~-~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~-~-~Dil~~N~~E 304 (374)
++.+.+-.+++++.- +.++.....+..+++++++.++++++|..+- |--. +..+.++. + .-|+.||.-|
T Consensus 96 ~k~L~RlhavVIGPGLGRdp~~~k~i~~iley~~~~dvP~VIDaDGL----~Lv~----q~~e~l~~~~~~viLTPNvvE 167 (306)
T KOG3974|consen 96 EKLLQRLHAVVIGPGLGRDPAILKEIAKILEYLRGKDVPLVIDADGL----WLVE----QLPERLIGGYPKVILTPNVVE 167 (306)
T ss_pred HHHHhheeEEEECCCCCCCHHHHHHHHHHHHHHhcCCCcEEEcCCce----Eehh----hchhhhhccCceeeeCCcHHH
Confidence 345666777777432 1223334567889999999999999998763 2111 11121222 1 3588999999
Q ss_pred HHHhhCCC----CHHHHHHHHHHcCCCccEEEEEcCCCceEEEeCCceEEec
Q 017305 305 AESLTGLR----NPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAP 352 (374)
Q Consensus 305 a~~l~g~~----~~~~~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~p 352 (374)
++.|++.. +....+..|.+.-. ...|+--|+.-.++..+++....+
T Consensus 168 FkRLcd~~l~~~d~~~~~~~L~~~l~--nv~vvqKG~~D~ils~~~ev~~~s 217 (306)
T KOG3974|consen 168 FKRLCDAELDKVDSHSQMQHLAAELM--NVTVVQKGESDKILSPDSEVRVCS 217 (306)
T ss_pred HHHHHHHhhccccchHHHHHHHHHhc--CeEEEEecCCceeeCCCCeeEEcc
Confidence 99998752 22333444443322 347777788777555555544443
No 91
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=89.26 E-value=4.2 Score=34.15 Aligned_cols=112 Identities=14% Similarity=0.166 Sum_probs=67.6
Q ss_pred hhHHHHHHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCc------hhhhhhc-ccHHH
Q 017305 155 IYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEP------AFSWMNK-LSAEV 227 (374)
Q Consensus 155 ~~G~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~------~~~~~~~-l~~~~ 227 (374)
..-..+.+.|++.|..+-++...+-+ .....+|+.++-++ +|++.+.++.+..... ..+.++. ..+.+
T Consensus 20 Tl~~ki~e~L~~~g~kvgGf~t~EVR----~gGkR~GF~Ivdl~-tg~~~~la~~~~~~~rvGkY~V~v~~le~i~~~al 94 (179)
T COG1618 20 TLVLKIAEKLREKGYKVGGFITPEVR----EGGKRIGFKIVDLA-TGEEGILARVGFSRPRVGKYGVNVEGLEEIAIPAL 94 (179)
T ss_pred HHHHHHHHHHHhcCceeeeEEeeeee----cCCeEeeeEEEEcc-CCceEEEEEcCCCCcccceEEeeHHHHHHHhHHHH
Confidence 34466778888887777666432211 01113777776665 5777766554442111 1122332 22445
Q ss_pred HhhccCCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCC
Q 017305 228 KTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPG 271 (374)
Q Consensus 228 ~~~l~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~ 271 (374)
..+++.+|+++++-.+..++......+.++..-+.+.++++-.-
T Consensus 95 ~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpliatlH 138 (179)
T COG1618 95 RRALEEADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLH 138 (179)
T ss_pred HHHhhcCCEEEEecccchhhccHHHHHHHHHHhcCCCcEEEEEe
Confidence 66778899999998887776666677777777777777766554
No 92
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase. Several uncharacterised proteins have been shown to share regions of similarities, including yeast chromosome XI hypothetical protein YKL151c; Caenorhabditis elegans hypothetical protein R107.2; Escherichia coli hypothetical protein yjeF; Bacillus subtilis hypothetical protein yxkO; Helicobacter pylori hypothetical protein HP1363; Mycobacterium tuberculosis hypothetical protein MtCY77.05c; Mycobacterium leprae hypothetical protein B229_C2_201; Synechocystis sp. (strain PCC 6803) hypothetical protein sll1433; and Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1586. These are proteins of about 30 to 40 kDa whose central region is well conserved.; PDB: 3RSG_A 3RT9_A 3RRF_A 3RTB_A 3RRE_A 3RS9_A 3RSS_A 3RRB_A 3RTA_A 3RTD_A ....
Probab=86.01 E-value=7.9 Score=34.92 Aligned_cols=107 Identities=17% Similarity=0.153 Sum_probs=63.9
Q ss_pred HhhccCCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHh---hhccCcEEecCHHH
Q 017305 228 KTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSY---FLSTSDVLLLTSDE 304 (374)
Q Consensus 228 ~~~l~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~---ll~~~Dil~~N~~E 304 (374)
.+.++++|.+.+.. +++ .. +...++++...+...++++|...-. .+.. ....--|++|+..|
T Consensus 62 ~~~~~~~~av~iGP-Glg-~~-~~~~~~~~~~~~~~~p~VlDADaL~------------~l~~~~~~~~~~~IlTPH~gE 126 (242)
T PF01256_consen 62 LELLEKADAVVIGP-GLG-RD-EETEELLEELLESDKPLVLDADALN------------LLAENPKKRNAPVILTPHPGE 126 (242)
T ss_dssp HHHHCH-SEEEE-T-T-S-SS-HHHHHHHHHHHHHCSTEEEECHHHH------------CHHHCCCCSSSCEEEE-BHHH
T ss_pred HhhhccCCEEEeec-CCC-Cc-hhhHHHHHHHHhhcceEEEehHHHH------------HHHhccccCCCCEEECCCHHH
Confidence 34567789998852 222 22 3334466665666778999976321 1112 34456799999999
Q ss_pred HHHhhCCC-----CHHHHHHHHHHcCCCccEEEEEcCCCceEEEeCCceEEec
Q 017305 305 AESLTGLR-----NPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAP 352 (374)
Q Consensus 305 a~~l~g~~-----~~~~~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~p 352 (374)
+..|++.. +..+.++++.++. +.+||=.|..-.++..+++.+..+
T Consensus 127 ~~rL~~~~~~~~~~~~~~a~~~a~~~---~~~vvLKG~~t~I~~p~~~~~~n~ 176 (242)
T PF01256_consen 127 FARLLGKSVEIQEDRIEAAREFAKEY---GAVVVLKGAVTIIASPGGRVYVNP 176 (242)
T ss_dssp HHHHHTTTCHHCCSHHHHHHHHHHHH---TSEEEEESTSSEEEEETSEEEEE-
T ss_pred HHHHhCCcccchhhHHHHHHHHHhhc---CcEEEEeCCCcEEEecCcceeEeC
Confidence 99999864 4677888887763 224444477666555566655544
No 93
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=84.18 E-value=7.4 Score=32.19 Aligned_cols=58 Identities=14% Similarity=0.074 Sum_probs=43.8
Q ss_pred cEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHH
Q 017305 235 KVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEA 305 (374)
Q Consensus 235 ~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea 305 (374)
+.|.++| ++...+.+.++++.+++.|..+.++.++.. .+...++++++|+++...-+.
T Consensus 63 ~gVt~SG---GEl~~~~l~~ll~~lk~~Gl~i~l~Tg~~~----------~~~~~~il~~iD~l~~g~y~~ 120 (147)
T TIGR02826 63 SCVLFLG---GEWNREALLSLLKIFKEKGLKTCLYTGLEP----------KDIPLELVQHLDYLKTGRWIH 120 (147)
T ss_pred CEEEEec---hhcCHHHHHHHHHHHHHCCCCEEEECCCCC----------HHHHHHHHHhCCEEEEChHHH
Confidence 4676766 456677889999999999999999987542 134467889999999887543
No 94
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=82.50 E-value=18 Score=33.02 Aligned_cols=84 Identities=21% Similarity=0.205 Sum_probs=57.3
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEec-----CHHHHHH
Q 017305 233 HSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLL-----TSDEAES 307 (374)
Q Consensus 233 ~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~-----N~~Ea~~ 307 (374)
..+.|.++|-- .-+..+.+.++++.+|+.|..+.+|.++... ++...++++.+|.+.+ +++..+.
T Consensus 83 ~~~gvt~SGGE-P~~q~e~~~~~~~~ake~Gl~~~l~TnG~~~---------~~~~~~l~~~~D~v~~DlK~~~~~~y~~ 152 (260)
T COG1180 83 SGGGVTFSGGE-PTLQAEFALDLLRAAKERGLHVALDTNGFLP---------PEALEELLPLLDAVLLDLKAFDDELYRK 152 (260)
T ss_pred CCCEEEEECCc-chhhHHHHHHHHHHHHHCCCcEEEEcCCCCC---------HHHHHHHHhhcCeEEEeeccCChHHHHH
Confidence 56778777631 1244688999999999999999999998752 2333566666776654 4444777
Q ss_pred hhCCCC--HHHHHHHHHHcCC
Q 017305 308 LTGLRN--PITAGQELLRKGL 326 (374)
Q Consensus 308 l~g~~~--~~~~~~~l~~~g~ 326 (374)
++|... ..+.++.+.+.|.
T Consensus 153 ~tg~~~~~vl~~~~~l~~~g~ 173 (260)
T COG1180 153 LTGADNEPVLENLELLADLGV 173 (260)
T ss_pred HhCCCcHHHHHHHHHHHcCCC
Confidence 877653 3456666777663
No 95
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=82.09 E-value=20 Score=27.14 Aligned_cols=42 Identities=17% Similarity=0.257 Sum_probs=32.9
Q ss_pred HHhhccCCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCC
Q 017305 227 VKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPG 271 (374)
Q Consensus 227 ~~~~l~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~ 271 (374)
+...+.++|+|++-- +-++.+.+..+-+.|++.++++++--+
T Consensus 42 l~~~i~~aD~VIv~t---~~vsH~~~~~vk~~akk~~ip~~~~~~ 83 (97)
T PF10087_consen 42 LPSKIKKADLVIVFT---DYVSHNAMWKVKKAAKKYGIPIIYSRS 83 (97)
T ss_pred HHHhcCCCCEEEEEe---CCcChHHHHHHHHHHHHcCCcEEEECC
Confidence 455688899886542 567789999999999999999887653
No 96
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=79.27 E-value=80 Score=32.39 Aligned_cols=23 Identities=9% Similarity=-0.018 Sum_probs=18.2
Q ss_pred CCcHHHHHHHHHHcCCCeEEEEE
Q 017305 128 AGGNCNVAIAAARLGLDCVTIGH 150 (374)
Q Consensus 128 GG~a~NvA~~larLG~~~~~v~~ 150 (374)
||-|..++..|.+.|.++..+.+
T Consensus 90 GgIG~aLAr~LLk~G~~Vval~R 112 (576)
T PLN03209 90 GKVGSRTVRELLKLGFRVRAGVR 112 (576)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeC
Confidence 56688899999999998876644
No 97
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=72.47 E-value=8.8 Score=27.69 Aligned_cols=45 Identities=24% Similarity=0.356 Sum_probs=35.3
Q ss_pred CCc--HHHHHHHHHHcCCCeEEEEEecC------chhHHHHHHHHHhcCCccc
Q 017305 128 AGG--NCNVAIAAARLGLDCVTIGHVGN------EIYGRFLLDVLQDEGIGMV 172 (374)
Q Consensus 128 GG~--a~NvA~~larLG~~~~~v~~vG~------D~~G~~i~~~L~~~GVd~~ 172 (374)
||+ +.=.|..++++|.+++++..-.. ....+.+.+.|++.||+..
T Consensus 6 GgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~ 58 (80)
T PF00070_consen 6 GGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVH 58 (80)
T ss_dssp SSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEE
T ss_pred CcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEE
Confidence 555 66789999999999999886432 2357888899999999875
No 98
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=72.30 E-value=51 Score=30.44 Aligned_cols=82 Identities=17% Similarity=0.219 Sum_probs=51.8
Q ss_pred cEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEe-----cCHHHHHHhh
Q 017305 235 KVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLL-----LTSDEAESLT 309 (374)
Q Consensus 235 ~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~-----~N~~Ea~~l~ 309 (374)
..|.++| +-.-+.++.+.++++++++.|..+.++.++.. . .+.+.++++..|++. .+++....+.
T Consensus 127 ~~V~~sG-GEPll~~~~l~~l~~~~k~~g~~~~i~TnG~~--~-------~~~~~~ll~~~d~~~isl~~~~~~~~~~~~ 196 (295)
T TIGR02494 127 GGVTLSG-GEPLLQPEFALALLQACHERGIHTAVETSGFT--P-------WETIEKVLPYVDLFLFDIKHLDDERHKEVT 196 (295)
T ss_pred CcEEeeC-cchhchHHHHHHHHHHHHHcCCcEeeeCCCCC--C-------HHHHHHHHhhCCEEEEeeccCChHHHHHHh
Confidence 4566666 22224466677999999999999999998753 1 134456666777764 3455556666
Q ss_pred CCC--CHHHHHHHHHHcCC
Q 017305 310 GLR--NPITAGQELLRKGL 326 (374)
Q Consensus 310 g~~--~~~~~~~~l~~~g~ 326 (374)
|.. ...+.++.+.+.+.
T Consensus 197 g~~~~~vl~~i~~l~~~~~ 215 (295)
T TIGR02494 197 GVDNEPILENLEALAAAGK 215 (295)
T ss_pred CCChHHHHHHHHHHHhCCC
Confidence 643 23355566777664
No 99
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=72.22 E-value=23 Score=32.73 Aligned_cols=105 Identities=20% Similarity=0.184 Sum_probs=56.2
Q ss_pred ccCCcEEEEecCCCCCCCHHHHHHHHHHHHhcC-CeEEEcCCCCCCCCCCCChHHHHHHHhhhc-cCcEEecCHHHHHHh
Q 017305 231 IKHSKVLFCNGYGFDELSPALIISALEYAAQVG-TSIFFDPGPRGKSLSSGTPEEQRALSYFLS-TSDVLLLTSDEAESL 308 (374)
Q Consensus 231 l~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g-~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~-~~Dil~~N~~Ea~~l 308 (374)
.+.+|.+.++. ++ .... ...++++..-+.. .++++|...-.. + .....+.. .--|+.|+.-|++.|
T Consensus 99 ~~~~~avviGp-Gl-G~~~-~~~~~~~~~l~~~~~p~ViDADaL~~-l--------a~~~~~~~~~~~VlTPH~gEf~rL 166 (284)
T COG0063 99 VERADAVVIGP-GL-GRDA-EGQEALKELLSSDLKPLVLDADALNL-L--------AELPDLLDERKVVLTPHPGEFARL 166 (284)
T ss_pred hccCCEEEECC-CC-CCCH-HHHHHHHHHHhccCCCEEEeCcHHHH-H--------HhCcccccCCcEEECCCHHHHHHh
Confidence 46788888862 21 1222 2223333333333 789999874210 0 00011221 127899999999999
Q ss_pred hCCC------CHHHHHHHHHHcCCCccEEEEEcCCCceEEEeCCceEE
Q 017305 309 TGLR------NPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISC 350 (374)
Q Consensus 309 ~g~~------~~~~~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~ 350 (374)
+|.+ +..++++++.++. + . +||=.|..-.+...+++.+.
T Consensus 167 ~g~~~~~~~~~r~~~a~~~a~~~-~-~-vvVLKG~~tvI~~~~g~~~~ 211 (284)
T COG0063 167 LGTEVDEIEVDRLEAARELAAKY-G-A-VVVLKGAVTVIADPDGEVFV 211 (284)
T ss_pred cCCcccccccchHHHHHHHHHHc-C-C-EEEEeCCCCEEEcCCCcEEE
Confidence 9832 3467778887763 2 2 44444665555442334433
No 100
>PRK08114 cystathionine beta-lyase; Provisional
Probab=71.17 E-value=39 Score=32.88 Aligned_cols=41 Identities=17% Similarity=0.148 Sum_probs=23.2
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHHhc--CCeEEEcCCCC
Q 017305 233 HSKVLFCNGYGFDELSPALIISALEYAAQV--GTSIFFDPGPR 273 (374)
Q Consensus 233 ~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~--g~~v~~D~~~~ 273 (374)
+.++|++...........-+.++.+.|+++ |+.+++|....
T Consensus 147 ~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a 189 (395)
T PRK08114 147 NTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWA 189 (395)
T ss_pred CceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCc
Confidence 356777765432211122356666777776 47888887643
No 101
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=70.61 E-value=13 Score=33.67 Aligned_cols=35 Identities=23% Similarity=0.367 Sum_probs=23.4
Q ss_pred cHHHHHHHHHHcCCCeEEEEEecCchhHHHHHHHHHh
Q 017305 130 GNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQD 166 (374)
Q Consensus 130 ~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~~~L~~ 166 (374)
.+...|--|..+|.++..+..||||. +.|.+.++.
T Consensus 22 Na~~la~~L~~~G~~v~~~~~VgD~~--~~I~~~l~~ 56 (255)
T COG1058 22 NAAFLADELTELGVDLARITTVGDNP--DRIVEALRE 56 (255)
T ss_pred hHHHHHHHHHhcCceEEEEEecCCCH--HHHHHHHHH
Confidence 45666677777788888888888873 445555554
No 102
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=70.33 E-value=54 Score=31.90 Aligned_cols=41 Identities=17% Similarity=0.104 Sum_probs=28.9
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCC
Q 017305 233 HSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPR 273 (374)
Q Consensus 233 ~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~ 273 (374)
+.++|++..-....+...-+..+.+.|++.|..+++|-...
T Consensus 149 ~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfa 189 (396)
T COG0626 149 NTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFA 189 (396)
T ss_pred CceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCcc
Confidence 68888887544322223357788888999999999997654
No 103
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=68.19 E-value=11 Score=24.56 Aligned_cols=28 Identities=36% Similarity=0.563 Sum_probs=25.1
Q ss_pred ecCHHHHHHhhCCCCHHHHHHHHHHcCC
Q 017305 299 LLTSDEAESLTGLRNPITAGQELLRKGL 326 (374)
Q Consensus 299 ~~N~~Ea~~l~g~~~~~~~~~~l~~~g~ 326 (374)
+++.+|+..|+|...+...++.|.+.|+
T Consensus 2 fLT~~El~elTG~k~~~~Q~~~L~~~Gi 29 (47)
T PF13986_consen 2 FLTDEELQELTGYKRPSKQIRWLRRNGI 29 (47)
T ss_pred CCCHHHHHHHHCCCCHHHHHHHHHHCCC
Confidence 5789999999999988888999999886
No 104
>PRK09330 cell division protein FtsZ; Validated
Probab=67.19 E-value=1.3e+02 Score=29.28 Aligned_cols=140 Identities=12% Similarity=0.118 Sum_probs=67.7
Q ss_pred cCCcHHHHHHHHHHcCCC-eEEEEEecCchhHHHHHHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccc
Q 017305 127 EAGGNCNVAIAAARLGLD-CVTIGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGF 205 (374)
Q Consensus 127 ~GG~a~NvA~~larLG~~-~~~v~~vG~D~~G~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~ 205 (374)
.||++.|+.-.+.+.|.+ +.|+ .+-.|. +.|.....+.... ..+. -.+++
T Consensus 21 vGG~G~Nav~~m~~~~~~~v~fi-a~NTD~------q~L~~~~a~~ki~-lG~~---------------------~t~Gl 71 (384)
T PRK09330 21 VGGGGGNAVNRMIEEGIQGVEFI-AANTDA------QALLKSKAPVKIQ-LGEK---------------------LTRGL 71 (384)
T ss_pred ECCcHHHHHHHHHHcCCCCceEE-EEeCcH------HHHhcCCCCeEEE-cCCc---------------------ccccC
Confidence 489999999999998864 4444 445662 3455544443211 1111 00111
Q ss_pred cccCCCCCCchhhhhhcccHHHHhhccCCcEEEEecCCCCCCC-HHHHHHHHHHHHhcCCeEE-EcCCCCCCCCCCC-C-
Q 017305 206 CSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGYGFDELS-PALIISALEYAAQVGTSIF-FDPGPRGKSLSSG-T- 281 (374)
Q Consensus 206 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~~~g~~~~~~~-~~~~~~~~~~a~~~g~~v~-~D~~~~~~~~~~~-~- 281 (374)
-...+.. ......+...+.+.+.++++|.|++..-. +.-+ .....-+.+.+|+.|..++ +=+.+.. +... +
T Consensus 72 GaG~~pe--~G~~aaee~~e~I~~~l~~~D~vfI~AGm-GGGTGTGaapvIA~iake~g~ltvaVvt~PF~--fEG~~r~ 146 (384)
T PRK09330 72 GAGANPE--VGRKAAEESREEIREALEGADMVFITAGM-GGGTGTGAAPVVAEIAKELGILTVAVVTKPFS--FEGKKRM 146 (384)
T ss_pred CCCCCHH--HHHHHHHHHHHHHHHHHcCCCEEEEEecC-CCcccHHHHHHHHHHHHHcCCcEEEEEecCcc--ccchhHH
Confidence 1111110 00011112224566778999988654321 2222 1223345577888886532 2222221 1110 0
Q ss_pred hHHHHHHHhhhccCcEEec
Q 017305 282 PEEQRALSYFLSTSDVLLL 300 (374)
Q Consensus 282 ~~~~~~~~~ll~~~Dil~~ 300 (374)
....+.+.++.+++|.+++
T Consensus 147 ~nA~~gL~~L~~~~D~vIv 165 (384)
T PRK09330 147 KQAEEGIEELRKHVDTLIV 165 (384)
T ss_pred HHHHHHHHHHHHHCCEEEE
Confidence 1235567778888887653
No 105
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=66.39 E-value=55 Score=27.85 Aligned_cols=81 Identities=17% Similarity=0.164 Sum_probs=56.8
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHH---hh
Q 017305 233 HSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAES---LT 309 (374)
Q Consensus 233 ~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~---l~ 309 (374)
+++.+-+.|+. ++.+.+..+-+.++++|+.|+.||.... ..-+..+.+.++.+--.++...++.. -.
T Consensus 22 d~~~I~T~Gs~---i~~~~i~~i~~~~~~rgVIIfTDpD~~G-------ekIRk~i~~~vp~~khafi~~~~a~~~~~~i 91 (174)
T TIGR00334 22 DVDVIETNGSA---LKDETINLIKKAQKKQGVIILTDPDFPG-------EKIRKKIEQHLPGYENCFIPKHLAKPNKKKI 91 (174)
T ss_pred CceEEEECCCc---cCHHHHHHHHHHhhcCCEEEEeCCCCch-------HHHHHHHHHHCCCCeEEeeeHHhcCcCCCCc
Confidence 58899898864 4667777777777889999999998654 33466777778888888999888752 13
Q ss_pred CCC--CHHHHHHHHHH
Q 017305 310 GLR--NPITAGQELLR 323 (374)
Q Consensus 310 g~~--~~~~~~~~l~~ 323 (374)
|.+ +++...+.|..
T Consensus 92 GVE~As~e~I~~AL~~ 107 (174)
T TIGR00334 92 GVEEASVEAIIAALEN 107 (174)
T ss_pred ccCCCCHHHHHHHHHH
Confidence 433 35555555543
No 106
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=66.35 E-value=85 Score=29.86 Aligned_cols=151 Identities=13% Similarity=0.093 Sum_probs=74.1
Q ss_pred cCCcHHHHHHHHHHcCCCeEEEEEecCchhHHHHHHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCcccc
Q 017305 127 EAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFC 206 (374)
Q Consensus 127 ~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~ 206 (374)
.||++.|+.-.+.+-|.+-.=+-.+..| .+.|+...++.... .... -.+..-
T Consensus 19 vGg~G~n~v~~m~~~~~~gve~ia~nTD------~q~L~~~~a~~ki~-iG~~---------------------~t~GlG 70 (338)
T COG0206 19 VGGAGGNAVNRMIEEGVEGVEFIAINTD------AQALKSSKADRKIL-IGES---------------------ITRGLG 70 (338)
T ss_pred eCCcchHHHHHHHHhhhCceEEEEeccC------HHHHhccccCeEEE-eccc---------------------eeeccC
Confidence 4899999999999999884444455777 34455544433211 1110 001111
Q ss_pred ccCCCCCCchhhhhhcccHHHHhhccCCc-EEEEecCCCCCCCHHHHHHHHHHHHhcCCeEE-EcCCCCCCCCCCCChHH
Q 017305 207 SRADFSKEPAFSWMNKLSAEVKTAIKHSK-VLFCNGYGFDELSPALIISALEYAAQVGTSIF-FDPGPRGKSLSSGTPEE 284 (374)
Q Consensus 207 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~-~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~-~D~~~~~~~~~~~~~~~ 284 (374)
...+.+ .-....+...+++.+.++++| ++++.|++-..- .-...-+.+.+|+.|.+++ +..-+....-.......
T Consensus 71 aGa~P~--vG~~aAee~~~~I~~~l~g~dmvfitaG~GGGTG-tGaaPVvakiake~g~ltvavvt~Pf~~EG~~r~~~A 147 (338)
T COG0206 71 AGANPE--VGRAAAEESIEEIEEALKGADMVFVTAGMGGGTG-TGAAPVVAEIAKELGALTVAVVTLPFSFEGSPRMENA 147 (338)
T ss_pred CCCCcH--HHHHHHHHHHHHHHHHhccCCeEEEEeeecCCcc-ccccHHHHHHHHhcCCcEEEEEEecchhcCchHHHHH
Confidence 111110 000111122255677899999 445566543211 1223345566777886643 33333221000001223
Q ss_pred HHHHHhhhccCc--EEecCHHHHHHh
Q 017305 285 QRALSYFLSTSD--VLLLTSDEAESL 308 (374)
Q Consensus 285 ~~~~~~ll~~~D--il~~N~~Ea~~l 308 (374)
.+-++.+-+++| ++++|+.-++..
T Consensus 148 ~~gi~~L~~~~DtlIvi~Ndkll~~~ 173 (338)
T COG0206 148 EEGIEELREVVDTLIVIPNDKLLKGK 173 (338)
T ss_pred HHHHHHHHHhCCcEEEEecHHHHhcc
Confidence 455667777655 567777655543
No 107
>KOG4184 consensus Predicted sugar kinase [Carbohydrate transport and metabolism; General function prediction only]
Probab=62.68 E-value=61 Score=30.78 Aligned_cols=160 Identities=14% Similarity=0.139 Sum_probs=80.2
Q ss_pred ccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHHHHHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCC-
Q 017305 124 QYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQR- 202 (374)
Q Consensus 124 ~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~- 202 (374)
..+.||.+.-.|.-...-| .+.++|..|.-...-.+-++.+-.|-. +.. + -.-+|+-...|+
T Consensus 139 ~~~mGGNA~LMA~R~~~~~-~~~LlG~~~~R~~~~L~P~~~R~~~~~---I~~--D-----------diHlILEYK~Gd~ 201 (478)
T KOG4184|consen 139 NWYMGGNAPLMAVRFFMEG-AQVLLGAHMSRKLRPLLPKEIRLAGDE---IPN--D-----------DIHLILEYKAGDK 201 (478)
T ss_pred hhhccCCchHHHHHHHhcc-ceeeecccccchhccccchhhhcccCc---CcC--C-----------ceEEEEEeccCCc
Confidence 4456888888887777666 788999988764322222222221111 110 0 011222222232
Q ss_pred ----------ccccccCCCCCCchhhhhhcccHHHHhhccCCcEEEEecCCCCCCC-HHHHHHHHHHHHh------cCCe
Q 017305 203 ----------HGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGYGFDELS-PALIISALEYAAQ------VGTS 265 (374)
Q Consensus 203 ----------r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~~~g~~~~~~~-~~~~~~~~~~a~~------~g~~ 265 (374)
|.+....-+ .+....++.+.+.+. .-+.|+|+++|..+.+.. .+.-.+-++..++ .|++
T Consensus 202 ~G~~VAP~anR~I~~~D~~--n~~m~~~E~f~~Al~--~fqPdLvVvsGlhmme~qske~r~~rl~~V~r~L~~iP~gip 277 (478)
T KOG4184|consen 202 WGPYVAPRANRYILHNDRN--NPHMRAVEQFTDALK--MFQPDLVVVSGLHMMEMQSKEEREARLQQVVRSLSDIPTGIP 277 (478)
T ss_pred ccccccccccceeeecCCC--ChHHHHHHHHHHHHH--HhCCCEEEEechhHHhhhhHHHHHHHHHHHHHHHhcCCCCCc
Confidence 222221111 222222333333222 125789999998764432 2222222222221 3566
Q ss_pred EEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhh
Q 017305 266 IFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLT 309 (374)
Q Consensus 266 v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~ 309 (374)
+=++..+... ..-..+.+..+++++|=+=+||.|+.-|.
T Consensus 278 ~HlElaS~~~-----~~l~~~i~h~VlPyVdSLGlNEQEL~fL~ 316 (478)
T KOG4184|consen 278 VHLELASMTN-----RELMSSIVHQVLPYVDSLGLNEQELLFLT 316 (478)
T ss_pred hhhhHhHHHH-----HHHHHHHHHHhhhhccccCCCHHHHHHHH
Confidence 6666655431 11224455678999999999999998765
No 108
>PRK05967 cystathionine beta-lyase; Provisional
Probab=62.56 E-value=1.3e+02 Score=29.28 Aligned_cols=40 Identities=20% Similarity=0.191 Sum_probs=29.4
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCC
Q 017305 233 HSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGP 272 (374)
Q Consensus 233 ~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~ 272 (374)
+.++|++............+.++.+.|+++|+.+++|-..
T Consensus 149 ~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t~ 188 (395)
T PRK05967 149 NTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTW 188 (395)
T ss_pred CceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECCc
Confidence 4677888754333345567888899999999999999764
No 109
>PRK09028 cystathionine beta-lyase; Provisional
Probab=61.35 E-value=1.2e+02 Score=29.59 Aligned_cols=41 Identities=17% Similarity=0.131 Sum_probs=30.0
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCC
Q 017305 233 HSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPR 273 (374)
Q Consensus 233 ~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~ 273 (374)
+.++|+++...........+.++.+.|+++|+.+++|-...
T Consensus 146 ~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~a 186 (394)
T PRK09028 146 NTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWA 186 (394)
T ss_pred CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCcc
Confidence 46788887544333445667888999999999999997643
No 110
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=60.97 E-value=36 Score=30.83 Aligned_cols=79 Identities=19% Similarity=0.143 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHH------hhCC---------
Q 017305 247 LSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAES------LTGL--------- 311 (374)
Q Consensus 247 ~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~------l~g~--------- 311 (374)
.-.+.+..+.+.+++.|.+++-++-.. +.++.+.+++|++++-..++.. +.+.
T Consensus 63 ~G~~gl~~L~~~~~~~Gl~~~Tev~d~------------~~v~~~~e~vdilqIgs~~~~n~~LL~~va~tgkPVilk~G 130 (250)
T PRK13397 63 LGLQGIRYLHEVCQEFGLLSVSEIMSE------------RQLEEAYDYLDVIQVGARNMQNFEFLKTLSHIDKPILFKRG 130 (250)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeeCCH------------HHHHHHHhcCCEEEECcccccCHHHHHHHHccCCeEEEeCC
Confidence 334678888888899999998886532 2234455679999876555432 2211
Q ss_pred -----CCHHHHHHHHHHcCCCccEEEEEc-CCCc
Q 017305 312 -----RNPITAGQELLRKGLRTKWVVVKM-GPRG 339 (374)
Q Consensus 312 -----~~~~~~~~~l~~~g~~~~~vvvT~-G~~G 339 (374)
++...+++.+.+.|. +.+++.. |-.+
T Consensus 131 ~~~t~~e~~~A~e~i~~~Gn--~~i~L~eRg~~~ 162 (250)
T PRK13397 131 LMATIEEYLGALSYLQDTGK--SNIILCERGVRG 162 (250)
T ss_pred CCCCHHHHHHHHHHHHHcCC--CeEEEEccccCC
Confidence 134566777777764 3455443 5433
No 111
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=60.86 E-value=1e+02 Score=30.07 Aligned_cols=48 Identities=21% Similarity=0.140 Sum_probs=33.0
Q ss_pred HHHhhccC-CcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCC
Q 017305 226 EVKTAIKH-SKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPR 273 (374)
Q Consensus 226 ~~~~~l~~-~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~ 273 (374)
.++..+++ .++|++......-.....+.++.+.|++.|+.|++|-...
T Consensus 154 ~~~~~i~~~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~ 202 (409)
T KOG0053|consen 154 KILKAIKENTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFG 202 (409)
T ss_pred HHHHhhccCceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcC
Confidence 34445555 8889988654322333457788888999999999997644
No 112
>PRK13018 cell division protein FtsZ; Provisional
Probab=60.00 E-value=1.7e+02 Score=28.33 Aligned_cols=141 Identities=11% Similarity=0.103 Sum_probs=67.7
Q ss_pred cCCcHHHHHHHHHHcCCC-eEEEEEecCchhHHHHHHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccc
Q 017305 127 EAGGNCNVAIAAARLGLD-CVTIGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGF 205 (374)
Q Consensus 127 ~GG~a~NvA~~larLG~~-~~~v~~vG~D~~G~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~ 205 (374)
.||++.|+.-.+.+.|.+ +.|+ .+-.|. +.|.....+.. +...+... -| ....++...
T Consensus 36 vGGaG~N~v~~m~~~~~~~v~~i-aiNTD~------q~L~~~~a~~k-i~iG~~~t--------~G-----~GaG~dp~~ 94 (378)
T PRK13018 36 CGGAGNNTINRLYEIGIEGAETI-AINTDA------QHLAMIKADKK-ILIGKSLT--------RG-----LGAGGDPEV 94 (378)
T ss_pred eCCcHHHHHHHHHHcCCCCceEE-EEECCH------HHHhcCCCCcE-EecCCccC--------CC-----CCCCCChHH
Confidence 489999999999999866 4444 456673 45555444322 11111100 00 001111111
Q ss_pred cccCCCCCCchhhhhhcccHHHHhhccCCcEEEEecCCCCCCC-HHHHHHHHHHHHhcCCeEEE-cCCCCCCCCCCCC--
Q 017305 206 CSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGYGFDELS-PALIISALEYAAQVGTSIFF-DPGPRGKSLSSGT-- 281 (374)
Q Consensus 206 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~~~g~~~~~~~-~~~~~~~~~~a~~~g~~v~~-D~~~~~~~~~~~~-- 281 (374)
.....+...+.+.+.++++|.|++.... +.-+ --....+++.+++.+..++- =..|+. .. +.
T Consensus 95 ----------G~~aaee~~d~I~~~le~~D~vfI~aGL-GGGTGSGaapvIa~iake~g~ltv~vVt~Pf~--~E-G~~r 160 (378)
T PRK13018 95 ----------GRKAAEESRDEIKEVLKGADLVFVTAGM-GGGTGTGAAPVVAEIAKEQGALVVGVVTKPFK--FE-GRAR 160 (378)
T ss_pred ----------HHHHHHHHHHHHHHHhcCCCEEEEEeec-cCcchhhHHHHHHHHHHHcCCCeEEEEEcCcc--cc-cHhH
Confidence 0011112224566778899987654322 2222 22344566777777754321 112221 10 01
Q ss_pred -hHHHHHHHhhhccCcEEecCH
Q 017305 282 -PEEQRALSYFLSTSDVLLLTS 302 (374)
Q Consensus 282 -~~~~~~~~~ll~~~Dil~~N~ 302 (374)
......+.++.+++|.+++-.
T Consensus 161 ~~nA~~gL~~L~e~~D~vivid 182 (378)
T PRK13018 161 MQKAEEGIERLREAADTVIVID 182 (378)
T ss_pred HHHHHHHHHHHHHhCCEEEEEe
Confidence 113456777888888765433
No 113
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=59.45 E-value=1.4e+02 Score=28.69 Aligned_cols=41 Identities=22% Similarity=0.125 Sum_probs=29.7
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCC
Q 017305 233 HSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPR 273 (374)
Q Consensus 233 ~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~ 273 (374)
+.++|+++...........+.++.+.|+++|+.+++|-...
T Consensus 135 ~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~a 175 (377)
T TIGR01324 135 NTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWA 175 (377)
T ss_pred CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCc
Confidence 46778876544333445667888899999999999997643
No 114
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=58.65 E-value=1.1e+02 Score=25.87 Aligned_cols=81 Identities=23% Similarity=0.355 Sum_probs=48.0
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhc--cCcEEec----CHHHHHH
Q 017305 234 SKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLS--TSDVLLL----TSDEAES 307 (374)
Q Consensus 234 ~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~--~~Dil~~----N~~Ea~~ 307 (374)
.+.+.++| +-.-+.++ +.++++.+++.|..+.+..++.. + +.+.+++. ..|.+.+ .+++...
T Consensus 63 ~~~i~~sG-GEPll~~~-l~~li~~~~~~g~~v~i~TNg~~-------~---~~l~~l~~~g~~~~v~isl~~~~~~~~~ 130 (191)
T TIGR02495 63 IDGVVITG-GEPTLQAG-LPDFLRKVRELGFEVKLDTNGSN-------P---RVLEELLEEGLVDYVAMDVKAPPEKYPE 130 (191)
T ss_pred CCeEEEEC-CcccCcHh-HHHHHHHHHHCCCeEEEEeCCCC-------H---HHHHHHHhcCCCcEEEEeccCChHHHHH
Confidence 35666766 21223344 77889999999988989888642 1 23344443 2466555 3444556
Q ss_pred hhCCC-----CHHHHHHHHHHcCC
Q 017305 308 LTGLR-----NPITAGQELLRKGL 326 (374)
Q Consensus 308 l~g~~-----~~~~~~~~l~~~g~ 326 (374)
++|.. ...+.++.+.+.|.
T Consensus 131 ~~g~~~~~~~~~~~~i~~l~~~gi 154 (191)
T TIGR02495 131 LYGLEKNGSNNILKSLEILLRSGI 154 (191)
T ss_pred HHCCCCchHHHHHHHHHHHHHcCC
Confidence 76642 23456677777775
No 115
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=58.01 E-value=96 Score=30.12 Aligned_cols=41 Identities=15% Similarity=0.132 Sum_probs=28.2
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHHhcC-CeEEEcCCCC
Q 017305 233 HSKVLFCNGYGFDELSPALIISALEYAAQVG-TSIFFDPGPR 273 (374)
Q Consensus 233 ~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g-~~v~~D~~~~ 273 (374)
+.++|++.......+..--+.++.+.|+++| +.+++|-...
T Consensus 140 ~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~a 181 (386)
T PF01053_consen 140 NTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFA 181 (386)
T ss_dssp TEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTT
T ss_pred cceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeecccc
Confidence 6788888866543344455788889999998 9999998753
No 116
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=56.51 E-value=1.2e+02 Score=26.97 Aligned_cols=84 Identities=14% Similarity=0.236 Sum_probs=50.2
Q ss_pred cEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecC-----HHHHHHhh
Q 017305 235 KVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLT-----SDEAESLT 309 (374)
Q Consensus 235 ~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N-----~~Ea~~l~ 309 (374)
+.|.++| +-.-+..+.+.++++.+++.|..+.++.++.... ..+.++.+++.+|.+.++ ++....+.
T Consensus 72 ~~V~~sG-GEPll~~~~~~~l~~~~k~~g~~i~l~TNG~~~~-------~~~~~~~ll~~~d~v~islk~~~~e~~~~~~ 143 (246)
T PRK11145 72 GGVTASG-GEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRR-------YDPVIDELLDVTDLVMLDLKQMNDEIHQNLV 143 (246)
T ss_pred CeEEEeC-ccHhcCHHHHHHHHHHHHHcCCCEEEECCCCCCc-------chHHHHHHHHhCCEEEECCCcCChhhccccc
Confidence 3566665 2122456777789999999999999998876411 124455666677876554 33344566
Q ss_pred CCCC--HHHHHHHHHHcCC
Q 017305 310 GLRN--PITAGQELLRKGL 326 (374)
Q Consensus 310 g~~~--~~~~~~~l~~~g~ 326 (374)
|... ..+..+.+.+.|.
T Consensus 144 g~~~~~~l~~i~~l~~~g~ 162 (246)
T PRK11145 144 GVSNHRTLEFARYLAKRNQ 162 (246)
T ss_pred CCChHHHHHHHHHHHhCCC
Confidence 6422 2233455666664
No 117
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=55.91 E-value=1.9e+02 Score=27.63 Aligned_cols=28 Identities=18% Similarity=0.257 Sum_probs=21.3
Q ss_pred cCCcHHHHHHHHHHcCCCeEEEEEecCc
Q 017305 127 EAGGNCNVAIAAARLGLDCVTIGHVGNE 154 (374)
Q Consensus 127 ~GG~a~NvA~~larLG~~~~~v~~vG~D 154 (374)
.||++.|+.-.+.+.|.+-.-+-.+-.|
T Consensus 25 vGg~G~n~v~~l~~~~~~~~~~iainTD 52 (349)
T TIGR00065 25 VGGGGNNTVNRMLEEGVEGVEFIAINTD 52 (349)
T ss_pred eCCcHHHHHHHHHHcCCCceEEEEEECC
Confidence 4899999999999998664444455667
No 118
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=54.99 E-value=1.1e+02 Score=29.42 Aligned_cols=60 Identities=17% Similarity=0.158 Sum_probs=40.3
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCH
Q 017305 233 HSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTS 302 (374)
Q Consensus 233 ~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~ 302 (374)
+.+.|++..++......-.+..+.+.|+++|+++++|-...... .++.+-..+||+.=+.
T Consensus 147 nTkavf~EtigNP~~~v~Die~ia~iAh~~gvpliVDNT~atpy----------l~rP~~hGADIVvHS~ 206 (426)
T COG2873 147 NTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFATPY----------LCRPIEHGADIVVHSA 206 (426)
T ss_pred ccceEEEEeccCCCccccCHHHHHHHHHHcCCcEEEecCCCcce----------ecchhhcCCCEEEEee
Confidence 46677777665444444456778889999999999997644321 1245556789888653
No 119
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=53.55 E-value=1.9e+02 Score=26.92 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=20.0
Q ss_pred cCCcHHHHHHHHHHcCCC-eEEEEEecCc
Q 017305 127 EAGGNCNVAIAAARLGLD-CVTIGHVGNE 154 (374)
Q Consensus 127 ~GG~a~NvA~~larLG~~-~~~v~~vG~D 154 (374)
.||++.|+.-.+.+.|.+ +.++ .+-.|
T Consensus 8 vGg~G~n~v~~l~~~~~~~~~~~-a~ntD 35 (304)
T cd02201 8 VGGGGGNAVNRMIESGLEGVEFI-AANTD 35 (304)
T ss_pred eCCcHHHHHHHHHHcCCCCceEE-EEECC
Confidence 489999999999999864 4443 34556
No 120
>PF11965 DUF3479: Domain of unknown function (DUF3479); InterPro: IPR022571 This functionally uncharacterised domain, found N-terminal to PF02514 from PFAM, occurs in magnesium chelatase subunit H, which is involved in chlorophyll biosynthesis. It is found in bacteria, green plants and archaea. It is around 160 amino acids in length.; GO: 0016851 magnesium chelatase activity
Probab=53.09 E-value=48 Score=27.93 Aligned_cols=54 Identities=9% Similarity=-0.013 Sum_probs=32.3
Q ss_pred CCCChHHHHHHHhhhccCcEEecCHHHHHHhhCCCCHHHHHHHHHHcCCCccEEEEEcC
Q 017305 278 SSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRNPITAGQELLRKGLRTKWVVVKMG 336 (374)
Q Consensus 278 ~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~~~~~~~~~~l~~~g~~~~~vvvT~G 336 (374)
|..+++.++.+.+-+..+|+++.|.-..+ +........|.++.-+++.++++..
T Consensus 41 l~~~~~~~~~~~~aia~ADii~~smlF~e-----d~v~~l~~~L~~~r~~~~a~i~~~s 94 (164)
T PF11965_consen 41 LERDPEALEECEAAIARADIIFGSMLFIE-----DHVRPLLPALEARRDHCPAMIIFES 94 (164)
T ss_pred hhcChHHHHHHHHHHHhCCEEEeehhhhH-----HHHHHHHHHHHHHHccCCEEEEEcC
Confidence 33466777888999999999998854332 2222233334433112366777765
No 121
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=53.01 E-value=41 Score=29.93 Aligned_cols=40 Identities=13% Similarity=0.176 Sum_probs=32.6
Q ss_pred cCCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCC
Q 017305 232 KHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPR 273 (374)
Q Consensus 232 ~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~ 273 (374)
.+.|.++++|+ ...+.+.+.++++..|+...++++-|+..
T Consensus 26 ~gtdai~vGGS--~~vt~~~~~~~v~~ik~~~lPvilfp~~~ 65 (223)
T TIGR01768 26 SGTDAILIGGS--QGVTYEKTDTLIEALRRYGLPIILFPSNP 65 (223)
T ss_pred cCCCEEEEcCC--CcccHHHHHHHHHHHhccCCCEEEeCCCc
Confidence 35799999987 35677888888888899999999988754
No 122
>PLN02546 glutathione reductase
Probab=51.66 E-value=43 Score=34.27 Aligned_cols=20 Identities=10% Similarity=0.097 Sum_probs=17.5
Q ss_pred HHHHHHHHHHcCCCeEEEEE
Q 017305 131 NCNVAIAAARLGLDCVTIGH 150 (374)
Q Consensus 131 a~NvA~~larLG~~~~~v~~ 150 (374)
+...|..++++|.+|.+|=.
T Consensus 91 G~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 91 GVRASRFASNFGASAAVCEL 110 (558)
T ss_pred HHHHHHHHHHCCCeEEEEec
Confidence 67889999999999999973
No 123
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=51.14 E-value=44 Score=29.79 Aligned_cols=40 Identities=13% Similarity=0.258 Sum_probs=33.1
Q ss_pred cCCcEEEEecCCCCCCCHHHHHHHHHHHH-hcCCeEEEcCCCC
Q 017305 232 KHSKVLFCNGYGFDELSPALIISALEYAA-QVGTSIFFDPGPR 273 (374)
Q Consensus 232 ~~~~~v~~~g~~~~~~~~~~~~~~~~~a~-~~g~~v~~D~~~~ 273 (374)
.+.|.+.++|+ .+...+.+.++++..| +.+.++++-|+..
T Consensus 40 ~GTDaImIGGS--~gvt~~~~~~~v~~ik~~~~lPvilfP~~~ 80 (240)
T COG1646 40 AGTDAIMIGGS--DGVTEENVDNVVEAIKERTDLPVILFPGSP 80 (240)
T ss_pred cCCCEEEECCc--ccccHHHHHHHHHHHHhhcCCCEEEecCCh
Confidence 46899999987 4667778888888888 7899999999864
No 124
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=49.29 E-value=1.7e+02 Score=28.02 Aligned_cols=77 Identities=12% Similarity=0.144 Sum_probs=50.7
Q ss_pred cCCcEEEEecCC--C----CCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhc-cCcEEecCHHH
Q 017305 232 KHSKVLFCNGYG--F----DELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLS-TSDVLLLTSDE 304 (374)
Q Consensus 232 ~~~~~v~~~g~~--~----~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~-~~Dil~~N~~E 304 (374)
.++|.||+++.. + .+++.+.+.++++.|+++|+++++-.+.... ....+...+.+..+.. .+|-++++.--
T Consensus 25 ~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~--~~~~~~~~~~l~~l~e~GvDaviv~Dpg 102 (347)
T COG0826 25 AGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLH--NDELETLERYLDRLVELGVDAVIVADPG 102 (347)
T ss_pred cCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccccc--cchhhHHHHHHHHHHHcCCCEEEEcCHH
Confidence 458999998551 1 2577788999999999999988777665431 1111222344555443 58999998776
Q ss_pred HHHhhC
Q 017305 305 AESLTG 310 (374)
Q Consensus 305 a~~l~g 310 (374)
+-.+..
T Consensus 103 ~i~l~~ 108 (347)
T COG0826 103 LIMLAR 108 (347)
T ss_pred HHHHHH
Confidence 655543
No 125
>PRK15452 putative protease; Provisional
Probab=49.00 E-value=1.2e+02 Score=30.02 Aligned_cols=43 Identities=7% Similarity=0.156 Sum_probs=33.1
Q ss_pred ccCCcEEEEecCCC------CCCCHHHHHHHHHHHHhcCCeEEEcCCCC
Q 017305 231 IKHSKVLFCNGYGF------DELSPALIISALEYAAQVGTSIFFDPGPR 273 (374)
Q Consensus 231 l~~~~~v~~~g~~~------~~~~~~~~~~~~~~a~~~g~~v~~D~~~~ 273 (374)
-.+||.||+++-.+ .+++.+.+.++++.|+++|+++++-.+..
T Consensus 21 ~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i 69 (443)
T PRK15452 21 AYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIA 69 (443)
T ss_pred HCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCc
Confidence 45899999976432 24566788999999999999998877643
No 126
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=48.93 E-value=2.1e+02 Score=28.33 Aligned_cols=40 Identities=10% Similarity=0.161 Sum_probs=25.4
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCC
Q 017305 233 HSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGP 272 (374)
Q Consensus 233 ~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~ 272 (374)
+.++|++...+......-.+.++.+.|+++|+.++.|...
T Consensus 147 ~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~~gi~livD~T~ 186 (432)
T PRK06702 147 KTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDNTL 186 (432)
T ss_pred CCeEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEECCC
Confidence 4567776643211111113677888899999999999864
No 127
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=48.10 E-value=2.2e+02 Score=28.11 Aligned_cols=40 Identities=15% Similarity=0.127 Sum_probs=24.8
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCC
Q 017305 234 SKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPR 273 (374)
Q Consensus 234 ~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~ 273 (374)
.++|++...........-+.++.+.|+++|+.+++|....
T Consensus 156 tk~V~~e~~~Np~~~v~di~~I~~la~~~gi~livD~t~a 195 (437)
T PRK05613 156 TKAFFGETFANPQADVLDIPAVAEVAHRNQVPLIVDNTIA 195 (437)
T ss_pred CeEEEEECCCCCCCcccCHHHHHHHHHHcCCeEEEECCCc
Confidence 4566654332211112336677788889999999998743
No 128
>PRK07050 cystathionine beta-lyase; Provisional
Probab=46.48 E-value=2.8e+02 Score=26.83 Aligned_cols=40 Identities=10% Similarity=0.076 Sum_probs=26.6
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCC
Q 017305 233 HSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGP 272 (374)
Q Consensus 233 ~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~ 272 (374)
+.++|+++...........+.++.+.|+++|+.+++|-..
T Consensus 150 ~tklV~le~p~Np~~~~~di~~I~~ia~~~gi~livD~a~ 189 (394)
T PRK07050 150 NTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTY 189 (394)
T ss_pred CCeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEECCc
Confidence 4566766543322334566778888888888888888764
No 129
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=46.28 E-value=52 Score=29.49 Aligned_cols=40 Identities=10% Similarity=0.199 Sum_probs=32.5
Q ss_pred cCCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCC
Q 017305 232 KHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPR 273 (374)
Q Consensus 232 ~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~ 273 (374)
.+.|.++++|+ .+...+.+.++++..|+...++++-|+..
T Consensus 31 ~gtdai~vGGS--~~vt~~~~~~~v~~ik~~~lPvilfp~~~ 70 (232)
T PRK04169 31 SGTDAIIVGGS--DGVTEENVDELVKAIKEYDLPVILFPGNI 70 (232)
T ss_pred cCCCEEEEcCC--CccchHHHHHHHHHHhcCCCCEEEeCCCc
Confidence 56799999987 35667788888888888889999988754
No 130
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=45.86 E-value=2.1e+02 Score=25.15 Aligned_cols=84 Identities=18% Similarity=0.259 Sum_probs=50.9
Q ss_pred cEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecC-----HHHHHHhh
Q 017305 235 KVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLT-----SDEAESLT 309 (374)
Q Consensus 235 ~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N-----~~Ea~~l~ 309 (374)
+.|.++| +-.-+.++.+.++++.+++.|..+.+..++....+ .+.+.+++...|.+.++ .+....+.
T Consensus 67 ~~I~~~G-GEPll~~~~~~~li~~~~~~g~~~~i~TNG~~~~~-------~~~~~~ll~~~d~v~isl~~~~~~~~~~~~ 138 (235)
T TIGR02493 67 GGVTFSG-GEPLLQPEFLSELFKACKELGIHTCLDTSGFLGGC-------TEAADELLEYTDLVLLDIKHFNPEKYKKLT 138 (235)
T ss_pred CeEEEeC-cccccCHHHHHHHHHHHHHCCCCEEEEcCCCCCcc-------HHHHHHHHHhCCEEEEeCCCCCHHHHHHHH
Confidence 4566665 22234466677999999999988899888742101 13345566667766554 44444555
Q ss_pred CCC--CHHHHHHHHHHcCC
Q 017305 310 GLR--NPITAGQELLRKGL 326 (374)
Q Consensus 310 g~~--~~~~~~~~l~~~g~ 326 (374)
|.. ...+..+.+.+.|.
T Consensus 139 g~~~~~v~~~i~~l~~~g~ 157 (235)
T TIGR02493 139 GVSLQPTLDFAKYLAKRNK 157 (235)
T ss_pred CCCcHHHHHHHHHHHhCCC
Confidence 542 23456666777765
No 131
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=44.77 E-value=3.2e+02 Score=26.88 Aligned_cols=133 Identities=15% Similarity=0.211 Sum_probs=74.2
Q ss_pred HHHHHH--HHcC-CCeEEEEEecCchhHHHHHHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccc--cc
Q 017305 133 NVAIAA--ARLG-LDCVTIGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGF--CS 207 (374)
Q Consensus 133 NvA~~l--arLG-~~~~~v~~vG~D~~G~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~--~~ 207 (374)
.+|+-+ +.+| .+-.=+-.+|....|+.+...|.+.|+..-.| .+.+-+|.. ..
T Consensus 163 saAv~lA~~~~~~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~I----------------------aNRT~erA~~La~ 220 (414)
T COG0373 163 SAAVELAKRIFGSLKDKKVLVIGAGEMGELVAKHLAEKGVKKITI----------------------ANRTLERAEELAK 220 (414)
T ss_pred HHHHHHHHHHhcccccCeEEEEcccHHHHHHHHHHHhCCCCEEEE----------------------EcCCHHHHHHHHH
Confidence 444444 3466 46555666777889999999999998854322 111111111 10
Q ss_pred cCCCCCCchhhhhhcccHHHHhhccCCcEEEEecCCC-CCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHH
Q 017305 208 RADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGYGF-DELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQR 286 (374)
Q Consensus 208 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~~~g~~~-~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~ 286 (374)
..+. .. -.+ +++.+.+.++|+|+.+...+ .-+..+.+...++..+ + .+++|.+-+.. +.
T Consensus 221 ~~~~--~~-----~~l-~el~~~l~~~DvVissTsa~~~ii~~~~ve~a~~~r~-~--~livDiavPRd-ie-------- 280 (414)
T COG0373 221 KLGA--EA-----VAL-EELLEALAEADVVISSTSAPHPIITREMVERALKIRK-R--LLIVDIAVPRD-VE-------- 280 (414)
T ss_pred HhCC--ee-----ecH-HHHHHhhhhCCEEEEecCCCccccCHHHHHHHHhccc-C--eEEEEecCCCC-CC--------
Confidence 0000 00 011 45567789999998875543 3344555555554322 2 79999975432 21
Q ss_pred HHHhhhccCcEEecCHHHHHHhh
Q 017305 287 ALSYFLSTSDVLLLTSDEAESLT 309 (374)
Q Consensus 287 ~~~~ll~~~Dil~~N~~Ea~~l~ 309 (374)
...-...++...+-+++..+.
T Consensus 281 --~~v~~l~~v~l~~iDDL~~iv 301 (414)
T COG0373 281 --PEVGELPNVFLYTIDDLEEIV 301 (414)
T ss_pred --ccccCcCCeEEEehhhHHHHH
Confidence 233344567777777777664
No 132
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=43.62 E-value=2.6e+02 Score=27.56 Aligned_cols=41 Identities=20% Similarity=0.259 Sum_probs=26.4
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCC
Q 017305 233 HSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPR 273 (374)
Q Consensus 233 ~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~ 273 (374)
+.++|++...........-+.++.+.|+++|+.+++|....
T Consensus 149 ~TklV~~e~~~np~g~v~Di~~I~~la~~~gi~livD~t~a 189 (433)
T PRK08134 149 NTRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDSTFT 189 (433)
T ss_pred CCeEEEEECCCcccCcccCHHHHHHHHHHcCCEEEEECCCc
Confidence 45677776433211111236778888899999999998754
No 133
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=43.25 E-value=61 Score=26.46 Aligned_cols=35 Identities=14% Similarity=0.237 Sum_probs=22.7
Q ss_pred cHHHHHHHHHHcCCCeEEEEEecCchhHHHHHHHHHh
Q 017305 130 GNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQD 166 (374)
Q Consensus 130 ~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~~~L~~ 166 (374)
.+...+..+.++|.++...+.+++|. +.|.+.+++
T Consensus 28 n~~~l~~~l~~~G~~v~~~~~v~Dd~--~~i~~~l~~ 62 (144)
T TIGR00177 28 NGPLLAALLEEAGFNVSRLGIVPDDP--EEIREILRK 62 (144)
T ss_pred cHHHHHHHHHHCCCeEEEEeecCCCH--HHHHHHHHH
Confidence 34566666777787777777777773 345555544
No 134
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=42.67 E-value=65 Score=27.25 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=12.4
Q ss_pred chhHHHHHHHHHhcCCccc
Q 017305 154 EIYGRFLLDVLQDEGIGMV 172 (374)
Q Consensus 154 D~~G~~i~~~L~~~GVd~~ 172 (374)
|.++.++.+.|++.|+++.
T Consensus 18 d~n~~~l~~~L~~~G~~v~ 36 (170)
T cd00885 18 DTNAAFLAKELAELGIEVY 36 (170)
T ss_pred EhHHHHHHHHHHHCCCEEE
Confidence 5566677777777766543
No 135
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=42.66 E-value=73 Score=26.80 Aligned_cols=51 Identities=12% Similarity=0.117 Sum_probs=40.0
Q ss_pred ccCCc-HHHHHHHHHHcCCCeEEEE-EecCchhHHHHHHHHHhcCCcccceee
Q 017305 126 WEAGG-NCNVAIAAARLGLDCVTIG-HVGNEIYGRFLLDVLQDEGIGMVGMSE 176 (374)
Q Consensus 126 ~~GG~-a~NvA~~larLG~~~~~v~-~vG~D~~G~~i~~~L~~~GVd~~~v~~ 176 (374)
+.||+ ..-.|+.|.+||.++.+++ ..|--+......+.....|.+...+..
T Consensus 7 fSGGKDSSLaA~iL~klgyev~LVTvnFGv~d~~k~A~~tA~~lgF~h~vl~L 59 (198)
T COG2117 7 FSGGKDSSLAALILDKLGYEVELVTVNFGVLDSWKYARETAAILGFPHEVLQL 59 (198)
T ss_pred ecCCCchhHHHHHHHHhCCCcEEEEEEeccccchhhHHHHHHHhCCCcceecc
Confidence 34888 6778999999999999998 577655777888888888887665543
No 136
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=42.52 E-value=74 Score=27.90 Aligned_cols=39 Identities=8% Similarity=0.158 Sum_probs=30.9
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHHh-cCCeEEEcCCCC
Q 017305 233 HSKVLFCNGYGFDELSPALIISALEYAAQ-VGTSIFFDPGPR 273 (374)
Q Consensus 233 ~~~~v~~~g~~~~~~~~~~~~~~~~~a~~-~g~~v~~D~~~~ 273 (374)
++|.+.++|+ .+...+.+.++++..|+ .++++++-|+..
T Consensus 24 gtDaI~VGGS--~gvt~~~~~~~v~~ik~~~~lPvilfp~~~ 63 (205)
T TIGR01769 24 GTDAIMVGGS--LGIVESNLDQTVKKIKKITNLPVILFPGNV 63 (205)
T ss_pred CCCEEEEcCc--CCCCHHHHHHHHHHHHhhcCCCEEEECCCc
Confidence 4799999987 45677888888888888 568999888754
No 137
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=40.77 E-value=3.6e+02 Score=26.40 Aligned_cols=74 Identities=8% Similarity=0.106 Sum_probs=46.9
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEc-CCCCCCCCCCCChHHHHHHHhhhcc-CcEEec-----CHHHH
Q 017305 233 HSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFD-PGPRGKSLSSGTPEEQRALSYFLST-SDVLLL-----TSDEA 305 (374)
Q Consensus 233 ~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D-~~~~~~~~~~~~~~~~~~~~~ll~~-~Dil~~-----N~~Ea 305 (374)
+.+.+.++|-.. ....+.+.++++.+++.+..+.+. .++.. +. + .+.+++++++ +|.+.+ |.+-.
T Consensus 73 ~~ggVtisGGGe-pl~~~~l~eLl~~lk~~gi~taI~~TnG~~--l~--~---~e~~~~L~~~gld~v~iSvka~dpe~h 144 (404)
T TIGR03278 73 RDTKVTISGGGD-VSCYPELEELTKGLSDLGLPIHLGYTSGKG--FD--D---PEIAEFLIDNGVREVSFTVFATDPELR 144 (404)
T ss_pred CCCEEEEECCcc-cccCHHHHHHHHHHHhCCCCEEEeCCCCcc--cC--C---HHHHHHHHHcCCCEEEEecccCCHHHH
Confidence 457777777542 333467889999999999988886 55432 11 1 3445666665 666644 45556
Q ss_pred HHhhCCCCH
Q 017305 306 ESLTGLRNP 314 (374)
Q Consensus 306 ~~l~g~~~~ 314 (374)
..++|....
T Consensus 145 ~kl~G~~~a 153 (404)
T TIGR03278 145 REWMKDPTP 153 (404)
T ss_pred HHHhCCCCH
Confidence 677886543
No 138
>PRK03673 hypothetical protein; Provisional
Probab=40.37 E-value=71 Score=31.12 Aligned_cols=37 Identities=19% Similarity=0.216 Sum_probs=29.5
Q ss_pred CcHHHHHHHHHHcCCCeEEEEEecCchhHHHHHHHHHhc
Q 017305 129 GGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQDE 167 (374)
Q Consensus 129 G~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~~~L~~~ 167 (374)
..+...+..|..+|.++...+.+|||. +.|.+.+++.
T Consensus 21 tN~~~la~~L~~~G~~v~~~~~v~D~~--~~i~~~l~~a 57 (396)
T PRK03673 21 TNAAWLADFFFHQGLPLSRRNTVGDNL--DALVAILRER 57 (396)
T ss_pred hHHHHHHHHHHHCCCEEEEEEEcCCCH--HHHHHHHHHH
Confidence 356777888899999999999999983 5577777764
No 139
>COG4809 Archaeal ADP-dependent phosphofructokinase/glucokinase [Carbohydrate transport and metabolism]
Probab=40.12 E-value=1.3e+02 Score=29.21 Aligned_cols=80 Identities=11% Similarity=0.038 Sum_probs=50.9
Q ss_pred HHhhccCCcEEEEecCCC-----CCCC-H----HHHHHHHHHHHh-cCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccC
Q 017305 227 VKTAIKHSKVLFCNGYGF-----DELS-P----ALIISALEYAAQ-VGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTS 295 (374)
Q Consensus 227 ~~~~l~~~~~v~~~g~~~-----~~~~-~----~~~~~~~~~a~~-~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~ 295 (374)
+.+..+..|..+++||.. .+-+ . +...+-++..|+ .++++=+...... +....++.+..+++.+
T Consensus 219 l~~i~~~vDgaiiSGyq~l~eey~dg~t~~~yle~s~e~i~~lk~~~~irvHlEfas~~-----d~~irk~i~~~il~~v 293 (466)
T COG4809 219 LDEIAKEVDGAIISGYQGLKEEYSDGSTYKYYLERSREDIKALKDRENIRVHLEFASIQ-----DRKIRKEILTNILSIV 293 (466)
T ss_pred HHHHhhhcceeeeechhhhhhhcCCCCcHHHHHHHHHHHHHHHhccccceEEEEecccc-----cHHHHHHHHHHHHhhh
Confidence 345567799999999963 1111 1 222333344455 5677777766543 1233455667799999
Q ss_pred cEEecCHHHHHHhhCC
Q 017305 296 DVLLLTSDEAESLTGL 311 (374)
Q Consensus 296 Dil~~N~~Ea~~l~g~ 311 (374)
+=+=+|+.|.+.+...
T Consensus 294 ~SvGldE~ElA~vl~v 309 (466)
T COG4809 294 YSVGLDEVELANVLNV 309 (466)
T ss_pred hhcCCCHHHHHHHHHh
Confidence 9999999999876543
No 140
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=39.42 E-value=58 Score=24.33 Aligned_cols=39 Identities=28% Similarity=0.296 Sum_probs=32.4
Q ss_pred CCcHHHHHHHHHHcCCCeEEEEEecCchhHHHHHHHHHhcCCcc
Q 017305 128 AGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQDEGIGM 171 (374)
Q Consensus 128 GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~~~L~~~GVd~ 171 (374)
+|.+...+..+...|.++.+++.+|.. ..+.|++.||.+
T Consensus 47 ~~~~~~~~~~l~~~~v~~vi~~~iG~~-----a~~~l~~~gI~v 85 (102)
T cd00562 47 GGEGKLAARLLALEGCDAVLVGGIGGP-----AAAKLEAAGIKP 85 (102)
T ss_pred CccchHHHHHHHHCCCcEEEEcccCcc-----HHHHHHHcCCEE
Confidence 356778899999999999999999977 456688889875
No 141
>PRK07582 cystathionine gamma-lyase; Validated
Probab=39.08 E-value=3.4e+02 Score=25.87 Aligned_cols=49 Identities=18% Similarity=0.115 Sum_probs=23.3
Q ss_pred cCCcHHHHHHHHHHcCC-CeEEEEEecCchhHHHHHHHHHhcCCccccee
Q 017305 127 EAGGNCNVAIAAARLGL-DCVTIGHVGNEIYGRFLLDVLQDEGIGMVGMS 175 (374)
Q Consensus 127 ~GG~a~NvA~~larLG~-~~~~v~~vG~D~~G~~i~~~L~~~GVd~~~v~ 175 (374)
.+|..++.+...+.++- +..++..-+-......+...+++.|+.+..+.
T Consensus 72 ~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~~v~~v~ 121 (366)
T PRK07582 72 PSGMAAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAPLGVTVREAP 121 (366)
T ss_pred CCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHHHhcCeEEEEEEC
Confidence 34555554444444543 33333322222222333455677888776654
No 142
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=38.93 E-value=59 Score=26.40 Aligned_cols=18 Identities=33% Similarity=0.621 Sum_probs=11.7
Q ss_pred chhHHHHHHHHHhcCCcc
Q 017305 154 EIYGRFLLDVLQDEGIGM 171 (374)
Q Consensus 154 D~~G~~i~~~L~~~GVd~ 171 (374)
|.++.++.+.|++.|+++
T Consensus 16 d~n~~~l~~~l~~~G~~v 33 (144)
T PF00994_consen 16 DSNGPFLAALLEELGIEV 33 (144)
T ss_dssp BHHHHHHHHHHHHTTEEE
T ss_pred EhHHHHHHHHHHHcCCee
Confidence 556666777777666654
No 143
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=38.84 E-value=2.2e+02 Score=27.46 Aligned_cols=49 Identities=16% Similarity=0.010 Sum_probs=22.3
Q ss_pred ccCCcHHHHHHHHHHcC-CCeEEEEEecCchhHHHHHHHHHhcCCcccce
Q 017305 126 WEAGGNCNVAIAAARLG-LDCVTIGHVGNEIYGRFLLDVLQDEGIGMVGM 174 (374)
Q Consensus 126 ~~GG~a~NvA~~larLG-~~~~~v~~vG~D~~G~~i~~~L~~~GVd~~~v 174 (374)
..+|.+++.+...+.+. .+..++....-...-..+.+.++..|+.+.++
T Consensus 82 ~ssG~~Ai~~al~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~v 131 (390)
T PRK08133 82 TASGMAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFARFGIETTFV 131 (390)
T ss_pred ECCHHHHHHHHHHHHhCCCCEEEEccCcchhHHHHHHHHHHHcCcEEEEE
Confidence 34666666554444443 23333332211112233445566777766544
No 144
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=38.00 E-value=1e+02 Score=29.58 Aligned_cols=49 Identities=12% Similarity=0.079 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHH
Q 017305 245 DELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEA 305 (374)
Q Consensus 245 ~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea 305 (374)
.+...+.+..+.+.+++.|++++-++-.. ..+..+..++|++++-..++
T Consensus 164 ~g~~~e~l~~L~~~~~~~Gl~~~t~v~d~------------~~~~~l~~~vd~lkI~s~~~ 212 (360)
T PRK12595 164 QGLGVEGLKILKQVADEYGLAVISEIVNP------------ADVEVALDYVDVIQIGARNM 212 (360)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEEeeCCH------------HHHHHHHHhCCeEEECcccc
Confidence 34556788888889999999998886532 22344455588888765554
No 145
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=37.52 E-value=94 Score=30.84 Aligned_cols=20 Identities=20% Similarity=0.222 Sum_probs=13.2
Q ss_pred HHHHHHHHHHcCCCeEEEEE
Q 017305 131 NCNVAIAAARLGLDCVTIGH 150 (374)
Q Consensus 131 a~NvA~~larLG~~~~~v~~ 150 (374)
++-.|..|++.|.+|.++=+
T Consensus 51 G~~aA~~LA~~G~~VlllEr 70 (450)
T PLN00093 51 GACAAETLAKGGIETFLIER 70 (450)
T ss_pred HHHHHHHHHhCCCcEEEEec
Confidence 34556677777877777643
No 146
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=37.41 E-value=3.5e+02 Score=25.26 Aligned_cols=27 Identities=11% Similarity=0.116 Sum_probs=20.4
Q ss_pred cCCcHHHHHHHHHHcCCC-eEEEEEecCc
Q 017305 127 EAGGNCNVAIAAARLGLD-CVTIGHVGNE 154 (374)
Q Consensus 127 ~GG~a~NvA~~larLG~~-~~~v~~vG~D 154 (374)
.||++.|++-.+.+.|.+ +.++ .+-.|
T Consensus 8 vGg~G~n~v~~~~~~~~~~~~~i-ainTd 35 (303)
T cd02191 8 FGGAGGNIVDKFLEYDKEGRSAV-AVNTD 35 (303)
T ss_pred ECchHHHHHHHHHHcCCCCccEE-EEECc
Confidence 489999999999998854 4444 55666
No 147
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=37.32 E-value=2.8e+02 Score=25.59 Aligned_cols=41 Identities=17% Similarity=0.114 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCH
Q 017305 250 ALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTS 302 (374)
Q Consensus 250 ~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~ 302 (374)
+.+.-+.+..++.|.+|+-|.-.. ...+...+++|++-+-.
T Consensus 74 eGL~iL~~vk~~~GlpvvTeV~~~------------~~~~~~ae~vDilQIgA 114 (281)
T PRK12457 74 EGLRIFEEVKARFGVPVITDVHEV------------EQAAPVAEVADVLQVPA 114 (281)
T ss_pred HHHHHHHHHHHHHCCceEEEeCCH------------HHHHHHhhhCeEEeeCc
Confidence 444444455667899999987532 34567788899997754
No 148
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=36.32 E-value=89 Score=25.02 Aligned_cols=17 Identities=29% Similarity=0.376 Sum_probs=9.2
Q ss_pred chhHHHHHHHHHhcCCc
Q 017305 154 EIYGRFLLDVLQDEGIG 170 (374)
Q Consensus 154 D~~G~~i~~~L~~~GVd 170 (374)
|.++.++.+.|++.|.+
T Consensus 18 d~n~~~l~~~l~~~G~~ 34 (133)
T cd00758 18 DTNGPALEALLEDLGCE 34 (133)
T ss_pred EchHHHHHHHHHHCCCE
Confidence 44555555555555544
No 149
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=35.25 E-value=1.4e+02 Score=26.42 Aligned_cols=67 Identities=18% Similarity=0.203 Sum_probs=38.5
Q ss_pred ccCCcEEEEecCCCCCCCHHHHHHHHHHHHhcC-CeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEec
Q 017305 231 IKHSKVLFCNGYGFDELSPALIISALEYAAQVG-TSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLL 300 (374)
Q Consensus 231 l~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g-~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~ 300 (374)
+.++.+|+++....... .+...+.++..++++ ..++++|-+... +...++. ...+..+++++|.+..
T Consensus 148 ~~~t~vvIiSDg~~~~~-~~~~~~~l~~l~~r~~rviwLnP~~~~~-~~~~~~~-~~~~~~~~~~v~~~~~ 215 (222)
T PF05762_consen 148 LRRTTVVIISDGWDTND-PEPLAEELRRLRRRGRRVIWLNPLPRAG-WPGYDPV-ARGYRAALPYVDACRP 215 (222)
T ss_pred ccCcEEEEEecccccCC-hHHHHHHHHHHHHhCCEEEEECCccccc-CCCCChH-HHHHHHhCChhhhcCC
Confidence 36778888886532333 334444445555555 556788875542 2223444 5567778888865543
No 150
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=35.15 E-value=1.1e+02 Score=30.14 Aligned_cols=36 Identities=19% Similarity=0.086 Sum_probs=27.5
Q ss_pred cHHHHHHHHHHcCCCeEEEEEecCchhHHHHHHHHHhc
Q 017305 130 GNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQDE 167 (374)
Q Consensus 130 ~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~~~L~~~ 167 (374)
.+...+..|..+|.++...+.++||. +.|.+.+++.
T Consensus 21 N~~~l~~~L~~~G~~v~~~~~v~Dd~--~~i~~~l~~a 56 (413)
T TIGR00200 21 NAQWLADFLAHQGLPLSRRTTVGDNP--ERLKTIIRIA 56 (413)
T ss_pred hHHHHHHHHHHCCCeEEEEEEeCCCH--HHHHHHHHHH
Confidence 45677788889999999999999984 3466666653
No 151
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=35.02 E-value=1.2e+02 Score=27.57 Aligned_cols=46 Identities=9% Similarity=0.034 Sum_probs=30.4
Q ss_pred CHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHH
Q 017305 248 SPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEA 305 (374)
Q Consensus 248 ~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea 305 (374)
..+.+..+.+.+++.|++++-++-... .++.+...+|++++-..+.
T Consensus 74 g~~gl~~l~~~~~~~Gl~~~t~~~d~~------------~~~~l~~~~d~lkI~s~~~ 119 (260)
T TIGR01361 74 GEEGLKLLRRAADEHGLPVVTEVMDPR------------DVEIVAEYADILQIGARNM 119 (260)
T ss_pred HHHHHHHHHHHHHHhCCCEEEeeCChh------------hHHHHHhhCCEEEECcccc
Confidence 356777788888999999888765321 1233445578888765554
No 152
>PRK01215 competence damage-inducible protein A; Provisional
Probab=34.35 E-value=1.3e+02 Score=27.59 Aligned_cols=35 Identities=17% Similarity=0.218 Sum_probs=27.0
Q ss_pred cHHHHHHHHHHcCCCeEEEEEecCchhHHHHHHHHHh
Q 017305 130 GNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQD 166 (374)
Q Consensus 130 ~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~~~L~~ 166 (374)
.+...+..|..+|.++.....++||. +.|.+.+++
T Consensus 24 n~~~l~~~L~~~G~~v~~~~~v~Dd~--~~I~~~l~~ 58 (264)
T PRK01215 24 NASWIARRLTYLGYTVRRITVVMDDI--EEIVSAFRE 58 (264)
T ss_pred hHHHHHHHHHHCCCeEEEEEEeCCCH--HHHHHHHHH
Confidence 45677888899999999999999984 336666655
No 153
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=34.25 E-value=1.4e+02 Score=28.62 Aligned_cols=79 Identities=11% Similarity=0.106 Sum_probs=46.9
Q ss_pred CCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHH------hhCC--------
Q 017305 246 ELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAES------LTGL-------- 311 (374)
Q Consensus 246 ~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~------l~g~-------- 311 (374)
+.-.+.+..+.+.+++.|.+++-++-.. +.++.+.+++|++++-..++.. +...
T Consensus 148 G~g~~gl~~L~~~~~e~Gl~~~tev~d~------------~~v~~~~~~~d~lqIga~~~~n~~LL~~va~t~kPVllk~ 215 (352)
T PRK13396 148 GHGESALELLAAAREATGLGIITEVMDA------------ADLEKIAEVADVIQVGARNMQNFSLLKKVGAQDKPVLLKR 215 (352)
T ss_pred CchHHHHHHHHHHHHHcCCcEEEeeCCH------------HHHHHHHhhCCeEEECcccccCHHHHHHHHccCCeEEEeC
Confidence 3334566666666778899998876532 2234455668999876555432 2111
Q ss_pred ------CCHHHHHHHHHHcCCCccEEEEEcCC
Q 017305 312 ------RNPITAGQELLRKGLRTKWVVVKMGP 337 (374)
Q Consensus 312 ------~~~~~~~~~l~~~g~~~~~vvvT~G~ 337 (374)
+++..+++.+.+.|-. +.+++-+|-
T Consensus 216 G~~~t~ee~~~A~e~i~~~Gn~-~viL~erG~ 246 (352)
T PRK13396 216 GMAATIDEWLMAAEYILAAGNP-NVILCERGI 246 (352)
T ss_pred CCCCCHHHHHHHHHHHHHcCCC-eEEEEecCC
Confidence 1345677788877742 455555555
No 154
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=33.64 E-value=2.7e+02 Score=23.00 Aligned_cols=93 Identities=15% Similarity=0.104 Sum_probs=53.0
Q ss_pred Eec-CchhHHHHHHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcccHHHH
Q 017305 150 HVG-NEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVK 228 (374)
Q Consensus 150 ~vG-~D~~G~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (374)
.+| +...|..+.+.|.+.|.++..+.+.+.... ...+..++.. +.. + .+.+.
T Consensus 3 V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~-----~~~~~~~~~~------------d~~---------d-~~~~~ 55 (183)
T PF13460_consen 3 VFGATGFVGRALAKQLLRRGHEVTALVRSPSKAE-----DSPGVEIIQG------------DLF---------D-PDSVK 55 (183)
T ss_dssp EETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHH-----HCTTEEEEES------------CTT---------C-HHHHH
T ss_pred EECCCChHHHHHHHHHHHCCCEEEEEecCchhcc-----ccccccccee------------eeh---------h-hhhhh
Confidence 345 467899999999998977766655443210 0011111111 110 0 13456
Q ss_pred hhccCCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcC
Q 017305 229 TAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDP 270 (374)
Q Consensus 229 ~~l~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~ 270 (374)
+.++++|.++...... ....+.+..+++.+++.|++-++-.
T Consensus 56 ~al~~~d~vi~~~~~~-~~~~~~~~~~~~a~~~~~~~~~v~~ 96 (183)
T PF13460_consen 56 AALKGADAVIHAAGPP-PKDVDAAKNIIEAAKKAGVKRVVYL 96 (183)
T ss_dssp HHHTTSSEEEECCHST-TTHHHHHHHHHHHHHHTTSSEEEEE
T ss_pred hhhhhcchhhhhhhhh-cccccccccccccccccccccceee
Confidence 6788999887764221 1225677888888888887544433
No 155
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=33.47 E-value=2.6e+02 Score=26.71 Aligned_cols=21 Identities=24% Similarity=0.197 Sum_probs=14.1
Q ss_pred HHHHHHHHHhcCCeEEEcCCC
Q 017305 252 IISALEYAAQVGTSIFFDPGP 272 (374)
Q Consensus 252 ~~~~~~~a~~~g~~v~~D~~~ 272 (374)
+.++.+.++++|+.+++|-..
T Consensus 144 l~~i~~la~~~g~~livD~t~ 164 (369)
T cd00614 144 IEAIAELAHEHGALLVVDNTF 164 (369)
T ss_pred HHHHHHHHHHcCCEEEEECCC
Confidence 456666677777777777653
No 156
>PRK06701 short chain dehydrogenase; Provisional
Probab=33.00 E-value=2.2e+02 Score=25.98 Aligned_cols=46 Identities=20% Similarity=0.150 Sum_probs=29.2
Q ss_pred CCcHHHHHHHHHHcCCCeEEEEEecCchhHHHHHHHHHhcCCcccce
Q 017305 128 AGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQDEGIGMVGM 174 (374)
Q Consensus 128 GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~~~L~~~GVd~~~v 174 (374)
||-+.++|..+++.|.++.+++.-..+ ..+.+.+.++..|.+...+
T Consensus 56 ggIG~~la~~l~~~G~~V~l~~r~~~~-~~~~~~~~~~~~~~~~~~~ 101 (290)
T PRK06701 56 SGIGRAVAVLFAKEGADIAIVYLDEHE-DANETKQRVEKEGVKCLLI 101 (290)
T ss_pred cHHHHHHHHHHHHCCCEEEEEeCCcch-HHHHHHHHHHhcCCeEEEE
Confidence 566889999999999988777653322 3344555566555444333
No 157
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=32.40 E-value=2.3e+02 Score=24.34 Aligned_cols=57 Identities=14% Similarity=0.146 Sum_probs=37.1
Q ss_pred cCCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcC-CCCCCCCCCCChHHHHHHHhhhc-cCcEEecC
Q 017305 232 KHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDP-GPRGKSLSSGTPEEQRALSYFLS-TSDVLLLT 301 (374)
Q Consensus 232 ~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~-~~~~~~~~~~~~~~~~~~~~ll~-~~Dil~~N 301 (374)
.++|++.+... .+...+.++++.++++|+++.++. ++.. ..+....+.. .+|++.++
T Consensus 75 ~Gad~i~vh~~----~~~~~~~~~i~~~~~~g~~~~~~~~~~~t---------~~~~~~~~~~~g~d~v~~~ 133 (206)
T TIGR03128 75 AGADIVTVLGV----ADDATIKGAVKAAKKHGKEVQVDLINVKD---------KVKRAKELKELGADYIGVH 133 (206)
T ss_pred cCCCEEEEecc----CCHHHHHHHHHHHHHcCCEEEEEecCCCC---------hHHHHHHHHHcCCCEEEEc
Confidence 46888876632 234456788899999999999884 4321 1122333444 79999875
No 158
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=32.18 E-value=1.1e+02 Score=27.11 Aligned_cols=53 Identities=19% Similarity=0.371 Sum_probs=35.1
Q ss_pred cCCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCe--EEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEec
Q 017305 232 KHSKVLFCNGYGFDELSPALIISALEYAAQVGTS--IFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLL 300 (374)
Q Consensus 232 ~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~--v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~ 300 (374)
.+++++.+- .+ ..+.+.+++++.|+.|++ ++++|... .+.+..++..+|++.+
T Consensus 83 agad~It~H----~E-~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp-----------~~~i~~~l~~vD~Vll 137 (220)
T COG0036 83 AGADIITFH----AE-ATEHIHRTIQLIKELGVKAGLVLNPATP-----------LEALEPVLDDVDLVLL 137 (220)
T ss_pred hCCCEEEEE----ec-cCcCHHHHHHHHHHcCCeEEEEECCCCC-----------HHHHHHHHhhCCEEEE
Confidence 357877664 23 334567788888999987 45565543 2456778888888754
No 159
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=31.59 E-value=2.3e+02 Score=25.80 Aligned_cols=42 Identities=10% Similarity=0.086 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCH
Q 017305 249 PALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTS 302 (374)
Q Consensus 249 ~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~ 302 (374)
.+.+.-+.+..++.|.+|+-|.-.. ..++...+++|++-+-.
T Consensus 59 eeGL~iL~~vk~~~glpvvTeV~~~------------~~~~~vae~vDilQIgA 100 (258)
T TIGR01362 59 EEGLKILQKVKEEFGVPILTDVHES------------SQCEPVAEVVDIIQIPA 100 (258)
T ss_pred HHHHHHHHHHHHHhCCceEEEeCCH------------HHHHHHHhhCcEEEeCc
Confidence 3555555566677899999987532 34566778899997755
No 160
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=31.54 E-value=35 Score=25.13 Aligned_cols=39 Identities=28% Similarity=0.511 Sum_probs=31.8
Q ss_pred CCcHHHHHHHHHHcCCCeEEEEEecCchhHHHHHHHHHhcCCcc
Q 017305 128 AGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQDEGIGM 171 (374)
Q Consensus 128 GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~~~L~~~GVd~ 171 (374)
+|.+...+..|...|.++.+++.+|.. ..+.|++.||.+
T Consensus 39 ~~~~~~~~~~l~~~~v~~li~~~iG~~-----~~~~L~~~gI~v 77 (94)
T PF02579_consen 39 GGGGDKIAKFLAEEGVDVLICGGIGEG-----AFRALKEAGIKV 77 (94)
T ss_dssp SCHSTHHHHHHHHTTESEEEESCSCHH-----HHHHHHHTTSEE
T ss_pred cccchhHHHHHHHcCCCEEEEeCCCHH-----HHHHHHHCCCEE
Confidence 566778888888899999999988765 567788999975
No 161
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=31.31 E-value=2.2e+02 Score=26.00 Aligned_cols=76 Identities=12% Similarity=0.066 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHH-----H-HHhhCCC----------
Q 017305 249 PALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDE-----A-ESLTGLR---------- 312 (374)
Q Consensus 249 ~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~E-----a-~~l~g~~---------- 312 (374)
.+.+.-+.+..++.|.+|+-|.-.. +.++...+++|++-+-..- + +.+....
T Consensus 67 eeGL~~L~~vk~~~GlpvvTeV~~~------------~~~~~v~~~~DilQIgArn~rn~~LL~a~g~t~kpV~lKrG~~ 134 (264)
T PRK05198 67 EEGLKILQEVKETFGVPVLTDVHEP------------EQAAPVAEVVDVLQIPAFLCRQTDLLVAAAKTGKVVNIKKGQF 134 (264)
T ss_pred HHHHHHHHHHHHHHCCceEEEeCCH------------HHHHHHHhhCcEEEECchhcchHHHHHHHhccCCeEEecCCCc
Confidence 3555555556667899999987532 3456778889999775522 1 2221111
Q ss_pred ----CHHHHHHHHHHcCCCccEEEEEcCCCce
Q 017305 313 ----NPITAGQELLRKGLRTKWVVVKMGPRGS 340 (374)
Q Consensus 313 ----~~~~~~~~l~~~g~~~~~vvvT~G~~Ga 340 (374)
++.-+++++.+.|- +.|+++ ++|.
T Consensus 135 ~t~~e~~~aaeyi~~~Gn--~~vilc--ERG~ 162 (264)
T PRK05198 135 LAPWDMKNVVDKVREAGN--DKIILC--ERGT 162 (264)
T ss_pred CCHHHHHHHHHHHHHcCC--CeEEEE--eCCC
Confidence 23456788888875 445555 3444
No 162
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=31.15 E-value=2.1e+02 Score=22.31 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=15.7
Q ss_pred CchhHHHHHHHHHhcCCcccc
Q 017305 153 NEIYGRFLLDVLQDEGIGMVG 173 (374)
Q Consensus 153 ~D~~G~~i~~~L~~~GVd~~~ 173 (374)
.+.+|..+.+.|.+.|.++-.
T Consensus 12 ~~~~g~~v~~~l~~~G~~v~~ 32 (116)
T PF13380_consen 12 PGKFGYRVLRNLKAAGYEVYP 32 (116)
T ss_dssp TTSHHHHHHHHHHHTT-EEEE
T ss_pred CCChHHHHHHHHHhCCCEEEE
Confidence 367899999999998866533
No 163
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=30.83 E-value=3.8e+02 Score=23.67 Aligned_cols=97 Identities=18% Similarity=0.161 Sum_probs=55.1
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcc-CcEEecC-----HHHHH
Q 017305 233 HSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLST-SDVLLLT-----SDEAE 306 (374)
Q Consensus 233 ~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~-~Dil~~N-----~~Ea~ 306 (374)
.++++=+. .....+...++++.+++.+.+++..--.... -| ..++..+.+.+.... +|++++- .++..
T Consensus 92 ~~d~vDiE----l~~~~~~~~~l~~~~~~~~~kvI~S~H~f~~-tp-~~~~l~~~~~~~~~~gaDivKia~~a~~~~D~~ 165 (228)
T TIGR01093 92 GPDFVDIE----LFLPDDAVKELINIAKKGGTKIIMSYHDFQK-TP-SWEEIVERLEKALSYGADIVKIAVMANSKEDVL 165 (228)
T ss_pred CCCEEEEE----ccCCHHHHHHHHHHHHHCCCEEEEeccCCCC-CC-CHHHHHHHHHHHHHhCCCEEEEEeccCCHHHHH
Confidence 35888776 2344567778888888888888775433221 11 123334455555554 8999872 33333
Q ss_pred HhhCCCCHHHHHHHHHHcCCCccEEEEEcCCCceEE
Q 017305 307 SLTGLRNPITAGQELLRKGLRTKWVVVKMGPRGSIL 342 (374)
Q Consensus 307 ~l~g~~~~~~~~~~l~~~g~~~~~vvvT~G~~Ga~~ 342 (374)
.+. ++..++.+. .+...+.+-+|+.|.+-
T Consensus 166 ~ll------~~~~~~~~~-~~~p~i~~~MG~~G~~S 194 (228)
T TIGR01093 166 TLL------EITNKVDEH-ADVPLITMSMGDRGKIS 194 (228)
T ss_pred HHH------HHHHHHHhc-CCCCEEEEeCCCCChhH
Confidence 332 222233222 22267899999999643
No 164
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=30.70 E-value=2.2e+02 Score=26.87 Aligned_cols=82 Identities=12% Similarity=0.075 Sum_probs=48.8
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEec-----CHHHHHHh
Q 017305 234 SKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLL-----TSDEAESL 308 (374)
Q Consensus 234 ~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~-----N~~Ea~~l 308 (374)
.+-+.+++.+ .+.-...+.++++.+++.|..+.++.++.. + +.++.+....|.+.+ +++....+
T Consensus 130 ~~~v~iSl~G-EPlL~p~l~eli~~~k~~Gi~~~L~TNG~~-------~---e~l~~L~~~~d~i~VSLda~~~e~~~~i 198 (322)
T PRK13762 130 PKHVAISLSG-EPTLYPYLPELIEEFHKRGFTTFLVTNGTR-------P---DVLEKLEEEPTQLYVSLDAPDEETYKKI 198 (322)
T ss_pred CCEEEEeCCc-cccchhhHHHHHHHHHHcCCCEEEECCCCC-------H---HHHHHHHhcCCEEEEEccCCCHHHHHHH
Confidence 3456666654 222244688999999999999999999753 1 233444344455433 44555666
Q ss_pred hCC---CC---HHHHHHHHHHcCC
Q 017305 309 TGL---RN---PITAGQELLRKGL 326 (374)
Q Consensus 309 ~g~---~~---~~~~~~~l~~~g~ 326 (374)
.+. .+ ..+.++.+.+.+.
T Consensus 199 ~~~~~~~~~~~vl~~L~~l~~~~~ 222 (322)
T PRK13762 199 NRPVIPDAWERILETLELLPSKKT 222 (322)
T ss_pred hCCCCCCcHHHHHHHHHHHHhCCC
Confidence 652 22 3455566666554
No 165
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=30.32 E-value=3.4e+02 Score=23.00 Aligned_cols=55 Identities=20% Similarity=0.292 Sum_probs=32.8
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEE---cCCCCCCCCCCCChHHHHHHHhhhccCcEEe
Q 017305 234 SKVLFCNGYGFDELSPALIISALEYAAQVGTSIFF---DPGPRGKSLSSGTPEEQRALSYFLSTSDVLL 299 (374)
Q Consensus 234 ~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~---D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~ 299 (374)
.|+|.++=..+ ++ +.+.++++.+...|+.|++ |.......+ +.+..+++.+|-+.
T Consensus 77 ~dvI~IDEaQF--f~-~~i~~l~~~~~~~g~~Vi~~GL~~df~~~~F--------~~~~~Ll~~Ad~i~ 134 (176)
T PF00265_consen 77 YDVIGIDEAQF--FD-EQIVQLVEILANKGIPVICAGLDTDFRGEPF--------GGSPRLLPLADKIT 134 (176)
T ss_dssp CSEEEESSGGG--ST-TTHHHHHHHHHHTT-EEEEEEESB-TTSSB---------TTHHHHHHH-SEEE
T ss_pred CCEEEEechHh--hH-HHHHHHHHHHHhCCCeEEEEeeCCccccCcc--------hhHHHHHhhCCeEE
Confidence 89999974322 22 4466788888888988764 555544322 23466777777665
No 166
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=30.19 E-value=1.2e+02 Score=27.11 Aligned_cols=39 Identities=8% Similarity=0.255 Sum_probs=24.8
Q ss_pred cCCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCC
Q 017305 232 KHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPR 273 (374)
Q Consensus 232 ~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~ 273 (374)
.+.|.++++|+. .+...+.+..+++.. .+.++++-|+..
T Consensus 31 ~gtDai~VGGS~-~~~~~d~vv~~ik~~--~~lPvilfPg~~ 69 (230)
T PF01884_consen 31 SGTDAIIVGGSD-TGVTLDNVVALIKRV--TDLPVILFPGSP 69 (230)
T ss_dssp TT-SEEEEE-ST-HCHHHHHHHHHHHHH--SSS-EEEETSTC
T ss_pred cCCCEEEECCCC-CccchHHHHHHHHhc--CCCCEEEeCCCh
Confidence 678999999875 344445555555544 788999988764
No 167
>PRK05968 hypothetical protein; Provisional
Probab=30.11 E-value=1.3e+02 Score=29.10 Aligned_cols=43 Identities=14% Similarity=0.073 Sum_probs=30.6
Q ss_pred hccCCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCC
Q 017305 230 AIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGP 272 (374)
Q Consensus 230 ~l~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~ 272 (374)
.+.+.++|++............+.++.+.|+++|+.+++|-..
T Consensus 144 ~i~~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~ 186 (389)
T PRK05968 144 ALPGAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSW 186 (389)
T ss_pred hcccCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCC
Confidence 3456678887644333444567888888999999999999754
No 168
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=29.93 E-value=1.2e+02 Score=24.12 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=10.6
Q ss_pred chhHHHHHHHHHhcCCcc
Q 017305 154 EIYGRFLLDVLQDEGIGM 171 (374)
Q Consensus 154 D~~G~~i~~~L~~~GVd~ 171 (374)
|..+.++.+.|++.|.++
T Consensus 17 d~~~~~l~~~l~~~G~~~ 34 (135)
T smart00852 17 DSNGPALAELLTELGIEV 34 (135)
T ss_pred cCcHHHHHHHHHHCCCeE
Confidence 445666666666666543
No 169
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=29.84 E-value=1.1e+02 Score=25.08 Aligned_cols=33 Identities=12% Similarity=0.069 Sum_probs=19.1
Q ss_pred HHHHHHHHHHcCCCeEEEEEecCchhHHHHHHHHH
Q 017305 131 NCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQ 165 (374)
Q Consensus 131 a~NvA~~larLG~~~~~v~~vG~D~~G~~i~~~L~ 165 (374)
+...+..+.++|.++...+.+.+|. +.+.+.++
T Consensus 22 ~~~l~~~l~~~G~~v~~~~~v~Dd~--~~i~~~l~ 54 (152)
T cd00886 22 GPALVELLEEAGHEVVAYEIVPDDK--DEIREALI 54 (152)
T ss_pred HHHHHHHHHHcCCeeeeEEEcCCCH--HHHHHHHH
Confidence 3445555666677777777777663 33444444
No 170
>PRK03670 competence damage-inducible protein A; Provisional
Probab=29.67 E-value=93 Score=28.25 Aligned_cols=35 Identities=17% Similarity=0.225 Sum_probs=26.2
Q ss_pred cHHHHHHHHHHcCCCeEEEEEecCchhHHHHHHHHHh
Q 017305 130 GNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQD 166 (374)
Q Consensus 130 ~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~~~L~~ 166 (374)
.+...+..|..+|.++..+..+++|. +.|.+.+++
T Consensus 21 N~~~la~~L~~~G~~v~~~~iV~Dd~--~~I~~~l~~ 55 (252)
T PRK03670 21 NSAFIAQKLTEKGYWVRRITTVGDDV--EEIKSVVLE 55 (252)
T ss_pred hHHHHHHHHHHCCCEEEEEEEcCCCH--HHHHHHHHH
Confidence 45567777888999999999999983 445566554
No 171
>PRK05866 short chain dehydrogenase; Provisional
Probab=29.11 E-value=1.9e+02 Score=26.57 Aligned_cols=43 Identities=21% Similarity=0.142 Sum_probs=27.7
Q ss_pred CCcHHHHHHHHHHcCCCeEEEEEecCchhHHHHHHHHHhcCCccc
Q 017305 128 AGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQDEGIGMV 172 (374)
Q Consensus 128 GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~~~L~~~GVd~~ 172 (374)
||-|..+|..+++-|.++.++++ +....+.+.+.+.+.|.+..
T Consensus 50 ggIG~~la~~La~~G~~Vi~~~R--~~~~l~~~~~~l~~~~~~~~ 92 (293)
T PRK05866 50 SGIGEAAAEQFARRGATVVAVAR--REDLLDAVADRITRAGGDAM 92 (293)
T ss_pred cHHHHHHHHHHHHCCCEEEEEEC--CHHHHHHHHHHHHhcCCcEE
Confidence 56688999999999988877654 22234455555655554443
No 172
>PRK00549 competence damage-inducible protein A; Provisional
Probab=28.85 E-value=1e+02 Score=30.29 Aligned_cols=35 Identities=26% Similarity=0.248 Sum_probs=27.9
Q ss_pred cHHHHHHHHHHcCCCeEEEEEecCchhHHHHHHHHHh
Q 017305 130 GNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQD 166 (374)
Q Consensus 130 ~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~~~L~~ 166 (374)
.+...+..|..+|.++..++.++||. +.|.+.+++
T Consensus 21 N~~~L~~~L~~~G~~v~~~~~v~Dd~--~~I~~~l~~ 55 (414)
T PRK00549 21 NAQFLSEKLAELGIDVYHQTVVGDNP--ERLLSALEI 55 (414)
T ss_pred hHHHHHHHHHHCCCeEEEEEEeCCCH--HHHHHHHHH
Confidence 45677888899999999999999984 456677765
No 173
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=28.84 E-value=1.9e+02 Score=27.35 Aligned_cols=48 Identities=19% Similarity=0.157 Sum_probs=30.8
Q ss_pred CCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcc-CcEEecCHHHH
Q 017305 246 ELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLST-SDVLLLTSDEA 305 (374)
Q Consensus 246 ~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~-~Dil~~N~~Ea 305 (374)
+++.+....+.+++++.|+.++-.|-. . +.++.+..+ +|++++--.|+
T Consensus 72 ~l~~e~~~~L~~~~~~~Gi~~~stpfd---------~---~svd~l~~~~v~~~KIaS~~~ 120 (329)
T TIGR03569 72 ELSEEDHRELKEYCESKGIEFLSTPFD---------L---ESADFLEDLGVPRFKIPSGEI 120 (329)
T ss_pred CCCHHHHHHHHHHHHHhCCcEEEEeCC---------H---HHHHHHHhcCCCEEEECcccc
Confidence 456788889999999999887666532 1 122233344 78887765554
No 174
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=28.55 E-value=2.2e+02 Score=28.42 Aligned_cols=56 Identities=16% Similarity=0.148 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCC--------CCChHHHHHHHhhhccCcEEecC
Q 017305 246 ELSPALIISALEYAAQVGTSIFFDPGPRGKSLS--------SGTPEEQRALSYFLSTSDVLLLT 301 (374)
Q Consensus 246 ~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~--------~~~~~~~~~~~~ll~~~Dil~~N 301 (374)
..+.+.+.++.+.|+++|+++++|......+-| -.+...++...++..++|.+.+|
T Consensus 194 pvs~~~m~~I~elA~~~Gl~Vi~DaAra~gna~fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S 257 (460)
T PRK13237 194 PVSMANMRAVRELCDKHGIKVFFDATRCVENAYFIKEREEGYQDKSIKEIVHEMFSYADGCTMS 257 (460)
T ss_pred eCCHHhHHHHHHHHHHcCCEEEEECcchhcChhhhcccccccCCCcHhHHhhhccCcCcEEEEe
Confidence 345677889999999999999999865432111 00112245567778888888766
No 175
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=28.51 E-value=3.3e+02 Score=26.39 Aligned_cols=21 Identities=24% Similarity=0.172 Sum_probs=13.4
Q ss_pred HHHHHHHHHhcCCeEEEcCCC
Q 017305 252 IISALEYAAQVGTSIFFDPGP 272 (374)
Q Consensus 252 ~~~~~~~a~~~g~~v~~D~~~ 272 (374)
+.++.+.|+++|+.+++|-..
T Consensus 168 l~~I~~la~~~gi~livD~t~ 188 (398)
T PRK08249 168 IERLAAAAKKVGALVVVDNTF 188 (398)
T ss_pred HHHHHHHHHHcCCEEEEECCc
Confidence 445566666777777777654
No 176
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=28.00 E-value=79 Score=31.41 Aligned_cols=31 Identities=39% Similarity=0.613 Sum_probs=0.0
Q ss_pred CCCccEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCc-HHHHHHHHHHcCCCeEEE
Q 017305 79 VKSIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGG-NCNVAIAAARLGLDCVTI 148 (374)
Q Consensus 79 ~~~~~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~-a~NvA~~larLG~~~~~v 148 (374)
|+.+||+||| ||. +...|..+++.|.+|.++
T Consensus 1 m~~~DvvVIG---------------------------------------~GpaG~~AA~~aa~~G~~V~li 32 (466)
T PRK06115 1 MASYDVVIIG---------------------------------------GGPGGYNAAIRAGQLGLKVACV 32 (466)
T ss_pred CCcccEEEEC---------------------------------------CCHHHHHHHHHHHhCCCeEEEE
No 177
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=27.99 E-value=71 Score=32.92 Aligned_cols=22 Identities=18% Similarity=0.117 Sum_probs=17.1
Q ss_pred CCcHHHHHHHHHHcCCCeEEEE
Q 017305 128 AGGNCNVAIAAARLGLDCVTIG 149 (374)
Q Consensus 128 GG~a~NvA~~larLG~~~~~v~ 149 (374)
|+++.-.|+.+++.|.+|.++.
T Consensus 12 G~AGl~AAi~Aa~~G~~V~lie 33 (589)
T PRK08641 12 GLAGLMATIKAAEAGVHVDLFS 33 (589)
T ss_pred hHHHHHHHHHHHHcCCcEEEEE
Confidence 3446678888888998888876
No 178
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=27.75 E-value=79 Score=31.04 Aligned_cols=31 Identities=19% Similarity=0.285 Sum_probs=0.0
Q ss_pred CCCccEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCc-HHHHHHHHHHcCCCeEEE
Q 017305 79 VKSIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGG-NCNVAIAAARLGLDCVTI 148 (374)
Q Consensus 79 ~~~~~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~-a~NvA~~larLG~~~~~v 148 (374)
|+.+||+||| ||. +..+|..++++|.+|.++
T Consensus 1 ~~~~dvvVIG---------------------------------------~GpaG~~aA~~l~~~g~~V~li 32 (438)
T PRK07251 1 MLTYDLIVIG---------------------------------------FGKAGKTLAAKLASAGKKVALV 32 (438)
T ss_pred CCccCEEEEC---------------------------------------CCHHHHHHHHHHHhCCCEEEEE
No 179
>PF10678 DUF2492: Protein of unknown function (DUF2492); InterPro: IPR019620 This entry describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulphatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulphur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulphatase/maturase systems.
Probab=27.37 E-value=1.3e+02 Score=21.86 Aligned_cols=37 Identities=19% Similarity=0.188 Sum_probs=31.7
Q ss_pred HHHHHHHHcCCCeEEEEEecCchhHHHHHHHHHhcCC
Q 017305 133 NVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQDEGI 169 (374)
Q Consensus 133 NvA~~larLG~~~~~v~~vG~D~~G~~i~~~L~~~GV 169 (374)
-.+...+++|.++.|.++=++|-..+.+++.|.+.|=
T Consensus 25 L~~ai~~~FG~~arFhTCSae~m~a~eLv~FL~~rgK 61 (78)
T PF10678_consen 25 LKAAIIEKFGEDARFHTCSAEGMTADELVDFLEERGK 61 (78)
T ss_pred HHHHHHHHhCCCceEEecCCCCCCHHHHHHHHHHcCC
Confidence 3455578999999999999999999999999998664
No 180
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=27.37 E-value=1e+02 Score=23.01 Aligned_cols=39 Identities=31% Similarity=0.482 Sum_probs=31.2
Q ss_pred CcHHHHHHHHHHcCCCeEEEEEecCchhHHHHHHHHHhcCCccc
Q 017305 129 GGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQDEGIGMV 172 (374)
Q Consensus 129 G~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~~~L~~~GVd~~ 172 (374)
|.+...+..|...|.++.+++.+|.. ..+.|++.||.+-
T Consensus 50 ~~~~~~~~~l~~~~v~~vi~~~iG~~-----~~~~l~~~gI~v~ 88 (103)
T cd00851 50 GAGGKAAEFLADEGVDVVIVGGIGPR-----ALNKLRNAGIKVY 88 (103)
T ss_pred CCchHHHHHHHHcCCCEEEeCCCCcC-----HHHHHHHCCCEEE
Confidence 45677888888899999999988865 5667888899763
No 181
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=27.36 E-value=4.4e+02 Score=25.27 Aligned_cols=21 Identities=24% Similarity=0.237 Sum_probs=13.1
Q ss_pred HHHHHHHHHhcCCeEEEcCCC
Q 017305 252 IISALEYAAQVGTSIFFDPGP 272 (374)
Q Consensus 252 ~~~~~~~a~~~g~~v~~D~~~ 272 (374)
+.++.+.++++|+.+++|-..
T Consensus 158 l~~I~~la~~~gi~livD~a~ 178 (380)
T TIGR01325 158 IAALAELAHAIGALLVVDNVF 178 (380)
T ss_pred HHHHHHHHHHcCCEEEEECCC
Confidence 455556666667777777653
No 182
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=26.94 E-value=4.2e+02 Score=22.98 Aligned_cols=44 Identities=14% Similarity=0.095 Sum_probs=30.2
Q ss_pred HHHHhhccCCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEE
Q 017305 225 AEVKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFF 268 (374)
Q Consensus 225 ~~~~~~l~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~ 268 (374)
+.+.+.+++++.+++......+...+....+++.|++.|++.++
T Consensus 56 ~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v 99 (233)
T PF05368_consen 56 ESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFV 99 (233)
T ss_dssp HHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEE
T ss_pred HHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceEE
Confidence 44567789999887764322233356778899999999987666
No 183
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=26.93 E-value=5.9e+02 Score=24.70 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=15.1
Q ss_pred HHHHHHHHHhcCCeEEEcCCCC
Q 017305 252 IISALEYAAQVGTSIFFDPGPR 273 (374)
Q Consensus 252 ~~~~~~~a~~~g~~v~~D~~~~ 273 (374)
+.++.+.|+++|+.+++|-...
T Consensus 174 l~~I~~la~~~g~~vivD~a~a 195 (403)
T PRK07810 174 IAAVSELAHAAGAKVVLDNVFA 195 (403)
T ss_pred HHHHHHHHHHcCCEEEEECCCC
Confidence 5566667777777777776643
No 184
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=26.80 E-value=1.8e+02 Score=23.92 Aligned_cols=45 Identities=13% Similarity=-0.098 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhc-CCeEEEcCCCCCCCCCCCChHHH--HHHHhhhccCcEEe
Q 017305 249 PALIISALEYAAQV-GTSIFFDPGPRGKSLSSGTPEEQ--RALSYFLSTSDVLL 299 (374)
Q Consensus 249 ~~~~~~~~~~a~~~-g~~v~~D~~~~~~~~~~~~~~~~--~~~~~ll~~~Dil~ 299 (374)
.+.+.++++.+|+. +...+++.+++.. .+.. ....++++++|+++
T Consensus 80 ~~~l~~ll~~~k~~~~~~~~~~~tG~~~------~~~~~~~~~~~~l~~~D~li 127 (154)
T TIGR02491 80 VEELIELVKKIKAEFPEKDIWLWTGYTW------EEILEDEKHLEVLKYIDVLV 127 (154)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEeeCccH------HHHhcchhHHHHHhhCCEEE
Confidence 47888999999876 5555555554431 0000 01236788999763
No 185
>PRK15447 putative protease; Provisional
Probab=26.59 E-value=5.2e+02 Score=23.97 Aligned_cols=73 Identities=12% Similarity=0.116 Sum_probs=45.0
Q ss_pred cCCcEEEEecCCC---CCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcc-CcEE-ecCHHHHH
Q 017305 232 KHSKVLFCNGYGF---DELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLST-SDVL-LLTSDEAE 306 (374)
Q Consensus 232 ~~~~~v~~~g~~~---~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~-~Dil-~~N~~Ea~ 306 (374)
.++|.||++.-.. .+++.+.+.++++.++++|++|++-...-.. . +...+.+.+++.. .|.| .-|-.++.
T Consensus 27 ~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkvyva~p~i~~--~---~~e~~~l~~~l~~~~~~v~v~d~g~l~ 101 (301)
T PRK15447 27 SPVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEVVLSTLALVE--A---PSELKELRRLVENGEFLVEANDLGAVR 101 (301)
T ss_pred CCCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEEEEEeccccc--C---HHHHHHHHHHHhcCCCEEEEeCHHHHH
Confidence 3699999975432 2477889999999999999999986543210 0 1122334444443 4534 44666555
Q ss_pred Hhh
Q 017305 307 SLT 309 (374)
Q Consensus 307 ~l~ 309 (374)
.+-
T Consensus 102 ~~~ 104 (301)
T PRK15447 102 LLA 104 (301)
T ss_pred HHH
Confidence 443
No 186
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=26.27 E-value=2.2e+02 Score=27.08 Aligned_cols=48 Identities=15% Similarity=0.115 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHH
Q 017305 246 ELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEA 305 (374)
Q Consensus 246 ~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea 305 (374)
++..+.+..+.+.+++.|.+++-++-.. +.++.+..++|++++-..+.
T Consensus 140 G~g~~gL~~L~~~~~~~Gl~v~tev~d~------------~~~~~l~~~vd~lqIgAr~~ 187 (335)
T PRK08673 140 GLGEEGLKLLAEAREETGLPIVTEVMDP------------RDVELVAEYVDILQIGARNM 187 (335)
T ss_pred cccHHHHHHHHHHHHHcCCcEEEeeCCH------------HHHHHHHHhCCeEEECcccc
Confidence 3445667777777889999998876432 22344556689998765554
No 187
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=26.11 E-value=3.3e+02 Score=22.86 Aligned_cols=107 Identities=16% Similarity=0.238 Sum_probs=49.8
Q ss_pred HHHHHHHHhcCCcccceee----CCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCc-------hhhhhhccc-H
Q 017305 158 RFLLDVLQDEGIGMVGMSE----DTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEP-------AFSWMNKLS-A 225 (374)
Q Consensus 158 ~~i~~~L~~~GVd~~~v~~----~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~-------~~~~~~~l~-~ 225 (374)
..+.+.|++.|+.+.++.. ..+. ..|+.++-+. +|++..+...+....+ ..+.++.+. +
T Consensus 17 ~k~i~~l~~~~~~v~Gf~t~evr~~g~--------r~GF~iv~l~-~g~~~~la~~~~~~~~~vgky~v~~e~fe~~~~~ 87 (168)
T PF03266_consen 17 KKVIEELKKKGLPVGGFYTEEVRENGR--------RIGFDIVDLN-SGEEAILARVDFRSGPRVGKYFVDLESFEEIGLP 87 (168)
T ss_dssp HHHHHHHHHTCGGEEEEEEEEEETTSS--------EEEEEEEET--TS-EEEEEETTSS-SCECTTCEE-HHHHHCCCCC
T ss_pred HHHHHHhhccCCccceEEeecccCCCc--------eEEEEEEECc-CCCccccccccccccccCCCEEEcHHHHHHHHHH
Confidence 4455667666777766643 2222 2455555442 4555544332211111 001112221 2
Q ss_pred HHHhhccCCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCC
Q 017305 226 EVKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPR 273 (374)
Q Consensus 226 ~~~~~l~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~ 273 (374)
.+...+.++++++++=.+..+.......+.+..+-..+.+++.-....
T Consensus 88 ~L~~~~~~~~liviDEIG~mEl~~~~F~~~v~~~l~s~~~vi~vv~~~ 135 (168)
T PF03266_consen 88 ALRNALSSSDLIVIDEIGKMELKSPGFREAVEKLLDSNKPVIGVVHKR 135 (168)
T ss_dssp CCHHHHHCCHEEEE---STTCCC-CHHHHHHHHHHCTTSEEEEE--SS
T ss_pred HHHhhcCCCCEEEEeccchhhhcCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 223334688999999888777666555555555555666666655433
No 188
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=26.02 E-value=93 Score=30.54 Aligned_cols=31 Identities=19% Similarity=0.346 Sum_probs=0.0
Q ss_pred CCCccEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCc-HHHHHHHHHHcCCCeEEE
Q 017305 79 VKSIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGG-NCNVAIAAARLGLDCVTI 148 (374)
Q Consensus 79 ~~~~~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~-a~NvA~~larLG~~~~~v 148 (374)
|+.+||++|| ||. +...|..|++.|.++.++
T Consensus 1 ~~~yDvvVIG---------------------------------------gGpaGl~aA~~la~~g~~V~li 32 (441)
T PRK08010 1 MNKYQAVIIG---------------------------------------FGKAGKTLAVTLAKAGWRVALI 32 (441)
T ss_pred CCcCCEEEEC---------------------------------------CCHhHHHHHHHHHHCCCeEEEE
No 189
>PRK06370 mercuric reductase; Validated
Probab=25.65 E-value=92 Score=30.85 Aligned_cols=32 Identities=31% Similarity=0.420 Sum_probs=0.0
Q ss_pred CCCCccEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCc-HHHHHHHHHHcCCCeEEE
Q 017305 78 GVKSIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGG-NCNVAIAAARLGLDCVTI 148 (374)
Q Consensus 78 ~~~~~~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~-a~NvA~~larLG~~~~~v 148 (374)
+|..+||+||| ||. +...|+.++++|.+|.++
T Consensus 2 ~~~~~DvvVIG---------------------------------------~GpaG~~aA~~aa~~G~~v~li 34 (463)
T PRK06370 2 PAQRYDAIVIG---------------------------------------AGQAGPPLAARAAGLGMKVALI 34 (463)
T ss_pred CCccccEEEEC---------------------------------------CCHHHHHHHHHHHhCCCeEEEE
No 190
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=25.63 E-value=4.2e+02 Score=24.51 Aligned_cols=77 Identities=13% Similarity=0.066 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHH---h---h--CC---------
Q 017305 249 PALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAES---L---T--GL--------- 311 (374)
Q Consensus 249 ~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~---l---~--g~--------- 311 (374)
.+.+.-+.+..++.|.+|+-|.-.. +.++...+++|++-+-..-.+. | . |.
T Consensus 73 eeGL~iL~~vk~~~glpvvTeV~~~------------~q~~~vae~~DilQIgAr~~rqtdLL~a~~~tgkpV~lKkGq~ 140 (290)
T PLN03033 73 AEGLKILEKVKVAYDLPIVTDVHES------------SQCEAVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQF 140 (290)
T ss_pred HHHHHHHHHHHHHHCCceEEeeCCH------------HHHHHHHhhCcEEeeCcHHHHHHHHHHHHHccCCeEEeCCCCC
Confidence 3455555555567899999997532 3456778889999775443322 1 1 11
Q ss_pred ---CCHHHHHHHHHHcCCCccEEEEEcCCCceE
Q 017305 312 ---RNPITAGQELLRKGLRTKWVVVKMGPRGSI 341 (374)
Q Consensus 312 ---~~~~~~~~~l~~~g~~~~~vvvT~G~~Ga~ 341 (374)
+++..+++++.+.|- +.|+++ ++|..
T Consensus 141 ~t~~e~~~aaeki~~~GN--~~viLc--ERG~t 169 (290)
T PLN03033 141 CAPSVMRNSAEKVRLAGN--PNVMVC--ERGTM 169 (290)
T ss_pred CCHHHHHHHHHHHHHcCC--CcEEEE--eCCCC
Confidence 034456788888875 445555 44543
No 191
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=25.18 E-value=3.9e+02 Score=24.27 Aligned_cols=102 Identities=17% Similarity=0.266 Sum_probs=60.3
Q ss_pred HHHHhhccCCcEEEEecCCC--------C-CC----C-HHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHh
Q 017305 225 AEVKTAIKHSKVLFCNGYGF--------D-EL----S-PALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSY 290 (374)
Q Consensus 225 ~~~~~~l~~~~~v~~~g~~~--------~-~~----~-~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ 290 (374)
.+..+.++++++++.+|++. . .. + .|.+..+++.+.+.+.+|+|=-+-.. . .....+.+..
T Consensus 56 ~e~~~~i~~A~li~pDG~gvV~~ar~~~g~~~~~rv~G~Dl~~~Ll~~a~~~~~~vfllGgkp~--V---~~~a~~~l~~ 130 (253)
T COG1922 56 PEFREILNQADLILPDGIGVVRAARRLLGQPLPERVAGTDLVEALLKRAAEEGKRVFLLGGKPG--V---AEQAAAKLRA 130 (253)
T ss_pred HHHHHHHhhcCEEccCchhHHHHHHHHhCccCcccCChHHHHHHHHHHhCccCceEEEecCCHH--H---HHHHHHHHHH
Confidence 45567788899999998852 1 11 1 36788888888888888777433211 0 1233455566
Q ss_pred hhccCcEEecCHHHHHHhhCCCCHHHHHHHHHHcCCCccEEEEEcCC
Q 017305 291 FLSTSDVLLLTSDEAESLTGLRNPITAGQELLRKGLRTKWVVVKMGP 337 (374)
Q Consensus 291 ll~~~Dil~~N~~Ea~~l~g~~~~~~~~~~l~~~g~~~~~vvvT~G~ 337 (374)
..+..+++-... -.+.....+.+++.+.+.++ ..++|-+|.
T Consensus 131 ~~p~l~ivg~h~----GYf~~~e~~~i~~~I~~s~p--dil~VgmG~ 171 (253)
T COG1922 131 KYPGLKIVGSHD----GYFDPEEEEAIVERIAASGP--DILLVGMGV 171 (253)
T ss_pred HCCCceEEEecC----CCCChhhHHHHHHHHHhcCC--CEEEEeCCC
Confidence 666666665542 11111111345666666665 667777775
No 192
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=25.15 E-value=1.2e+02 Score=24.20 Aligned_cols=40 Identities=23% Similarity=0.391 Sum_probs=34.2
Q ss_pred CCcHHHHHHHHHHcCCCeEEEEEecCchhHHHHHHHHHhcCCccc
Q 017305 128 AGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQDEGIGMV 172 (374)
Q Consensus 128 GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~~~L~~~GVd~~ 172 (374)
.|.+.-+|..|...|.++.+++.+|... .+.|++.||++-
T Consensus 51 ~g~G~~~a~~l~~~gvdvvi~~~iG~~a-----~~~l~~~GIkv~ 90 (121)
T COG1433 51 KGAGIRIAELLVDEGVDVVIASNIGPNA-----YNALKAAGIKVY 90 (121)
T ss_pred CcchHHHHHHHHHcCCCEEEECccCHHH-----HHHHHHcCcEEE
Confidence 5788889999999999999999999874 457899999863
No 193
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=25.14 E-value=5.3e+02 Score=24.51 Aligned_cols=97 Identities=13% Similarity=0.231 Sum_probs=51.5
Q ss_pred CCeEEEEEecCchhHHHHHHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccC-CCCCCchhhhhh
Q 017305 143 LDCVTIGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRA-DFSKEPAFSWMN 221 (374)
Q Consensus 143 ~~~~~v~~vG~D~~G~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~-~~~~~~~~~~~~ 221 (374)
.++.++|.-|. .|+.+++.|+++.....-+..-.. ....|++..-... ... -+ +
T Consensus 2 ~~VavvGATG~--VG~~~~~~L~e~~f~~~~~~~~AS-----------------~rSaG~~~~~f~~~~~~-v~-----~ 56 (334)
T COG0136 2 LNVAVLGATGA--VGQVLLELLEERHFPFEELVLLAS-----------------ARSAGKKYIEFGGKSIG-VP-----E 56 (334)
T ss_pred cEEEEEeccch--HHHHHHHHHHhcCCCcceEEEEec-----------------ccccCCccccccCcccc-Cc-----c
Confidence 45677777665 799999999997665543322111 1112332111000 000 00 0
Q ss_pred cccHHHHhhccCCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCC
Q 017305 222 KLSAEVKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPR 273 (374)
Q Consensus 222 ~l~~~~~~~l~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~ 273 (374)
.. .....+++.|+++++. ..+...++..++.+.|+ +++|-++.
T Consensus 57 ~~--~~~~~~~~~Divf~~a------g~~~s~~~~p~~~~~G~-~VIdnsSa 99 (334)
T COG0136 57 DA--ADEFVFSDVDIVFFAA------GGSVSKEVEPKAAEAGC-VVIDNSSA 99 (334)
T ss_pred cc--ccccccccCCEEEEeC------chHHHHHHHHHHHHcCC-EEEeCCcc
Confidence 00 1122345889998863 23556788888888996 55665543
No 194
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=24.87 E-value=1e+02 Score=27.98 Aligned_cols=85 Identities=9% Similarity=-0.020 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhc--cCcEEecCHHHHHH-----hhCCCCHHHHHHH
Q 017305 248 SPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLS--TSDVLLLTSDEAES-----LTGLRNPITAGQE 320 (374)
Q Consensus 248 ~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~--~~Dil~~N~~Ea~~-----l~g~~~~~~~~~~ 320 (374)
..+.+.+ ..+++++..++|...... ....+...+... .+.++-.-+.+... +.-..+.+++++.
T Consensus 54 ~~~~l~~---~l~~~~i~~vIDATHPfA------~~is~na~~a~~~~~ipylR~eRp~~~~~~~~~~~~v~~~~eA~~~ 124 (249)
T PF02571_consen 54 DEEGLAE---FLRENGIDAVIDATHPFA------AEISQNAIEACRELGIPYLRFERPSWQPEPDDNWHYVDSYEEAAEL 124 (249)
T ss_pred CHHHHHH---HHHhCCCcEEEECCCchH------HHHHHHHHHHHhhcCcceEEEEcCCcccCCCCeEEEeCCHHHHHHH
Confidence 4554544 456789999999987542 111122222221 23444443333321 2223478889988
Q ss_pred HHHcCCCccEEEEEcCCCceEEE
Q 017305 321 LLRKGLRTKWVVVKMGPRGSILV 343 (374)
Q Consensus 321 l~~~g~~~~~vvvT~G~~Ga~~~ 343 (374)
+.+.+. +.|++|.|.+..-.+
T Consensus 125 l~~~~~--~~iflttGsk~L~~f 145 (249)
T PF02571_consen 125 LKELGG--GRIFLTTGSKNLPPF 145 (249)
T ss_pred HhhcCC--CCEEEeCchhhHHHH
Confidence 877654 679999999876433
No 195
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=24.82 E-value=2.8e+02 Score=25.14 Aligned_cols=63 Identities=8% Similarity=0.105 Sum_probs=44.6
Q ss_pred hccCCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHH
Q 017305 230 AIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAE 306 (374)
Q Consensus 230 ~l~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~ 306 (374)
...++|++++.... ++.+.+.++++.+++.|..+.+|..... +.....-..+|++-.|.....
T Consensus 130 ~~~GAD~VlLi~~~---l~~~~l~~li~~a~~lGl~~lvevh~~~-----------E~~~A~~~gadiIgin~rdl~ 192 (260)
T PRK00278 130 RAAGADAILLIVAA---LDDEQLKELLDYAHSLGLDVLVEVHDEE-----------ELERALKLGAPLIGINNRNLK 192 (260)
T ss_pred HHcCCCEEEEEecc---CCHHHHHHHHHHHHHcCCeEEEEeCCHH-----------HHHHHHHcCCCEEEECCCCcc
Confidence 35689999988643 3457899999999999999999987431 111122237899998865543
No 196
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=24.74 E-value=5.1e+02 Score=23.21 Aligned_cols=42 Identities=17% Similarity=0.176 Sum_probs=32.5
Q ss_pred HHHHHHHHHcCCC-eEEEEEecCchhHHHHHHHHHhcCCcccce
Q 017305 132 CNVAIAAARLGLD-CVTIGHVGNEIYGRFLLDVLQDEGIGMVGM 174 (374)
Q Consensus 132 ~NvA~~larLG~~-~~~v~~vG~D~~G~~i~~~L~~~GVd~~~v 174 (374)
.-+..+|+.||.+ +.+++..-+| .-+.+++.|++.|+++..+
T Consensus 109 ~A~~~AL~alg~~RIalvTPY~~~-v~~~~~~~l~~~G~eV~~~ 151 (239)
T TIGR02990 109 SAAVDGLAALGVRRISLLTPYTPE-TSRPMAQYFAVRGFEIVNF 151 (239)
T ss_pred HHHHHHHHHcCCCEEEEECCCcHH-HHHHHHHHHHhCCcEEeee
Confidence 3455667889964 7888877665 7888999999999997654
No 197
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=24.67 E-value=1.3e+02 Score=29.77 Aligned_cols=46 Identities=11% Similarity=0.259 Sum_probs=35.0
Q ss_pred cCCc--HHHHHHHHHHcCCCeEEEEEec------CchhHHHHHHHHHhcCCccc
Q 017305 127 EAGG--NCNVAIAAARLGLDCVTIGHVG------NEIYGRFLLDVLQDEGIGMV 172 (374)
Q Consensus 127 ~GG~--a~NvA~~larLG~~~~~v~~vG------~D~~G~~i~~~L~~~GVd~~ 172 (374)
.||+ +.-+|..++++|.++.++-.-. +....+.+.+.|++.||++.
T Consensus 178 IGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~ 231 (466)
T PRK07818 178 AGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKIL 231 (466)
T ss_pred ECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCccCHHHHHHHHHHHHHCCCEEE
Confidence 4665 6678999999999999876421 22367888999999999864
No 198
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=24.47 E-value=4.5e+02 Score=22.83 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=11.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCe
Q 017305 245 DELSPALIISALEYAAQVGTS 265 (374)
Q Consensus 245 ~~~~~~~~~~~~~~a~~~g~~ 265 (374)
.++++++...-++-|+.+++.
T Consensus 74 tDiNp~A~~~Tl~TA~~n~~~ 94 (209)
T KOG3191|consen 74 TDINPEALEATLETARCNRVH 94 (209)
T ss_pred ecCCHHHHHHHHHHHHhcCCc
Confidence 455666665555555555443
No 199
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=24.44 E-value=4.4e+02 Score=22.36 Aligned_cols=57 Identities=18% Similarity=0.266 Sum_probs=36.1
Q ss_pred cCCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEc-CCCCCCCCCCCChHHHHHHHhhhccCcEEecC
Q 017305 232 KHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFD-PGPRGKSLSSGTPEEQRALSYFLSTSDVLLLT 301 (374)
Q Consensus 232 ~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D-~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N 301 (374)
.+++++.+-+. ...+...++++.++++|+++.++ +++.. + .+....+...+|++.++
T Consensus 76 aGad~i~~h~~----~~~~~~~~~i~~~~~~g~~~~v~~~~~~t-------~--~e~~~~~~~~~d~v~~~ 133 (202)
T cd04726 76 AGADIVTVLGA----APLSTIKKAVKAAKKYGKEVQVDLIGVED-------P--EKRAKLLKLGVDIVILH 133 (202)
T ss_pred cCCCEEEEEee----CCHHHHHHHHHHHHHcCCeEEEEEeCCCC-------H--HHHHHHHHCCCCEEEEc
Confidence 46888877532 23355778889999999999887 55432 1 12223223378998764
No 200
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=24.27 E-value=1.3e+02 Score=28.97 Aligned_cols=46 Identities=20% Similarity=0.273 Sum_probs=33.7
Q ss_pred cCCc--HHHHHHHHHHcCCCeEEEEEe-------cCchhHHHHHHHHHhcCCccc
Q 017305 127 EAGG--NCNVAIAAARLGLDCVTIGHV-------GNEIYGRFLLDVLQDEGIGMV 172 (374)
Q Consensus 127 ~GG~--a~NvA~~larLG~~~~~v~~v-------G~D~~G~~i~~~L~~~GVd~~ 172 (374)
.||+ +.-+|..|+++|.+++++..- .+....+.+++.+++.||.+.
T Consensus 150 iGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~ 204 (396)
T PRK09754 150 VGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRIL 204 (396)
T ss_pred ECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEE
Confidence 4555 667888999999999988641 122356778888899998853
No 201
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=23.96 E-value=2.9e+02 Score=27.42 Aligned_cols=63 Identities=13% Similarity=0.077 Sum_probs=39.4
Q ss_pred cCCcEEEEecCCCCCCCHHHHHHHHHHHHhc--CCeEEEcCCCCCCCCCCCChHHHHHHHhhhcc-CcEEecCHH
Q 017305 232 KHSKVLFCNGYGFDELSPALIISALEYAAQV--GTSIFFDPGPRGKSLSSGTPEEQRALSYFLST-SDVLLLTSD 303 (374)
Q Consensus 232 ~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~--g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~-~Dil~~N~~ 303 (374)
.+.+.|.++|++-.-..++...+.++.+++. ++.+.++.++.. + .+.+.++++. +|.+.++-+
T Consensus 77 ~~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i~i~lsTNG~~--l-------~e~i~~L~~~gvd~V~islk 142 (442)
T TIGR01290 77 PQLSVVGIAGPGDPLANIGKTFQTLELVARQLPDVKLCLSTNGLM--L-------PEHVDRLVDLGVGHVTITIN 142 (442)
T ss_pred CCCCEEEEecCCCcccCccccHHHHHHHHHhcCCCeEEEECCCCC--C-------HHHHHHHHHCCCCeEEEecc
Confidence 3567888888653333345555666666665 789999999863 2 2445566654 677655543
No 202
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=23.87 E-value=1.3e+02 Score=29.47 Aligned_cols=46 Identities=20% Similarity=0.147 Sum_probs=34.9
Q ss_pred cCCc--HHHHHHHHHHcCCCeEEEEEec------CchhHHHHHHHHHhcCCccc
Q 017305 127 EAGG--NCNVAIAAARLGLDCVTIGHVG------NEIYGRFLLDVLQDEGIGMV 172 (374)
Q Consensus 127 ~GG~--a~NvA~~larLG~~~~~v~~vG------~D~~G~~i~~~L~~~GVd~~ 172 (374)
.||+ +.-.|..++++|.+++++..-. +....+.+.+.|++.||++.
T Consensus 154 iGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~gI~i~ 207 (438)
T PRK13512 154 VGAGYISLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYR 207 (438)
T ss_pred ECCCHHHHHHHHHHHhCCCcEEEEecccccchhcCHHHHHHHHHHHHhcCCEEE
Confidence 4555 5678899999999999997521 22366788999999999864
No 203
>PTZ00300 pyruvate kinase; Provisional
Probab=23.76 E-value=3.6e+02 Score=26.87 Aligned_cols=80 Identities=10% Similarity=0.120 Sum_probs=51.9
Q ss_pred HHhhccCCcEEEEecCCC-CCCC----HHHHHHHHHHHHhcCCeEEEcCCCCCCCC---CCCChHHHHHHHhhhccCcEE
Q 017305 227 VKTAIKHSKVLFCNGYGF-DELS----PALIISALEYAAQVGTSIFFDPGPRGKSL---SSGTPEEQRALSYFLSTSDVL 298 (374)
Q Consensus 227 ~~~~l~~~~~v~~~g~~~-~~~~----~~~~~~~~~~a~~~g~~v~~D~~~~~~~~---~~~~~~~~~~~~~ll~~~Dil 298 (374)
+.+.++.+|.+++.-.-+ .+++ +...+++++.|+++|+++++-.+-...+. ...+.+.-+....++..+|.+
T Consensus 204 ldeI~~~~DgImVaRGDLgvei~~e~vp~~Qk~Ii~~~~~~gkpvI~ATQmLeSM~~~p~PTRAEvsDVanAv~dG~Dav 283 (454)
T PTZ00300 204 IDSIIEESDGIMVARGDLGVEIPAEKVVVAQKILISKCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCV 283 (454)
T ss_pred HHHHHHhCCEEEEecchhhhhcChHHHHHHHHHHHHHHHHcCCCEEEECchHHHHhhCCCCCchhHHHHHHHHHhCCcEE
Confidence 344567889998875433 1222 24567788899999999998665322111 112344556667788999999
Q ss_pred ecCHHHHH
Q 017305 299 LLTSDEAE 306 (374)
Q Consensus 299 ~~N~~Ea~ 306 (374)
.++.+-+.
T Consensus 284 MLS~ETA~ 291 (454)
T PTZ00300 284 MLSGETAK 291 (454)
T ss_pred EEechhcC
Confidence 99876654
No 204
>PRK06247 pyruvate kinase; Provisional
Probab=23.73 E-value=4.8e+02 Score=26.19 Aligned_cols=77 Identities=13% Similarity=0.209 Sum_probs=49.7
Q ss_pred hhccCCcEEEEecCCC-CCCC----HHHHHHHHHHHHhcCCeEEEcCCCCCCCC---CCCChHHHHHHHhhhccCcEEec
Q 017305 229 TAIKHSKVLFCNGYGF-DELS----PALIISALEYAAQVGTSIFFDPGPRGKSL---SSGTPEEQRALSYFLSTSDVLLL 300 (374)
Q Consensus 229 ~~l~~~~~v~~~g~~~-~~~~----~~~~~~~~~~a~~~g~~v~~D~~~~~~~~---~~~~~~~~~~~~~ll~~~Dil~~ 300 (374)
+.+..+|.+++.-.-+ .+++ +....++++.|+++|+++++-.+-...+. ...+.+.-+.....+..+|.+.+
T Consensus 229 eI~~~~DgImVaRGDLgve~g~~~v~~~qk~ii~~~~~~gkpvI~ATQmLeSM~~np~PTRAEvtDVaNAV~dG~DavML 308 (476)
T PRK06247 229 AIVEASDAIMVARGDLGVEVPLEQVPLIQKRIIRAARRAGKPVVVATQMLESMIENPVPTRAEVSDVATAVLDGADAVML 308 (476)
T ss_pred HHHHHcCEEEEccchhccccCHHHHHHHHHHHHHHHHHhCCCEEEECchHHHhhcCCCCCcchhHHHHHHHHhCCcEEEE
Confidence 3445588888865433 2344 35667888999999999988665322111 11233445566778889999999
Q ss_pred CHHHH
Q 017305 301 TSDEA 305 (374)
Q Consensus 301 N~~Ea 305 (374)
|.+-+
T Consensus 309 S~ETA 313 (476)
T PRK06247 309 SAETA 313 (476)
T ss_pred cchhc
Confidence 96554
No 205
>TIGR03853 matur_matur probable metal-binding protein. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.
Probab=23.50 E-value=1.7e+02 Score=21.20 Aligned_cols=38 Identities=18% Similarity=0.134 Sum_probs=32.9
Q ss_pred HHHHHHHHHcCCCeEEEEEecCchhHHHHHHHHHhcCC
Q 017305 132 CNVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQDEGI 169 (374)
Q Consensus 132 ~NvA~~larLG~~~~~v~~vG~D~~G~~i~~~L~~~GV 169 (374)
.=.+...+++|.++.|-++=.+|-..+.+++.|.+.|=
T Consensus 22 ~L~~~i~~~FG~~arFhTCSa~~m~a~~Li~FL~~kgK 59 (77)
T TIGR03853 22 SLKAAIEQKFGEDARFHTCSAEGMTADELLQFLLKKGK 59 (77)
T ss_pred HHHHHHHHHhCCCceEeecccccCCHHHHHHHHHHCCC
Confidence 44566778999999999999999999999999998764
No 206
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=23.33 E-value=3e+02 Score=23.31 Aligned_cols=18 Identities=22% Similarity=0.584 Sum_probs=15.1
Q ss_pred chhHHHHHHHHHhcCCcc
Q 017305 154 EIYGRFLLDVLQDEGIGM 171 (374)
Q Consensus 154 D~~G~~i~~~L~~~GVd~ 171 (374)
|..|..+.++|++.|..+
T Consensus 26 D~sG~~l~~~L~~ag~~~ 43 (169)
T COG0521 26 DKSGPLLVELLEEAGHNV 43 (169)
T ss_pred ccchhHHHHHHHHcCCcc
Confidence 668999999999988776
No 207
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=22.94 E-value=2.3e+02 Score=27.14 Aligned_cols=41 Identities=10% Similarity=0.068 Sum_probs=27.8
Q ss_pred cCCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCC
Q 017305 232 KHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGP 272 (374)
Q Consensus 232 ~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~ 272 (374)
.+.++|++............+.++.+.|+++|+.+++|-..
T Consensus 135 ~~TklV~lesP~NPtg~~~di~~I~~la~~~gi~vvvD~t~ 175 (364)
T PRK07269 135 EDTDIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNTF 175 (364)
T ss_pred cCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCC
Confidence 35678877644322222235677888899999999999874
No 208
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=22.71 E-value=3.6e+02 Score=24.26 Aligned_cols=71 Identities=23% Similarity=0.271 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCCCCHHHHHHHHHHcC
Q 017305 246 ELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRNPITAGQELLRKG 325 (374)
Q Consensus 246 ~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~~~~~~~~~~l~~~g 325 (374)
+++.+...++.+++++.|+..+..|-. .+.-+.+.++ .++.+++---|+..+ ..++.+.+.|
T Consensus 52 el~~e~~~~L~~~~~~~gi~f~stpfd---------~~s~d~l~~~--~~~~~KIaS~dl~n~-------~lL~~~A~tg 113 (241)
T PF03102_consen 52 ELSEEQHKELFEYCKELGIDFFSTPFD---------EESVDFLEEL--GVPAYKIASGDLTNL-------PLLEYIAKTG 113 (241)
T ss_dssp SS-HHHHHHHHHHHHHTT-EEEEEE-S---------HHHHHHHHHH--T-SEEEE-GGGTT-H-------HHHHHHHTT-
T ss_pred cCCHHHHHHHHHHHHHcCCEEEECCCC---------HHHHHHHHHc--CCCEEEeccccccCH-------HHHHHHHHhC
Confidence 466788999999999999877666532 2222333222 477887765554322 2444444444
Q ss_pred CCccEEEEEcCC
Q 017305 326 LRTKWVVVKMGP 337 (374)
Q Consensus 326 ~~~~~vvvT~G~ 337 (374)
+-+|+..|.
T Consensus 114 ---kPvIlSTG~ 122 (241)
T PF03102_consen 114 ---KPVILSTGM 122 (241)
T ss_dssp ---S-EEEE-TT
T ss_pred ---CcEEEECCC
Confidence 335555443
No 209
>PTZ00058 glutathione reductase; Provisional
Probab=22.60 E-value=1.1e+02 Score=31.43 Aligned_cols=51 Identities=16% Similarity=0.159 Sum_probs=0.0
Q ss_pred CCcCCCCCCcchhhhcccCCCCccEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHH
Q 017305 60 APSNSQNGTAHDWKLRSSGVKSIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAA 139 (374)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~la 139 (374)
++.+.....+.......+....+||+|||. |-+|.+.|..++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~yDvvVIG~--------------------------------------G~aG~~aA~~aa 68 (561)
T PTZ00058 27 SFYHNLEASSAPTHLKKKPRMVYDLIVIGG--------------------------------------GSGGMAAARRAA 68 (561)
T ss_pred chhhhhcccCcccccccCCCccccEEEECc--------------------------------------CHHHHHHHHHHH
Q ss_pred HcCCCeEEE
Q 017305 140 RLGLDCVTI 148 (374)
Q Consensus 140 rLG~~~~~v 148 (374)
++|.+|.+|
T Consensus 69 ~~G~~ValI 77 (561)
T PTZ00058 69 RNKAKVALV 77 (561)
T ss_pred HcCCeEEEE
No 210
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=22.57 E-value=2.6e+02 Score=27.57 Aligned_cols=103 Identities=14% Similarity=0.219 Sum_probs=57.2
Q ss_pred EEEEEecCchhHHHHHHHHHhcCCcccceee--CCCCCcccCCCccceeEEEEECCCC-----CccccccC--CCCCCch
Q 017305 146 VTIGHVGNEIYGRFLLDVLQDEGIGMVGMSE--DTDGVDTSSASYETLLCWVLVDPSQ-----RHGFCSRA--DFSKEPA 216 (374)
Q Consensus 146 ~~v~~vG~D~~G~~i~~~L~~~GVd~~~v~~--~~~~~~~~~~~~~T~~~~i~~~~~g-----~r~~~~~~--~~~~~~~ 216 (374)
.|||.|-....-+.|++++++.+=.+..|++ .++.. ++ .-|+|++.+...- +|.+.... -....+.
T Consensus 167 LFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk--~K---NRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~t 241 (506)
T KOG0117|consen 167 LFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDK--TK---NRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAIT 241 (506)
T ss_pred eEeccCCccccHHHHHHHHHhhCCCeeEEEEecCcccc--cc---ccceEEEEeecchhHHHHHhhccCCceeecCCcce
Confidence 5899999998999999999985433333333 22221 11 2478888765321 11121100 0011233
Q ss_pred hhhhhcccHHHHhhccCCcEEEEecCCCCCCCHHHHHHHHHH
Q 017305 217 FSWMNKLSAEVKTAIKHSKVLFCNGYGFDELSPALIISALEY 258 (374)
Q Consensus 217 ~~~~~~l~~~~~~~l~~~~~v~~~g~~~~~~~~~~~~~~~~~ 258 (374)
.+|.+...+-..+.+.+.+++|+ .++..++..+.++.
T Consensus 242 VdWAep~~e~ded~ms~VKvLYV-----RNL~~~tTeE~lk~ 278 (506)
T KOG0117|consen 242 VDWAEPEEEPDEDTMSKVKVLYV-----RNLMESTTEETLKK 278 (506)
T ss_pred eeccCcccCCChhhhhheeeeee-----eccchhhhHHHHHH
Confidence 34544433334557888899998 46666655555553
No 211
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=22.57 E-value=2.8e+02 Score=25.32 Aligned_cols=77 Identities=10% Similarity=0.077 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHH------hhCC----------
Q 017305 248 SPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAES------LTGL---------- 311 (374)
Q Consensus 248 ~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~------l~g~---------- 311 (374)
..+.+..+.+.+++.|.+++-++-... .++.+...+|++++-..+... +.+.
T Consensus 76 g~~gl~~l~~~~~~~Gl~~~te~~d~~------------~~~~l~~~vd~~kIga~~~~n~~LL~~~a~~gkPV~lk~G~ 143 (266)
T PRK13398 76 GEEGLKILKEVGDKYNLPVVTEVMDTR------------DVEEVADYADMLQIGSRNMQNFELLKEVGKTKKPILLKRGM 143 (266)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeeCChh------------hHHHHHHhCCEEEECcccccCHHHHHHHhcCCCcEEEeCCC
Confidence 356677777788888998887764321 123334457888776554432 2211
Q ss_pred C----CHHHHHHHHHHcCCCccEEEEEcCC
Q 017305 312 R----NPITAGQELLRKGLRTKWVVVKMGP 337 (374)
Q Consensus 312 ~----~~~~~~~~l~~~g~~~~~vvvT~G~ 337 (374)
. +...+++.+...|-. +.+++-+|-
T Consensus 144 ~~s~~e~~~A~e~i~~~Gn~-~i~L~~rG~ 172 (266)
T PRK13398 144 SATLEEWLYAAEYIMSEGNE-NVVLCERGI 172 (266)
T ss_pred CCCHHHHHHHHHHHHhcCCC-eEEEEECCC
Confidence 1 234566677766642 455555654
No 212
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=22.55 E-value=1.2e+02 Score=30.14 Aligned_cols=20 Identities=35% Similarity=0.514 Sum_probs=17.1
Q ss_pred HHHHHHHHHHcCCCeEEEEE
Q 017305 131 NCNVAIAAARLGLDCVTIGH 150 (374)
Q Consensus 131 a~NvA~~larLG~~~~~v~~ 150 (374)
+...|..++++|.+|.++-.
T Consensus 16 G~~aA~~aa~~G~~V~lie~ 35 (471)
T PRK06467 16 GYSAAFRAADLGLETVCVER 35 (471)
T ss_pred HHHHHHHHHHCCCcEEEEec
Confidence 67888999999999988873
No 213
>PRK06739 pyruvate kinase; Validated
Probab=22.53 E-value=6.9e+02 Score=23.95 Aligned_cols=80 Identities=11% Similarity=0.101 Sum_probs=51.4
Q ss_pred HHhhccCCcEEEEecCCC-CCCCH----HHHHHHHHHHHhcCCeEEEcCCCCCCCC---CCCChHHHHHHHhhhccCcEE
Q 017305 227 VKTAIKHSKVLFCNGYGF-DELSP----ALIISALEYAAQVGTSIFFDPGPRGKSL---SSGTPEEQRALSYFLSTSDVL 298 (374)
Q Consensus 227 ~~~~l~~~~~v~~~g~~~-~~~~~----~~~~~~~~~a~~~g~~v~~D~~~~~~~~---~~~~~~~~~~~~~ll~~~Dil 298 (374)
+.+.++.+|.+.+.---+ -+.+. ..-+++++.|++.|++|++-.+-...+. ...+.+.-+.....+..+|.+
T Consensus 223 l~eI~~~sDgimVARGDLgve~~~e~vp~~Qk~Ii~~c~~~gkPvIvATqmLeSM~~~p~PTRAEvsDVanaV~dG~D~v 302 (352)
T PRK06739 223 FQDICKEADGIMIARGDLGVELPYQFIPLLQKMMIQECNRTNTYVITATQMLQSMVDHSIPTRAEVTDVFQAVLDGTNAV 302 (352)
T ss_pred HHHHHHhcCEEEEECcccccccCHHHHHHHHHHHHHHHHHhCCCEEEEcchHHhhccCCCCChHHHHHHHHHHHhCCcEE
Confidence 445567788887653222 34443 3456788899999999998765322111 112344556667788999999
Q ss_pred ecCHHHHH
Q 017305 299 LLTSDEAE 306 (374)
Q Consensus 299 ~~N~~Ea~ 306 (374)
.++.+-+.
T Consensus 303 MLS~ETA~ 310 (352)
T PRK06739 303 MLSAESAS 310 (352)
T ss_pred EEcccccC
Confidence 99976653
No 214
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=22.52 E-value=2.1e+02 Score=30.02 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=16.2
Q ss_pred HHHHHHHHHHcCCCeEEEEE
Q 017305 131 NCNVAIAAARLGLDCVTIGH 150 (374)
Q Consensus 131 a~NvA~~larLG~~~~~v~~ 150 (374)
+.-.|.+|++.|.++.++=+
T Consensus 93 GLalAlaL~r~Gi~V~V~Er 112 (668)
T PLN02927 93 GLVFALAAKKKGFDVLVFEK 112 (668)
T ss_pred HHHHHHHHHhcCCeEEEEec
Confidence 56788889999998888754
No 215
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=22.46 E-value=1.2e+02 Score=30.05 Aligned_cols=19 Identities=37% Similarity=0.473 Sum_probs=16.8
Q ss_pred HHHHHHHHHHcCCCeEEEE
Q 017305 131 NCNVAIAAARLGLDCVTIG 149 (374)
Q Consensus 131 a~NvA~~larLG~~~~~v~ 149 (374)
+...|..++++|.+|.++-
T Consensus 16 G~~AA~~aa~~G~~V~lie 34 (466)
T PRK07818 16 GYVAAIRAAQLGLKTAVVE 34 (466)
T ss_pred HHHHHHHHHhCCCeEEEEe
Confidence 6788999999999998885
No 216
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=22.43 E-value=2.9e+02 Score=24.36 Aligned_cols=43 Identities=16% Similarity=0.192 Sum_probs=26.7
Q ss_pred CCcHHHHHHHHHHcCCCeEEEEEecCchhHHHHHHHHHhcCCccc
Q 017305 128 AGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQDEGIGMV 172 (374)
Q Consensus 128 GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~~~L~~~GVd~~ 172 (374)
||-+.++|..++..|.++.++++ +....+.+.+.+++.|....
T Consensus 20 g~iG~~ia~~l~~~G~~V~~~~r--~~~~~~~~~~~i~~~~~~~~ 62 (255)
T PRK07523 20 QGIGYALAEGLAQAGAEVILNGR--DPAKLAAAAESLKGQGLSAH 62 (255)
T ss_pred chHHHHHHHHHHHcCCEEEEEeC--CHHHHHHHHHHHHhcCceEE
Confidence 45578999999999998776543 11223445556665554443
No 217
>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=22.33 E-value=4.3e+02 Score=27.73 Aligned_cols=89 Identities=21% Similarity=0.264 Sum_probs=44.8
Q ss_pred ccCCcEEEEecCCCCCCCHHHHHHHHHHHHhc-C-CeEEEcCCCCCCC--------CCCCChHHHHHHHhhhccCcEEec
Q 017305 231 IKHSKVLFCNGYGFDELSPALIISALEYAAQV-G-TSIFFDPGPRGKS--------LSSGTPEEQRALSYFLSTSDVLLL 300 (374)
Q Consensus 231 l~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~-g-~~v~~D~~~~~~~--------~~~~~~~~~~~~~~ll~~~Dil~~ 300 (374)
++++|++++-|....+-.+-.... +..|++. | ..|++||...... +..+.+ ...+..++.++ +..
T Consensus 167 i~nAd~Ili~GsNpae~hPv~~~~-i~~Ak~~~GaklIvVDPR~t~Ta~~AD~~l~irPGTD--~All~gmi~~i--i~y 241 (649)
T cd02752 167 IKNADVILVMGGNPAEAHPVSFKW-ILEAKEKNGAKLIVVDPRFTRTAAKADLYVPIRSGTD--IAFLGGMINYI--IRY 241 (649)
T ss_pred HhcCCEEEEECCChHHhCcHHHHH-HHHHHHcCCCeEEEEcCCCCchhHhcCEeeCcCCChH--HHHHHHHHHHH--HhC
Confidence 577999988876432222223333 3445554 6 5588998753210 111111 11122222211 123
Q ss_pred CHHHHHHhhCCC--CHHHHHHHHHHc
Q 017305 301 TSDEAESLTGLR--NPITAGQELLRK 324 (374)
Q Consensus 301 N~~Ea~~l~g~~--~~~~~~~~l~~~ 324 (374)
+.++++.++|.. +..++++.+.+.
T Consensus 242 tpe~v~~itGvp~e~I~~~A~~~a~a 267 (649)
T cd02752 242 TPEEVEDICGVPKEDFLKVAEMFAAT 267 (649)
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHhc
Confidence 566777888864 346677777664
No 218
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=22.32 E-value=2.9e+02 Score=24.49 Aligned_cols=39 Identities=23% Similarity=0.322 Sum_probs=31.5
Q ss_pred ccCCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCC
Q 017305 231 IKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRG 274 (374)
Q Consensus 231 l~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~ 274 (374)
+.++|+++.- ...++...++.+.+++.|...++=+.+..
T Consensus 49 i~~~Dl~I~y-----~lHPDl~~~l~~~~~e~g~kavIvp~~~~ 87 (217)
T PF02593_consen 49 IPEADLLIAY-----GLHPDLTYELPEIAKEAGVKAVIVPSESP 87 (217)
T ss_pred CCCCCEEEEe-----ccCchhHHHHHHHHHHcCCCEEEEecCCC
Confidence 8899999874 45578889999999999988887777654
No 219
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=22.31 E-value=5.4e+02 Score=22.61 Aligned_cols=37 Identities=8% Similarity=-0.024 Sum_probs=23.6
Q ss_pred HHhhccCCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEE
Q 017305 227 VKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFF 268 (374)
Q Consensus 227 ~~~~l~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~ 268 (374)
..+.+.++|+|+.+. .+.+.-..+-+.+++.+++++.
T Consensus 105 ~~~~~~~~DvVi~~~-----d~~~~r~~l~~~~~~~~ip~i~ 141 (228)
T cd00757 105 AEELIAGYDLVLDCT-----DNFATRYLINDACVKLGKPLVS 141 (228)
T ss_pred HHHHHhCCCEEEEcC-----CCHHHHHHHHHHHHHcCCCEEE
Confidence 345577899988762 2345555566777888776543
No 220
>PRK14727 putative mercuric reductase; Provisional
Probab=22.26 E-value=1.5e+02 Score=29.62 Aligned_cols=45 Identities=24% Similarity=0.410 Sum_probs=34.5
Q ss_pred cCCc--HHHHHHHHHHcCCCeEEEEEec------CchhHHHHHHHHHhcCCccc
Q 017305 127 EAGG--NCNVAIAAARLGLDCVTIGHVG------NEIYGRFLLDVLQDEGIGMV 172 (374)
Q Consensus 127 ~GG~--a~NvA~~larLG~~~~~v~~vG------~D~~G~~i~~~L~~~GVd~~ 172 (374)
.||+ +.=+|..++++|.++.++.. . +...++.+.+.|++.||.+.
T Consensus 194 IGgG~iG~E~A~~l~~~G~~Vtlv~~-~~~l~~~d~~~~~~l~~~L~~~GV~i~ 246 (479)
T PRK14727 194 IGSSVVAAEIAQAYARLGSRVTILAR-STLLFREDPLLGETLTACFEKEGIEVL 246 (479)
T ss_pred ECCCHHHHHHHHHHHHcCCEEEEEEc-CCCCCcchHHHHHHHHHHHHhCCCEEE
Confidence 4555 56778889999999999975 2 22367888899999999864
No 221
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=22.13 E-value=1.2e+02 Score=24.94 Aligned_cols=44 Identities=18% Similarity=0.256 Sum_probs=29.9
Q ss_pred HHhhccCCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCC
Q 017305 227 VKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPR 273 (374)
Q Consensus 227 ~~~~l~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~ 273 (374)
..+.+.++|+++++|..+-+- .+.++++.+++....+++-|+..
T Consensus 56 ~~~~l~~aD~viiTGsTlvN~---Ti~~iL~~~~~~~~vil~GpS~~ 99 (147)
T PF04016_consen 56 AEEILPWADVVIITGSTLVNG---TIDDILELARNAREVILYGPSAP 99 (147)
T ss_dssp HHHHGGG-SEEEEECHHCCTT---THHHHHHHTTTSSEEEEESCCGG
T ss_pred HHHHHccCCEEEEEeeeeecC---CHHHHHHhCccCCeEEEEecCch
Confidence 355688999999999876554 45667777775555566777643
No 222
>PF01172 SBDS: Shwachman-Bodian-Diamond syndrome (SBDS) protein ; InterPro: IPR019783 This entry represents the N-terminal domain of proteins that are highly conserved in species ranging from archaea to vertebrates and plants []. The family contains several Shwachman-Bodian-Diamond syndrome (SBDS, OMIM 260400) proteins from both mouse and humans. Shwachman-Diamond syndrome is an autosomal recessive disorder with clinical features that include pancreatic exocrine insufficiency, haematological dysfunction and skeletal abnormalities. It is characterised by bone marrow failure and leukemia predisposition. Members of this family play a role in RNA metabolism [, ]. In yeast Sdo1 is involved in the biogenesis of the 60S ribosomal subunit and translational activation of ribosomes. Together with the EF-2-like GTPase RIA1 (EfI1), it triggers the GTP-dependent release of TIF6 from 60S pre-ribosomes in the cytoplasm, thereby activating ribosomes for translation competence by allowing 80S ribosome assembly and facilitating TIF6 recycling to the nucleus, where it is required for 60S rRNA processing and nuclear export. This data links defective late 60S subunit maturation to an inherited bone marrow failure syndrome associated with leukemia predisposition []. A number of uncharacterised hydrophilic proteins of about 30 kDa share regions of similarity. These include, Mouse protein 22A3. Saccharomyces cerevisiae chromosome XII hypothetical protein YLR022c. Caenorhabditis elegans hypothetical protein W06E11.4. Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ0592. ; PDB: 1NYN_A 2WBM_B 1P9Q_C 1T95_A 2KDO_A 2L9N_A.
Probab=22.10 E-value=1.1e+02 Score=23.00 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=22.5
Q ss_pred cCHHHHHHhhCCCCHHHHHHHHHHcC
Q 017305 300 LTSDEAESLTGLRNPITAGQELLRKG 325 (374)
Q Consensus 300 ~N~~Ea~~l~g~~~~~~~~~~l~~~g 325 (374)
++..++...||..+..++++.+++.|
T Consensus 54 As~~~L~~~FGT~d~~~ii~~IL~~G 79 (91)
T PF01172_consen 54 ASKEDLENAFGTTDVDEIIKKILKKG 79 (91)
T ss_dssp E-HHHHHHHHSSS-HHHHHHHHHHHS
T ss_pred CCHHHHHHHhCCCCHHHHHHHHHhcC
Confidence 78999999999999999999999987
No 223
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=22.08 E-value=4.2e+02 Score=25.33 Aligned_cols=37 Identities=14% Similarity=0.154 Sum_probs=26.7
Q ss_pred ccCCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCC
Q 017305 231 IKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRG 274 (374)
Q Consensus 231 l~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~ 274 (374)
+.+.|+++++ .+.+...++...+.+.|+ +++|.++..
T Consensus 66 ~~~~Divf~a------~~~~~s~~~~~~~~~~G~-~VID~Ss~f 102 (347)
T PRK06728 66 FEGVDIAFFS------AGGEVSRQFVNQAVSSGA-IVIDNTSEY 102 (347)
T ss_pred hcCCCEEEEC------CChHHHHHHHHHHHHCCC-EEEECchhh
Confidence 4678999886 245677777777777775 678887654
No 224
>TIGR03586 PseI pseudaminic acid synthase.
Probab=22.00 E-value=3e+02 Score=26.04 Aligned_cols=25 Identities=24% Similarity=0.206 Sum_probs=19.3
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEcCC
Q 017305 247 LSPALIISALEYAAQVGTSIFFDPG 271 (374)
Q Consensus 247 ~~~~~~~~~~~~a~~~g~~v~~D~~ 271 (374)
++.+...++.+++++.|+.++-.+-
T Consensus 74 l~~e~~~~L~~~~~~~Gi~~~stpf 98 (327)
T TIGR03586 74 TPWEWHKELFERAKELGLTIFSSPF 98 (327)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEccC
Confidence 4567778888899999988776653
No 225
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=21.93 E-value=1.7e+02 Score=29.25 Aligned_cols=47 Identities=15% Similarity=0.191 Sum_probs=35.3
Q ss_pred ccCCc--HHHHHHHHHHcCCCeEEEEEe----c-CchhHHHHHHHHHhcCCccc
Q 017305 126 WEAGG--NCNVAIAAARLGLDCVTIGHV----G-NEIYGRFLLDVLQDEGIGMV 172 (374)
Q Consensus 126 ~~GG~--a~NvA~~larLG~~~~~v~~v----G-~D~~G~~i~~~L~~~GVd~~ 172 (374)
..||+ +.=.|..++++|.+++++..- + +....+.+++.|++.||++.
T Consensus 185 IIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~~~d~~~~~~l~~~L~~~gV~i~ 238 (484)
T TIGR01438 185 VVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDCANKVGEHMEEHGVKFK 238 (484)
T ss_pred EECCCHHHHHHHHHHHHhCCcEEEEEecccccccCHHHHHHHHHHHHHcCCEEE
Confidence 34666 567889999999999999751 1 12357888899999999864
No 226
>PRK07109 short chain dehydrogenase; Provisional
Probab=21.93 E-value=2.8e+02 Score=26.04 Aligned_cols=46 Identities=24% Similarity=0.144 Sum_probs=30.6
Q ss_pred CCcHHHHHHHHHHcCCCeEEEEEecCchhHHHHHHHHHhcCCccccee
Q 017305 128 AGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQDEGIGMVGMS 175 (374)
Q Consensus 128 GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~~~L~~~GVd~~~v~ 175 (374)
||-+..+|..+++.|.++.+++. ++...+.+.+.+++.|.+...+.
T Consensus 18 ~gIG~~la~~la~~G~~Vvl~~R--~~~~l~~~~~~l~~~g~~~~~v~ 63 (334)
T PRK07109 18 AGVGRATARAFARRGAKVVLLAR--GEEGLEALAAEIRAAGGEALAVV 63 (334)
T ss_pred CHHHHHHHHHHHHCCCEEEEEEC--CHHHHHHHHHHHHHcCCcEEEEE
Confidence 45578889999999998877654 23344556667776666554443
No 227
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=21.79 E-value=5.5e+02 Score=22.48 Aligned_cols=97 Identities=13% Similarity=0.196 Sum_probs=51.5
Q ss_pred HHHHhhccCCcEEEEecCCCCCC---CHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhc--cCcEEe
Q 017305 225 AEVKTAIKHSKVLFCNGYGFDEL---SPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLS--TSDVLL 299 (374)
Q Consensus 225 ~~~~~~l~~~~~v~~~g~~~~~~---~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~--~~Dil~ 299 (374)
+++.+.++.+|++++++...-.. ..+.+..+++..++.|.++++-....+..+..-.++.. .++.. .+.+-.
T Consensus 89 ~~~~~~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~---SRl~~Gl~~~l~~ 165 (219)
T PF00308_consen 89 EEFKDRLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLR---SRLSWGLVVELQP 165 (219)
T ss_dssp HHHHHHHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHH---HHHHCSEEEEE--
T ss_pred hhhhhhhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhh---hhHhhcchhhcCC
Confidence 34556688999999998754211 13567778888888998888766554433432222222 22222 245556
Q ss_pred cCHHHHHHhh-------CCCCHHHHHHHHHHc
Q 017305 300 LTSDEAESLT-------GLRNPITAGQELLRK 324 (374)
Q Consensus 300 ~N~~Ea~~l~-------g~~~~~~~~~~l~~~ 324 (374)
++.++...+. |..=+++++..|.++
T Consensus 166 pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~ 197 (219)
T PF00308_consen 166 PDDEDRRRILQKKAKERGIELPEEVIEYLARR 197 (219)
T ss_dssp --HHHHHHHHHHHHHHTT--S-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHh
Confidence 6666655443 222345555555554
No 228
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=21.50 E-value=1.7e+02 Score=28.86 Aligned_cols=46 Identities=15% Similarity=0.208 Sum_probs=34.7
Q ss_pred cCCc--HHHHHHHHHHcCCCeEEEEEec------CchhHHHHHHHHHhcCCccc
Q 017305 127 EAGG--NCNVAIAAARLGLDCVTIGHVG------NEIYGRFLLDVLQDEGIGMV 172 (374)
Q Consensus 127 ~GG~--a~NvA~~larLG~~~~~v~~vG------~D~~G~~i~~~L~~~GVd~~ 172 (374)
.||+ +.-.|..++++|.+|+++..-. +....+.+.+.|++.||++.
T Consensus 172 IGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~gI~i~ 225 (450)
T TIGR01421 172 VGAGYIAVELAGVLHGLGSETHLVIRHERVLRSFDSMISETITEEYEKEGINVH 225 (450)
T ss_pred ECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcccCHHHHHHHHHHHHHcCCEEE
Confidence 4655 6678999999999999987532 12356778889999999864
No 229
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=21.46 E-value=5.9e+02 Score=24.17 Aligned_cols=38 Identities=16% Similarity=0.128 Sum_probs=24.0
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcC
Q 017305 233 HSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDP 270 (374)
Q Consensus 233 ~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~ 270 (374)
+.++|+++.........+.+.++.+.|+++|+.+++|.
T Consensus 159 ~t~~viv~~~~~~G~~~~~l~~i~~la~~~g~~livD~ 196 (398)
T cd00613 159 EVAALMVQYPNTLGVFEDLIKEIADIAHSAGALVYVDG 196 (398)
T ss_pred CeEEEEEECCCCCceecchHHHHHHHHHhcCCEEEEEe
Confidence 34556665432222223456788888888898888885
No 230
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=21.34 E-value=1.3e+02 Score=28.80 Aligned_cols=24 Identities=25% Similarity=0.345 Sum_probs=18.9
Q ss_pred CCc--HHHHHHHHHHcCCCeEEEEEe
Q 017305 128 AGG--NCNVAIAAARLGLDCVTIGHV 151 (374)
Q Consensus 128 GG~--a~NvA~~larLG~~~~~v~~v 151 (374)
||+ |.-.|++|++.|.++.++=.-
T Consensus 10 GgG~aGl~~A~~L~~~G~~v~l~E~~ 35 (384)
T PRK08849 10 GGGMVGAATALGFAKQGRSVAVIEGG 35 (384)
T ss_pred CcCHHHHHHHHHHHhCCCcEEEEcCC
Confidence 544 567888899999999988853
No 231
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=21.20 E-value=3.1e+02 Score=24.49 Aligned_cols=55 Identities=9% Similarity=0.178 Sum_probs=33.6
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEec
Q 017305 233 HSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLL 300 (374)
Q Consensus 233 ~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~ 300 (374)
++|++.+- .+.......++++..|+.|++.-+-.++... .+.+..+++.+|.+.+
T Consensus 82 Gad~it~H----~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~---------~~~l~~~l~~vD~VLv 136 (229)
T PRK09722 82 GADFITLH----PETINGQAFRLIDEIRRAGMKVGLVLNPETP---------VESIKYYIHLLDKITV 136 (229)
T ss_pred CCCEEEEC----ccCCcchHHHHHHHHHHcCCCEEEEeCCCCC---------HHHHHHHHHhcCEEEE
Confidence 67877664 2322223567888889999875444443321 2456778888887654
No 232
>PLN02509 cystathionine beta-lyase
Probab=21.14 E-value=3.8e+02 Score=26.71 Aligned_cols=47 Identities=19% Similarity=0.147 Sum_probs=32.1
Q ss_pred HHhhcc-CCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCC
Q 017305 227 VKTAIK-HSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPR 273 (374)
Q Consensus 227 ~~~~l~-~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~ 273 (374)
+.+.+. +.++|++............+.++.+.|+++|+.+++|-...
T Consensus 210 l~~ai~~~TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~a 257 (464)
T PLN02509 210 VAAAIGPQTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIM 257 (464)
T ss_pred HHHhCCcCCeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECCcc
Confidence 334443 46788877543323334567888999999999999998743
No 233
>PRK09126 hypothetical protein; Provisional
Probab=21.11 E-value=1.3e+02 Score=28.87 Aligned_cols=42 Identities=24% Similarity=0.226 Sum_probs=27.0
Q ss_pred CCc--HHHHHHHHHHcCCCeEEEEEecC------chhH------HHHHHHHHhcCC
Q 017305 128 AGG--NCNVAIAAARLGLDCVTIGHVGN------EIYG------RFLLDVLQDEGI 169 (374)
Q Consensus 128 GG~--a~NvA~~larLG~~~~~v~~vG~------D~~G------~~i~~~L~~~GV 169 (374)
||+ +...|.+|++.|.+|.++=+--. ...| ..-.+.|++.|+
T Consensus 10 GgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl 65 (392)
T PRK09126 10 GAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGA 65 (392)
T ss_pred CcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCC
Confidence 444 56788999999999988854221 0112 334567777776
No 234
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=21.04 E-value=2.7e+02 Score=20.38 Aligned_cols=34 Identities=6% Similarity=0.060 Sum_probs=26.7
Q ss_pred cCCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEc
Q 017305 232 KHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFD 269 (374)
Q Consensus 232 ~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D 269 (374)
.++.+|++. .+.+++....+...++.+++++.+.
T Consensus 23 gkakLViiA----~Da~~~~~k~i~~~c~~~~Vpv~~~ 56 (82)
T PRK13601 23 CNVLQVYIA----KDAEEHVTKKIKELCEEKSIKIVYI 56 (82)
T ss_pred CCeeEEEEe----CCCCHHHHHHHHHHHHhCCCCEEEe
Confidence 357788887 6777888888888999999888544
No 235
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=21.02 E-value=1.2e+02 Score=29.06 Aligned_cols=20 Identities=35% Similarity=0.509 Sum_probs=17.6
Q ss_pred HHHHHHHHHHc---CCCeEEEEE
Q 017305 131 NCNVAIAAARL---GLDCVTIGH 150 (374)
Q Consensus 131 a~NvA~~larL---G~~~~~v~~ 150 (374)
|...|+.|++. |.++.++=+
T Consensus 15 Gl~~A~~L~~~~~~G~~v~v~E~ 37 (395)
T PRK05732 15 GATLALALSRLSHGGLPVALIEA 37 (395)
T ss_pred HHHHHHHhhhcccCCCEEEEEeC
Confidence 56889999999 999999886
No 236
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=20.84 E-value=2.1e+02 Score=28.39 Aligned_cols=57 Identities=16% Similarity=0.134 Sum_probs=38.5
Q ss_pred CCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCC--------CCChHHHHHHHhhhccCcEEecCH
Q 017305 246 ELSPALIISALEYAAQVGTSIFFDPGPRGKSLS--------SGTPEEQRALSYFLSTSDVLLLTS 302 (374)
Q Consensus 246 ~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~--------~~~~~~~~~~~~ll~~~Dil~~N~ 302 (374)
..+.+.+.++.+.|+++|++++.|......+-+ -.+...++...+++.++|.+..+-
T Consensus 187 pvs~~~l~~I~elA~~~Gl~vi~DaAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~~aD~~~~S~ 251 (450)
T TIGR02618 187 PVSMANMREVRELCEAHGIKVFYDATRCVENAYFIKEREQGYEDKSIAEILKEMMSYADGCTMSG 251 (450)
T ss_pred eCCHHHHHHHHHHHHHcCCEEEEEccchhhChhhhhcccccccCCCHHHHHHHHhccCcEEEEee
Confidence 345577889999999999999999865432111 001123566788888998876553
No 237
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=20.80 E-value=6.5e+02 Score=22.94 Aligned_cols=77 Identities=12% Similarity=0.182 Sum_probs=45.1
Q ss_pred HHHhhccCCcEEEEecCCC-CCCC----HHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEec
Q 017305 226 EVKTAIKHSKVLFCNGYGF-DELS----PALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLL 300 (374)
Q Consensus 226 ~~~~~l~~~~~v~~~g~~~-~~~~----~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~ 300 (374)
.+.+.+.++|++++.|-.. .+.. .-....++..|+..|+++++=.++... + ..+..+.....+++.+|.+.+
T Consensus 57 ~~~~~l~~~D~vI~gGG~l~~d~~~~~~~~~~~~~~~~a~~~~k~~~~~g~giGP-~--~~~~~r~~~~~~l~~~~~i~v 133 (298)
T TIGR03609 57 AVLRALRRADVVIWGGGSLLQDVTSFRSLLYYLGLMRLARLFGKPVILWGQGIGP-L--RRRLSRWLVRRVLRGCRAISV 133 (298)
T ss_pred HHHHHHHHCCEEEECCcccccCCcccccHHHHHHHHHHHHHcCCCEEEEecccCC-c--CCHHHHHHHHHHHccCCEEEE
Confidence 4456688899888776432 2211 112234556777888877664443321 2 123345567788999999987
Q ss_pred CHHHH
Q 017305 301 TSDEA 305 (374)
Q Consensus 301 N~~Ea 305 (374)
=++..
T Consensus 134 RD~~S 138 (298)
T TIGR03609 134 RDAAS 138 (298)
T ss_pred eCHHH
Confidence 44433
No 238
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=20.77 E-value=3.7e+02 Score=25.96 Aligned_cols=39 Identities=8% Similarity=0.089 Sum_probs=29.5
Q ss_pred ccCCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCe-EEEcCCCCCC
Q 017305 231 IKHSKVLFCNGYGFDELSPALIISALEYAAQVGTS-IFFDPGPRGK 275 (374)
Q Consensus 231 l~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~-v~~D~~~~~~ 275 (374)
+.++|+++++ .+.+...++...+.+.|++ +++|.++..+
T Consensus 63 ~~~~Divf~a------~~~~~s~~~~~~~~~aG~~~~VID~Ss~fR 102 (369)
T PRK06598 63 LKKLDIIITC------QGGDYTNEVYPKLRAAGWQGYWIDAASTLR 102 (369)
T ss_pred hcCCCEEEEC------CCHHHHHHHHHHHHhCCCCeEEEECChHHh
Confidence 5679999885 3456778888888888874 7899887543
No 239
>PLN02409 serine--glyoxylate aminotransaminase
Probab=20.73 E-value=7.1e+02 Score=23.97 Aligned_cols=45 Identities=13% Similarity=0.088 Sum_probs=23.7
Q ss_pred CCcHHHHHHHHHHcC-CCeEEEEEecCchhHHHHHHHHHhcCCcccce
Q 017305 128 AGGNCNVAIAAARLG-LDCVTIGHVGNEIYGRFLLDVLQDEGIGMVGM 174 (374)
Q Consensus 128 GG~a~NvA~~larLG-~~~~~v~~vG~D~~G~~i~~~L~~~GVd~~~v 174 (374)
+|.+++.+.....+. .+-.++... +.++..+.+.+++.|+++..+
T Consensus 68 ~gt~a~~~a~~~~~~~Gd~Vlv~~~--~~~~~~~~~~~~~~g~~v~~v 113 (401)
T PLN02409 68 TGTGAWESALTNTLSPGDKVVSFRI--GQFSLLWIDQMQRLNFDVDVV 113 (401)
T ss_pred CcHHHHHHHHHhcCCCCCEEEEeCC--CchhHHHHHHHHHcCCceEEE
Confidence 444554444333332 233444443 346666667777778776554
No 240
>PRK13748 putative mercuric reductase; Provisional
Probab=20.70 E-value=1.6e+02 Score=29.88 Aligned_cols=47 Identities=21% Similarity=0.287 Sum_probs=35.5
Q ss_pred ccCCc--HHHHHHHHHHcCCCeEEEEEe-----cCchhHHHHHHHHHhcCCccc
Q 017305 126 WEAGG--NCNVAIAAARLGLDCVTIGHV-----GNEIYGRFLLDVLQDEGIGMV 172 (374)
Q Consensus 126 ~~GG~--a~NvA~~larLG~~~~~v~~v-----G~D~~G~~i~~~L~~~GVd~~ 172 (374)
..||+ +.=.|..++++|.++.++..- .+...++.+.+.|++.||++.
T Consensus 275 ViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~gI~i~ 328 (561)
T PRK13748 275 VIGSSVVALELAQAFARLGSKVTILARSTLFFREDPAIGEAVTAAFRAEGIEVL 328 (561)
T ss_pred EECCCHHHHHHHHHHHHcCCEEEEEecCccccccCHHHHHHHHHHHHHCCCEEE
Confidence 34665 567788999999999999741 123477888999999999864
No 241
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=20.65 E-value=67 Score=29.82 Aligned_cols=67 Identities=13% Similarity=0.093 Sum_probs=43.9
Q ss_pred cCCcEEEEecCCC----CCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCH
Q 017305 232 KHSKVLFCNGYGF----DELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTS 302 (374)
Q Consensus 232 ~~~~~v~~~g~~~----~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~ 302 (374)
.+..+|+++-... ...+.+.+.++.+.|+++|+++.+|-.- +|..-......+.++..++|.+.++-
T Consensus 123 ~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGAR----l~~a~~~~~~~~~e~~~~~D~v~~~~ 193 (290)
T PF01212_consen 123 PQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGAR----LANAAAALGVSLAEIAAGADSVSFGG 193 (290)
T ss_dssp GGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETT----HHHHHCHHHHHHHHHHTTSSEEEEET
T ss_pred CCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhh----HHHhhhcccccHHHHhhhCCEEEEEE
Confidence 3456787775432 1356788999999999999999999763 32211123456678888999887763
No 242
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=20.61 E-value=4e+02 Score=22.51 Aligned_cols=84 Identities=18% Similarity=0.165 Sum_probs=44.3
Q ss_pred HHHHhhccCCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHH
Q 017305 225 AEVKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDE 304 (374)
Q Consensus 225 ~~~~~~l~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~E 304 (374)
.+....+++ |+++++-- +........+++++|+++|...+-. ++... + + ++ .+=.++.+|
T Consensus 99 ~dNlhll~g-DVvvi~IA--GGdT~PvTaaii~ya~~rG~~TisT-~GVFG-i--g--------eE-----ev~v~~~ee 158 (217)
T COG4015 99 KDNLHLLKG-DVVVICIA--GGDTIPVTAAIINYAKERGIKTIST-NGVFG-I--G--------EE-----EVKVCDAEE 158 (217)
T ss_pred ccchhhhcC-CEEEEEec--CCCcchhHHHHHHHHHHcCceEeec-Cceee-c--c--------hh-----heEEeehhh
Confidence 333444444 66665432 2333346778999999999765433 22211 1 0 11 123344555
Q ss_pred HHHhhCCCCHHHHHHHHHHcCCCccEEEEEcCC
Q 017305 305 AESLTGLRNPITAGQELLRKGLRTKWVVVKMGP 337 (374)
Q Consensus 305 a~~l~g~~~~~~~~~~l~~~g~~~~~vvvT~G~ 337 (374)
++- -+...+++.|.. ..++|+.|.
T Consensus 159 A~g--------P~~~~lldeg~~-dHilVgTgk 182 (217)
T COG4015 159 AKG--------PAKFLLLDEGGP-DHILVGTGK 182 (217)
T ss_pred cCc--------cHHHHHHhcCCC-ceEEEecCc
Confidence 532 245667777753 678887654
No 243
>PRK04148 hypothetical protein; Provisional
Probab=20.53 E-value=2.3e+02 Score=22.98 Aligned_cols=37 Identities=19% Similarity=0.280 Sum_probs=29.3
Q ss_pred hccCCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCC
Q 017305 230 AIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPG 271 (374)
Q Consensus 230 ~l~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~ 271 (374)
..+++|+++-. ..++|....+++.|++-|+.+++-+=
T Consensus 74 ~y~~a~liysi-----rpp~el~~~~~~la~~~~~~~~i~~l 110 (134)
T PRK04148 74 IYKNAKLIYSI-----RPPRDLQPFILELAKKINVPLIIKPL 110 (134)
T ss_pred HHhcCCEEEEe-----CCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 35678888863 56788999999999999988877653
No 244
>PRK14694 putative mercuric reductase; Provisional
Probab=20.51 E-value=1.7e+02 Score=29.01 Aligned_cols=45 Identities=22% Similarity=0.328 Sum_probs=35.3
Q ss_pred cCCc--HHHHHHHHHHcCCCeEEEEEec------CchhHHHHHHHHHhcCCccc
Q 017305 127 EAGG--NCNVAIAAARLGLDCVTIGHVG------NEIYGRFLLDVLQDEGIGMV 172 (374)
Q Consensus 127 ~GG~--a~NvA~~larLG~~~~~v~~vG------~D~~G~~i~~~L~~~GVd~~ 172 (374)
.||+ +.-.|..++++|.++.++.. + +...++.+.+.|++.||++.
T Consensus 184 iG~G~~G~E~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~l~~~l~~~GI~v~ 236 (468)
T PRK14694 184 IGASVVALELAQAFARLGSRVTVLAR-SRVLSQEDPAVGEAIEAAFRREGIEVL 236 (468)
T ss_pred ECCCHHHHHHHHHHHHcCCeEEEEEC-CCCCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 4555 66788999999999999975 2 12467889999999999864
No 245
>PRK06194 hypothetical protein; Provisional
Probab=20.50 E-value=3.2e+02 Score=24.56 Aligned_cols=45 Identities=20% Similarity=0.186 Sum_probs=28.2
Q ss_pred CCcHHHHHHHHHHcCCCeEEEEEecCchhHHHHHHHHHhcCCcccce
Q 017305 128 AGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQDEGIGMVGM 174 (374)
Q Consensus 128 GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~~~L~~~GVd~~~v 174 (374)
||-|..+|..|++.|.++.+++. +....+.+.+.+...|..+..+
T Consensus 16 ggIG~~la~~l~~~G~~V~~~~r--~~~~~~~~~~~~~~~~~~~~~~ 60 (287)
T PRK06194 16 SGFGLAFARIGAALGMKLVLADV--QQDALDRAVAELRAQGAEVLGV 60 (287)
T ss_pred cHHHHHHHHHHHHCCCEEEEEeC--ChHHHHHHHHHHHhcCCeEEEE
Confidence 45578899999999998877654 2123345555565555554333
No 246
>COG1973 HypE Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=20.43 E-value=1.7e+02 Score=27.63 Aligned_cols=90 Identities=24% Similarity=0.263 Sum_probs=56.1
Q ss_pred HHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCCCCHHHHHHHHHHcCCCccEE-EE
Q 017305 255 ALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRNPITAGQELLRKGLRTKWV-VV 333 (374)
Q Consensus 255 ~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~~~~~~~~~~l~~~g~~~~~v-vv 333 (374)
+.+..+-.|+..+||-......+ +|.-.+.++++ .+|.+=++.+-+..++..+.++...+.+...|++...| -|
T Consensus 304 A~EISkta~v~lvfDeekv~sli---NpkVl~MLeel--~ID~lGvSiDslmii~ped~a~~v~k~~~~agvr~~~vG~V 378 (449)
T COG1973 304 ALEISKTAGVSLVFDEEKVRSLI---NPKVLKMLEEL--NIDPLGVSIDSLMIIAPEDVADLVKKALRGAGVRAEEVGRV 378 (449)
T ss_pred HHHhhhhcCeeEEEcHHHHHhhc---CHHHHHHHHHc--CCCccccccceEEEecchhhhHHHHHHHHhcCcceeEEeee
Confidence 44566777889999965332211 33333333332 47777777777766666666677777787777743221 35
Q ss_pred EcCCCceEEEeCCceE
Q 017305 334 KMGPRGSILVTKSSIS 349 (374)
Q Consensus 334 T~G~~Ga~~~~~~~~~ 349 (374)
.-|..|+++..+++..
T Consensus 379 ee~~~~~~l~~~gee~ 394 (449)
T COG1973 379 EEGGQGVILVDGGEER 394 (449)
T ss_pred ecCCcceEEEECCEee
Confidence 6677889998887654
No 247
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=20.42 E-value=6.7e+02 Score=23.50 Aligned_cols=39 Identities=13% Similarity=0.055 Sum_probs=21.5
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCC
Q 017305 233 HSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPG 271 (374)
Q Consensus 233 ~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~ 271 (374)
+.++|+++......-....+.++.+.++++|+.+++|..
T Consensus 139 ~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~li~D~a 177 (373)
T cd06453 139 RTKLVAVTHVSNVLGTINPVKEIGEIAHEAGVPVLVDGA 177 (373)
T ss_pred CceEEEEeCcccccCCcCCHHHHHHHHHHcCCEEEEEhh
Confidence 456666543211000111245677777788888888864
No 248
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=20.29 E-value=8.3e+02 Score=24.02 Aligned_cols=79 Identities=13% Similarity=0.152 Sum_probs=48.3
Q ss_pred HHHhhccCCcEEEEecCCC-CCC-CHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHH
Q 017305 226 EVKTAIKHSKVLFCNGYGF-DEL-SPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSD 303 (374)
Q Consensus 226 ~~~~~l~~~~~v~~~g~~~-~~~-~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~ 303 (374)
+..+.++++|+++..|-.. .+. ....... +..|+..|+++++=+++... + .++..+.....++.++|.|.+=++
T Consensus 110 ~~~~~l~~aDlvI~gGG~lfqD~y~~~~~~y-~l~A~l~gkpv~l~gqsiGP-f--~~~~~r~l~r~vl~~~~~ItvRD~ 185 (426)
T PRK10017 110 DFVRLLSGYDAIIQVGGSFFVDLYGVPQFEH-ALCAFMAKKPLYMIGHSVGP-F--QDEQFNQLANYVFGHCDALILRES 185 (426)
T ss_pred HHHHHHHhCCEEEECCCCccccCcccHHHHH-HHHHHHcCCCEEEECCcCCC-c--CCHHHHHHHHHHHhcCCEEEEccH
Confidence 3456789999998766322 222 1122222 23567788888776654331 2 134456677888999999988766
Q ss_pred HHHHh
Q 017305 304 EAESL 308 (374)
Q Consensus 304 Ea~~l 308 (374)
....+
T Consensus 186 ~S~~~ 190 (426)
T PRK10017 186 VSLDL 190 (426)
T ss_pred HHHHH
Confidence 65543
No 249
>PLN02762 pyruvate kinase complex alpha subunit
Probab=20.23 E-value=7.6e+02 Score=25.03 Aligned_cols=81 Identities=10% Similarity=0.122 Sum_probs=52.5
Q ss_pred HHHhhccCCcEEEEecCCC-CCCCHH----HHHHHHHHHHhcCCeEEEcCCCCCCCC---CCCChHHHHHHHhhhccCcE
Q 017305 226 EVKTAIKHSKVLFCNGYGF-DELSPA----LIISALEYAAQVGTSIFFDPGPRGKSL---SSGTPEEQRALSYFLSTSDV 297 (374)
Q Consensus 226 ~~~~~l~~~~~v~~~g~~~-~~~~~~----~~~~~~~~a~~~g~~v~~D~~~~~~~~---~~~~~~~~~~~~~ll~~~Di 297 (374)
.+.+.++.+|.+.+.---+ -+++.+ .-+.+++.|++.|++|++-.+-...+. ...+.+.-+....++..+|.
T Consensus 261 nl~eIi~~sDgiMVARGDLGvEip~e~vp~~QK~II~~c~~~gKPVIvATQmLeSMi~np~PTRAEvsDVaNAVlDGtDa 340 (509)
T PLN02762 261 NLEEIIRASDGAMVARGDLGAQIPLEQVPSVQEKIVRLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADA 340 (509)
T ss_pred HHHHHHHhcCEEEEecCccccccCHHHhHHHHHHHHHHHHHhCCCEEEECchHHhhhhCCCCCchhHHHHHHHHHhCCCE
Confidence 3455677788887754322 345543 446788899999999998665322111 11234555666778999999
Q ss_pred EecCHHHHH
Q 017305 298 LLLTSDEAE 306 (374)
Q Consensus 298 l~~N~~Ea~ 306 (374)
+.++.+-+.
T Consensus 341 vMLSgETA~ 349 (509)
T PLN02762 341 LMLSGESAM 349 (509)
T ss_pred EEEcchhcC
Confidence 999976654
No 250
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=20.13 E-value=3.1e+02 Score=21.18 Aligned_cols=38 Identities=13% Similarity=0.129 Sum_probs=23.1
Q ss_pred cCCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCC
Q 017305 232 KHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGP 272 (374)
Q Consensus 232 ~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~ 272 (374)
.+-|++++-++ ...+. .+.++++.||++|++++.=.+.
T Consensus 46 ~~~d~vi~iS~--sG~t~-~~~~~~~~a~~~g~~vi~iT~~ 83 (128)
T cd05014 46 TPGDVVIAISN--SGETD-ELLNLLPHLKRRGAPIIAITGN 83 (128)
T ss_pred CCCCEEEEEeC--CCCCH-HHHHHHHHHHHCCCeEEEEeCC
Confidence 34455554433 23333 4667888999999887664443
No 251
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=20.11 E-value=6.2e+02 Score=22.43 Aligned_cols=91 Identities=20% Similarity=0.135 Sum_probs=53.7
Q ss_pred ccCCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChH-HHHHHHhhhccCcEEecCHHHHHHhh
Q 017305 231 IKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPE-EQRALSYFLSTSDVLLLTSDEAESLT 309 (374)
Q Consensus 231 l~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~-~~~~~~~ll~~~Dil~~N~~Ea~~l~ 309 (374)
-.++||+.+.| --+.+++...++.|++.|..+.+|.-... +++ ..+.+.+ -.+|++..-..-=.+..
T Consensus 78 ~aGAd~~tV~g----~A~~~TI~~~i~~A~~~~~~v~iDl~~~~------~~~~~~~~l~~--~gvd~~~~H~g~D~q~~ 145 (217)
T COG0269 78 EAGADWVTVLG----AADDATIKKAIKVAKEYGKEVQIDLIGVW------DPEQRAKWLKE--LGVDQVILHRGRDAQAA 145 (217)
T ss_pred HcCCCEEEEEe----cCCHHHHHHHHHHHHHcCCeEEEEeecCC------CHHHHHHHHHH--hCCCEEEEEecccHhhc
Confidence 45799998875 34578899999999999999999986532 222 1222222 35666655433222235
Q ss_pred CCCC---HHHHHHHHHHcCCCccEEEEEcC
Q 017305 310 GLRN---PITAGQELLRKGLRTKWVVVKMG 336 (374)
Q Consensus 310 g~~~---~~~~~~~l~~~g~~~~~vvvT~G 336 (374)
|... ..+..+++.+.|. .+-|+-|
T Consensus 146 G~~~~~~~l~~ik~~~~~g~---~vAVaGG 172 (217)
T COG0269 146 GKSWGEDDLEKIKKLSDLGA---KVAVAGG 172 (217)
T ss_pred CCCccHHHHHHHHHhhccCc---eEEEecC
Confidence 6543 2234455555543 3555643
Done!