Query 017305
Match_columns 374
No_of_seqs 292 out of 1650
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 12:17:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017305.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017305hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ljs_A Fructokinase; fructokia 100.0 4.3E-40 1.5E-44 311.9 15.4 263 80-372 3-268 (338)
2 3ry7_A Ribokinase; transferase 100.0 3.9E-39 1.3E-43 300.8 21.0 253 81-372 2-260 (304)
3 3pl2_A Sugar kinase, ribokinas 100.0 1.8E-38 6.3E-43 298.3 23.2 265 78-372 5-271 (319)
4 4e3a_A Sugar kinase protein; s 100.0 4.8E-39 1.6E-43 306.2 19.4 270 77-372 21-306 (352)
5 3vas_A Putative adenosine kina 100.0 1.1E-39 3.6E-44 312.9 14.3 276 68-372 11-326 (370)
6 1rkd_A Ribokinase; carbohydrat 100.0 1.3E-38 4.5E-43 297.9 21.0 254 80-372 3-261 (309)
7 4du5_A PFKB; structural genomi 100.0 3.6E-38 1.2E-42 298.5 23.2 263 80-372 25-291 (336)
8 3iq0_A Putative ribokinase II; 100.0 5.5E-39 1.9E-43 303.3 17.5 261 80-372 2-266 (330)
9 4e69_A 2-dehydro-3-deoxyglucon 100.0 2.2E-38 7.5E-43 298.9 21.5 259 79-372 21-285 (328)
10 2fv7_A Ribokinase; structural 100.0 1.4E-38 4.8E-43 300.7 20.0 255 80-372 23-284 (331)
11 3hj6_A Fructokinase, FRK; fruc 100.0 1.5E-39 5.2E-44 306.8 13.0 262 79-372 19-281 (327)
12 3lhx_A Ketodeoxygluconokinase; 100.0 2.2E-38 7.5E-43 297.8 19.8 256 82-372 5-272 (319)
13 1tyy_A Putative sugar kinase; 100.0 6.2E-39 2.1E-43 304.1 14.4 256 79-372 22-278 (339)
14 2rbc_A Sugar kinase, AGR_C_456 100.0 5.5E-38 1.9E-42 297.9 20.8 252 80-372 28-282 (343)
15 2qcv_A Putative 5-dehydro-2-de 100.0 2E-37 6.8E-42 292.8 22.3 270 75-372 5-279 (332)
16 3h49_A Ribokinase; transferase 100.0 5E-37 1.7E-41 289.3 24.4 256 79-372 3-268 (325)
17 3otx_A Adenosine kinase, putat 100.0 7E-38 2.4E-42 297.8 17.0 263 80-372 6-307 (347)
18 3go6_A Ribokinase RBSK; phosph 100.0 2.7E-37 9.3E-42 289.2 19.9 237 80-372 18-254 (310)
19 3loo_A Anopheles gambiae adeno 100.0 7.9E-38 2.7E-42 299.4 16.1 273 77-372 19-323 (365)
20 3kzh_A Probable sugar kinase; 100.0 7.5E-38 2.6E-42 295.3 15.6 254 79-372 4-263 (328)
21 3ktn_A Carbohydrate kinase, PF 100.0 1.4E-36 4.6E-41 288.8 21.8 261 81-372 2-286 (346)
22 2v78_A Fructokinase; transfera 100.0 3.8E-37 1.3E-41 288.6 17.0 257 82-372 2-264 (313)
23 3ikh_A Carbohydrate kinase; tr 100.0 2.9E-37 9.9E-42 287.6 15.4 234 82-372 3-241 (299)
24 2c4e_A Sugar kinase MJ0406; tr 100.0 2.6E-37 8.8E-42 288.3 14.0 248 81-372 5-253 (302)
25 2jg1_A Tagatose-6-phosphate ki 100.0 3.9E-36 1.3E-40 283.8 20.6 256 77-372 16-280 (330)
26 4e84_A D-beta-D-heptose 7-phos 100.0 9.3E-37 3.2E-41 290.3 16.2 258 72-372 44-312 (352)
27 1v1a_A 2-keto-3-deoxygluconate 100.0 4.3E-36 1.5E-40 280.9 20.1 253 82-372 2-257 (309)
28 1vm7_A Ribokinase; TM0960, str 100.0 4.4E-36 1.5E-40 281.2 20.0 244 82-372 15-264 (311)
29 1bx4_A Protein (adenosine kina 100.0 1.1E-36 3.8E-41 289.2 16.1 271 80-372 5-306 (345)
30 2dcn_A Hypothetical fructokina 100.0 1.4E-36 4.7E-41 284.5 15.7 255 82-372 2-262 (311)
31 2nwh_A AGR_C_3442P, carbohydra 100.0 2E-36 6.8E-41 284.2 16.7 254 82-372 4-261 (317)
32 3cqd_A 6-phosphofructokinase i 100.0 1.9E-35 6.6E-40 276.4 22.0 250 83-372 3-262 (309)
33 2ajr_A Sugar kinase, PFKB fami 100.0 3.5E-36 1.2E-40 284.3 17.0 256 80-372 11-279 (331)
34 2f02_A Tagatose-6-phosphate ki 100.0 7.6E-36 2.6E-40 281.0 19.1 251 82-372 3-263 (323)
35 3ie7_A LIN2199 protein; phosph 100.0 2.6E-35 8.9E-40 276.9 21.3 251 82-372 3-259 (320)
36 2hlz_A Ketohexokinase; non-pro 100.0 4.7E-35 1.6E-39 274.3 21.8 251 79-372 15-278 (312)
37 3umo_A 6-phosphofructokinase i 100.0 6.4E-35 2.2E-39 272.9 21.5 250 84-372 5-262 (309)
38 2abs_A Adenosine kinase, AK; r 100.0 3E-35 1E-39 283.3 17.5 268 79-372 30-344 (383)
39 2qhp_A Fructokinase; NP_810670 100.0 5.8E-35 2E-39 271.5 18.5 242 82-372 4-253 (296)
40 2abq_A Fructose 1-phosphate ki 100.0 1.3E-34 4.4E-39 270.5 20.5 248 83-372 2-255 (306)
41 3uq6_A Adenosine kinase, putat 100.0 5.6E-35 1.9E-39 280.3 18.1 275 79-372 24-328 (372)
42 4gm6_A PFKB family carbohydrat 100.0 6.9E-35 2.3E-39 277.5 17.9 282 63-372 4-299 (351)
43 3ewm_A Uncharacterized sugar k 100.0 1.3E-34 4.6E-39 271.3 18.8 251 81-372 1-253 (313)
44 3b1n_A Ribokinase, putative; r 100.0 1.1E-34 3.8E-39 273.3 17.5 244 83-372 2-259 (326)
45 2jg5_A Fructose 1-phosphate ki 100.0 3.9E-34 1.3E-38 267.1 19.5 248 83-372 2-255 (306)
46 2pkf_A Adenosine kinase; trans 100.0 1.1E-34 3.8E-39 274.3 15.6 250 81-372 10-273 (334)
47 2afb_A 2-keto-3-deoxygluconate 100.0 1.7E-32 5.8E-37 261.0 24.3 260 80-372 11-298 (351)
48 3kd6_A Carbohydrate kinase, PF 100.0 5.6E-33 1.9E-37 260.3 17.4 239 82-372 3-245 (313)
49 3bf5_A Ribokinase related prot 100.0 4.3E-34 1.5E-38 267.0 5.7 236 78-372 17-252 (306)
50 1vk4_A PFKB carbohydrate kinas 100.0 3.7E-29 1.3E-33 232.7 13.5 238 83-372 13-252 (298)
51 2yxt_A Pyridoxal kinase; beta 99.8 2.5E-19 8.7E-24 167.3 7.1 196 144-372 12-241 (312)
52 2ddm_A Pyridoxine kinase; pyri 99.8 9.6E-19 3.3E-23 161.0 9.5 202 141-372 19-239 (283)
53 1jxh_A Phosphomethylpyrimidine 99.7 5.8E-17 2E-21 149.5 10.5 132 233-372 94-241 (288)
54 2i5b_A Phosphomethylpyrimidine 99.6 9E-15 3.1E-19 133.5 16.2 134 233-372 74-222 (271)
55 1ub0_A THID, phosphomethylpyri 99.6 7E-15 2.4E-19 133.2 11.3 132 233-372 70-216 (258)
56 3pzs_A PM kinase, pyridoxamine 99.5 1.3E-14 4.5E-19 133.7 8.6 137 231-372 75-232 (289)
57 3mbh_A Putative phosphomethylp 99.5 1.7E-13 5.7E-18 126.3 11.5 136 233-372 77-231 (291)
58 3zs7_A Pyridoxal kinase; trans 99.4 4E-13 1.4E-17 124.3 9.5 136 232-372 75-235 (300)
59 3h74_A Pyridoxal kinase; PSI-I 99.4 9.6E-13 3.3E-17 120.7 11.8 134 233-372 74-221 (282)
60 1ekq_A Hydroxyethylthiazole ki 99.2 9.5E-11 3.2E-15 106.8 10.5 133 228-369 53-201 (272)
61 3rm5_A Hydroxymethylpyrimidine 99.0 9E-10 3.1E-14 110.0 10.1 131 233-371 91-247 (550)
62 1v8a_A Hydroxyethylthiazole ki 98.7 4.4E-08 1.5E-12 88.6 9.0 133 225-369 48-198 (265)
63 3dzv_A 4-methyl-5-(beta-hydrox 98.1 4E-05 1.4E-09 69.1 13.2 133 225-368 50-205 (273)
64 3bgk_A SMU.573, putative uncha 97.7 2.3E-05 7.9E-10 72.2 4.8 117 230-368 122-253 (311)
65 3rpz_A ADP/ATP-dependent NAD(P 97.6 0.00023 7.8E-09 64.4 9.7 120 231-368 96-221 (279)
66 2r3b_A YJEF-related protein; p 97.6 0.00024 8.1E-09 65.4 9.9 118 230-368 108-237 (310)
67 3rss_A Putative uncharacterize 97.5 0.00033 1.1E-08 68.7 10.4 126 226-368 313-445 (502)
68 3nl6_A Thiamine biosynthetic b 97.5 0.0019 6.6E-08 63.8 15.6 111 224-345 296-425 (540)
69 3hpd_A Hydroxyethylthiazole ki 97.4 0.00043 1.5E-08 61.9 7.8 120 225-353 48-182 (265)
70 3drw_A ADP-specific phosphofru 96.9 0.0014 4.8E-08 63.1 6.7 173 123-310 112-318 (474)
71 1ua4_A Glucokinase, ADP-depend 96.5 0.012 4E-07 56.7 9.7 168 126-309 109-300 (455)
72 1l2l_A ADP-dependent glucokina 96.1 0.023 8E-07 54.5 9.8 167 126-308 112-302 (457)
73 1gc5_A ADP-dependent glucokina 96.1 0.049 1.7E-06 52.4 12.0 167 126-308 117-312 (467)
74 3k5w_A Carbohydrate kinase; 11 85.4 0.43 1.5E-05 46.2 3.0 116 232-368 291-417 (475)
75 3can_A Pyruvate-formate lyase- 76.5 20 0.00068 29.0 10.0 81 236-326 6-93 (182)
76 2l82_A Designed protein OR32; 70.8 30 0.001 25.7 10.0 122 134-305 18-140 (162)
77 2cul_A Glucose-inhibited divis 57.6 15 0.0005 31.2 5.4 20 131-150 15-34 (232)
78 3c8f_A Pyruvate formate-lyase 54.0 82 0.0028 26.2 9.7 84 235-326 71-161 (245)
79 1qyd_A Pinoresinol-lariciresin 52.8 91 0.0031 27.1 10.2 24 128-151 14-37 (313)
80 4fk1_A Putative thioredoxin re 52.0 13 0.00044 32.9 4.2 20 131-150 18-37 (304)
81 2yci_X 5-methyltetrahydrofolat 49.4 1.2E+02 0.004 26.6 10.0 91 231-339 45-137 (271)
82 3r3s_A Oxidoreductase; structu 47.5 50 0.0017 29.0 7.4 47 128-174 59-105 (294)
83 3i6i_A Putative leucoanthocyan 46.7 73 0.0025 28.4 8.6 25 128-152 20-44 (346)
84 3ijr_A Oxidoreductase, short c 46.3 38 0.0013 29.7 6.5 47 128-175 57-103 (291)
85 2fcj_A Small toprim domain pro 46.1 29 0.001 26.4 4.7 83 228-325 20-105 (119)
86 3oz2_A Digeranylgeranylglycero 44.0 15 0.00052 33.4 3.5 19 131-149 16-34 (397)
87 3i3l_A Alkylhalidase CMLS; fla 43.5 19 0.00066 35.6 4.3 20 131-150 35-54 (591)
88 3kbq_A Protein TA0487; structu 43.2 33 0.0011 27.9 5.0 20 154-173 22-41 (172)
89 2ywl_A Thioredoxin reductase r 36.0 43 0.0015 26.6 4.7 44 128-171 8-73 (180)
90 3nvt_A 3-deoxy-D-arabino-heptu 35.2 1E+02 0.0034 28.6 7.5 94 232-338 168-288 (385)
91 4a5l_A Thioredoxin reductase; 33.6 37 0.0012 29.7 4.2 19 131-149 16-34 (314)
92 3vzx_A Heptaprenylglyceryl pho 33.5 70 0.0024 27.3 5.7 40 231-272 29-68 (228)
93 3o1n_A 3-dehydroquinate dehydr 32.1 2.1E+02 0.0072 25.0 8.8 95 234-340 134-234 (276)
94 2wqp_A Polysialic acid capsule 29.8 70 0.0024 29.3 5.4 49 246-306 87-136 (349)
95 3axb_A Putative oxidoreductase 29.5 32 0.0011 32.2 3.2 20 131-150 35-55 (448)
96 2re2_A Uncharacterized protein 28.9 30 0.001 26.9 2.4 38 128-171 65-102 (136)
97 1y5e_A Molybdenum cofactor bio 28.6 57 0.002 26.2 4.2 34 131-166 33-66 (169)
98 3g8r_A Probable spore coat pol 28.2 80 0.0027 28.9 5.4 48 246-305 74-122 (350)
99 3w01_A Heptaprenylglyceryl pho 26.0 1.2E+02 0.0041 26.0 5.9 40 231-272 34-73 (235)
100 1f6y_A 5-methyltetrahydrofolat 25.4 3.3E+02 0.011 23.5 10.6 41 231-271 36-77 (262)
101 1vli_A Spore coat polysacchari 24.9 74 0.0025 29.5 4.6 48 247-306 98-146 (385)
102 2pjk_A 178AA long hypothetical 24.9 60 0.0021 26.4 3.7 35 130-166 41-75 (178)
103 3tjr_A Short chain dehydrogena 24.7 1.3E+02 0.0046 26.2 6.3 47 128-176 41-87 (301)
104 1zco_A 2-dehydro-3-deoxyphosph 24.7 1.8E+02 0.0061 25.2 6.9 63 232-306 49-118 (262)
105 3pzy_A MOG; ssgcid, seattle st 24.3 1.2E+02 0.004 24.3 5.2 23 132-154 30-52 (164)
106 3urh_A Dihydrolipoyl dehydroge 24.1 64 0.0022 30.7 4.3 33 77-148 21-54 (491)
107 1mkz_A Molybdenum cofactor bio 24.1 58 0.002 26.3 3.4 66 154-259 27-94 (172)
108 1y81_A Conserved hypothetical 24.1 2.4E+02 0.0082 21.5 7.6 24 147-170 16-43 (138)
109 1ebd_A E3BD, dihydrolipoamide 23.8 82 0.0028 29.5 5.0 46 127-172 176-229 (455)
110 3qfa_A Thioredoxin reductase 1 23.7 94 0.0032 29.8 5.4 46 126-172 215-268 (519)
111 3awd_A GOX2181, putative polyo 23.7 1.6E+02 0.0053 24.7 6.4 45 128-174 23-67 (260)
112 3oec_A Carveol dehydrogenase ( 23.4 1.3E+02 0.0046 26.5 6.1 48 128-175 56-113 (317)
113 2r6j_A Eugenol synthase 1; phe 22.8 3.5E+02 0.012 23.3 8.8 24 128-151 21-44 (318)
114 2is8_A Molybdopterin biosynthe 22.8 46 0.0016 26.7 2.5 21 134-154 26-46 (164)
115 1tqj_A Ribulose-phosphate 3-ep 22.6 3.4E+02 0.012 22.7 8.8 81 229-324 130-220 (230)
116 2eq6_A Pyruvate dehydrogenase 22.6 75 0.0026 29.9 4.4 46 127-172 175-228 (464)
117 3rp8_A Flavoprotein monooxygen 22.4 67 0.0023 29.4 4.0 20 131-150 35-54 (407)
118 3o0h_A Glutathione reductase; 22.3 72 0.0025 30.2 4.3 49 61-148 4-55 (484)
119 3qfa_A Thioredoxin reductase 1 22.3 87 0.003 30.1 4.9 20 131-150 44-63 (519)
120 2gqf_A Hypothetical protein HI 21.9 63 0.0022 29.9 3.7 19 131-149 16-34 (401)
121 3rfq_A Pterin-4-alpha-carbinol 21.7 98 0.0033 25.4 4.3 22 133-154 53-74 (185)
122 2bc0_A NADH oxidase; flavoprot 21.7 86 0.003 29.8 4.7 46 127-172 200-254 (490)
123 3rkr_A Short chain oxidoreduct 21.6 1.4E+02 0.0047 25.4 5.7 46 128-175 39-84 (262)
124 1eo1_A Hypothetical protein MT 21.5 41 0.0014 25.4 1.9 38 129-171 52-89 (124)
125 2qcu_A Aerobic glycerol-3-phos 21.5 82 0.0028 30.1 4.5 20 131-150 15-34 (501)
126 1dxl_A Dihydrolipoamide dehydr 21.4 83 0.0028 29.6 4.4 46 127-172 183-236 (470)
127 2v3a_A Rubredoxin reductase; a 21.4 96 0.0033 28.2 4.8 46 127-172 151-205 (384)
128 3edm_A Short chain dehydrogena 21.3 1.7E+02 0.0059 24.7 6.2 46 129-175 19-64 (259)
129 2x9g_A PTR1, pteridine reducta 21.1 1.3E+02 0.0045 25.9 5.5 46 128-174 33-79 (288)
130 3dgz_A Thioredoxin reductase 2 20.9 1.1E+02 0.0038 28.9 5.3 46 127-172 191-243 (488)
131 3ec7_A Putative dehydrogenase; 20.9 4.2E+02 0.014 23.6 9.1 44 228-273 105-149 (357)
132 3fs2_A 2-dehydro-3-deoxyphosph 20.7 2.3E+02 0.008 25.1 6.9 76 249-337 98-193 (298)
133 1xhc_A NADH oxidase /nitrite r 20.4 70 0.0024 29.1 3.6 46 127-172 149-201 (367)
134 3mvn_A UDP-N-acetylmuramate:L- 20.4 3.1E+02 0.011 21.4 10.4 27 313-340 124-150 (163)
135 2wfb_A Putative uncharacterize 20.4 40 0.0014 25.3 1.6 39 128-171 53-91 (120)
136 2zxi_A TRNA uridine 5-carboxym 20.4 77 0.0026 31.6 4.0 20 131-150 39-58 (637)
137 4a9w_A Monooxygenase; baeyer-v 20.4 1.1E+02 0.0039 26.8 5.0 23 128-150 10-34 (357)
138 3dgh_A TRXR-1, thioredoxin red 20.3 1.1E+02 0.0039 28.8 5.2 45 127-172 193-245 (483)
139 2gqw_A Ferredoxin reductase; f 20.2 1.1E+02 0.0036 28.3 4.8 46 127-172 151-205 (408)
140 3kgw_A Alanine-glyoxylate amin 20.2 2.6E+02 0.0088 24.7 7.5 39 233-272 148-187 (393)
141 4h3d_A 3-dehydroquinate dehydr 20.2 4.1E+02 0.014 22.7 9.7 96 234-341 114-215 (258)
142 2a8x_A Dihydrolipoyl dehydroge 20.2 80 0.0028 29.7 4.1 46 127-172 177-230 (464)
No 1
>3ljs_A Fructokinase; fructokianse, PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.97A {Xylella fastidiosa TEMECULA1} SCOP: c.72.1.0 PDB: 3lki_A*
Probab=100.00 E-value=4.3e-40 Score=311.89 Aligned_cols=263 Identities=18% Similarity=0.218 Sum_probs=200.9
Q ss_pred CCccEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHH
Q 017305 80 KSIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRF 159 (374)
Q Consensus 80 ~~~~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~ 159 (374)
++++|+|+|++++|++...+++|... ......+||+++|+|+++++||.++.++|.+|+|.+|++
T Consensus 3 ~~~~v~viG~~~iD~~~~~~~~~~~~---------------~~~~~~~GG~~~NvA~~la~LG~~~~~ig~vG~D~~g~~ 67 (338)
T 3ljs_A 3 LKKTILCFGEALIDMLAQPLVKKGMP---------------RAFLQCAGGAPANVAVAVARLGGAVQFVGMLGSDMFGDF 67 (338)
T ss_dssp -CCEEEEESCCEEEEEECCCSSTTSC---------------CCEEEEEECHHHHHHHHHHHHTCCEEEESEEESSHHHHH
T ss_pred CCCCEEEEChhhhheeccCCCCccch---------------hceeecCCChHHHHHHHHHhCCCCEEEEeeccCCHHHHH
Confidence 56789999999999999887765431 123456799999999999999999999999999999999
Q ss_pred HHHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcccHHHHhhccCCcEEEE
Q 017305 160 LLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFC 239 (374)
Q Consensus 160 i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~~ 239 (374)
+++.|+++||+++++.+.++. +|+.+++.++++|+|++............. .+.+. .+.+++++++|+
T Consensus 68 l~~~l~~~gV~~~~v~~~~~~--------~T~~~~v~~~~~g~r~~~~~~~~~a~~~l~-~~~~~---~~~~~~~~~~~~ 135 (338)
T 3ljs_A 68 LFDSFAEAGVVTDGIVRTSTA--------KTALAFVALDAHGERSFSFYRPPAADLLFR-VEHFQ---DASFSDALIFHA 135 (338)
T ss_dssp HHHHHHHHTCBCTTCEEESSS--------CCCEEEEECCSTTCCEEEEECSSCGGGGCC-GGGCC---HHHHHTEEEEEE
T ss_pred HHHHHHHcCCCceeEEEcCCC--------CceEEEEEECCCCCeEEEEeCCCChhHhCC-HhhcC---HhHhcCCCEEEE
Confidence 999999999999999876654 388999999988999865322111000000 01122 134778999999
Q ss_pred ecCCC-CCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCCCCHHH--
Q 017305 240 NGYGF-DELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRNPIT-- 316 (374)
Q Consensus 240 ~g~~~-~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~~~~~~-- 316 (374)
+++.+ .+.+.+.+.++++.+++.|+++++|++.+.. +|.......+.+.++++++|++++|++|++.|+|..+.++
T Consensus 136 ~~~~l~~~~~~~~~~~~~~~a~~~g~~v~~Dp~~~~~-~~~~~~~~~~~~~~ll~~~dil~~N~~E~~~l~g~~~~~~~~ 214 (338)
T 3ljs_A 136 CSNSMTDADIAEVTFEGMRRAQAAGAIVSFDLNFRPM-LWPNGENPASRLWKGLSLADVVKLSSEELDYLANTLAADANA 214 (338)
T ss_dssp EGGGGSSHHHHHHHHHHHHHHHHTTCEEEEECCCCGG-GSCTTCCTHHHHHHHHHTCSEEEEEHHHHHHHHHHHTSCHHH
T ss_pred CChHhcCchHHHHHHHHHHHHHHcCCEEEEECCCChh-hcCCHHHHHHHHHHHHhhCCEEEecHHHHHHHhCCCChhHHH
Confidence 98754 3445678899999999999999999998764 5544344567788899999999999999999998655555
Q ss_pred HHHHHHHcCCCccEEEEEcCCCceEEEeCCceEEecCceeeeecccchhhhhcCCC
Q 017305 317 AGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 317 ~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
+++.|++.|+ +.||||+|++|++++++++.+++|++++++|||||+||+|++|+
T Consensus 215 ~~~~l~~~g~--~~vvvT~G~~G~~~~~~~~~~~~~~~~v~vvDttGAGDaF~a~~ 268 (338)
T 3ljs_A 215 VIQQLWQGRA--QLLLVTDAAGPVHWYTRTAGGEVPTFRVQVQDSNAAGDAFVGGM 268 (338)
T ss_dssp HHHHHTTTTC--CEEEEEETTEEEEEEESSCEEEECC-----------CHHHHHHH
T ss_pred HHHHHHhcCC--CEEEEeeCCCceEEEECCceEEeCCCCCccCCCCCccHHHHHHH
Confidence 8889988877 88999999999999999999999999999999999999998875
No 2
>3ry7_A Ribokinase; transferase; 2.15A {Staphylococcus aureus}
Probab=100.00 E-value=3.9e-39 Score=300.77 Aligned_cols=253 Identities=22% Similarity=0.301 Sum_probs=208.4
Q ss_pred CccEEEECCeeEEEeecCCCCCCCchhh-HHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHH
Q 017305 81 SIDVATLGNLCVDIVLNVPQLPPPSRDA-RKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRF 159 (374)
Q Consensus 81 ~~~vlviG~~~~D~i~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~ 159 (374)
|++|+|+|++++|+++.++++|.++++. .. ......+||+++|+|+++++||.++.++|.+|+|.+|++
T Consensus 2 m~~v~viG~~~~D~~~~~~~~p~~g~~~~~~----------~~~~~~~GG~~~NvA~~la~lG~~~~~~~~vG~D~~g~~ 71 (304)
T 3ry7_A 2 TNKVVILGSTNVDQFLTVERYAQPGETLHVE----------EAQKAFGGGKGANQAIATARMQADTTFITKIGTDGVADF 71 (304)
T ss_dssp CCEEEEECCCEEEEEEECSSCCCTTCCCCCS----------SCCEEEEECHHHHHHHHHHHTTCEEEEECEEESSCTTHH
T ss_pred CCcEEEEccceeEEEEeccCCCCCCCceecc----------cceeecCCCHHHHHHHHHHHCCCCeEEEEEeCCChHHHH
Confidence 4589999999999999999999887642 11 134567899999999999999999999999999999999
Q ss_pred HHHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcccHHHHhhccCCcEEEE
Q 017305 160 LLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFC 239 (374)
Q Consensus 160 i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~~ 239 (374)
+++.|+++||+++++.+.++. +|+.++++++++|+++++...+.......+.+ +...+.+++++++|+
T Consensus 72 i~~~l~~~gv~~~~v~~~~~~--------~T~~~~~~~~~~g~~~~~~~~ga~~~~~~~~~----~~~~~~~~~~~~v~~ 139 (304)
T 3ry7_A 72 ILEDFKVAHIDTSYIIKTAEA--------KTGQAFITVNAEGQNTIYVYGGANMTMTPEDV----INAKDAIINADFVVA 139 (304)
T ss_dssp HHHHHHHTTCBCTTCEEESSS--------CCEEEEEEECSSCCEEEEEECGGGGGCCHHHH----HTTHHHHHTCSEEEE
T ss_pred HHHHHHHcCCcchhEEEcCCC--------CCcEEEEEECCCCCEEEEEecCchhcCCHHHH----HHHHHHhccCCEEEE
Confidence 999999999999999876654 38999999998899887644321100000111 112345789999999
Q ss_pred ecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCCC-----CH
Q 017305 240 NGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLR-----NP 314 (374)
Q Consensus 240 ~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~~-----~~ 314 (374)
+ .+.+.+.+.++++.+++.|+++++|+++... + +.++++++|++++|++|++.|+|.. +.
T Consensus 140 ~----~~~~~~~~~~~~~~a~~~~~~v~~D~~~~~~-~----------~~~ll~~~dil~~N~~E~~~l~g~~~~~~~~~ 204 (304)
T 3ry7_A 140 Q----LEVPIPAIISAFEIAKAHGVTTVLNPAPAKA-L----------PNELLSLIDIIVPNETEAELLSGIKVTNEQSM 204 (304)
T ss_dssp E----TTSCHHHHHHHHHHHHHTTCEEEEECCSCCC-C----------CHHHHTTCSEECCBHHHHHHHHSCCCCSHHHH
T ss_pred c----CCCCHHHHHHHHHHHHHcCCEEEEeCCcccc-c----------cHHHHHhCCEEecCHHHHHHHhCCCCCChhHH
Confidence 8 4567889999999999999999999987532 1 2578999999999999999999974 45
Q ss_pred HHHHHHHHHcCCCccEEEEEcCCCceEEEeCCceEEecCceeeeecccchhhhhcCCC
Q 017305 315 ITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 315 ~~~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
+++++.|++.|+ +.||||+|++|++++++++.+++|+++++++||||+||+|.+|+
T Consensus 205 ~~~~~~l~~~g~--~~vvvt~G~~G~~~~~~~~~~~~~~~~v~~vdttGAGDaf~a~~ 260 (304)
T 3ry7_A 205 KDNANYFLSIGI--KTVLITLGKQGTYFATKNQSQHIEAYKVNAIDTTAAGDTFIGAF 260 (304)
T ss_dssp HHHHHHHHHTTC--CEEEEECGGGCEEEECSSCEEEECCSSCCSSCCSSHHHHHHHHH
T ss_pred HHHHHHHHHcCC--CEEEEEeCCCceEEEECCeeEEecCCCcccCCCCCchHHHHHHH
Confidence 678889998887 78999999999999998899999999999999999999998774
No 3
>3pl2_A Sugar kinase, ribokinase family; PFKB PFAM motif, inositol phosphate metabolism, ribokinase-L structural genomics; HET: MSE CIT; 1.89A {Corynebacterium glutamicum} SCOP: c.72.1.0
Probab=100.00 E-value=1.8e-38 Score=298.26 Aligned_cols=265 Identities=22% Similarity=0.280 Sum_probs=209.7
Q ss_pred CCCCccEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhH
Q 017305 78 GVKSIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYG 157 (374)
Q Consensus 78 ~~~~~~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G 157 (374)
+|++++|+|+|++++|++...+..|.... ......+||+++|+|+++++||.++.++|.+|+|.+|
T Consensus 5 ~~~~~~v~~iG~~~~D~~~~~~~~p~~~~--------------~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~g 70 (319)
T 3pl2_A 5 LTSTHEVLAIGRLGVDIYPLQSGVGLADV--------------QSFGKYLGGSAANVSVAAARHGHNSALLSRVGNDPFG 70 (319)
T ss_dssp --CCCSEEEESCCEEEECBSSSSCCGGGC--------------CCBCCEEECHHHHHHHHHHHTTCCEEEEEEEESSHHH
T ss_pred cccCCCEEEEChhheeeecccCCCCcccc--------------ceeeecCCCcHHHHHHHHHHCCCceEEEEEeCCCHHH
Confidence 46778999999999999987666554211 1334567999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCC-CchhhhhhcccHHHHhhccCCcE
Q 017305 158 RFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSK-EPAFSWMNKLSAEVKTAIKHSKV 236 (374)
Q Consensus 158 ~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~-~~~~~~~~~l~~~~~~~l~~~~~ 236 (374)
+++++.|+++||+++++.+.++. +|+.+++.++++|++.+..+..... ..... .+.+. .+.+.++++
T Consensus 71 ~~i~~~l~~~gv~~~~v~~~~~~--------~t~~~~~~~~~~g~~~~~~~~~~~a~~~~~~-~~~~~---~~~~~~~~~ 138 (319)
T 3pl2_A 71 EYLLAELERLGVDNQYVATDQTF--------KTPVTFCEIFPPDDFPLYFYREPKAPDLNIE-SADVS---LDDVREADI 138 (319)
T ss_dssp HHHHHHHHHTTEECTTEEEESSS--------CCCEEEECCBTTTBCCEEEECCSCCGGGGCC-GGGSC---HHHHHHCSE
T ss_pred HHHHHHHHHcCCccccEEecCCC--------CceEEEEEEcCCCCeeEEEecCCCcccccCC-hhhCC---HHHhccCCE
Confidence 99999999999999999876654 3888888888788877654321110 00000 01111 345778999
Q ss_pred EEEecCCCCCC-CHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCCCCHH
Q 017305 237 LFCNGYGFDEL-SPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRNPI 315 (374)
Q Consensus 237 v~~~g~~~~~~-~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~~~~~ 315 (374)
+|++|+.+... ..+.+..+++.+++ +.++++|++.+.. +|.......+.+.++++++|++++|++|++.|+|..+++
T Consensus 139 ~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~v~~D~~~~~~-~~~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~~~~~ 216 (319)
T 3pl2_A 139 LWFTLTGFSEEPSRGTHREILTTRAN-RRHTIFDLDYRPM-FWESPEEATKQAEWALQHSTVAVGNKEECEIAVGETEPE 216 (319)
T ss_dssp EEEEGGGGSSTTHHHHHHHHHHHHTT-CSCEEEECCCCGG-GSSCHHHHHHHHHHHHTTCSEEEECHHHHHHHHSCCSHH
T ss_pred EEEecccccCchhHHHHHHHHHHHHH-CCcEEEeCCCChh-hcCCHHHHHHHHHHHHHhCCEEEcCHHHHHHHcCCCCHH
Confidence 99999876433 34556677776665 6678999998764 554444456778899999999999999999999999999
Q ss_pred HHHHHHHHcCCCccEEEEEcCCCceEEEeCCceEEecCceeeeecccchhhhhcCCC
Q 017305 316 TAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 316 ~~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
++++.|+++|+ +.||||+|++|++++++++.+++|+++++++||||+||+|.+|+
T Consensus 217 ~~~~~l~~~g~--~~vvvt~G~~G~~~~~~~~~~~~~~~~v~vvdttGAGDaf~a~~ 271 (319)
T 3pl2_A 217 RAGRALLERGV--ELAIVKQGPKGVMAMTKDETVEVPPFFVDVINGLGAGDAFGGAL 271 (319)
T ss_dssp HHHHHHHHTTC--SEEEEEEETTEEEEECSSCEEEECCCCCCCSCCTTHHHHHHHHH
T ss_pred HHHHHHHhcCC--CEEEEEECCCCeEEEECCceEEeCCcccCCCCCcCchHHHHHHH
Confidence 99999999887 78999999999999998889999999999999999999998775
No 4
>4e3a_A Sugar kinase protein; structural genomics, protein structure initiative, nysgrc, S kinase, PSI-biology; HET: ADN; 1.63A {Rhizobium etli} PDB: 3ubo_A*
Probab=100.00 E-value=4.8e-39 Score=306.24 Aligned_cols=270 Identities=15% Similarity=0.159 Sum_probs=213.6
Q ss_pred cCCCCccEEEECCeeEEEeecCCC-------CCCCchhhH-----HHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCC
Q 017305 77 SGVKSIDVATLGNLCVDIVLNVPQ-------LPPPSRDAR-----KAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLD 144 (374)
Q Consensus 77 ~~~~~~~vlviG~~~~D~i~~~~~-------~p~~~~~~~-----~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~ 144 (374)
..|++++|+++|++++|++..+++ +|+.+.... ......+. .....+||+++|+|+++++||.+
T Consensus 21 ~~m~~~~v~~iG~~~vD~~~~v~~~~l~~~~l~~g~~~li~~~~~~~l~~~~~----~~~~~~GG~~~N~A~~la~LG~~ 96 (352)
T 4e3a_A 21 QSMTRFDVLTVGNAIVDIISRCNDQFLIDNQITKAAMNLIDAERAELLYSRMG----PALEASGGSAGNTAAGVANLGGK 96 (352)
T ss_dssp --CCSEEEEEECCCEEEEEEECCHHHHHHTTCCTTSEEECCHHHHHHHHHHSC----SCEEEECCHHHHHHHHHHHHTCC
T ss_pred hHCCcccEEEECCceeeEEEecCHHHHHHcCCCCCcceEeCHHHHHHHHHHhh----hccEecCCHHHHHHHHHHHcCCC
Confidence 457889999999999999999876 565443211 00111111 23457899999999999999999
Q ss_pred eEEEEEecCchhHHHHHHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhccc
Q 017305 145 CVTIGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLS 224 (374)
Q Consensus 145 ~~~v~~vG~D~~G~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~ 224 (374)
+.++|.+|+|.+|+++++.|+++||+++++.+.++. +|+.++++++++|+|+++.+.+....... +.+.
T Consensus 97 ~~~ig~vG~D~~G~~l~~~l~~~GV~~~~~~~~~~~--------~T~~~~v~v~~~g~r~~~~~~ga~~~l~~---~~~~ 165 (352)
T 4e3a_A 97 AAYFGNVAADQLGDIFTHDIRAQGVHYQTKPKGAFP--------PTARSMIFVTEDGERSMNTYLGACVELGP---EDVE 165 (352)
T ss_dssp EEEECCCCSSHHHHHHHHHHHHTTCEECCCCCCSSS--------CCEEEEEEECTTSCEEEEEECGGGGGCCG---GGCC
T ss_pred eEEEEEECCChHHHHHHHHHHHcCCccceeeccCCC--------CCeEEEEEEcCCCceEEEeccChhhcCCh---hhCC
Confidence 999999999999999999999999999998765543 48999999999999987643321111000 1122
Q ss_pred HHHHhhccCCcEEEEecCCC-CCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhc--cCcEEecC
Q 017305 225 AEVKTAIKHSKVLFCNGYGF-DELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLS--TSDVLLLT 301 (374)
Q Consensus 225 ~~~~~~l~~~~~v~~~g~~~-~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~--~~Dil~~N 301 (374)
.+.+++++++|++||.+ .+.+.+.+.++++.+++.|.++++|++... + ....++.+.++++ ++|++++|
T Consensus 166 ---~~~~~~~~~v~~~G~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~--~---~~~~~~~l~~ll~~~~~dil~~N 237 (352)
T 4e3a_A 166 ---ADVVADAKVTYFEGYLWDPPRAKEAILDCARIAHQHGREMSMTLSDSF--C---VDRYRGEFLDLMRSGKVDIVFAN 237 (352)
T ss_dssp ---HHHHHTEEEEEEEGGGGSSSSHHHHHHHHHHHHHHTTCEEEEECCCHH--H---HHHHHHHHHHHHHTTSCCEEEEE
T ss_pred ---HHHHhhCCEEEEeeeecCCchHHHHHHHHHHHHHHcCCEEEEECCchh--h---HHHHHHHHHHHhcccCCcEEEeC
Confidence 24578999999999875 455678899999999999999999997421 0 1234566788998 89999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHcCCCccEEEEEcCCCceEEEeCCceEEecCceee-eecccchhhhhcCCC
Q 017305 302 SDEAESLTGLRNPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVL-QLQWVVVLVGMWQPW 372 (374)
Q Consensus 302 ~~Ea~~l~g~~~~~~~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~-vVDttGagdaf~~G~ 372 (374)
++|++.|+|.++++++++.|.+ ++ +.||||+|++|++++++++.+++|+++++ +|||||+||+|.+|+
T Consensus 238 ~~Ea~~l~g~~~~~~a~~~l~~-~~--~~vvvT~G~~G~~~~~~~~~~~~~~~~v~~vvDttGAGDaF~agf 306 (352)
T 4e3a_A 238 RQEALSLYQTDDFEEALNRIAA-DC--KIAAVTMSENGAVILKGRERYYVNAIRIREVVDTTGAGDLFASGF 306 (352)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHH-HS--SEEEEECGGGCEEEEETTEEEEECCCCCSCCSCCTTHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHhc-CC--CEEEEEECCCceEEEECCEEEEECCccCCCCcCCCChHHHHHHHH
Confidence 9999999999899999888876 45 78999999999999999999999999986 899999999998774
No 5
>3vas_A Putative adenosine kinase; ribokinase, enzyme, transferase; HET: ADN; 2.26A {Schistosoma mansoni} PDB: 4dc3_A* 3vaq_A* 3uq6_A* 3uq9_A*
Probab=100.00 E-value=1.1e-39 Score=312.85 Aligned_cols=276 Identities=11% Similarity=0.107 Sum_probs=211.7
Q ss_pred CcchhhhcccCCCCccEEEECCeeEEEeecCCC--------------------CCCCchhhHHHHhhhhhcCCCCCcccc
Q 017305 68 TAHDWKLRSSGVKSIDVATLGNLCVDIVLNVPQ--------------------LPPPSRDARKAYMDQLSASPPDKQYWE 127 (374)
Q Consensus 68 ~~~~~~~~~~~~~~~~vlviG~~~~D~i~~~~~--------------------~p~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (374)
++.......-.|++.+|+++|++++|+++.+++ +|..++.+. .......+
T Consensus 11 ~~~~~~~~~~~m~~~~v~~iG~~~vD~~~~v~~~~l~~~~l~~g~~~l~~~~~~P~~ge~~~----------~~~~~~~~ 80 (370)
T 3vas_A 11 SSGLVPRGSHDLSEGYVFGMGNPLLDIIVDADDFMYRKYNLKKDNIVLAEEKHMTIYDEIQK----------KKKLNYIA 80 (370)
T ss_dssp ----------CCCTTCEEEEECCEEEEEEECCTHHHHHTTCCTTEEEECCGGGTHHHHHHTT----------SSSCEEEE
T ss_pred ccCcccCCccccCCccEEEECCcceeEEEecCHHHHHHcCCCCCceEEccHHHHHHHHHHhh----------cCCeEEec
Confidence 333333444456678999999999999999984 555444321 11355678
Q ss_pred CCcHHHHHHHHHHc---CCCeEEEEEecCchhHHHHHHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCcc
Q 017305 128 AGGNCNVAIAAARL---GLDCVTIGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHG 204 (374)
Q Consensus 128 GG~a~NvA~~larL---G~~~~~v~~vG~D~~G~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~ 204 (374)
||+++|+|+++++| |.++.++|.||+|.+|+++++.|+++||+++++...++. +|+.++++++ +|+|+
T Consensus 81 GG~~~N~A~~la~L~~~G~~~~~ig~vG~D~~G~~~~~~L~~~GV~~~~~~~~~~~--------~Tg~~~i~v~-~g~rt 151 (370)
T 3vas_A 81 GGATLNTVKMIQWIIQKPFVCSYVGCIGADIQGKYIKNDCSALDLVTEFQIAEEPL--------MTGKVAVLVS-EKLRS 151 (370)
T ss_dssp ECHHHHHHHHHHHHHCCTTCEEEEEEECSSHHHHHHHHHHHHTTCEECCEECCTTC--------CEEEEEEEEC-SSCEE
T ss_pred CCHHHHHHHHHHHhcCCCCcEEEEEEEcCChhHHHHHHHHHHcCCcccccccCCCC--------CceEEEEEEe-CCcee
Confidence 99999999999999 999999999999999999999999999999998764443 4999999998 89998
Q ss_pred ccccCCCCCCchhhhhhcccHHHHhhccCCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHH
Q 017305 205 FCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEE 284 (374)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~ 284 (374)
++...+.......++++. ..+.+.+.+++++|++||.+. .+.+.+.++++.+++.|+++++|++... | ....
T Consensus 152 ~~~~~ga~~~l~~~~~~~--~~~~~~~~~~~~v~~~g~~~~-~~~~~~~~~~~~a~~~g~~v~ld~~~~~---~--~~~~ 223 (370)
T 3vas_A 152 MVTYLGAACDLSLAHIEQ--PHVWSLVEKAQVYYIAGFVIN-TCYEGMLKIAKHSLENEKLFCFNLSAPF---L--SQFN 223 (370)
T ss_dssp EEEEEEGGGGCCHHHHTS--HHHHHHHHHCSEEEEEGGGHH-HHHHHHHHHHHHHHHTTCEEEEECCCHH---H--HHHC
T ss_pred EEEccchhhhCCHHHcCc--hhhHHHHhhCCEEEEEeeecc-CCHHHHHHHHHHHHHcCCEEEEECCcHH---H--HHHH
Confidence 875432111111111111 123456788999999998653 5578899999999999999999997431 1 1223
Q ss_pred HHHHHhhhccCcEEecCHHHHHHhhCC-----CCHHHHHHHHHHc-------CCCccEEEEEcCCCceEEEe--CCceEE
Q 017305 285 QRALSYFLSTSDVLLLTSDEAESLTGL-----RNPITAGQELLRK-------GLRTKWVVVKMGPRGSILVT--KSSISC 350 (374)
Q Consensus 285 ~~~~~~ll~~~Dil~~N~~Ea~~l~g~-----~~~~~~~~~l~~~-------g~~~~~vvvT~G~~Ga~~~~--~~~~~~ 350 (374)
++.+.++++++|++++|++|++.|+|. ++++++++.|.++ ++ +.||||+|++|+++++ +++.++
T Consensus 224 ~~~l~~ll~~~dil~~N~~Ea~~l~g~~~~~~~~~~~~~~~l~~~~~~~~~~g~--~~VvvT~G~~Ga~~~~~~~~~~~~ 301 (370)
T 3vas_A 224 TKEVDEMISYSNIVFGNESEAEAYGEVHGLLEDTVHATARYIADLPFADGKKRK--RLVIITRGKNPLLYTDSSDSEIHQ 301 (370)
T ss_dssp HHHHHHHHTTCSEEEEEHHHHHHHHHHTTCCSSHHHHHHHHHHHSCCTTCCCCC--CEEEEEETTEEEEEEETTCSSCEE
T ss_pred HHHHHHHHhhCCEEEcCHHHHHHHhcccCCCccCHHHHHHHHHhhcccccccCC--CEEEEecCCCceEEEEcCCCeEEE
Confidence 466788999999999999999999875 5678899999885 65 8899999999999999 788899
Q ss_pred ecCcee---eeecccchhhhhcCCC
Q 017305 351 APAFKV---LQLQWVVVLVGMWQPW 372 (374)
Q Consensus 351 ~pa~~v---~vVDttGagdaf~~G~ 372 (374)
+|++++ ++||||||||+|.+|+
T Consensus 302 ~~~~~v~~~~vvDttGAGDaF~ag~ 326 (370)
T 3vas_A 302 FMVEQFKDDQIIDTNGAGDAFAAGF 326 (370)
T ss_dssp ECCCCCCTTTCSCCTTHHHHHHHHH
T ss_pred EecccccCCCcCCCCChHHHHHHHH
Confidence 999987 8999999999998775
No 6
>1rkd_A Ribokinase; carbohydrate kinase, ribose, nucleotide binding, transferase; HET: RIB ADP; 1.84A {Escherichia coli} SCOP: c.72.1.1 PDB: 1gqt_A* 1rka_A 1rk2_A* 1rks_A*
Probab=100.00 E-value=1.3e-38 Score=297.93 Aligned_cols=254 Identities=22% Similarity=0.290 Sum_probs=205.0
Q ss_pred CCccEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHH
Q 017305 80 KSIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRF 159 (374)
Q Consensus 80 ~~~~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~ 159 (374)
++++|+|+|++++|++..++++|..++.... ......+||+++|+|+++++||.++.++|.+|+|.+|++
T Consensus 3 ~~~~v~viG~~~iD~~~~~~~~p~~g~~~~~----------~~~~~~~GG~~~N~A~~la~lG~~~~~~~~vG~D~~g~~ 72 (309)
T 1rkd_A 3 NAGSLVVLGSINADHILNLQSFPTPGETVTG----------NHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGES 72 (309)
T ss_dssp -CCEEEEECCCEEEEEEECSSCCCTTCCCCC----------CCEEEEEECHHHHHHHHHHHHTCEEEEEEEEESSTTHHH
T ss_pred CCCeEEEECcceEeEEEecCCCCCCCCeeec----------CceeecCCCHHHHHHHHHHhCCCceEEEEEECCCHHHHH
Confidence 4558999999999999999999887764311 123456799999999999999999999999999999999
Q ss_pred HHHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcccHHHHhhccCCcEEEE
Q 017305 160 LLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFC 239 (374)
Q Consensus 160 i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~~ 239 (374)
+++.|+++||+++++.+.++. +|+.++++++++|+++++...+.......+.+ +...+.+++++++|+
T Consensus 73 i~~~L~~~gv~~~~v~~~~~~--------~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~v~~ 140 (309)
T 1rkd_A 73 VRQQLATDNIDITPVSVIKGE--------STGVALIFVNGEGENVIGIHAGANAALSPALV----EAQRERIANASALLM 140 (309)
T ss_dssp HHHHHHTTTEECTTEEEETTC--------CCEEEEEEECTTSCEEEEEECGGGGGCCHHHH----HTTHHHHHHCSEEEE
T ss_pred HHHHHHHcCCCccceEecCCC--------CCceEEEEECCCCCeEEEEeCCchhcCCHHHH----HHHHHhcccCCEEEE
Confidence 999999999999998876554 38999999998899887643221100000111 111235678999999
Q ss_pred ecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCCC-----CH
Q 017305 240 NGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLR-----NP 314 (374)
Q Consensus 240 ~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~~-----~~ 314 (374)
++ ..+.+.+..+++.+++.|.++++|+++... +. .++++++|++++|++|++.|+|.. +.
T Consensus 141 ~~----~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~-~~----------~~ll~~~dil~~N~~E~~~l~g~~~~~~~~~ 205 (309)
T 1rkd_A 141 QL----ESPLESVMAAAKIAHQNKTIVALNPAPARE-LP----------DELLALVDIITPNETEAEKLTGIRVENDEDA 205 (309)
T ss_dssp CS----SSCHHHHHHHHHHHHHTTCEEEECCCSCCC-CC----------HHHHTTCSEECCCHHHHHHHHSCCCSSHHHH
T ss_pred eC----CCCHHHHHHHHHHHHHcCCEEEEECCcccc-ch----------HHHHhhCCEEEcCHHHHHHHhCCCCCCHHHH
Confidence 74 456788889999999999999999997632 21 468899999999999999999863 45
Q ss_pred HHHHHHHHHcCCCccEEEEEcCCCceEEEeCCceEEecCceeeeecccchhhhhcCCC
Q 017305 315 ITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 315 ~~~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
+++++.|+++|+ +.||||+|++|++++++++.+++|+++++++||||+||+|.+|+
T Consensus 206 ~~~~~~l~~~g~--~~vvvt~G~~G~~~~~~~~~~~~~~~~v~~vdt~GAGD~f~a~~ 261 (309)
T 1rkd_A 206 AKAAQVLHEKGI--RTVLITLGSRGVWASVNGEGQRVPGFRVQAVDTIAAGDTFNGAL 261 (309)
T ss_dssp HHHHHHHHHTTC--SEEEEECGGGCEEEEETTEEEEECCCCCCCSCCTTHHHHHHHHH
T ss_pred HHHHHHHHHhCC--CEEEEEECCCcEEEEeCCceEEcCCCCCCcCCCCChHHHHHHHH
Confidence 678888998877 78999999999999988888999999999999999999998764
No 7
>4du5_A PFKB; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.70A {Polaromonas SP}
Probab=100.00 E-value=3.6e-38 Score=298.49 Aligned_cols=263 Identities=22% Similarity=0.237 Sum_probs=201.9
Q ss_pred CCccEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHH
Q 017305 80 KSIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRF 159 (374)
Q Consensus 80 ~~~~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~ 159 (374)
++++|+|+|++++|++...+ ++... .. .....+||+++|+|+++++||.++.++|.+|+|.+|++
T Consensus 25 ~~~~vlviG~~~iD~~~~~~-----g~~~~---~~-------~~~~~~GG~~~NvA~~la~LG~~~~~ig~vG~D~~G~~ 89 (336)
T 4du5_A 25 SALDVITFGEAMMLLVADRP-----GPLEH---AE-------AFHKRTAGAETNVAIGLARLGLKVGWASRLGTDSMGRY 89 (336)
T ss_dssp -CEEEEEECCCEEEEEESSS-----SCGGG---CC-------EEEEEEECHHHHHHHHHHHTTCCEEEEEEECSSHHHHH
T ss_pred CCCCEEEEChhhhhccCCCC-----Cccch---hh-------heeecCCCHHHHHHHHHHhCCCcEEEEEEeCCCHHHHH
Confidence 44789999999999997632 22211 11 23456799999999999999999999999999999999
Q ss_pred HHHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCcc-ccccCCCCCCchhhhhhcccHHHHhhccCCcEEE
Q 017305 160 LLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHG-FCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLF 238 (374)
Q Consensus 160 i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~-~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~ 238 (374)
+++.|+++||+++++.+.++. +|+.+++.++++|++. +.+........... .+.+. .+.+++++++|
T Consensus 90 i~~~L~~~GV~~~~v~~~~~~--------~T~~~~~~~~~~g~~~~~~~~~~~~a~~~l~-~~~~~---~~~l~~~~~v~ 157 (336)
T 4du5_A 90 LLAAMAAEGIDCSHVVCDATQ--------KTGFQFKGKVTDGSDPPVEYHRKGSAASHMG-VADID---EAWLLSARHLH 157 (336)
T ss_dssp HHHHHHTTTCEEEEEEECTTS--------CCCEEEECCCSCC--CCEEEECTTCTGGGCC-GGGCC---HHHHTTEEEEE
T ss_pred HHHHHHHcCCCcceEEEcCCC--------CcEEEEEEEcCCCCcceEEEECCCChhHhCC-hhhCC---HhHhccCCEEE
Confidence 999999999999999877664 3888988888888544 32211111011000 01121 24578899999
Q ss_pred EecCCC--CCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCCCCHHH
Q 017305 239 CNGYGF--DELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRNPIT 316 (374)
Q Consensus 239 ~~g~~~--~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~~~~~~ 316 (374)
++|+.. .+...+.+.++++.+++.|+++++|++.+.. +|.......+.+.++++++|++++|++|++.|+|.+++++
T Consensus 158 ~~g~~~~~~~~~~~~~~~~~~~a~~~g~~v~~Dp~~~~~-~~~~~~~~~~~~~~ll~~~dil~pN~~Ea~~l~g~~~~~~ 236 (336)
T 4du5_A 158 ATGVFPAISATTLPAARKTMDLMRAAGRSVSFDPNLRPT-LWATPELMRDAINDLATRADWVLPGMEEGRFLTGETTPEG 236 (336)
T ss_dssp EESSGGGSCTTHHHHHHHHHHHHHHTTCEEEEECCCCGG-GSSSHHHHHHHHHHHHTTCSEECCBHHHHHHHHCCCSHHH
T ss_pred EcCchhhCChHHHHHHHHHHHHHHHCCCEEEEeCcCCch-hcCChHHHHHHHHHHHHhCCEEECCHHHHHHHhCCCCHHH
Confidence 999764 4445677889999999999999999997654 5544334466788899999999999999999999999999
Q ss_pred HHHHHHHcCCCccEEEEEcCCCceEEEeCCceEEecCceee-eecccchhhhhcCCC
Q 017305 317 AGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVL-QLQWVVVLVGMWQPW 372 (374)
Q Consensus 317 ~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~-vVDttGagdaf~~G~ 372 (374)
+++.|+++|+ +.||||+|++|++++++++.+++|+++++ ++||||+||+|.+|+
T Consensus 237 ~~~~l~~~g~--~~vvvt~G~~G~~~~~~~~~~~~~~~~v~~vvdttGAGDaf~a~~ 291 (336)
T 4du5_A 237 VARFYRQLGA--KLVVVKLGAEGAYFDGEAGSGRVAGFPVAEVVDTVGAGDGFAVGV 291 (336)
T ss_dssp HHHHHHHTTC--SEEEEECGGGCEEEEETTEEEEECCCCC-------CHHHHHHHHH
T ss_pred HHHHHHhcCC--CEEEEEecCCceEEEECCeEEEeCCccCCCCCCCccchHHHHHHH
Confidence 9999999987 88999999999999999999999999997 999999999998764
No 8
>3iq0_A Putative ribokinase II; transferase,kinase,SAD,ribose, D-ribose metabolic process, PFKB family,11206G, PSI-II, NYSGXRC, structural genomics; HET: ATP; 1.79A {Escherichia coli O6} SCOP: c.72.1.0 PDB: 3k9e_A
Probab=100.00 E-value=5.5e-39 Score=303.34 Aligned_cols=261 Identities=21% Similarity=0.263 Sum_probs=204.6
Q ss_pred CCccEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHH
Q 017305 80 KSIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRF 159 (374)
Q Consensus 80 ~~~~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~ 159 (374)
+|++|+|+|++++|++...+ ..+.... .. .....+||+++|+|+++++||.++.++|.+|+|.+|++
T Consensus 2 ~m~~i~viG~~~~D~~~~~~---~~~~~~~-----~~-----~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~g~~ 68 (330)
T 3iq0_A 2 SLSKVFTIGEILVEIMASKI---GQPFDQP-----GI-----WNGPYPSGAPAIFIDQVTRLGVPCGIISCVGNDGFGDI 68 (330)
T ss_dssp --CEEEEESCCEEEEEEEEE---TCCSSSC-----EE-----EEEEEEECHHHHHHHHHHHTTCCEEEEEEEESSHHHHH
T ss_pred CCCCEEEEcceeEEEeccCC---CCCcccc-----cc-----ccCcCCCCHHHHHHHHHHHCCCcEEEEEEeCCChHHHH
Confidence 45689999999999997522 1111100 00 01235699999999999999999999999999999999
Q ss_pred HHHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCcccc-ccCCCCCCchhhhh--hcccHHHHhhccCCcE
Q 017305 160 LLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFC-SRADFSKEPAFSWM--NKLSAEVKTAIKHSKV 236 (374)
Q Consensus 160 i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~-~~~~~~~~~~~~~~--~~l~~~~~~~l~~~~~ 236 (374)
+++.|+++||+++++.+.++. +|+.+++.++++|+|.+. ...+ .....+ +.+. ...++++++
T Consensus 69 i~~~l~~~gv~~~~v~~~~~~--------~T~~~~i~~~~~g~~~~~~~~~~----~a~~~~~~~~~~---~~~~~~~~~ 133 (330)
T 3iq0_A 69 NIHRLAADGVDIRGISVLPLE--------ATGSAFVTYHNSGDRDFIFNIKN----AACGKLSAQHVD---ENILKDCTH 133 (330)
T ss_dssp HHHHHHHTTCBCTTEEEETTS--------CCEEEEEEECC---CEEEEECTT----SGGGGCCGGGCC---GGGGTTEEE
T ss_pred HHHHHHHcCCCeeeEEEcCCC--------CceEEEEEECCCCCeeEEEeccC----ChhhhCCHhhCC---HhHhccCCE
Confidence 999999999999999876654 388999999988998443 2221 111111 1111 235788999
Q ss_pred EEEecCCC-CCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCCCCHH
Q 017305 237 LFCNGYGF-DELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRNPI 315 (374)
Q Consensus 237 v~~~g~~~-~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~~~~~ 315 (374)
+|++|+.+ .+...+.+.++++.+++.|+++++|++++.. +|. .+..++.+.++++++|++++|++|++.|+|..+++
T Consensus 134 v~~sg~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~-~~~-~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~~~~~ 211 (330)
T 3iq0_A 134 FHIMGSSLFSFHMVDAVKKAVTIVKANGGVISFDPNIRKE-MLD-IPEMRDALHFVLELTDIYMPSEGEVLLLSPHSTPE 211 (330)
T ss_dssp EEEEGGGCSSHHHHHHHHHHHHHHHHTTCEEEEECCCCGG-GGG-SHHHHHHHHHHHHTCSEECCBGGGTTTTCSCSSHH
T ss_pred EEEechhhcCcchHHHHHHHHHHHHHcCCEEEEcCCCCcc-ccC-cHHHHHHHHHHHhhCCEEecCHHHHHHHhCCCCHH
Confidence 99999865 2333467889999999999999999998764 443 23456778889999999999999999999998999
Q ss_pred HHHHHHHHcCCCccEEEEEcCCCceEEEeCCceEEecCceeeeecccchhhhhcCCC
Q 017305 316 TAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 316 ~~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
++++.|++.|+ +.||||+|++|++++++++.+++|+++++++||||+||+|.+|+
T Consensus 212 ~~~~~l~~~g~--~~vvvT~G~~G~~~~~~~~~~~~~~~~v~vvdttGAGDaf~a~~ 266 (330)
T 3iq0_A 212 RAIAGFLEEGV--KEVIVKRGNQGASYYSANEQFHVESYPVEEVDPTGAGDCFGGAW 266 (330)
T ss_dssp HHHHHHHHHTC--SEEEEECGGGCEEEECSSCEEEECCCCCCCSCCTTHHHHHHHHH
T ss_pred HHHHHHHHcCC--CEEEEEeCCCceEEEECCceEEecCCCCccCCCCChHHHHHHHH
Confidence 99999999887 78999999999999998899999999999999999999998775
No 9
>4e69_A 2-dehydro-3-deoxygluconokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Oceanicola granulosus} PDB: 4ebu_A* 4eum_A*
Probab=100.00 E-value=2.2e-38 Score=298.93 Aligned_cols=259 Identities=19% Similarity=0.220 Sum_probs=210.1
Q ss_pred CCCccEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHc--CCCeEEEEEecCchh
Q 017305 79 VKSIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARL--GLDCVTIGHVGNEIY 156 (374)
Q Consensus 79 ~~~~~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larL--G~~~~~v~~vG~D~~ 156 (374)
+.|++|+|+|++++|++.. | ++. .....+||+++|+|+++++| |.++.++|.+|+|.+
T Consensus 21 ~~m~~i~viG~~~iD~~~~----~--~~~--------------~~~~~~GG~~~NvA~~la~Lg~G~~~~~ig~vG~D~~ 80 (328)
T 4e69_A 21 QSMMHILSIGECMAELAPA----D--LPG--------------TYRLGFAGDTFNTAWYLARLRPESRISYFSAIGDDAL 80 (328)
T ss_dssp BSSCEEEEESCCEEEEEEC----S--STT--------------EEEEEEECHHHHHHHHHHHHCTTSEEEEECEECSSHH
T ss_pred ccCCcEEEecCcEEEEecC----C--CCC--------------ceEEecCCHHHHHHHHHHhcCCCCcEEEEEeeCCCHH
Confidence 3456899999999999975 1 110 12345799999999999999 899999999999999
Q ss_pred HHHHHHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcccHHHHhhccCCcE
Q 017305 157 GRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKV 236 (374)
Q Consensus 157 G~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 236 (374)
|+++++.|+++||+++++.+.++. +|+.+++.++ +|+|+++...+... ....++ ..+...+.++++++
T Consensus 81 G~~l~~~L~~~GV~~~~v~~~~~~--------~T~~~~v~~~-~g~r~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~ 148 (328)
T 4e69_A 81 SQQMRAAMSAAGIDGGGLRVIPGR--------TVGLYLITLE-QGERSFAYWRGQSA--ARELAG-DADALAAAMARADV 148 (328)
T ss_dssp HHHHHHHHHHTTEECTTCEECTTC--------CCEEEEEEEE-TTEEEEEEECTTCG--GGGTTS-CHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHcCCccceEEEcCCC--------CCeEEEEEec-CCceEEEEeCCCCH--HHhhcC-ccccchHHhcCCCE
Confidence 999999999999999998877654 3889999998 89998765432211 101111 11222366889999
Q ss_pred EEEecCCC---CCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCCCC
Q 017305 237 LFCNGYGF---DELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRN 313 (374)
Q Consensus 237 v~~~g~~~---~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~~~ 313 (374)
+|++|+.+ .+.+.+.+.++++.+++.++++++|++.+.. +|.......+.+.++++++|++++|++|++.|+|.++
T Consensus 149 v~~~g~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~Dp~~~~~-~~~~~~~~~~~~~~ll~~~dil~~N~~E~~~l~g~~~ 227 (328)
T 4e69_A 149 VYFSGITLAILDQCGRATLLRALAQARATGRTIAFDPNLRPR-LWAGTGEMTETIMQGAAVSDIALPSFEDEAAWFGDAG 227 (328)
T ss_dssp EEEEHHHHHTSCHHHHHHHHHHHHHHHHTTCEEEEECCCCGG-GCSCHHHHHHHHHHHHTTCSEECCBHHHHHHHHTCSS
T ss_pred EEECCchhhccCchHHHHHHHHHHHHHhCCCEEEEeCCCChh-hcCCHHHHHHHHHHHHHhCCEEeCCHHHHHHHcCCCC
Confidence 99998754 2334567888999999999999999987654 5544455667788999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCccEEEEEcCCCceEEEeCCceEEecCce-eeeecccchhhhhcCCC
Q 017305 314 PITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFK-VLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 314 ~~~~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~-v~vVDttGagdaf~~G~ 372 (374)
++++++.|.+.|+ +.||||+|++|++++++++.+++|+++ ++++||||+||+|.+|+
T Consensus 228 ~~~~~~~l~~~g~--~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGDaf~a~~ 285 (328)
T 4e69_A 228 PDATADRYARAGV--RSVVVKNGPHAVHFLQDGRRGRVPVPPVAQVVDTTAAGDSFNAGL 285 (328)
T ss_dssp HHHHHHHHHTTTC--SEEEEBCTTSCEEEEETTEEEEECCCCCCSCCCCTTHHHHHHHHH
T ss_pred HHHHHHHHHhcCC--CEEEEEeCCCCeEEEeCCceEEecCCCCCCccCCCChhHHHHHHH
Confidence 9999999999887 889999999999999999999999986 79999999999998764
No 10
>2fv7_A Ribokinase; structural genomics, structural genomics consort transferase; HET: ADP; 2.10A {Homo sapiens} SCOP: c.72.1.1
Probab=100.00 E-value=1.4e-38 Score=300.68 Aligned_cols=255 Identities=23% Similarity=0.295 Sum_probs=204.3
Q ss_pred CCccEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHH
Q 017305 80 KSIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRF 159 (374)
Q Consensus 80 ~~~~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~ 159 (374)
++++|+|+|++++|++..++++|.+++.... . .....+||+++|+|+++++||.++.++|.+|+|.+|++
T Consensus 23 ~~~~vlviG~~~iD~~~~~~~~p~~g~~~~~---~-------~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~G~~ 92 (331)
T 2fv7_A 23 EVAAVVVVGSCMTDLVSLTSRLPKTGETIHG---H-------KFFIGFGGKGANQCVQAARLGAMTSMVCKVGKDSFGND 92 (331)
T ss_dssp -CCSEEEECCCEEEEEEECSSCCCTTCCCCC---S-------EEEEEEECHHHHHHHHHHHTTCCEEEEEEEESSHHHHH
T ss_pred ccCCEEEECcccEEEEEecCCCCCCCceEec---C-------ceEECcCCHHHHHHHHHHHCCCCeEEEEEECCChhHHH
Confidence 4568999999999999999999887764311 1 23456799999999999999999999999999999999
Q ss_pred HHHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcccHHHHhhccCCcEEEE
Q 017305 160 LLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFC 239 (374)
Q Consensus 160 i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~~ 239 (374)
+++.|+++||+++++.+.++. +|+.++++++++|+|+++...+.......+. + +...+.+++++++++
T Consensus 93 l~~~L~~~Gv~~~~v~~~~~~--------~T~~~~v~~~~~g~~~~~~~~ga~~~l~~~~---~-~~~~~~l~~~~~v~~ 160 (331)
T 2fv7_A 93 YIENLKQNDISTEFTYQTKDA--------ATGTASIIVNNEGQNIIVIVAGANLLLNTED---L-RAAANVISRAKVMVC 160 (331)
T ss_dssp HHHHHHTTTEECTTEEEESSS--------CCEEEEEEECTTSCEEEEEECGGGGGCCHHH---H-HHTHHHHHHCSEEEE
T ss_pred HHHHHHHcCCcceeeEecCCC--------CCceEEEEECCCCCeEEEecCCccccCCHHH---H-HHHHHhhccCCEEEE
Confidence 999999999999998876554 4899999999889988765432110000001 1 111234678999999
Q ss_pred ecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCCC-----CH
Q 017305 240 NGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLR-----NP 314 (374)
Q Consensus 240 ~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~~-----~~ 314 (374)
++ ..+.+.+..+++.+++.++++++|+++....+ ..++++++|++++|++|++.|+|.. ++
T Consensus 161 ~~----~~~~~~~~~~~~~a~~~g~~v~~Dp~~~~~~~----------~~~ll~~~dil~~N~~Ea~~l~g~~~~~~~~~ 226 (331)
T 2fv7_A 161 QL----EITPATSLEALTMARRSGVKTLFNPAPAIADL----------DPQFYTLSDVFCCNESEAEILTGLTVGSAADA 226 (331)
T ss_dssp CS----SSCHHHHHHHHHHHHHTTCEEEECCCSCCTTC----------CTHHHHTCSEEEEEHHHHHHHHSSCCCSHHHH
T ss_pred ec----CCCHHHHHHHHHHHHHcCCEEEEeCCcccccc----------hHHHHhcCCEEEeCHHHHHHHhCCCCCChhHH
Confidence 74 45678888999999999999999999763222 1367899999999999999999863 46
Q ss_pred HHHHHHHHHcCCCccEEEEEcCCCceEEEeCC--ceEEecCceeeeecccchhhhhcCCC
Q 017305 315 ITAGQELLRKGLRTKWVVVKMGPRGSILVTKS--SISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 315 ~~~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~--~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
+++++.|+++|+ +.||||+|++|+++++++ +.+++|+++++++||||+||+|.+|+
T Consensus 227 ~~~~~~l~~~g~--~~VvvT~G~~G~~~~~~~~~~~~~~~~~~v~vvdttGAGDaf~a~~ 284 (331)
T 2fv7_A 227 GEAALVLLKRGC--QVVIITLGAEGCVVLSQTEPEPKHIPTEKVKAVDTTGAGDSFVGAL 284 (331)
T ss_dssp HHHHHHHHTTTC--SEEEEECGGGCEEEEESSCCSCEEECCCCCCCSCCTTHHHHHHHHH
T ss_pred HHHHHHHHHcCC--CEEEEEECCCceEEEECCCCceeEecCCCCccCCCCCchHHHHHHH
Confidence 678888998877 789999999999998877 78899999999999999999998764
No 11
>3hj6_A Fructokinase, FRK; fructose, transferase, carbohydrate ME; 2.80A {Halothermothrix orenii}
Probab=100.00 E-value=1.5e-39 Score=306.79 Aligned_cols=262 Identities=23% Similarity=0.343 Sum_probs=202.2
Q ss_pred CCCccEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHH
Q 017305 79 VKSIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGR 158 (374)
Q Consensus 79 ~~~~~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~ 158 (374)
+++++|+|+|++++|++...+++|.... ......+||+++|+|+++++||.++.++|.+|+|.+|+
T Consensus 19 ~~~~~v~viG~~~~D~~~~~~~~p~~~~--------------~~~~~~~GG~~~NvA~~la~LG~~~~~ig~vG~D~~g~ 84 (327)
T 3hj6_A 19 KGDLDVVSLGEILVDMISTEEVNSLSQS--------------REYTRHFGGSPANIAVNLSRLGKKVALISRLGADAFGN 84 (327)
T ss_dssp ---CCEEEESCCEEEEECCCCCSSGGGC--------------CEEEEEEECHHHHHHHHHHHTTCCEEEECEEESSHHHH
T ss_pred cCCCCEEEEccceEEEeccCCCCCcccc--------------ceeeeecCcHHHHHHHHHHHcCCcEEEEEEeCCCHHHH
Confidence 3567899999999999988777664311 12345679999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcccHHHHhhccCCcEEE
Q 017305 159 FLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLF 238 (374)
Q Consensus 159 ~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~ 238 (374)
++++.|+++||+++++.+.++. +|+.+++..+ +|++.+....+. . ..+. ..+...+.+++++++|
T Consensus 85 ~i~~~l~~~gv~~~~v~~~~~~--------~t~~~~v~~~-~g~~~~~~~~~a----~-~~~~-~~~~~~~~~~~~~~v~ 149 (327)
T 3hj6_A 85 YLLDVLKGEQIITDGIQQDKER--------RTTIVYVSKS-TRTPDWLPYREA----D-MYLQ-EDDIIFELIKRSKVFH 149 (327)
T ss_dssp HHHHHHHHTTCBCTTCEEESSS--------CCCEEEECCC-TTCCCEEEECSG----G-GGCC-SCCCHHHHHC--CEEE
T ss_pred HHHHHHHHcCCCcccEEEcCCC--------CceEEEEEec-CCCccEEEecCh----h-hhCC-hhhcCHhHhccCCEEE
Confidence 9999999999999999866654 3777776655 688876543221 1 1110 1111234578899999
Q ss_pred EecCCC-CCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCCCCHHHH
Q 017305 239 CNGYGF-DELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRNPITA 317 (374)
Q Consensus 239 ~~g~~~-~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~~~~~~~ 317 (374)
++++.+ .+.+.+.+.++++.++++|+++++|++++.. +|....+..+.+.++++++|++++|++|++.|+|..+.+++
T Consensus 150 ~~g~~l~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~-~~~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~~~~~~~ 228 (327)
T 3hj6_A 150 LSTFILSRKPARDTAIKAFNYAREQGKIVCFDPCYRKV-LWPEGDDGAGVVEEIISRADFVKPSLDDARHLFGPDSPENY 228 (327)
T ss_dssp EESHHHHSHHHHHHHHHHHHHHHHTTCEEEEECCCCGG-GSCSSSCSHHHHHHHHTTCSEECCBHHHHHHHHTTSCSSGG
T ss_pred ECchHhcCchhHHHHHHHHHHHHHCCCEEEEECCCchh-hcCCHHHHHHHHHHHHhhCCEEecCHHHHHHHhCCCCHHHH
Confidence 998743 2335678889999999999999999998764 55544445677889999999999999999999998888888
Q ss_pred HHHHHHcCCCccEEEEEcCCCceEEEeCCceEEecCceeeeecccchhhhhcCCC
Q 017305 318 GQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 318 ~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
++.|++.|+ +.||||+|++|++++++++.+++|+++++++||||+||+|.+|+
T Consensus 229 ~~~l~~~g~--~~vvvt~G~~G~~~~~~~~~~~~~~~~v~vvdttGAGDaf~ag~ 281 (327)
T 3hj6_A 229 VKRYLELGV--KAVILTLGEEGVIASDGEEIIRIPAFSEDAVDVTGAGDAFWSGF 281 (327)
T ss_dssp GGGGTTTTC--SEEEEECSTTCEEEECSSCEEESCSSTTC-----CCHHHHHHHH
T ss_pred HHHHHhCCC--CEEEEEECCCceEEEeCCeeEEcCCcccccCCCcChhHHHHHHH
Confidence 888888877 78999999999999998889999999999999999999998764
No 12
>3lhx_A Ketodeoxygluconokinase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.87A {Shigella flexneri}
Probab=100.00 E-value=2.2e-38 Score=297.84 Aligned_cols=256 Identities=19% Similarity=0.233 Sum_probs=203.7
Q ss_pred ccEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcC----CCeEEEEEecCchhH
Q 017305 82 IDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLG----LDCVTIGHVGNEIYG 157 (374)
Q Consensus 82 ~~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG----~~~~~v~~vG~D~~G 157 (374)
++|+|+|++++|++... + .....+||+++|+|+++++|| .++.++|.+|+|.+|
T Consensus 5 ~~i~viG~~~~D~~~~~------~----------------~~~~~~GG~~~NvA~~la~LG~~~~~~~~~ig~vG~D~~G 62 (319)
T 3lhx_A 5 KKIAVIGECMIELSEKG------A----------------DVKRGFGGDTLNTSVYIARQVDPAALTVHYVTALGTDSFS 62 (319)
T ss_dssp EEEEEESCCEEEEEC-------------------------CCEEEEECHHHHHHHHHHTTSCTTTEEEEEECEECSSHHH
T ss_pred CceeeechhhhhhccCC------C----------------ceEEecCChHHHHHHHHHHcCCCCCCcEEEEEEeCCCHHH
Confidence 58999999999998532 1 123457999999999999999 899999999999999
Q ss_pred HHHHHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhc-ccHHHHhhccCCcE
Q 017305 158 RFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNK-LSAEVKTAIKHSKV 236 (374)
Q Consensus 158 ~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~-l~~~~~~~l~~~~~ 236 (374)
+++++.|+++||+++++.+.++. +|+.+++.++++|+|+++...+.. ....++.. ..+...+.++++++
T Consensus 63 ~~l~~~L~~~GV~~~~v~~~~~~--------~T~~~~i~~~~~g~r~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~ 132 (319)
T 3lhx_A 63 QQMLDAWHGENVDTSLTQRMENR--------LPGLYYIETDSTGERTFYYWRNEA--AAKFWLASEQSAAICEELANFDY 132 (319)
T ss_dssp HHHHHHHHTTTEECTTCEECTTC--------CCCEEEEEC----CCEEEEECTTC--GGGGTTSSSSHHHHHHHHTTCSE
T ss_pred HHHHHHHHHcCCCcceEEEcCCC--------CceEEEEEeCCCCCeeEEEecCCC--HHHhccCccchhhHHHHhcCCCE
Confidence 99999999999999999877654 388899999888999877543211 01111111 11334567889999
Q ss_pred EEEecCCCC---CCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCCCC
Q 017305 237 LFCNGYGFD---ELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRN 313 (374)
Q Consensus 237 v~~~g~~~~---~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~~~ 313 (374)
+|++|+.+. +.+.+.+.++++.+++.|+++++|++.+.. +|.......+.+.++++++|++++|++|++.|+|.++
T Consensus 133 v~~~g~~~~~l~~~~~~~~~~~~~~a~~~g~~v~~Dp~~~~~-~~~~~~~~~~~~~~ll~~~di~~~n~~E~~~l~g~~~ 211 (319)
T 3lhx_A 133 LYLSGISLAILSPTSREKLLSLLRECRAKGGKVIFDNNYRPR-LWASKEETQQVYQQMLECTDIAFLTLDDEDALWGQQP 211 (319)
T ss_dssp EEEEHHHHHTSCHHHHHHHHHHHHHHHHTTCEEEEECCCCGG-GSSCHHHHHHHHHHHHTTCSEEEEEHHHHHHHHCCCC
T ss_pred EEEcCchhhhcCchhHHHHHHHHHHHHhcCCEEEEeCcCCcc-cccCHHHHHHHHHHHHhhCCcccCCHHHHHHHhCCCC
Confidence 999987543 233477889999999999999999997653 5544455567788999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCccEEEEEcCCCceEEEeCCceE-EecCc---eeeeecccchhhhhcCCC
Q 017305 314 PITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSIS-CAPAF---KVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 314 ~~~~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~-~~pa~---~v~vVDttGagdaf~~G~ 372 (374)
.+++++.|+++|+ +.||||+|++|++++++++.+ ++|++ +++++||||+||+|.+|+
T Consensus 212 ~~~~~~~l~~~g~--~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~vvdttGAGDaf~a~~ 272 (319)
T 3lhx_A 212 VEDVIARTHNAGV--KEVVVKRGADSCLVSIAGEALVDVPAVKLPKEKVIDTTAAGDSFSAGY 272 (319)
T ss_dssp HHHHHHHHHHTTC--SEEEEEETTEEEEEEETTSCCEEECCCCCCGGGCCCCTTHHHHHHHHH
T ss_pred HHHHHHHHHhcCC--CEEEEEECCCCeEEEECCcceEEcccccCCCCccCCCCCccHHHHHHH
Confidence 9999999999987 789999999999999887655 89987 568999999999998764
No 13
>1tyy_A Putative sugar kinase; ribokinase fold, alpha/beta, transferase; 2.60A {Salmonella typhimurium LT2} SCOP: c.72.1.1 PDB: 1tz3_A* 1tz6_A*
Probab=100.00 E-value=6.2e-39 Score=304.06 Aligned_cols=256 Identities=21% Similarity=0.248 Sum_probs=199.3
Q ss_pred CCCccEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHH
Q 017305 79 VKSIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGR 158 (374)
Q Consensus 79 ~~~~~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~ 158 (374)
|+|.+|+|+|++++|++... .. .....+||+++|+|+++++||.++.++|.+|+|.+|+
T Consensus 22 ~~m~~ilviG~~~~D~~~~~------~~---------------~~~~~~GG~~~NvA~~la~LG~~~~~ig~vG~D~~G~ 80 (339)
T 1tyy_A 22 KAMNKVWVIGDASVDLVPEK------QN---------------SYLKCPGGASANVGVCVARLGGECGFIGCLGDDDAGR 80 (339)
T ss_dssp ---CCEEEESCCEEEEEECS------SS---------------EEEEEEECHHHHHHHHHHHTTCCEEEEEEECSSHHHH
T ss_pred cccCCEEEECcceeEEeccC------CC---------------ceEEcCCCHHHHHHHHHHHcCCCeEEEEeeCCCHHHH
Confidence 44558999999999999752 10 1223569999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcccHHHHhhccCCcEEE
Q 017305 159 FLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLF 238 (374)
Q Consensus 159 ~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~ 238 (374)
++++.|+++||+++++.+.++. +|+.+++.++++|+|.+...... .... .+.++..+.+.+++++|
T Consensus 81 ~i~~~L~~~gVd~~~v~~~~~~--------~T~~~~v~~~~~g~r~~~~~~~~---~a~~---~l~~~~~~~l~~~~~v~ 146 (339)
T 1tyy_A 81 FLRQVFQDNGVDVTFLRLDADL--------TSAVLIVNLTADGERSFTYLVHP---GADT---YVSPQDLPPFRQYEWFY 146 (339)
T ss_dssp HHHHHHHTTTEECTTEEECTTS--------CCCEEEEC-------CEEECCSS---CGGG---GCCGGGCCCCCTTCEEE
T ss_pred HHHHHHHHcCCCchheEecCCC--------CCeEEEEEEcCCCCeEEEEecCC---Chhh---hCCcchhhHhccCCEEE
Confidence 9999999999999999876654 38888888888888876432211 1111 12222334578899999
Q ss_pred EecCCC-CCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCCCCHHHH
Q 017305 239 CNGYGF-DELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRNPITA 317 (374)
Q Consensus 239 ~~g~~~-~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~~~~~~~ 317 (374)
++++.+ .+.+.+.+.++++.+++.|+++++|++.+.. +|...+...+.+.++++++|++++|++|++.|+|.++++++
T Consensus 147 ~~~~~l~~~~~~~~~~~~~~~a~~~g~~v~~Dp~~~~~-~~~~~~~~~~~~~~ll~~~dil~~N~~Ea~~l~g~~~~~~~ 225 (339)
T 1tyy_A 147 FSSIGLTDRPAREACLEGARRMREAGGYVLFDVNLRSK-MWGNTDEIPELIARSAALASICKVSADELCQLSGASHWQDA 225 (339)
T ss_dssp EEHHHHSSHHHHHHHHHHHHHHHHTTCEEEEECCCCGG-GCSCGGGHHHHHHHHHHHCSEEEEEHHHHHHHHCCSSGGGG
T ss_pred EcchhhcCcccHHHHHHHHHHHHHcCCEEEEeCCCCcc-ccCCHHHHHHHHHHHHhhCCEEecCHHHHHHHhCCCCHHHH
Confidence 988743 3344577888999999999999999998753 55433445667788999999999999999999998888888
Q ss_pred HHHHHHcCCCccEEEEEcCCCceEEEeCCceEEecCceeeeecccchhhhhcCCC
Q 017305 318 GQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 318 ~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
++.|++.|+ +.||||+|++|++++++++.+++|+++++++||||+||+|.+|+
T Consensus 226 ~~~l~~~g~--~~VvvT~G~~G~~~~~~~~~~~~~~~~v~vvDttGAGDaF~ag~ 278 (339)
T 1tyy_A 226 RYYLRDLGC--DTTIISLGADGALLITAEGEFHFPAPRVDVVDTTGAGDAFVGGL 278 (339)
T ss_dssp SSTTGGGTC--SCEEEECGGGCEEEESSSCEEEECCCCCCCSCCTTHHHHHHHHH
T ss_pred HHHHHHcCC--CEEEEEECCCceEEEeCCceEEcCCCCCCcCCCCCchHHHHHHH
Confidence 888888877 78999999999999988888999999999999999999998875
No 14
>2rbc_A Sugar kinase, AGR_C_4560P; ribokinase family, ATP-binding site, structura genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Agrobacterium tumefaciens str}
Probab=100.00 E-value=5.5e-38 Score=297.91 Aligned_cols=252 Identities=16% Similarity=0.192 Sum_probs=205.7
Q ss_pred CCccEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHH
Q 017305 80 KSIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRF 159 (374)
Q Consensus 80 ~~~~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~ 159 (374)
++++|+|+|++++|+++.++++|..++... . ......+||+++|+|+++++||.++.++|.+|+|.+|++
T Consensus 28 ~~~~i~viG~~~iD~~~~~~~~p~~~~~~~---~-------~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~G~~ 97 (343)
T 2rbc_A 28 GGKHVLCVGAAVLDTLFRVADMPKGEGKVL---P-------YEVLQIAEGMASSAAYAVHRMGGRASLWGAVGDDETGTR 97 (343)
T ss_dssp CCCEEEEESCCEEEEEEECSSCCCSSSCCC---C-------SEEEEEEECHHHHHHHHHHHTTCEEEEECEEESSHHHHH
T ss_pred cCCeEEEECcceEEEEeecCCCCCCCCeEe---e-------eeeEEcCCcHHHHHHHHHHHcCCceEEEEEeCCCHHHHH
Confidence 456899999999999999999888775421 0 123456799999999999999999999999999999999
Q ss_pred HHHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcccHHHHhhccCCcEEEE
Q 017305 160 LLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFC 239 (374)
Q Consensus 160 i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~~ 239 (374)
+++.|+++||+++++.+.++. +|+.++++++++|+|+++...+....... +.+. .+.+.+++++|+
T Consensus 98 i~~~L~~~GVd~~~v~~~~~~--------~T~~~~v~~~~~g~r~~~~~~~~~~~~~~---~~l~---~~~l~~~~~v~~ 163 (343)
T 2rbc_A 98 ILRDLSESGIDTSGMTVAPGA--------RSALSTIIIDNRGERLIVPFYDHRLHEKK---RACT---PEDIALFDAVLV 163 (343)
T ss_dssp HHHHHHHTTEECTTCEEETTC--------CCEEEEEEECTTSCEEEEEECCGGGGSSC---CCCC---HHHHTTCSEEEE
T ss_pred HHHHHHHcCCceeeEEEcCCC--------CCceEEEEECCCCCEEEEEcCCCcccCCh---hHhc---HhhhCCCCEEEE
Confidence 999999999999998876554 38899999998899987643321110000 1121 234678999999
Q ss_pred ecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHh-hhccCcEEecCHHHHHHhhCCCCHHHHH
Q 017305 240 NGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSY-FLSTSDVLLLTSDEAESLTGLRNPITAG 318 (374)
Q Consensus 240 ~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~-ll~~~Dil~~N~~Ea~~l~g~~~~~~~~ 318 (374)
+++. ++.+.++++.+++.++++++|+.... +.+.+ +++++|++++|++|++.|+|.+++++++
T Consensus 164 ~~~~-----~~~~~~~~~~a~~~g~~v~~Dp~~~~-----------~~~~~~ll~~~dil~~N~~Ea~~l~g~~~~~~~~ 227 (343)
T 2rbc_A 164 DVRW-----PELALDVLTVARALGKPAILDGDVAP-----------VETLEGLAPAATHIVFSEPAATRLTGLETVKDML 227 (343)
T ss_dssp CSSS-----HHHHHHHHHHHHHTTCCEEEEECSCC-----------HHHHHHHGGGCSEEEEEHHHHHHHHCCSSHHHHH
T ss_pred cCCC-----HHHHHHHHHHHHHCCCEEEEECCccc-----------cccHHHHHhcCCEEEeCHHHHHHHcCCCCHHHHH
Confidence 8643 46788899999999999999997531 34566 8999999999999999999998999999
Q ss_pred HHHHHcCCCccEEEEEcCCCceEEEeCC--ceEEecCceeeeecccchhhhhcCCC
Q 017305 319 QELLRKGLRTKWVVVKMGPRGSILVTKS--SISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 319 ~~l~~~g~~~~~vvvT~G~~Ga~~~~~~--~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
+.|.+.|+ .+.||||+|++|+++++++ +.+++|+++++++||||+||+|.+|+
T Consensus 228 ~~l~~~g~-~~~VvvT~G~~G~~~~~~~~~~~~~~~~~~v~vvDttGAGDaF~ag~ 282 (343)
T 2rbc_A 228 PVLHARYP-QTFIAVTAGPAGCWWTEADDPTVHFQTTMQVEAVDTLAAGDIFHGTF 282 (343)
T ss_dssp HHHHHHST-TSEEEEECGGGCEEEECTTCCCEEEECCCCCCCSCCTTHHHHHHHHH
T ss_pred HHHHHhCC-CceEEEEECCcceEEEeCCCceeEEecCCCCccccCCChHHHHHHHH
Confidence 99999874 1579999999999999887 78899999999999999999998764
No 15
>2qcv_A Putative 5-dehydro-2-deoxygluconokinase; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.90A {Bacillus halodurans c-125}
Probab=100.00 E-value=2e-37 Score=292.81 Aligned_cols=270 Identities=19% Similarity=0.257 Sum_probs=207.3
Q ss_pred cccCCCCccEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCc
Q 017305 75 RSSGVKSIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNE 154 (374)
Q Consensus 75 ~~~~~~~~~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D 154 (374)
...++++++|+|+|++++|++......|. .. . ......+||+++|+|+++++||.++.++|.+|+|
T Consensus 5 ~~~~~~~~~i~viG~~~~D~~~~~~~~~~--~~-----~-------~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D 70 (332)
T 2qcv_A 5 ELSTDREFDLIAIGRACIDLNAVEYNRPM--EE-----T-------MTFSKYVGGSPANIVIGSSKLGLKAGFIGKIADD 70 (332)
T ss_dssp SCSSCCSEEEEEESCCEEEEEESSCSSCG--GG-----C-------CCEEEEEESHHHHHHHHHHHTTCCEEEEEEECSS
T ss_pred ecccccCCcEEEECcceEEEecCCCCCCc--cc-----c-------ceeEecCCCHHHHHHHHHHHcCCceEEEEEeCCC
Confidence 34456677999999999999987644442 11 0 1234567999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcccHHHHhhccCC
Q 017305 155 IYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHS 234 (374)
Q Consensus 155 ~~G~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 234 (374)
.+|+++++.|+++||+++++.+.++.. +|+.+++.++.+|++.+............. .+.+. ...++++
T Consensus 71 ~~G~~l~~~L~~~gV~~~~v~~~~~~~-------~t~~~~v~~~~~g~~~~~~~~~~~a~~~l~-~~~~~---~~~~~~~ 139 (332)
T 2qcv_A 71 QHGRFIESYMRGVGVDTSNLVVDQEGH-------KTGLAFTEIKSPEECSILMYRQDVADLYLS-PEEVN---EAYIRRS 139 (332)
T ss_dssp HHHHHHHHHHHHTTCBCTTEEECSSCC-------CCCEEEEEEEETTEEEEEEECTTCGGGGCC-GGGCC---HHHHTTE
T ss_pred HHHHHHHHHHHHcCCCCcceEecCCCC-------CceEEEEEEcCCCCccEEEECCcchhhhCC-HhHCC---HHHHccC
Confidence 999999999999999999987664321 388888876666776554321110011000 01111 2346789
Q ss_pred cEEEEecCCCC-CCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCC--
Q 017305 235 KVLFCNGYGFD-ELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGL-- 311 (374)
Q Consensus 235 ~~v~~~g~~~~-~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~-- 311 (374)
+++|++|+.+. +.+.+.+.++++.+++.|+++++|++.+.. +|.......+.+.++++++|++++|++|++.|+|.
T Consensus 140 ~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~-~~~~~~~~~~~~~~ll~~~dil~~N~~E~~~l~g~~~ 218 (332)
T 2qcv_A 140 KLLLVSGTALSKSPSREAVLKAIRLAKRNDVKVVFELDYRPY-SWETPEETAVYYSLVAEQSDIVIGTREEFDVLENRTE 218 (332)
T ss_dssp EEEEEEGGGGSSTTHHHHHHHHHHHHHHTTCEEEEECCCCGG-GSSCHHHHHHHHHHHHHHCSEEEEEHHHHHHHTTCSS
T ss_pred CEEEEeCccccCchhHHHHHHHHHHHHHCCCEEEEcCcCchh-hcCCHHHHHHHHHHHHHhCCEEEccHHHHHHHhCCCc
Confidence 99999998653 334578889999999999999999997643 44332334556778999999999999999999997
Q ss_pred -CCHHHHHHHHHHcCCCccEEEEEcCCCceEEEeC-CceEEecCceeeeecccchhhhhcCCC
Q 017305 312 -RNPITAGQELLRKGLRTKWVVVKMGPRGSILVTK-SSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 312 -~~~~~~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~-~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
++..++++.|+++|+ +.||||+|++|++++++ ++.+++|+++++++||||+||+|.+|+
T Consensus 219 ~~~~~~~~~~l~~~g~--~~vvvt~G~~G~~~~~~~~~~~~~~~~~v~vvdt~GAGDaf~a~~ 279 (332)
T 2qcv_A 219 KGDNDETIRYLFKHSP--ELIVIKHGVEGSFAYTKAGEAYRGYAYKTKVLKTFGAGDSYASAF 279 (332)
T ss_dssp CCCHHHHHHHHTTSSC--SEEEEECGGGCEEEEETTSCEEEECCBCCCCSCCTTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCC--CEEEEEECCcceEEEecCCceEEcCCCCccccCCCCcHHHHHHHH
Confidence 467788899998877 78999999999999987 678899999999999999999998764
No 16
>3h49_A Ribokinase; transferase,PFKB family,sugar kinase YDJH, NYSGXRC,11206A,PSI2,, structural genomics, protein structure initiative; 1.80A {Escherichia coli k-12} PDB: 3in1_A*
Probab=100.00 E-value=5e-37 Score=289.32 Aligned_cols=256 Identities=20% Similarity=0.212 Sum_probs=202.6
Q ss_pred CCCccEEEECCeeEEEeecC--------CCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEE
Q 017305 79 VKSIDVATLGNLCVDIVLNV--------PQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGH 150 (374)
Q Consensus 79 ~~~~~vlviG~~~~D~i~~~--------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~ 150 (374)
|++++|+|+|++++|++... +.+|. ......+||+++|+|+++++||.++.++|.
T Consensus 3 m~~~~v~~iG~~~~D~~~~~~~~~~~~~~~~p~-----------------~~~~~~~GG~~~NvA~~la~LG~~~~~ig~ 65 (325)
T 3h49_A 3 LDNLDVICIGAAIVDIPLQPVSKNIFDVDSYPL-----------------ERIAMTTGGDAINEATIISRLGHRTALMSR 65 (325)
T ss_dssp --CEEEEEESCCEEEEEECSCCGGGGGSSCCCC-----------------SCCCCEEESHHHHHHHHHHHTTCEEEEECE
T ss_pred CCCCeEEEEChhhheeeccCCCCccccccccch-----------------heeEEccCcHHHHHHHHHHHCCCCeEEEEE
Confidence 46789999999999997542 22221 123456799999999999999999999999
Q ss_pred ecCchhHHHHHHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcccHHHHhh
Q 017305 151 VGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTA 230 (374)
Q Consensus 151 vG~D~~G~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~ 230 (374)
+|+|.+|+++++.|+++||+++++.+.++. +|+.++++++++|+|+++...+ .....+. ..+...+.
T Consensus 66 vG~D~~G~~i~~~L~~~gV~~~~v~~~~~~--------~T~~~~~~~~~~g~r~~~~~~~----~~~~~~~-~~~~~~~~ 132 (325)
T 3h49_A 66 IGKDAAGQFILDHCRKENIDIQSLKQDVSI--------DTSINVGLVTEDGERTFVTNRN----GSLWKLN-IDDVDFAR 132 (325)
T ss_dssp EESSHHHHHHHHHHHHHTCBCSSCEEETTS--------CCCEEEEEECTTSCEEEECCTT----SHHHHCC-GGGCCGGG
T ss_pred ECCChHHHHHHHHHHHcCCceeeEEecCCC--------CCceEEEEECCCCceeEEeccC----cccccCC-hhhcChhh
Confidence 999999999999999999999998876654 4889999999999998765432 1111110 00111345
Q ss_pred ccCCcEEEEecCCCCC-CCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhh
Q 017305 231 IKHSKVLFCNGYGFDE-LSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLT 309 (374)
Q Consensus 231 l~~~~~v~~~g~~~~~-~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~ 309 (374)
+.+++++|++|+.... .+.+.+.++++.+++.+ .+++|++.+.. +|.. .+.+.++++++|++++|++|++.|+
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~-~~~~d~~~~~~-~~~~----~~~~~~~l~~~dil~~N~~E~~~l~ 206 (325)
T 3h49_A 133 FSQAKLLSLASIFNSPLLDGKALTEIFTQAKARQ-MIICADMIKPR-LNET----LDDICEALSYVDYLFPNFAEAKLLT 206 (325)
T ss_dssp GGGCSEEEEEEETTSTTSCHHHHHHHHHHHHHTT-CEEEEEECCCS-SCCC----HHHHHHHHTTCSEEECBHHHHHHHH
T ss_pred hccCCEEEEecccCCcccCHHHHHHHHHHHHhcC-CEEEecCCchh-hhhH----HHHHHHHHhhCCEEecCHHHHHHHh
Confidence 7889999999975433 45678899999999988 56777655442 3321 3456788999999999999999999
Q ss_pred CCCCHHHHHHHHHHcCCCccEEEEEcCCCceEEEeCCceEEecCcee-eeecccchhhhhcCCC
Q 017305 310 GLRNPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKV-LQLQWVVVLVGMWQPW 372 (374)
Q Consensus 310 g~~~~~~~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v-~vVDttGagdaf~~G~ 372 (374)
|..+.+++++.|.+.|+ +.||||+|++|++++++++.+++|++++ ++|||||+||+|.+|+
T Consensus 207 g~~~~~~~~~~l~~~g~--~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~vvDttGAGDaf~ag~ 268 (325)
T 3h49_A 207 GKETLDEIADCFLACGV--KTVVIKTGKDGCFIKRGDMTMKVPAVAGITAIDTIGAGDNFASGF 268 (325)
T ss_dssp TCSSHHHHHHHHHTTTC--SEEEEECTTSCEEEEETTEEEEECCCSSCCCSCCTTHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCC--CEEEEEeCCCCeEEEECCeEEEecCcCCCCCcCCCChhHHHHHHH
Confidence 99999999999999887 7899999999999999988999999986 8999999999998764
No 17
>3otx_A Adenosine kinase, putative; AP5A, transferase-transferase inhibitor CO; HET: AP5; 1.55A {Trypanosoma brucei} PDB: 2xtb_A*
Probab=100.00 E-value=7e-38 Score=297.79 Aligned_cols=263 Identities=16% Similarity=0.198 Sum_probs=207.1
Q ss_pred CCccEEEECCeeEEEeecCCC--------------------CCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHH
Q 017305 80 KSIDVATLGNLCVDIVLNVPQ--------------------LPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAA 139 (374)
Q Consensus 80 ~~~~vlviG~~~~D~i~~~~~--------------------~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~la 139 (374)
+.++|+++|++++|++..+++ +|..++... .......+||+++|+|++++
T Consensus 6 ~~~~v~~iG~~~lD~~~~v~~~~l~~~~l~~g~~~l~~~~~~p~~~~~~~----------~~~~~~~~GG~~~N~a~~la 75 (347)
T 3otx_A 6 APLRVYVQCNPLLDVSAHVSDEFLVKYGLERGTAILLSERQKGIFDDIEK----------MPNVRYVPGGSGLNVARVAQ 75 (347)
T ss_dssp CCCCEEEECCCEEEEEEECCHHHHHHTTCCTTCEEECCGGGTTHHHHHHT----------STTCEEEECCHHHHHHHHHH
T ss_pred CCCcEEEECCceeeEEEecCHHHHHHcCCCCCceEEcCHHHHHHHHHHhc----------cCCeEEecCCHHHHHHHHHH
Confidence 557899999999999999875 333232211 11455678999999999999
Q ss_pred Hc----CCC-eEEEEEecCchhHHHHHHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCC
Q 017305 140 RL----GLD-CVTIGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKE 214 (374)
Q Consensus 140 rL----G~~-~~~v~~vG~D~~G~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~ 214 (374)
+| |.+ +.++|.||+|.+|+++++.|+++||+++++. .++. +|+.++++++ +|+|+++...+....
T Consensus 76 ~L~~~~G~~~~~~ig~vG~D~~g~~~~~~l~~~GV~~~~~~-~~~~--------~T~~~~i~~~-~g~r~~~~~~ga~~~ 145 (347)
T 3otx_A 76 WMQQAYKGKFVTYVGCIADDRYGKVLKEAAEHEGIVMAVEH-TTKA--------GSGACAVCIT-GKERTLVADLGAANH 145 (347)
T ss_dssp HTTGGGTTSSEEEECEECSSHHHHHHHHHHHHHTCEECCEE-CSSS--------CEEEEEEEEE-TTEEEEEEEEEGGGG
T ss_pred HhcccCCCCeEEEEEEecCChHHHHHHHHHHHCCCceeccc-CCCC--------CCeEEEEEEE-CCceeeeechhhhhc
Confidence 99 999 9999999999999999999999999999985 3333 4899999988 889987653221111
Q ss_pred chhhhhhcccHHHHhhccCCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcc
Q 017305 215 PAFSWMNKLSAEVKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLST 294 (374)
Q Consensus 215 ~~~~~~~~l~~~~~~~l~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~ 294 (374)
...++++. ..+.+.+++++++|++|+.+. .+.+.+.++++.++++|+++++|++... | ....++.+.+++++
T Consensus 146 ~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~a~~~g~~v~~d~~~~~---~--~~~~~~~l~~~l~~ 217 (347)
T 3otx_A 146 LSSEHMRS--PAVVRAMDESRIFYFSGFTLT-VDVNHVLQACRKAREVDGLFMINLSAPF---I--MQFFSAQLGEVLPY 217 (347)
T ss_dssp CCHHHHTS--HHHHHHHHHCSEEEEEGGGGG-TCHHHHHHHHHHHHHTTCEEEEECCCHH---H--HHHCHHHHHHHGGG
T ss_pred CCHHHcCc--hhhHHHHhhCCEEEEeeeecc-cCHHHHHHHHHHHHHhCCEEEeeCchhh---h--HHHHHHHHHHHHhh
Confidence 11111111 223456889999999998754 6788999999999999999999997421 1 12235677889999
Q ss_pred CcEEecCHHHHHHhhCC-----CCHHHHHHHHHH------cCCCccEEEEEcCCCceEEEeCCceEEecCcee---eeec
Q 017305 295 SDVLLLTSDEAESLTGL-----RNPITAGQELLR------KGLRTKWVVVKMGPRGSILVTKSSISCAPAFKV---LQLQ 360 (374)
Q Consensus 295 ~Dil~~N~~Ea~~l~g~-----~~~~~~~~~l~~------~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v---~vVD 360 (374)
+|++++|++|++.|++. ++.+++++.|.+ .++ +.||||+|++|++++++++.+++|++++ ++||
T Consensus 218 ~dil~~N~~Ea~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~g~--~~vvvT~G~~Ga~~~~~~~~~~~~~~~~~~~~vvD 295 (347)
T 3otx_A 218 TDIIVANRHEAKEFANMMKWDTDCVEEIARRAVSEVPYTGTKG--RVVVFTRDIESTVLATKDGVETVPVPQLDQDKVID 295 (347)
T ss_dssp CSEEEEEHHHHHHHHHHHTCCCCCHHHHHHHHHHTSCCCCSSC--CEEEEEETTEEEEEEETTEEEEECCCCCCGGGCCS
T ss_pred CCEEecCHHHHHHHhcccCCCcCCHHHHHHHHHhhhccccCCC--CEEEEEeCCCCeEEEECCeEEEEEecccCCCCCCC
Confidence 99999999999999864 678899999984 555 8899999999999999988889999887 8999
Q ss_pred ccchhhhhcCCC
Q 017305 361 WVVVLVGMWQPW 372 (374)
Q Consensus 361 ttGagdaf~~G~ 372 (374)
||||||+|.+|+
T Consensus 296 ttGAGDaF~ag~ 307 (347)
T 3otx_A 296 MNGAGDAFMGGF 307 (347)
T ss_dssp SCCSHHHHHHHH
T ss_pred CCChHHHHHHHH
Confidence 999999998775
No 18
>3go6_A Ribokinase RBSK; phosphofructokinase, carbohydrate kinase, transferase; HET: RIB ADP; 1.98A {Mycobacterium tuberculosis} PDB: 3go7_A*
Probab=100.00 E-value=2.7e-37 Score=289.15 Aligned_cols=237 Identities=20% Similarity=0.248 Sum_probs=198.3
Q ss_pred CCccEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHH
Q 017305 80 KSIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRF 159 (374)
Q Consensus 80 ~~~~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~ 159 (374)
+|++|+|+|++++|+++.++++|.+++.... . .....+||+++|+|++|++||.++.++|.+|+|.+|++
T Consensus 18 mm~~i~viG~~~iD~~~~v~~~p~~g~~~~~---~-------~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~g~~ 87 (310)
T 3go6_A 18 MAPRVCVVGSVNMDLTFVVDALPRPGETVLA---A-------SLTRTPGGKGANQAVAAARAGAQVQFSGAFGDDPAAAQ 87 (310)
T ss_dssp -CCEEEEECCCEEEEEEECSSCCCTTCCCCC---S-------EEEEEEECHHHHHHHHHHHTTCEEEEECEECSSHHHHH
T ss_pred ccCCEEEECCceEEEEEecCCCCCCCCeEEe---c-------ceeecCCCHHHHHHHHHHHCCCCeEEEEEECCCHHHHH
Confidence 4568999999999999999999988764321 1 23456799999999999999999999999999999999
Q ss_pred HHHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcccHHHHhhccCCcEEEE
Q 017305 160 LLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFC 239 (374)
Q Consensus 160 i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~~ 239 (374)
+++.|+++||+++++...+. +|+.++++++++|+|+++...+.. . .+. ++.+.+++++++|+
T Consensus 88 i~~~L~~~gV~~~~v~~~~~---------~T~~~~~~~~~~g~~~~~~~~ga~-----~---~l~-~~~~~l~~~~~v~~ 149 (310)
T 3go6_A 88 LRAHLRANAVGLDRTVTVPG---------PSGTAIIVVDASAENTVLVAPGAN-----A---HLT-PVPSAVANCDVLLT 149 (310)
T ss_dssp HHHHHHHTTCBCTTCEECSS---------CCEEEEEEECTTSCEEEEEECGGG-----G---GCC-CCTTTTTTCSEEEE
T ss_pred HHHHHHHcCCccceeEecCC---------CCCEEEEEEcCCCCEEEEecCChh-----h---hHH-HHHHHhhcCCEEEE
Confidence 99999999999999865432 489999999989999876543211 1 122 33556889999999
Q ss_pred ecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCCCCHHHHHH
Q 017305 240 NGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRNPITAGQ 319 (374)
Q Consensus 240 ~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~~~~~~~~~ 319 (374)
++ ..+.+.+.++++.+++.|.++++|+++... .++.+.++++++|++++|++|++.|+|.
T Consensus 150 ~~----~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~--------~~~~~~~ll~~~dil~~N~~Ea~~l~g~-------- 209 (310)
T 3go6_A 150 QL----EIPVATALAAARAAQSADAVVMVNASPAGQ--------DRSSLQDLAAIADVVIANEHEANDWPSP-------- 209 (310)
T ss_dssp CS----SSCHHHHHHHHHHHHHTTCEEEEECCSSSC--------CHHHHHHHHHHCSEEEEEHHHHHHSSSC--------
T ss_pred CC----CCCHHHHHHHHHHHHHcCCEEEEcCCcccc--------chHHHHHHHhhCCEEEeCHHHHHHHhCC--------
Confidence 84 566888999999999999999999996542 1456778999999999999999999874
Q ss_pred HHHHcCCCccEEEEEcCCCceEEEeCCceEEecCceeeeecccchhhhhcCCC
Q 017305 320 ELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 320 ~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
+ +.||||+|++|++++++++.+++|++++++|||||+||+|.+|+
T Consensus 210 ------~--~~vvvt~G~~Ga~~~~~~~~~~~~~~~v~vvdttGAGDaF~ag~ 254 (310)
T 3go6_A 210 ------P--THFVITLGVRGARYVGADGVFEVPAPTVTPVDTAGAGDVFAGVL 254 (310)
T ss_dssp ------C--SEEEEECGGGCEEEEETTEEEEECCCCCCCSCCTTHHHHHHHHH
T ss_pred ------C--CEEEEEECCCCEEEEECCceEEeCCCCCCcCcCCCchHHHHHHH
Confidence 3 78999999999999999999999999999999999999998875
No 19
>3loo_A Anopheles gambiae adenosine kinase; AP4A, P4-DI(adenosi tetraphosphate, transferase; HET: B4P; 2.00A {Anopheles gambiae}
Probab=100.00 E-value=7.9e-38 Score=299.39 Aligned_cols=273 Identities=17% Similarity=0.208 Sum_probs=202.7
Q ss_pred cCCCCccEEEECCeeEEEeecCCCC------CCCchhhH------HHHhhhhhcCCCCCccccCCcHHHHHHHHHHc---
Q 017305 77 SGVKSIDVATLGNLCVDIVLNVPQL------PPPSRDAR------KAYMDQLSASPPDKQYWEAGGNCNVAIAAARL--- 141 (374)
Q Consensus 77 ~~~~~~~vlviG~~~~D~i~~~~~~------p~~~~~~~------~~~~~~~~~~~~~~~~~~GG~a~NvA~~larL--- 141 (374)
..|++.+|+++|++++|+++.+++. +++|.... ....+.... ......+||+++|+|+++++|
T Consensus 19 ~~~~~~~v~~iG~~~vD~~~~v~~~~l~~~~l~~g~~~l~~~~~~p~~~e~~~~--~~~~~~~GG~~~N~a~~~~~L~~l 96 (365)
T 3loo_A 19 ESLRDGMLVGLGNPLLDISAVVEKDLLNKYDMQPNNAILAEEKHMPMYQELIEK--YQAEYIAGGSVQNSLRVAQWILQR 96 (365)
T ss_dssp --CCTTSEEEECCCEEEEEEECCHHHHHHTTCCSSEEEECCGGGTHHHHHHHHH--HCCEEEEECHHHHHHHHHHHHHTC
T ss_pred ccCCCccEEEECCCeEeEEEecCHHHHHHcCCCCCCceechhHHHHHHHHHhhc--CCeEEecCCHHHHHHHHHHHhhcC
Confidence 3467778999999999999998871 22221100 000000000 024467799999999999987
Q ss_pred CCCeEEEEEecCchhHHHHHHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhh
Q 017305 142 GLDCVTIGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMN 221 (374)
Q Consensus 142 G~~~~~v~~vG~D~~G~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~ 221 (374)
|.++.++|.+|+|.+|+++++.|+++||+++++.+ ++. +|+.++++++ +|+|+++.+.+.......+
T Consensus 97 G~~~~~ig~vG~D~~g~~~~~~l~~~GV~~~~~~~-~~~--------~Tg~~~i~~~-~~~r~~~~~~ga~~~~~~~--- 163 (365)
T 3loo_A 97 PRTAIFFGCVGQDEYARILEERATSNGVNVQYQRS-ATS--------PTGTCAVLVT-GTQRSLCANLAAANDFTPE--- 163 (365)
T ss_dssp TTSEEEEEEEESBHHHHHHHHHHHHHTCEEEEEEE-SSS--------CCEEEEEEEE-TTEEEEEEECGGGGGCCGG---
T ss_pred CCcEEEEEEecCCchHHHHHHHHHHCCCceecccc-CCC--------CCeEEEEEEE-CCceEEEeccchHhhCCHh---
Confidence 99999999999999999999999999999999876 443 4899999998 7888876532211111111
Q ss_pred ccc-HHHHhhccCCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEec
Q 017305 222 KLS-AEVKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLL 300 (374)
Q Consensus 222 ~l~-~~~~~~l~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~ 300 (374)
.+. ....+.+.+++++|++||.+. .+++.+.++++.+++.|+++++|++... | ....++.+.++++++|++++
T Consensus 164 ~~~~~~~~~~~~~~~~v~i~G~~~~-~~~~~~~~~~~~a~~~g~~v~~d~~~~~---~--~~~~~~~l~~~l~~~dil~~ 237 (365)
T 3loo_A 164 HLRSDGNRAYLQGAQFFYVSGFFFT-VSFESALSVAKEAAATGRMFMMNLSAPF---V--PQFYKNNLEEIFPYVDVLFG 237 (365)
T ss_dssp GGGSHHHHHHHHHCSEEEEEGGGHH-HHHHHHHHHHHHHHHTTCEEEEECCSTH---H--HHHCHHHHHHHGGGCSEEEE
T ss_pred HcCchhhHHHHhhCCEEEEeeeecc-CCHHHHHHHHHHHHHcCCEEEEECCchh---h--hHHHHHHHHHHHHhCCEEec
Confidence 121 233456788999999998653 4567889999999999999999987431 1 12235667889999999999
Q ss_pred CHHHHHHhhCC-----CCHHHHHHHHHHc------CCCccEEEEEcCCCceEEE--eCCceEEecCcee---eeecccch
Q 017305 301 TSDEAESLTGL-----RNPITAGQELLRK------GLRTKWVVVKMGPRGSILV--TKSSISCAPAFKV---LQLQWVVV 364 (374)
Q Consensus 301 N~~Ea~~l~g~-----~~~~~~~~~l~~~------g~~~~~vvvT~G~~Ga~~~--~~~~~~~~pa~~v---~vVDttGa 364 (374)
|++|++.|+|. ++++++++.|.+. ++ +.||||+|++|++++ .+++.+++|++++ ++||||||
T Consensus 238 N~~Ea~~l~g~~~~~~~~~~~~~~~l~~~~~~~~~g~--~~vvvT~G~~Ga~~~~~~~~~~~~~~~~~v~~~~vvDttGA 315 (365)
T 3loo_A 238 NETEAIALAKEFNYGTEDLREIGKRIAALPKENGKRK--RIVIITQGSDPVLLIEAGTDNVREFPVQKLAPEQMVDTNGA 315 (365)
T ss_dssp EHHHHHHHHHHTTCCCCCHHHHHHHHHTSCCSSTTSC--CEEEEEETTEEEEEEETTCSCCEEECCCCCC------CTTH
T ss_pred CHHHHHHHhcccCCCCCCHHHHHHHHHhhhhhccCCC--CEEEEEeCCCCEEEEEecCCeEEEEeccccCCCCccCCCCh
Confidence 99999999863 5788999999875 55 889999999999999 7778889999988 89999999
Q ss_pred hhhhcCCC
Q 017305 365 LVGMWQPW 372 (374)
Q Consensus 365 gdaf~~G~ 372 (374)
||+|.+|+
T Consensus 316 GDaF~agf 323 (365)
T 3loo_A 316 GDAFVGGF 323 (365)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998875
No 20
>3kzh_A Probable sugar kinase; NYSGXRC, PSI-II, protein structure initiative, modified lysin, structural genomics; HET: BGC; 2.45A {Clostridium perfringens}
Probab=100.00 E-value=7.5e-38 Score=295.31 Aligned_cols=254 Identities=15% Similarity=0.090 Sum_probs=203.8
Q ss_pred CCCccEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHH
Q 017305 79 VKSIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGR 158 (374)
Q Consensus 79 ~~~~~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~ 158 (374)
.++++|+|+|++++|++..++++|.+++.... .....+||+++|+|++|++||.++.++|.+|+|.+|+
T Consensus 4 ~~~~~v~viG~~~vD~~~~~~~~~~~g~~~~~-----------~~~~~~GG~~~NvA~~la~LG~~v~~i~~vG~D~~g~ 72 (328)
T 3kzh_A 4 RKEPYLLVFGASVVDVFGFSKASYRPYNSTPG-----------HVKISFGGVCRNIAENMARVGVNTNFMSILGNDEHGK 72 (328)
T ss_dssp CCCCCEEEECCCEEEEEEEESSCCCTTSEEEE-----------EEEEEEECHHHHHHHHHHHTTCCEEEECEECSSHHHH
T ss_pred CCCCcEEEECcEEeeeeeccCCCCCCCCCceE-----------EEEEccCcHHHHHHHHHHHcCCCcEEEEEecCcHHHH
Confidence 35678999999999999999998887765321 2345679999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCcccccc-CCCCCCchhhhhhcccHHHHhhccCCcEE
Q 017305 159 FLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSR-ADFSKEPAFSWMNKLSAEVKTAIKHSKVL 237 (374)
Q Consensus 159 ~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~-~~~~~~~~~~~~~~l~~~~~~~l~~~~~v 237 (374)
++++.|+++||+++++.+.++. +|+.++++++++|+|.+... .........+ ..+...+.+..++++
T Consensus 73 ~i~~~L~~~gv~~~~v~~~~~~--------~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 140 (328)
T 3kzh_A 73 SIVEHSKKIGYHMDDSMVIEGG--------STPTYLAILDENGEMVSAIADMKSIGAMNTD----FIDSKREIFENAEYT 140 (328)
T ss_dssp HHHHHHHHHTEECTTCEECTTC--------CCCEEEEEECTTSCEEEEEEECGGGGGCCHH----HHHHTHHHHHTCSEE
T ss_pred HHHHHHHHcCCCccceEEeCCC--------CCeeEEEEEcCCCCEEEEEEchhhhhhCCHH----HHHHHHHhhccCCEE
Confidence 9999999999999998776654 38899999999999876421 1110000000 112224567899999
Q ss_pred EEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCCC-----
Q 017305 238 FCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLR----- 312 (374)
Q Consensus 238 ~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~~----- 312 (374)
++++. .+ +.+..+++ +++.++++++|+++.. ..+.+.++++++|++++|++|++.|+|..
T Consensus 141 ~~~~~----~~-~~~~~l~~-a~~~~~~v~~D~~~~~---------~~~~~~~~l~~~dil~~N~~E~~~l~g~~~~~~~ 205 (328)
T 3kzh_A 141 VLDSD----NP-EIMEYLLK-NFKDKTNFILDPVSAE---------KASWVKHLIKDFHTIKPNRHEAEILAGFPITDTD 205 (328)
T ss_dssp EEESS----CH-HHHHHHHH-HHTTTSEEEEECCSHH---------HHHTSTTTGGGCSEECCBHHHHHHHHTSCCCSHH
T ss_pred EEeCC----cH-HHHHHHHH-HhhcCCcEEEEeCCHH---------HHHHHHHHhcCCcEEeCCHHHHHHHHCCCCCCHH
Confidence 99864 33 67777777 8889999999998532 12345678899999999999999999953
Q ss_pred CHHHHHHHHHHcCCCccEEEEEcCCCceEEEeCCceEEecCceeeeecccchhhhhcCCC
Q 017305 313 NPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 313 ~~~~~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
+.+++++.|++.|+ +.||||+|++|++++++++.+++|++++++|||||+||+|.+|+
T Consensus 206 ~~~~~~~~l~~~g~--~~vvvt~G~~G~~~~~~~~~~~~~~~~v~vvdttGAGDaf~ag~ 263 (328)
T 3kzh_A 206 DLIKASNYFLGLGI--KKVFISLDADGIFYNDGVSCGKIKATEVDVKNVTGAGDSFVAGL 263 (328)
T ss_dssp HHHHHHHHHHHHTC--CEEEEECGGGCEEEECSSCEEEEEESSCCCSCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC--CEEEEEeCCCCEEEEeCCceEEecCCCcccCCCCChhHHHHHHH
Confidence 46778888998887 88999999999999998889999999999999999999998875
No 21
>3ktn_A Carbohydrate kinase, PFKB family; PFKB family,ribokianse,2-keto-3-deoxygluconate kinase,PSI-II, NYSGXRC,, structural genomics; 2.26A {Enterococcus faecalis}
Probab=100.00 E-value=1.4e-36 Score=288.75 Aligned_cols=261 Identities=13% Similarity=0.115 Sum_probs=201.3
Q ss_pred CccEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHHH
Q 017305 81 SIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFL 160 (374)
Q Consensus 81 ~~~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i 160 (374)
+++|+|+|++++|++.. ..++... .......+||+++|+|++|++||.++.++|.+|+|.+|+++
T Consensus 2 ~~~v~viG~~~~D~~~~-----~~~~~~~----------~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~g~~i 66 (346)
T 3ktn_A 2 SLKIAAFGEVMLRFTPP-----EYLMLEQ----------TEQLRMNFVGTGVNLLANLAHFQLETALITKLPANRLGEAG 66 (346)
T ss_dssp CCEEEEECCCEEEEECS-----TTCCTTT----------CSCCEEEEECHHHHHHHHHHHTTCEEEEEEEECSSHHHHHH
T ss_pred CCcEEEeChhhhhhcCC-----CCCcccc----------cceeEEeccCHHHHHHHHHHHcCCCeEEEEecCCCHHHHHH
Confidence 35899999999999842 2222110 11345678999999999999999999999999999999999
Q ss_pred HHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCcccccc-CCCCCCchhhhh--hcccHHHHhhccCCcEE
Q 017305 161 LDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSR-ADFSKEPAFSWM--NKLSAEVKTAIKHSKVL 237 (374)
Q Consensus 161 ~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~-~~~~~~~~~~~~--~~l~~~~~~~l~~~~~v 237 (374)
++.|+++||+++++... +. +|+.+++.++.+++++++.+ ... ......+ +.+. +.+.+.+++++
T Consensus 67 ~~~l~~~gv~~~~v~~~-~~--------~t~~~~~~~~~~~~~~~~~~~~~~--~~a~~~l~~~~~~--~~~~~~~~~~v 133 (346)
T 3ktn_A 67 KAALRKLGISDQWVGEK-GD--------HIGSFFAEMGYGIRPTQVTYQNRH--QSAFGISEAKDYD--FEAFLAEVDMV 133 (346)
T ss_dssp HHHHHHTTCBCTTEEEC-CS--------CCEEEEEECCBTTBCCEEEECCCT--TSTTTTCCGGGSC--HHHHHTTCSEE
T ss_pred HHHHHHcCCcceEEEeC-CC--------ceEEEEEEecCCCCCceEEecCCC--CChhhhCChhhcC--hHHHhCCCCEE
Confidence 99999999999998764 33 38888888776666555433 110 0000001 1111 23567899999
Q ss_pred EEecCCC--CCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCC--hHHHHHHHhhhccCcEEecCHHHHHHhhCCC-
Q 017305 238 FCNGYGF--DELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGT--PEEQRALSYFLSTSDVLLLTSDEAESLTGLR- 312 (374)
Q Consensus 238 ~~~g~~~--~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~--~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~~- 312 (374)
|++|+.+ .+...+.+.++++.+++.|+++++|++.+.. +|... ....+.+.++++++|++++|++|+..|+|..
T Consensus 134 ~~~g~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~r~~-~~~~~~~~~~~~~~~~ll~~~dil~~N~~E~~~l~g~~~ 212 (346)
T 3ktn_A 134 HICGISLSLTEKTRDAALILAQKAHAYQKKVCFDFNYRPS-LNTANSALFMRQQYERILPYCDIVFGSRRDLVELLGFIP 212 (346)
T ss_dssp EECTHHHHHCHHHHHHHHHHHHHHHHTTCEEEEECCCCGG-GCCHHHHHHHHHHHHHHGGGCSEEECCHHHHHHTSCCCC
T ss_pred EEeCccccCCHHHHHHHHHHHHHHHHcCCEEEEeCCCChH-HcCCccHHHHHHHHHHHHHhCCEEEccHHHHHHHhCCCC
Confidence 9998764 2223367889999999999999999997764 55321 3446778899999999999999999999976
Q ss_pred --------CHHHHHHHHHHc-CCCccEEEEEcCCCc-------eEEEeCCceEEecCceeeeecccchhhhhcCCC
Q 017305 313 --------NPITAGQELLRK-GLRTKWVVVKMGPRG-------SILVTKSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 313 --------~~~~~~~~l~~~-g~~~~~vvvT~G~~G-------a~~~~~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
+.+++++.|+++ |+ +.||||+|++| ++++++++.+++|+++++++||||+||+|.+|+
T Consensus 213 ~~~~~~~~~~~~~~~~l~~~~g~--~~vvvT~G~~G~~~~~~g~~~~~~~~~~~~~~~~v~vvdttGAGDaF~ag~ 286 (346)
T 3ktn_A 213 REDLEGEAQETELIQRFMSQYNL--EWFAGTTRSHSQNQNYLSGYLYTQNEYQQSEKRPLLNLDRIGAGDAYAAGI 286 (346)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHTC--SEEEEEEEEECSSCEEEEEEEECSSCEEECCCEECCCSCCTTHHHHHHHHH
T ss_pred CccccchHHHHHHHHHHHHhcCC--CEEEEecCccccccCcceEEEEECCceEEeCCCccccCCCCchhHHHHHHH
Confidence 356778888875 76 78999999999 999888889999999999999999999998775
No 22
>2v78_A Fructokinase; transferase, PFKB family carbohydrate kinase, 2- keto-3-deoxygluconate kinase; 2.00A {Sulfolobus solfataricus} PDB: 2var_A*
Probab=100.00 E-value=3.8e-37 Score=288.57 Aligned_cols=257 Identities=21% Similarity=0.269 Sum_probs=198.4
Q ss_pred ccEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHHHH
Q 017305 82 IDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLL 161 (374)
Q Consensus 82 ~~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~ 161 (374)
++|+|+|++++|++.. ..++... . ......+||+++|+|+++++||.++.++|.+|+|.+|++++
T Consensus 2 ~~v~viG~~~~D~~~~-----~~~~~~~---~-------~~~~~~~GG~~~N~A~~la~LG~~~~~i~~vG~D~~g~~~~ 66 (313)
T 2v78_A 2 VDVIALGEPLIQFNSF-----NPGPLRF---V-------NYFEKHVAGSELNFCIAVVRNHLSCSLIARVGNDEFGKNII 66 (313)
T ss_dssp CCEEEECCCEEEEEES-----SSSCGGG---C-------CEEEEEEECHHHHHHHHHHHTTCCEEEEEEEESSHHHHHHH
T ss_pred CeEEEECcceEEEecC-----CCCcccc---c-------ceeEecCCChHHHHHHHHHHCCCcEEEEEEeCCCHHHHHHH
Confidence 4799999999999962 2232211 0 12345679999999999999999999999999999999999
Q ss_pred HHHHhcCCcccceeeCCCCCcccCCCccceeEEEE--ECCCCCccccccCCCCCCchhhhhhcccHHHHhhccCCcEEEE
Q 017305 162 DVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVL--VDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFC 239 (374)
Q Consensus 162 ~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~--~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~~ 239 (374)
+.|+++||+++++.+.++. +|+.+++. ++++|++.+............. .+.+. .+.+++++++|+
T Consensus 67 ~~l~~~gv~~~~v~~~~~~--------~t~~~~~~~~~~~~g~~~~~~~~~~~a~~~l~-~~~~~---~~~~~~~~~v~~ 134 (313)
T 2v78_A 67 EYSRAQGIDTSHIKVDNES--------FTGIYFIQRGYPIPMKSELVYYRKGSAGSRLS-PEDIN---ENYVRNSRLVHS 134 (313)
T ss_dssp HHHHHTTCBCTTEEEETTS--------CCCEEEEEESSSSTTCEEEEEECTTCSGGGCC-GGGCC---HHHHHTSSEEEE
T ss_pred HHHHHcCCcCceEEEcCCC--------CceEEEEEEecCCCCCeeEEEeCCcChhHhCC-hhhCC---HHHhcCCCEEEE
Confidence 9999999999998876554 38889888 8888888765322111111110 01122 234678999999
Q ss_pred ecCCC--CCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCc--EEecCHHHHHHhhCCCCHH
Q 017305 240 NGYGF--DELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSD--VLLLTSDEAESLTGLRNPI 315 (374)
Q Consensus 240 ~g~~~--~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~D--il~~N~~Ea~~l~g~~~~~ 315 (374)
+|+.+ .+.+.+.+.++++.+++. ++|++.+.. +|......++.+.++++++| ++++|++|++.|+|.++++
T Consensus 135 ~g~~~~~~~~~~~~~~~~~~~a~~~----~~D~~~~~~-~~~~~~~~~~~~~~~l~~~d~~il~~N~~E~~~l~g~~~~~ 209 (313)
T 2v78_A 135 TGITLAISDNAKEAVIKAFELAKSR----SLDTNIRPK-LWSSLEKAKETILSILKKYDIEVLITDPDDTKILLDVTDPD 209 (313)
T ss_dssp EHHHHHHCHHHHHHHHHHHHHCSSE----EEECCCCGG-GSSCHHHHHHHHHHHHHHSCEEEEEECHHHHHHHHSCCCHH
T ss_pred cCchhhcChHHHHHHHHHHHHHHHh----CcCCcCChh-hcCCHHHHHHHHHHHHHhcCeeEEECcHHHHHHHhCCCCHH
Confidence 98754 233346666777766544 899997653 45332334567788999999 9999999999999998999
Q ss_pred HHHHHHHHcCCCccEEEEEcCCCceEEEeCCceEEecCceeeeecccchhhhhcCCC
Q 017305 316 TAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 316 ~~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
++++.|++.|+ +.||||+|++|++++.+++.+++|+++++++||||+||+|.+|+
T Consensus 210 ~~~~~l~~~g~--~~vvvt~G~~G~~~~~~~~~~~~~~~~v~vvDttGAGDaF~ag~ 264 (313)
T 2v78_A 210 EAYRKYKELGV--KVLLYKLGSKGAIAYKDNVKAFKDAYKVPVEDPTGAGDAMAGTF 264 (313)
T ss_dssp HHHHHHHHTTE--EEEEEECGGGCEEEEETTEEEEECCCCCCCSCCTTHHHHHHHHH
T ss_pred HHHHHHHhCCC--CEEEEEECCCCcEEeeCCcEEEeCCCcCCccCCCCchHHHHHHH
Confidence 99999999876 88999999999999988888999999999999999999998764
No 23
>3ikh_A Carbohydrate kinase; transferase,kinase,SAD,ribose,D-ribose metabolic process,ATP ribokinase, PFKB family,11206L1,PSI-II,nysgxrc; HET: ATP; 1.88A {Klebsiella pneumoniae subsp} PDB: 3i3y_A*
Probab=100.00 E-value=2.9e-37 Score=287.58 Aligned_cols=234 Identities=19% Similarity=0.267 Sum_probs=194.6
Q ss_pred ccEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHHHH
Q 017305 82 IDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLL 161 (374)
Q Consensus 82 ~~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~ 161 (374)
++|+|+|++++|+++.++++|.+++.... . .....+||+++|+|+++++||.++.++|.+|+|.+|++++
T Consensus 3 ~~i~viG~~~iD~~~~~~~~p~~g~~~~~---~-------~~~~~~GG~~~NvA~~la~lG~~~~~i~~vG~D~~g~~i~ 72 (299)
T 3ikh_A 3 LRVYVTGNITVDETWSIPDIPKKGASIHG---V-------KVSQDIGGKGANQAIILSRCGIETRLIAATGNDSNGAWIR 72 (299)
T ss_dssp CCEEEECCCEEEEEEECSSCCCTTCEEEC---E-------EEEEEEECHHHHHHHHHHHTTCCEEEECCCCSSHHHHHHH
T ss_pred ceEEEECceEEEEEEecCCCCCCCCeEEe---e-------eeeeccCCHHHHHHHHHHHCCCCeEEEEEECCCHHHHHHH
Confidence 58999999999999999999988765321 1 2345679999999999999999999999999999999999
Q ss_pred HHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcccHH----HHhhccCCcEE
Q 017305 162 DVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAE----VKTAIKHSKVL 237 (374)
Q Consensus 162 ~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~----~~~~l~~~~~v 237 (374)
+.|+++||+++++. .++. +|+.++++++++|+|+++...+ ... .+..+ ..+.+++++++
T Consensus 73 ~~l~~~gv~~~~v~-~~~~--------~T~~~~~~~~~~g~~~~~~~~~-----a~~---~l~~~~~~~~~~~~~~~~~v 135 (299)
T 3ikh_A 73 QQIKNEPLMLLPDG-HFNQ--------HSDTSIILNSADGDNAIITTTA-----AAD---TFSLDEMIPHMADAVAGDIL 135 (299)
T ss_dssp HHGGGSSCEEESSS-CCSS--------CCEEEEEECSSSCSCEEEEECH-----HHH---HCCHHHHGGGGTTCCTTCEE
T ss_pred HHHHHcCCceeeeE-ecCC--------CCcEEEEEEcCCCCeEEEEeCC-----ccc---cCCHHHHHHHHhhhccCCEE
Confidence 99999999999885 3333 4899999999899998764321 111 12221 13457899999
Q ss_pred EEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCCCCHHHH
Q 017305 238 FCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRNPITA 317 (374)
Q Consensus 238 ~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~~~~~~~ 317 (374)
|+++ ..+.+.+.++++.+++.|.++++|+++... .+.++++++|++++|++|++.|+|
T Consensus 136 ~~~g----~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~-----------~~~~ll~~~dil~~N~~E~~~l~g------- 193 (299)
T 3ikh_A 136 LQQG----NFSLDKTRALFQYARSRGMTTVFNPSPVNP-----------DFCHLWPLIDIAVVNESEAELLQP------- 193 (299)
T ss_dssp EECS----CSCHHHHHHHHHHHHHTTCEEEECCCSCCG-----------GGGGCGGGCSEEEEEHHHHHHHCC-------
T ss_pred EECC----CCCHHHHHHHHHHHHHcCCEEEEccccchh-----------hHHHHHhhCCEEEecHHHHHHHhc-------
Confidence 9985 456788999999999999999999987531 236789999999999999999987
Q ss_pred HHHHHHcCCCccEEEEEcCCCceEEEeCCceEEecCceeeeecccchhhhhcC-CC
Q 017305 318 GQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQWVVVLVGMWQ-PW 372 (374)
Q Consensus 318 ~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDttGagdaf~~-G~ 372 (374)
.|+ +.||||+|++|++++++++.+++|+++++++||||+||+|.+ |+
T Consensus 194 ------~g~--~~vvvt~G~~G~~~~~~~~~~~~~~~~v~vvDttGAGDaf~a~~~ 241 (299)
T 3ikh_A 194 ------YGV--KTLVITQGAAGAWLVQEGQRQFCPAVPAEALDTTGAGDTFLAVML 241 (299)
T ss_dssp ------CSC--SEEEEECGGGCEEEECSSCEEEECCCCCCCSCCTTHHHHHHHHHH
T ss_pred ------CCC--CEEEEEECCCceEEEeCCceEEeCCCCCccCCCCCchHHHHHHHH
Confidence 455 789999999999999888899999999999999999999988 54
No 24
>2c4e_A Sugar kinase MJ0406; transferase, nucleoside kinase, hyperthermophIle, ribokinase ribokinase fold; 1.70A {Methanococcus jannaschii} PDB: 2c49_A
Probab=100.00 E-value=2.6e-37 Score=288.32 Aligned_cols=248 Identities=17% Similarity=0.242 Sum_probs=196.2
Q ss_pred CccEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHHH
Q 017305 81 SIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFL 160 (374)
Q Consensus 81 ~~~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i 160 (374)
|++|+|+|++++|++..++++|..++.... ......+||+++|+|+++++||.++.++|.+|+|.+|+++
T Consensus 5 m~~i~viG~~~iD~~~~~~~~p~~~~~~~~----------~~~~~~~GG~~~N~A~~la~LG~~~~~i~~vG~D~~g~~i 74 (302)
T 2c4e_A 5 MEKITCVGHTALDYIFNVEKFPEPNTSIQI----------PSARKYYGGAAANTAVGIKKLGVNSELLSCVGYDFKNSGY 74 (302)
T ss_dssp EEEEEEESCCEEEEEEECSSCCCTTCCCCC----------SCEEEEEECHHHHHHHHHHHTTCEEEEECEECTTTTTSHH
T ss_pred cCcEEEECceeEEEEecccccCCCCceeee----------cceeecCCCHHHHHHHHHHHCCCceEEEEEEeCCCchHHH
Confidence 447999999999999999999887764310 1234567999999999999999999999999999999999
Q ss_pred HHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcccHHHHhhccCCcEEEEe
Q 017305 161 LDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCN 240 (374)
Q Consensus 161 ~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~~~ 240 (374)
++.|+++||+++++.+.++. +|+.++++++++|+++++.+.+. . . .+..+..+. .+++++|++
T Consensus 75 ~~~l~~~gv~~~~~~~~~~~--------~T~~~~~~~~~~g~~~~~~~~~~----~-~---~~~~~~~~~-~~~~~v~~~ 137 (302)
T 2c4e_A 75 ERYLKNLDINISKLYYSEEE--------ETPKAWIFTDKDNNQITFFLWGA----A-K---HYKELNPPN-FNTEIVHIA 137 (302)
T ss_dssp HHHHHHTTCBCTTCEECSSS--------CCCEEEEEECSSCCEECCEECGG----G-G---GGGGCCCCC-CCEEEEEEC
T ss_pred HHHHHHcCCcccceEeeCCC--------CCceEEEEECCCCCEEEEEeCCh----h-h---hCCHhhcCc-ccCCEEEEe
Confidence 99999999999988766554 38899999988899887643221 1 1 111111111 678999998
Q ss_pred cCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCCCCHHHHHHH
Q 017305 241 GYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRNPITAGQE 320 (374)
Q Consensus 241 g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~~~~~~~~~~ 320 (374)
+. .++.+.++++.+++.| ++++|++++.. .| . .+.+.++++++|++++|++|++.|+|..+..+. .
T Consensus 138 ~~-----~~~~~~~~~~~a~~~g-~v~~D~~~~~~-~~--~---~~~~~~~l~~~dil~~N~~E~~~l~g~~~~~~~--~ 203 (302)
T 2c4e_A 138 TG-----DPEFNLKCAKKAYGNN-LVSFDPGQDLP-QY--S---KEMLLEIIEHTNFLFMNKHEFERASNLLNFEID--D 203 (302)
T ss_dssp SS-----CHHHHHHHHHHHBTTB-EEEECCGGGGG-GC--C---HHHHHHHHHTCSEEEEEHHHHHHHHHHHTCCHH--H
T ss_pred CC-----CcHHHHHHHHHHHhcC-CEEEeCchhhh-hh--h---HHHHHHHHhcCCEEEcCHHHHHHHhCCCCccHH--H
Confidence 53 2478889999999999 99999996432 22 1 345678899999999999999999875332222 6
Q ss_pred HHHcCCCccEEEEEcCCCceEEEeCCceEEecCceee-eecccchhhhhcCCC
Q 017305 321 LLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVL-QLQWVVVLVGMWQPW 372 (374)
Q Consensus 321 l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~-vVDttGagdaf~~G~ 372 (374)
|+++ + +.||||+|++|++++++++.+++|+++++ ++||||+||+|.+|+
T Consensus 204 l~~~-~--~~vvvt~G~~G~~~~~~~~~~~~~~~~v~~~vdt~GAGDaf~a~~ 253 (302)
T 2c4e_A 204 YLER-V--DALIVTKGSKGSVIYTKDKKIEIPCIKAGKVIDPTGAGDSYRAGF 253 (302)
T ss_dssp HHTT-C--SEEEEECGGGCEEEECSSCEEEECCCCCSCCSCCTTHHHHHHHHH
T ss_pred HHhc-C--CEEEEEECCCceEEEeCCcEEEeCCccCCcCCcCCCchHHHHHHH
Confidence 6766 5 78999999999999988888999999998 999999999998764
No 25
>2jg1_A Tagatose-6-phosphate kinase; phosphoryl transfer, conformational changes, transferase, lactose metabolism; HET: MSE ANP TA6; 2.00A {Staphylococcus aureus} PDB: 2jgv_A* 2q5r_A*
Probab=100.00 E-value=3.9e-36 Score=283.82 Aligned_cols=256 Identities=15% Similarity=0.137 Sum_probs=198.6
Q ss_pred cCCCCccEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchh
Q 017305 77 SGVKSIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIY 156 (374)
Q Consensus 77 ~~~~~~~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~ 156 (374)
....+|.++|+|++++|+++.++++ ..++.... . .....+||+++|+|+++++||.++.++|.+|+ .+
T Consensus 16 ~~~~~Mi~~v~G~~~~D~~~~~~~~-~~g~~~~~---~-------~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~-~~ 83 (330)
T 2jg1_A 16 PRGSHMILTLTLNPSVDISYPLTAL-KLDDVNRV---Q-------EVSKTAGGKGLNVTRVLAQVGEPVLASGFIGG-EL 83 (330)
T ss_dssp CCSSCCEEEEESSCEEEEEEEESCC-CTTSEEEE---S-------CCEEEEECHHHHHHHHHHHHTCCEEEEEEEEH-HH
T ss_pred CCCCcEEEEEecchhheEEEecCCc-cCCceEEe---c-------eEEEcCCchHHHHHHHHHHhCCCeEEEEEecc-hh
Confidence 3344467889999999999999987 55654321 1 34456799999999999999999999999996 69
Q ss_pred HHHHHHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcccHHHHhhccCCcE
Q 017305 157 GRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKV 236 (374)
Q Consensus 157 G~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 236 (374)
|+++++.|+++||+++++.+.++ |++++++++++ +++++...+....+ +.++.+.+.+.+.++++++
T Consensus 84 G~~l~~~L~~~gV~~~~v~~~~~----------t~~~~~~v~~~-~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~ 150 (330)
T 2jg1_A 84 GQFIAKKLDHADIKHAFYNIKGE----------TRNCIAILHEG-QQTEILEQGPEIDN--QEAAGFIKHFEQMMEKVEA 150 (330)
T ss_dssp HHHHHHHHHHTTCEECCEEESSC----------CEEEEEEEETT-EEEEEEECCCBCCH--HHHHHHHHHHHHHGGGCSE
T ss_pred HHHHHHHHHHCCCceeEEEccCC----------CeeEEEEEeCC-CcEEEECCCCCCCH--HHHHHHHHHHHHhcCCCCE
Confidence 99999999999999999876543 55667777765 65554433221111 1111222223345789999
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhc---cCcEEecCHHHHHHhhCCC-
Q 017305 237 LFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLS---TSDVLLLTSDEAESLTGLR- 312 (374)
Q Consensus 237 v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~---~~Dil~~N~~Ea~~l~g~~- 312 (374)
+|++|+.....+.+.+.++++.++++|+++++|+++. .+.++++ ++|++++|++|++.|+|..
T Consensus 151 v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~-------------~l~~~l~~~~~~dil~~N~~E~~~l~g~~~ 217 (330)
T 2jg1_A 151 VAISGSLPKGLNQDYYAQIIERCQNKGVPVILDCSGA-------------TLQTVLENPYKPTVIKPNISELYQLLNQPL 217 (330)
T ss_dssp EEEESCCCBTSCTTHHHHHHHHHHTTTCCEEEECCHH-------------HHHHHHTSSSCCSEECCBHHHHHHHTTSCC
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCcH-------------HHHHHHhccCCceEEEeCHHHHHHHhCCCC
Confidence 9999886555666788899999999999999999731 2456666 8999999999999999863
Q ss_pred -----CHHHHHHHHHHcCCCccEEEEEcCCCceEEEeCCceEEecCceeeeecccchhhhhcCCC
Q 017305 313 -----NPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 313 -----~~~~~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
+.+++++.|+++|+ +.||||+|++|++++++++.+++|+++++++|||||||+|.+|+
T Consensus 218 ~~~~~~~~~~~~~l~~~g~--~~VvvT~G~~Ga~~~~~~~~~~~~~~~v~vvDttGAGDaF~ag~ 280 (330)
T 2jg1_A 218 DESLESLKQAVSQPLFEGI--EWIIVSLGAQGAFAKHNHTFYRVNIPTISVLNPVGSGDSTVAGI 280 (330)
T ss_dssp CCCHHHHHHHHHSGGGTTC--SEEEEECGGGCEEEEETTEEEEEECCCCCCSCCTTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCC--CEEEEeecCCceEEEeCCCEEEEeCCCccccCCCcHHHHHHHHH
Confidence 34567777888876 78999999999999988888999999999999999999998764
No 26
>4e84_A D-beta-D-heptose 7-phosphate kinase; LPS-heptose biosynthesis, beta-clAsp dimerization region, PF carbohydrate kinase, phosphorylation; HET: MSE ANP M7B GMZ; 2.60A {Burkholderia cenocepacia} PDB: 4e8w_A* 4e8y_A* 4e8z_A*
Probab=100.00 E-value=9.3e-37 Score=290.31 Aligned_cols=258 Identities=15% Similarity=0.130 Sum_probs=196.0
Q ss_pred hhhcccCCCCccEEEECCeeEEEeec--CCC----CCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCe
Q 017305 72 WKLRSSGVKSIDVATLGNLCVDIVLN--VPQ----LPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDC 145 (374)
Q Consensus 72 ~~~~~~~~~~~~vlviG~~~~D~i~~--~~~----~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~ 145 (374)
.....+.+++++|+|+|++++|++.. +++ .|.+.... . .....+||+ +|+|+++++||.++
T Consensus 44 ~~~~~~~~~~~~ilvvG~~~~D~~~~g~v~r~~p~~p~~~~~~-----~-------~~~~~~GG~-~NvA~~la~LG~~v 110 (352)
T 4e84_A 44 VPVPREQLARSRVLVVGDVMLDRYWFGNVDRISPEAPVPVVHV-----Q-------RQEERLGGA-ANVARNAVTLGGQA 110 (352)
T ss_dssp CCCCHHHHTTCEEEEEECEEEEEEEEEEEEEECSSSSSEEEEE-----E-------EEEEEEEEH-HHHHHHHHHTTCEE
T ss_pred HHHHHHhcCCCcEEEECccceEEEEeecccccCCCCCcceEEe-----e-------EEEEecChH-HHHHHHHHHcCCCE
Confidence 33445557888999999999999986 433 34443211 1 223456886 89999999999999
Q ss_pred EEEEEecCchhHHHHHHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcccH
Q 017305 146 VTIGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSA 225 (374)
Q Consensus 146 ~~v~~vG~D~~G~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~ 225 (374)
.++|.+|+|.+|+++++.|+++||++. +.+.++. +|+.+++++++++++..+.... .+.......+.+
T Consensus 111 ~~ig~vG~D~~G~~i~~~L~~~GV~~~-~~~~~~~--------~T~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 178 (352)
T 4e84_A 111 GLLCVVGCDEPGERIVELLGSSGVTPH-LERDPAL--------PTTIKLRVLARQQQLLRVDFEA---MPTHEVLLAGLA 178 (352)
T ss_dssp EEEEEEESSHHHHHHHHHHTTTSCEEE-EEEETTS--------CCCEEEEEEESSCEEEEEEECC---CCCHHHHHHHHH
T ss_pred EEEEEeCCChhHHHHHHHHHHcCCcee-eEECCCC--------CCceEEEEEcCCceEEEEEcCC---CCCHHHHHHHHH
Confidence 999999999999999999999999994 4444443 3888888888766544332211 111111122223
Q ss_pred HHHhhccCCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHH
Q 017305 226 EVKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEA 305 (374)
Q Consensus 226 ~~~~~l~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea 305 (374)
.+.+.+++++++|++||.... .+.+.++++.+++.|+++++|+++.. | ++++++|++++|++|+
T Consensus 179 ~~~~~l~~~~~v~~~g~~~~~--~~~~~~~~~~a~~~g~~v~~D~~~~~---~-----------~~l~~~dil~pN~~Ea 242 (352)
T 4e84_A 179 RFDVLLPQHDVVLMSDYAKGG--LTHVTTMIEKARAAGKAVLVDPKGDD---W-----------ARYRGASLITPNRAEL 242 (352)
T ss_dssp HHHHHGGGCSEEEEECCSSSS--CSSHHHHHHHHHHTTCEEEEECCSSC---C-----------STTTTCSEECCBHHHH
T ss_pred HHHHhcccCCEEEEeCCCCCC--HHHHHHHHHHHHhcCCEEEEECCCcc---h-----------hhccCCcEEcCCHHHH
Confidence 445678999999999875322 23477888999999999999998742 2 4788999999999999
Q ss_pred HHhhCC----CCHHHHHHHHHH-cCCCccEEEEEcCCCceEEEeCCceEEecCceeeeecccchhhhhcCCC
Q 017305 306 ESLTGL----RNPITAGQELLR-KGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 306 ~~l~g~----~~~~~~~~~l~~-~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
+.|+|. ++.+++++.|++ .|+ +.||||+|++|++++++++.+++|++++++||||||||+|.+|+
T Consensus 243 ~~l~g~~~~~~~~~~~a~~l~~~~g~--~~VvvT~G~~Ga~~~~~~~~~~~pa~~v~vvDttGAGDaF~ag~ 312 (352)
T 4e84_A 243 REVVGQWKSEDDLRARVANLRAELDI--DALLLTRSEEGMTLFSAGGELHAPALAREVFDVSGAGDTVIATV 312 (352)
T ss_dssp HHHHCCCSSHHHHHHHHHHHHHHHTC--SEEEEECGGGCEEEEETTEEEEECCCCSCCSCCTTHHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHhCC--CEEEEEcCCCcEEEEECCceEEecCCCcCccCCccccHHHHHHH
Confidence 999983 234567778875 576 78999999999999999999999999999999999999998774
No 27
>1v1a_A 2-keto-3-deoxygluconate kinase; ATP, structural genomics, transferase, riken structural genomics/proteomics initiative, RSGI; HET: KDG ADP; 2.1A {Thermus thermophilus} SCOP: c.72.1.1 PDB: 1v19_A* 1v1b_A* 1v1s_A
Probab=100.00 E-value=4.3e-36 Score=280.90 Aligned_cols=253 Identities=23% Similarity=0.221 Sum_probs=195.1
Q ss_pred ccEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHHHH
Q 017305 82 IDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLL 161 (374)
Q Consensus 82 ~~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~ 161 (374)
++|+|+|++++|++.. ..+.... . ......+||+++|+|+++++||.++.++|.+|+|.+|++++
T Consensus 2 ~~i~viG~~~~D~~~~-----~~~~~~~---~-------~~~~~~~GG~~~NvA~~la~LG~~~~~~~~vG~D~~g~~i~ 66 (309)
T 1v1a_A 2 LEVVTAGEPLVALVPQ-----EPGHLRG---K-------RLLEVYVGGAEVNVAVALARLGVKVGFVGRVGEDELGAMVE 66 (309)
T ss_dssp CSEEEESCCEEEEECS-----SSSCGGG---C-------CEEEEEEECHHHHHHHHHHHHTCCEEEEEEECSSHHHHHHH
T ss_pred CcEEEEccceEEEecC-----CCCcccc---h-------heeeeecCcHHHHHHHHHHHcCCCeEEEEEeCCCHHHHHHH
Confidence 5899999999999852 2222111 0 12344679999999999999999999999999999999999
Q ss_pred HHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcccHHHHhhccCCcEEEEec
Q 017305 162 DVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNG 241 (374)
Q Consensus 162 ~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~~~g 241 (374)
+.|+++||+++++.+.++ + |+.+++.++++|++.+.+........... .+.+. .+.+++++++|++|
T Consensus 67 ~~L~~~gv~~~~v~~~~~-~--------t~~~~~~~~~~g~~~~~~~~~~~a~~~~~-~~~~~---~~~~~~~~~v~~~g 133 (309)
T 1v1a_A 67 ERLRAEGVDLTHFRRAPG-F--------TGLYLREYLPLGQGRVFYYRKGSAGSALA-PGAFD---PDYLEGVRFLHLSG 133 (309)
T ss_dssp HHHHHHTCBCTTEEECSS-C--------CCEEEEEECTTSCEEEEEECTTCSGGGCC-TTSSC---GGGGTTCSEEEEET
T ss_pred HHHHHcCCCCceEEEcCC-C--------CEEEEEEECCCCCceEEEeCCCChhhhCC-HhhCC---hhHhcCCCEEEEeC
Confidence 999999999999987665 4 88888888888888765322111111110 01111 23468899999999
Q ss_pred CCCC--CCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCCCCHHHHHH
Q 017305 242 YGFD--ELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRNPITAGQ 319 (374)
Q Consensus 242 ~~~~--~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~~~~~~~~~ 319 (374)
+.+. +.+.+.+.++++.+++.|+++++|++.+.. +|. .+...+.+.++++++|++++|++|++.|+|.. +++++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~-~~~-~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~~--~~~~~ 209 (309)
T 1v1a_A 134 ITPALSPEARAFSLWAMEEAKRRGVRVSLDVNYRQT-LWS-PEEARGFLERALPGVDLLFLSEEEAELLFGRV--EEALR 209 (309)
T ss_dssp TGGGSCHHHHHHHHHHHHHHHTTTCEEEEECCCCTT-TSC-HHHHHHHHHHHGGGCSEEEEEHHHHHHHHSSH--HHHHH
T ss_pred chhccCchHHHHHHHHHHHHHHcCCEEEEeCCCCcc-cCC-HHHHHHHHHHHHHhCCEEECcHHHHHHHhCCH--HHHHH
Confidence 8652 344577888999999999999999998753 452 23445677889999999999999999999864 45544
Q ss_pred HHHHcCCCccEEEEEcCCCceEEEeC-CceEEecCceeeeecccchhhhhcCCC
Q 017305 320 ELLRKGLRTKWVVVKMGPRGSILVTK-SSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 320 ~l~~~g~~~~~vvvT~G~~Ga~~~~~-~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
+.|+ +.||||+|++|+++ .+ ++.+++|+++++++||||+||+|.+|+
T Consensus 210 ---~~g~--~~vvvt~G~~G~~~-~~~~~~~~~~~~~v~vvdttGAGDaf~a~~ 257 (309)
T 1v1a_A 210 ---ALSA--PEVVLKRGAKGAWA-FVDGRRVEGSAFAVEAVDPVGAGDAFAAGY 257 (309)
T ss_dssp ---HTCC--SEEEEECGGGCEEE-EETTEEEECCCCCCCCSCCTTHHHHHHHHH
T ss_pred ---hcCC--CEEEEEecCCCeeE-ecCCcEEEeCCCCCCcCCCCCchHHHHHHH
Confidence 5666 78999999999998 65 678899999999999999999998764
No 28
>1vm7_A Ribokinase; TM0960, structural genomics, JCSG, protein struc initiative, PSI, joint center for structural genomics, TRAN; 2.15A {Thermotoga maritima} SCOP: c.72.1.1
Probab=100.00 E-value=4.4e-36 Score=281.16 Aligned_cols=244 Identities=21% Similarity=0.312 Sum_probs=194.5
Q ss_pred ccEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCC-eEEEEEecCchhHHHH
Q 017305 82 IDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLD-CVTIGHVGNEIYGRFL 160 (374)
Q Consensus 82 ~~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~-~~~v~~vG~D~~G~~i 160 (374)
.+|+|+|++++|+++.++++|..++.... . .....+||+++|+|+++++||.+ +.++|.+|+|.+|+++
T Consensus 15 ~~v~vvG~~~iD~~~~~~~~p~~g~~~~~---~-------~~~~~~GG~~~NvA~~la~LG~~~~~~i~~vG~D~~G~~l 84 (311)
T 1vm7_A 15 LVISVVGSSNIDIVLKVDHFTKPGETQKA---I-------EMNVFPGGKGANQAVTVAKIGEKGCRFVTCIGNDDYSDLL 84 (311)
T ss_dssp CCEEEECCCEEEEEEECSSCCCTTCEEEC---S-------EEEEEEECHHHHHHHHHHHHHSSCEEEEEEECSSHHHHHH
T ss_pred CCEEEECcceeeEEEecccCCCCCceEec---C-------eeeecCCCHHHHHHHHHHHcCCCceEEEEEECCChHHHHH
Confidence 47999999999999999999988764321 1 23456799999999999999999 9999999999999999
Q ss_pred HHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcccHHHHhhccCCcEEEEe
Q 017305 161 LDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCN 240 (374)
Q Consensus 161 ~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~~~ 240 (374)
++.|+++|| ++.+.++. +|+.++++++++|+++++...+....... +.+. .+.++++++++++
T Consensus 85 ~~~L~~~gV---~v~~~~~~--------~T~~~~~~~~~~g~~~~~~~~ga~~~l~~---~~~~---~~~~~~~~~v~~~ 147 (311)
T 1vm7_A 85 IENYEKLGI---TGYIRVSL--------PTGRAFIEVDKTGQNRIIIFPGANAELKK---ELID---WNTLSESDILLLQ 147 (311)
T ss_dssp HHHHHHTTE---EEEEECSS--------CCCEEEEEECTTSCEEEEEECGGGGGCCG---GGCC---HHHHTTCSEEEEC
T ss_pred HHHHHHCCC---EEEEcCCC--------CCeEEEEEECCCCCEEEEEecCccccCCH---HHhC---hhhcccCCEEEEe
Confidence 999999999 56554443 48899999998899887653321100000 1111 3457889999997
Q ss_pred cCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCC-----CCHH
Q 017305 241 GYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGL-----RNPI 315 (374)
Q Consensus 241 g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~-----~~~~ 315 (374)
+ ..+.+.+..+ +++.+.++++|+++... + +.++++++|++++|++|++.|+|. ++.+
T Consensus 148 ~----~~~~~~~~~~---a~~~~~~v~~Dp~~~~~-~----------~~~ll~~~dil~~N~~E~~~l~g~~~~~~~~~~ 209 (311)
T 1vm7_A 148 N----EIPFETTLEC---AKRFNGIVIFDPAPAQG-I----------NEEIFQYLDYLTPNEKEIEALSKDFFGEFLTVE 209 (311)
T ss_dssp S----SSCHHHHHHH---HHHCCSEEEECCCSCTT-C----------CGGGGGGCSEECCBHHHHHHHHHHHHSCCCCHH
T ss_pred C----CCCHHHHHHH---HHHcCCEEEEeCcchhh-h----------hHHHHhhCCEEeCCHHHHHHHhCCCCCChhHHH
Confidence 4 3445544433 77889999999997432 1 247899999999999999999875 5788
Q ss_pred HHHHHHHHcCCCccEEEEEcCCCceEEEeCCceEEecCceeeeecccchhhhhcCCC
Q 017305 316 TAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 316 ~~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
++++.|+++|+ +.||||+|++|++++++++.+++|+++++++||||+||+|.+|+
T Consensus 210 ~~~~~l~~~g~--~~vvvT~G~~G~~~~~~~~~~~~~~~~v~~vdttGAGDaf~a~~ 264 (311)
T 1vm7_A 210 KAAEKFLELGV--KNVIVKLGDKGVLLVNKNEKKHFPTFKVKAVDTTAAGDVFNGAF 264 (311)
T ss_dssp HHHHHHHHTTC--SEEEEECGGGCEEEEETTEEEEECCCCCCCSCCTTHHHHHHHHH
T ss_pred HHHHHHHHcCC--CEEEEEECCCCeEEEeCCceEEecCCCcccCCCCccHHHHHHHH
Confidence 89999999887 78999999999999988888899999999999999999998764
No 29
>1bx4_A Protein (adenosine kinase); human adenosine kinase, transferase; HET: ADN; 1.50A {Homo sapiens} SCOP: c.72.1.1 PDB: 2i6a_A* 2i6b_A*
Probab=100.00 E-value=1.1e-36 Score=289.22 Aligned_cols=271 Identities=12% Similarity=0.147 Sum_probs=203.5
Q ss_pred CCccEEEECCeeEEEeecCCC-C-----CCCchhhH------HHHhhhhhcCCCCCccccCCcHHHHHHHHHHcC----C
Q 017305 80 KSIDVATLGNLCVDIVLNVPQ-L-----PPPSRDAR------KAYMDQLSASPPDKQYWEAGGNCNVAIAAARLG----L 143 (374)
Q Consensus 80 ~~~~vlviG~~~~D~i~~~~~-~-----p~~~~~~~------~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG----~ 143 (374)
+.++|+|+|++++|+++.+++ + +.+++... ....+.+.. ......+||+++|+|+++++|| .
T Consensus 5 ~~~~v~viG~~~~D~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~--~~~~~~~GG~~~NvA~~la~lgg~~~~ 82 (345)
T 1bx4_A 5 RENILFGMGNPLLDISAVVDKDFLDKYSLKPNDQILAEDKHKELFDELVKK--FKVEYHAGGSTQNSIKVAQWMIQQPHK 82 (345)
T ss_dssp CTTCEEEECCCEEEEEEECCHHHHHHTTCCSSEEEECCGGGHHHHHHHHHH--SCCEEEEECHHHHHHHHHHHHHCSSTT
T ss_pred ccccEEEECCcceeEEEecCHHHHHHcCCCCCcEEEchHHHHHHHHHHhcc--CCceecCCcHHHHHHHHHHHhcCCCCC
Confidence 456899999999999999876 2 33332110 000000100 1345678999999999999996 9
Q ss_pred CeEEEEEecCchhHHHHHHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhh-hhhc
Q 017305 144 DCVTIGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFS-WMNK 222 (374)
Q Consensus 144 ~~~~v~~vG~D~~G~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~-~~~~ 222 (374)
++.++|.+|+|.+|+++++.|+++||+++++.. ++. +|+.++++++ +|+|+++...+.......+ +++.
T Consensus 83 ~~~~ig~vG~D~~G~~i~~~L~~~gv~~~~v~~-~~~--------~T~~~~~~~~-~g~r~~~~~~~a~~~~~~~~~~~~ 152 (345)
T 1bx4_A 83 AATFFGCIGIDKFGEILKRKAAEAHVDAHYYEQ-NEQ--------PTGTCAACIT-GDNRSLIANLAAANCYKKEKHLDL 152 (345)
T ss_dssp CEEEEEEEESSHHHHHHHHHHHHTTCEEEEEEE-SSS--------CCCEEEEEEE-TTEEEEEEECGGGGGCCGGGTTTS
T ss_pred cEEEEEEeCCChhHHHHHHHHHHcCCceeeeec-CCC--------CCceEEEEEc-CCceEeeeccchHhhcCcccccCc
Confidence 999999999999999999999999999999864 332 4888888887 6787765322111001111 1111
Q ss_pred ccHHHHhhccCCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCH
Q 017305 223 LSAEVKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTS 302 (374)
Q Consensus 223 l~~~~~~~l~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~ 302 (374)
+...+.+++++++|++|+.+ ..+.+.+.++++.+++.|+++++|+... +| .+..++.+.++++++|++++|+
T Consensus 153 --~~~~~~~~~~~~v~~~g~~~-~~~~~~~~~~~~~a~~~g~~v~~d~~~~---~~--~~~~~~~~~~~l~~~dil~~N~ 224 (345)
T 1bx4_A 153 --EKNWMLVEKARVCYIAGFFL-TVSPESVLKVAHHASENNRIFTLNLSAP---FI--SQFYKESLMKVMPYVDILFGNE 224 (345)
T ss_dssp --HHHHHHHHHCSEEEEEGGGG-GTCHHHHHHHHHHHHHTTCEEEEECCSH---HH--HHHTHHHHHHHGGGCSEEEEEH
T ss_pred --HHHHHHHhhCCEEEEEEEec-cCCHHHHHHHHHHHHHcCCEEEEeCCcH---HH--HHHHHHHHHHHhccCCEEeCCH
Confidence 22345577899999999875 3677889999999999999999998743 22 1223456678999999999999
Q ss_pred HHHHHhhC-----CCCHHHHHHHHHH------cCCCccEEEEEcCCCceEEEeCCceEEecCcee---eeecccchhhhh
Q 017305 303 DEAESLTG-----LRNPITAGQELLR------KGLRTKWVVVKMGPRGSILVTKSSISCAPAFKV---LQLQWVVVLVGM 368 (374)
Q Consensus 303 ~Ea~~l~g-----~~~~~~~~~~l~~------~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v---~vVDttGagdaf 368 (374)
+|++.|+| .++.+++++.|++ .|+ +.||||+|++|++++++++.+++|++++ +++||||+||+|
T Consensus 225 ~E~~~l~g~~~~~~~~~~~~~~~l~~~~~~~~~g~--~~vvvt~G~~G~~~~~~~~~~~~~~~~v~~~~vvDttGAGDaf 302 (345)
T 1bx4_A 225 TEAATFAREQGFETKDIKEIAKKTQALPKMNSKRQ--RIVIFTQGRDDTIMATESEVTAFAVLDQDQKEIIDTNGAGDAF 302 (345)
T ss_dssp HHHHHHHHHTTCCCCCHHHHHHHHHTSCCSCTTSC--CEEEEEETTEEEEEECSSCEEEECCCCCCCTTCCCHHHHHHHH
T ss_pred HHHHHHhcccCCCCCCHHHHHHHHHhcccccccCC--CEEEEEeCCCCeEEEECCeEEEEeccccCcCccccCCCcchHH
Confidence 99999975 3478889999988 466 7899999999999998888899999887 899999999999
Q ss_pred cCCC
Q 017305 369 WQPW 372 (374)
Q Consensus 369 ~~G~ 372 (374)
.+|+
T Consensus 303 ~ag~ 306 (345)
T 1bx4_A 303 VGGF 306 (345)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 30
>2dcn_A Hypothetical fructokinase; 2-keto-3-deoxygluconate kinase, 2-keto- gluconate, transferase; HET: CKP ADP; 2.25A {Sulfolobus tokodaii} SCOP: c.72.1.1 PDB: 1wye_A*
Probab=100.00 E-value=1.4e-36 Score=284.47 Aligned_cols=255 Identities=19% Similarity=0.264 Sum_probs=197.7
Q ss_pred ccEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHHHH
Q 017305 82 IDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLL 161 (374)
Q Consensus 82 ~~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~ 161 (374)
++|+|+|++++|++.. ..++... . ......+||+++|+|+++++||.++.++|.+|+|.+|++++
T Consensus 2 ~~v~viG~~~~D~~~~-----~~~~~~~---~-------~~~~~~~GG~~~NvA~~la~LG~~~~~~~~vG~D~~g~~i~ 66 (311)
T 2dcn_A 2 AKLITLGEILIEFNAL-----SPGPLRH---V-------SYFEKHVAGSEANYCVAFIKQGNECGIIAKVGDDEFGYNAI 66 (311)
T ss_dssp CEEEEESCCEEEEEES-----SSSCGGG---C-------CEEEEEEECHHHHHHHHHHHTTCEEEEECEEESSHHHHHHH
T ss_pred CCEEEECCceEEEecC-----CCCcccc---c-------ceeeecCCChHHHHHHHHHHCCCceEEEEEeCCCHHHHHHH
Confidence 4799999999999973 2332211 0 12345679999999999999999999999999999999999
Q ss_pred HHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCC--ccccccCCCCCCchhhhhhcccHHHHhhccCCcEEEE
Q 017305 162 DVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQR--HGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFC 239 (374)
Q Consensus 162 ~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~--r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~~ 239 (374)
+.|+++||+++++.+.++. +|+.+++.++++|+ |.+............. .+.+. .+.+++++++|+
T Consensus 67 ~~l~~~gv~~~~v~~~~~~--------~t~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~~~~---~~~~~~~~~v~~ 134 (311)
T 2dcn_A 67 EWLRGQGVDVSHMKIDPSA--------PTGIFFIQRHYPVPLKSESIYYRKGSAGSKLS-PEDVD---EEYVKSADLVHS 134 (311)
T ss_dssp HHHHHTTCBCTTCEEETTS--------CCCEEEEEESCSSTTCEEEEEECTTCTGGGCC-GGGCC---HHHHTTCSEEEE
T ss_pred HHHHHcCCCcceEEEcCCC--------CceEEEEEECCCCCccceEEEecCcChhhhCC-hhhcC---hHHHcCCCEEEE
Confidence 9999999999998876654 38889998888888 7765322111111110 01121 234678999999
Q ss_pred ecCCC--CCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhc--cCcEEecCHHHHHHhhCCCCHH
Q 017305 240 NGYGF--DELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLS--TSDVLLLTSDEAESLTGLRNPI 315 (374)
Q Consensus 240 ~g~~~--~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~--~~Dil~~N~~Ea~~l~g~~~~~ 315 (374)
+|+.+ .+.+.+.+.++++.+++. ++|++.+.. +|. .....+.+.++++ ++|++++|++|++.|+|.++++
T Consensus 135 ~g~~~~~~~~~~~~~~~~~~~a~~~----~~D~~~~~~-~~~-~~~~~~~~~~~l~~~~~dil~~N~~E~~~l~g~~~~~ 208 (311)
T 2dcn_A 135 SGITLAISSTAKEAVYKAFEIASNR----SFDTNIRLK-LWS-AEEAKREILKLLSKFHLKFLITDTDDSKIILGESDPD 208 (311)
T ss_dssp EHHHHHSCHHHHHHHHHHHHHCSSE----EEECCCCTT-TSC-HHHHHHHHHHHHHHCCEEEEEEEHHHHHHHHSCCCHH
T ss_pred eCcccccChHHHHHHHHHHHHHHHh----CcCccCchh-hCC-hHHHHHHHHHHHhhcCCcEEECCHHHHHHHhCCCCHH
Confidence 98754 233456677777776654 899998653 453 2334566788999 9999999999999999998999
Q ss_pred HHHHHHHHcCCCccEEEEEcCCCceEEEeCCceEEecCceeeeecccchhhhhcCCC
Q 017305 316 TAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 316 ~~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
++++.|++. + +.||||+|++|++++++++.+++|+++++++||||+||+|.+|+
T Consensus 209 ~~~~~l~~~-~--~~vvvt~G~~G~~~~~~~~~~~~~~~~v~vvdttGAGDaf~a~~ 262 (311)
T 2dcn_A 209 KAAKAFSDY-A--EIIVMKLGPKGAIVYYDGKKYYSSGYQVPVEDVTGAGDALGGTF 262 (311)
T ss_dssp HHHHHHTTT-E--EEEEEEEETTEEEEEETTEEEEEECCCCCCSCCTTHHHHHHHHH
T ss_pred HHHHHHHHh-C--CEEEEEECCCCcEEEeCCcEEEeCCccccccCCCCchHHHHHHH
Confidence 999999887 5 88999999999999998888999999999999999999998764
No 31
>2nwh_A AGR_C_3442P, carbohydrate kinase; structural genomics, APC6199, PSI-2, PR structure initiative 2; 1.86A {Agrobacterium tumefaciens str}
Probab=100.00 E-value=2e-36 Score=284.24 Aligned_cols=254 Identities=18% Similarity=0.140 Sum_probs=197.1
Q ss_pred ccEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHHHH
Q 017305 82 IDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLL 161 (374)
Q Consensus 82 ~~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~ 161 (374)
.+|+|+|++++|++..+++.|.++++... .....+||+++|+|+++++||.++.++|.+|+|.+|++++
T Consensus 4 ~~i~viG~~~~D~~~~~~~~~~~~~~~~~-----------~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~G~~l~ 72 (317)
T 2nwh_A 4 KKILVLGGAHIDRRGMIETETAPGASNPG-----------SWMEEAGGGGFNAARNLSRLGFEVRIIAPRGGDVTGEVVA 72 (317)
T ss_dssp CEEEEESCCEEEEEEEESSSCCTTSCCCE-----------EEEEEEECHHHHHHHHHHHTTCEEEEECEEESSHHHHHHH
T ss_pred CeEEEECchheEEeeccCCCCCCCCCceE-----------eEEEeCCcHHHHHHHHHHhcCCCcEEEEeecCCchHHHHH
Confidence 47999999999999998877776654211 1234679999999999999999999999999999999999
Q ss_pred HHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccC-CCCCCchhhhhhcccHHHHhhccCCcEEEEe
Q 017305 162 DVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRA-DFSKEPAFSWMNKLSAEVKTAIKHSKVLFCN 240 (374)
Q Consensus 162 ~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~-~~~~~~~~~~~~~l~~~~~~~l~~~~~v~~~ 240 (374)
+.|+++||++++ .+.++. +|+.++++++++|++.+.... ........+.++.. .+.+.+..++++|++
T Consensus 73 ~~L~~~gV~~~~-~~~~~~--------~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~ 141 (317)
T 2nwh_A 73 EAARQAGVEDTP-FTFLDR--------RTPSYTAILERDGNLVIALADMDLYKLFTPRRLKVR--AVREAIIASDFLLCD 141 (317)
T ss_dssp HHHHHTTCEECC-EEETTS--------CCCEEEEEECTTSCEEEEEEECGGGGGCCHHHHTSH--HHHHHHHHCSEEEEE
T ss_pred HHHHHcCCCCCC-cccCCC--------CCceEEEEEcCCCCEEEEEcchHHHhhCCHHHhhhh--hhhhHhccCCEEEEe
Confidence 999999999998 444443 388999999988998754321 11000000111100 011457789999998
Q ss_pred cCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCC--CCHHHHH
Q 017305 241 GYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGL--RNPITAG 318 (374)
Q Consensus 241 g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~--~~~~~~~ 318 (374)
+ ..+.+.+..+++.+++.|+++++|++... ..+.+.++++++|++++|++|++.|+|. ++.++++
T Consensus 142 ~----~~~~~~~~~~~~~a~~~g~~v~~Dp~~~~---------~~~~~~~ll~~~dil~~N~~E~~~l~g~~~~~~~~~~ 208 (317)
T 2nwh_A 142 A----NLPEDTLTALGLIARACEKPLAAIAISPA---------KAVKLKAALGDIDILFMNEAEARALTGETAENVRDWP 208 (317)
T ss_dssp T----TSCHHHHHHHHHHHHHTTCCEEEECCSHH---------HHGGGTTTGGGCSEEEEEHHHHHHHHC-----CTTHH
T ss_pred C----CCCHHHHHHHHHHHHhcCCeEEEeCCCHH---------HHHHHHHHhhhCeEecCCHHHHHHHhCCChhHHHHHH
Confidence 4 45678899999999999999999997421 1233467889999999999999999986 4566788
Q ss_pred HHHHHcCCCccEEEEEcCCCceEEEeCCc-eEEecCceeeeecccchhhhhcCCC
Q 017305 319 QELLRKGLRTKWVVVKMGPRGSILVTKSS-ISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 319 ~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~-~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
+.|++.|+ +.||||+|++|++++++++ .+++|+++++++||||+||+|.+|+
T Consensus 209 ~~l~~~g~--~~vvvt~G~~G~~~~~~~~~~~~~~~~~v~~vdt~GAGDaf~a~~ 261 (317)
T 2nwh_A 209 NILRKAGL--SGGVVTRGASEVVAFNGTEKAILHPPLIREVKDVTGAGDAMASGY 261 (317)
T ss_dssp HHHHHTTC--CCEEEEETTTEEEEECSSCEEEECCCCSSSCSCCCCSSHHHHHHH
T ss_pred HHHHHcCC--CEEEEEECCCcEEEEcCCCceEEeCCCCccccCCCChhHHHHHHH
Confidence 88998887 7899999999999987664 6899999999999999999998764
No 32
>3cqd_A 6-phosphofructokinase isozyme 2; phosphofructokinases, PFK-2, glycolysis, transferase; HET: ATP; 1.98A {Escherichia coli} PDB: 3n1c_A*
Probab=100.00 E-value=1.9e-35 Score=276.45 Aligned_cols=250 Identities=20% Similarity=0.168 Sum_probs=195.3
Q ss_pred cEE-EECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHHHH
Q 017305 83 DVA-TLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLL 161 (374)
Q Consensus 83 ~vl-viG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~ 161 (374)
+|+ +.|++++|+++.+++ |.+|+..+. ......+||+++|+|+++++||.++.++|.+|+| +|++++
T Consensus 3 ~I~~v~g~~~~D~~~~~~~-~~~g~~~~~----------~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~d-~g~~i~ 70 (309)
T 3cqd_A 3 RIYTLTLAPSLDSATITPQ-IYPEGKLRC----------TAPVFEPGGGGINVARAIAHLGGSATAIFPAGGA-TGEHLV 70 (309)
T ss_dssp CEEEECSSCEEEEEEEESC-CCSSSEEEC----------CCCEEEEESHHHHHHHHHHHTTCCEEEEEEECHH-HHHHHH
T ss_pred eEEEEeccchheEEEEcCC-CcCCCeeec----------cceeecCCchHHHHHHHHHHcCCCeEEEEEecCc-hHHHHH
Confidence 466 557999999999988 566654321 1345567999999999999999999999999998 999999
Q ss_pred HHHHhcCCcccceeeCCCCCcccCCCccceeEEEE-ECCCCCccccccCCCCCCchhhhhhcccHHHHhhccCCcEEEEe
Q 017305 162 DVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVL-VDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCN 240 (374)
Q Consensus 162 ~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~-~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~~~ 240 (374)
+.|+++||+++++.+.++ |++++++ ++++|+++++...+....+ ..++.+.+.+.+.+++ +++|++
T Consensus 71 ~~l~~~gv~~~~v~~~~~----------t~~~~~~~~~~~g~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~-~~v~~~ 137 (309)
T 3cqd_A 71 SLLADENVPVATVEAKDW----------TRQNLHVHVEASGEQYRFVMPGAALNE--DEFRQLEEQVLEIESG-AILVIS 137 (309)
T ss_dssp HHHHHTTCCEEEEECSSC----------CCCCEEEEETTTCCEEEEECCCCCCCH--HHHHHHHHHHHTSCTT-CEEEEE
T ss_pred HHHHHcCCCceeEEcCCC----------CeeEEEEEEcCCCCEEEEEcCCCCCCH--HHHHHHHHHHHHhhcC-CEEEEE
Confidence 999999999999876543 3444556 7888888665443322111 1122222223345778 999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHh-hhccC-cEEecCHHHHHHhhCCC-----C
Q 017305 241 GYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSY-FLSTS-DVLLLTSDEAESLTGLR-----N 313 (374)
Q Consensus 241 g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~-ll~~~-Dil~~N~~Ea~~l~g~~-----~ 313 (374)
|+.....+.+.+.++++.+++.|.++++|+++. .+.+ +.+++ |++++|++|++.|+|.. +
T Consensus 138 g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~-------------~~~~~l~~~~~dil~~N~~E~~~l~g~~~~~~~~ 204 (309)
T 3cqd_A 138 GSLPPGVKLEKLTQLISAAQKQGIRCIVDSSGE-------------ALSAALAIGNIELVKPNQKELSALVNRELTQPDD 204 (309)
T ss_dssp SCCCTTCCHHHHHHHHHHHHTTTCEEEEECCHH-------------HHHHHTTTCCBSEECCBHHHHHHHHTSCCCSTTH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCeEEEECChH-------------HHHHHHHhCCCEEEeeCHHHHHHHhCCCCCCHHH
Confidence 987656677889999999999999999999732 1233 33788 99999999999999863 4
Q ss_pred HHHHHHHHHHcC-CCccEEEEEcCCCceEEEeCCceEEecCceeeeecccchhhhhcCCC
Q 017305 314 PITAGQELLRKG-LRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 314 ~~~~~~~l~~~g-~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
..++++.|++.| + +.||||+|++|++++++++.+++|+++++++||||+||+|.+|+
T Consensus 205 ~~~~~~~l~~~g~~--~~vvvt~G~~G~~~~~~~~~~~~~~~~v~~vdttGAGDaf~a~~ 262 (309)
T 3cqd_A 205 VRKAAQEIVNSGKA--KRVVVSLGPQGALGVDSENCIQVVPPPVKSQSTVGAGDSMVGAM 262 (309)
T ss_dssp HHHHHHHHHHTTSB--SCEEEECGGGCEEEECSSCEEEECCCSCCCCCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC--CEEEEEecCCceEEEECCceEEEeCCccccCCCcCcHHHHHHHH
Confidence 667888999987 6 78999999999999988888899999999999999999998764
No 33
>2ajr_A Sugar kinase, PFKB family; TM0828, possible 1-phosphofructokinase (EC 2.7.1.56), struct genomics, joint center for structural genomics, JCSG; HET: MSE; 2.46A {Thermotoga maritima} SCOP: c.72.1.1
Probab=100.00 E-value=3.5e-36 Score=284.26 Aligned_cols=256 Identities=16% Similarity=0.143 Sum_probs=198.7
Q ss_pred CCccEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHH
Q 017305 80 KSIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRF 159 (374)
Q Consensus 80 ~~~~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~ 159 (374)
..|.++|+|++++|+++.+++ |.++++.+.. ++......+||+++|+|+++++||.++.++|.+|+| +|++
T Consensus 11 ~~~~~~v~G~~~vD~~~~~~~-~~~g~~~~~s-------~~~~~~~~~GG~~~NvA~~la~LG~~~~~~~~vG~d-~G~~ 81 (331)
T 2ajr_A 11 HHMVLTVTLNPALDREIFIED-FQVNRLYRIN-------DLSKTQMSPGGKGINVSIALSKLGVPSVATGFVGGY-MGKI 81 (331)
T ss_dssp -CCEEEEESSCEEEEEEECTT-CCSSCEEECC-------SGGGEEEEEESHHHHHHHHHHHTTCCEEEEEEEEHH-HHHH
T ss_pred cceEEEEecchHHeEEEEcCC-ccCCceEEec-------cccceEEecCcHHHHHHHHHHHcCCCeEEEEEecCc-hHHH
Confidence 346899999999999999998 6777654210 001234567999999999999999999999999998 9999
Q ss_pred HHHHHHhcC--CcccceeeCCCCCcccCCCccceeEEEEECCCCCc-cccccCCCCCCchhhhhhcccHHHHhhccCCcE
Q 017305 160 LLDVLQDEG--IGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRH-GFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKV 236 (374)
Q Consensus 160 i~~~L~~~G--Vd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r-~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 236 (374)
+++.|+++| |+++++.+.++ |++++++++++|++ +++...+....+ +.++.+.+.+.+.+.++++
T Consensus 82 i~~~L~~~g~~V~~~~v~~~~~----------t~~~~~~v~~~g~~~~~~~~~g~~l~~--~~~~~~~~~~~~~~~~~~~ 149 (331)
T 2ajr_A 82 LVEELRKISKLITTNFVYVEGE----------TRENIEIIDEKNKTITAINFPGPDVTD--MDVNHFLRRYKMTLSKVDC 149 (331)
T ss_dssp HHHHHHHHCTTEEEEEEEESSC----------CEEEEEEEETTTTEEEEEECCCCCCCH--HHHHHHHHHHHHHHTTCSE
T ss_pred HHHHHHHcCCccceEEEEcCCC----------CeEEEEEEeCCCceEEEEeCCCCCCCH--HHHHHHHHHHHHhcccCCE
Confidence 999999999 99999876543 56667777778888 554433221111 1111111223345788999
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcc---CcEEecCHHH-HHHhhCCC
Q 017305 237 LFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLST---SDVLLLTSDE-AESLTGLR 312 (374)
Q Consensus 237 v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~---~Dil~~N~~E-a~~l~g~~ 312 (374)
+|++|+.....+.+.+.++++.+++.|+++++|+++. .+.+++++ +|++++|++| ++.|+|..
T Consensus 150 v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~-------------~~~~~l~~~~~~dil~~N~~E~~~~l~g~~ 216 (331)
T 2ajr_A 150 VVISGSIPPGVNEGICNELVRLARERGVFVFVEQTPR-------------LLERIYEGPEFPNVVKPDLRGNHASFLGVD 216 (331)
T ss_dssp EEEESCCCTTSCTTHHHHHHHHHHHTTCEEEEECCHH-------------HHHHHHHSSCCCSEECCCCTTCCSCBTTBC
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECChH-------------HHHHHHhcCCCCeEEEeCccchHHHHhCCC
Confidence 9999876545556788899999999999999999731 23455554 9999999999 99998863
Q ss_pred -----CHHHHHHHHHHcCCCccEEEEEcCCCceEEEeCCceEEec-CceeeeecccchhhhhcCCC
Q 017305 313 -----NPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAP-AFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 313 -----~~~~~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~p-a~~v~vVDttGagdaf~~G~ 372 (374)
+.+++++.|+++ + +.||||+|++|++++++++.+++| +++++++||||+||+|.+|+
T Consensus 217 ~~~~~~~~~~~~~l~~~-~--~~vvvT~G~~Ga~~~~~~~~~~~~~~~~v~vvDttGAGDaF~ag~ 279 (331)
T 2ajr_A 217 LKTFDDYVKLAEKLAEK-S--QVSVVSYEVKNDIVATREGVWLIRSKEEIDTSHLLGAGDAYVAGM 279 (331)
T ss_dssp CCSHHHHHHHHHHHHHH-S--SEEEEEETTTEEEEECSSCEEEEEESSCCCGGGCTTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh-c--CEEEEeecCCceEEEeCCcEEEEecCCcccccCCCchHHHHHHHH
Confidence 355678888887 6 789999999999999888888999 99999999999999998765
No 34
>2f02_A Tagatose-6-phosphate kinase; LACC, structural genomics, PSI, protein structure initiative YORK SGX research center for structural genomics; HET: ATP; 1.90A {Enterococcus faecalis} SCOP: c.72.1.1 PDB: 2awd_A*
Probab=100.00 E-value=7.6e-36 Score=280.98 Aligned_cols=251 Identities=17% Similarity=0.158 Sum_probs=195.5
Q ss_pred ccEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHHHH
Q 017305 82 IDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLL 161 (374)
Q Consensus 82 ~~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~ 161 (374)
|+++|+|++++|+++.+++ |..|+..+. . .....+||+++|+|+++++||.++.++|.+|+ .+|++++
T Consensus 3 m~i~v~g~~~~D~~~~v~~-~~~g~~~~~---~-------~~~~~~GG~~~NvA~~la~LG~~~~~~~~vG~-~~G~~i~ 70 (323)
T 2f02_A 3 LIVTVTMNPSIDISYLLDH-LKLDTVNRT---S-------QVTKTPGGKGLNVTRVIHDLGGDVIATGVLGG-FHGAFIA 70 (323)
T ss_dssp CEEEEESSCEEEEEEECSC-CCTTSEEEE---S-------CEEEEEESHHHHHHHHHHHHTCCEEEEEEEEH-HHHHHHH
T ss_pred eEEEEecCceeEEEEecCC-cccCCEEEe---c-------eEEEcCCcHHHHHHHHHHHcCCCeEEEEEecc-chHHHHH
Confidence 5899999999999999998 666664321 1 23456799999999999999999999999997 5999999
Q ss_pred HHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcccHHHHhhccCCcEEEEec
Q 017305 162 DVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNG 241 (374)
Q Consensus 162 ~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~~~g 241 (374)
+.|+++||+++++.+.++ |++++++++++ +++++...+....+ +.++.+.+.+.+.+.+++++|++|
T Consensus 71 ~~L~~~gV~~~~v~~~~~----------t~~~~~~~~~~-~~~~~~~~g~~l~~--~~~~~~~~~~~~~~~~~~~v~~~g 137 (323)
T 2f02_A 71 NELKKANIPQAFTSIKEE----------TRDSIAILHEG-NQTEILEAGPTVSP--EEISNFLENFDQLIKQAEIVTISG 137 (323)
T ss_dssp HHHHHTTCCBCCEEESSC----------CEEEEEEEETT-EEEEEEECCCBCCH--HHHHHHHHHHHHHHTTCSEEEEES
T ss_pred HHHHHCCCceeEEEcCCC----------CeeEEEEEcCC-CeEEEECCCCCCCH--HHHHHHHHHHHHhccCCCEEEEEC
Confidence 999999999999876543 55666677765 66554433221111 111112122334568999999998
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhh---ccCcEEecCHHHHHHhhCCC------
Q 017305 242 YGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFL---STSDVLLLTSDEAESLTGLR------ 312 (374)
Q Consensus 242 ~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll---~~~Dil~~N~~Ea~~l~g~~------ 312 (374)
+.....+.+.+.++++.+++.|+++++|+++. .+.+++ +++|++++|++|++.|+|..
T Consensus 138 ~~~~~~~~~~~~~~~~~a~~~g~~v~~Dp~~~-------------~~~~~l~~~~~~dil~~N~~E~~~l~g~~~~~~~~ 204 (323)
T 2f02_A 138 SLAKGLPSDFYQELVQKAHAQEVKVLLDTSGD-------------SLRQVLQGPWKPYLIKPNLEELEGLLGQDFSENPL 204 (323)
T ss_dssp CCCBTSCTTHHHHHHHHHHHTTCEEEEECCTH-------------HHHHHHHSSCCCSEECCBHHHHHHHHTCCCCSSCH
T ss_pred CCCCCCChHHHHHHHHHHHHCCCEEEEECChH-------------HHHHHHhccCCCeEEecCHHHHHHHhCCCCCCCcH
Confidence 86554556788899999999999999999742 134455 58999999999999999864
Q ss_pred -CHHHHHHHHHHcCCCccEEEEEcCCCceEEEeCCceEEecCceeeeecccchhhhhcCCC
Q 017305 313 -NPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 313 -~~~~~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
+..++++.|+++|+ +.||||+|++|++++++++.+++|+++++++||||+||+|.+|+
T Consensus 205 ~~~~~~~~~l~~~g~--~~vvvt~G~~G~~~~~~~~~~~~~~~~v~vvdttGAGDaF~a~~ 263 (323)
T 2f02_A 205 AAVQTALTKPMFAGI--EWIVISLGKDGAIAKHHDQFYRVKIPTIQAKNPVGSGDATIAGL 263 (323)
T ss_dssp HHHHHHHTSGGGTTC--SEEEEECGGGCEEEEETTEEEEEECCCCCCSCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC--CEEEEeecCCceEEEeCCCEEEEcCCCccccCCccHHHHHHHHH
Confidence 23456777888776 78999999999999988888999999999999999999998764
No 35
>3ie7_A LIN2199 protein; phosphofructokinases, transferase, glycero ION, PSI-II, NYSGXRC, kinase, structural genomics, structure initiative; HET: ATP; 1.60A {Listeria innocua} PDB: 3hic_A* 3jul_A* 3q1y_A
Probab=100.00 E-value=2.6e-35 Score=276.94 Aligned_cols=251 Identities=15% Similarity=0.156 Sum_probs=200.1
Q ss_pred ccEEEECCeeEEE-eecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHHH
Q 017305 82 IDVATLGNLCVDI-VLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFL 160 (374)
Q Consensus 82 ~~vlviG~~~~D~-i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i 160 (374)
|-+.|.+++++|+ ++.++++ ..|+..+. . .....+||+++|+|+++++||.++.++|.+|+| +|+++
T Consensus 3 mi~tvt~np~iD~~~~~v~~~-~~g~~~~~---~-------~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~d-~g~~i 70 (320)
T 3ie7_A 3 LIYTITLNPAIDRLLFIRGEL-EKRKTNRV---I-------KTEFDCGGKGLHVSGVLSKFGIKNEALGIAGSD-NLDKL 70 (320)
T ss_dssp CEEEEESSCEEEEEEEESSSC-CTTSCCCC---S-------EEEEEEESHHHHHHHHHHHHTCCEEEEEEEEST-THHHH
T ss_pred eEEEEecchHHeeeEEEcCCc-cCCCeeEe---c-------eeeecCCchHHHHHHHHHHcCCCeEEEEEecCc-hHHHH
Confidence 4688889999999 9999998 66654321 1 234567999999999999999999999999998 99999
Q ss_pred HHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCC--ccccccCCCCCCchhhhhhcccHHHHhhccCCcEEE
Q 017305 161 LDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQR--HGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLF 238 (374)
Q Consensus 161 ~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~--r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~ 238 (374)
++.|+++||+++++...++ +|+.++++++ +|+ |+++...+.... .+.++.+.+.+.+.+.+++++|
T Consensus 71 ~~~l~~~gv~~~~v~~~~~---------~t~~~~~~~~-~g~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~v~ 138 (320)
T 3ie7_A 71 YAILKEKHINHDFLVEAGT---------STRECFVVLS-DDTNGSTMIPEAGFTVS--QTNKDNLLKQIAKKVKKEDMVV 138 (320)
T ss_dssp HHHHHHTTCCBCCEEETTC---------CCEEEEEEEE-TTCSCCEEEECCCCCCC--HHHHHHHHHHHHHHCCTTCEEE
T ss_pred HHHHHHcCCceEEEEecCC---------CCceEEEEEE-CCCceeEEEeCCCCCCC--HHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999844333 2788888888 777 777654432211 1222222233456788999999
Q ss_pred EecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhc-cCcEEecCHHHHHHhhCCCC--HH
Q 017305 239 CNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLS-TSDVLLLTSDEAESLTGLRN--PI 315 (374)
Q Consensus 239 ~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~-~~Dil~~N~~Ea~~l~g~~~--~~ 315 (374)
++|+.....+.+.+.++++.+++.|+++++|+++. .+.+.+. ++|++++|++|++.|+|... ..
T Consensus 139 ~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~-------------~l~~~l~~~~dil~~N~~E~~~l~g~~~~~~~ 205 (320)
T 3ie7_A 139 IAGSPPPHYTLSDFKELLRTVKATGAFLGCDNSGE-------------YLNLAVEMGVDFIKPNEDEVIAILDEKTNSLE 205 (320)
T ss_dssp EESCCCTTCCHHHHHHHHHHHHHHTCEEEEECCHH-------------HHHHHHHHCCSEECCBTTGGGGGSCTTCCCHH
T ss_pred EeCCCCCCCCHHHHHHHHHHHHhcCCEEEEECChH-------------HHHHHHhcCCeEEeeCHHHHHHHhCCCcCCCH
Confidence 99987666778899999999999999999999732 2345554 89999999999999999763 24
Q ss_pred HHHHHHHHcCCCccEEEEEcCCCceEEEeCCceEEecCceeeeecccchhhhhcCCC
Q 017305 316 TAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 316 ~~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
+.+.++.+. + +.||||+|++|++++++++.+++|+++++++||||+||+|.+|+
T Consensus 206 ~~~~~~~~~-~--~~vvvt~G~~G~~~~~~~~~~~~~~~~v~vvdttGAGDaF~ag~ 259 (320)
T 3ie7_A 206 ENIRTLAEK-I--PYLVVSLGAKGSICAHNGKLYQVIPPKVQERNDTGAGDVFVGAF 259 (320)
T ss_dssp HHHHHHTTT-C--SEEEEECGGGCEEEEETTEEEEEECCCCCCSCCTTHHHHHHHHH
T ss_pred HHHHHHHhh-C--CEEEEEcCCCceEEEeCCcEEEEeCCccCCCCCcCchHHHHHHH
Confidence 455555555 4 88999999999999999999999999999999999999998775
No 36
>2hlz_A Ketohexokinase; non-protein kinase, creatine kinase, fructokinase, isoform A, structural genomics, structural genomics consortium, SGC transferase; 1.85A {Homo sapiens} PDB: 2hqq_A 2hw1_A* 3nbv_A* 3nbw_A* 3nc2_A* 3nc9_A* 3nca_A* 3q92_A* 3qa2_A* 3qai_A* 3ro4_A* 3b3l_A
Probab=100.00 E-value=4.7e-35 Score=274.30 Aligned_cols=251 Identities=14% Similarity=0.168 Sum_probs=193.5
Q ss_pred CCCccEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHH
Q 017305 79 VKSIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGR 158 (374)
Q Consensus 79 ~~~~~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~ 158 (374)
+++++|+|+|++++|++..++++|..++.... . .....+||+++|+|+++++||.++.++|.+|+|.+|+
T Consensus 15 ~~~~~i~viG~~~iD~~~~~~~~p~~~~~~~~---~-------~~~~~~GG~~~NvA~~la~LG~~v~~ig~vG~D~~G~ 84 (312)
T 2hlz_A 15 PRGSQILCVGLVVLDVISLVDKYPKEDSEIRC---L-------SQRWQRGGNASNSCTILSLLGAPCAFMGSMAPGHVAD 84 (312)
T ss_dssp --CCEEEEESCCEEEEEEEESSCCCTTCEEEC---S-------EEEEEEESHHHHHHHHHHHHTCCEEEEEEECSSHHHH
T ss_pred CCCCcEEEECcceEEEeeccccCCCccceeec---c-------cceeccCccHHHHHHHHHHcCCceEEEEEecCchHHH
Confidence 45678999999999999999998887654211 0 1234679999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEEC-CCCCccccccCCCCCCchhhhhhcccHHH-HhhccCCcE
Q 017305 159 FLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVD-PSQRHGFCSRADFSKEPAFSWMNKLSAEV-KTAIKHSKV 236 (374)
Q Consensus 159 ~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~-~~g~r~~~~~~~~~~~~~~~~~~~l~~~~-~~~l~~~~~ 236 (374)
++++.|+++||+++++.+.++. +|++++++++ ++|+|+++...+....... +++ ...++++++
T Consensus 85 ~l~~~L~~~GV~~~~v~~~~~~--------~T~~~~~~v~~~~g~r~~~~~~~~~~~~~~-------~~~~~~~l~~~~~ 149 (312)
T 2hlz_A 85 FVLDDLRRYSVDLRYTVFQTTG--------SVPIATVIINEASGSRTILYYDRSLPDVSA-------TDFEKVDLTQFKW 149 (312)
T ss_dssp HHHHHHHHTTCBCTTEEECSSC--------CCCEEEEEEETTTCCEEEEEECCCCCCCCH-------HHHHTSCGGGEEE
T ss_pred HHHHHHHHcCCCCccceeccCC--------CCCeEEEEEECCCCceEEEecCCccccCCH-------HHhhHhhhccCCE
Confidence 9999999999999998776443 2666666665 4788887654321111111 111 124678999
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHhc--------CCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHh
Q 017305 237 LFCNGYGFDELSPALIISALEYAAQV--------GTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESL 308 (374)
Q Consensus 237 v~~~g~~~~~~~~~~~~~~~~~a~~~--------g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l 308 (374)
+|++++ ..+...++++.+++. +.++++|+.... +.+.++++++|++++|++|++.+
T Consensus 150 v~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~~~~v~~d~~~~~-----------~~~~~~l~~~dil~~n~~ea~~l 213 (312)
T 2hlz_A 150 IHIEGR-----NASEQVKMLQRIDAHNTRQPPEQKIRVSVEVEKPR-----------EELFQLFGYGDVVFVSKDVAKHL 213 (312)
T ss_dssp EEEECS-----SHHHHHHHHHHHHHHHTTSCGGGCCEEEEEECSCC-----------GGGGGGGGSSSEEEECHHHHHHT
T ss_pred EEEecc-----CHHHHHHHHHHHHHhcccccCCCCeEEEEEcccch-----------HHHHHHHhcCCEEEEcHHHHHHc
Confidence 999975 356677788888776 678999987532 23467899999999999999987
Q ss_pred hCCCCHHHHHHHHHHcCC-CccEEEEEcCCCceEEEeC-CceEEecCce-eeeecccchhhhhcCCC
Q 017305 309 TGLRNPITAGQELLRKGL-RTKWVVVKMGPRGSILVTK-SSISCAPAFK-VLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 309 ~g~~~~~~~~~~l~~~g~-~~~~vvvT~G~~Ga~~~~~-~~~~~~pa~~-v~vVDttGagdaf~~G~ 372 (374)
|..+++++++.+.+.+. + +.||||+|++|++++++ ++.+++|+++ ++++||||+||+|.+|+
T Consensus 214 -g~~~~~~~~~~l~~~~~~g-~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~vvdt~GAGDaf~a~~ 278 (312)
T 2hlz_A 214 -GFQSAEEALRGLYGRVRKG-AVLVCAWAEEGADALGPDGKLLHSDAFPPPRVVDTLGAGDTFNASV 278 (312)
T ss_dssp -TCCSHHHHHHHHGGGSCTT-CEEEEECGGGCEEEECTTCCEEEECCCCCSSCCCCTTHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHhcCCC-CEEEEEecccCeEEEccCCCEEECCCCCCCCcccCCCchHHHHHHH
Confidence 77788888888887642 1 58999999999999875 4578899964 68999999999998764
No 37
>3umo_A 6-phosphofructokinase isozyme 2; glycolysis, transferase, PFK, enzyme; HET: ATP; 1.70A {Escherichia coli} PDB: 3n1c_A* 3cqd_A* 3ump_A* 3uqd_A* 3uqe_A*
Probab=100.00 E-value=6.4e-35 Score=272.90 Aligned_cols=250 Identities=21% Similarity=0.178 Sum_probs=196.7
Q ss_pred EEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHHHHHH
Q 017305 84 VATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDV 163 (374)
Q Consensus 84 vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~~~ 163 (374)
+.|.+++++|+++.++++ .+|++.+. ......+||+++|+|+++++||.++.++|.+|+| +|+++++.
T Consensus 5 ~~v~~n~~~D~~~~v~~~-~~g~~~~~----------~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~d-~g~~i~~~ 72 (309)
T 3umo_A 5 YTLTLAPSLDSATITPQI-YPEGKLRC----------TAPVFEPGGGGINVARAIAHLGGSATAIFPAGGA-TGEHLVSL 72 (309)
T ss_dssp EEECSSCEEEEEEEESCC-CSSSEEEC----------CCCEEEEESHHHHHHHHHHHTTCCEEEEEEECHH-HHHHHHHH
T ss_pred EEEecchhheEEEEcCcc-cCCCeEEe----------ceeeecCCchHHHHHHHHHHcCCCeEEEEEecCc-hHHHHHHH
Confidence 455578999999999998 66765421 1355678999999999999999999999999999 99999999
Q ss_pred HHhcCCcccceeeCCCCCcccCCCccceeEEE-EECCCCCccccccCCCCCCchhhhhhcccHHHHhhccCCcEEEEecC
Q 017305 164 LQDEGIGMVGMSEDTDGVDTSSASYETLLCWV-LVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGY 242 (374)
Q Consensus 164 L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i-~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~~~g~ 242 (374)
|+++||+++++..... |+.+++ +.+++|+++++...+....+ +.++.+.+. .+.+..++++|++|+
T Consensus 73 l~~~gv~~~~v~~~~~----------t~~~~~~~~~~~g~~~~~~~~g~~~~~--~~~~~~~~~-~~~~~~~~~~~~~g~ 139 (309)
T 3umo_A 73 LADENVPVATVEAKDW----------TRQNLHVHVEASGEQYRFVMPGAALNE--DEFRQLEEQ-VLEIESGAILVISGS 139 (309)
T ss_dssp HHHTTCCEEEEECSSC----------CCCCEEEEETTTCCEEEEECCCCCCCH--HHHHHHHHH-HTTSCTTCEEEEESC
T ss_pred HHHcCCceEEEEecCC----------CeeEEEEEECCCCcEEEEEcCCCCCCH--HHHHHHHHH-HHhcCCCCEEEEEcc
Confidence 9999999999876543 333333 33447888876554322111 111111111 122467889999998
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcc--CcEEecCHHHHHHhhCCC-----CHH
Q 017305 243 GFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLST--SDVLLLTSDEAESLTGLR-----NPI 315 (374)
Q Consensus 243 ~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~--~Dil~~N~~Ea~~l~g~~-----~~~ 315 (374)
.....+.+.+.++++.+++.|+++++|++. +.+.+++++ +|++++|++|++.|+|.. +.+
T Consensus 140 ~~~~~~~~~~~~~~~~a~~~~~~v~~D~~~-------------~~l~~~l~~~~~dil~~N~~E~~~l~g~~~~~~~~~~ 206 (309)
T 3umo_A 140 LPPGVKLEKLTQLISAAQKQGIRCIVDSSG-------------EALSAALAIGNIELVKPNQKELSALVNRELTQPDDVR 206 (309)
T ss_dssp CCTTCCHHHHHHHHHHHHHTTCEEEEECCH-------------HHHHHHTSSCCBSEECCBHHHHHHHHTSCCCSTTHHH
T ss_pred CCCCCCHHHHHHHHHHHHhcCCEEEEECCc-------------HHHHHHhccCCCeEEEeCHHHHHHHhCCCCCCHHHHH
Confidence 766778899999999999999999999963 235677877 499999999999999864 567
Q ss_pred HHHHHHHHcCCCccEEEEEcCCCceEEEeCCceEEecCceeeeecccchhhhhcCCC
Q 017305 316 TAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 316 ~~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
++++.|+++|. .+.||||+|++|++++++++.+++|+++++++||||+||+|.+|+
T Consensus 207 ~~~~~l~~~g~-~~~vvvt~G~~G~~~~~~~~~~~~~~~~v~vvdttGAGD~f~a~~ 262 (309)
T 3umo_A 207 KAAQEIVNSGK-AKRVVVSLGPQGALGVDSENCIQVVPPPVKSQSTVGAGDSMVGAM 262 (309)
T ss_dssp HHHHHHHHTTS-BSCEEEECGGGCEEEECSSCEEEECCCSCCCSCCTTHHHHHHHHH
T ss_pred HHHHHHHHcCC-CcEEEEEcCcccEEEEECCcEEEEeCCCcCCCCCcChHHHHHHHH
Confidence 88899999874 257999999999999998889999999999999999999998764
No 38
>2abs_A Adenosine kinase, AK; ribokinase fold, alpha/beta, intermediate conformation, signaling protein,transferase; HET: ACP; 1.10A {Toxoplasma gondii} SCOP: c.72.1.1 PDB: 2a9z_A* 2aa0_A* 2ab8_A* 2a9y_A* 1dgm_A* 1lio_A 1lii_A* 1lij_A* 1lik_A*
Probab=100.00 E-value=3e-35 Score=283.28 Aligned_cols=268 Identities=15% Similarity=0.186 Sum_probs=201.4
Q ss_pred CCCccEEEECCeeEEEeecCCC-C-----CCCchhhHHH-----HhhhhhcCCCCCccccCCcHHHHHHHHHHc---CCC
Q 017305 79 VKSIDVATLGNLCVDIVLNVPQ-L-----PPPSRDARKA-----YMDQLSASPPDKQYWEAGGNCNVAIAAARL---GLD 144 (374)
Q Consensus 79 ~~~~~vlviG~~~~D~i~~~~~-~-----p~~~~~~~~~-----~~~~~~~~~~~~~~~~GG~a~NvA~~larL---G~~ 144 (374)
.++++|+|+|++++|+++.+++ + |.+++.+... ....+ ........+||+++|+|+++++| |.+
T Consensus 30 ~~~~~vlviG~~~lD~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~--~~~~~~~~~GG~~~NvA~~la~Lg~~g~~ 107 (383)
T 2abs_A 30 TGPMRVFAIGNPILDLVAEVPSSFLDEFFLKRGDATLATPEQMRIYSTL--DQFNPTSLPGGSALNSVRVVQKLLRKPGS 107 (383)
T ss_dssp CCCCCEEEECCCEEEEEEECCHHHHHHTTCCTTCEEECCGGGGGGGGTG--GGGCCEEEEESHHHHHHHHHHHHHCSTTS
T ss_pred CCCceEEEECcchheeEeccCHHHHHhcCCCCCceeechhhHHHHHHhh--ccccceeeCCChHHHHHHHHHHhccCCCc
Confidence 3556899999999999999876 3 5555432100 00000 01134556899999999999999 899
Q ss_pred eEEEEEecCchhHHHHHHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhccc
Q 017305 145 CVTIGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLS 224 (374)
Q Consensus 145 ~~~v~~vG~D~~G~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~ 224 (374)
+.|+|.||+|.+|+++++.|+++||+++++.. ++. +|+.++++++ +|+|+++...+.. ..+. ..
T Consensus 108 v~~ig~vG~D~~G~~i~~~L~~~GV~~~~v~~-~~~--------~T~~~~~~~~-~g~r~~~~~~~a~-----~~l~-~~ 171 (383)
T 2abs_A 108 AGYMGAIGDDPRGQVLKELCDKEGLATRFMVA-PGQ--------STGVCAVLIN-EKERTLCTHLGAC-----GSFR-LP 171 (383)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHTCEEEEEEC-TTC--------CCEEEEEEEE-TTEEEEEEECGGG-----GGCC-CC
T ss_pred EEEEEEecCChhHHHHHHHHHHcCCceeeeec-CCC--------CCeEEEEEEc-CCceeEeeccChh-----hhCC-hh
Confidence 99999999999999999999999999999863 333 4889988887 6888765322111 1110 11
Q ss_pred HHHHhhccCCcEEEEecCCCCCCCHHHHHHHHHHHHh-cCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHH
Q 017305 225 AEVKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQ-VGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSD 303 (374)
Q Consensus 225 ~~~~~~l~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~-~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~ 303 (374)
+...+.+.+++++|++|+.+ ..+.+.+.++++.+++ .|+++++|+... +| .+..++.+.++++++|++++|++
T Consensus 172 ~~~~~~l~~~~~v~~~g~~~-~~~~~~~~~~~~~a~~~~g~~v~~d~~~~---~~--~~~~~~~l~~ll~~~dil~pN~~ 245 (383)
T 2abs_A 172 EDWTTFASGALIFYATAYTL-TATPKNALEVAGYAHGIPNAIFTLNLSAP---FC--VELYKDAMQSLLLHTNILFGNEE 245 (383)
T ss_dssp TTHHHHTTTCCEEEEEGGGG-TTCHHHHHHHHHHHHTSTTCEEEEECCCH---HH--HHHCHHHHHHHHHTCSEEEEEHH
T ss_pred hhhHHHhhcCCEEEEeeecc-cCCHHHHHHHHHHHHHhcCCEEEEeCCcH---HH--HHHHHHHHHHHHhhCCEEeCCHH
Confidence 23345678999999999875 3677889999999998 899999998743 22 12234567789999999999999
Q ss_pred HHHHhhCC-----------------CCHHHHHHHHHHc-------CCCccEEEEEcCCCceEEE-----eCCceEEecCc
Q 017305 304 EAESLTGL-----------------RNPITAGQELLRK-------GLRTKWVVVKMGPRGSILV-----TKSSISCAPAF 354 (374)
Q Consensus 304 Ea~~l~g~-----------------~~~~~~~~~l~~~-------g~~~~~vvvT~G~~Ga~~~-----~~~~~~~~pa~ 354 (374)
|++.|+|. ++.+++++.|++. |+ +.||||+|++|++++ .+++.+++|++
T Consensus 246 Ea~~L~g~~~~~~~~~~~~s~~~~~~~~~~~a~~l~~~~~~~~~~g~--~~VvvT~G~~Ga~~~~~~~~~~~~~~~~~~~ 323 (383)
T 2abs_A 246 EFAHLAKVHNLVAAEKTALSTANKEHAVEVCTGALRLLTAGQNTSAT--KLVVMTRGHNPVIAAEQTADGTVVVHEVGVP 323 (383)
T ss_dssp HHHHHHHHHTCC----------CHHHHHHHHHHHHHHHHTTCCCSSC--CEEEEECTTSCEEEEEECTTSCEEEEEECCC
T ss_pred HHHHHhcccCcccccccccccccccccHHHHHHHHHhccccccccCC--CEEEEEcCCCCeEEEEeecCCCCeEEEecCc
Confidence 99998753 1245677788773 66 789999999999998 56677889998
Q ss_pred ee---eeecccchhhhhcCCC
Q 017305 355 KV---LQLQWVVVLVGMWQPW 372 (374)
Q Consensus 355 ~v---~vVDttGagdaf~~G~ 372 (374)
++ ++|||||+||+|.+|+
T Consensus 324 ~v~~~~vvDttGAGDaF~ag~ 344 (383)
T 2abs_A 324 VVAAEKIVDTNGAGDAFVGGF 344 (383)
T ss_dssp CCCGGGCCCCTTHHHHHHHHH
T ss_pred cCCcCCcCcCCChHHHHHHHH
Confidence 77 8999999999998764
No 39
>2qhp_A Fructokinase; NP_810670.1, PFKB family carbohydrate kinase, structural genomics, joint center for structural genomics; HET: MSE; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=100.00 E-value=5.8e-35 Score=271.50 Aligned_cols=242 Identities=19% Similarity=0.227 Sum_probs=186.7
Q ss_pred ccEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHHHH
Q 017305 82 IDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLL 161 (374)
Q Consensus 82 ~~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~ 161 (374)
++|+|+|++++|++ |. + ..+||+++|+|+++++||.++.++|.+|+|.+|++++
T Consensus 4 ~~v~viG~~~~D~~------p~--~------------------~~~GG~~~N~A~~la~LG~~~~~~~~vG~D~~g~~~~ 57 (296)
T 2qhp_A 4 NIIVGMGEALWDVL------PE--G------------------KKIGGAPANFAYHVSQFGFDSRVVSAVGNDELGDEIM 57 (296)
T ss_dssp CEEEEESCCEEEEE------TT--E------------------EEEECHHHHHHHHHHHTTCEEEEEEEEESSHHHHHHH
T ss_pred ceEEEEchhheEec------CC--C------------------CCCCCHHHHHHHHHHHcCCCeeEEEEeCCChHHHHHH
Confidence 47999999999998 22 1 1359999999999999999999999999999999999
Q ss_pred HHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcccHHHHhhccCCcEEEEec
Q 017305 162 DVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNG 241 (374)
Q Consensus 162 ~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~~~g 241 (374)
+.|+++|| +++.+.++. +|+.+++.++++|+|.+....+. ....+. ..+...+.+++++++|+++
T Consensus 58 ~~l~~~gv--~~v~~~~~~--------~T~~~~v~~~~~g~~~~~~~~~~----~~~~l~-~~~~~~~~~~~~~~v~~g~ 122 (296)
T 2qhp_A 58 EVFKEKQL--KNQIERVDY--------PTGTVQVTLDDEGVPCYEIKEGV----AWDNIP-FTDELKRLALNTRAVCFGS 122 (296)
T ss_dssp HHHHHTTC--CEEEEEESS--------CCEEEEEC------CCEEECSSC----GGGCCC-CCHHHHHHHHTEEEEEECS
T ss_pred HHHHHcCC--CEEeecCCC--------CceEEEEEECCCCCEEEEEecCC----hhhhCC-cchhhHhhhcCCCEEEECC
Confidence 99999999 677665443 48888888888888776543221 111110 1234455678899999976
Q ss_pred CCC-CCCCHHHHHHHHHHHHh-cCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCC-----CCH
Q 017305 242 YGF-DELSPALIISALEYAAQ-VGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGL-----RNP 314 (374)
Q Consensus 242 ~~~-~~~~~~~~~~~~~~a~~-~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~-----~~~ 314 (374)
+.. .+.+.+.+.++++.+++ .+.++++|++.+.. +|. .+.+.++++++|++++|++|++.|+|. +++
T Consensus 123 ~~~~~~~~~~~~~~~~~~a~~~~~~~v~~D~~~~~~-~~~-----~~~~~~~l~~~dil~~N~~E~~~l~g~~~~~~~~~ 196 (296)
T 2qhp_A 123 LAQRNEVSRATINRFLDTMPDIDGQLKIFDINLRQD-FYT-----KEVLRESFKRCNILKINDEELVTISRMFGYPGIDL 196 (296)
T ss_dssp GGGSSHHHHHHHHHHHHHSCCTTSCEEEEECCCCTT-CCC-----HHHHHHHHHHCSEEEEEHHHHHHHHHHTTCTTSCH
T ss_pred hHhcChHHHHHHHHHHHHHHhcCCCEEEEECcCCcc-ccC-----HHHHHHHHHHCCEEECCHHHHHHHhcccCCCCCCH
Confidence 543 22345678888888876 68999999987653 331 245678899999999999999999873 467
Q ss_pred HHHHHHHHHc-CCCccEEEEEcCCCceEEEeCCceEEecCceeeeecccchhhhhcCCC
Q 017305 315 ITAGQELLRK-GLRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 315 ~~~~~~l~~~-g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
+++++.++++ |+ +.||||+|++|++++++++.+++|+++++++||||+||+|.+|+
T Consensus 197 ~~~~~~l~~~~g~--~~vvvt~G~~G~~~~~~~~~~~~~~~~v~~vdttGAGD~f~a~~ 253 (296)
T 2qhp_A 197 QDKCWILLAKYNL--KMLILTCGINGSYVFTPGVVSFQETPKVPVADTVGAGDSFTAAF 253 (296)
T ss_dssp HHHHHHHHHHTTC--SEEEEECGGGCEEEEETTEEEEECCCCCCCSCCTTHHHHHHHHH
T ss_pred HHHHHHHHHhcCC--CEEEEeecCCCeEEEECCeEEEeCCCCCccccCCCchHHHHHHH
Confidence 8889999885 76 78999999999999988889999999999999999999998764
No 40
>2abq_A Fructose 1-phosphate kinase; dimer, structural genomics, PSI, protein structure initiative; 2.10A {Bacillus halodurans} SCOP: c.72.1.1
Probab=100.00 E-value=1.3e-34 Score=270.49 Aligned_cols=248 Identities=16% Similarity=0.189 Sum_probs=194.3
Q ss_pred cEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHHHHH
Q 017305 83 DVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLD 162 (374)
Q Consensus 83 ~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~~ 162 (374)
-+.+.|++++|+++.++++ ..|+.... . .....+||+++|+|+++++||.++.++|.+|+ .+|+++++
T Consensus 2 i~tv~~n~~~D~~~~~~~~-~~g~~~~~---~-------~~~~~~GG~~~N~A~~la~LG~~~~~~~~vG~-~~g~~i~~ 69 (306)
T 2abq_A 2 IYTVTLNPSIDYIVQVENF-QQGVVNRS---E-------RDRKQPGGKGINVSRVLKRLGHETKALGFLGG-FTGAYVRN 69 (306)
T ss_dssp EEEEESSCEEEEEEECTTC-CSSSEEEC---S-------EEEEEEECHHHHHHHHHHHTTCCCEEEEEEEH-HHHHHHHH
T ss_pred EEEEecCchheEEEEcCCc-ccCCeEEe---c-------eeEecCCchHHHHHHHHHHcCCCceEEEEecc-hhHHHHHH
Confidence 4788899999999999986 55654321 1 23456799999999999999999999999998 79999999
Q ss_pred HHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcccHHHHhhccCCcEEEEecC
Q 017305 163 VLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGY 242 (374)
Q Consensus 163 ~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~~~g~ 242 (374)
.|+++||+++++...++ |+.++++ ++|+++++...+....+ +.++.+.+.+. .+++++++|++|+
T Consensus 70 ~L~~~gv~~~~v~~~~~----------t~~~~~~--~~g~~~~~~~~g~~~~~--~~~~~~~~~~~-~~~~~~~v~~~g~ 134 (306)
T 2abq_A 70 ALEKEEIGLSFIEVEGD----------TRINVKI--KGKQETELNGTAPLIKK--EHVQALLEQLT-ELEKGDVLVLAGS 134 (306)
T ss_dssp HHHHTTCEECCEEESSC----------CEEEEEE--ESSSCEEEBCCCCCCCH--HHHHHHHHHHT-TCCTTCEEEEESC
T ss_pred HHHHcCCceEEEEcCCC----------CceEEEE--eCCceEEEECCCCCCCH--HHHHHHHHHHH-hccCCCEEEEecC
Confidence 99999999999876542 4555554 46887654433221111 11111111111 1678999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhc-cCcEEecCHHHHHHhhCCC-----CHHH
Q 017305 243 GFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLS-TSDVLLLTSDEAESLTGLR-----NPIT 316 (374)
Q Consensus 243 ~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~-~~Dil~~N~~Ea~~l~g~~-----~~~~ 316 (374)
.....+.+.+.++++.+++.|.++++|+++ +.+.++++ ++|++++|++|++.|+|.. +..+
T Consensus 135 ~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~-------------~~~~~~l~~~~dil~~N~~E~~~l~g~~~~~~~~~~~ 201 (306)
T 2abq_A 135 VPQAMPQTIYRSMTQIAKERGAFVAVDTSG-------------EALHEVLAAKPSFIKPNHHELSELVSKPIASIEDAIP 201 (306)
T ss_dssp CCTTSCTTHHHHHHHHHHTTTCEEEEECCH-------------HHHHHHGGGCCSEECCBHHHHHHHHTSCCCSHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhcCCEEEEECCh-------------HHHHHHHhcCCcEEecCHHHHHHHhCCCCCCHHHHHH
Confidence 765566688889999999999999999873 23467888 9999999999999999873 4556
Q ss_pred HHHHHHHcCCCccEEEEEcCCCceEEEeCCceEEecCceeeeecccchhhhhcCCC
Q 017305 317 AGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 317 ~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
+++.|+++|+ +.||||+|++|++++.+++.+++|+++++++||||+||+|.+|+
T Consensus 202 ~~~~l~~~g~--~~vvvt~G~~G~~~~~~~~~~~~~~~~v~vvdttGAGDaF~a~~ 255 (306)
T 2abq_A 202 HVQRLIGEGI--ESILVSFAGDGALFASAEGMFHVNVPSGEVRNSVGAGDSVVAGF 255 (306)
T ss_dssp HHHHHHHTTC--CEEEEECGGGCEEEEETTEEEEECCCCCCCCCCSSHHHHHHHHH
T ss_pred HHHHHHHcCC--CEEEEecCCCceEEEeCCCEEEEeCCCccccCCccHHHHHHHHH
Confidence 7888888877 78999999999999988888899999999999999999998764
No 41
>3uq6_A Adenosine kinase, putative; ribokinase, transferase; HET: ADN AMP; 2.30A {Schistosoma mansoni} PDB: 3uq9_A*
Probab=100.00 E-value=5.6e-35 Score=280.26 Aligned_cols=275 Identities=13% Similarity=0.148 Sum_probs=199.3
Q ss_pred CCCccEEEECCeeEEEeecCCC-------CCCCc-----hhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCC--
Q 017305 79 VKSIDVATLGNLCVDIVLNVPQ-------LPPPS-----RDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLD-- 144 (374)
Q Consensus 79 ~~~~~vlviG~~~~D~i~~~~~-------~p~~~-----~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~-- 144 (374)
+....|++||++.+|++..+++ +++.. ++.. .....+... ...++.+||+++|+|+++++||.+
T Consensus 24 ~~~~~v~giGnalvDi~~~v~d~~l~~~~l~kg~m~l~~~~~~-~~~~~~~~~-~~~~~~~GGsa~N~a~~la~LG~~~~ 101 (372)
T 3uq6_A 24 LSEGYVFGMGNPLLDIIVDADDFMYRKYNLKKDNIVLAEEKHM-TIYDEIQKK-KKLNYIAGGATLNTVKMIQWIIQKPF 101 (372)
T ss_dssp CCTTCEEEEECCEEEEEEECCTHHHHHTTCCTTEEEECCGGGT-THHHHHHTS-SSCEEEECCHHHHHHHHHHHHHCSTT
T ss_pred CCCCeEEEECCceeeEEEEeCHHHHHHcCCCCCceEEcCHHHH-HHHHHHhcc-CCeEEeCCcHHHHHHHHHHHcCCCCC
Confidence 3444699999999999999874 23221 1111 111222222 145567899999999999999975
Q ss_pred -eEEEEEecCchhHHHHHHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcc
Q 017305 145 -CVTIGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKL 223 (374)
Q Consensus 145 -~~~v~~vG~D~~G~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l 223 (374)
+.|+|+||+|.+|+++++.|++.||+++++...++. +|+.++++++ +|+|+++.+.+.......++++
T Consensus 102 ~~~fiG~VG~D~~G~~l~~~L~~~GV~~~~~~~~~~~--------~T~~~~v~~~-dgert~~~~~ga~~~l~~~~i~-- 170 (372)
T 3uq6_A 102 VCSYVGCIGADIQGKYIKNDCSALDLVTEFQIAEEPL--------MTGKVAVLVS-EKLRSMVTYLGAACDLSLAHIE-- 170 (372)
T ss_dssp SEEEEEEECSSHHHHHHHHHHHHTTCEECCEECCTTC--------CEEEEEEEEC-SSCEEEEEEEEGGGGCCHHHHT--
T ss_pred cEEEEeeecCCHHHHHHHHHHHHcCCCceeeeecCCC--------CceEEEEEcC-CCceEEEEeccchhhcchhhhh--
Confidence 899999999999999999999999999988776654 3888888876 7899887543221111111111
Q ss_pred cHHHHhhccCCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHH
Q 017305 224 SAEVKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSD 303 (374)
Q Consensus 224 ~~~~~~~l~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~ 303 (374)
.+...+.+++++++|++||.+. ...+.+.++++.+++.|.++++|++... + ....++.+.++++++|++++|++
T Consensus 171 ~~~~~~~i~~a~~~~~~g~~~~-~~~~~~~~~~~~a~~~g~~v~ldls~~~--~---~~~~~~~l~~ll~~~Dil~~Ne~ 244 (372)
T 3uq6_A 171 QPHVWSLVEKAQVYYIAGFVIN-TCYEGMLKIAKHSLENEKLFCFNLSAPF--L---SQFNTKEVDEMISYSNIVFGNES 244 (372)
T ss_dssp SHHHHHHHHHCSEEEEEGGGHH-HHHHHHHHHHHHHHHTTCEEEEECCCHH--H---HHHCHHHHHHHHTTCSEEEEEHH
T ss_pred hhhHHHHhhcccEEEEeccccc-ccHHHHHHHHHHHHHcCCeEeeccccch--h---hhhhHHHHHHHhhcCCcccCCHH
Confidence 1334566889999999998642 3467788899999999999999997532 1 01235677889999999999999
Q ss_pred HHHHhhCC-----CCHHHHHHHHHHcC-----CCccEEEEEcCCCceEEEeCCc----eEEecCcee-eeecccchhhhh
Q 017305 304 EAESLTGL-----RNPITAGQELLRKG-----LRTKWVVVKMGPRGSILVTKSS----ISCAPAFKV-LQLQWVVVLVGM 368 (374)
Q Consensus 304 Ea~~l~g~-----~~~~~~~~~l~~~g-----~~~~~vvvT~G~~Ga~~~~~~~----~~~~pa~~v-~vVDttGagdaf 368 (374)
|++.|++. ++.+++++.+.+.. .+.+.+|||+|++|++++++++ .+.+|+.+. +|||||||||+|
T Consensus 245 Ea~~l~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~vvvT~G~~G~~~~~~~~~~~~~~~v~~~~~~~vVDTtGAGDaF 324 (372)
T 3uq6_A 245 EAEAYGEVHGLLEDTVHATARYIADLPFADGKKRKRLVIITRGKNPLLYTDSSDSEIHQFMVEQFKDDQIIDTNGAGDAF 324 (372)
T ss_dssp HHHHHHHHTTCCSSHHHHHHHHHHHSCCTTCCCCCCEEEEEETTEEEEEEESSCSSCEEECCCCCCGGGCCCCTTHHHHH
T ss_pred HHHHHhCCCCCchhHHHHHHHHHhhhhhhhhcCCceEEEEcCCCCceEEecCCCceeeeeeccCCCCCceeCCCchHHHH
Confidence 99998763 34567777776632 1237899999999999997653 234455443 799999999999
Q ss_pred cCCC
Q 017305 369 WQPW 372 (374)
Q Consensus 369 ~~G~ 372 (374)
.+|+
T Consensus 325 ~agf 328 (372)
T 3uq6_A 325 AAGF 328 (372)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 42
>4gm6_A PFKB family carbohydrate kinase; enzyme function initiative, transferase; 2.00A {Listeria grayi dsm 20601}
Probab=100.00 E-value=6.9e-35 Score=277.54 Aligned_cols=282 Identities=15% Similarity=0.107 Sum_probs=188.1
Q ss_pred CCCCCCcchhhhcccC--CCCccEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHH
Q 017305 63 NSQNGTAHDWKLRSSG--VKSIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAAR 140 (374)
Q Consensus 63 ~~~~~~~~~~~~~~~~--~~~~~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~lar 140 (374)
|++..++....+.+-. ++|.+|+++|++++|+.. ..+..+. ..+ .....+||+++|+|++|+|
T Consensus 4 ~~~~~~g~~~gs~n~~~~~mm~kv~~~GE~m~~l~p------~~~~~~~--~~~-------~~~~~~GG~~aNvA~~lar 68 (351)
T 4gm6_A 4 HHHHSSGVDLGTENLYFQSMMKQVVTIGELLMRLST------QQGIPFS--QTT-------ALDIHIGGAEANVAVNLSK 68 (351)
T ss_dssp ---------------------CEEEEECCCEEEEEC------CTTCCGG--GCS-------EEEEEEECHHHHHHHHHHH
T ss_pred ccccccccccCchhhhhHhccCCEEEEcceeEEecC------CCCCCcc--ccC-------eEEEecCChHHHHHHHHHH
Confidence 3444444455444332 344589999999999873 2222111 011 2344679999999999999
Q ss_pred cCCCeEEEEEecCchhHHHHHHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhh
Q 017305 141 LGLDCVTIGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWM 220 (374)
Q Consensus 141 LG~~~~~v~~vG~D~~G~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~ 220 (374)
||.++.++|+||+|.+|+++++.|+++|||++++.+.++.. |+..++..+..+++.+.+... ..++..+
T Consensus 69 LG~~~~~ig~vG~D~~G~~l~~~L~~~GVdt~~v~~~~~~~--------t~~~~~~~~~~~~~~~~~~~~---~~a~~~~ 137 (351)
T 4gm6_A 69 LGHPTRIATVVPANPIGKMAVEHLWRHQVDTAFVVEAGDRL--------GTYYLESGTALKAPSVVYDRQ---HSSFARH 137 (351)
T ss_dssp TTCCEEEEEEECSSHHHHHHHHHHHHTTEECTTEEECSSCC--------CEEEEECCBTTBCCEEEEECT---TCHHHHC
T ss_pred cCCCeEEEEEeCCCHHHHHHHHHHHHcCCCcccccccCCcc--------ceeEEEEccCCcceEEEEccc---cchhhhC
Confidence 99999999999999999999999999999999998776542 444444444455555543221 1111111
Q ss_pred hcccHHHHhhccCCcEEEEecCCC--CCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEE
Q 017305 221 NKLSAEVKTAIKHSKVLFCNGYGF--DELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVL 298 (374)
Q Consensus 221 ~~l~~~~~~~l~~~~~v~~~g~~~--~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil 298 (374)
........+.+++++++|++|+.+ .+...+.+.++++.|+++|++|+||++++.. +|. .+..++.+.++++++|++
T Consensus 138 ~~~d~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~ak~~g~~v~~D~n~r~~-lw~-~~~~~~~~~~~l~~~dil 215 (351)
T 4gm6_A 138 KSMDWDLSELLKGIRVLHVSGITIALSTFWLEMVVKIIREAKRNGIKISFDMNYRAK-LWE-LEAAKRAYQQLLPLVDYC 215 (351)
T ss_dssp CCCCCCHHHHHTTEEEEEEEHHHHHHCHHHHHHHHHHHHHHHHTTCEEEEECCCCTT-TSC-HHHHHHHHHHHGGGCSEE
T ss_pred CccccCHHHHHhhcccceecccchhhchhHHHHHHHHHHHHHHcCCCcccCCCcCch-hhh-hhhHHHHHHHHHHhCCcc
Confidence 111112345688999999998754 3445678889999999999999999999875 663 344577888999999999
Q ss_pred ecCHHHHHHhhCCCC-HHHHHHHHHHcCCC------ccEEEEEcCC--CceEEEeCCceEEecCcee-eeecccchhhhh
Q 017305 299 LLTSDEAESLTGLRN-PITAGQELLRKGLR------TKWVVVKMGP--RGSILVTKSSISCAPAFKV-LQLQWVVVLVGM 368 (374)
Q Consensus 299 ~~N~~Ea~~l~g~~~-~~~~~~~l~~~g~~------~~~vvvT~G~--~Ga~~~~~~~~~~~pa~~v-~vVDttGagdaf 368 (374)
++|++|+..++|..+ ..+..+.+.+.... .+.++++.+. .|+.++.+++.++.|++++ +|||||||||+|
T Consensus 216 ~~N~~Ea~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~VvDttGAGDaF 295 (351)
T 4gm6_A 216 SAGQMDAVAFFEISSETTDYYQAMHDKYPNIELFYATKRTVISASHHLLQGHLWTQGECWESEEYAIYPIVDRVGGGDAY 295 (351)
T ss_dssp ECCHHHHHHTSCCCTTCSCHHHHHHHHCTTCCEEEEEEEEEEETTEEEEEEEEEETTEEEEEEEEEECSCSCCTTHHHHH
T ss_pred ccCHHHHHHHhCCCCchhHHHHHHHhhhhhhhhhhccccceeeeccCCceEEEEeCCceEEeCCCCCCCcCCCCChhHHH
Confidence 999999999998642 22333333333211 1234555554 4667778888888888876 899999999999
Q ss_pred cCCC
Q 017305 369 WQPW 372 (374)
Q Consensus 369 ~~G~ 372 (374)
.+|+
T Consensus 296 ~ag~ 299 (351)
T 4gm6_A 296 TAAV 299 (351)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 43
>3ewm_A Uncharacterized sugar kinase PH1459; carbohydrate kinase, PFKB family, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 1.90A {Pyrococcus horikoshii} PDB: 3ih0_A* 3gbu_A*
Probab=100.00 E-value=1.3e-34 Score=271.28 Aligned_cols=251 Identities=19% Similarity=0.282 Sum_probs=192.3
Q ss_pred CccEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHHH
Q 017305 81 SIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFL 160 (374)
Q Consensus 81 ~~~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i 160 (374)
|++|+|+|++++|++...+ ++... .. .....+||+++|+|+++++||.++.++|.+|+|.+|+++
T Consensus 1 M~~v~viG~~~iD~~~~~~-----g~~~~---~~-------~~~~~~GG~~~NvA~~la~LG~~~~~ig~vG~D~~g~~i 65 (313)
T 3ewm_A 1 MSLIASIGELLIDLISVEE-----GDLKD---VR-------LFEKHPGGAPANVAVGVSRLGVKSSLISKVGNDPFGEYL 65 (313)
T ss_dssp -CEEEEESCCEEEEEESSS-----SCTTT---CC-------EEEEEEECHHHHHHHHHHHTTCEEEEEEEEESSHHHHHH
T ss_pred CCcEEEECceeeeeecCCC-----CCccc---cc-------ceeecCCCHHHHHHHHHHHCCCCeEEEEEeCCCHHHHHH
Confidence 3589999999999997632 22110 01 234567999999999999999999999999999999999
Q ss_pred HHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcccHHHHhhccCCcEEEEe
Q 017305 161 LDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCN 240 (374)
Q Consensus 161 ~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~~~ 240 (374)
++.|+++||+++++.+.++. +|+.+++.++. |+++++.+.+.. ....+ .+.+. .+.+++++++|++
T Consensus 66 ~~~l~~~gv~~~~v~~~~~~--------~T~~~~~~~~~-g~~~~~~~~~~a-~~~l~-~~~~~---~~~l~~~~~~~~~ 131 (313)
T 3ewm_A 66 IEELSKENVDTRGIVKDEKK--------HTGIVFVQLKG-ASPSFLLYDDVA-YFNMT-LNDIN---WDIVEEAKIVNFG 131 (313)
T ss_dssp HHHHHHTTCBCTTEEEESSS--------CCEEEEEECSS-SSCEEEECCSSG-GGCCC-GGGCC---HHHHHHCSEEEEE
T ss_pred HHHHHHcCCCccceeecCCC--------CceEEEEEecC-CCcceEeeccCH-HHhCC-hhhCC---HHHhCCCCEEEEc
Confidence 99999999999999866654 38888888775 888876543210 00000 01111 2346789999999
Q ss_pred cCCC-CCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCC-ChHHHHHHHhhhccCcEEecCHHHHHHhhCCCCHHHHH
Q 017305 241 GYGF-DELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSG-TPEEQRALSYFLSTSDVLLLTSDEAESLTGLRNPITAG 318 (374)
Q Consensus 241 g~~~-~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~-~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~~~~~~~~ 318 (374)
|+.+ .+.+.+.+.++++.++ .++++++|++.+.. +|.. .+...+.+.++++++|++++|++|++.|++....
T Consensus 132 g~~~~~~~~~~~~~~~~~~a~-~~~~v~~Dp~~~~~-~~~~~~~~~~~~~~~~l~~~di~~~N~~E~~~l~~~~~~---- 205 (313)
T 3ewm_A 132 SVILARNPSRETVMKVIKKIK-GSSLIAFDVNLRLD-LWRGQEEEMIKVLEESIKLADIVKASEEEVLYLENQGVE---- 205 (313)
T ss_dssp SGGGGSTTHHHHHHHHHHHHB-TTBEEEEECCCCGG-GGTTCHHHHHHHHHHHHHHCSEEEEEHHHHHHHHTTTCC----
T ss_pred CcccCCcchHHHHHHHHHHhc-cCCEEEEeCCCChH-HcCCCHHHHHHHHHHHHhhCCEEecCHHHHHHHhccCcc----
Confidence 9864 4556788889999888 47899999997653 5542 2344667888999999999999999998874311
Q ss_pred HHHHHcCCCccEEEEEcCCCceEEEeCCceEEecCceeeeecccchhhhhcCCC
Q 017305 319 QELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 319 ~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
..+. +.||||+|++|++++++++.+++|+++++++||||+||+|.+|+
T Consensus 206 ----~~~~--~~vviT~G~~G~~~~~~~~~~~~~~~~v~vvDttGAGDaf~a~~ 253 (313)
T 3ewm_A 206 ----VKGS--MLTAITLGPKGCRLIKNETVVDVPSYNVNPLDTTGAGDAFMAAL 253 (313)
T ss_dssp ----CCCS--SEEEEECGGGEEEEEETTEEEEEECCCCCCSCCTTHHHHHHHHH
T ss_pred ----ccCc--eEEEEEECCCCeEEEECCeeEEcCCCCcccCCCCCchHHHHHHH
Confidence 1222 56899999999999999999999999999999999999998765
No 44
>3b1n_A Ribokinase, putative; rossmann fold, ATP binding, Mg binding, nucleoside B transferase; HET: MZR ADP; 1.55A {Burkholderia thailandensis} PDB: 3b1o_A 3b1p_A* 3b1q_A* 3b1r_A*
Probab=100.00 E-value=1.1e-34 Score=273.34 Aligned_cols=244 Identities=16% Similarity=0.129 Sum_probs=190.9
Q ss_pred cEEEECCeeEEEeecC----------CCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEec
Q 017305 83 DVATLGNLCVDIVLNV----------PQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVG 152 (374)
Q Consensus 83 ~vlviG~~~~D~i~~~----------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG 152 (374)
+|+|+|++++|+++.+ +++|..+++... ......+||+++|+|+++++||.++.++|.+|
T Consensus 2 ~i~v~G~~~iD~~~~~~~~~~~~~~~~~~p~~~~~~~~----------~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG 71 (326)
T 3b1n_A 2 ATLICGSIAYDNIMTFEGRFREHILPDQVHLINLSFLV----------PTMRREFGGCAGNIAYALNLLGGDARMMGTLG 71 (326)
T ss_dssp CEEEESCCEEEEEEECSSCGGGGCCTTSSSSCEEEEEC----------CSCCCEEECHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred cEEEECcceEEEEEecchhhhhhccccccCCCCcceec----------ccceeccCCHHHHHHHHHHHcCCCeeEEEEEC
Confidence 7999999999999988 778877654310 12345679999999999999999999999999
Q ss_pred C-chhHHHHHHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcccHHHHhhc
Q 017305 153 N-EIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAI 231 (374)
Q Consensus 153 ~-D~~G~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~l 231 (374)
+ | +|+ +++.|+++||+++++.+.++. +|+.++++++++|++.+....+. ...+.. +++...
T Consensus 72 ~~D-~g~-i~~~L~~~gVd~~~v~~~~~~--------~T~~~~v~~~~~g~~~~~~~~ga-----~~~~~~--~~~~~~- 133 (326)
T 3b1n_A 72 AVD-AQP-YLDRMDALGLSREYVRVLPDT--------YSAQAMITTDLDNNQITAFHPGA-----MMQSHV--NHAGEA- 133 (326)
T ss_dssp TTT-CHH-HHHHHHHHTCEEEEEEEETTC--------CCEEEEEEECTTCCCEEEEECGG-----GGGGGG--SCGGGC-
T ss_pred CcC-HHH-HHHHHHHcCCcccceEEcCCC--------CceEEEEEECCCCceEEEEecCh-----hhhcCh--hhcccc-
Confidence 9 9 999 999999999999998876554 38899999998888876433221 111110 112222
Q ss_pred cCCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCC
Q 017305 232 KHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGL 311 (374)
Q Consensus 232 ~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~ 311 (374)
.+++++|++++ .++.+.++++.+++.|+++++|++.+.. +|. .+.+.++++++|++++|++|++.|+|.
T Consensus 134 ~~~~~v~~~~~-----~~~~~~~~~~~a~~~g~~v~~D~~~~~~-~~~-----~~~~~~~l~~~dil~~N~~Ea~~l~g~ 202 (326)
T 3b1n_A 134 KDIKLAIVGPD-----GFQGMVQHTEELAQAGVPFIFDPGQGLP-LFD-----GATLRRSIELATYIAVNDYEAKLVCDK 202 (326)
T ss_dssp CSCSEEEECSC-----CHHHHHHHHHHHHHHTCCEEECCGGGGG-GCC-----HHHHHHHHHHCSEEEEEHHHHHHHHHH
T ss_pred cCCCEEEECCc-----cHHHHHHHHHHHHHCCCEEEEeCchhhh-hcc-----HHHHHHHHHhCCEEecCHHHHHHHhCC
Confidence 78999999753 3678888999999999999999987542 331 245678899999999999999999874
Q ss_pred C--CHHHHHHHHHHcCCCccEEEEEcCCCceEEEeCCceEEecCceee-eecccchhhhhcCCC
Q 017305 312 R--NPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVL-QLQWVVVLVGMWQPW 372 (374)
Q Consensus 312 ~--~~~~~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~-vVDttGagdaf~~G~ 372 (374)
. +.+ .+.+. + +.||||+|++|++++++++.+++|+++++ ++||||+||+|.+|+
T Consensus 203 ~~~~~~----~l~~~-~--~~vvvT~G~~Ga~~~~~~~~~~~~~~~v~~vvDttGAGDaF~ag~ 259 (326)
T 3b1n_A 203 TGWSED----EIASR-V--QALIITRGEHGATIRHRDGTEQIPAVRAERVIDPTGCGDAFRGGL 259 (326)
T ss_dssp HCCCHH----HHHTT-S--SEEEEECGGGCEEEEETTEEEEECCCCCSCCCCCTTHHHHHHHHH
T ss_pred CCCCHH----HHHhc-C--CEEEEecCCCceEEEECCcEEEeCCCCCCCCCCCCCchHHHHHHH
Confidence 2 333 34443 4 78999999999999988888999999996 789999999998764
No 45
>2jg5_A Fructose 1-phosphate kinase; 1-phosphofructokinase, transferase; 2.3A {Staphylococcus aureus}
Probab=100.00 E-value=3.9e-34 Score=267.15 Aligned_cols=248 Identities=17% Similarity=0.165 Sum_probs=191.6
Q ss_pred cEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHHHHH
Q 017305 83 DVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLD 162 (374)
Q Consensus 83 ~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~~ 162 (374)
-+.+.|++++|+++.+++ +..|+..+. . .....+||+++|+|+++++||.++.++|.+|+ .+|+++++
T Consensus 2 i~tvt~n~~~D~~~~~~~-~~~g~~~~~---~-------~~~~~~GG~~~N~A~~la~LG~~~~~~~~vG~-~~g~~i~~ 69 (306)
T 2jg5_A 2 IYTVTFNPSIDYVIFTND-FKIDGLNRA---T-------ATYKFAGGKGINVSRVLKTLDVESTALGFAGG-FPGKFIID 69 (306)
T ss_dssp EEEEESSCEEEEEEECSS-CCTTSEEEC---S-------EEEEEEESHHHHHHHHHHHTTCCCEEEEEECH-HHHHHHHH
T ss_pred EEEEecCceEEEEEEcCC-cccCceEEe---c-------eeEecCCchHHHHHHHHHHcCCCeeEEEEecC-cchHHHHH
Confidence 578999999999999998 456654321 1 23456799999999999999999999999999 69999999
Q ss_pred HHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcccHHHHhhccCCcEEEEecC
Q 017305 163 VLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGY 242 (374)
Q Consensus 163 ~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~~~g~ 242 (374)
.|+++||+++++.+.++ |+.++++ ++|++.++...+....+ ..++.+.+.+.. +++++++|++|+
T Consensus 70 ~l~~~gv~~~~v~~~~~----------t~~~~~~--~~g~~~~~~~~g~~~~~--~~~~~~~~~~~~-~~~~~~v~~~g~ 134 (306)
T 2jg5_A 70 TLNNSAIQSNFIEVDED----------TRINVKL--KTGQETEINAPGPHITS--TQFEQLLQQIKN-TTSEDIVIVAGS 134 (306)
T ss_dssp HHHHTTCEECCEECSSC----------CEEEEEE--ESSSEEEEECCCCCCCH--HHHHHHHHHHTT-CCTTCEEEEESC
T ss_pred HHHHCCCceeEEEcCCC----------CeEEEEE--cCCCEEEEECCCCCCCH--HHHHHHHHHHHh-ccCCCEEEEeCC
Confidence 99999999999876432 4455544 46777655433221111 111111111111 678999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhc-cCcEEecCHHHHHHhhCCC-----CHHH
Q 017305 243 GFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLS-TSDVLLLTSDEAESLTGLR-----NPIT 316 (374)
Q Consensus 243 ~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~-~~Dil~~N~~Ea~~l~g~~-----~~~~ 316 (374)
.....+.+.+.++++.+++.|+++++|+++. .+.++++ ++|++++|++|++.|+|.. ++.+
T Consensus 135 ~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~-------------~~~~~l~~~~dil~~N~~E~~~l~g~~~~~~~~~~~ 201 (306)
T 2jg5_A 135 VPSSIPSDAYAQIAQITAQTGAKLVVDAEKE-------------LAESVLPYHPLFIKPNKDELEVMFNTTVNSDADVIK 201 (306)
T ss_dssp CCTTSCTTHHHHHHHHHHHHCCEEEEECCHH-------------HHHHHGGGCCSEECCBHHHHHHHTTSCCCSHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHCCCEEEEECChH-------------HHHHHHhcCCeEEecCHHHHHHHhCCCCCCHHHHHH
Confidence 6544556788889999999999999998731 2456777 6999999999999999863 3557
Q ss_pred HHHHHHHcCCCccEEEEEcCCCceEEEeCCceEEecCceeeeecccchhhhhcCCC
Q 017305 317 AGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 317 ~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
+++.|++.|+ +.||||+|++|++++++++.+++|+++++++||||+||+|.+|+
T Consensus 202 ~~~~l~~~g~--~~vvvt~G~~G~~~~~~~~~~~~~~~~v~vvdttGAGDaf~a~~ 255 (306)
T 2jg5_A 202 YGRLLVDKGA--QSVIVSLGGDGAIYIDKEISIKAVNPQGKVVNTVGSGDSTVAGM 255 (306)
T ss_dssp HHHHHHHTTC--SCEEEECGGGCEEEECSSEEEEEECCCCCCCCCTTHHHHHHHHH
T ss_pred HHHHHHHcCC--CEEEEccCCCceEEEeCCcEEEEeCCcccccCCcChHHHHHHHH
Confidence 7888888877 78999999999999988888899999999999999999998764
No 46
>2pkf_A Adenosine kinase; transferase, S genomics, TB structural genomics consortium, TBSGC; 1.50A {Mycobacterium tuberculosis} PDB: 2pkk_A* 2pkm_A* 2pkn_A*
Probab=100.00 E-value=1.1e-34 Score=274.28 Aligned_cols=250 Identities=16% Similarity=0.154 Sum_probs=192.7
Q ss_pred CccEEEECCeeEEEeecC----------CCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEE
Q 017305 81 SIDVATLGNLCVDIVLNV----------PQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGH 150 (374)
Q Consensus 81 ~~~vlviG~~~~D~i~~~----------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~ 150 (374)
+|+|+|+|++++|+++.+ +++|..+++... ......+||+++|+|+++++||.++.++|.
T Consensus 10 ~m~i~v~G~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~GG~~~NvA~~la~LG~~~~~i~~ 79 (334)
T 2pkf_A 10 HMTIAVTGSIATDHLMRFPGRFSEQLLPEHLHKVSLSFLV----------DDLVMHRGGVAGNMAFAIGVLGGEVALVGA 79 (334)
T ss_dssp SSEEEEESCCEEEEEEECSSCTHHHHTTSCGGGCCCCCCC----------SEEEEEEECHHHHHHHHHHHTTCEEEEECE
T ss_pred CCeEEEECChhheEEEecChHHhhhhchhhcccccccccc----------ccceecCCChHHHHHHHHHHcCCCeEEEEE
Confidence 358999999999999987 666666543210 123446799999999999999999999999
Q ss_pred ecCchhHHHHHHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcccHHHHhh
Q 017305 151 VGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTA 230 (374)
Q Consensus 151 vG~D~~G~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~ 230 (374)
+|+| +|+ +++.|+++||+++++.+.++. +|+.++++++++|++.+..+.+.. .... .+.+... ...
T Consensus 80 vG~D-~g~-i~~~L~~~gV~~~~v~~~~~~--------~T~~~~~~~~~~g~~~~~~~~ga~--~~~~-~~~~~~~-~~~ 145 (334)
T 2pkf_A 80 AGAD-FAD-YRDWLKARGVNCDHVLISETA--------HTARFTCTTDVDMAQIASFYPGAM--SEAR-NIKLADV-VSA 145 (334)
T ss_dssp ECGG-GHH-HHHHHHTTTEECTTCEECSSC--------CCEEEEEEECTTCCEEEEEECGGG--GGGG-GCCHHHH-HHH
T ss_pred EeCc-hHH-HHHHHHHCCCceeeeEecCCC--------CceEEEEEEcCCCCEEEEECCchh--hhCC-HhhcChh-hhh
Confidence 9999 999 999999999999998876554 388999999988888764332211 1000 1112111 123
Q ss_pred ccCCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhC
Q 017305 231 IKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTG 310 (374)
Q Consensus 231 l~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g 310 (374)
+.+++++|++++ .++.+.++++.+++.|+++++|++.+.. +|. .+.+.++++++|++++|++|++.|+|
T Consensus 146 l~~~~~v~~~~~-----~~~~~~~~~~~a~~~g~~v~~D~~~~~~-~~~-----~~~l~~~l~~~dil~~N~~E~~~l~g 214 (334)
T 2pkf_A 146 IGKPELVIIGAN-----DPEAMFLHTEECRKLGLAFAADPSQQLA-RLS-----GEEIRRLVNGAAYLFTNDYEWDLLLS 214 (334)
T ss_dssp HCSCSEEEEESC-----CHHHHHHHHHHHHHHTCCEEEECGGGGG-TSC-----HHHHHTTTTTCSEEEEEHHHHHHHHH
T ss_pred hcCCCEEEEcCC-----ChHHHHHHHHHHHhcCCeEEEeccchhh-hhh-----HHHHHHHHhcCCEEecCHHHHHHHhc
Confidence 588999999864 3577888999999999999999987643 332 24567899999999999999999987
Q ss_pred CC--CHHHHHHHHHHcCCCccEEEEEcCCCceEEEeCCc-eEEecCceee-eecccchhhhhcCCC
Q 017305 311 LR--NPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSS-ISCAPAFKVL-QLQWVVVLVGMWQPW 372 (374)
Q Consensus 311 ~~--~~~~~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~-~~~~pa~~v~-vVDttGagdaf~~G~ 372 (374)
.. +.+ .+++. + +.||||+|++|++++++++ .+++|+++++ ++||||+||+|.+|+
T Consensus 215 ~~~~~~~----~l~~~-~--~~vvvt~G~~G~~~~~~~~~~~~~~~~~v~~vvDttGAGDaF~a~~ 273 (334)
T 2pkf_A 215 KTGWSEA----DVMAQ-I--DLRVTTLGPKGVDLVEPDGTTIHVGVVPETSQTDPTGVGDAFRAGF 273 (334)
T ss_dssp HHCCCHH----HHHTT-C--SCEEEECGGGCEEEECTTSCEEEECCCCCSCCCCCTTHHHHHHHHH
T ss_pred cCCCCHH----HHHhc-C--CEEEEEeCCCCeEEEeCCCcEEEeCCcCCCCCCCCCCchHHHHHHH
Confidence 42 232 34443 4 7899999999999998877 8899999986 789999999998764
No 47
>2afb_A 2-keto-3-deoxygluconate kinase; TM0067, 2-dehydro-3- deoxygluconokinase, PFKB family carbohy kinase, structural genomics; 2.05A {Thermotoga maritima} SCOP: c.72.1.1
Probab=100.00 E-value=1.7e-32 Score=261.04 Aligned_cols=260 Identities=18% Similarity=0.219 Sum_probs=193.9
Q ss_pred CCccEEEECCeeEEEeecCCCCCCCch-hhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHH
Q 017305 80 KSIDVATLGNLCVDIVLNVPQLPPPSR-DARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGR 158 (374)
Q Consensus 80 ~~~~vlviG~~~~D~i~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~ 158 (374)
..|+|+++|+.+.++.. +++ ++. ... .....+||+++|+|+++++||.++.++|.+|+|.+|+
T Consensus 11 ~~~~~~~~ge~l~~~~~-------~~~~~~~--~~~-------~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~G~ 74 (351)
T 2afb_A 11 HHMKVVTFGEIMLRLSP-------PDHKRIF--QTD-------SFDVTYGGAEANVAAFLAQMGLDAYFVTKLPNNPLGD 74 (351)
T ss_dssp CCCEEEEESCCEEEEEC-------STTCCGG--GCS-------EEEEEEECHHHHHHHHHHHTTSEEEEEEEECSSHHHH
T ss_pred ccceEEEechhhheecC-------CCCcccc--ccc-------eeeEecCChHHHHHHHHHHcCCCeEEEEEeCCCHHHH
Confidence 45789999999998763 222 110 001 2344679999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccc--cCCCCCCchhhhhhcccHHHHhhccCCcE
Q 017305 159 FLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCS--RADFSKEPAFSWMNKLSAEVKTAIKHSKV 236 (374)
Q Consensus 159 ~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~--~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 236 (374)
++++.|+++||+++++... +. +|+.+++.++.++++.++. +.+.. ..... .+.+. ....++++++
T Consensus 75 ~i~~~L~~~gv~~~~v~~~-~~--------~t~~~~v~~~~~~r~~~v~~~~~~~a-~~~~~-~~~~~--~~~~~~~~~~ 141 (351)
T 2afb_A 75 AAAGHLRKFGVKTDYIARG-GN--------RIGIYFLEIGASQRPSKVVYDRAHSA-ISEAK-REDFD--WEKILDGARW 141 (351)
T ss_dssp HHHHHHHHTTCBCTTEEEC-SS--------CCCEEEEECCBTTBCCEEEEECTTCT-TTTCC-GGGCC--HHHHTTTEEE
T ss_pred HHHHHHHHcCCcceeEEEC-CC--------cceEEEEEecCCCCcceEEEeCCCCh-hhhCC-hhhCC--HHHhhcCCCE
Confidence 9999999999999998763 33 3778877766433333332 22110 00000 01121 1234688999
Q ss_pred EEEecCCC--CCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCCCC-
Q 017305 237 LFCNGYGF--DELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRN- 313 (374)
Q Consensus 237 v~~~g~~~--~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~~~- 313 (374)
+|++|+.+ .+...+.+.++++.+++.|+++++|++.+.. +|. ....++.+.++++++|++++|++|++.|+|...
T Consensus 142 v~~~g~~~~~~~~~~~~~~~~~~~a~~~g~~v~~Dp~~~~~-~~~-~~~~~~~~~~ll~~~dil~~N~~E~~~l~g~~~~ 219 (351)
T 2afb_A 142 FHFSGITPPLGKELPLILEDALKVANEKGVTVSCDLNYRAR-LWT-KEEAQKVMIPFMEYVDVLIANEEDIEKVLGISVE 219 (351)
T ss_dssp EEEETTSGGGSTTHHHHHHHHHHHHHHHTCEEEEECCCCTT-TCC-HHHHHHHHHHHGGGCSEEEECHHHHHHHHCCCCS
T ss_pred EEEeCcccccChhHHHHHHHHHHHHHHcCCEEEEeCCCchh-cCC-hHHHHHHHHHHHhhCCEEEecHHHHHHHhCCCcc
Confidence 99998864 2333578889999999999999999997653 442 123456778899999999999999999998653
Q ss_pred -------------HHHHHHHHHHc-CCCccEEEEEcCCCce--------EEEeCCceEEecCceeeeecccchhhhhcCC
Q 017305 314 -------------PITAGQELLRK-GLRTKWVVVKMGPRGS--------ILVTKSSISCAPAFKVLQLQWVVVLVGMWQP 371 (374)
Q Consensus 314 -------------~~~~~~~l~~~-g~~~~~vvvT~G~~Ga--------~~~~~~~~~~~pa~~v~vVDttGagdaf~~G 371 (374)
.+++++.|+++ |+ +.||||+|++|+ +++.+++.+++|+++++++||||+||+|.+|
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~l~~~~g~--~~vvvT~G~~G~~~~~~~g~~~~~~~~~~~~~~~~v~vvdttGAGDaF~ag 297 (351)
T 2afb_A 220 GLDLKTGKLNREAYAKIAEEVTRKYNF--KTVGITLRESISATVNYWSVMVFENGQPHFSNRYEIHIVDRVGAGDSFAGA 297 (351)
T ss_dssp CC-------CHHHHHHHHHHHHHHHCC--SEEEEEEEECSCSSEEEEEEEEEETTEEEECCCEEEECSCCTTHHHHHHHH
T ss_pred cccccccccchhhHHHHHHHHHHHcCC--CEEEEEeCCcCccccccceeEEEeCCcEEEcCCCCCccCCCCCchHHHHHH
Confidence 45677888775 76 789999999975 7777778889999999999999999999886
Q ss_pred C
Q 017305 372 W 372 (374)
Q Consensus 372 ~ 372 (374)
+
T Consensus 298 ~ 298 (351)
T 2afb_A 298 L 298 (351)
T ss_dssp H
T ss_pred H
Confidence 4
No 48
>3kd6_A Carbohydrate kinase, PFKB family; nucleoside kinase, AMP, PSI-II, NYSGXRC, struc genomics, protein structure initiative; HET: AMP; 1.88A {Chlorobaculum tepidum}
Probab=100.00 E-value=5.6e-33 Score=260.29 Aligned_cols=239 Identities=20% Similarity=0.266 Sum_probs=183.3
Q ss_pred ccEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCC-CeEEEEEecCchhHHHH
Q 017305 82 IDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGL-DCVTIGHVGNEIYGRFL 160 (374)
Q Consensus 82 ~~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~-~~~~v~~vG~D~~G~~i 160 (374)
++|+|+|++++|++... . + .....+||+++|+|+++++||. ++.++|.+|+| +|+++
T Consensus 3 ~~ilviG~~~iD~~~~~----~-~----------------~~~~~~GG~~~NvA~~la~LG~~~~~~ig~vG~D-~g~~~ 60 (313)
T 3kd6_A 3 LSLLVIGSLAFDDIETP----F-G----------------RSDNTLGGSSTYIALSASYFTDEPIRMVGVVGSD-FGKEH 60 (313)
T ss_dssp CCEEEESCCEEEEEECS----S-C----------------EEEEEEECHHHHHHHHHTTTCSSCEEEEEEEETT-SCHHH
T ss_pred ccEEEEeEEEEeeecCC----C-C----------------cccccCCCHHHHHHHHHHHhCCCceEEEEecCCC-cHHHH
Confidence 57999999999999642 1 1 1124569999999999999999 99999999999 99999
Q ss_pred HHHHHhcCCcccceeeCCCCCcccCCCccceeEE--EEECCCCCccccccCCCCCCchhhhhhcccHHHHhhccCCcEEE
Q 017305 161 LDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCW--VLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLF 238 (374)
Q Consensus 161 ~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~--i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~ 238 (374)
++.|+++||+++++.+.++.+ |.... ...+.++++.+....+. ...+.+.+.+.+++++++|
T Consensus 61 ~~~L~~~gVd~~~v~~~~~~~--------T~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~v~ 124 (313)
T 3kd6_A 61 FDLLHAKNIDTRGIQVIEDGK--------TFRWAGRYHYDMNTRDTLDTQLNV--------FAEFDPHVPQYYRDSKFVC 124 (313)
T ss_dssp HHHHHHTTEEEEEEEEETTCC--------CEEEEEEECTTSSCEEEEEEECGG--------GTTCCCCCCGGGTTCSEEE
T ss_pred HHHHHHcCCCccceEEcCCCC--------eeeeeeeeeccccccceeecccch--------HhhcCccchHHHccCCEEE
Confidence 999999999999998776543 32111 11222333333211110 0112222334578899999
Q ss_pred EecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCCCCHHHHH
Q 017305 239 CNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRNPITAG 318 (374)
Q Consensus 239 ~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~~~~~~~~ 318 (374)
+++ ++++...++++.+ +.+.++++|+.. +|. +...+.+.++++++|++++|++|++.|+|.++.++++
T Consensus 125 ~~~-----~~~~~~~~~~~~~-~~~~~v~~Dp~~----~~~--~~~~~~~~~~l~~~dil~~N~~E~~~l~g~~~~~~~~ 192 (313)
T 3kd6_A 125 LGN-----IDPELQLKVLDQI-DDPKLVVCDTMN----FWI--EGKPEELKKVLARVDVFIVNDSEARLLSGDPNLVKTA 192 (313)
T ss_dssp ECS-----SCHHHHHHHHTTC-SSCSEEEEECCH----HHH--HHCHHHHHHHHTTCSEEEEEHHHHHHHHSCSCHHHHH
T ss_pred EcC-----CCHHHHHHHHHHH-hhCCEEEEcChh----hhh--hhhHHHHHHHHhcCCEEEeCHHHHHHHhCCCCHHHHH
Confidence 964 3466667777777 568899999842 221 2234667889999999999999999999999999999
Q ss_pred HHHHHcCCCccEEEEEcCCCceEEEeCCceEEecCcee-eeecccchhhhhcCCC
Q 017305 319 QELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKV-LQLQWVVVLVGMWQPW 372 (374)
Q Consensus 319 ~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v-~vVDttGagdaf~~G~ 372 (374)
+.|++.|+ +.||||+|++|++++++++.+++|++++ +++||||+||+|.+|+
T Consensus 193 ~~l~~~g~--~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGDaf~a~~ 245 (313)
T 3kd6_A 193 RIIREMGP--KTLIIKKGEHGALLFTDNGIFAAPAFPLESIYDPTGAGDTFAGGF 245 (313)
T ss_dssp HHHHTTSC--SEEEEECTTSCEEEEETTEEEEECCCTTCCCSCCTTHHHHHHHHH
T ss_pred HHHHHcCC--CEEEEeeCCCcEEEEECCceEEeCCCCCCCcCCCCCccHHHHHHH
Confidence 99999887 7899999999999999999999999998 7999999999998875
No 49
>3bf5_A Ribokinase related protein; 10640157, putative ribokinase, structural genomics, joint CE structural genomics, JCSG; HET: MSE; 1.91A {Thermoplasma acidophilum dsm 1728}
Probab=100.00 E-value=4.3e-34 Score=266.96 Aligned_cols=236 Identities=17% Similarity=0.160 Sum_probs=180.7
Q ss_pred CCCCccEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhH
Q 017305 78 GVKSIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYG 157 (374)
Q Consensus 78 ~~~~~~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G 157 (374)
.+++++|+|+|++++|++..++++| .++.... . .....+||+++|+|+++++||.++.++|.+|+| +|
T Consensus 17 ~~~~~~v~viG~~~iD~~~~~~~~p-~g~~~~~---~-------~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D-~G 84 (306)
T 3bf5_A 17 FQGMRFLAYFGHLNIDVLISVDSIP-REGSVNV---K-------DLRPRFGGTAGNFAIVAQKFRIPFDLYSAVGMK-TH 84 (306)
T ss_dssp --CCEEEEEECCCEEEEEEECSCCC-SSEEEEC---S-------EEEEEEEHHHHHHHHHHHHTTCCCEEEEEEETT-TC
T ss_pred ccCCCcEEEECCceEEEEEecCCCC-CCceEEC---c-------ceEecCCChHHHHHHHHHHcCCCeEEEEEEeCC-hH
Confidence 3466789999999999999999998 6653211 1 123467999999999999999999999999999 99
Q ss_pred HHHHHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcccHHHHhhccCCcEE
Q 017305 158 RFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVL 237 (374)
Q Consensus 158 ~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v 237 (374)
+++++.|+++||+++++.+.++. +|+.+++++++ |+|+++...+ .. .. +.+++ + .+++++
T Consensus 85 ~~i~~~L~~~gV~~~~v~~~~~~--------~T~~~~~~~~~-g~r~~~~~~g----a~-~~---~~~~l-~--~~~~~v 144 (306)
T 3bf5_A 85 REYLAMIESMGINTGHVEKFEDE--------SGPICYIATDG-KKQVSFMHQG----AM-AA---WAPQL-A--DEYEYV 144 (306)
T ss_dssp HHHHHHHHHTTCCCTTEEEETTC--------CCSEEEEEECS-SCEEEEEECT----HH-HH---CCCCC-C--SCEEEE
T ss_pred HHHHHHHHHcCCCchheEecCCC--------CCceEEEEEcC-CeeEEEEeCC----hh-hh---hhHhh-c--CCCCEE
Confidence 99999999999999998665553 38899999987 8887764322 11 11 11111 1 678999
Q ss_pred EEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCCCCHHHH
Q 017305 238 FCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGLRNPITA 317 (374)
Q Consensus 238 ~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~~~~~~~ 317 (374)
|++++. .+.++++.+++ ++++|++++. |.. ..+.+.++++++|++++|++|++.|+|..+.++.
T Consensus 145 ~~~~~~-------~~~~~~~~a~~---~v~~D~~~~~---~~~---~~~~~~~~l~~~dil~~N~~E~~~l~g~~~~~~~ 208 (306)
T 3bf5_A 145 HFSTGP-------NYLDMAKSIRS---KIIFDPSQEI---HKY---SKDELKKFHEISYMSIFNDHEYRVFREMTGLSSP 208 (306)
T ss_dssp EECSSS-------SHHHHHHHCCS---EEEECCGGGG---GGS---CHHHHHHHHHHCSEEEEEHHHHHHHHHHHCCSSC
T ss_pred EECChH-------HHHHHHHHhCC---cEEEcCchhh---hhc---cHHHHHHHHhcCCEEEcCHHHHHHHhCCCCcCcc
Confidence 998653 45667776654 8999999542 211 1355678899999999999999998874322111
Q ss_pred HHHHHHcCCCccEEEEEcCCCceEEEeCCceEEecCceeeeecccchhhhhcCCC
Q 017305 318 GQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 318 ~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
. . .||||+|++|++++++++.+++|+++++ +||||+||+|.+|+
T Consensus 209 ------~-l---~vvvT~G~~Ga~~~~~~~~~~~~~~~v~-vDttGAGDaF~ag~ 252 (306)
T 3bf5_A 209 ------K-V---TTIVTNGERGSSLFMDGKKYDFPAIPSS-GDTVGAGDSFRAGL 252 (306)
T ss_dssp ------S-S---CEEEEEGGGEEEEEETTEEEEEECCCCC-SCCTTHHHHHHHHH
T ss_pred ------c-E---EEEEeecccCeEEEeCCcEEEecCCcCC-CCCCCccHHHHHHH
Confidence 1 1 2999999999999988888999999999 99999999998764
No 50
>1vk4_A PFKB carbohydrate kinase TM0415; structural genomics, JCSG, protein structure initiative, joint center for structural G transferase; 1.91A {Thermotoga maritima} SCOP: c.72.1.1
Probab=99.96 E-value=3.7e-29 Score=232.69 Aligned_cols=238 Identities=13% Similarity=0.057 Sum_probs=173.2
Q ss_pred cEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCcHHHHHHHHHHcCCCeEEEEEecCchhHHHHHH
Q 017305 83 DVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLD 162 (374)
Q Consensus 83 ~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~~ 162 (374)
.|.+.|.+..|.+.+... ....+||+++|+|+++++||.++.++|.+|+|. +++++
T Consensus 13 ~~~~~~~~~~~~~~~~~~----------------------~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~--~~~~~ 68 (298)
T 1vk4_A 13 MITFIGHVSKDVNVVDGK----------------------REIAYGGGVVMGAITSSLLGVKTKVITKCTRED--VSKFS 68 (298)
T ss_dssp EEEEECCCEEEEEEETTE----------------------EEEEEECHHHHHHHHHHHTTCEEEEEEEECTTT--GGGGT
T ss_pred eEEEeccccCceEeecCe----------------------EEEecCCHHHHHHHHHHHcCCceEEEEEEcCCH--HHHHH
Confidence 488999999998875321 223569999999999999999999999999996 78899
Q ss_pred HHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcccHHHHhhccCCcEEEEecC
Q 017305 163 VLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGY 242 (374)
Q Consensus 163 ~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~~~g~ 242 (374)
.|+++||+++++.. + . +|+++.++ +++|++.+........ .+..+..+. .+++++|++++
T Consensus 69 ~L~~~gVd~~~v~~-~-~--------~t~~~~i~-~~~g~~~~~~~~~~~~--------~l~~~~~~~-~~~~~v~~~~~ 128 (298)
T 1vk4_A 69 FLRDNGVEVVFLKS-P-R--------TTSIENRY-GSDPDTRESFLISAAD--------PFTESDLAF-IEGEAVHINPL 128 (298)
T ss_dssp TTGGGTCEEEEEEC-S-S--------CEEEEEEC------CCEEEEEECCC--------CCCGGGGGG-CCSSEEEECCS
T ss_pred HHHHcCCceEEEec-C-C--------CcEEEEEE-cCCCCeeEEEeccccc--------cCCHHHcCc-CCCCEEEECCc
Confidence 99999999998754 2 1 36666554 5567776543221111 122111111 57899999877
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCC--hHHHHHHHhhhccCcEEecCHHHHHHhhCCCCHHHHHHH
Q 017305 243 GFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGT--PEEQRALSYFLSTSDVLLLTSDEAESLTGLRNPITAGQE 320 (374)
Q Consensus 243 ~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~--~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~~~~~~~~~~ 320 (374)
...+.. .++++.+++.|.++++|+++....+|... +..++.+.++++++|++++|++|++.|+|..+++++++.
T Consensus 129 ~~~~~~----~~~~~~~~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~~~~l~~~dil~~N~~E~~~l~g~~~~~~~~~~ 204 (298)
T 1vk4_A 129 WYGEFP----EDLIPVLRRKVMFLSADAQGFVRVPENEKLVYRDWEMKEKYLKYLDLFKVDSREAETLTGTNDLRESCRI 204 (298)
T ss_dssp STTSSC----GGGHHHHHHHCSEEEEETHHHHEEEETTEEEECCCTTHHHHGGGCSEEEEEHHHHHHHHSCSCHHHHHHH
T ss_pred cccccc----HHHHHHHHHcCCEEEEecCccccccccccccccchHHHHhhcccCCEEecCHHHHHHHhCCCCHHHHHHH
Confidence 443333 35566777889999999984211111000 000123567899999999999999999998899999999
Q ss_pred HHHcCCCccEEEEEcCCCceEEEeCCceEEecCceeeeecccchhhhhcCCC
Q 017305 321 LLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 321 l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
|++.|+ +.||||+ ++|++++++ +.+++|+++++++||||+||+|.+|+
T Consensus 205 l~~~g~--~~vvvT~-~~G~~~~~~-~~~~~~~~~v~vvDttGAGDaF~a~~ 252 (298)
T 1vk4_A 205 IRSFGA--KIILATH-ASGVIVFDG-NFYEASFRSWSLEGRTGRGDTCTAAF 252 (298)
T ss_dssp HHHTTC--SSEEEEE-TTEEEEESS-SEEEEECCCSSGGGGTTHHHHHHHHH
T ss_pred HHhcCC--CEEEEEc-CCCcEEEeC-CEEEeccCCcccCCCcCccHHHHHHH
Confidence 999887 7899999 999999887 78899999999999999999998764
No 51
>2yxt_A Pyridoxal kinase; beta sheet with alpha helix, metal ION, transferase; 2.00A {Homo sapiens} PDB: 2yxu_A* 3kbi_A* 3keu_A* 4en4_A* 4eoh_A* 2f7k_A 3fhy_A* 3fhx_A* 2ajp_A* 1lhp_A 1lhr_A* 1rft_A* 1rfu_A* 1rfv_A* 1ygj_A* 1ygk_A* 1yhj_A*
Probab=99.77 E-value=2.5e-19 Score=167.28 Aligned_cols=196 Identities=17% Similarity=0.131 Sum_probs=130.2
Q ss_pred CeEEEEEecCchhHHHHHHHHHhcCCcccceeeC--CCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhh
Q 017305 144 DCVTIGHVGNEIYGRFLLDVLQDEGIGMVGMSED--TDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMN 221 (374)
Q Consensus 144 ~~~~v~~vG~D~~G~~i~~~L~~~GVd~~~v~~~--~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~ 221 (374)
.+.++|.+|+|. |+++ |+++||+++++.+. .+ .|++.+ . .|. ... .++++
T Consensus 12 ~~~~~g~vG~D~-g~~i---L~~~GV~~~~v~~~~~~~---------~t~~~~--~--~g~---------~l~--~~~i~ 63 (312)
T 2yxt_A 12 SHVIRGYVGNRA-ATFP---LQVLGFEIDAVNSVQFSN---------HTGYAH--W--KGQ---------VLN--SDELQ 63 (312)
T ss_dssp EEESSSCSTHHH-HHHH---HHHTTCEEEEEEEEEESS---------CTTSSC--C--CEE---------ECC--HHHHH
T ss_pred cccCCCccchHh-hHHH---HHHcCCeEEEEEEEEecC---------CCCcCC--c--cCc---------cCC--HHHHH
Confidence 467889999998 9998 99999999887542 11 122111 0 110 001 11121
Q ss_pred cccHHHHhh-ccCCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCe--EEEcCCCCCC-----CCCCCChHHHHHHHh-hh
Q 017305 222 KLSAEVKTA-IKHSKVLFCNGYGFDELSPALIISALEYAAQVGTS--IFFDPGPRGK-----SLSSGTPEEQRALSY-FL 292 (374)
Q Consensus 222 ~l~~~~~~~-l~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~--v~~D~~~~~~-----~~~~~~~~~~~~~~~-ll 292 (374)
.+.+.+... +.+++++++ |+.......+.+.++++.++++|.. +++||+.+.. .+|. .++..+.+.+ ++
T Consensus 64 ~~~~~~~~~~~~~~~~v~~-G~~~~~~~~~~~~~~~~~a~~~g~~~~vv~Dp~~~~~~~~sg~~~~-~~~~~~~l~~~ll 141 (312)
T 2yxt_A 64 ELYEGLRLNNMNKYDYVLT-GYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVLGDKWDGEGSMYV-PEDLLPVYKEKVV 141 (312)
T ss_dssp HHHHHHHHTTCCCCSEEEE-CCCCCHHHHHHHHHHHHHHHHHCTTCEEEECCCCEEC--CCCEESS-CTTHHHHHHHTTG
T ss_pred HHHHHHHhcCCccCCEEEE-CCCCCHHHHHHHHHHHHHHHhhCCCCeEEECCCcCCCCCCCCCeeC-CHHHHHHHHHHhh
Confidence 111222222 678999875 5432111145566888888888754 8999986531 1222 2234556664 89
Q ss_pred ccCcEEecCHHHHHHhhCCC-----CHHHHHHHHHHcCCCccEEEEEcCCC------ceEEE-------eC-C----ceE
Q 017305 293 STSDVLLLTSDEAESLTGLR-----NPITAGQELLRKGLRTKWVVVKMGPR------GSILV-------TK-S----SIS 349 (374)
Q Consensus 293 ~~~Dil~~N~~Ea~~l~g~~-----~~~~~~~~l~~~g~~~~~vvvT~G~~------Ga~~~-------~~-~----~~~ 349 (374)
+++|++++|++|++.|+|.. +.+++++.|++.|+ +.||||+|+. |++++ ++ + +.+
T Consensus 142 ~~~dil~pN~~Ea~~L~g~~~~~~~~~~~~~~~l~~~g~--~~VvvT~G~~g~~~~~G~~~~~~~~~~~~~~~~~~~~~~ 219 (312)
T 2yxt_A 142 PLADIITPNQFEAELLSGRKIHSQEEALRVMDMLHSMGP--DTVVITSSDLPSPQGSNYLIVLGSQRRRNPAGSVVMERI 219 (312)
T ss_dssp GGCSEECCCHHHHHHHHSCCCCSHHHHHHHHHHHHHHSC--SEEEECCCSCCCTTCTTEEEEEEEEEC----CCCCEEEE
T ss_pred hhCCEEcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC--CEEEEecccCCCCCCCceEEEEEeccccccccccccceE
Confidence 99999999999999999963 46778888999887 7899998876 47765 44 2 578
Q ss_pred EecCceeeeecccchhhhhcCCC
Q 017305 350 CAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 350 ~~pa~~v~vVDttGagdaf~~G~ 372 (374)
++|++++++ ||||+||+|.+|+
T Consensus 220 ~~~~~~v~v-dttGAGDaf~a~~ 241 (312)
T 2yxt_A 220 RMDIRKVDA-VFVGTGDLFAAML 241 (312)
T ss_dssp EEEEECCSS-CCSSHHHHHHHHH
T ss_pred EEeecccCC-CCCCchHHHHHHH
Confidence 889888887 9999999998764
No 52
>2ddm_A Pyridoxine kinase; pyridoxal kinase, ribokinase, pyridoxal 5'-phosphate, vitamin B6, phosphorylation, transferase; 2.10A {Escherichia coli} PDB: 2ddo_A* 2ddw_A*
Probab=99.76 E-value=9.6e-19 Score=161.05 Aligned_cols=202 Identities=18% Similarity=0.233 Sum_probs=132.9
Q ss_pred cCCCeEE-EEEecCchhHHHHHHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhh
Q 017305 141 LGLDCVT-IGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSW 219 (374)
Q Consensus 141 LG~~~~~-v~~vG~D~~G~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~ 219 (374)
||..... +|.+|.| ..+..|++.||++.++. |. +..+..|.+.+. .. ... .++
T Consensus 19 L~i~~~~~~g~~G~d----~~~~~l~~~Gv~~~~v~--------------t~---i~~~~~g~~~~~-g~--~~~--~~~ 72 (283)
T 2ddm_A 19 VAVQSQVVYGSVGNS----IAVPAIKQNGLNVFAVP--------------TV---LLSNTPHYDTFY-GG--AIP--DEW 72 (283)
T ss_dssp EEEEEEESSSSSTHH----HHHHHHHHTTCCEEEEE--------------EE---EESSCTTSSCCC-EE--ECC--HHH
T ss_pred EEEecccCCCcchHH----HHHHHHHHcCCeeeEEe--------------EE---EeccCCCcCcee-ee--eCC--HHH
Confidence 4555444 6777777 34678899999998773 21 223444544421 10 111 122
Q ss_pred hhcccHHHHh--hccCCcEEEEecCCCCCCCHHHHHHHHHHHHh--cCCeEEEcCCCCCC--CCCCCChHHHHHHHhhhc
Q 017305 220 MNKLSAEVKT--AIKHSKVLFCNGYGFDELSPALIISALEYAAQ--VGTSIFFDPGPRGK--SLSSGTPEEQRALSYFLS 293 (374)
Q Consensus 220 ~~~l~~~~~~--~l~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~--~g~~v~~D~~~~~~--~~~~~~~~~~~~~~~ll~ 293 (374)
++.+.+.+.+ .++++++++++.+.. ....+.+.++++.+++ .|+++++||+.+.. ..|...........++++
T Consensus 73 ~~~~~~~l~~~~~~~~~~~v~~G~l~~-~~~~~~~~~~l~~a~~~~~g~~vv~Dp~~~~~~~~~~~~~~~~~~~~~~ll~ 151 (283)
T 2ddm_A 73 FSGYLRALQERDALRQLRAVTTGYMGT-ASQIKILAEWLTALRKDHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQYLLP 151 (283)
T ss_dssp HHHHHHHHHHTTCCTTCCEEEECCCSC-HHHHHHHHHHHHHHHTTCTTCEEEECCCCEETTTEECSCTTHHHHHHHTTGG
T ss_pred HHHHHHHHHhcCCcccCCEEEECCcCC-HHHHHHHHHHHHHHHhcCCCCeEEECCcccCCCCCcccCHHHHHHHHHhhhh
Confidence 2222222333 466889999854322 2234677788888887 78999999986531 133222112223356899
Q ss_pred cCcEEecCHHHHHHhhCCC-----CHHHHHHHHHHcCCCccEEEEEcCCC-------ceEEEeCCceEEecCceeeeecc
Q 017305 294 TSDVLLLTSDEAESLTGLR-----NPITAGQELLRKGLRTKWVVVKMGPR-------GSILVTKSSISCAPAFKVLQLQW 361 (374)
Q Consensus 294 ~~Dil~~N~~Ea~~l~g~~-----~~~~~~~~l~~~g~~~~~vvvT~G~~-------Ga~~~~~~~~~~~pa~~v~vVDt 361 (374)
++|++++|++|++.|+|.. +..++++++.+.|. +.||||+|++ |++++++++.+++|++++. +||
T Consensus 152 ~~dil~pN~~E~~~L~g~~~~~~~~~~~~a~~l~~~g~--~~Vvvt~G~~~~~~~~~G~~~~~~~~~~~~~~~~v~-vdt 228 (283)
T 2ddm_A 152 LAQGITPNIFELEILTGKNCRDLDSAIAAAKSLLSDTL--KWVVVTSASGNEENQEMQVVVVTADSVNVISHSRVK-TDL 228 (283)
T ss_dssp GCSEECCBHHHHHHHHTSCCSSHHHHHHHHHHHCCSSC--CEEEEEC-------CEEEEEEEETTEEEEEEEECCC-CCC
T ss_pred hceEecCCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC--CEEEEccccCccCCCceeEEEEeCCceEEEeeceeC-CCC
Confidence 9999999999999999973 46677888888776 7899999999 8999888888889988886 899
Q ss_pred cchhhhhcCCC
Q 017305 362 VVVLVGMWQPW 372 (374)
Q Consensus 362 tGagdaf~~G~ 372 (374)
+|+||+|.+|+
T Consensus 229 ~GAGDaf~a~~ 239 (283)
T 2ddm_A 229 KGTGDLFCAQL 239 (283)
T ss_dssp CCHHHHHHHHH
T ss_pred CChHHHHHHHH
Confidence 99999998764
No 53
>1jxh_A Phosphomethylpyrimidine kinase; THID, ribokinase family, phophorylation, transferase; 2.30A {Salmonella typhimurium} SCOP: c.72.1.2 PDB: 1jxi_A*
Probab=99.69 E-value=5.8e-17 Score=149.49 Aligned_cols=132 Identities=16% Similarity=0.102 Sum_probs=97.5
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCe-EEEcCCCCCC---CCCCCChHHHHHHHh-hhccCcEEecCHHHHHH
Q 017305 233 HSKVLFCNGYGFDELSPALIISALEYAAQVGTS-IFFDPGPRGK---SLSSGTPEEQRALSY-FLSTSDVLLLTSDEAES 307 (374)
Q Consensus 233 ~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~-v~~D~~~~~~---~~~~~~~~~~~~~~~-ll~~~Dil~~N~~Ea~~ 307 (374)
++++++++ + ..+.+.+..+++.+++.+.+ +++||+.+.. .+| .++..+.+.+ +++++|++++|+.|++.
T Consensus 94 ~~~~v~~G-~---l~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~g~~l~--~~~~~~~l~~~ll~~~dil~pN~~Ea~~ 167 (288)
T 1jxh_A 94 RIDTTKIG-M---LAETDIVEAVAERLQRHHVRNVVLDTVMLAKSGDPLL--SPSAIETLRVRLLPQVSLITPNLPEAAA 167 (288)
T ss_dssp CCSEEEEC-C---CCSHHHHHHHHHHHHHTTCCSEEEECCCC------CC--CHHHHHHHHHHTGGGCSEEECBHHHHHH
T ss_pred CCCEEEEC-C---CCCHHHHHHHHHHHHHCCCCeEEEcCcccCCCCCccC--CHHHHHHHHHHHHhhCcEEcCCHHHHHH
Confidence 36888774 2 22678888999999999986 9999987531 133 2333344554 88999999999999999
Q ss_pred hhCC------CCHHHHHHHHHHcCCCccEEEEEcCCCc-----eEEEeCCceEEecCceeeeecccchhhhhcCCC
Q 017305 308 LTGL------RNPITAGQELLRKGLRTKWVVVKMGPRG-----SILVTKSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 308 l~g~------~~~~~~~~~l~~~g~~~~~vvvT~G~~G-----a~~~~~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
|+|. ++.++++++|.++|. +.||||+|++| ++++++++.+++|+++++++||+|+||+|.+++
T Consensus 168 L~g~~~~~~~~~~~~~a~~l~~~g~--~~Vvvt~G~~G~~~~~~~~~~~~~~~~~~~~~~~~vdttGAGD~f~a~~ 241 (288)
T 1jxh_A 168 LLDAPHARTEQEMLAQGRALLAMGC--EAVLMKGGHLEDAQSPDWLFTREGEQRFSAPRVNTKNTHGTGCTLSAAL 241 (288)
T ss_dssp HHTCCCCCSHHHHHHHHHHHHHTTC--SEEEEBC---------CEEECSSCEEEC---CCCCSCCBTHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHHHHHhCC--CEEEEeccCCCCCceeEEEEECCeEEEEeccccCCCCCCCchHHHHHHH
Confidence 9987 245678888998876 78999999999 888888788899999999999999999997653
No 54
>2i5b_A Phosphomethylpyrimidine kinase; ADP complex, PDXK, THID, ribokinase superfamily, transferase; HET: ADP; 2.80A {Bacillus subtilis}
Probab=99.62 E-value=9e-15 Score=133.53 Aligned_cols=134 Identities=16% Similarity=0.097 Sum_probs=103.9
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHHhcCC-eEEEcCCCCCCCCCC-CChHHHHHHH-hhhccCcEEecCHHHHHHhh
Q 017305 233 HSKVLFCNGYGFDELSPALIISALEYAAQVGT-SIFFDPGPRGKSLSS-GTPEEQRALS-YFLSTSDVLLLTSDEAESLT 309 (374)
Q Consensus 233 ~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~-~v~~D~~~~~~~~~~-~~~~~~~~~~-~ll~~~Dil~~N~~Ea~~l~ 309 (374)
+.|+++++ +. .+.+.+..+++.+++.+. ++++||+.+...... ..++..+.+. ++++++|++++|+.|++.|+
T Consensus 74 ~~d~v~~G-~l---~~~~~~~~~~~~~~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~l~~~ll~~~diltpN~~E~~~L~ 149 (271)
T 2i5b_A 74 GVDAMKTG-ML---PTVDIIELAAKTIKEKQLKNVVIDPVMVCKGANEVLYPEHAQALREQLAPLATVITPNLFEASQLS 149 (271)
T ss_dssp CCSEEEEC-CC---CSHHHHHHHHHHHHHTTCSSEEECCCCSSBCSSSBSSHHHHHHHHHHTGGGCSEECCBHHHHHHHH
T ss_pred CCCEEEEC-CC---CCHHHHHHHHHHHHhCCCCCEEEcCCcCCCCCCcCcCHHHHHHHHHHhHhhCcEEcCCHHHHHHHh
Confidence 67888874 32 236788888899999888 599999876432111 1233344554 78899999999999999999
Q ss_pred CCC------CHHHHHHHHHHcCCCccEEEEEcCC--Cce----EEEeCCceEEecCceeeeecccchhhhhcCCC
Q 017305 310 GLR------NPITAGQELLRKGLRTKWVVVKMGP--RGS----ILVTKSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 310 g~~------~~~~~~~~l~~~g~~~~~vvvT~G~--~Ga----~~~~~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
|.. +..++++++.++|. +.||||.|. +|+ +++++++.+++++++++++||+|+||+|.+++
T Consensus 150 g~~~~~~~~~~~~~a~~l~~~g~--~~Vvvt~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~dt~GaGD~f~a~~ 222 (271)
T 2i5b_A 150 GMDELKTVDDMIEAAKKIHALGA--QYVVITGGGKLKHEKAVDVLYDGETAEVLESEMIDTPYTHGAGCTFSAAV 222 (271)
T ss_dssp TCCCCCSHHHHHHHHHHHHTTTC--SEEEEECGGGSCSSSEEEEEECSSCEEEEEECCCCCSCCBTHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCC--CEEEEcCCCCCCCCceEEEEEeCCeEEEEeccccCCCCCCChHHHHHHHH
Confidence 975 46678888988876 789999999 895 67777778889999999999999999997653
No 55
>1ub0_A THID, phosphomethylpyrimidine kinase; thiamin biosynthesis, ribokinase family, phosphorylati structural genomics; 2.05A {Thermus thermophilus} SCOP: c.72.1.2
Probab=99.58 E-value=7e-15 Score=133.23 Aligned_cols=132 Identities=22% Similarity=0.166 Sum_probs=99.9
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHHhcC-CeEEEcCCCCCC---CCCCCChHHHHHH-HhhhccCcEEecCHHHHHH
Q 017305 233 HSKVLFCNGYGFDELSPALIISALEYAAQVG-TSIFFDPGPRGK---SLSSGTPEEQRAL-SYFLSTSDVLLLTSDEAES 307 (374)
Q Consensus 233 ~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g-~~v~~D~~~~~~---~~~~~~~~~~~~~-~~ll~~~Dil~~N~~Ea~~ 307 (374)
+.+++++. +. .+.+.+..+++.+++.+ .++++||+.+.. .+|. ++..+.+ .++++++|++++|+.|++.
T Consensus 70 ~~~~v~~G-~l---~~~~~~~~~~~~~~~~~~~~vv~Dp~~~~~~g~~l~~--~~~~~~~~~~ll~~~dil~pN~~E~~~ 143 (258)
T 1ub0_A 70 PLHAAKTG-AL---GDAAIVEAVAEAVRRFGVRPLVVDPVMVAKSGDPLLA--KEAAAALKERLFPLADLVTPNRLEAEA 143 (258)
T ss_dssp CCSEEEEC-CC---CSHHHHHHHHHHHHHTTCCSEEECCCC---------C--HHHHHHHHHHTGGGCSEECCBHHHHHH
T ss_pred CCCEEEEC-Cc---CCHHHHHHHHHHHHhCCCCcEEECCeeecCCCCcccC--hHHHHHHHHhhcccCeEEeCCHHHHHH
Confidence 46777764 32 25677888888888888 899999986532 1331 2223344 4688999999999999999
Q ss_pred hhCCC-----CHHHHHHHHHHcCCCccEEEEEcCCC-c----eEEEeCCceEEecCceeeeecccchhhhhcCCC
Q 017305 308 LTGLR-----NPITAGQELLRKGLRTKWVVVKMGPR-G----SILVTKSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 308 l~g~~-----~~~~~~~~l~~~g~~~~~vvvT~G~~-G----a~~~~~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
|+|.. +.++++++|.+.|+ +.||||+|++ | ++++++++.+++|+++++++||+|+||+|.+++
T Consensus 144 L~g~~~~~~~~~~~~a~~l~~~g~--~~vvvt~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~dt~GaGD~f~a~~ 216 (258)
T 1ub0_A 144 LLGRPIRTLKEAEEAAKALLALGP--KAVLLKGGHLEGEEAVDLLATRGGVLRFSAPRVHTRNTHGTGCTLSAAI 216 (258)
T ss_dssp HHCSCCCSHHHHHHHHHHHHTTSC--SCEEEEEEECC---EEEEEEETTEEEEEEECCCCCSCCTTHHHHHHHHH
T ss_pred HhCCCCCCHHHHHHHHHHHHHcCC--CEEEEccCCCCCCceEEEEEeCCeEEEEeccccCCCCCCChHHHHHHHH
Confidence 99873 45678888888776 7899999998 9 788888888889999999999999999998754
No 56
>3pzs_A PM kinase, pyridoxamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; HET: MSE; 1.89A {Yersinia pestis} SCOP: c.72.1.5 PDB: 1td2_A* 1vi9_A*
Probab=99.53 E-value=1.3e-14 Score=133.71 Aligned_cols=137 Identities=23% Similarity=0.142 Sum_probs=104.3
Q ss_pred ccCCcEEEEecCCCCCCCHHHHHHHHHHHHhcC--CeEEEcCCCCCC---CCCCCChHHHHHHHh-hhccCcEEecCHHH
Q 017305 231 IKHSKVLFCNGYGFDELSPALIISALEYAAQVG--TSIFFDPGPRGK---SLSSGTPEEQRALSY-FLSTSDVLLLTSDE 304 (374)
Q Consensus 231 l~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g--~~v~~D~~~~~~---~~~~~~~~~~~~~~~-ll~~~Dil~~N~~E 304 (374)
+.+.|++ ++|+.......+.+.++++.+++.+ .++++||..... .+| .++..+.+.+ +++++|++++|+.|
T Consensus 75 l~~~d~v-~~G~l~~~~~~~~v~~~l~~~~~~~~~~~vv~DPVm~~~~~~~~~--~~~~~~~l~~~ll~~~diitpN~~E 151 (289)
T 3pzs_A 75 LKDCDAV-LSGYIGSPEQGSHILAAVAQVKQANPDAWYFCDPVMGHPEKGCIV--APGVAEFFCNEALPASDMIAPNLLE 151 (289)
T ss_dssp GGGCCEE-EECCCSSHHHHHHHHHHHHHHHHHCTTCEEEECCCCEETTTEECS--CHHHHHHHHHTHHHHCSEECCCHHH
T ss_pred ccCCCEE-EECCCCCHHHHHHHHHHHHHHHhhCCCCeEEEcCccccCCCCccc--CHHHHHHHHHHhhccCCEEeCCHHH
Confidence 3578885 6677544444577888888888766 789999853221 123 3555566664 88999999999999
Q ss_pred HHHhhCCC-----CHHHHHHHHHHcCCCccEEEEEcC-CCce-------EEEeCCceEEecCceeee--ecccchhhhhc
Q 017305 305 AESLTGLR-----NPITAGQELLRKGLRTKWVVVKMG-PRGS-------ILVTKSSISCAPAFKVLQ--LQWVVVLVGMW 369 (374)
Q Consensus 305 a~~l~g~~-----~~~~~~~~l~~~g~~~~~vvvT~G-~~Ga-------~~~~~~~~~~~pa~~v~v--VDttGagdaf~ 369 (374)
++.|+|.+ +..+++++|+++|+ +.||||.| .+|+ +++++++.++++++++++ +||+|+||+|.
T Consensus 152 ~~~L~g~~~~~~~~~~~aa~~l~~~g~--~~Vvvt~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dt~GaGD~f~ 229 (289)
T 3pzs_A 152 LEQLSGERVENVEQAVQVARSLCARGP--KVVLVKHLSRAGYHADCFEMLLVTADDAWHICRPLVDFGKRQPVGVGDLTS 229 (289)
T ss_dssp HHHHHTSCCCSHHHHHHHHHHHHTTSC--SEEEECCCGGGSSCTTEEEEEEECSSCEEEEEEECCCCTTSCCTTHHHHHH
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHCC--CEEEEecccCCCCCCCeEEEEEEeCCeEEEEEeeeecCCCCCCCcHHHHHH
Confidence 99999973 45678889998887 78999985 5887 777777788888887777 99999999987
Q ss_pred CCC
Q 017305 370 QPW 372 (374)
Q Consensus 370 ~G~ 372 (374)
+++
T Consensus 230 a~~ 232 (289)
T 3pzs_A 230 GLL 232 (289)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 57
>3mbh_A Putative phosphomethylpyrimidine kinase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE PXL; 2.00A {Bacteroides thetaiotaomicron} PDB: 3mbj_A*
Probab=99.47 E-value=1.7e-13 Score=126.34 Aligned_cols=136 Identities=12% Similarity=-0.004 Sum_probs=103.2
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCC-CCC-CChHHHHHHHhhhccCcEEecCHHHHHHhhC
Q 017305 233 HSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKS-LSS-GTPEEQRALSYFLSTSDVLLLTSDEAESLTG 310 (374)
Q Consensus 233 ~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~-~~~-~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g 310 (374)
+.|.+.+ |+....-..+.+.++++.+++.+.++++||...... +|. ..++..+.+.++++++|++++|+.|++.|+|
T Consensus 77 ~~~aik~-G~l~s~~~i~~v~~~l~~~~~~~~~vv~DPv~~~~g~l~~~~~~~~~~~~~~ll~~adiitpN~~Ea~~L~g 155 (291)
T 3mbh_A 77 QFDAIYT-GYLGSPRQIQIVSDFIKDFRQPDSLIVADPVLGDNGRLYTNFDMEMVKEMRHLITKADVITPNLTELFYLLD 155 (291)
T ss_dssp CCSEEEE-CCCSSTTHHHHHHHHHHHHCCTTCEEEECCCCEETTEECTTCCHHHHHHHHHHGGGCSEECCBHHHHHHHHT
T ss_pred ccCEEEE-CCCCCHHHHHHHHHHHHHhcCCCCcEEECceeeeCCCCCCCCCHHHHHHHHHHhccCCEEeCCHHHHHHHhC
Confidence 6788877 554344445677777777766689999999876421 343 2466667778999999999999999999998
Q ss_pred CC--------CHHHHHHHHHHcCCCccEEEEEcC-------CCceEEEeCC--ceEEecCceeeeecccchhhhhcCCC
Q 017305 311 LR--------NPITAGQELLRKGLRTKWVVVKMG-------PRGSILVTKS--SISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 311 ~~--------~~~~~~~~l~~~g~~~~~vvvT~G-------~~Ga~~~~~~--~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
.. +.++++++|+++|+ +.||||.| ..|+++++++ +.++++++++. +||+|+||+|.+++
T Consensus 156 ~~~~~~~~~~~~~~aa~~L~~~g~--~~Vvvtgg~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~-~dt~GaGD~f~aai 231 (291)
T 3mbh_A 156 EPYKADSTDEELKEYLRLLSDKGP--QVVIITSVPVHDEPHKTSVYAYNRQGNRYWKVTCPYLP-AHYPGTGDTFTSVI 231 (291)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHTSC--SEEEEEEEEETTEEEEEEEEEEETTTTEEEEEEESCCG-GGSTTHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCC--CEEEEEeccccCCCCcEEEEEEeCCCCeEEEEEecccC-CCCCChHHHHHHHH
Confidence 64 35678889999887 78999965 3577888763 46677877775 89999999987653
No 58
>3zs7_A Pyridoxal kinase; transferase, sleeping sickness; HET: ATP; 2.00A {Trypanosoma brucei}
Probab=99.42 E-value=4e-13 Score=124.28 Aligned_cols=136 Identities=14% Similarity=0.048 Sum_probs=96.0
Q ss_pred cCCcEEEEecCCCCCCCHHHHHHHHHHHHhcC------CeEEEcCCCCCC-CCCCCChHHHHHHHhhhccCcEEecCHHH
Q 017305 232 KHSKVLFCNGYGFDELSPALIISALEYAAQVG------TSIFFDPGPRGK-SLSSGTPEEQRALSYFLSTSDVLLLTSDE 304 (374)
Q Consensus 232 ~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g------~~v~~D~~~~~~-~~~~~~~~~~~~~~~ll~~~Dil~~N~~E 304 (374)
.++|+|.+ ||..+....+.+.++++..|+.+ .++++||..... .+|. .++..+.+.++++++|+++||..|
T Consensus 75 ~~~daV~t-G~l~s~~~i~~v~~~l~~~k~~~~~~~~~~~vv~DPVm~d~G~~~~-~~~~~~~~~~Ll~~adiitPN~~E 152 (300)
T 3zs7_A 75 SNYRYILT-GYINNVDIIGRIRDTLKEVRELREKEDKKLTFICDPVMGDDGIMYC-KKEVLDAYRELVPLADIVTPNYFE 152 (300)
T ss_dssp GGCSEEEE-CCCCCHHHHHHHHHHHHHHHHHHHHTTCCCEEEECCCC----------CTHHHHHHHHGGGCSEECCCHHH
T ss_pred ccCCEEEE-CCCCCHHHHHHHHHHHHHHHhhCcCcCCCceEEEccccccCCCeec-CHHHHHHHHHHhhhCCEecCCHHH
Confidence 47887655 76544434466667777776554 789999964431 2332 344566777799999999999999
Q ss_pred HHHhhCCC-----CHHHHHHHHHHcCCCccEEEEEcCCCc-------eEEEeC------CceEEecCceeeeecccchhh
Q 017305 305 AESLTGLR-----NPITAGQELLRKGLRTKWVVVKMGPRG-------SILVTK------SSISCAPAFKVLQLQWVVVLV 366 (374)
Q Consensus 305 a~~l~g~~-----~~~~~~~~l~~~g~~~~~vvvT~G~~G-------a~~~~~------~~~~~~pa~~v~vVDttGagd 366 (374)
++.|+|.+ +.+++++.|+++|+ +.||||.|..| +++..+ ++.++++.+++++ |++|+||
T Consensus 153 a~~L~g~~~~~~~~~~~aa~~L~~~G~--~~Vvvt~g~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~-~~~GtGD 229 (300)
T 3zs7_A 153 ASLLSGVTVNDLSSAILAADWFHNCGV--AHVIIKSFREQENPTHLRFLYSVKEGSEAAVRRFSGVVPYHEG-RYTGTGD 229 (300)
T ss_dssp HHHHHSSCCCSHHHHHHHHHHHHHHTC--SEEEEEEEC---CCSEEEEEEEECCSTTSCCEEEEEEEECCSS-CBTTHHH
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHhCC--CEEEEecCcCCCCCceEEEEEeccccccCCCeEEEEEeccCCC-CCcCHHH
Confidence 99999973 45678899999987 88999999988 333334 4677788777776 8999999
Q ss_pred hhcCCC
Q 017305 367 GMWQPW 372 (374)
Q Consensus 367 af~~G~ 372 (374)
+|.+++
T Consensus 230 ~fsaal 235 (300)
T 3zs7_A 230 VFAACL 235 (300)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998753
No 59
>3h74_A Pyridoxal kinase; PSI-II, structural genomics, prote structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 1.30A {Lactobacillus plantarum} PDB: 3hyo_A* 3ibq_A*
Probab=99.41 E-value=9.6e-13 Score=120.67 Aligned_cols=134 Identities=18% Similarity=0.079 Sum_probs=102.0
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHHhc-CCeEEEcCCCCCC-CCCC-CChHHHHHHHhhhccCcEEecCHHHHHHhh
Q 017305 233 HSKVLFCNGYGFDELSPALIISALEYAAQV-GTSIFFDPGPRGK-SLSS-GTPEEQRALSYFLSTSDVLLLTSDEAESLT 309 (374)
Q Consensus 233 ~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~-g~~v~~D~~~~~~-~~~~-~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~ 309 (374)
+.|.+.+ |+. .+.+.+..+.+..++. +.++++||+.+.. .+|. ..++..+.+.++++++|++++|+.|++.|+
T Consensus 74 ~~daik~-G~l---~s~~~i~~v~~~l~~~~~~~vv~DPv~~~~g~l~~l~~~~~~~~l~~ll~~adiitpN~~Ea~~L~ 149 (282)
T 3h74_A 74 HFDQALI-GYV---GSVALCQQITTYLEQQTLSLLVVDPVLGDLGQLYQGFDQDYVAAMRQLIQQADVILPNTTEAALLT 149 (282)
T ss_dssp CCSEEEE-CCC---CSHHHHHHHHHHHHHSCCSEEEECCCCEETTEECTTCCHHHHHHHHHHGGGCSEECCCHHHHHHHH
T ss_pred ccCEEEE-CCC---CCHHHHHHHHHHHHHCCCCcEEEcCeeecCCCCCCCCCHHHHHHHHHHhccCCEECCCHHHHHHHh
Confidence 6788887 443 2466666666666654 6889999987631 2343 246666777889999999999999999999
Q ss_pred CCC-----CHHHHHHHHHH-cCCCccEEEEEcCC----CceEEEe-CCceEEecCceeeeecccchhhhhcCCC
Q 017305 310 GLR-----NPITAGQELLR-KGLRTKWVVVKMGP----RGSILVT-KSSISCAPAFKVLQLQWVVVLVGMWQPW 372 (374)
Q Consensus 310 g~~-----~~~~~~~~l~~-~g~~~~~vvvT~G~----~Ga~~~~-~~~~~~~pa~~v~vVDttGagdaf~~G~ 372 (374)
|.. +.++++++|.+ .|++ +.|+||.|. .|+++++ +++.++++++++. +||+|+||+|.+++
T Consensus 150 g~~~~~~~~~~~aa~~L~~~~g~~-~~Vvvt~G~~~~~~g~~~~~~~~~~~~~~~~~v~-~dt~GaGD~fsaai 221 (282)
T 3h74_A 150 GAPYQVTPDLEVILPALQAQLKTG-AHAVITDVQRADQIGCAWLDEAGHVQYCGARRLP-GHYNGTGDTLAAVI 221 (282)
T ss_dssp TCCCCSSCCHHHHHHHHHTTSCTT-CEECEEEEEETTEEEEEEECTTSCEEEEEEECCS-SCCTTHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCC-CEEEEEecCCCCceEEEEEeCCCeEEEEEecCCC-CCCcCHHHHHHHHH
Confidence 974 78899999998 6641 579999984 7888885 6667788877775 89999999997653
No 60
>1ekq_A Hydroxyethylthiazole kinase; alpha-beta, transferase; 1.50A {Bacillus subtilis} SCOP: c.72.1.2 PDB: 1ekk_A 1c3q_A 1esj_A 1esq_A*
Probab=99.17 E-value=9.5e-11 Score=106.78 Aligned_cols=133 Identities=16% Similarity=0.091 Sum_probs=91.0
Q ss_pred HhhccCCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhc--cCcEEecCHHHH
Q 017305 228 KTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLS--TSDVLLLTSDEA 305 (374)
Q Consensus 228 ~~~l~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~--~~Dil~~N~~Ea 305 (374)
.+.+..++++++..-.+.....+.+.++++.+++.++++++||..... .+...+...++++ ++|+|+||..|+
T Consensus 53 ~~~~~~a~~lvi~~G~~~~~~~~~~~~~~~~a~~~~~pvVlDp~g~~~-----~~~~~~~~~~ll~~~~~~vitPN~~E~ 127 (272)
T 1ekq_A 53 ADMAKIAGALVLNIGTLSKESVEAMIIAGKSANEHGVPVILDPVGAGA-----TPFRTESARDIIREVRLAAIRGNAAEI 127 (272)
T ss_dssp HHHHHHSSEEEEECTTCCHHHHHHHHHHHHHHHHTTCCEEEECTTBTT-----BHHHHHHHHHHHHHSCCSEEEECHHHH
T ss_pred HHHHHhCCEEEEECCCCCHHHHHHHHHHHHHHHhcCCeEEEeCCCcCc-----ccchHHHHHHHHccCCCeEECCCHHHH
Confidence 344566888888421122222466777888888899999999975421 1111233446676 899999999999
Q ss_pred HHhhCCC--------------CHHHHHHHHHHcCCCccEEEEEcCCCceEEEeCCceEEecCceeeeecccchhhhhc
Q 017305 306 ESLTGLR--------------NPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQWVVVLVGMW 369 (374)
Q Consensus 306 ~~l~g~~--------------~~~~~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDttGagdaf~ 369 (374)
+.|+|.. +..++++.|.+++. ..|++| |..+ ++.++++.++++..+..+.||+|+||+|.
T Consensus 128 ~~L~g~~~~~~~gvd~~~~~~~~~~aa~~l~~~~~--~vVv~~-G~~~-~i~~~~~~~~~~~~~~~~~~ttGaGD~la 201 (272)
T 1ekq_A 128 AHTVGVTDWLIKGVDAGEGGGDIIRLAQQAAQKLN--TVIAIT-GEVD-VIADTSHVYTLHNGHKLLTKVTGAGCLLT 201 (272)
T ss_dssp HHHCC---------------HHHHHHHHHHHHHHT--SEEEEC-SSSE-EEECSSCEEEECCCCGGGGGSTTHHHHHH
T ss_pred HHHhCCCcccccCccCCCCHHHHHHHHHHHHHHcC--CEEEEE-CCCC-EEEeCCEEEEEcCCCccccCccCchHHHH
Confidence 9999854 23467788877742 345555 9887 55566678888887777889999999875
No 61
>3rm5_A Hydroxymethylpyrimidine/phosphomethylpyrimidine K THI20; HMP kinase (THID), thiaminase II, transferase; 2.68A {Saccharomyces cerevisiae}
Probab=99.00 E-value=9e-10 Score=110.02 Aligned_cols=131 Identities=14% Similarity=0.052 Sum_probs=90.7
Q ss_pred CCcEEEEecCCCCCCCHHH---HHHHHHHHHhcCCeEEEcCCCCC---CCCCCCChHHHHHHH-hhhccCcEEecCHHHH
Q 017305 233 HSKVLFCNGYGFDELSPAL---IISALEYAAQVGTSIFFDPGPRG---KSLSSGTPEEQRALS-YFLSTSDVLLLTSDEA 305 (374)
Q Consensus 233 ~~~~v~~~g~~~~~~~~~~---~~~~~~~a~~~g~~v~~D~~~~~---~~~~~~~~~~~~~~~-~ll~~~Dil~~N~~Ea 305 (374)
+.|.|.++ +. +.+. +.++++..++.+.++++||.... ..++ .++..+.+. ++++.+|+|+||..|+
T Consensus 91 ~~daIkiG-~l----s~~~i~~v~~~l~~~~~~~~~vVlDPvm~a~~g~~l~--~~~~~~~l~~~Ll~~a~iitPN~~Ea 163 (550)
T 3rm5_A 91 KCNVIKTG-ML----TAAAIEVLHEKLLQLGENRPKLVVDPVLVATSGSSLA--GKDIVSLITEKVAPFADILTPNIPEC 163 (550)
T ss_dssp CCSEEEEC-SC----CHHHHHHHHHHHHHHGGGSCEEEECCCC-----------CTTHHHHHHHHTGGGCSEECCBHHHH
T ss_pred CCCEEEEC-CC----CHHHHHHHHHHHHHhcccCCCEEEecceecCCCCcCC--CHHHHHHHHHHhhCcceEEecCHHHH
Confidence 67888874 32 4544 44455444445889999997532 1122 233444454 7899999999999999
Q ss_pred HHhhCCC-------CHHHHHHHHHHcCCCccEEEEEcCCCc--------e--EEE--eCCceEEecCceeeeecccchhh
Q 017305 306 ESLTGLR-------NPITAGQELLRKGLRTKWVVVKMGPRG--------S--ILV--TKSSISCAPAFKVLQLQWVVVLV 366 (374)
Q Consensus 306 ~~l~g~~-------~~~~~~~~l~~~g~~~~~vvvT~G~~G--------a--~~~--~~~~~~~~pa~~v~vVDttGagd 366 (374)
+.|+|.. +..++++.|.++|. ++.||||.|..+ + +++ .+++.++++.++++++||+|+||
T Consensus 164 ~~L~g~~~~i~~~~d~~~aa~~L~~~g~-~~~VvvkgG~~~~~g~~~~~~~d~l~~~~~~~~~~~~~~~v~~~~t~GtGD 242 (550)
T 3rm5_A 164 YKLLGEERKVNGLQDIFQIAKDLAKITK-CSNILVKGGHIPWNDEKEKYITDVLFLGAEQKFIIFKGNFVNTTHTHGTGC 242 (550)
T ss_dssp HHHHSCCCCCCSSHHHHHHHHHHHHHHC-CSCEEEEECC-------CCEEEEEEEETTTTEEEEEEEECCCCSCCBTHHH
T ss_pred HHHhCCCCCCCCHHHHHHHHHHHHHhCC-CCEEEEeCCCCCcccCCCCeEEEEEEEcCCCeEEEEEecCcCCCCCcChhH
Confidence 9999963 45678889988863 257999998763 3 455 35567788888888899999999
Q ss_pred hhcCC
Q 017305 367 GMWQP 371 (374)
Q Consensus 367 af~~G 371 (374)
+|.++
T Consensus 243 ~fsaa 247 (550)
T 3rm5_A 243 TLASA 247 (550)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88754
No 62
>1v8a_A Hydroxyethylthiazole kinase; alpha-beta, ATP binding, transferase, structural genomics, riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii} PDB: 3hpd_A
Probab=98.69 E-value=4.4e-08 Score=88.63 Aligned_cols=133 Identities=21% Similarity=0.121 Sum_probs=89.1
Q ss_pred HHHHhhccCCcEEEEecCCCCCCCH---HHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhc-cCcEEec
Q 017305 225 AEVKTAIKHSKVLFCNGYGFDELSP---ALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLS-TSDVLLL 300 (374)
Q Consensus 225 ~~~~~~l~~~~~v~~~g~~~~~~~~---~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~-~~Dil~~ 300 (374)
++..+.+..++++.+.. + -.+. +.+..+++.+++.++++++||..... .....+....+++ .+++++|
T Consensus 48 ~e~~~~~~~~dalvi~~-G--~~~~~~~~~~~~~~~~a~~~~~pvVlDpv~~~~-----~~~~~~~~~~ll~~~~~vITP 119 (265)
T 1v8a_A 48 EELEEMIRLADAVVINI-G--TLDSGWRRSMVKATEIANELGKPIVLDPVGAGA-----TKFRTRVSLEILSRGVDVLKG 119 (265)
T ss_dssp TTHHHHHHHCSEEEEEC-T--TCCHHHHHHHHHHHHHHHHHTCCEEEECTTBTT-----BHHHHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHHCCEEEEEE-C--CCCHHHHHHHHHHHHHHHHcCCcEEEcCccccc-----cccCHHHHHHHHHhCCcEEcC
Confidence 34455567789998852 2 1233 35566777788889999999986431 1111223334443 3899999
Q ss_pred CHHHHHHhhCCC--------------CHHHHHHHHHHcCCCccEEEEEcCCCceEEEeCCceEEecCceeeeecccchhh
Q 017305 301 TSDEAESLTGLR--------------NPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQWVVVLV 366 (374)
Q Consensus 301 N~~Ea~~l~g~~--------------~~~~~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDttGagd 366 (374)
|..|+..|+|.. +..++++++.+++. ..|++| |..+. ++++++.+.++..+....+++|.||
T Consensus 120 N~~E~~~L~g~~~~~~gvd~~~~~~~~~~~aa~~la~~~~--~~Vvlk-G~~d~-i~~~~~~~~~~~g~~~~~~~~GtGD 195 (265)
T 1v8a_A 120 NFGEISALLGEEGKTRGVDSLEYGEEEAKKLTMNAAREFN--TTVAVT-GAVDY-VSDGRRTFAVYNGHELLGRVTGTGC 195 (265)
T ss_dssp EHHHHHHHHHHHC----------CHHHHHHHHHHHHHHTT--SEEEEE-SSSEE-EECSSCEEEECCCCGGGGGSTTHHH
T ss_pred CHHHHHHHhCCcccccCcCcccccHHHHHHHHHHHHHHhC--cEEEEc-CCCcE-EEcCCEEEEEcCCCcCcCCccChhH
Confidence 999999998732 23567788888753 457777 87775 4566677788776555669999888
Q ss_pred hhc
Q 017305 367 GMW 369 (374)
Q Consensus 367 af~ 369 (374)
.|.
T Consensus 196 ~Ls 198 (265)
T 1v8a_A 196 MVA 198 (265)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 63
>3dzv_A 4-methyl-5-(beta-hydroxyethyl)thiazole kinase; NP_816404.1, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.57A {Enterococcus faecalis}
Probab=98.10 E-value=4e-05 Score=69.10 Aligned_cols=133 Identities=16% Similarity=0.076 Sum_probs=83.8
Q ss_pred HHHHhhccCCcEEEEecCCCCCCCH---HHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhh-ccCcEEec
Q 017305 225 AEVKTAIKHSKVLFCNGYGFDELSP---ALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFL-STSDVLLL 300 (374)
Q Consensus 225 ~~~~~~l~~~~~v~~~g~~~~~~~~---~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll-~~~Dil~~ 300 (374)
++..+.++.++.+++.- +-.+. +.+...++.+++.+.++++||..... .....+...+++ ...++|.+
T Consensus 50 ~e~~e~~~~a~alvIn~---G~l~~~~~~~~~~a~~~a~~~~~PvVlDPVg~ga-----s~~r~~~~~~Ll~~~~~VItp 121 (273)
T 3dzv_A 50 REFPQMFQQTSALVLNL---GHLSQEREQSLLAASDYARQVNKLTVVDLVGYGA-----SDIRNEVGEKLVHNQPTVVKG 121 (273)
T ss_dssp GGHHHHHTTCSEEEEEC---CSCCHHHHHHHHHHHHHHHHTTCCEEEECTTTTS-----CHHHHHHHHHHHHTCCSEEEE
T ss_pred HHHHHHHHHCCeEEEec---CCCChHHHHHHHHHHHHHHHcCCcEEEchhhcCC-----cccCHHHHHHHHhcCCcEECC
Confidence 55667778899998873 22333 45666777788899999999986531 111122223333 36899999
Q ss_pred CHHHHHHhhCCC-------------------CHHHHHHHHHHcCCCccEEEEEcCCCceEEEeCCceEEecCceeeeecc
Q 017305 301 TSDEAESLTGLR-------------------NPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQW 361 (374)
Q Consensus 301 N~~Ea~~l~g~~-------------------~~~~~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDt 361 (374)
|..|+..|+|.. +..++++++.+++. ...|++| |..- +++++++.+.++.-+...-.+
T Consensus 122 N~~E~~~L~g~~~~~~GVds~~~~~~~~~~~d~~~aa~~la~~~~-~~~Vvlk-G~~D-~i~dg~~~~~~~~G~~~~~~v 198 (273)
T 3dzv_A 122 NLSEMRTFCQLVSHGRGVDGSPLDQSEEAIEELIQALRQQTQKFP-QTVFLAT-GIQD-VLVSQEQVIVLQNGVPELDCF 198 (273)
T ss_dssp EHHHHHHHTTCCCC-------CGGGSHHHHHHHHHHHHHHHHHST-TCEEEEE-SSSE-EEECSSCEEEECCCCGGGGSS
T ss_pred CHHHHHHHhCCcccccccccccccchhhhhHHHHHHHHHHHHHhC-CeEEEEE-CCee-EEEcCCEEEEeCCCCcccCCc
Confidence 999999999853 12356777877642 1356777 4432 455556667776544444456
Q ss_pred cchhhhh
Q 017305 362 VVVLVGM 368 (374)
Q Consensus 362 tGagdaf 368 (374)
+|.||.|
T Consensus 199 ~GtGc~L 205 (273)
T 3dzv_A 199 TGTGDLV 205 (273)
T ss_dssp TTHHHHH
T ss_pred CCchHHH
Confidence 7755544
No 64
>3bgk_A SMU.573, putative uncharacterized protein; alpha/beta three layer sandwich, unknown function; 2.50A {Streptococcus mutans}
Probab=97.72 E-value=2.3e-05 Score=72.22 Aligned_cols=117 Identities=12% Similarity=0.027 Sum_probs=69.1
Q ss_pred hccCCcEEEEecCCCCCCCH---HHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHh---h-h-ccCcEEecC
Q 017305 230 AIKHSKVLFCNGYGFDELSP---ALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSY---F-L-STSDVLLLT 301 (374)
Q Consensus 230 ~l~~~~~v~~~g~~~~~~~~---~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~---l-l-~~~Dil~~N 301 (374)
.+..++++.++ .++. .+. +.+.++++.++ .+.++++|+.... .+.. + + +..++|+||
T Consensus 122 ~~~~~dav~IG-~Gl~-~~~~~~~~v~~~l~~~~-~~~pvVlDa~g~~------------ll~~~~~l~L~~~~~viTPN 186 (311)
T 3bgk_A 122 QITAADVVLMG-PGLA-EDDLAQTTFDVVWQAIE-PKQTLIIDGSAIN------------LLAKRKPAIWPTKQIILTPH 186 (311)
T ss_dssp HHHHCSEEEEC-TTCC-SSHHHHHHHHHHHHHCC-TTSEEEEETHHHH------------HHHHCC-CCCSCSCEEEECC
T ss_pred HhccCCEEEEc-CCCC-CCHHHHHHHHHHHHHcC-CCCeEEEeCChhh------------hhccChhhcCCCCCEEECCc
Confidence 34567888885 2111 123 33334443322 3789999985321 1111 1 3 468899999
Q ss_pred HHHHHHhhCCC--C----H-HHHHHHHHHcCCCccEEEEEcCCCceEEEeCCceEEecCceeeeecccchhhhh
Q 017305 302 SDEAESLTGLR--N----P-ITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQWVVVLVGM 368 (374)
Q Consensus 302 ~~Ea~~l~g~~--~----~-~~~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDttGagdaf 368 (374)
..|++.|+|.. + . .+++++|.+ + . +|+..| .+.++++ ++.+++.....+..+|+|.||.|
T Consensus 187 ~~E~~~L~g~~~~~~~~d~~~~aa~~l~~-g---~-~VvlkG-~~~~i~~-~~~~~~~~~~~~~~~t~GtGD~L 253 (311)
T 3bgk_A 187 QKEWERLSGLTIPEQIEAATQTALAHFPK-E---T-ILVAKS-HQTKIYQ-GQKIGHIQVGGPYQATGGMGDTL 253 (311)
T ss_dssp SCC-CTTTCCCSTTCCHHHHHHHHTTSCT-T---C-EEEECS-SSCEEEE-TTEEEEECCCCGGGCSTTHHHHH
T ss_pred HHHHHHHhCCCCCcchhhHHHHHHHHHhc-C---C-EEEEeC-CCeEEEE-CCEEEEECCCCCCCCCCcHHHHH
Confidence 99999999863 1 2 344555544 3 2 444445 5677776 44445555667788999988876
No 65
>3rpz_A ADP/ATP-dependent NAD(P)H-hydrate dehydratase; structural genomics, PSI-biology; HET: AMP NPW; 1.51A {Bacillus subtilis} PDB: 3rph_A* 3rq2_A* 3rq5_A* 3rq6_A* 3rq8_A* 3rqh_A* 3rqq_A* 3rqx_A* 1kyh_A
Probab=97.62 E-value=0.00023 Score=64.43 Aligned_cols=120 Identities=12% Similarity=0.035 Sum_probs=77.6
Q ss_pred ccCCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhC
Q 017305 231 IKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTG 310 (374)
Q Consensus 231 l~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g 310 (374)
+..+|++.++ -+++ ..+...++++.+.+.+.++++|........ .......++++||..|++.|+|
T Consensus 96 l~~~davviG-PGlg--~~~~~~~~~~~~l~~~~p~VlDAdal~~~~-----------l~~~~~~~vlTPN~~E~~~L~g 161 (279)
T 3rpz_A 96 EETYRAIAIG-PGLP--QTESVQQAVDHVLTADCPVILDAGALAKRT-----------YPKREGPVILTPHPGEFFRMTG 161 (279)
T ss_dssp SSCCSEEEEC-TTCC--CCHHHHHHHHHHTTSSSCEEECGGGCCSCC-----------CCCCSSCEEECCCHHHHHHHHC
T ss_pred ccCCCEEEEC-CCCC--CCHHHHHHHHHHHhhCCCEEEECCccchhh-----------hhhccCCEEEecCHHHHHHHhC
Confidence 5678999885 2221 123456677777777889999987542100 0112457899999999999999
Q ss_pred CC------CHHHHHHHHHHcCCCccEEEEEcCCCceEEEeCCceEEecCceeeeecccchhhhh
Q 017305 311 LR------NPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQWVVVLVGM 368 (374)
Q Consensus 311 ~~------~~~~~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDttGagdaf 368 (374)
.. +..++++++.+++ + . +|+-.|. +.+++++++.+++.........|+|.||.|
T Consensus 162 ~~~~~~~~d~~~aa~~la~~~-~-~-~VvlKG~-~~vi~~~~g~~~~~~~g~~~~at~GtGD~L 221 (279)
T 3rpz_A 162 VPVNELQKKRAEYAKEWAAQL-Q-T-VIVLKGN-QTVIAFPDGDCWLNPTGNGALAKGGTGDTL 221 (279)
T ss_dssp CCHHHHTTSHHHHHHHHHHHH-T-S-EEEECST-TCEEECTTSCEEECCCCCGGGCSTTHHHHH
T ss_pred CCccchHHHHHHHHHHHHHHc-C-e-EEEEeCC-CcEEECCCceEEEeCCCCCCCCCCChHHHH
Confidence 63 4567788888764 2 2 4444454 455666654555555555677889977754
No 66
>2r3b_A YJEF-related protein; putative kinase in the ribokinase-like superfamily, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Enterococcus faecalis} PDB: 2r3e_A
Probab=97.61 E-value=0.00024 Score=65.41 Aligned_cols=118 Identities=12% Similarity=0.061 Sum_probs=68.0
Q ss_pred hccCCcEEEEecCCCCCCCH---HHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhh--ccCcEEecCHHH
Q 017305 230 AIKHSKVLFCNGYGFDELSP---ALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFL--STSDVLLLTSDE 304 (374)
Q Consensus 230 ~l~~~~~v~~~g~~~~~~~~---~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll--~~~Dil~~N~~E 304 (374)
.+..++++.++ .++. .+. +.+.++++.++ .+.++++|+.... + ...-.+++ +..++|+||..|
T Consensus 108 ~~~~~dav~IG-~Gl~-~~~~~~~~v~~~l~~~~-~~~pvVlDa~g~~--l-------l~~~~~~l~~~~~~viTPN~~E 175 (310)
T 2r3b_A 108 VVEQADVILIG-PGLG-LDATAQQILKMVLAQHQ-KQQWLIIDGSAIT--L-------FSQGNFSLTYPEKVVFTPHQME 175 (310)
T ss_dssp HHHHCSEEEEC-TTCC-SSHHHHHHHHHHHHHCC-TTCEEEEETHHHH--H-------HHHTTCCCSSGGGEEEECCHHH
T ss_pred HhccCCEEEEe-CCCC-CCHHHHHHHHHHHHhcC-CCCcEEEcCCcch--h-------cccchhhhcCCCCEEEcCCHHH
Confidence 34467888885 2211 123 33334443322 4789999985321 0 00000122 367899999999
Q ss_pred HHHhhCCC------CH-HHHHHHHHHcCCCccEEEEEcCCCceEEEeCCceEEecCceeeeecccchhhhh
Q 017305 305 AESLTGLR------NP-ITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQWVVVLVGM 368 (374)
Q Consensus 305 a~~l~g~~------~~-~~~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDttGagdaf 368 (374)
++.|+|.. +. .++++++ ++ +|+..| .+.++++ ++.+++.....+..+|+|.||.|
T Consensus 176 ~~~L~g~~~~~~~~~~a~~aA~~l---g~----~VvlKG-~~~vi~~-~~~~~~~~~g~~~~~t~GtGD~L 237 (310)
T 2r3b_A 176 WQRLSHLPIEQQTLANNQRQQAKL---GS----TIVLKS-HRTTIFH-AGEPFQNTGGNPGMATGGTGDTL 237 (310)
T ss_dssp HHHHHCCCGGGCCHHHHHHHHHHH---TS----EEEECS-TTCEEEC-SSSCEECCCCCGGGCSTTHHHHH
T ss_pred HHHHhCCCCCcccchHHHHHHHHh---Cc----EEEEeC-CceEEEE-CCEEEEECCCCCCCCCCChHHHH
Confidence 99999864 12 3445554 32 444446 5666766 43334455566778899988875
No 67
>3rss_A Putative uncharacterized protein; unknown function, ADP/ATP-dependent NAD(P)H-hydrate dehydrat lyase; HET: NAP; 1.95A {Thermotoga maritima} PDB: 3rrb_A* 2ax3_A* 3rre_A* 3rrj_A* 3rs8_A* 3rs9_A* 3rsf_A* 3rsg_A* 3rrf_A* 3rsq_A* 3rt7_A* 3rt9_A* 3rta_A* 3rtb_A* 3rtc_A* 3rtd_A* 3rte_A* 3rtg_A* 3ru2_A* 3ru3_A*
Probab=97.54 E-value=0.00033 Score=68.67 Aligned_cols=126 Identities=12% Similarity=0.020 Sum_probs=78.6
Q ss_pred HHHhhccCCcEEEEecCCCCCCCHHHHHHHHH-HHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHH
Q 017305 226 EVKTAIKHSKVLFCNGYGFDELSPALIISALE-YAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDE 304 (374)
Q Consensus 226 ~~~~~l~~~~~v~~~g~~~~~~~~~~~~~~~~-~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~E 304 (374)
++.+.+..++++.++. ++ ...+...++++ .+++.++++++|+.... +.. .+. .+..+..++++||..|
T Consensus 313 ~~~~~~~~~davviGp-Gl--g~~~~~~~~~~~~l~~~~~pvVlDadgl~--~l~-----~~l-l~~~~~~~vlTPN~~E 381 (502)
T 3rss_A 313 ECLELSKDVDVVAIGP-GL--GNNEHVREFVNEFLKTLEKPAVIDADAIN--VLD-----TSV-LKERKSPAVLTPHPGE 381 (502)
T ss_dssp HHHHHHTTCSEEEECT-TC--CCSHHHHHHHHHHHHHCCSCEEECHHHHH--TCC-----HHH-HHHCSSCEEECCCHHH
T ss_pred HHHHHhccCCEEEEeC-CC--CCCHHHHHHHHHHHHhcCCCEEEeCcccc--hhc-----HHH-HhccCCCEEEeCCHHH
Confidence 3445678899999863 11 11233344444 45667999999987432 110 111 1223457999999999
Q ss_pred HHHhhCCC------CHHHHHHHHHHcCCCccEEEEEcCCCceEEEeCCceEEecCceeeeecccchhhhh
Q 017305 305 AESLTGLR------NPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQWVVVLVGM 368 (374)
Q Consensus 305 a~~l~g~~------~~~~~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDttGagdaf 368 (374)
++.|+|.. + .++++++.+++ + .+|+..|. +.+++++++.+ +........+|+|.||.|
T Consensus 382 ~~~L~g~~~~~~~~d-~~aa~~la~~~-~--~~VvlKG~-~~vi~~~~~~~-~~~~g~~~~at~GsGD~L 445 (502)
T 3rss_A 382 MARLVKKTVGDVKYN-YELAEEFAKEN-D--CVLVLKSA-TTIVTDGEKTL-FNITGNTGLSKGGSGDVL 445 (502)
T ss_dssp HHHHHTCCHHHHTTC-HHHHHHHHHHH-T--SEEEECSS-SEEEECSSCEE-EECCCCGGGSSTTHHHHH
T ss_pred HHHHhCCCccchHHH-HHHHHHHHHHc-C--CEEEEeCC-CeEEEcCCEEE-EECCCCCccccCCchHHH
Confidence 99999853 4 67788888764 2 25555565 45566666444 333455678899988755
No 68
>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*
Probab=97.52 E-value=0.0019 Score=63.77 Aligned_cols=111 Identities=20% Similarity=0.142 Sum_probs=75.4
Q ss_pred cHHHHhhccC-CcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhc--cCcEEec
Q 017305 224 SAEVKTAIKH-SKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLS--TSDVLLL 300 (374)
Q Consensus 224 ~~~~~~~l~~-~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~--~~Dil~~ 300 (374)
.+++.+..+. ++.++++--.+.. .+.+..+++.+++.++++++||..... .....+...++++ ..++|.+
T Consensus 296 ~~E~~e~~~~~~~alvin~G~l~~--~~~~~~a~~~a~~~~~PvVlDPVg~~a-----~~~r~~~~~~Ll~~~~~~vItp 368 (540)
T 3nl6_A 296 QSEVNDLAAIPHATLLLNTGSVAP--PEMLKAAIRAYNDVKRPIVFDPVGYSA-----TETRLLLNNKLLTFGQFSCIKG 368 (540)
T ss_dssp HHHHHHHTTSTTCEEEEESSCSCC--HHHHHHHHHHHHTTTCCEEEECTTCTT-----SHHHHHHHHHHTTSCCCSEEEE
T ss_pred HHHHHHHHhccCCeEEEeCCCCCH--HHHHHHHHHHHHHcCCCEEEChHHhhc-----ccccHHHHHHHHhhCCCeEECC
Confidence 3566777787 8988886433333 788888888899999999999986532 1222344556776 7899999
Q ss_pred CHHHHHHhhCCC----------------CHHHHHHHHHHcCCCccEEEEEcCCCceEEEeC
Q 017305 301 TSDEAESLTGLR----------------NPITAGQELLRKGLRTKWVVVKMGPRGSILVTK 345 (374)
Q Consensus 301 N~~Ea~~l~g~~----------------~~~~~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~ 345 (374)
|..|++.|+|.. +..++++++.++.- ..|++| |+.- ++.++
T Consensus 369 N~~E~~~L~g~~~~~~~GVds~~~~~~~d~~~aA~~lA~~~~--~vVvlk-G~~D-~I~dg 425 (540)
T 3nl6_A 369 NSSEILGLAELNKERMKGVDASSGISNELLIQATKIVAFKYK--TVAVCT-GEFD-FIADG 425 (540)
T ss_dssp CHHHHHHHTTC--------------CCHHHHHHHHHHHHHTT--SEEEEC-SSSE-EEEEC
T ss_pred CHHHHHHHhCCCcccccccccccccCHHHHHHHHHHHHHHhC--CEEEEc-CCCe-EEECC
Confidence 999999999853 12356777877642 345555 5543 33444
No 69
>3hpd_A Hydroxyethylthiazole kinase; alpha-beta, ATP binding, transferase, ATP-binding, M metal-binding, nucleotide-binding, thiamine biosynthesis; 1.85A {Pyrococcus horikoshii}
Probab=97.36 E-value=0.00043 Score=61.88 Aligned_cols=120 Identities=21% Similarity=0.154 Sum_probs=74.0
Q ss_pred HHHHhhccCCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhh-ccCcEEecCHH
Q 017305 225 AEVKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFL-STSDVLLLTSD 303 (374)
Q Consensus 225 ~~~~~~l~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll-~~~Dil~~N~~ 303 (374)
++..+....++.++++--.+.+...+.+....+.|.+.++++++||..... ...-.+...+++ .+.++|++|..
T Consensus 48 ~E~~e~~~~a~al~iNiGtl~~~~~~~m~~A~~~A~~~~~PvVLDPVg~ga-----s~~R~~~~~~ll~~~~~vIrgN~s 122 (265)
T 3hpd_A 48 EELEEMIRLADAVVINIGTLDSGWRRSMVKATEIANELGKPIVLDPVGAGA-----TKFRTRVSLEILSRGVDVLKGNFG 122 (265)
T ss_dssp TTHHHHHHHCSEEEEECTTCCHHHHHHHHHHHHHHHHHTCCEEEECTTBTT-----BHHHHHHHHHHHHHCCSEEEEEHH
T ss_pred HHHHHHHHHCCeEEEECCCCChHHHHHHHHHHHHHHHcCCCEEEcCCCCCC-----cHHHHHHHHHHHhcCCcEEcCCHH
Confidence 445556667888888742222222345666677888899999999986532 111122333333 36899999999
Q ss_pred HHHHhhCCC--------------CHHHHHHHHHHcCCCccEEEEEcCCCceEEEeCCceEEecC
Q 017305 304 EAESLTGLR--------------NPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPA 353 (374)
Q Consensus 304 Ea~~l~g~~--------------~~~~~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa 353 (374)
|...|.|.. +..++++.+.++. + ..|++| |+. -++.++++.+.++.
T Consensus 123 Ei~~L~g~~~~~~gvds~~~~~~d~~~~a~~lA~~~-~-~vVvlk-G~~-d~I~dg~~~~~~~~ 182 (265)
T 3hpd_A 123 EISALLGEEGKTRGVDSLEYGEEEAKKLTMNAAREF-N-TTVAVT-GAV-DYVSDGRRTFAVYN 182 (265)
T ss_dssp HHHHHHHHHC----------CHHHHHHHHHHHHHHT-T-SEEEEE-SSS-EEEECSSCEEEECC
T ss_pred HHHHHhcccCCCCCccCccccHHHHHHHHHHHHHHh-C-CEEEEe-CCC-eEEEcCCEEEEECC
Confidence 999998631 2346677777763 2 345555 543 45555666666554
No 70
>3drw_A ADP-specific phosphofructokinase; AMP, GLYC kinase, magnesium, metal-binding, transferase, structural G PSI-2, protein structure initiative; HET: AMP; 1.90A {Pyrococcus horikoshii} PDB: 1u2x_A
Probab=96.89 E-value=0.0014 Score=63.12 Aligned_cols=173 Identities=9% Similarity=-0.023 Sum_probs=94.1
Q ss_pred CccccCCcHHHHHHHHHHcCC-CeEEEEEecCchhHHHHHHHHHhcCCcccceeeCCCCC----c-c-cCCCccceeEEE
Q 017305 123 KQYWEAGGNCNVAIAAARLGL-DCVTIGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGV----D-T-SSASYETLLCWV 195 (374)
Q Consensus 123 ~~~~~GG~a~NvA~~larLG~-~~~~v~~vG~D~~G~~i~~~L~~~GVd~~~v~~~~~~~----~-~-~~~~~~T~~~~i 195 (374)
.+...||.|.-+|..++++|. ++.+.+..+... ..+.| ..+|-+-.+ ..+.- + . .+...+.-.-+|
T Consensus 112 ~~~~~GGnA~imAn~La~lg~~~Vi~~~p~~sk~----~~~ll-~~~i~~p~~--e~g~l~l~~~~ea~~~~~~~~iH~I 184 (474)
T 3drw_A 112 EEERLGGQAGIIANTLAGLKIRKVIAYTPFLPKR----LAELF-KKGVLYPVV--ENGELQFKPIQEAYREGDPLKINRI 184 (474)
T ss_dssp SEEEEESHHHHHHHHHHHTTCSEEEECCSCCCHH----HHTTS-CTTEEEEEE--SSSSEEEEEGGGCCCTTCCCCEEEE
T ss_pred ceEecCChHHHHHHHHHHcCCCcEEEecCcCCHH----HHHhc-CCcceeecc--cCCceeecCchhhhccCCCCCcEEE
Confidence 345689999999999999999 477777766543 33333 333322100 00000 0 0 000000112223
Q ss_pred EECCCCC---------------ccccccCCCCCCc-hhhhhhcccHHHHhhccCCcEEEEecCCCCCC------C-H---
Q 017305 196 LVDPSQR---------------HGFCSRADFSKEP-AFSWMNKLSAEVKTAIKHSKVLFCNGYGFDEL------S-P--- 249 (374)
Q Consensus 196 ~~~~~g~---------------r~~~~~~~~~~~~-~~~~~~~l~~~~~~~l~~~~~v~~~g~~~~~~------~-~--- 249 (374)
+-.+.|+ |-+++..... + .....+.+.+.+.+..+++|.++++|+..... . .
T Consensus 185 ~Ey~~G~~~~~~~~~~~aPraNRfI~s~D~~N--~~~l~~~e~f~~~l~e~~~~~d~~vLSGlq~m~~~y~dg~~~~~~l 262 (474)
T 3drw_A 185 FEFRKGLKFKLGDETIEIPNSGRFIVSARFES--ISRIETREDIKPFLGEIGKEVDGAIFSGYQGLRTKYSDGKDANYYL 262 (474)
T ss_dssp EEECTTCEEESSSCEEECCSCEEEEEEECCSG--GGCCSCCTTTGGGHHHHHHHCSEEEECCGGGCCSBCTTSCBHHHHH
T ss_pred EEcCCCCeeecCCceEEccCCCeEEEEcCCCC--HHhccccHHHHHHHHHhhcCCCEEEEeccccccccccccccHHHHH
Confidence 2222222 2222221111 1 11111223333344445799999999975222 1 2
Q ss_pred HHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHH-HHHHHhhhccCcEEecCHHHHHHhhC
Q 017305 250 ALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEE-QRALSYFLSTSDVLLLTSDEAESLTG 310 (374)
Q Consensus 250 ~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~-~~~~~~ll~~~Dil~~N~~Ea~~l~g 310 (374)
+.+.+.++..+..+++|-|...... +.+. ...+..+++++|.+=+||+|+..+.+
T Consensus 263 ~~~~e~i~~l~~~~~~iH~E~As~~------~~~l~~~i~~~i~p~vDSlGmNEqELa~l~~ 318 (474)
T 3drw_A 263 RRAKEDIIEFKEKDVKIHVEFASVQ------DRKLRKKIITNILPFVDSVGIDEAEIAQILS 318 (474)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCCCS------CHHHHHHHHHHTGGGSSEEEEEHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCeEEEEeCccc------cHHHHHHHHHHhcccccccccCHHHHHHHHH
Confidence 2233555555678999999988764 2333 45567899999999999999988765
No 71
>1ua4_A Glucokinase, ADP-dependent glucokinase; transferase; HET: GLC BGC AMP; 1.90A {Pyrococcus furiosus} SCOP: c.72.1.3
Probab=96.46 E-value=0.012 Score=56.72 Aligned_cols=168 Identities=11% Similarity=0.031 Sum_probs=93.1
Q ss_pred ccCCcHHHHHHHHHHcCCCeEE--EEEecCchhHHHHHHHHHhcCCcccceeeCCCC------CcccCCCccceeEEEEE
Q 017305 126 WEAGGNCNVAIAAARLGLDCVT--IGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDG------VDTSSASYETLLCWVLV 197 (374)
Q Consensus 126 ~~GG~a~NvA~~larLG~~~~~--v~~vG~D~~G~~i~~~L~~~GVd~~~v~~~~~~------~~~~~~~~~T~~~~i~~ 197 (374)
..||.+..+|..++.+|.++.+ ++.+|.. +.+.|...+|..-.+ ..+. .-..+ ..+....+|+-
T Consensus 109 ~~GGnA~imAn~la~lg~~~vl~~~~~l~~~-----~~~lf~~~~i~~p~~--~~~~~~l~~~~e~~~-~~~~~iH~I~E 180 (455)
T 1ua4_A 109 RMGGQAGIMANLLGGVYGVPVIVHVPQLSRL-----QANLFLDGPIYVPTL--ENGEVKLIHPKEFSG-DEENCIHYIYE 180 (455)
T ss_dssp EEESHHHHHHHHHTTTTCCCEEECCSCCCHH-----HHTTSCSSSEEEEEE--ETTEEEEECGGGCSC-CCCCCEEEEEE
T ss_pred ccCCcHHHHHHHHHHcCCCEEEEeCCCCCHH-----HHHhcCCCCeEeecc--cCCccccccchhhcc-CCCCCceEEEE
Confidence 6799999999999999999887 7777664 344443234433000 0000 00000 01233445554
Q ss_pred CCCCCcc----------ccccCCCCCCchhhhhhcccHHHHhhccCCcEEEEecCCC-CCCC-HHHHHHHHH---HHHhc
Q 017305 198 DPSQRHG----------FCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGYGF-DELS-PALIISALE---YAAQV 262 (374)
Q Consensus 198 ~~~g~r~----------~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~~~g~~~-~~~~-~~~~~~~~~---~a~~~ 262 (374)
.+.|++- |+...+.. .+.....+.+.+.+.+...++|.++++|+.. .+.+ .+.....++ ..+..
T Consensus 181 f~~G~~~~~~~aPraNRfI~s~D~~-n~~l~~~e~f~~~l~e~~~~~dl~vlSG~q~l~~~~~~~~~~~~l~~i~~L~~~ 259 (455)
T 1ua4_A 181 FPRGFRVFEFEAPRENRFIGSADDY-NTTLFIREEFRESFSEVIKNVQLAILSGLQALTKENYKEPFEIVKSNLEVLNER 259 (455)
T ss_dssp ECTTCEETTEECSSCEEEEEECCSS-GGGTCCCGGGSTTHHHHGGGCSEEEECCGGGCCTTTCHHHHHHHHHHHHHHHHT
T ss_pred cCCCCeecceeccccceeEEecCCC-cccCcccHHHHHHHHhhccCCcEEEEechhcccccchHHHHHHHHHHHHHhcCC
Confidence 4555532 11111110 1111111222233344445699999999975 3322 233322222 23567
Q ss_pred CCeEEEcCCCCCCCCCCCChHH-HHHHHhhhccCcEEecCHHHHHHhh
Q 017305 263 GTSIFFDPGPRGKSLSSGTPEE-QRALSYFLSTSDVLLLTSDEAESLT 309 (374)
Q Consensus 263 g~~v~~D~~~~~~~~~~~~~~~-~~~~~~ll~~~Dil~~N~~Ea~~l~ 309 (374)
+.++-|+..... +.+. ...+ .+++++|.+-+||+|+..+.
T Consensus 260 ~~~iH~ElAs~~------~~~~~~~i~-~ilp~vDSlGmNE~EL~~l~ 300 (455)
T 1ua4_A 260 EIPVHLEFAFTP------DEKVREEIL-NVLGMFYSVGLNEVELASIM 300 (455)
T ss_dssp TCCEEEECCCCC------CHHHHHHHH-HHGGGCSEEEECHHHHHHHH
T ss_pred CceEEEEeCCcc------CHHHHHHHH-hhhccCcccccCHHHHHHHH
Confidence 889999998764 2444 4455 89999999999999997764
No 72
>1l2l_A ADP-dependent glucokinase; ADP glucokinase APO, transferase; 2.00A {Pyrococcus horikoshii} SCOP: c.72.1.3
Probab=96.12 E-value=0.023 Score=54.54 Aligned_cols=167 Identities=11% Similarity=0.043 Sum_probs=87.5
Q ss_pred ccCCcHHHHHHHHHHcCCCeEE--EEEecCchhHHHHHHHHHhcCCcccceeeCCCCCcc--cC---CCccceeEEEEEC
Q 017305 126 WEAGGNCNVAIAAARLGLDCVT--IGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDT--SS---ASYETLLCWVLVD 198 (374)
Q Consensus 126 ~~GG~a~NvA~~larLG~~~~~--v~~vG~D~~G~~i~~~L~~~GVd~~~v~~~~~~~~~--~~---~~~~T~~~~i~~~ 198 (374)
..||.+.-+|..++++|.++.+ ++.+|. ...+.|...+|..-.+ .++.-.. ++ ...+.-.-+|+-.
T Consensus 112 ~mGGnA~imAn~la~lg~~~vl~~~~~~s~-----~~~~l~~~~~i~~p~~--~~g~l~l~~~~e~~~~~~~~iH~I~Ey 184 (457)
T 1l2l_A 112 RMGGQVGIMANLLGGVYGIPVIAHVPQLSE-----LQASLFLDGPIYVPTF--ERGELRLIHPREFRKGEEDCIHYIYEF 184 (457)
T ss_dssp EEESHHHHHHHHHTTTSCCCEEECCSSCCH-----HHHHTSCSSSEEEEC--------CEECGGGC----CCCEEECCEE
T ss_pred ccCchHHHHHHHHHHcCCCEEEEcCCCCCH-----HHHHhcCCCCeEeeec--cCCceeccCchhhccCCCCcceEEEEc
Confidence 7799999999999999999877 555554 3444444233331100 0000000 00 0001112222222
Q ss_pred CCCC-----------ccccccCCCCCCchhhhhhcccHHHHhhccCCcEEEEecCCCCCC--CHH---HHHHHHHHHHhc
Q 017305 199 PSQR-----------HGFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGYGFDEL--SPA---LIISALEYAAQV 262 (374)
Q Consensus 199 ~~g~-----------r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~~~g~~~~~~--~~~---~~~~~~~~a~~~ 262 (374)
+.|+ |-+++.... .+.....+.+.+.+.+...++|.++++|+..... -.+ ...+.++..+..
T Consensus 185 ~~G~~~~~~~aPraNRfI~s~D~~--N~~l~~~e~f~~~l~e~~~~~d~~vlSG~q~l~~~~~~~~~~~~~~~i~~L~~~ 262 (457)
T 1l2l_A 185 PRNFKVLDFEAPRENRFIGAADDY--NPILYVREEWIERFEEIAKRSELAIISGLHPLTQENHGKPIKLVREHLKILNDL 262 (457)
T ss_dssp CTTCEETTEECSSCEEEEEEECSS--GGGTCCCHHHHHSHHHHHTTCSEEEEECCTTCCTTTCHHHHHHHHHHHHHHHHT
T ss_pred CCCCeecceecCCCCeEEEEcCCC--CCCCcccHHHHHHHHhhccCCCEEEEeccccccccchhhhHHHHHHHHHHhcCC
Confidence 2332 222222111 1111111112222333345699999999975333 122 122223333667
Q ss_pred CCeEEEcCCCCCCCCCCCChHH-HHHHHhhhccCcEEecCHHHHHHh
Q 017305 263 GTSIFFDPGPRGKSLSSGTPEE-QRALSYFLSTSDVLLLTSDEAESL 308 (374)
Q Consensus 263 g~~v~~D~~~~~~~~~~~~~~~-~~~~~~ll~~~Dil~~N~~Ea~~l 308 (374)
++++-+...+.. +.+. ...+ .+++++|.+-+||+|+..+
T Consensus 263 ~~~iH~E~As~~------~~~l~~~i~-~ilp~vDSlGmNEqELa~l 302 (457)
T 1l2l_A 263 GIRAHLEFAFTP------DEVVRLEIV-KLLKHFYSVGLNEVELASV 302 (457)
T ss_dssp TCEEEEECCCCS------SHHHHHHHH-HHGGGCSEEEECHHHHHHH
T ss_pred CCeEEEEECCcc------cHHHHHHHH-hhccccccCccCHHHHHHH
Confidence 899999988764 2443 4455 8999999999999999874
No 73
>1gc5_A ADP-dependent glucokinase; ALFA/beta sandwichs, induced-fitting, transferase; HET: ADP; 2.30A {Thermococcus litoralis} SCOP: c.72.1.3
Probab=96.11 E-value=0.049 Score=52.40 Aligned_cols=167 Identities=10% Similarity=0.038 Sum_probs=89.5
Q ss_pred ccCCcHHHHHHHHHHcCCCeEE--EEEecCchhHHHHHHHHHhcCCcccceeeCCCCCc-----ccCCCccceeEEEEEC
Q 017305 126 WEAGGNCNVAIAAARLGLDCVT--IGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVD-----TSSASYETLLCWVLVD 198 (374)
Q Consensus 126 ~~GG~a~NvA~~larLG~~~~~--v~~vG~D~~G~~i~~~L~~~GVd~~~v~~~~~~~~-----~~~~~~~T~~~~i~~~ 198 (374)
..||.+.-+|..++.+|.++.+ ++.+|.. +.+.|...+|.+-. ..++.-. ......+.-.-+|+-.
T Consensus 117 ~mGGnAgimAn~la~lg~~~vl~~~~~~s~~-----~~~l~~~~~i~~p~--~~~g~l~~~~~~ea~~~~~~~iH~I~Ey 189 (467)
T 1gc5_A 117 RIGGQAGIMANLLGGVYRIPTIVHVPQNPKL-----QAELFVDGPIYVPV--FEGNKLKLVHPKDAIAEEEELIHYIYEF 189 (467)
T ss_dssp EEESHHHHHHHHHHHTSCCCEEECCSCCCHH-----HHTTSCSSSEEEEE--ECSSCEEEECGGGSCCSCCCCEEEEEEE
T ss_pred ccCccHHHHHHHHHhcCCCEEEEcCCCCCHH-----HHHhcCCCCeeeee--ccCCceecccchhhccCCCCcceEEEEc
Confidence 7799999999999999999877 5555553 44444423443210 1111000 0000001223333333
Q ss_pred CCCCc-----------cccccCCCCCCchhhhhhcccHHHHhhccCCcEEEEecCCCCCC-----C-H-HHHH---HHHH
Q 017305 199 PSQRH-----------GFCSRADFSKEPAFSWMNKLSAEVKTAIKHSKVLFCNGYGFDEL-----S-P-ALII---SALE 257 (374)
Q Consensus 199 ~~g~r-----------~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~~~g~~~~~~-----~-~-~~~~---~~~~ 257 (374)
+.|.+ -+++..... +.....+.+.+.+.+...++|.++++|+..... . . +.+. +.++
T Consensus 190 ~~G~~~~~~~aPraNRfI~s~D~~N--~~l~~~e~f~~~l~e~~~~~dl~vlSG~q~l~~~y~~g~~~~~~l~~~~~~l~ 267 (467)
T 1gc5_A 190 PRGFQVFDVQAPRENRFIANADDYN--ARVYMRREFREGFEEITRNVELAIISGLQVLKEYYPDGTTYKDVLDRVESHLN 267 (467)
T ss_dssp CSSCEETTEECSSCEEEEEECCSST--TTTCCCHHHHHSHHHHHTTCSEEEECCGGGCCSBCTTSCBHHHHHHHHHHHHH
T ss_pred CCCCeecceeccCCceEEEecCCCC--ccccccHHHHHHHHhhccCCCEEEEechhcccCccCCchhHHHHHHHHHHHHH
Confidence 33432 222221111 111111122222334445699999999975322 1 2 2222 2333
Q ss_pred HHHhcCCeEEEcCCCCCCCCCCCChHH-HHHHHhhhccCcEEecCHHHHHHh
Q 017305 258 YAAQVGTSIFFDPGPRGKSLSSGTPEE-QRALSYFLSTSDVLLLTSDEAESL 308 (374)
Q Consensus 258 ~a~~~g~~v~~D~~~~~~~~~~~~~~~-~~~~~~ll~~~Dil~~N~~Ea~~l 308 (374)
.....++++-+...+.. +.+. ...+ .+++++|.+-+||+|+..+
T Consensus 268 ~l~~~~~~iH~E~As~~------~~~l~~~i~-~ilp~vDSlGmNEqELa~l 312 (467)
T 1gc5_A 268 ILNRYNVKSHFEFAYTA------NRRVREALV-ELLPKFTSVGLNEVELASI 312 (467)
T ss_dssp HHHHTTCEEEEECCCCC------CHHHHHHHH-HHGGGCSEEEECHHHHHHH
T ss_pred hhcCCCCeEEEEECCcc------cHHHHHHHH-hhccccccCccCHHHHHHH
Confidence 32557899999988764 2444 4455 8999999999999999843
No 74
>3k5w_A Carbohydrate kinase; 11206B,helicobacter pylori,PSI-II, NYSGXRC, , structural genomics, protein structure initiative; 2.60A {Helicobacter pylori}
Probab=85.40 E-value=0.43 Score=46.17 Aligned_cols=116 Identities=15% Similarity=0.108 Sum_probs=62.4
Q ss_pred cCCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHHHhhCC
Q 017305 232 KHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAESLTGL 311 (374)
Q Consensus 232 ~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~~l~g~ 311 (374)
.+++.+.+. -+++....+ +.++++ . + ++++|...-. . + .+.+.++...|++||..|++.|+|.
T Consensus 291 ~~~~a~~iG-PGlG~~~~~-l~~~l~---~-~-p~VlDADaL~--~----~----~~~~~~~~~~VlTPh~~E~~rL~g~ 353 (475)
T 3k5w_A 291 NLLSAFALG-MGLENIPKD-FNRWLE---L-A-PCVLDAGVFY--H----K----EILQALEKEAVLTPHPKEFLSLLNL 353 (475)
T ss_dssp SSCSEEEEC-TTCSSCCTT-HHHHHH---H-S-CEEEEGGGGG--S----G----GGGTTTTSSEEEECCHHHHHHHHHH
T ss_pred cCCCEEEEc-CCCCCCHHH-HHHHHh---c-C-CEEEECcccC--C----c----hhhhccCCCEEECCCHHHHHHHhCC
Confidence 567888775 232221223 444442 2 4 8999986421 0 0 1123445568999999999999874
Q ss_pred -----C------CHHHHHHHHHHcCCCccEEEEEcCCCceEEEeCCceEEecCceeeeecccchhhhh
Q 017305 312 -----R------NPITAGQELLRKGLRTKWVVVKMGPRGSILVTKSSISCAPAFKVLQLQWVVVLVGM 368 (374)
Q Consensus 312 -----~------~~~~~~~~l~~~g~~~~~vvvT~G~~Ga~~~~~~~~~~~pa~~v~vVDttGagdaf 368 (374)
+ +..++++++.++..+ ..|++| |..- ++.++++.+..+. ...-..|.|-||.|
T Consensus 354 ~~~~v~~~~~~~d~~~aa~~la~~~g~-~~VvlK-G~~~-vI~~~~~~~~~~~-g~~~mat~GtGdvL 417 (475)
T 3k5w_A 354 VGINISMLELLDNKLEIARDFSQKYPK-VVLLLK-GANT-LIAHQGQVFINIL-GSVALAKAGSGDVL 417 (475)
T ss_dssp TSCCCCTTSGGGSCC--CHHHHHHCTT-EEEEEC-SSSE-EEEETTEEEEECC-CCGGGCSTTHHHHH
T ss_pred ccCCCCcchhHHHHHHHHHHHHHHcCC-eEEEEe-CCCC-EEECCCEEEEECC-CCCCCCCCCHHHHH
Confidence 2 334677888876412 356665 5433 3445544444332 22334467755543
No 75
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=76.53 E-value=20 Score=29.03 Aligned_cols=81 Identities=15% Similarity=0.214 Sum_probs=47.0
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEec-----CHHHHHHhhC
Q 017305 236 VLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLL-----TSDEAESLTG 310 (374)
Q Consensus 236 ~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~-----N~~Ea~~l~g 310 (374)
.|.++| +-.-+.++.+.++++.+++.|..+.+..++... .+.+..+++..|.+.+ +++....+.|
T Consensus 6 ~v~~tG-GEPll~~~~~~~l~~~~~~~g~~~~l~TNG~l~---------~~~~~~l~~~~d~v~isld~~~~~~~~~~~g 75 (182)
T 3can_A 6 GVTFCG-GEPLLHPEFLIDILKRCGQQGIHRAVDTTLLAR---------KETVDEVMRNCELLLIDLKSMDSTVHQTFCD 75 (182)
T ss_dssp CEEECS-STGGGSHHHHHHHHHHHHHTTCCEEEECTTCCC---------HHHHHHHHHTCSEEEEECCCSCHHHHHHHHS
T ss_pred EEEEEc-ccccCCHHHHHHHHHHHHHCCCcEEEECCCCCC---------HHHHHHHHhhCCEEEEECCCCCHHHHHHHhC
Confidence 455555 212233566678888888888888888887531 2344556666776655 3444555665
Q ss_pred CC--CHHHHHHHHHHcCC
Q 017305 311 LR--NPITAGQELLRKGL 326 (374)
Q Consensus 311 ~~--~~~~~~~~l~~~g~ 326 (374)
.. ...+.++.+.+.|.
T Consensus 76 ~~~~~i~~~i~~l~~~g~ 93 (182)
T 3can_A 76 VPNELILKNIRRVAEADF 93 (182)
T ss_dssp SCSHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHhCCC
Confidence 43 22344555556554
No 76
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=70.81 E-value=30 Score=25.70 Aligned_cols=122 Identities=16% Similarity=0.189 Sum_probs=69.3
Q ss_pred HHHHHHHcCCCeEEEEEecCchhHHHHHHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCC
Q 017305 134 VAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSK 213 (374)
Q Consensus 134 vA~~larLG~~~~~v~~vG~D~~G~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~ 213 (374)
+..-+.|.|.++.++-.=-++.--+.-++++++.|||+..+. +.+
T Consensus 18 ivreikrqgvrvvllysdqdekrrrerleefekqgvdvrtve------------------------dke----------- 62 (162)
T 2l82_A 18 IVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDVRTVE------------------------DKE----------- 62 (162)
T ss_dssp HHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEEEECC------------------------SHH-----------
T ss_pred HHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCceeeec------------------------cHH-----------
Confidence 445567778877766554444445556667777777764321 000
Q ss_pred CchhhhhhcccHHHHhhccCCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhh-h
Q 017305 214 EPAFSWMNKLSAEVKTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYF-L 292 (374)
Q Consensus 214 ~~~~~~~~~l~~~~~~~l~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l-l 292 (374)
+ +-+.+ .++++...+-|++.+- ..-..+-+..+++.|+++|+.+++-.+... ++..++.-+++ -
T Consensus 63 --d--freni-reiwerypqldvvviv----ttddkewikdfieeakergvevfvvynnkd------ddrrkeaqqefrs 127 (162)
T 2l82_A 63 --D--FRENI-REIWERYPQLDVVVIV----TTDDKEWIKDFIEEAKERGVEVFVVYNNKD------DDRRKEAQQEFRS 127 (162)
T ss_dssp --H--HHHHH-HHHHHHCTTCCEEEEE----ECCCHHHHHHHHHHHHHTTCEEEEEEECSC------HHHHHHHHHHHCC
T ss_pred --H--HHHHH-HHHHHhCCCCcEEEEE----ecCcHHHHHHHHHHHHhcCcEEEEEecCCC------chhHHHHHHHhhh
Confidence 0 00111 2334445666777654 234578999999999999988766544321 12223333333 2
Q ss_pred ccCcEEecCHHHH
Q 017305 293 STSDVLLLTSDEA 305 (374)
Q Consensus 293 ~~~Dil~~N~~Ea 305 (374)
..+|+-.++..|-
T Consensus 128 dgvdvrtvsdkee 140 (162)
T 2l82_A 128 DGVDVRTVSDKEE 140 (162)
T ss_dssp SSCEEEEESSHHH
T ss_pred cCceeeecCCHHH
Confidence 3578888776654
No 77
>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Probab=57.62 E-value=15 Score=31.24 Aligned_cols=20 Identities=15% Similarity=0.145 Sum_probs=17.8
Q ss_pred HHHHHHHHHHcCCCeEEEEE
Q 017305 131 NCNVAIAAARLGLDCVTIGH 150 (374)
Q Consensus 131 a~NvA~~larLG~~~~~v~~ 150 (374)
+.-.|..|+++|.++.++-.
T Consensus 15 Gl~aA~~la~~g~~v~lie~ 34 (232)
T 2cul_A 15 GAETAFWLAQKGVRVGLLTQ 34 (232)
T ss_dssp HHHHHHHHHHTTCCEEEEES
T ss_pred HHHHHHHHHHCCCCEEEEec
Confidence 67889999999999999875
No 78
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A*
Probab=54.03 E-value=82 Score=26.22 Aligned_cols=84 Identities=14% Similarity=0.226 Sum_probs=51.5
Q ss_pred cEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEec-----CHHHHHHhh
Q 017305 235 KVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLL-----TSDEAESLT 309 (374)
Q Consensus 235 ~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~-----N~~Ea~~l~ 309 (374)
..|.++| +-.-..++.+.++++.+++.|..+.+..++... . .+ +.+.++++.+|.+.+ +++....+.
T Consensus 71 ~~i~~~G-GEP~l~~~~l~~l~~~~~~~~~~i~i~Tng~~~---~-~~---~~~~~l~~~~~~v~isld~~~~~~~~~~~ 142 (245)
T 3c8f_A 71 GGVTASG-GEAILQAEFVRDWFRACKKEGIHTCLDTNGFVR---R-YD---PVIDELLEVTDLVMLDLKQMNDEIHQNLV 142 (245)
T ss_dssp CEEEEEE-SCGGGGHHHHHHHHHHHHTTTCCEEEEECCCCC---C-CC---HHHHHHHHTCSEEEEECCCSSHHHHHHHH
T ss_pred CeEEEEC-CCcCCCHHHHHHHHHHHHHcCCcEEEEeCCCcC---c-CH---HHHHHHHHhCCEEEEeCCCCCHHHhhhcc
Confidence 5666766 222234566789999999999888888876420 0 11 234455555676655 566666666
Q ss_pred CCC--CHHHHHHHHHHcCC
Q 017305 310 GLR--NPITAGQELLRKGL 326 (374)
Q Consensus 310 g~~--~~~~~~~~l~~~g~ 326 (374)
|.. ...+.++.+.+.|.
T Consensus 143 ~~~~~~~~~~i~~l~~~g~ 161 (245)
T 3c8f_A 143 GVSNHRTLEFAKYLANKNV 161 (245)
T ss_dssp SSCSHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHhcCC
Confidence 643 23456666777776
No 79
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2
Probab=52.83 E-value=91 Score=27.10 Aligned_cols=24 Identities=13% Similarity=-0.058 Sum_probs=18.1
Q ss_pred CCcHHHHHHHHHHcCCCeEEEEEe
Q 017305 128 AGGNCNVAIAAARLGLDCVTIGHV 151 (374)
Q Consensus 128 GG~a~NvA~~larLG~~~~~v~~v 151 (374)
|+-|.+++..|.+.|.++..+++-
T Consensus 14 G~iG~~l~~~L~~~g~~V~~~~R~ 37 (313)
T 1qyd_A 14 GYIGKRIVNASISLGHPTYVLFRP 37 (313)
T ss_dssp STTHHHHHHHHHHTTCCEEEECCS
T ss_pred cHHHHHHHHHHHhCCCcEEEEECC
Confidence 555788888888888887766553
No 80
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Probab=52.04 E-value=13 Score=32.94 Aligned_cols=20 Identities=10% Similarity=0.126 Sum_probs=16.6
Q ss_pred HHHHHHHHHHcCCCeEEEEE
Q 017305 131 NCNVAIAAARLGLDCVTIGH 150 (374)
Q Consensus 131 a~NvA~~larLG~~~~~v~~ 150 (374)
+..+|+.++|+|.++.++-.
T Consensus 18 GlsAA~~lar~g~~v~lie~ 37 (304)
T 4fk1_A 18 GLNASLVLGRARKQIALFDN 37 (304)
T ss_dssp HHHHHHHHHHTTCCEEEEEC
T ss_pred HHHHHHHHHHCCCCEEEEeC
Confidence 45778899999999998863
No 81
>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*
Probab=49.35 E-value=1.2e+02 Score=26.60 Aligned_cols=91 Identities=11% Similarity=-0.031 Sum_probs=52.6
Q ss_pred ccCCcEEEEecCCCCCCCHHHHHHHHHHHHhc-CCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEe-cCHHHHHHh
Q 017305 231 IKHSKVLFCNGYGFDELSPALIISALEYAAQV-GTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLL-LTSDEAESL 308 (374)
Q Consensus 231 l~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~-g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~-~N~~Ea~~l 308 (374)
-.++|++-+++....+...+.+..+++..++. ++++++|... ++..+.-.+.++.++++- +|..+ ..
T Consensus 45 ~~GAdiIDIg~~s~~~eE~~rv~~vi~~l~~~~~~pisIDT~~---------~~v~~aal~a~~Ga~iINdvs~~~-d~- 113 (271)
T 2yci_X 45 EKGAHYLDVNTGPTADDPVRVMEWLVKTIQEVVDLPCCLDSTN---------PDAIEAGLKVHRGHAMINSTSADQ-WK- 113 (271)
T ss_dssp HTTCSEEEEECCSCSSCHHHHHHHHHHHHHHHCCCCEEEECSC---------HHHHHHHHHHCCSCCEEEEECSCH-HH-
T ss_pred HCCCCEEEEcCCcCchhHHHHHHHHHHHHHHhCCCeEEEeCCC---------HHHHHHHHHhCCCCCEEEECCCCc-cc-
Confidence 46799999987653333356677777776654 8999999762 222222223334688885 55432 10
Q ss_pred hCCCCHHHHHHHHHHcCCCccEEEEEcCCCc
Q 017305 309 TGLRNPITAGQELLRKGLRTKWVVVKMGPRG 339 (374)
Q Consensus 309 ~g~~~~~~~~~~l~~~g~~~~~vvvT~G~~G 339 (374)
.++.+....+.++ ..|+..+.++|
T Consensus 114 -----~~~~~~~~a~~~~--~vv~m~~d~~G 137 (271)
T 2yci_X 114 -----MDIFFPMAKKYEA--AIIGLTMNEKG 137 (271)
T ss_dssp -----HHHHHHHHHHHTC--EEEEESCBTTB
T ss_pred -----cHHHHHHHHHcCC--CEEEEecCCCC
Confidence 1234444455555 55666665555
No 82
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}
Probab=47.50 E-value=50 Score=29.03 Aligned_cols=47 Identities=23% Similarity=0.142 Sum_probs=31.5
Q ss_pred CCcHHHHHHHHHHcCCCeEEEEEecCchhHHHHHHHHHhcCCcccce
Q 017305 128 AGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQDEGIGMVGM 174 (374)
Q Consensus 128 GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~~~L~~~GVd~~~v 174 (374)
||-+..+|..|++.|.++.++..-.+....+.+.+.+++.|.....+
T Consensus 59 ~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (294)
T 3r3s_A 59 SGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECGRKAVLL 105 (294)
T ss_dssp SHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTTCCEEEC
T ss_pred cHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcCCcEEEE
Confidence 45578999999999999876554323334556667777766655444
No 83
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=46.72 E-value=73 Score=28.43 Aligned_cols=25 Identities=16% Similarity=-0.078 Sum_probs=18.4
Q ss_pred CCcHHHHHHHHHHcCCCeEEEEEec
Q 017305 128 AGGNCNVAIAAARLGLDCVTIGHVG 152 (374)
Q Consensus 128 GG~a~NvA~~larLG~~~~~v~~vG 152 (374)
|+-|..++..|.+.|.++..+++-.
T Consensus 20 G~iG~~l~~~L~~~g~~V~~l~R~~ 44 (346)
T 3i6i_A 20 GFIGQFVATASLDAHRPTYILARPG 44 (346)
T ss_dssp SHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred cHHHHHHHHHHHHCCCCEEEEECCC
Confidence 4447788888888888887777643
No 84
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*
Probab=46.33 E-value=38 Score=29.74 Aligned_cols=47 Identities=21% Similarity=0.118 Sum_probs=31.0
Q ss_pred CCcHHHHHHHHHHcCCCeEEEEEecCchhHHHHHHHHHhcCCccccee
Q 017305 128 AGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQDEGIGMVGMS 175 (374)
Q Consensus 128 GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~~~L~~~GVd~~~v~ 175 (374)
||-+..+|..|++.|.++.++..- .+...+.+.+.+++.|..+..+.
T Consensus 57 ~GIG~aia~~la~~G~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~ 103 (291)
T 3ijr_A 57 SGIGRAVSIAFAKEGANIAIAYLD-EEGDANETKQYVEKEGVKCVLLP 103 (291)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEESS-CHHHHHHHHHHHHTTTCCEEEEE
T ss_pred cHHHHHHHHHHHHCCCEEEEEeCC-chHHHHHHHHHHHhcCCcEEEEE
Confidence 455788999999999987766542 22244556666777776655443
No 85
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=46.08 E-value=29 Score=26.41 Aligned_cols=83 Identities=14% Similarity=0.170 Sum_probs=57.6
Q ss_pred Hhhc-cCCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHH
Q 017305 228 KTAI-KHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAE 306 (374)
Q Consensus 228 ~~~l-~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~ 306 (374)
.++. .+++++.++|+ ++.+.+..+.+.++..++.++.|+.... ..-+..+.+.++.+...++...++
T Consensus 20 ~~~~~~~~~iI~t~Gs----i~~~~l~~I~~~~~~r~VIi~TD~D~~G-------ekIRk~i~~~lp~~~hafi~r~~~- 87 (119)
T 2fcj_A 20 AAVLNEPVVIVCTNGT----ISDARLEELADELEGYDVYLLADADEAG-------EKLRRQFRRMFPEAEHLYIDRAYR- 87 (119)
T ss_dssp HHHBSSCCEEEECCSC----CCHHHHHHHHHHTTTSEEEEECCSSHHH-------HHHHHHHHHHCTTSEEECCCTTTC-
T ss_pred HHhcCCCCCEEEeCCc----cCHHHHHHHHHHhcCCCEEEEECCCccH-------HHHHHHHHHHCCCCcEEeccCCcc-
Confidence 3444 36788888774 5677777777777777888888986432 334666778899999999988764
Q ss_pred HhhCCC--CHHHHHHHHHHcC
Q 017305 307 SLTGLR--NPITAGQELLRKG 325 (374)
Q Consensus 307 ~l~g~~--~~~~~~~~l~~~g 325 (374)
|.+ +++...+.|.+..
T Consensus 88 ---gVE~a~~~~I~~aL~~~~ 105 (119)
T 2fcj_A 88 ---EVAAAPIWHLAQVLLRAR 105 (119)
T ss_dssp ---STTTSCHHHHHHHHHHTT
T ss_pred ---CcccCCHHHHHHHHHhcc
Confidence 544 4666677776653
No 86
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=43.97 E-value=15 Score=33.37 Aligned_cols=19 Identities=32% Similarity=0.377 Sum_probs=16.3
Q ss_pred HHHHHHHHHHcCCCeEEEE
Q 017305 131 NCNVAIAAARLGLDCVTIG 149 (374)
Q Consensus 131 a~NvA~~larLG~~~~~v~ 149 (374)
|.-.|..|++.|.+|.++=
T Consensus 16 Gl~~A~~La~~G~~V~v~E 34 (397)
T 3oz2_A 16 GSTAARYAAKYGLKTLMIE 34 (397)
T ss_dssp HHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHHHCCCcEEEEe
Confidence 5678999999999998884
No 87
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Probab=43.52 E-value=19 Score=35.62 Aligned_cols=20 Identities=15% Similarity=0.250 Sum_probs=15.6
Q ss_pred HHHHHHHHHHcCCCeEEEEE
Q 017305 131 NCNVAIAAARLGLDCVTIGH 150 (374)
Q Consensus 131 a~NvA~~larLG~~~~~v~~ 150 (374)
|.-+|..|++.|.+|.++-+
T Consensus 35 Gl~aA~~Lar~G~~V~LiEr 54 (591)
T 3i3l_A 35 GSVAGLTLHKLGHDVTIYER 54 (591)
T ss_dssp HHHHHHHHHHTTCEEEEECS
T ss_pred HHHHHHHHHcCCCCEEEEcC
Confidence 56778888888888887753
No 88
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=43.19 E-value=33 Score=27.94 Aligned_cols=20 Identities=15% Similarity=0.195 Sum_probs=14.5
Q ss_pred chhHHHHHHHHHhcCCcccc
Q 017305 154 EIYGRFLLDVLQDEGIGMVG 173 (374)
Q Consensus 154 D~~G~~i~~~L~~~GVd~~~ 173 (374)
|.++.++.+.|++.|+++..
T Consensus 22 DtN~~~l~~~L~~~G~~v~~ 41 (172)
T 3kbq_A 22 NTNAAFIGNFLTYHGYQVRR 41 (172)
T ss_dssp CHHHHHHHHHHHHTTCEEEE
T ss_pred eHHHHHHHHHHHHCCCEEEE
Confidence 56777888888887776543
No 89
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=36.01 E-value=43 Score=26.61 Aligned_cols=44 Identities=25% Similarity=0.248 Sum_probs=32.5
Q ss_pred CCc--HHHHHHHHHHcCCCeEEEEEec--------------------CchhHHHHHHHHHhcCCcc
Q 017305 128 AGG--NCNVAIAAARLGLDCVTIGHVG--------------------NEIYGRFLLDVLQDEGIGM 171 (374)
Q Consensus 128 GG~--a~NvA~~larLG~~~~~v~~vG--------------------~D~~G~~i~~~L~~~GVd~ 171 (374)
||+ +.-.|..|+++|.++.++-.-. .....+.+.+.+++.||++
T Consensus 8 GgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~v 73 (180)
T 2ywl_A 8 GGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRLEAHARRYGAEV 73 (180)
T ss_dssp CCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTCSCCCCSTTCTTCCCHHHHHHHHHHHHHHTTCEE
T ss_pred CCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCchhhhccCCCcCCCCHHHHHHHHHHHHHHcCCEE
Confidence 555 6788999999999999997521 1235667778888888865
No 90
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=35.16 E-value=1e+02 Score=28.61 Aligned_cols=94 Identities=15% Similarity=0.183 Sum_probs=59.0
Q ss_pred cCCcEEEEecCC-------CCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHH
Q 017305 232 KHSKVLFCNGYG-------FDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDE 304 (374)
Q Consensus 232 ~~~~~v~~~g~~-------~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~E 304 (374)
.+++++....|- ..++..+.+..+.+.+++.|++++.++-... .++.+..++|++++...+
T Consensus 168 aGa~~vk~q~fkprts~~~f~gl~~egl~~L~~~~~~~Gl~~~te~~d~~------------~~~~l~~~vd~lkIgs~~ 235 (385)
T 3nvt_A 168 KGLKLIRGGAFKPRTSPYDFQGLGLEGLKILKRVSDEYGLGVISEIVTPA------------DIEVALDYVDVIQIGARN 235 (385)
T ss_dssp TTCCEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHHTCEEEEECCSGG------------GHHHHTTTCSEEEECGGG
T ss_pred cCCCeEEcccccCCCChHhhcCCCHHHHHHHHHHHHHcCCEEEEecCCHH------------HHHHHHhhCCEEEECccc
Confidence 467888877653 2235567888888889999999998875322 124455669999987666
Q ss_pred HHH------hhCC-----------C---CHHHHHHHHHHcCCCccEEEEEcCCC
Q 017305 305 AES------LTGL-----------R---NPITAGQELLRKGLRTKWVVVKMGPR 338 (374)
Q Consensus 305 a~~------l~g~-----------~---~~~~~~~~l~~~g~~~~~vvvT~G~~ 338 (374)
... +.+. . +...+++.+.+.|.. +.+++-+|-.
T Consensus 236 ~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~-~i~L~~rG~s 288 (385)
T 3nvt_A 236 MQNFELLKAAGRVDKPILLKRGLSATIEEFIGAAEYIMSQGNG-KIILCERGIR 288 (385)
T ss_dssp TTCHHHHHHHHTSSSCEEEECCTTCCHHHHHHHHHHHHTTTCC-CEEEEECCBC
T ss_pred ccCHHHHHHHHccCCcEEEecCCCCCHHHHHHHHHHHHHcCCC-eEEEEECCCC
Confidence 432 2211 1 235566777776642 4555555543
No 91
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*
Probab=33.64 E-value=37 Score=29.74 Aligned_cols=19 Identities=26% Similarity=0.146 Sum_probs=15.9
Q ss_pred HHHHHHHHHHcCCCeEEEE
Q 017305 131 NCNVAIAAARLGLDCVTIG 149 (374)
Q Consensus 131 a~NvA~~larLG~~~~~v~ 149 (374)
+..+|..|+++|.++.++-
T Consensus 16 Gl~AA~~la~~g~~v~liE 34 (314)
T 4a5l_A 16 AHTAAIYLGRSSLKPVMYE 34 (314)
T ss_dssp HHHHHHHHHHTTCCCEEEC
T ss_pred HHHHHHHHHHCCCCEEEEe
Confidence 4578889999999998884
No 92
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=33.50 E-value=70 Score=27.31 Aligned_cols=40 Identities=5% Similarity=0.118 Sum_probs=33.3
Q ss_pred ccCCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCC
Q 017305 231 IKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGP 272 (374)
Q Consensus 231 l~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~ 272 (374)
-.++|++.++|. .....+.+.++++..|+.+.++++-|+.
T Consensus 29 ~~GtD~i~vGGs--~gvt~~~~~~~v~~ik~~~~Pvvlfp~~ 68 (228)
T 3vzx_A 29 ESGTDAVIIGGS--DGVTEDNVLRMMSKVRRFLVPCVLEVSA 68 (228)
T ss_dssp TSSCSEEEECCC--SCCCHHHHHHHHHHHTTSSSCEEEECSC
T ss_pred HcCCCEEEECCc--CCCCHHHHHHHHHHhhccCCCEEEeCCC
Confidence 356899999986 4567888999999998889999998875
No 93
>3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 4guf_A 4gug_A* 4guh_A* 3nnt_A* 4guj_A* 3m7w_A 3oex_A 4gfs_A* 4gui_A* 1gqn_A 1l9w_A* 1qfe_A*
Probab=32.09 E-value=2.1e+02 Score=25.00 Aligned_cols=95 Identities=15% Similarity=0.121 Sum_probs=53.2
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhc-cCcEEec-----CHHHHHH
Q 017305 234 SKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLS-TSDVLLL-----TSDEAES 307 (374)
Q Consensus 234 ~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~-~~Dil~~-----N~~Ea~~ 307 (374)
++++=+.- ..+.+.+.++++.+++.+++|+..--...... ..++..+.+.+... .+|++++ +.++...
T Consensus 134 ~dyIDvEl----~~~~~~~~~l~~~a~~~~~kvI~S~Hdf~~tP--~~~el~~~~~~~~~~GaDIvKia~~a~s~~Dvl~ 207 (276)
T 3o1n_A 134 VDMIDLEL----FTGDDEVKATVGYAHQHNVAVIMSNHDFHKTP--AAEEIVQRLRKMQELGADIPKIAVMPQTKADVLT 207 (276)
T ss_dssp CSEEEEEG----GGCHHHHHHHHHHHHHTTCEEEEEEEESSCCC--CHHHHHHHHHHHHHTTCSEEEEEECCSSHHHHHH
T ss_pred CCEEEEEC----cCCHHHHHHHHHHHHhCCCEEEEEeecCCCCc--CHHHHHHHHHHHHHcCCCEEEEEecCCChHHHHH
Confidence 68887762 33467788888888888988876432111101 12334445555544 4799987 2333333
Q ss_pred hhCCCCHHHHHHHHHHcCCCccEEEEEcCCCce
Q 017305 308 LTGLRNPITAGQELLRKGLRTKWVVVKMGPRGS 340 (374)
Q Consensus 308 l~g~~~~~~~~~~l~~~g~~~~~vvvT~G~~Ga 340 (374)
|. ++...+.+...+...+.+-+|+.|.
T Consensus 208 Ll------~~~~~~~~~~~~~PlIa~~MG~~G~ 234 (276)
T 3o1n_A 208 LL------TATVEMQERYADRPIITMSMSKTGV 234 (276)
T ss_dssp HH------HHHHHHHHHTCCSCCEEEECSGGGT
T ss_pred HH------HHHHHHHhcCCCCCEEEEECCCchh
Confidence 21 2222333322223678889999984
No 94
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=29.77 E-value=70 Score=29.26 Aligned_cols=49 Identities=16% Similarity=0.034 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcc-CcEEecCHHHHH
Q 017305 246 ELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLST-SDVLLLTSDEAE 306 (374)
Q Consensus 246 ~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~-~Dil~~N~~Ea~ 306 (374)
+++.+....+.+++++.|+.++-.+-. . +.++.+..+ +|++++-..|+.
T Consensus 87 ~l~~e~~~~L~~~~~~~Gi~~~st~~d---------~---~svd~l~~~~v~~~KI~S~~~~ 136 (349)
T 2wqp_A 87 ALNEEDEIKLKEYVESKGMIFISTLFS---------R---AAALRLQRMDIPAYKIGSGECN 136 (349)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEEEEECS---------H---HHHHHHHHHTCSCEEECGGGTT
T ss_pred CCCHHHHHHHHHHHHHhCCeEEEeeCC---------H---HHHHHHHhcCCCEEEECccccc
Confidence 455788888999999999988766531 1 222333344 788888766543
No 95
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*
Probab=29.45 E-value=32 Score=32.21 Aligned_cols=20 Identities=5% Similarity=-0.087 Sum_probs=17.7
Q ss_pred HHHHHHHHHHcC-CCeEEEEE
Q 017305 131 NCNVAIAAARLG-LDCVTIGH 150 (374)
Q Consensus 131 a~NvA~~larLG-~~~~~v~~ 150 (374)
++.+|..|++.| .+|.++-+
T Consensus 35 Gls~A~~La~~G~~~V~vlE~ 55 (448)
T 3axb_A 35 GLAAAYYLKVWSGGSVLVVDA 55 (448)
T ss_dssp HHHHHHHHHHHHCSCEEEEES
T ss_pred HHHHHHHHHhCCCCcEEEEcc
Confidence 678999999999 99999976
No 96
>2re2_A Uncharacterized protein TA1041; dinitrogenase iron-molybdenum cofactor, structural genomics, center for structural genomics; HET: MSE; 1.30A {Thermoplasma acidophilum dsm 1728}
Probab=28.90 E-value=30 Score=26.90 Aligned_cols=38 Identities=11% Similarity=0.270 Sum_probs=30.9
Q ss_pred CCcHHHHHHHHHHcCCCeEEEEEecCchhHHHHHHHHHhcCCcc
Q 017305 128 AGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQDEGIGM 171 (374)
Q Consensus 128 GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~~~L~~~GVd~ 171 (374)
+|.+...+..|+..|.++.+++.+|... .+.|++ ||.+
T Consensus 65 ~g~g~~~~~~L~~~gv~~VI~g~iG~~a-----~~~L~~-GI~v 102 (136)
T 2re2_A 65 AARGVFMLKSALDHGANALVLSEIGSPG-----FNFIKN-KMDV 102 (136)
T ss_dssp SCHHHHHHHHHHHTTCSEEEESCCBHHH-----HHHHTT-TSEE
T ss_pred CCccHHHHHHHHHcCCCEEEECCCCHhH-----HHHHHC-CCEE
Confidence 4566688888999999999999998763 467888 9975
No 97
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=28.63 E-value=57 Score=26.20 Aligned_cols=34 Identities=6% Similarity=-0.022 Sum_probs=20.0
Q ss_pred HHHHHHHHHHcCCCeEEEEEecCchhHHHHHHHHHh
Q 017305 131 NCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQD 166 (374)
Q Consensus 131 a~NvA~~larLG~~~~~v~~vG~D~~G~~i~~~L~~ 166 (374)
+...+..|..+|.++...+.++||. +.|.+.+++
T Consensus 33 ~~~l~~~L~~~G~~v~~~~iv~Dd~--~~i~~~l~~ 66 (169)
T 1y5e_A 33 GQLLHELLKEAGHKVTSYEIVKDDK--ESIQQAVLA 66 (169)
T ss_dssp HHHHHHHHHHHTCEEEEEEEECSSH--HHHHHHHHH
T ss_pred HHHHHHHHHHCCCeEeEEEEeCCCH--HHHHHHHHH
Confidence 3455666666677777777777763 334444443
No 98
>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}
Probab=28.19 E-value=80 Score=28.89 Aligned_cols=48 Identities=10% Similarity=0.131 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcc-CcEEecCHHHH
Q 017305 246 ELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLST-SDVLLLTSDEA 305 (374)
Q Consensus 246 ~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~-~Dil~~N~~Ea 305 (374)
+++.+....+.+++++.|+.++-.+-. . +.++.+..+ +|++++--.|+
T Consensus 74 el~~e~~~~L~~~~~~~Gi~~~st~fD---------~---~svd~l~~~~v~~~KI~S~~~ 122 (350)
T 3g8r_A 74 RLQPEQMQKLVAEMKANGFKAICTPFD---------E---ESVDLIEAHGIEIIKIASCSF 122 (350)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEEEEECS---------H---HHHHHHHHTTCCEEEECSSST
T ss_pred cCCHHHHHHHHHHHHHcCCcEEeccCC---------H---HHHHHHHHcCCCEEEECcccc
Confidence 456788888999999999887766431 1 223333444 88888765543
No 99
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=26.00 E-value=1.2e+02 Score=25.99 Aligned_cols=40 Identities=8% Similarity=0.242 Sum_probs=32.9
Q ss_pred ccCCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCC
Q 017305 231 IKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGP 272 (374)
Q Consensus 231 l~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~ 272 (374)
-.++|++.++|. .....+.+.++++..|+...++++-++.
T Consensus 34 ~~GtDaI~vGgs--~gvt~~~~~~~v~~ik~~~~Piil~p~~ 73 (235)
T 3w01_A 34 MSQTDAIMIGGT--DDVTEDNVIHLMSKIRRYPLPLVLEISN 73 (235)
T ss_dssp TSSCSEEEECCS--SCCCHHHHHHHHHHHTTSCSCEEEECCC
T ss_pred HcCCCEEEECCc--CCcCHHHHHHHHHHhcCcCCCEEEecCC
Confidence 346899999985 4577888999999998888899988875
No 100
>1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A*
Probab=25.39 E-value=3.3e+02 Score=23.49 Aligned_cols=41 Identities=12% Similarity=-0.030 Sum_probs=27.3
Q ss_pred ccCCcEEEEecCCCCCCCHHHHHHHHHHHHhc-CCeEEEcCC
Q 017305 231 IKHSKVLFCNGYGFDELSPALIISALEYAAQV-GTSIFFDPG 271 (374)
Q Consensus 231 l~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~-g~~v~~D~~ 271 (374)
-.++|++-+++-.......+.+.+++...++. ++++++|..
T Consensus 36 ~~GAdiIDIg~g~~~v~~~ee~~rvv~~i~~~~~~pisIDT~ 77 (262)
T 1f6y_A 36 EGGARALDLNVGPAVQDKVSAMEWLVEVTQEVSNLTLCLDST 77 (262)
T ss_dssp HHTCSEEEEBCC----CHHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred HCCCcEEEECCCCCCCChHHHHHHHHHHHHHhCCCeEEEeCC
Confidence 35799999987322222346677777776665 889999976
No 101
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=24.89 E-value=74 Score=29.51 Aligned_cols=48 Identities=15% Similarity=0.193 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhcc-CcEEecCHHHHH
Q 017305 247 LSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLST-SDVLLLTSDEAE 306 (374)
Q Consensus 247 ~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~-~Dil~~N~~Ea~ 306 (374)
++.+....+.+++++.|+.++-.+-. . +.++.+..+ +|++++--.|+.
T Consensus 98 l~~e~~~~L~~~~~~~Gi~~~stpfD---------~---~svd~l~~~~vd~~KIgS~~~~ 146 (385)
T 1vli_A 98 MPAEWILPLLDYCREKQVIFLSTVCD---------E---GSADLLQSTSPSAFKIASYEIN 146 (385)
T ss_dssp SCGGGHHHHHHHHHHTTCEEECBCCS---------H---HHHHHHHTTCCSCEEECGGGTT
T ss_pred CCHHHHHHHHHHHHHcCCcEEEccCC---------H---HHHHHHHhcCCCEEEECccccc
Confidence 44567788888899999887665421 1 222334344 788887766643
No 102
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=24.88 E-value=60 Score=26.42 Aligned_cols=35 Identities=11% Similarity=0.066 Sum_probs=23.3
Q ss_pred cHHHHHHHHHHcCCCeEEEEEecCchhHHHHHHHHHh
Q 017305 130 GNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQD 166 (374)
Q Consensus 130 ~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~~~L~~ 166 (374)
.+...+..+..+|.++...+.++||. +.+.+.+++
T Consensus 41 n~~~L~~~l~~~G~~v~~~~iv~Dd~--~~I~~al~~ 75 (178)
T 2pjk_A 41 SGDIIKQLLIENGHKIIGYSLVPDDK--IKILKAFTD 75 (178)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEECSCH--HHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEEEeCCCH--HHHHHHHHH
Confidence 34556667777888888888888873 345555544
No 103
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Probab=24.69 E-value=1.3e+02 Score=26.22 Aligned_cols=47 Identities=19% Similarity=0.121 Sum_probs=33.1
Q ss_pred CCcHHHHHHHHHHcCCCeEEEEEecCchhHHHHHHHHHhcCCcccceee
Q 017305 128 AGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQDEGIGMVGMSE 176 (374)
Q Consensus 128 GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~~~L~~~GVd~~~v~~ 176 (374)
||-|..+|..|++.|.++.+++. +....+.+.+.+++.|.++..+..
T Consensus 41 ~gIG~~la~~l~~~G~~V~~~~r--~~~~~~~~~~~l~~~~~~~~~~~~ 87 (301)
T 3tjr_A 41 SGIGLATATEFARRGARLVLSDV--DQPALEQAVNGLRGQGFDAHGVVC 87 (301)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEES--CHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CHHHHHHHHHHHHCCCEEEEEEC--CHHHHHHHHHHHHhcCCceEEEEc
Confidence 44578899999999998877665 333456677778777776655543
No 104
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=24.69 E-value=1.8e+02 Score=25.25 Aligned_cols=63 Identities=14% Similarity=0.051 Sum_probs=40.7
Q ss_pred cCCcEEEEecCCCC-------CCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHH
Q 017305 232 KHSKVLFCNGYGFD-------ELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDE 304 (374)
Q Consensus 232 ~~~~~v~~~g~~~~-------~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~E 304 (374)
.++++|..+.|-.. ....+.+..+.+.+++.|.+++-++-... ..+ .+..++|++++...+
T Consensus 49 ~Ga~~vk~~~fkprts~~~~~g~~~egl~~l~~~~~~~Gl~~~te~~d~~---------~~~---~l~~~vd~~kIga~~ 116 (262)
T 1zco_A 49 VGIKVLRGGAFKPRTSPYSFQGYGEKALRWMREAADEYGLVTVTEVMDTR---------HVE---LVAKYSDILQIGARN 116 (262)
T ss_dssp TTCCEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHHTCEEEEECCCGG---------GHH---HHHHHCSEEEECGGG
T ss_pred cCCCEEEEEecccCCCcccccCccHHHHHHHHHHHHHcCCcEEEeeCCHH---------hHH---HHHhhCCEEEECccc
Confidence 45677777655321 12267788888888999999998875321 122 333448999988766
Q ss_pred HH
Q 017305 305 AE 306 (374)
Q Consensus 305 a~ 306 (374)
..
T Consensus 117 ~~ 118 (262)
T 1zco_A 117 SQ 118 (262)
T ss_dssp TT
T ss_pred cc
Confidence 54
No 105
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=24.26 E-value=1.2e+02 Score=24.27 Aligned_cols=23 Identities=13% Similarity=0.029 Sum_probs=11.5
Q ss_pred HHHHHHHHHcCCCeEEEEEecCc
Q 017305 132 CNVAIAAARLGLDCVTIGHVGNE 154 (374)
Q Consensus 132 ~NvA~~larLG~~~~~v~~vG~D 154 (374)
...+..+..+|.++...+.++||
T Consensus 30 ~~l~~~l~~~G~~v~~~~iv~Dd 52 (164)
T 3pzy_A 30 PIITEWLAQQGFSSAQPEVVADG 52 (164)
T ss_dssp HHHHHHHHHTTCEECCCEEECSS
T ss_pred HHHHHHHHHCCCEEEEEEEeCCH
Confidence 34444445555555555555444
No 106
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}
Probab=24.14 E-value=64 Score=30.66 Aligned_cols=33 Identities=27% Similarity=0.501 Sum_probs=0.0
Q ss_pred cCCCCccEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCc-HHHHHHHHHHcCCCeEEE
Q 017305 77 SGVKSIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGG-NCNVAIAAARLGLDCVTI 148 (374)
Q Consensus 77 ~~~~~~~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~-a~NvA~~larLG~~~~~v 148 (374)
..|+++||+||| ||. +..+|..|+++|.++.++
T Consensus 21 ~~m~~~dVvVIG---------------------------------------gG~aGl~aA~~la~~G~~V~li 54 (491)
T 3urh_A 21 QSMMAYDLIVIG---------------------------------------SGPGGYVCAIKAAQLGMKVAVV 54 (491)
T ss_dssp -----CCEEEEC---------------------------------------CSHHHHHHHHHHHHTTCCEEEE
T ss_pred hhcccCCEEEEC---------------------------------------CCHHHHHHHHHHHHCCCeEEEE
No 107
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=24.07 E-value=58 Score=26.28 Aligned_cols=66 Identities=20% Similarity=0.163 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHhcCCcccceeeCCCCCcccCCCccceeEEEEECCCCCccccccCCCCCCchhhhhhcccHHHHhhccC
Q 017305 154 EIYGRFLLDVLQDEGIGMVGMSEDTDGVDTSSASYETLLCWVLVDPSQRHGFCSRADFSKEPAFSWMNKLSAEVKTAIKH 233 (374)
Q Consensus 154 D~~G~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 233 (374)
|.++.++.+.|++.|+++....+.++.. +.+.+.+.+.+.+
T Consensus 27 D~n~~~l~~~L~~~G~~v~~~~iv~Dd~---------------------------------------~~i~~~l~~a~~~ 67 (172)
T 1mkz_A 27 DTSGHYLRDSAQEAGHHVVDKAIVKENR---------------------------------------YAIRAQVSAWIAS 67 (172)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEEEECSCH---------------------------------------HHHHHHHHHHHHS
T ss_pred CccHHHHHHHHHHCCCeEeEEEEeCCCH---------------------------------------HHHHHHHHHHHhc
Q ss_pred --CcEEEEecCCCCCCCHHHHHHHHHHH
Q 017305 234 --SKVLFCNGYGFDELSPALIISALEYA 259 (374)
Q Consensus 234 --~~~v~~~g~~~~~~~~~~~~~~~~~a 259 (374)
+|+|+++|-. +.-..+.+.++++.+
T Consensus 68 ~~~DlVittGG~-g~~~~D~t~ea~~~~ 94 (172)
T 1mkz_A 68 DDVQVVLITGGT-GLTEGDQAPEALLPL 94 (172)
T ss_dssp SSCCEEEEESCC-SSSTTCCHHHHHGGG
T ss_pred CCCCEEEeCCCC-CCCCCCCHHHHHHHH
No 108
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=24.07 E-value=2.4e+02 Score=21.48 Aligned_cols=24 Identities=33% Similarity=0.574 Sum_probs=18.7
Q ss_pred EEEEecC----chhHHHHHHHHHhcCCc
Q 017305 147 TIGHVGN----EIYGRFLLDVLQDEGIG 170 (374)
Q Consensus 147 ~v~~vG~----D~~G~~i~~~L~~~GVd 170 (374)
=|+.+|- ...|..+.+.|.+.|.+
T Consensus 16 ~IavIGaS~~~g~~G~~~~~~L~~~G~~ 43 (138)
T 1y81_A 16 KIALVGASKNPAKYGNIILKDLLSKGFE 43 (138)
T ss_dssp EEEEETCCSCTTSHHHHHHHHHHHTTCE
T ss_pred eEEEEeecCCCCCHHHHHHHHHHHCCCE
Confidence 3666665 67899999999988875
No 109
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=23.76 E-value=82 Score=29.49 Aligned_cols=46 Identities=20% Similarity=0.375 Sum_probs=35.3
Q ss_pred cCCc--HHHHHHHHHHcCCCeEEEEEec------CchhHHHHHHHHHhcCCccc
Q 017305 127 EAGG--NCNVAIAAARLGLDCVTIGHVG------NEIYGRFLLDVLQDEGIGMV 172 (374)
Q Consensus 127 ~GG~--a~NvA~~larLG~~~~~v~~vG------~D~~G~~i~~~L~~~GVd~~ 172 (374)
.||+ +.-+|..++++|.++.++..-. +....+.+.+.|++.||++.
T Consensus 176 iGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~ 229 (455)
T 1ebd_A 176 IGGGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVV 229 (455)
T ss_dssp ECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEE
T ss_pred ECCCHHHHHHHHHHHHcCCcEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEE
Confidence 4655 6788999999999999987532 22356778889999999864
No 110
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Probab=23.71 E-value=94 Score=29.83 Aligned_cols=46 Identities=15% Similarity=0.208 Sum_probs=35.7
Q ss_pred ccCCc--HHHHHHHHHHcCCCeEEEEEec------CchhHHHHHHHHHhcCCccc
Q 017305 126 WEAGG--NCNVAIAAARLGLDCVTIGHVG------NEIYGRFLLDVLQDEGIGMV 172 (374)
Q Consensus 126 ~~GG~--a~NvA~~larLG~~~~~v~~vG------~D~~G~~i~~~L~~~GVd~~ 172 (374)
..||+ +.-+|..++++|.++.++.. + +....+.+.+.|++.||++.
T Consensus 215 VIGgG~ig~E~A~~l~~~G~~Vtlv~~-~~~l~~~d~~~~~~~~~~l~~~GV~v~ 268 (519)
T 3qfa_A 215 VVGASYVALECAGFLAGIGLDVTVMVR-SILLRGFDQDMANKIGEHMEEHGIKFI 268 (519)
T ss_dssp EECCSHHHHHHHHHHHHTTCCEEEEES-SCSSTTSCHHHHHHHHHHHHHTTCEEE
T ss_pred EECCcHHHHHHHHHHHHcCCeEEEEec-ccccccCCHHHHHHHHHHHHHCCCEEE
Confidence 34665 56789999999999999975 2 23467888899999999864
No 111
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}
Probab=23.68 E-value=1.6e+02 Score=24.74 Aligned_cols=45 Identities=16% Similarity=0.128 Sum_probs=29.8
Q ss_pred CCcHHHHHHHHHHcCCCeEEEEEecCchhHHHHHHHHHhcCCcccce
Q 017305 128 AGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQDEGIGMVGM 174 (374)
Q Consensus 128 GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~~~L~~~GVd~~~v 174 (374)
||-+..+|..|++.|.++.++++ +....+.+.+.+++.+.+...+
T Consensus 23 ggiG~~la~~l~~~G~~V~~~~r--~~~~~~~~~~~l~~~~~~~~~~ 67 (260)
T 3awd_A 23 QNIGLACVTALAEAGARVIIADL--DEAMATKAVEDLRMEGHDVSSV 67 (260)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEES--CHHHHHHHHHHHHHTTCCEEEE
T ss_pred chHHHHHHHHHHHCCCEEEEEeC--CHHHHHHHHHHHHhcCCceEEE
Confidence 45578999999999998877764 2223445666676666554444
No 112
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}
Probab=23.40 E-value=1.3e+02 Score=26.49 Aligned_cols=48 Identities=17% Similarity=0.187 Sum_probs=30.4
Q ss_pred CCcHHHHHHHHHHcCCCeEEEEEec----------CchhHHHHHHHHHhcCCccccee
Q 017305 128 AGGNCNVAIAAARLGLDCVTIGHVG----------NEIYGRFLLDVLQDEGIGMVGMS 175 (374)
Q Consensus 128 GG~a~NvA~~larLG~~~~~v~~vG----------~D~~G~~i~~~L~~~GVd~~~v~ 175 (374)
||-+..+|..|++.|.++.++..-. +....+...+.+++.|..+..+.
T Consensus 56 ~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (317)
T 3oec_A 56 RGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQ 113 (317)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEE
Confidence 4557889999999999988876531 12233445556666665554443
No 113
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*
Probab=22.84 E-value=3.5e+02 Score=23.33 Aligned_cols=24 Identities=8% Similarity=-0.003 Sum_probs=18.6
Q ss_pred CCcHHHHHHHHHHcCCCeEEEEEe
Q 017305 128 AGGNCNVAIAAARLGLDCVTIGHV 151 (374)
Q Consensus 128 GG~a~NvA~~larLG~~~~~v~~v 151 (374)
|+-|..++..|.+.|.++..+++-
T Consensus 21 G~iG~~l~~~L~~~g~~V~~l~R~ 44 (318)
T 2r6j_A 21 GYIGNHMVKGSLKLGHPTYVFTRP 44 (318)
T ss_dssp STTHHHHHHHHHHTTCCEEEEECT
T ss_pred chHHHHHHHHHHHCCCcEEEEECC
Confidence 566788888888889888776653
No 114
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=22.79 E-value=46 Score=26.65 Aligned_cols=21 Identities=14% Similarity=0.061 Sum_probs=9.6
Q ss_pred HHHHHHHcCCCeEEEEEecCc
Q 017305 134 VAIAAARLGLDCVTIGHVGNE 154 (374)
Q Consensus 134 vA~~larLG~~~~~v~~vG~D 154 (374)
.+..|..+|.++...+.++||
T Consensus 26 l~~~l~~~G~~v~~~~iv~Dd 46 (164)
T 2is8_A 26 IREVLAGGPFEVAAYELVPDE 46 (164)
T ss_dssp HHHHHTTSSEEEEEEEEECSC
T ss_pred HHHHHHHCCCeEeEEEEcCCC
Confidence 333444444444444444444
No 115
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=22.63 E-value=3.4e+02 Score=22.69 Aligned_cols=81 Identities=10% Similarity=0.063 Sum_probs=47.7
Q ss_pred hhccCCcEEEEecCCCC----CCCH---HHHHHHHHHHHh--cCCeEEEcCCCCCCCCCCCChHHHHHHHhhhc-cCcEE
Q 017305 229 TAIKHSKVLFCNGYGFD----ELSP---ALIISALEYAAQ--VGTSIFFDPGPRGKSLSSGTPEEQRALSYFLS-TSDVL 298 (374)
Q Consensus 229 ~~l~~~~~v~~~g~~~~----~~~~---~~~~~~~~~a~~--~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~-~~Dil 298 (374)
..+..+|++++.+.... ...+ +.+.++-+...+ .+.++.+|-+-...+ +.++.. .+|++
T Consensus 130 ~~~~~~D~v~~msv~pg~ggq~~~~~~~~~i~~lr~~~~~~~~~~~I~v~GGI~~~~-----------~~~~~~aGad~v 198 (230)
T 1tqj_A 130 YVLPVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNN-----------TWQVLEAGANAI 198 (230)
T ss_dssp TTGGGCSEEEEESSCC----CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCCTTT-----------THHHHHHTCCEE
T ss_pred HHHhcCCEEEEEEeccccCCccCcHHHHHHHHHHHHHHHhcCCCCcEEEECCcCHHH-----------HHHHHHcCCCEE
Confidence 34557888877655331 1222 333333322222 268899998744322 234554 79999
Q ss_pred ecCHHHHHHhhCCCCHHHHHHHHHHc
Q 017305 299 LLTSDEAESLTGLRNPITAGQELLRK 324 (374)
Q Consensus 299 ~~N~~Ea~~l~g~~~~~~~~~~l~~~ 324 (374)
..- ..+++.+|+.++++.|.+.
T Consensus 199 vvG----Sai~~a~d~~~~~~~l~~~ 220 (230)
T 1tqj_A 199 VAG----SAVFNAPNYAEAIAGVRNS 220 (230)
T ss_dssp EES----HHHHTSSCHHHHHHHHHTC
T ss_pred EEC----HHHHCCCCHHHHHHHHHHH
Confidence 987 3466777899999988763
No 116
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*
Probab=22.57 E-value=75 Score=29.93 Aligned_cols=46 Identities=24% Similarity=0.325 Sum_probs=35.4
Q ss_pred cCCc--HHHHHHHHHHcCCCeEEEEEec------CchhHHHHHHHHHhcCCccc
Q 017305 127 EAGG--NCNVAIAAARLGLDCVTIGHVG------NEIYGRFLLDVLQDEGIGMV 172 (374)
Q Consensus 127 ~GG~--a~NvA~~larLG~~~~~v~~vG------~D~~G~~i~~~L~~~GVd~~ 172 (374)
.||+ +.-+|..++++|.++.++..-. +....+.+.+.|++.||++.
T Consensus 175 iGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~ 228 (464)
T 2eq6_A 175 IGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQGDPETAALLRRALEKEGIRVR 228 (464)
T ss_dssp ECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEE
T ss_pred ECCCHHHHHHHHHHHHCCCeEEEEEcCCccccccCHHHHHHHHHHHHhcCCEEE
Confidence 4665 6778999999999999987532 23467788899999999864
No 117
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*
Probab=22.41 E-value=67 Score=29.45 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=17.2
Q ss_pred HHHHHHHHHHcCCCeEEEEE
Q 017305 131 NCNVAIAAARLGLDCVTIGH 150 (374)
Q Consensus 131 a~NvA~~larLG~~~~~v~~ 150 (374)
+.-.|..|++.|.+|.++=+
T Consensus 35 Gl~~A~~La~~G~~V~v~E~ 54 (407)
T 3rp8_A 35 GLSAAVALKQSGIDCDVYEA 54 (407)
T ss_dssp HHHHHHHHHHTTCEEEEEES
T ss_pred HHHHHHHHHhCCCCEEEEeC
Confidence 67889999999999888864
No 118
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}
Probab=22.30 E-value=72 Score=30.24 Aligned_cols=49 Identities=18% Similarity=0.241 Sum_probs=0.0
Q ss_pred CcCCCCCCcchhhhcccCCC--CccEEEECCeeEEEeecCCCCCCCchhhHHHHhhhhhcCCCCCccccCCc-HHHHHHH
Q 017305 61 PSNSQNGTAHDWKLRSSGVK--SIDVATLGNLCVDIVLNVPQLPPPSRDARKAYMDQLSASPPDKQYWEAGG-NCNVAIA 137 (374)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~--~~~vlviG~~~~D~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~GG~-a~NvA~~ 137 (374)
..++..............|+ .+||+||| ||. +..+|..
T Consensus 4 ~~~~~~~~~~~~~~~~~~M~~~~~DVvVIG---------------------------------------gG~aGl~aA~~ 44 (484)
T 3o0h_A 4 HHHHHMGTLEAQTQGPGSMGSFDFDLFVIG---------------------------------------SGSGGVRAARL 44 (484)
T ss_dssp --------------------CCSEEEEEEC---------------------------------------CSHHHHHHHHH
T ss_pred ccccccCcccccCcCCCCCCcCCCCEEEEC---------------------------------------cCHHHHHHHHH
Q ss_pred HHHcCCCeEEE
Q 017305 138 AARLGLDCVTI 148 (374)
Q Consensus 138 larLG~~~~~v 148 (374)
|++.|.+|.++
T Consensus 45 la~~G~~V~li 55 (484)
T 3o0h_A 45 AGALGKRVAIA 55 (484)
T ss_dssp HHHTTCCEEEE
T ss_pred HHhCcCEEEEE
No 119
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Probab=22.26 E-value=87 Score=30.07 Aligned_cols=20 Identities=20% Similarity=0.247 Sum_probs=17.2
Q ss_pred HHHHHHHHHHcCCCeEEEEE
Q 017305 131 NCNVAIAAARLGLDCVTIGH 150 (374)
Q Consensus 131 a~NvA~~larLG~~~~~v~~ 150 (374)
+..+|..|+++|.++.++-+
T Consensus 44 Gl~aA~~la~~G~~V~liEk 63 (519)
T 3qfa_A 44 GLAAAKEAAQYGKKVMVLDF 63 (519)
T ss_dssp HHHHHHHHHHTTCCEEEECC
T ss_pred HHHHHHHHHhCCCeEEEEec
Confidence 56788899999999999974
No 120
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=21.87 E-value=63 Score=29.92 Aligned_cols=19 Identities=21% Similarity=0.198 Sum_probs=14.1
Q ss_pred HHHHHHHHHHcCCCeEEEE
Q 017305 131 NCNVAIAAARLGLDCVTIG 149 (374)
Q Consensus 131 a~NvA~~larLG~~~~~v~ 149 (374)
+..+|+.|++.|.+|.++-
T Consensus 16 Gl~aA~~la~~G~~V~vlE 34 (401)
T 2gqf_A 16 GLFCAAQLAKLGKSVTVFD 34 (401)
T ss_dssp HHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHHhCCCCEEEEe
Confidence 5677778888888777764
No 121
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=21.68 E-value=98 Score=25.39 Aligned_cols=22 Identities=14% Similarity=0.024 Sum_probs=10.0
Q ss_pred HHHHHHHHcCCCeEEEEEecCc
Q 017305 133 NVAIAAARLGLDCVTIGHVGNE 154 (374)
Q Consensus 133 NvA~~larLG~~~~~v~~vG~D 154 (374)
..+..+..+|.++...+.++||
T Consensus 53 ~L~~~L~~~G~~v~~~~iv~Dd 74 (185)
T 3rfq_A 53 LVTELLTEAGFVVDGVVAVEAD 74 (185)
T ss_dssp HHHHHHHHTTEEEEEEEEECSC
T ss_pred HHHHHHHHCCCEEEEEEEeCCC
Confidence 3344444444444444444444
No 122
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*
Probab=21.65 E-value=86 Score=29.76 Aligned_cols=46 Identities=22% Similarity=0.330 Sum_probs=35.3
Q ss_pred cCCc--HHHHHHHHHHcCCCeEEEEEec-------CchhHHHHHHHHHhcCCccc
Q 017305 127 EAGG--NCNVAIAAARLGLDCVTIGHVG-------NEIYGRFLLDVLQDEGIGMV 172 (374)
Q Consensus 127 ~GG~--a~NvA~~larLG~~~~~v~~vG-------~D~~G~~i~~~L~~~GVd~~ 172 (374)
.||+ +.-+|..++++|.++.++..-. +....+.+.+.|++.||++.
T Consensus 200 IGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~ 254 (490)
T 2bc0_A 200 VGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLA 254 (490)
T ss_dssp ECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHTTTCEEE
T ss_pred ECCCHHHHHHHHHHHHCCCeEEEEEcccchhhhHHHHHHHHHHHHHHHhCCeEEE
Confidence 4665 6788999999999999997532 23356788899999999863
No 123
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}
Probab=21.57 E-value=1.4e+02 Score=25.35 Aligned_cols=46 Identities=15% Similarity=0.044 Sum_probs=31.0
Q ss_pred CCcHHHHHHHHHHcCCCeEEEEEecCchhHHHHHHHHHhcCCccccee
Q 017305 128 AGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQDEGIGMVGMS 175 (374)
Q Consensus 128 GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~~~L~~~GVd~~~v~ 175 (374)
||-|..+|..|++.|.++.++++ +....+.+.+.+.+.|.....+.
T Consensus 39 ~gIG~~la~~l~~~G~~V~~~~r--~~~~~~~~~~~~~~~~~~~~~~~ 84 (262)
T 3rkr_A 39 RGIGAAIARKLGSLGARVVLTAR--DVEKLRAVEREIVAAGGEAESHA 84 (262)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEES--CHHHHHHHHHHHHHTTCEEEEEE
T ss_pred ChHHHHHHHHHHHCCCEEEEEEC--CHHHHHHHHHHHHHhCCceeEEE
Confidence 44578899999999999777654 22344566677777665554443
No 124
>1eo1_A Hypothetical protein MTH1175; mixed A/B protein, mixed beta sheet, strand order 321456; NMR {Methanothermobacterthermautotrophicus} SCOP: c.55.5.1
Probab=21.52 E-value=41 Score=25.36 Aligned_cols=38 Identities=26% Similarity=0.398 Sum_probs=29.5
Q ss_pred CcHHHHHHHHHHcCCCeEEEEEecCchhHHHHHHHHHhcCCcc
Q 017305 129 GGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQDEGIGM 171 (374)
Q Consensus 129 G~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~~~L~~~GVd~ 171 (374)
|.+...+..|+..|.++.+++.+|.. ..+.|++.||.+
T Consensus 52 g~g~~~~~~l~~~gv~~vi~~~iG~~-----a~~~L~~~GI~v 89 (124)
T 1eo1_A 52 GAGIRTAQIIANNGVKAVIASSPGPN-----AFEVLNELGIKI 89 (124)
T ss_dssp SCSTTHHHHHHHTTCCEEEECCSSHH-----HHHHHHHHTCEE
T ss_pred CCCHHHHHHHHHCCCCEEEECCcCHH-----HHHHHHHCCCEE
Confidence 34457778888899999999988765 456788889875
No 125
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Probab=21.47 E-value=82 Score=30.06 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=17.6
Q ss_pred HHHHHHHHHHcCCCeEEEEE
Q 017305 131 NCNVAIAAARLGLDCVTIGH 150 (374)
Q Consensus 131 a~NvA~~larLG~~~~~v~~ 150 (374)
++.+|+.|++.|.+|.++-+
T Consensus 15 G~~~A~~La~~G~~V~llE~ 34 (501)
T 2qcu_A 15 GAGIAADAAGRGLSVLMLEA 34 (501)
T ss_dssp HHHHHHHHHHTTCCEEEECS
T ss_pred HHHHHHHHHhCCCCEEEEEC
Confidence 77899999999999998865
No 126
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=21.38 E-value=83 Score=29.57 Aligned_cols=46 Identities=11% Similarity=0.235 Sum_probs=35.4
Q ss_pred cCCc--HHHHHHHHHHcCCCeEEEEEec------CchhHHHHHHHHHhcCCccc
Q 017305 127 EAGG--NCNVAIAAARLGLDCVTIGHVG------NEIYGRFLLDVLQDEGIGMV 172 (374)
Q Consensus 127 ~GG~--a~NvA~~larLG~~~~~v~~vG------~D~~G~~i~~~L~~~GVd~~ 172 (374)
.||+ +.-+|..++++|.++.++..-. +....+.+.+.|++.||++.
T Consensus 183 iGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~ 236 (470)
T 1dxl_A 183 IGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFK 236 (470)
T ss_dssp SCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHSSCCEE
T ss_pred ECCCHHHHHHHHHHHHcCCcEEEEEcCCcccccccHHHHHHHHHHHHHcCCEEE
Confidence 4665 6788999999999999887532 22467788899999999864
No 127
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Probab=21.37 E-value=96 Score=28.19 Aligned_cols=46 Identities=13% Similarity=0.173 Sum_probs=35.0
Q ss_pred cCCc--HHHHHHHHHHcCCCeEEEEEec-------CchhHHHHHHHHHhcCCccc
Q 017305 127 EAGG--NCNVAIAAARLGLDCVTIGHVG-------NEIYGRFLLDVLQDEGIGMV 172 (374)
Q Consensus 127 ~GG~--a~NvA~~larLG~~~~~v~~vG-------~D~~G~~i~~~L~~~GVd~~ 172 (374)
.||+ +.-+|..++++|.++.++..-. +....+.+.+.+++.||++.
T Consensus 151 iGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~gv~i~ 205 (384)
T 2v3a_A 151 LGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFH 205 (384)
T ss_dssp ECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHTTTCEEE
T ss_pred ECCCHHHHHHHHHHHhCCCeEEEEecCcchhhcccCHHHHHHHHHHHHHcCCEEE
Confidence 4655 6788999999999999887532 22357888899999998753
No 128
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=21.31 E-value=1.7e+02 Score=24.75 Aligned_cols=46 Identities=13% Similarity=0.015 Sum_probs=31.6
Q ss_pred CcHHHHHHHHHHcCCCeEEEEEecCchhHHHHHHHHHhcCCccccee
Q 017305 129 GGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQDEGIGMVGMS 175 (374)
Q Consensus 129 G~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~~~L~~~GVd~~~v~ 175 (374)
|-+..+|..|++.|.++.++..-.. ...+...+.+++.|.....+.
T Consensus 19 GIG~aia~~la~~G~~V~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 64 (259)
T 3edm_A 19 DIGRACAIRFAQEGANVVLTYNGAA-EGAATAVAEIEKLGRSALAIK 64 (259)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECSSC-HHHHHHHHHHHTTTSCCEEEE
T ss_pred hHHHHHHHHHHHCCCEEEEEcCCCH-HHHHHHHHHHHhcCCceEEEE
Confidence 4477899999999999877654333 345666777777776655443
No 129
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...
Probab=21.06 E-value=1.3e+02 Score=25.93 Aligned_cols=46 Identities=17% Similarity=0.034 Sum_probs=28.5
Q ss_pred CCcHHHHHHHHHHcCCCeEEEEEecCchhHHHHHHHHH-hcCCcccce
Q 017305 128 AGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQ-DEGIGMVGM 174 (374)
Q Consensus 128 GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~~~L~-~~GVd~~~v 174 (374)
||-+..+|..|++.|.++.++++-.. ...+.+.+.++ +.|.....+
T Consensus 33 ~gIG~aia~~L~~~G~~V~~~~r~~~-~~~~~~~~~l~~~~~~~~~~~ 79 (288)
T 2x9g_A 33 KRIGRAIAVKLHQTGYRVVIHYHNSA-EAAVSLADELNKERSNTAVVC 79 (288)
T ss_dssp SHHHHHHHHHHHHHTCEEEEEESSCH-HHHHHHHHHHHHHSTTCEEEE
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCCch-HHHHHHHHHHHhhcCCceEEE
Confidence 34478899999999998877765221 24455566665 445443333
No 130
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*
Probab=20.93 E-value=1.1e+02 Score=28.89 Aligned_cols=46 Identities=11% Similarity=0.171 Sum_probs=35.5
Q ss_pred cCCc--HHHHHHHHHHcCCCeEEEEEec-----CchhHHHHHHHHHhcCCccc
Q 017305 127 EAGG--NCNVAIAAARLGLDCVTIGHVG-----NEIYGRFLLDVLQDEGIGMV 172 (374)
Q Consensus 127 ~GG~--a~NvA~~larLG~~~~~v~~vG-----~D~~G~~i~~~L~~~GVd~~ 172 (374)
.||+ +.-+|..++++|.++.++..-. +....+.+.+.|++.||++.
T Consensus 191 iGgG~ig~E~A~~l~~~g~~Vtlv~~~~~l~~~d~~~~~~l~~~l~~~gv~~~ 243 (488)
T 3dgz_A 191 VGASYVALECAGFLTGIGLDTTVMMRSIPLRGFDQQMSSLVTEHMESHGTQFL 243 (488)
T ss_dssp ECCSHHHHHHHHHHHHTTCCEEEEESSCSSTTSCHHHHHHHHHHHHHTTCEEE
T ss_pred ECCCHHHHHHHHHHHHcCCceEEEEcCcccccCCHHHHHHHHHHHHHCCCEEE
Confidence 4665 6678999999999999987521 23467888999999999874
No 131
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=20.91 E-value=4.2e+02 Score=23.62 Aligned_cols=44 Identities=18% Similarity=0.201 Sum_probs=28.1
Q ss_pred HhhccCCcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeE-EEcCCCC
Q 017305 228 KTAIKHSKVLFCNGYGFDELSPALIISALEYAAQVGTSI-FFDPGPR 273 (374)
Q Consensus 228 ~~~l~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v-~~D~~~~ 273 (374)
...++...-|++.-- ...+.+...++++.+++.|..+ .+..+.+
T Consensus 105 ~~al~aGk~Vl~EKP--la~~~~e~~~l~~~a~~~g~~~~~v~~~~R 149 (357)
T 3ec7_A 105 VAALNANKYVFCEKP--LAVTAADCQRVIEAEQKNGKRMVQIGFMRR 149 (357)
T ss_dssp HHHHHTTCEEEEESS--SCSSHHHHHHHHHHHHHHTSCCEEEECGGG
T ss_pred HHHHHCCCCEEeecC--ccCCHHHHHHHHHHHHHhCCeEEEEeeccc
Confidence 344555556666521 2345677888999999999866 5665544
No 132
>3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis}
Probab=20.71 E-value=2.3e+02 Score=25.11 Aligned_cols=76 Identities=11% Similarity=0.068 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhccCcEEecCHHHHH------Hhh----------CC-
Q 017305 249 PALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLSTSDVLLLTSDEAE------SLT----------GL- 311 (374)
Q Consensus 249 ~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~~~Dil~~N~~Ea~------~l~----------g~- 311 (374)
.+.+..+.+.+++.|.+++-++-. + +.++.+..++|++++-..++. .+. |.
T Consensus 98 ~~GL~~L~~~~~e~GLpv~Tev~D---------~---~~v~~l~~~vd~lkIgA~~~~n~~LLr~va~~gkPVilK~Gms 165 (298)
T 3fs2_A 98 EKALEVFSDLKKEYGFPVLTDIHT---------E---EQCAAVAPVVDVLQIPAFLCRQTDLLIAAARTGRVVNVKKGQF 165 (298)
T ss_dssp HHHHHHHHHHHHHHCCCEEEECCS---------H---HHHHHHTTTCSEEEECGGGTTCHHHHHHHHHTTSEEEEECCTT
T ss_pred HHHHHHHHHHHHhcCCeEEEEeCC---------H---HHHHHHHhhCCEEEECccccCCHHHHHHHHccCCcEEEeCCCC
Confidence 356666777788899999887642 2 233445566999988764432 221 11
Q ss_pred ---CCHHHHHHHHHHcCCCccEEEEEcCC
Q 017305 312 ---RNPITAGQELLRKGLRTKWVVVKMGP 337 (374)
Q Consensus 312 ---~~~~~~~~~l~~~g~~~~~vvvT~G~ 337 (374)
++...+++.+.+.|-. +.+++-+|.
T Consensus 166 ~t~~ei~~ave~i~~~Gn~-~iiL~erg~ 193 (298)
T 3fs2_A 166 LAPWDMKNVLAKITESGNP-NVLATERGV 193 (298)
T ss_dssp CCGGGHHHHHHHHHTTTCC-CEEEEECCE
T ss_pred CCHHHHHHHHHHHHHcCCC-eEEEEECCC
Confidence 1346677777777642 455555554
No 133
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=20.44 E-value=70 Score=29.12 Aligned_cols=46 Identities=22% Similarity=0.303 Sum_probs=34.9
Q ss_pred cCCc--HHHHHHHHHHcCCCeEEEEEecC-----chhHHHHHHHHHhcCCccc
Q 017305 127 EAGG--NCNVAIAAARLGLDCVTIGHVGN-----EIYGRFLLDVLQDEGIGMV 172 (374)
Q Consensus 127 ~GG~--a~NvA~~larLG~~~~~v~~vG~-----D~~G~~i~~~L~~~GVd~~ 172 (374)
.||+ +.-+|..++++|.++.++..-.. ....+.+.+.|++.||++.
T Consensus 149 iGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~l~~~l~~~gV~i~ 201 (367)
T 1xhc_A 149 IGGGFIGLELAGNLAEAGYHVKLIHRGAMFLGLDEELSNMIKDMLEETGVKFF 201 (367)
T ss_dssp EECSHHHHHHHHHHHHTTCEEEEECSSSCCTTCCHHHHHHHHHHHHHTTEEEE
T ss_pred ECCCHHHHHHHHHHHhCCCEEEEEeCCCeeccCCHHHHHHHHHHHHHCCCEEE
Confidence 3555 67889999999999999865321 2367788899999998853
No 134
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=20.42 E-value=3.1e+02 Score=21.39 Aligned_cols=27 Identities=4% Similarity=-0.007 Sum_probs=16.4
Q ss_pred CHHHHHHHHHHcCCCccEEEEEcCCCce
Q 017305 313 NPITAGQELLRKGLRTKWVVVKMGPRGS 340 (374)
Q Consensus 313 ~~~~~~~~l~~~g~~~~~vvvT~G~~Ga 340 (374)
+.+++.+.+.+.- +..-+|+..|+.+.
T Consensus 124 d~~eai~~~~~~~-~~gDvVLv~Gsg~~ 150 (163)
T 3mvn_A 124 DVDELVMRIVQQA-KPNDHILIMSNGAF 150 (163)
T ss_dssp SHHHHHHHHHHHC-CTTCEEEEECSSCG
T ss_pred CHHHHHHHHHHhC-CCCCEEEEECCCCH
Confidence 5666666666542 11347778888763
No 135
>2wfb_A Putative uncharacterized protein ORP; mixed molybdenum-copper sulphide cluster, alpha and beta protein, biosynthetic protein; 2.00A {Desulfovibrio gigas}
Probab=20.41 E-value=40 Score=25.25 Aligned_cols=39 Identities=31% Similarity=0.440 Sum_probs=30.6
Q ss_pred CCcHHHHHHHHHHcCCCeEEEEEecCchhHHHHHHHHHhcCCcc
Q 017305 128 AGGNCNVAIAAARLGLDCVTIGHVGNEIYGRFLLDVLQDEGIGM 171 (374)
Q Consensus 128 GG~a~NvA~~larLG~~~~~v~~vG~D~~G~~i~~~L~~~GVd~ 171 (374)
+|.+...+..|+..|.++.+++.+|.. ..+.|++.||.+
T Consensus 53 ~g~g~~~~~~l~~~gv~~vi~~~iG~~-----a~~~L~~~GI~v 91 (120)
T 2wfb_A 53 HGAGINAAQVLAKSGAGVLLTGYVGPK-----AFQALQAAGIKV 91 (120)
T ss_dssp SCHHHHHHHHHHHHTEEEEECSCCCHH-----HHHHHHHTTCEE
T ss_pred CCchHHHHHHHHHCCCCEEEECCCCHh-----HHHHHHHCCCEE
Confidence 455667788888899999999988765 456788889975
No 136
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*
Probab=20.40 E-value=77 Score=31.62 Aligned_cols=20 Identities=30% Similarity=0.350 Sum_probs=17.6
Q ss_pred HHHHHHHHHHcCCCeEEEEE
Q 017305 131 NCNVAIAAARLGLDCVTIGH 150 (374)
Q Consensus 131 a~NvA~~larLG~~~~~v~~ 150 (374)
|+-+|.++++.|.+|.++..
T Consensus 39 Gl~AAlalAr~G~kVlLIEk 58 (637)
T 2zxi_A 39 GIEAALAAARMGAKTAMFVL 58 (637)
T ss_dssp HHHHHHHHHHTTCCEEEEES
T ss_pred HHHHHHHHHHCCCCEEEEEe
Confidence 67889999999999999975
No 137
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}
Probab=20.38 E-value=1.1e+02 Score=26.79 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=19.0
Q ss_pred CCc--HHHHHHHHHHcCCCeEEEEE
Q 017305 128 AGG--NCNVAIAAARLGLDCVTIGH 150 (374)
Q Consensus 128 GG~--a~NvA~~larLG~~~~~v~~ 150 (374)
||+ +..+|..|++.|.++.++-+
T Consensus 10 G~G~aGl~~A~~l~~~g~~v~vie~ 34 (357)
T 4a9w_A 10 GGGQSGLSAGYFLRRSGLSYVILDA 34 (357)
T ss_dssp CCSHHHHHHHHHHHHSSCCEEEECC
T ss_pred CcCHHHHHHHHHHHHCCCCEEEEEC
Confidence 444 67889999999999999874
No 138
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*
Probab=20.26 E-value=1.1e+02 Score=28.77 Aligned_cols=45 Identities=13% Similarity=0.245 Sum_probs=35.0
Q ss_pred cCCc--HHHHHHHHHHcCCCeEEEEEec------CchhHHHHHHHHHhcCCccc
Q 017305 127 EAGG--NCNVAIAAARLGLDCVTIGHVG------NEIYGRFLLDVLQDEGIGMV 172 (374)
Q Consensus 127 ~GG~--a~NvA~~larLG~~~~~v~~vG------~D~~G~~i~~~L~~~GVd~~ 172 (374)
.||+ +.=+|..++++|.++.++.. + +....+.+.+.|++.||++.
T Consensus 193 iGgG~~g~E~A~~l~~~g~~Vtlv~~-~~~l~~~d~~~~~~l~~~l~~~Gv~i~ 245 (483)
T 3dgh_A 193 VGAGYIGLECAGFLKGLGYEPTVMVR-SIVLRGFDQQMAELVAASMEERGIPFL 245 (483)
T ss_dssp ECCSHHHHHHHHHHHHTTCEEEEEES-SCSSTTSCHHHHHHHHHHHHHTTCCEE
T ss_pred ECCCHHHHHHHHHHHHcCCEEEEEeC-CCCCcccCHHHHHHHHHHHHhCCCEEE
Confidence 4655 56789999999999999965 2 23367788899999999864
No 139
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Probab=20.21 E-value=1.1e+02 Score=28.31 Aligned_cols=46 Identities=15% Similarity=0.264 Sum_probs=35.2
Q ss_pred cCCc--HHHHHHHHHHcCCCeEEEEEec-------CchhHHHHHHHHHhcCCccc
Q 017305 127 EAGG--NCNVAIAAARLGLDCVTIGHVG-------NEIYGRFLLDVLQDEGIGMV 172 (374)
Q Consensus 127 ~GG~--a~NvA~~larLG~~~~~v~~vG-------~D~~G~~i~~~L~~~GVd~~ 172 (374)
.||+ +.-+|..++++|.++.++..-. +....+.+.+.|++.||++.
T Consensus 151 iGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~ 205 (408)
T 2gqw_A 151 VGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLR 205 (408)
T ss_dssp ECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHHTTCEEE
T ss_pred ECCCHHHHHHHHHHHhCCCEEEEEEeCCcccccccCHHHHHHHHHHHHHcCcEEE
Confidence 4655 6788999999999999997532 12357788899999999753
No 140
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=20.17 E-value=2.6e+02 Score=24.74 Aligned_cols=39 Identities=10% Similarity=-0.026 Sum_probs=23.1
Q ss_pred CCcEEEEecCCC-CCCCHHHHHHHHHHHHhcCCeEEEcCCC
Q 017305 233 HSKVLFCNGYGF-DELSPALIISALEYAAQVGTSIFFDPGP 272 (374)
Q Consensus 233 ~~~~v~~~g~~~-~~~~~~~~~~~~~~a~~~g~~v~~D~~~ 272 (374)
+.++|+++.... ..... .+.++.+.|+++|+.+++|-..
T Consensus 148 ~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~De~~ 187 (393)
T 3kgw_A 148 KPVLLFLVHGESSTGVVQ-PLDGFGELCHRYQCLLLVDSVA 187 (393)
T ss_dssp CCSEEEEESEETTTTEEC-CCTTHHHHHHHTTCEEEEECTT
T ss_pred CCcEEEEeccCCcchhhc-cHHHHHHHHHHcCCEEEEECCc
Confidence 466776654311 11000 1456777888899999998653
No 141
>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*
Probab=20.16 E-value=4.1e+02 Score=22.74 Aligned_cols=96 Identities=13% Similarity=0.119 Sum_probs=52.8
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHHhcCCeEEEcCCCCCCCCCCCChHHHHHHHhhhc-cCcEEec-----CHHHHHH
Q 017305 234 SKVLFCNGYGFDELSPALIISALEYAAQVGTSIFFDPGPRGKSLSSGTPEEQRALSYFLS-TSDVLLL-----TSDEAES 307 (374)
Q Consensus 234 ~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~ll~-~~Dil~~-----N~~Ea~~ 307 (374)
+|++=+.- ....+...++++.+++.+++|+.---.... -+ ..++....+.+... .+||+++ |.++...
T Consensus 114 ~d~iDvEl----~~~~~~~~~l~~~a~~~~~kiI~S~Hdf~~-TP-~~~el~~~~~~~~~~gaDIvKia~~~~~~~D~l~ 187 (258)
T 4h3d_A 114 VDLIDVEL----FMGDEVIDEVVNFAHKKEVKVIISNHDFNK-TP-KKEEIVSRLCRMQELGADLPKIAVMPQNEKDVLV 187 (258)
T ss_dssp CSEEEEEG----GGCHHHHHHHHHHHHHTTCEEEEEEEESSC-CC-CHHHHHHHHHHHHHTTCSEEEEEECCSSHHHHHH
T ss_pred chhhHHhh----hccHHHHHHHHHHHHhCCCEEEEEEecCCC-CC-CHHHHHHHHHHHHHhCCCEEEEEEccCCHHHHHH
Confidence 67877762 345677888888889989888764321111 11 11233344444444 3799875 2333333
Q ss_pred hhCCCCHHHHHHHHHHcCCCccEEEEEcCCCceE
Q 017305 308 LTGLRNPITAGQELLRKGLRTKWVVVKMGPRGSI 341 (374)
Q Consensus 308 l~g~~~~~~~~~~l~~~g~~~~~vvvT~G~~Ga~ 341 (374)
|+ ++...+.+...+...+.+-+|+.|.+
T Consensus 188 Ll------~~~~~~~~~~~~~P~I~~~MG~~G~~ 215 (258)
T 4h3d_A 188 LL------EATNEMFKIYADRPIITMSMSGMGVI 215 (258)
T ss_dssp HH------HHHHHHHHHTCSSCBEEEECTGGGGG
T ss_pred HH------HHHHHHHHhcCCCCEEEEeCCCCChH
Confidence 32 23333333322225788999998853
No 142
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*
Probab=20.16 E-value=80 Score=29.65 Aligned_cols=46 Identities=9% Similarity=0.228 Sum_probs=35.3
Q ss_pred cCCc--HHHHHHHHHHcCCCeEEEEEec------CchhHHHHHHHHHhcCCccc
Q 017305 127 EAGG--NCNVAIAAARLGLDCVTIGHVG------NEIYGRFLLDVLQDEGIGMV 172 (374)
Q Consensus 127 ~GG~--a~NvA~~larLG~~~~~v~~vG------~D~~G~~i~~~L~~~GVd~~ 172 (374)
.||+ +.-+|..++++|.+++++..-. +....+.+.+.|++.||++.
T Consensus 177 iGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~ 230 (464)
T 2a8x_A 177 AGAGAIGMEFGYVLKNYGVDVTIVEFLPRALPNEDADVSKEIEKQFKKLGVTIL 230 (464)
T ss_dssp ECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEE
T ss_pred ECCcHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHHHHcCCEEE
Confidence 4665 6678899999999999987532 23467788899999999864
Done!