Query 017307
Match_columns 374
No_of_seqs 125 out of 199
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 07:25:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017307.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017307hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03175 hypothetical protein; 100.0 2E-122 4E-127 918.0 27.6 359 8-374 1-370 (415)
2 PLN02559 chalcone--flavonone i 100.0 4.5E-43 9.8E-48 328.6 13.3 160 201-373 2-163 (230)
3 PLN02804 chalcone isomerase 100.0 1.1E-40 2.3E-45 309.5 16.2 152 206-373 4-158 (206)
4 PLN03174 Chalcone-flavanone is 100.0 2.1E-40 4.6E-45 319.2 17.5 158 206-374 77-234 (278)
5 PLN02311 chalcone isomerase 100.0 7.6E-39 1.6E-43 307.5 18.2 168 191-373 55-222 (271)
6 PF02431 Chalcone: Chalcone-fl 100.0 1E-30 2.3E-35 237.9 11.3 148 216-374 1-151 (199)
7 COG0326 HtpG Molecular chapero 21.6 1.8E+02 0.0039 32.5 5.7 77 252-343 293-371 (623)
8 PF04014 Antitoxin-MazE: Antid 20.1 1.5E+02 0.0032 21.3 3.3 21 352-372 20-40 (47)
9 PF10126 Nit_Regul_Hom: Unchar 13.6 4.7E+02 0.01 23.1 5.3 20 310-330 73-92 (110)
10 TIGR01741 staph_tand_hypo cons 12.2 4.8E+02 0.01 24.3 5.2 35 339-374 81-115 (157)
No 1
>PLN03175 hypothetical protein; Provisional
Probab=100.00 E-value=2.1e-122 Score=917.97 Aligned_cols=359 Identities=59% Similarity=0.964 Sum_probs=351.3
Q ss_pred eccCCCCCccCCcchhhhccccCccccc-----------CcccccCCchhHhHHHHhHhhhhcceeeeeecCCCCccchh
Q 017307 8 MDFNGGDPYILPTEFFLARSLGDHLFSQ-----------SSYPYVPGSLALQGAFNCISKFTGAFLFWFTSGSSSNLSRR 76 (374)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~~~g~~~~~~a~~~~~k~a~a~~~~~~~~~~~~~~~~ 76 (374)
||+||+++|.||+|++||||||++||+| ||+||+|||+||||||+|++||||||||||||+|+||++||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 80 (415)
T PLN03175 1 SNLDHNSGYLFPIDSPLSHDLGLGLFSHVGTFVDNSLHQSRQICIPGSLAFQEAFSCISKFAGALLFWFSRASNPKLSRR 80 (415)
T ss_pred CCCCCCCccccCCCcccccccccchhhcccccccCcccccceeecCccHHHHHHHHHHHHhhhheEEEeccCCCHHHHHH
Confidence 7899999999999999999999999998 49999999999999999999999999999999999999999
Q ss_pred hcccCCCCccccccccccccccccccccccccccccCCCCccccchhhhhhhHHHHHHHHhhhcccccchhhhhhhhccC
Q 017307 77 IAGNQHGSKIGSYKSSAQVKQITSTGHNLTGFHLSSNSESEYACPVVFNKVSSSAIRRLFREGGKLHLSSVLSLAAAVIP 156 (374)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~la~a~~p 156 (374)
++++++ ++|++|++|++||++|||||+||||||.+|+||++|++|++|||+||||||||+||+|||||||||||+||
T Consensus 81 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~a~~p 157 (415)
T PLN03175 81 LSGGQG---SSSRASQSHIAQVKSCMQNLAGLPFGSQSKEEHAGQLLFAKISSFTIGRLWNEAERLHSCNVLSLAAALVP 157 (415)
T ss_pred HhcCCC---CCCchHHHhHHHhhhHhhcccccccccccccccchhhHHHHHHHHHHHHHHHHHHhhccccHHHHHhhhCC
Confidence 999999 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcceeeeeccCcccccccCCCCCCcccccccCCCCCCCCCCCCcceeecCCCcccCCeecccccCCCCCCCCcee
Q 017307 157 PLDNVSSKVLAVPLDNAEIQMHESMGRSPCEVESHRCGALSFPDLSRTRHAVEPRTGIEFPMILDNVIDGENYSSSTSEV 236 (374)
Q Consensus 157 p~~~~s~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~vVEPkTGI~FP~~Lt~~~~g~~~ss~~sL~ 236 (374)
|||||||||||||++|+|+++||++||+|||++|++|+++++|+++|++.+|||+|||+||+.++ ++++++++++
T Consensus 158 ~~~~~s~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vEPkTgv~FP~~l~-----~~p~s~~sl~ 232 (415)
T PLN03175 158 PLENISPKVLAMPLGNDDVQVSEPTDQRYCEVEHSGCSGLSFPDLNWTRDAVEPRTGIEFPMLLD-----ENNSSLTSEV 232 (415)
T ss_pred CccccChhheeeeccCCCcccccccCCCcccccCcCCCccCcCcccccccccccCCCCcCCcccc-----CCCCCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999995 4788888999
Q ss_pred EEeeeeeeeEEeeeeceEEEEEEEEeCcchhhhhhCCccCCCChhhhcccchhHHHHhcCCcceEEEEEEeecccchhhH
Q 017307 237 LVGTGSRTIKIVKIKSLKVYAFAFYVHPRSVCEKLGPKYASISVAELNKCGGFYEDLLREDIDMTVRLVINCNGMKVNAV 316 (374)
Q Consensus 237 LvGaGvR~k~I~gik~IKVYAiGvYld~~avk~~L~~KwkGksa~EL~~~~dFf~dLi~~~~ektIRLVi~ys~Vs~~~V 316 (374)
|+|+|+|+|+|+|+|+|||||||||+|+++++.+|++|||||+++||+++++||+||+++|++|+||+++++++++++.+
T Consensus 233 L~G~GvR~~eI~~~k~IKfyAiGVYle~~~v~~~L~~KwkGKsa~EL~~s~eFf~DIItap~~m~IRLVii~~gI~~sk~ 312 (415)
T PLN03175 233 LVGTGSRTMKIIRIKSLKVYAFGFYVHPNSVCEKLGPKYASVPASELKKCPDFYEDLLREDIVMTVRLVVNYNGLKINTV 312 (415)
T ss_pred eeecccceeEEEeeceeEEEEEEEEeccchHHHHHhhhhCCCcHHHHccCHHHHHHHHcCCccEEEEEEEecCCccHHHH
Confidence 99999999999988999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCccHHHHHHHhcccCCCcCCCCCCEEEEEEcCCCcEEEEeC
Q 017307 317 KDVFEKSLRARLEKANPNTDYHCLESFGSYFSKDIPLPLGTVINFRRTAAGQLITESE 374 (374)
Q Consensus 317 rdAFekSLg~RLkk~~~daE~eALekFks~Fkddi~fpkGssI~Ft~sP~G~L~~ei~ 374 (374)
++|||+++++||+++++++|+++|++|.++|+++++||||++|+|+|+|+|.|+|+|+
T Consensus 313 ~~Afees~g~RLkkt~gdae~eAIeKF~s~F~~di~fpkGssI~Ft~sP~ggLtisIn 370 (415)
T PLN03175 313 RDAFEKSLRNRLQKMNPNTDYNCLKTFGSFFTEDIPIPAGTKIDFRRTSDGQLITEIG 370 (415)
T ss_pred HHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcccccCCCCEEEEEEcCCCceEEEEC
Confidence 9999999999999999999999999999999779999999999999999999999885
No 2
>PLN02559 chalcone--flavonone isomerase
Probab=100.00 E-value=4.5e-43 Score=328.59 Aligned_cols=160 Identities=23% Similarity=0.340 Sum_probs=141.5
Q ss_pred CCCCcceeecCCCcccCCeecccccCCCCCCCCceeEEeeeeeeeEEeeeeceEEEEEEEEeCcchhhhhhCCccCCCCh
Q 017307 201 LSRTRHAVEPRTGIEFPMILDNVIDGENYSSSTSEVLVGTGSRTIKIVKIKSLKVYAFAFYVHPRSVCEKLGPKYASISV 280 (374)
Q Consensus 201 ~~~~~~vVEPkTGI~FP~~Lt~~~~g~~~ss~~sL~LvGaGvR~k~I~gik~IKVYAiGvYld~~avk~~L~~KwkGksa 280 (374)
++++.++|| ||+||+.+ ++|+++++++|+|+|+|+|+|+| ++|||||||||||++++.. |++|||||++
T Consensus 2 ~~~~~v~ve---~i~FP~~v------~~p~s~~~l~L~GaG~Rg~eI~~-~~vKftAiGvYle~~av~~-L~~KWKGKsa 70 (230)
T PLN02559 2 PAVTEVQVE---GVTFPPSV------KPPGSSNPLFLGGAGVRGLEIQG-KFIKFTAIGVYLEGNAVPS-LAKKWKGKTA 70 (230)
T ss_pred CccceEeEc---ceecCCcc------cCCCCCCceEEEeccccceEEee-EEEEEEEEEEEechhHHHH-HHHhhCCcCH
Confidence 467778899 99999999 57888899999999999999998 8999999999999998854 9999999999
Q ss_pred hhhcccchhHHHHhcCCcceEEEEEEeecccchhhHHHHHHHHHHHHHhh--cCCCccHHHHHHHhcccCCCcCCCCCCE
Q 017307 281 AELNKCGGFYEDLLREDIDMTVRLVINCNGMKVNAVKDVFEKSLRARLEK--ANPNTDYHCLESFGSYFSKDIPLPLGTV 358 (374)
Q Consensus 281 ~EL~~~~dFf~dLi~~~~ektIRLVi~ys~Vs~~~VrdAFekSLg~RLkk--~~~daE~eALekFks~Fkddi~fpkGss 358 (374)
+||.++.+||+||+++|+||++|++|+. .+++.++++++++.+.+|++. .|+|+|++||++|.++|+ +++||||++
T Consensus 71 ~EL~~~~~Ff~div~~p~EK~~rV~~I~-~l~G~qy~~kv~e~~~a~~ks~g~y~daE~~aLekF~~~Fk-~~~fp~Gs~ 148 (230)
T PLN02559 71 EELADSVAFFRDVVTGDFEKFTRVTMIL-PLTGEQYSEKVTENCVAIWKSLGIYTDAEAKAVEKFKEAFK-EETFPPGSS 148 (230)
T ss_pred HHHhcCHHHHHHHHcCcchhhEEEEEEE-eccccchHHHHhHHHHHHHHhcCCcchhHHHHHHHHHHHhc-CCCCCCCCE
Confidence 9999999999999999999999999974 455555555555555555544 467899999999999999 689999999
Q ss_pred EEEEEcCCCcEEEEe
Q 017307 359 INFRRTAAGQLITES 373 (374)
Q Consensus 359 I~Ft~sP~G~L~~ei 373 (374)
|+|||+|+|+|+|++
T Consensus 149 I~ft~sp~g~L~isf 163 (230)
T PLN02559 149 ILFTHSPTGSLTVAF 163 (230)
T ss_pred EEEEECCCCcEEEEE
Confidence 999999999999976
No 3
>PLN02804 chalcone isomerase
Probab=100.00 E-value=1.1e-40 Score=309.54 Aligned_cols=152 Identities=24% Similarity=0.361 Sum_probs=139.5
Q ss_pred ceeecCCCcccCCeecccccCCCCCCCCceeEEeeeeeeeEEeeeeceEEEEEEEEeCcchhhhhhCCccCCCChhhhcc
Q 017307 206 HAVEPRTGIEFPMILDNVIDGENYSSSTSEVLVGTGSRTIKIVKIKSLKVYAFAFYVHPRSVCEKLGPKYASISVAELNK 285 (374)
Q Consensus 206 ~vVEPkTGI~FP~~Lt~~~~g~~~ss~~sL~LvGaGvR~k~I~gik~IKVYAiGvYld~~avk~~L~~KwkGksa~EL~~ 285 (374)
++|| |++||+.++ +++++++|+|+|+|+|+|+| ++|||||||||+|++ ++.+| .||+||+++||++
T Consensus 4 ~~v~---~v~FP~~i~--------~ss~~l~L~G~G~R~~~I~~-~~iK~yAiGvYle~~-~~~~L-~kwkgk~a~EL~~ 69 (206)
T PLN02804 4 VMVE---DIPFPPQIT--------TSSKPLSLLGHGITDIEIHF-LQIKFTAIGVYLEPS-VKGHL-QSWKGKPGSELAE 69 (206)
T ss_pred EEec---CcCCCceee--------cCCCcceEEeecccceEEEe-EEEEEEEEEEEecHH-HHHHH-HHhcCCCHHHHhc
Confidence 5688 999999993 34578999999999999999 599999999999995 66668 5999999999999
Q ss_pred cchhHHHHhcCCcceEEEEEEeecccchhhHHHHHHHHHHHHHhhcC--CCccHHHHHHHhcccCCCcCCCCCCEEEEEE
Q 017307 286 CGGFYEDLLREDIDMTVRLVINCNGMKVNAVKDVFEKSLRARLEKAN--PNTDYHCLESFGSYFSKDIPLPLGTVINFRR 363 (374)
Q Consensus 286 ~~dFf~dLi~~~~ektIRLVi~ys~Vs~~~VrdAFekSLg~RLkk~~--~daE~eALekFks~Fkddi~fpkGssI~Ft~ 363 (374)
+.+||+||+++|+||++||+|++ .+++.++++++++++++||++.+ +++|++||++|.++|+ +++||||++|+|+|
T Consensus 70 ~~~Ff~dlv~~p~ek~~Ri~~i~-~l~g~qy~~~~ee~~~~rlk~~~~y~d~e~~aL~kf~~~Fk-~~~fp~Gs~I~ft~ 147 (206)
T PLN02804 70 DDDFFQALIQAPVEKLIRIVVIK-EIKGSQYGVQLESSVRDRLAEDDKYEEEEEEALEKVVEFFQ-SKYFKKNSIITYHF 147 (206)
T ss_pred CHHHHHHHHcCChhhEEEEEEEe-cCcCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhC-CCcCCCCCEEEEEe
Confidence 99999999999999999999996 78999999999999999999986 6688999999999998 77999999999999
Q ss_pred cC-CCcEEEEe
Q 017307 364 TA-AGQLITES 373 (374)
Q Consensus 364 sP-~G~L~~ei 373 (374)
+| +|.|+|.+
T Consensus 148 ~~~~g~l~Isf 158 (206)
T PLN02804 148 PATSGIVEISF 158 (206)
T ss_pred cCCCCeEEEEE
Confidence 98 89998754
No 4
>PLN03174 Chalcone-flavanone isomerase-related; Provisional
Probab=100.00 E-value=2.1e-40 Score=319.16 Aligned_cols=158 Identities=35% Similarity=0.593 Sum_probs=148.1
Q ss_pred ceeecCCCcccCCeecccccCCCCCCCCceeEEeeeeeeeEEeeeeceEEEEEEEEeCcchhhhhhCCccCCCChhhhcc
Q 017307 206 HAVEPRTGIEFPMILDNVIDGENYSSSTSEVLVGTGSRTIKIVKIKSLKVYAFAFYVHPRSVCEKLGPKYASISVAELNK 285 (374)
Q Consensus 206 ~vVEPkTGI~FP~~Lt~~~~g~~~ss~~sL~LvGaGvR~k~I~gik~IKVYAiGvYld~~avk~~L~~KwkGksa~EL~~ 285 (374)
.+|||+|||+||++++ . ...|+|+|+|+|+|+|+|+|||||+|||+|+++++++|++||+|++++||.+
T Consensus 77 ~~vEp~tGv~FP~~l~------~-----~~~LLGaGvR~k~i~glk~IKvYAiGlYl~~~~v~~~L~~k~kgks~~El~~ 145 (278)
T PLN03174 77 SVVESKTGVSFPAEIG------D-----SRRLLGVGLRKKSILGLKNIDVYAFGVYADDDDLKKLLGEKYGKLSASELKG 145 (278)
T ss_pred ceeccCCCCcCCCccc------C-----CCcceeeeeeeEEEeccceEEEEEEEEEechhHhHHHhhhhhcCCChhhhhc
Confidence 4799999999999994 2 1236799999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHhcCCcceEEEEEEeecccchhhHHHHHHHHHHHHHhhcCCCccHHHHHHHhcccCCCcCCCCCCEEEEEEcC
Q 017307 286 CGGFYEDLLREDIDMTVRLVINCNGMKVNAVKDVFEKSLRARLEKANPNTDYHCLESFGSYFSKDIPLPLGTVINFRRTA 365 (374)
Q Consensus 286 ~~dFf~dLi~~~~ektIRLVi~ys~Vs~~~VrdAFekSLg~RLkk~~~daE~eALekFks~Fkddi~fpkGssI~Ft~sP 365 (374)
+.+||+||+++|++|++||+|+|++++.+.+++||++++++||+++.+++++++|++|.++|++++++|||++|+|+|+|
T Consensus 146 s~~f~~dil~~~~ek~iRL~iiy~~v~~~~v~~A~~esv~~rl~~~~~~e~~e~IekF~~~F~~~~~l~kGdvI~~~~~P 225 (278)
T PLN03174 146 NKEFIDDLMEADIKMTVRLQIVYGKLSIRSVRSAFEESVGSRLQKFGGSDNKELLQSFTSLFKDEYKIPKGSVIDLSREP 225 (278)
T ss_pred CHHHHHHHHcCCCceEEEEEEEeccccHHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHhccccCCCCCEEEEEEcC
Confidence 99999999999999999999999999999999999999999999988877788999999999988889999999999999
Q ss_pred CCcEEEEeC
Q 017307 366 AGQLITESE 374 (374)
Q Consensus 366 ~G~L~~ei~ 374 (374)
++.|++.++
T Consensus 226 g~gl~vsi~ 234 (278)
T PLN03174 226 GHVLRTTID 234 (278)
T ss_pred CCeEEEEEC
Confidence 999999875
No 5
>PLN02311 chalcone isomerase
Probab=100.00 E-value=7.6e-39 Score=307.47 Aligned_cols=168 Identities=21% Similarity=0.345 Sum_probs=154.2
Q ss_pred ccCCCCCCCCCCCCcceeecCCCcccCCeecccccCCCCCCCCceeEEeeeeeeeEEeeeeceEEEEEEEEeCcchhhhh
Q 017307 191 HRCGALSFPDLSRTRHAVEPRTGIEFPMILDNVIDGENYSSSTSEVLVGTGSRTIKIVKIKSLKVYAFAFYVHPRSVCEK 270 (374)
Q Consensus 191 ~~~~~~~~p~~~~~~~vVEPkTGI~FP~~Lt~~~~g~~~ss~~sL~LvGaGvR~k~I~gik~IKVYAiGvYld~~avk~~ 270 (374)
..|+++++|... .++||+|||+||+.++ .++++++|+|+|+|+|+|.|++ ++|||||+|+|+++++++.
T Consensus 55 ~~~~~~~~~~~~---~~~ep~TgV~Fp~~v~------~~~~s~~L~LnGaGvR~K~I~~-~~vKVYA~GLYL~~~~~~~- 123 (271)
T PLN02311 55 VKSAAFSVGSAE---YAEETATSVKFQRSLT------LPGCSSPLSLLGTGYREKVFAI-IGVKVYAAGLYVNPSILSG- 123 (271)
T ss_pred eeccccccCccc---ceecCCcCCcCCcccc------CCCCCCceeEeeeEEeeEEEee-eeEEEEEEEEEechhhhhh-
Confidence 468999999887 8899999999999994 5666789999999999999986 7999999999999997755
Q ss_pred hCCccCCCChhhhcccchhHHHHhcCCcceEEEEEEeecccchhhHHHHHHHHHHHHHhhcCCCccHHHHHHHhcccCCC
Q 017307 271 LGPKYASISVAELNKCGGFYEDLLREDIDMTVRLVINCNGMKVNAVKDVFEKSLRARLEKANPNTDYHCLESFGSYFSKD 350 (374)
Q Consensus 271 L~~KwkGksa~EL~~~~dFf~dLi~~~~ektIRLVi~ys~Vs~~~VrdAFekSLg~RLkk~~~daE~eALekFks~Fkdd 350 (374)
|+ ||+|++++||.++.+||+||+++|++|++||++. ++|+..++++||++++++|+++. +++|+++|++|+++|+ +
T Consensus 124 L~-kwkgk~a~eL~~~~~ff~dIi~a~~eK~irI~~i-R~v~g~~~~~A~~eg~~~rlk~~-~~~~~~aLekF~~~F~-~ 199 (271)
T PLN02311 124 LS-AWKGRSADEIQRDSSLFSSIFQAPAEKSLQIVLV-RDVDGKTFWDALDEAISPRIKAP-SPDDTSALSTFRSIFQ-N 199 (271)
T ss_pred Hh-hhcCCCHHHHhcchHHHHHHhcCCcceEEEEEEE-ecCCHHHHHHHHHHHHHHHHhcc-ccchHHHHHHHHHHhc-C
Confidence 88 9999999999999999999999999999999996 47999999999999999999654 6688899999999999 6
Q ss_pred cCCCCCCEEEEEEcCCCcEEEEe
Q 017307 351 IPLPLGTVINFRRTAAGQLITES 373 (374)
Q Consensus 351 i~fpkGssI~Ft~sP~G~L~~ei 373 (374)
++||||++|+|+|.|+|.+++.+
T Consensus 200 ~~l~kGd~I~~~~~p~~~~~v~~ 222 (271)
T PLN02311 200 RSLNKGTVIFLTWINPSKMLVCI 222 (271)
T ss_pred CCCCCCCEEEEEEeCCCceEEEE
Confidence 79999999999999998888875
No 6
>PF02431 Chalcone: Chalcone-flavanone isomerase; InterPro: IPR003466 Chalcone isomerase (5.5.1.6 from EC) also known as chalcone-flavanone isomerase, is a plant enzyme responsible for the isomerisation of chalcone to naringenin a key step in the biosynthesis of flavonoids. The Petunia hybrida (Petunia) genome contains two genes coding for very similar enzymes, ChiA and ChiB, but only the first seems to encode a functional chalcone isomerase. Chalcone isomerase has a core 2-layer alpha/beta structure consisting of beta(3)-alpha(2)-beta-alpha(2)-beta(3) []. This entry represents a subgroup of Chalcone isomerase.; GO: 0016872 intramolecular lyase activity, 0042398 cellular modified amino acid biosynthetic process; PDB: 1JX0_B 1JEP_A 1EYP_B 1JX1_B 1EYQ_B 1FM8_A 1FM7_A 4DOL_A 4DOI_A 4DOK_B ....
Probab=99.97 E-value=1e-30 Score=237.92 Aligned_cols=148 Identities=30% Similarity=0.499 Sum_probs=128.2
Q ss_pred cCCeecccccCCCCCCCCceeEEeeeeeeeEEeeeeceEEEEEEEEeCcchhhhhhCCccCCCChh-hhcccchhHHHHh
Q 017307 216 FPMILDNVIDGENYSSSTSEVLVGTGSRTIKIVKIKSLKVYAFAFYVHPRSVCEKLGPKYASISVA-ELNKCGGFYEDLL 294 (374)
Q Consensus 216 FP~~Lt~~~~g~~~ss~~sL~LvGaGvR~k~I~gik~IKVYAiGvYld~~avk~~L~~KwkGksa~-EL~~~~dFf~dLi 294 (374)
||.+++ .|.+.++++|+|+|+|+++|+ +|||||+|+|+++++++. +..+|.++.++ ++.++.+||++|+
T Consensus 1 FP~~i~------~p~~~~~l~L~G~GvR~~~~~---~ikVYavG~Yv~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ll 70 (199)
T PF02431_consen 1 FPKKIT------SPTSSEELSLLGAGVRTVSFL---NIKVYAVGLYVDDSDAKK-LLKKWKGKSASDDLEKSEDFFDDLL 70 (199)
T ss_dssp EESEEE-------TTTSSEEEEEEEEEEEEEET---EEEEEEEEEEEECCHHHH-HHHHHTTT-HHHHHHT-HHHHHHHH
T ss_pred CCCccc------CCCCCCCeEEEEEEEeeEEEE---EEEEEEEEEEEChhHhhh-HHHhhhcccCcccccccHHHHHHHh
Confidence 899994 566678999999999999996 689999999999999888 55589999887 9999999999999
Q ss_pred cCCcceEEEEEEeecccchhhHHHHHHHHHHHHHhhcC--CCccHHHHHHHhcccCCCcCCCCCCEEEEEEcCCCcEEEE
Q 017307 295 REDIDMTVRLVINCNGMKVNAVKDVFEKSLRARLEKAN--PNTDYHCLESFGSYFSKDIPLPLGTVINFRRTAAGQLITE 372 (374)
Q Consensus 295 ~~~~ektIRLVi~ys~Vs~~~VrdAFekSLg~RLkk~~--~daE~eALekFks~Fkddi~fpkGssI~Ft~sP~G~L~~e 372 (374)
+++++|++||+++|+ ++.++++|||.+++.+|+++.+ .++++++|++|+++|+...++|||++|+|+|+|+|.|++.
T Consensus 71 ~~~~~k~iri~~~R~-~~~~~l~d~~~~~i~~r~~~~~~~~~~~~~~l~~f~~~F~~~g~~~kG~~i~l~~~~~g~l~v~ 149 (199)
T PF02431_consen 71 DSPVEKAIRIVPVRN-VDGKHLRDAFIESIRPRLKAAGTEEEALEEALDEFKSLFKSKGSVPKGDVITLTWSPDGSLTVS 149 (199)
T ss_dssp HSSS-EEEEEEESSS-EEHHHHHHHHHHHHHHHHHHTT--SHHHHHHHHHHHHHHTTB-EE-TT-EEEEEEETTTEEEEE
T ss_pred cCCccEEEEEEEEec-CCHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHhcccccccCCCEEEEEECCCCcEEEE
Confidence 999999999999975 9999999999999999999885 3577889999999998455999999999999999999988
Q ss_pred eC
Q 017307 373 SE 374 (374)
Q Consensus 373 i~ 374 (374)
++
T Consensus 150 ~~ 151 (199)
T PF02431_consen 150 YN 151 (199)
T ss_dssp EE
T ss_pred Ee
Confidence 73
No 7
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=21.58 E-value=1.8e+02 Score=32.47 Aligned_cols=77 Identities=22% Similarity=0.396 Sum_probs=41.0
Q ss_pred ceEEEEEEEEeCcchhhhhhCCccCCCChhhhcccchhHHHHhc-CCcceEEEEE-EeecccchhhHHHHHHHHHHHHHh
Q 017307 252 SLKVYAFAFYVHPRSVCEKLGPKYASISVAELNKCGGFYEDLLR-EDIDMTVRLV-INCNGMKVNAVKDVFEKSLRARLE 329 (374)
Q Consensus 252 ~IKVYAiGvYld~~avk~~L~~KwkGksa~EL~~~~dFf~dLi~-~~~ektIRLV-i~ys~Vs~~~VrdAFekSLg~RLk 329 (374)
++|+|.=+||+.+++ .. |-|-|.. |.+=+|+ .|....+--. ++ ..--.+.+++++.+.+..+|.
T Consensus 293 glkLYv~rVfI~Dd~-~~-llP~yl~-----------Fv~GvIDS~DLpLNvSRE~LQ-~n~~l~~Irk~l~kkvl~~L~ 358 (623)
T COG0326 293 GLKLYVNRVFIMDDA-ED-LLPNYLR-----------FVRGVIDSEDLPLNVSREILQ-QNRILAAIRKALTKKVLSMLE 358 (623)
T ss_pred CcEEEEeeeEEeCCh-hh-hhhHHHh-----------hheeeeecCCCCcccCHHHHc-cCHHHHHHHHHHHHHHHHHHH
Confidence 689999999999975 33 5554542 1122222 1111111000 01 011256688888888888888
Q ss_pred hcCCCccHHHHHHH
Q 017307 330 KANPNTDYHCLESF 343 (374)
Q Consensus 330 k~~~daE~eALekF 343 (374)
++..+ |.|+-.+|
T Consensus 359 ~La~~-~~e~y~~f 371 (623)
T COG0326 359 KLAKD-DPEKYRKF 371 (623)
T ss_pred HHHhc-CHHHHHHH
Confidence 88653 33333333
No 8
>PF04014 Antitoxin-MazE: Antidote-toxin recognition MazE; InterPro: IPR007159 This domain is found in AbrB from Bacillus subtilis. The product of the abrB gene is an ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation []. AbrB is thought to interact directly with the transcription initiation regions of genes under its control []. AbrB contains a helix-turn-helix structure, but this domain ends before the helix-turn-helix begins []. The product of the B. subtilis gene spoVT is another member of this family and is also a transcriptional regulator []. DNA-binding activity in this AbrB homologue requires hexamerisation []. Another family member has been isolated from the Sulfolobus solfataricus and has been identified as a homologue of bacterial repressor-like proteins. The Escherichia coli family member SohA or Prl1F appears to be bifunctional and is able to regulate its own expression as well as relieve the export block imposed by high-level synthesis of beta-galactosidase hybrid proteins [].; PDB: 2L66_A 2GLW_A 3TND_D 2W1T_B 2RO5_B 2FY9_A 2RO3_B 1UB4_C 3ZVK_G 1YFB_B ....
Probab=20.11 E-value=1.5e+02 Score=21.28 Aligned_cols=21 Identities=14% Similarity=0.343 Sum_probs=17.8
Q ss_pred CCCCCCEEEEEEcCCCcEEEE
Q 017307 352 PLPLGTVINFRRTAAGQLITE 372 (374)
Q Consensus 352 ~fpkGssI~Ft~sP~G~L~~e 372 (374)
.+.+|+.|++....+|.|+++
T Consensus 20 ~l~~Gd~v~i~~~~~g~i~i~ 40 (47)
T PF04014_consen 20 GLKPGDEVEIEVEGDGKIVIR 40 (47)
T ss_dssp TSSTTTEEEEEEETTSEEEEE
T ss_pred CCCCCCEEEEEEeCCCEEEEE
Confidence 467899999999999877765
No 9
>PF10126 Nit_Regul_Hom: Uncharacterized protein, homolog of nitrogen regulatory protein PII; InterPro: IPR019296 This family consists of various hypothetical archaeal proteins. It includes a putative nitrogen regulatory protein PII homolog.
Probab=13.63 E-value=4.7e+02 Score=23.13 Aligned_cols=20 Identities=20% Similarity=0.363 Sum_probs=12.8
Q ss_pred ccchhhHHHHHHHHHHHHHhh
Q 017307 310 GMKVNAVKDVFEKSLRARLEK 330 (374)
Q Consensus 310 ~Vs~~~VrdAFekSLg~RLkk 330 (374)
-|+.+++ +.+++.+..||+.
T Consensus 73 VV~~~~~-~~i~~~i~ekL~~ 92 (110)
T PF10126_consen 73 VVDEEKV-EKIEKLIKEKLKN 92 (110)
T ss_pred EECHHHH-HHHHHHHHHHhcC
Confidence 3566665 5677777777653
No 10
>TIGR01741 staph_tand_hypo conserved hypothetical protein. This model represents a tandem array of 10 proteins in Staphylococcus aureus and the C-terminal region of one protein each in Bacillus subtilis and Bacillus halodurans.
Probab=12.15 E-value=4.8e+02 Score=24.28 Aligned_cols=35 Identities=23% Similarity=0.226 Sum_probs=30.9
Q ss_pred HHHHHhcccCCCcCCCCCCEEEEEEcCCCcEEEEeC
Q 017307 339 CLESFGSYFSKDIPLPLGTVINFRRTAAGQLITESE 374 (374)
Q Consensus 339 ALekFks~Fkddi~fpkGssI~Ft~sP~G~L~~ei~ 374 (374)
..+++++.|+ +....+=++.+|+.+.+|+|.|..|
T Consensus 81 lf~~Lr~~Fk-~n~qe~Wts~t~~~~~~Gkfnv~fd 115 (157)
T TIGR01741 81 LFEELREEFR-NENLEPWTSCEFDFTRSGELKVSFD 115 (157)
T ss_pred HHHHHHHHHH-HcCCCCcEEEEEEEecCCcEEEEec
Confidence 7789999999 6567899999999999999999865
Done!