BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017308
         (373 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1ZY7|A Chain A, Crystal Structure Of The Catalytic Domain Of An Adenosine
           Deaminase That Acts On Rna (hadar2) Bound To Inositol
           Hexakisphosphate (ihp)
 pdb|1ZY7|B Chain B, Crystal Structure Of The Catalytic Domain Of An Adenosine
           Deaminase That Acts On Rna (hadar2) Bound To Inositol
           Hexakisphosphate (ihp)
          Length = 403

 Score =  145 bits (367), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 116/352 (32%), Positives = 174/352 (49%), Gaps = 55/352 (15%)

Query: 4   ECWGDEVSKKVLWQYKSLPKK-GKPQGREVTVLAAFLISSPS--KDLEVVALGTGTKCIG 60
           +   D VS+ VL ++  L      P  R   VLA  ++++ +  KD +V+++ TGTKCI 
Sbjct: 23  QVLADAVSRLVLGKFGDLTDNFSSPHARR-KVLAGVVMTTGTDVKDAKVISVSTGTKCIN 81

Query: 61  RSLLSPHGDIVNDSHAEIVARRALLRFFYTEV---LNKQKCSNGIEGLRDDVFNNFLFEL 117
              +S  G  +ND HAEI++RR+LLRF YT++   LN +           D     +F+ 
Sbjct: 82  GEYMSDRGLALNDCHAEIISRRSLLRFLYTQLELYLNNK-----------DDQKRSIFQK 130

Query: 118 GPTGKYRFREGWQLHLYISQLPCGDASLSSCHS------APRNFFSREGNSLSSVDELNG 171
              G +R +E  Q HLYIS  PCGDA + S H       A R+   +    L +  E   
Sbjct: 131 SERGGFRLKENVQFHLYISTSPCGDARIFSPHEPILEEPADRHPNRKARGQLRTKIESG- 189

Query: 172 FKDGIYDSLQHIGRVQRKPG--RGDTTLSVSCSDKIARWNAVGVQGALLSYFLQPVYLSS 229
             +G    ++    +Q   G  +G+  L++SCSDKIARWN VG+QG+LLS F++P+Y SS
Sbjct: 190 --EGTI-PVRSNASIQTWDGVLQGERLLTMSCSDKIARWNVVGIQGSLLSIFVEPIYFSS 246

Query: 230 ITVGRSPNTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKPIFLAASVPPEEFQHSET 289
           I +G            +HL R++Y RI  + E+L   + +NKP+    S       ++E 
Sbjct: 247 IILG-------SLYHGDHLSRAMYQRISNI-EDLPPLYTLNKPLLSGIS-------NAEA 291

Query: 290 ASSTLTCGYSICWN-KSGLHEVILGTTGRKQGTSAKGALSPSTQSSLCKNRL 340
                   +S+ W       EVI  TTG+ +   A         S LCK+ L
Sbjct: 292 RQPGKAPNFSVNWTVGDSAIEVINATTGKDELGRA---------SRLCKHAL 334


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.135    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,170,158
Number of Sequences: 62578
Number of extensions: 464254
Number of successful extensions: 897
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 893
Number of HSP's gapped (non-prelim): 4
length of query: 373
length of database: 14,973,337
effective HSP length: 100
effective length of query: 273
effective length of database: 8,715,537
effective search space: 2379341601
effective search space used: 2379341601
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)