Query 017308
Match_columns 373
No_of_seqs 129 out of 426
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 07:25:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017308.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017308hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00552 ADEAMc tRNA-specifi 100.0 1.3E-89 2.8E-94 683.8 29.7 328 5-369 1-341 (374)
2 KOG2777 tRNA-specific adenosin 100.0 1.4E-81 3E-86 637.8 23.9 323 5-368 173-506 (542)
3 PF02137 A_deamin: Adenosine-d 100.0 8.4E-79 1.8E-83 602.6 13.9 304 51-370 1-318 (343)
4 COG0590 CumB Cytosine/adenosin 77.0 15 0.00033 32.5 8.3 33 46-87 38-70 (152)
5 TIGR02571 ComEB ComE operon pr 48.1 64 0.0014 28.5 6.6 13 131-143 88-100 (151)
6 PRK10860 tRNA-specific adenosi 38.7 30 0.00064 31.3 3.0 15 131-145 83-97 (172)
7 cd01285 nucleoside_deaminase N 35.6 41 0.0009 27.6 3.2 16 131-146 68-83 (109)
8 PF15134 DUF4570: Domain of un 29.5 31 0.00068 29.0 1.4 23 70-95 10-32 (109)
9 cd01283 cytidine_deaminase Cyt 27.2 57 0.0012 26.8 2.7 18 130-147 65-87 (112)
10 PF14737 DUF4470: Domain of un 22.8 63 0.0014 26.2 2.1 21 69-89 56-76 (100)
No 1
>smart00552 ADEAMc tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase).
Probab=100.00 E-value=1.3e-89 Score=683.75 Aligned_cols=328 Identities=43% Similarity=0.674 Sum_probs=264.3
Q ss_pred chHHHHHHHHHHHHhcCCCCCCCCCCCcceEEEEEEeeCC-CCeEEEEEecCCCcccCCcCCCCCCcccchHHHHHHHHH
Q 017308 5 CWGDEVSKKVLWQYKSLPKKGKPQGREVTVLAAFLISSPS-KDLEVVALGTGTKCIGRSLLSPHGDIVNDSHAEIVARRA 83 (373)
Q Consensus 5 ~~ad~ia~~v~~~y~~L~~~gkp~~~ewtvlA~iVl~~~~-~~~~vVslgTGtKc~~~~~l~~~G~~lhD~HAEVLARR~ 83 (373)
.|||+||++|+++|++||++|||..+||||||||||+.+. ++++||||||||||+|+++++.+|++|||||||||||||
T Consensus 1 ~~~d~Ia~~v~~~y~~L~k~~kp~~~e~tvLA~iV~~~~~~~~~~vvslgTGtKc~~~~~~~~~G~~lhD~HAEVlArR~ 80 (374)
T smart00552 1 DTGDEISQLVLEKFGSLPKIGKPGLREWTILAGVVMTNGMDNEKQVVSLGTGTKCISGEKLSPNGLVLNDCHAEILARRG 80 (374)
T ss_pred CHHHHHHHHHHHHHHhhhhcCCCCCCCceeEEEEEEEecCCCceEEEEEecCccccchhhhccCCCEEEeCCHHHHHHHH
Confidence 3799999999999999999999999999999999999874 379999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccCCCCcccccCCCcCeeeeeCCCC-ceEeeCCcEEEEEeccCCCCccccccccCCCCCCCCc----
Q 017308 84 LLRFFYTEVLNKQKCSNGIEGLRDDVFNNFLFELGPTG-KYRFREGWQLHLYISQLPCGDASLSSCHSAPRNFFSR---- 158 (373)
Q Consensus 84 f~r~Ly~el~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~Lk~~v~lhlYiS~~PCGDAsi~~~~~~~~~~~~~---- 158 (373)
|+||||+||+.+.+. . ...||+..+++ +|+||+||+||||||++|||||||+.+.....+....
T Consensus 81 f~r~l~~el~~~~~~----------~-~~sif~~~~~~~~~~Lk~~v~lhlYiS~~PCGdAs~~~~~~~~~~~~~~~~~~ 149 (374)
T smart00552 81 FLRFLYSELQLFNSS----------S-EDSIFEKNKEGGKYKLKSNVLFHLYISTLPCGDASIFSPLEPLKNDDSKHPVR 149 (374)
T ss_pred HHHHHHHHHHHHhcc----------C-CCceEEECCCCCceEeCCCcEEEEEeccCCccccccccccccccccccccccc
Confidence 999999999987532 1 34578876544 9999999999999999999999999776433221000
Q ss_pred ----CCCCCCccccCCCccccccccccccceeecCCCCC--CcceeechhhHHHHHHHhhhhhhhhhcccccceeceEEe
Q 017308 159 ----EGNSLSSVDELNGFKDGIYDSLQHIGRVQRKPGRG--DTTLSVSCSDKIARWNAVGVQGALLSYFLQPVYLSSITV 232 (373)
Q Consensus 159 ----~~~~~~~~~~~~g~~~~~~~~~~~~g~vrtKPgrg--d~t~smSCSDKl~rWnvlGlQGaLLS~~~ePiylssivi 232 (373)
.+........++|+. +++..|+|||||||+ ++|+||||||||+||||||||||||||||+||||++|||
T Consensus 150 ~~~~~~~~~~~~~~~~g~~-----~~~~~~~vrtkpgr~~~~~t~smSCSDKlarwnvlGlQGaLls~~i~PiYlssivv 224 (374)
T smart00552 150 KNIKRSKLRTKIEIGEGTV-----PVRSSDIVQTWDGIGDGERLLSMSCSDKIARWNVLGVQGALLSHFIEPIYLSSIVL 224 (374)
T ss_pred cccccccccccccccCCcc-----cccccCccccCCCCCCCCcccccchhHHHHHHHHhhcchHHHHHHhhhhhheeEEe
Confidence 011111122333432 366789999999999 569999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchHHHHhhhhhcccccccccCCCCceeccceEEeccCCCcccccCccccCCCCCcccEEeeCCCC-ceeE
Q 017308 233 GRSPNTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKPIFLAASVPPEEFQHSETASSTLTCGYSICWNKSGL-HEVI 311 (373)
Q Consensus 233 g~~~~~~~~~~~~~~l~RAl~~Rl~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~si~W~~~~~-~Evi 311 (373)
|.... .+++|+|||++|+.++ ..+|.+|.+++|++...+ ..+|. . ...+.+ ..|++|+.++. .|++
T Consensus 225 g~~~~------~~~~l~Ra~~~R~~~~-~~l~~~~~~~~p~~~~~~--~~~~~-~--~~~~s~-~~Sl~W~~~~~~~ev~ 291 (374)
T smart00552 225 GKSLY------SAEHLERALYGRLDPL-DGLPTPFRVNRPLISLVS--VADFQ-R--QTAKSP-NFSVNWSQGDESLEIL 291 (374)
T ss_pred cCccC------CHHHHHHHHHhhhccc-ccCCCccccccceeeccC--ccccc-c--cCCCCC-CCeEEEEeCCCcEEEE
Confidence 96432 2479999999999877 578999999999986533 33451 1 111222 34899997765 8999
Q ss_pred ECCCCccCCcCCCCCCCCCCccHHHHHHHHHHHHHhhhhhhhcccCCCCcHHHHHhhc
Q 017308 312 LGTTGRKQGTSAKGALSPSTQSSLCKNRLLQVFLSLKHESKIRCLAADISYRELKVVL 369 (373)
Q Consensus 312 ~~~~G~k~g~~~K~~~~~~~~S~lcK~~l~~~f~~l~~~~~~~~~~~~~tY~e~K~~a 369 (373)
+|.+|++++ .++++|+|||++||++|.+|......... ...||.|+|..|
T Consensus 292 ng~~G~~~~-------~~~~~S~lcK~~l~~~f~~l~~~~~~~~~-~~~sY~e~K~~a 341 (374)
T smart00552 292 NGLTGKTQK-------SLGSPSRLCKKALFRLFQKLCSKLKRDDL-LHISYAEAKEAA 341 (374)
T ss_pred ECcCCeECC-------CCCCccHHHHHHHHHHHHHHHHhhccccc-CcCCHHHHHHhH
Confidence 999999883 25678999999999999999887654433 238999999775
No 2
>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]
Probab=100.00 E-value=1.4e-81 Score=637.75 Aligned_cols=323 Identities=41% Similarity=0.636 Sum_probs=262.2
Q ss_pred chHHHHHHHHHHHHhcCCCCCCCCCCCcceEEEEEEee-CCCCeEEEEEecCCCcccCCcCCCCCCcccchHHHHHHHHH
Q 017308 5 CWGDEVSKKVLWQYKSLPKKGKPQGREVTVLAAFLISS-PSKDLEVVALGTGTKCIGRSLLSPHGDIVNDSHAEIVARRA 83 (373)
Q Consensus 5 ~~ad~ia~~v~~~y~~L~~~gkp~~~ewtvlA~iVl~~-~~~~~~vVslgTGtKc~~~~~l~~~G~~lhD~HAEVLARR~ 83 (373)
.++|+||++|+++|++|+++|+|..+|||||||||+.. +..+.+||||||||||++++.|+.+|.+|||||||||||||
T Consensus 173 ~~~~~Ia~lv~~kF~~L~k~~kp~~~~~tvLAgvv~~~~~~~~~~VVslgTGtKcv~g~~ls~~G~iLnDcHAEIlARR~ 252 (542)
T KOG2777|consen 173 TLGDEIAELVLEKFDELTKNGKPIPREWTVLAGVVMTKRDGEDKKVVSLGTGTKCVSGDKLSPNGLILNDCHAEILARRG 252 (542)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCccchhhhhhhhhhcccccccceEEEeeccCcccCcceeCCCCCeeecccHHHHHHHH
Confidence 58999999999999999999999999999999999987 35678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccCCCCcccccCCCcCeeeeeCCCC-ceEeeCCcEEEEEeccCCCCccccccccCCCCC-----CCC
Q 017308 84 LLRFFYTEVLNKQKCSNGIEGLRDDVFNNFLFELGPTG-KYRFREGWQLHLYISQLPCGDASLSSCHSAPRN-----FFS 157 (373)
Q Consensus 84 f~r~Ly~el~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~Lk~~v~lhlYiS~~PCGDAsi~~~~~~~~~-----~~~ 157 (373)
|+||||+||+.+.+. ..+.||+..++| +|+||+||.||||||++|||||+++.+.....+ ...
T Consensus 253 llRfLy~eL~l~~~~-----------~~~Sif~~~~~~~~~~LK~nv~fhLYiS~~PCGdA~i~~~~~~~~~~~~~~~~~ 321 (542)
T KOG2777|consen 253 LLRFLYSELQLYNSE-----------KKDSIFEKSKEGGKFTLKENVLFHLYISTSPCGDARIFLPSEPATKKLKHVNST 321 (542)
T ss_pred HHHHHHHHHHHhhcc-----------CCCceeeecCCCCceecCCCcEEEEEecCCCCCchhhhCccccccccCCCCCch
Confidence 999999999998642 134588866554 699999999999999999999999876543222 111
Q ss_pred cCCCCCCccccCCCccccccccccccceeecCCCC--CCcceeechhhHHHHHHHhhhhhhhhhcccccceeceEEeCCC
Q 017308 158 REGNSLSSVDELNGFKDGIYDSLQHIGRVQRKPGR--GDTTLSVSCSDKIARWNAVGVQGALLSYFLQPVYLSSITVGRS 235 (373)
Q Consensus 158 ~~~~~~~~~~~~~g~~~~~~~~~~~~g~vrtKPgr--gd~t~smSCSDKl~rWnvlGlQGaLLS~~~ePiylssivig~~ 235 (373)
..+..+..++.++|+. .++..+.||||||| |++++||||||||+|||||||||||||||++||||+|||||..
T Consensus 322 ~~~~~~~~~~~g~g~~-----~~~~~~~V~T~~Gr~~ger~~smSCSDKLaRWNVLGvQGALLsh~lePIYlssIvlg~~ 396 (542)
T KOG2777|consen 322 RRGQLRTKIESGEGTI-----PVGSPDAVQTKPGRLDGERLLSMSCSDKLARWNVLGVQGALLSHFLEPIYLSSIVLGKS 396 (542)
T ss_pred hhhccchhhhcccccc-----ccCCCCcccccCCcccCceeeEechHHHHHHHHHHhhHHHHHHHhhccceeeeeEeccc
Confidence 2334444444555553 36678999999999 8899999999999999999999999999999999999999975
Q ss_pred CCCCCCcchHHHHhhhhhccccc-ccccCCCCceeccceEEeccCCCcccccCccccCCCCCcccEEeeCCC-CceeEEC
Q 017308 236 PNTSEDFPLEEHLKRSLYDRILP-LSEELSSPFQVNKPIFLAASVPPEEFQHSETASSTLTCGYSICWNKSG-LHEVILG 313 (373)
Q Consensus 236 ~~~~~~~~~~~~l~RAl~~Rl~~-~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~si~W~~~~-~~Evi~~ 313 (373)
.++ .++|.||++.|+.. +. .+|.+|.+|.|.+...+ +.+ + ++..++++|+||+.++ ..||++.
T Consensus 397 ~~~------~~~L~rAi~~R~~~~~~-~lp~~~~~n~p~~~~v~--~~~-r-----~~~~~~~~slnW~~~~~~~ev~d~ 461 (542)
T KOG2777|consen 397 LHS------PEHLSRAIHGRLSNFLG-NLPPPYILNPPLLSRVS--DAE-R-----QPGKMTPFSLNWSLGDYDLEVNDV 461 (542)
T ss_pred cCC------HHHHHHHHhcccccccC-CCCCceeecCcccccCC--HhH-h-----ccccCCceeeeeecCCcceEeccc
Confidence 443 36999999999988 54 48999999999877642 222 1 2333445899999877 7899888
Q ss_pred CCCccCCcCCCCCCCCCCccHHHHHHHHHHHHHhhhhhhhcccCCCCcHHHHHhh
Q 017308 314 TTGRKQGTSAKGALSPSTQSSLCKNRLLQVFLSLKHESKIRCLAADISYRELKVV 368 (373)
Q Consensus 314 ~~G~k~g~~~K~~~~~~~~S~lcK~~l~~~f~~l~~~~~~~~~~~~~tY~e~K~~ 368 (373)
.+|++-+ +.+|||||++||..|..+......... ...+|.+.|..
T Consensus 462 ~~G~~~~---------~~~srlcK~~~~~~~~~l~~~~~~~~~-~~~~y~~ak~~ 506 (542)
T KOG2777|consen 462 TTGRTSL---------GSASRLCKASLFEAFRKLHGLLPKLLL-LPLSYGEAKAE 506 (542)
T ss_pred ccCcccC---------CCccHHHHHHHHHHHHHHHHhhccccc-cchhHHHHHHH
Confidence 8888432 346999999999999999887653332 23345544443
No 3
>PF02137 A_deamin: Adenosine-deaminase (editase) domain; InterPro: IPR002466 Editase (3.5 from EC) are enzymes that alter mRNA by catalyzing the site-selective deamination of adenosine residue into inosine residue. The editase domain contains the active site and binds three Zn atoms []. Several editases share a common global arrangement of domains, from N to C terminus: two 'double-stranded RNA-specific adenosine deaminase' (DRADA) repeat domains (IPR000607 from INTERPRO), followed by three 'double-stranded RNA binding' (DsRBD) domains (IPR001159 from INTERPRO), followed by the editase domain. Other editases have a simplified domains structure with no DRADA_REP and possibly fewer DSRBD domains. Editase that deaminate cytidine are not detected by this signature.; GO: 0003723 RNA binding, 0004000 adenosine deaminase activity, 0006396 RNA processing; PDB: 1ZY7_B.
Probab=100.00 E-value=8.4e-79 Score=602.64 Aligned_cols=304 Identities=40% Similarity=0.618 Sum_probs=168.2
Q ss_pred EEecCCCcccCCcCCCCCCcccchHHHHHHHHHHHHHHHHHHHhhhccCCCCcccccCCCcCeeeeeC--CCCceEeeCC
Q 017308 51 ALGTGTKCIGRSLLSPHGDIVNDSHAEIVARRALLRFFYTEVLNKQKCSNGIEGLRDDVFNNFLFELG--PTGKYRFREG 128 (373)
Q Consensus 51 slgTGtKc~~~~~l~~~G~~lhD~HAEVLARR~f~r~Ly~el~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~Lk~~ 128 (373)
||||||||+|.++++.+|++||||||||||||||+||||+||+.+...... .....||+.. .+++|+||||
T Consensus 1 SLgTGtKcl~~~~~~~~G~~lhD~HAEVLARR~f~r~L~~el~~~~~~~~~-------~~~~sif~~~~~~~~~~~Lk~~ 73 (343)
T PF02137_consen 1 SLGTGTKCLPASKLSSDGRVLHDCHAEVLARRAFLRFLYEELELLLSGGSG-------DKESSIFERNPDGSGKFRLKPG 73 (343)
T ss_dssp EEEE---B--GGG--TTS-S-SB--HHHHHHHHHHHHHHHHHHHHHH-HH--------HHHHSSEEE-TTSS--EEE-TT
T ss_pred CccCCCcccCchhcccCCCEEeeCcHHHHHHHHHHHHHHHHHHHHhcCCCc-------cccCceEeecCCCCceeEeCCC
Confidence 799999999999999999999999999999999999999999998643100 0123467654 5679999999
Q ss_pred cEEEEEeccCCCCccccccccCCCCCC--CCc---CCCCCCccccCCCcc-------ccccccccccceeecCCCCCCcc
Q 017308 129 WQLHLYISQLPCGDASLSSCHSAPRNF--FSR---EGNSLSSVDELNGFK-------DGIYDSLQHIGRVQRKPGRGDTT 196 (373)
Q Consensus 129 v~lhlYiS~~PCGDAsi~~~~~~~~~~--~~~---~~~~~~~~~~~~g~~-------~~~~~~~~~~g~vrtKPgrgd~t 196 (373)
|+||||||++|||||||+.+...+.+. ... ........ .+.+.. ......++..|++||||||||++
T Consensus 74 v~lhlY~S~~PCGdAsi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~RtKPgrgd~~ 152 (343)
T PF02137_consen 74 VKLHLYISQAPCGDASIFPLSSSPWESDPPPESDAQSPLRTKI-TGAKTVPGEPSDPLRGRANYQQLGIVRTKPGRGDRT 152 (343)
T ss_dssp EEEEEEESS--TTHHHHS-TT--------------TT--EEEE-TSSSEEE--SS----------HHHHH-----TT---
T ss_pred eEEEEEeccCccCcccccccccccccccccccccccccccccc-CCCcccCCCccccccccccccCCceeeeeccccCCC
Confidence 999999999999999999876521110 000 00000000 011110 11124578899999999999999
Q ss_pred eeechhhHHHHHHHhhhhhhhhhcccccceeceEEeCCCCCCCCCcchHHHHhhhhhcccccccccCCCCceeccceEEe
Q 017308 197 LSVSCSDKIARWNAVGVQGALLSYFLQPVYLSSITVGRSPNTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKPIFLA 276 (373)
Q Consensus 197 ~smSCSDKl~rWnvlGlQGaLLS~~~ePiylssivig~~~~~~~~~~~~~~l~RAl~~Rl~~~~~~l~~~~~~~~p~~~~ 276 (373)
.||||||||++||||||||||||||||||||++||||.++.. .+++|+|||++|+......++.||++++|.+..
T Consensus 153 ~smSCSDKLarW~vlGlQGaLLS~llePiylssivvg~~~~~-----~~~~l~RA~~~R~~~~~~~l~~~~~~~~p~~~~ 227 (343)
T PF02137_consen 153 PSMSCSDKLARWNVLGLQGALLSHLLEPIYLSSIVVGDCPKF-----SQEALRRAFCGRLKSLSSRLPPPYRVNPPLIFF 227 (343)
T ss_dssp EEE-HHHHHHHHHHH-SSHHHHHTTB----EEEEEES--SS-------HHHHHHHHTGGG-TT-----TT------EEE-
T ss_pred cceecccHHHHHHHhccccccHHHhcccceeeEEEEecCCCC-----CHHHHHhhhhcccccccccCCCCceecCcceee
Confidence 999999999999999999999999999999999999976421 246999999999955556789999999998874
Q ss_pred ccCCCcccccCccccCCCCCcccEEeeCCCCceeEECCCCccCCcCCCCCCCCCCccHHHHHHHHHHHHHhhhhhhhccc
Q 017308 277 ASVPPEEFQHSETASSTLTCGYSICWNKSGLHEVILGTTGRKQGTSAKGALSPSTQSSLCKNRLLQVFLSLKHESKIRCL 356 (373)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~si~W~~~~~~Evi~~~~G~k~g~~~K~~~~~~~~S~lcK~~l~~~f~~l~~~~~~~~~ 356 (373)
.+.. .............++++|++|+..+..|+++ +|+++|..+|+...++++|+|||++||+.|.+|...+....+
T Consensus 228 ~~~~-~~~~~~~~~~~~~~s~~Si~W~~~~~~~i~~--~g~k~G~~~k~~~~~~~~S~lck~~l~~~f~~l~~~~~~~~~ 304 (343)
T PF02137_consen 228 SSSR-FSDSSASSSEKAKPSNLSINWCASGEEEIEV--NGVKQGRSKKKSPSPKAASRLCKAALFELFLQLLKALNRSDL 304 (343)
T ss_dssp ------E-SS------S---SEEEEEET-T-SS-EE--EETTTTE-----ETTS---TTSHHHHHHHHHHHHCCS-SS--
T ss_pred cccc-cccccccccCCCCCCCceEEEEecCCcEEEE--eCCCCCcccccCCCCCccCcccHHHHHHHHHHHHHhhccccC
Confidence 2210 0122233344566789999999855667776 999999988888889999999999999999999877765666
Q ss_pred CCCCcHHHHHhhcc
Q 017308 357 AADISYRELKVVLI 370 (373)
Q Consensus 357 ~~~~tY~e~K~~a~ 370 (373)
....||.++|..|.
T Consensus 305 ~~~~tY~~~K~~a~ 318 (343)
T PF02137_consen 305 KSSKTYYEAKRAAS 318 (343)
T ss_dssp SS--SHHHHHHT-H
T ss_pred CCcccHHHHHHCHH
Confidence 66679999998763
No 4
>COG0590 CumB Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=77.04 E-value=15 Score=32.48 Aligned_cols=33 Identities=33% Similarity=0.334 Sum_probs=21.8
Q ss_pred CeEEEEEecCCCcccCCcCCCCCCcccchHHHHHHHHHHHHH
Q 017308 46 DLEVVALGTGTKCIGRSLLSPHGDIVNDSHAEIVARRALLRF 87 (373)
Q Consensus 46 ~~~vVslgTGtKc~~~~~l~~~G~~lhD~HAEVLARR~f~r~ 87 (373)
+-++|+-|-++..-..+-.. ||||+|.|.+-+-
T Consensus 38 ~~~ii~~~~N~~~~~~dpta---------HAEi~air~a~~~ 70 (152)
T COG0590 38 DGEIIARGHNRREEDNDPTA---------HAEILAIRAAAET 70 (152)
T ss_pred CCCEEEEecCccccCCCccc---------cHHHHHHHHHHHh
Confidence 44677777766554433221 9999999988444
No 5
>TIGR02571 ComEB ComE operon protein 2. This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity.
Probab=48.07 E-value=64 Score=28.52 Aligned_cols=13 Identities=23% Similarity=0.864 Sum_probs=10.5
Q ss_pred EEEEeccCCCCcc
Q 017308 131 LHLYISQLPCGDA 143 (373)
Q Consensus 131 lhlYiS~~PCGDA 143 (373)
..||+|..||--+
T Consensus 88 ~tlYvT~ePC~~C 100 (151)
T TIGR02571 88 AEIYVTHFPCLQC 100 (151)
T ss_pred cEEEEeCCCcHHH
Confidence 5789999999643
No 6
>PRK10860 tRNA-specific adenosine deaminase; Provisional
Probab=38.69 E-value=30 Score=31.34 Aligned_cols=15 Identities=27% Similarity=0.456 Sum_probs=11.3
Q ss_pred EEEEeccCCCCcccc
Q 017308 131 LHLYISQLPCGDASL 145 (373)
Q Consensus 131 lhlYiS~~PCGDAsi 145 (373)
.-||+|-.||--++.
T Consensus 83 ~tlY~TlEPC~MC~~ 97 (172)
T PRK10860 83 ATLYVTLEPCVMCAG 97 (172)
T ss_pred cEEEeeCCCcHHHHH
Confidence 468999999965443
No 7
>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protei
Probab=35.60 E-value=41 Score=27.59 Aligned_cols=16 Identities=25% Similarity=0.403 Sum_probs=13.0
Q ss_pred EEEEeccCCCCccccc
Q 017308 131 LHLYISQLPCGDASLS 146 (373)
Q Consensus 131 lhlYiS~~PCGDAsi~ 146 (373)
..||+|..||.-+++-
T Consensus 68 ~~ly~t~EPC~mC~~a 83 (109)
T cd01285 68 CTLYTTLEPCPMCAGA 83 (109)
T ss_pred eEEEEeCCChHHHHHH
Confidence 6789999999876653
No 8
>PF15134 DUF4570: Domain of unknown function (DUF4570)
Probab=29.54 E-value=31 Score=29.04 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=17.8
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhh
Q 017308 70 IVNDSHAEIVARRALLRFFYTEVLNK 95 (373)
Q Consensus 70 ~lhD~HAEVLARR~f~r~Ly~el~~~ 95 (373)
-|++-|.|||++|.+ |+++++.-
T Consensus 10 ~Ls~kheEIlsqR~~---LLq~mE~~ 32 (109)
T PF15134_consen 10 QLSKKHEEILSQREM---LLQQMENK 32 (109)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHH
Confidence 478899999999987 56666553
No 9
>cd01283 cytidine_deaminase Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. Cytidine deaminases catalyze the deamination of cytidine to uridine and are important in the pyrimadine salvage pathway in many cell types, from bacteria to humans. This family also includes the apoBec proteins, which are a mammal specific expansion of RNA editing enzymes, and the closely related phorbolins, and the AID (activation-induced) enzymes.
Probab=27.21 E-value=57 Score=26.75 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=14.0
Q ss_pred EEEEEec-----cCCCCcccccc
Q 017308 130 QLHLYIS-----QLPCGDASLSS 147 (373)
Q Consensus 130 ~lhlYiS-----~~PCGDAsi~~ 147 (373)
..-+|+| -+|||.++-..
T Consensus 65 ~~~i~vs~~~~~~sPC~~C~~~l 87 (112)
T cd01283 65 LVTWAVSDEGGVWSPCGACRQVL 87 (112)
T ss_pred EEEEEEECCCCccCCCHHHHHHH
Confidence 4568888 89999987653
No 10
>PF14737 DUF4470: Domain of unknown function (DUF4470)
Probab=22.83 E-value=63 Score=26.18 Aligned_cols=21 Identities=33% Similarity=0.395 Sum_probs=18.5
Q ss_pred CcccchHHHHHHHHHHHHHHH
Q 017308 69 DIVNDSHAEIVARRALLRFFY 89 (373)
Q Consensus 69 ~~lhD~HAEVLARR~f~r~Ly 89 (373)
-.|+|.++||+||--|+-.++
T Consensus 56 ~~l~D~~~~vlARnlLlL~ll 76 (100)
T PF14737_consen 56 FTLNDINPEVLARNLLLLQLL 76 (100)
T ss_pred EEEecCcHHHHHHHHHHHHHH
Confidence 489999999999999887775
Done!