Query 017308
Match_columns 373
No_of_seqs 129 out of 426
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 12:20:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017308.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017308hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zy7_A RNA-specific adenosine 100.0 4.8E-86 1.6E-90 662.3 25.1 330 4-370 23-368 (403)
2 1p6o_A Cytosine deaminase; hyd 46.8 4.9 0.00017 34.6 0.5 15 131-145 85-99 (161)
3 2a8n_A Cytidine and deoxycytid 43.2 9.4 0.00032 31.9 1.7 16 131-146 74-89 (144)
4 1wwr_A TRNA adenosine deaminas 43.1 8 0.00027 33.7 1.3 16 131-146 93-108 (171)
5 2b3j_A TRNA adenosine deaminas 41.0 11 0.00039 32.1 1.9 16 131-146 77-92 (159)
6 1z3a_A TRNA-specific adenosine 39.8 13 0.00046 32.0 2.2 15 131-145 79-93 (168)
7 2nx8_A TRNA-specific adenosine 37.3 22 0.00074 31.1 3.2 15 131-145 86-100 (179)
8 1wkq_A Guanine deaminase; doma 36.7 22 0.00076 30.6 3.1 15 131-145 82-96 (164)
9 2g84_A Cytidine and deoxycytid 36.7 20 0.00068 31.7 2.9 15 131-145 105-119 (197)
10 3dh1_A TRNA-specific adenosine 32.3 26 0.00089 30.9 2.9 15 74-88 74-88 (189)
11 3v4k_A DNA DC->DU-editing enzy 26.0 13 0.00046 33.3 -0.2 18 129-146 100-117 (203)
No 1
>1zy7_A RNA-specific adenosine deaminase B1, isoform drada2A; alpha/beta deaminase motif, zinc coordination, ionsitol hexakisphosphate, hydrolase; HET: IHP; 1.70A {Homo sapiens}
Probab=100.00 E-value=4.8e-86 Score=662.33 Aligned_cols=330 Identities=34% Similarity=0.548 Sum_probs=258.4
Q ss_pred cchHHHHHHHHHHHHhcCCCCCCCCCCCcceEEEEEEeeC--CCCeEEEEEecCCCcccCCcCCCCCCcccchHHHHHHH
Q 017308 4 ECWGDEVSKKVLWQYKSLPKKGKPQGREVTVLAAFLISSP--SKDLEVVALGTGTKCIGRSLLSPHGDIVNDSHAEIVAR 81 (373)
Q Consensus 4 ~~~ad~ia~~v~~~y~~L~~~gkp~~~ewtvlA~iVl~~~--~~~~~vVslgTGtKc~~~~~l~~~G~~lhD~HAEVLAR 81 (373)
..|||+||++|+++|++||++|||...|||||||||++.+ .++++||||||||||+++++++.+|++|||||||||||
T Consensus 23 ~~~ad~Ia~~v~~~f~~L~~~~kp~~~~~tvLA~iV~~~~~~~~~~~vVslgTGtKc~~~~~~~~~G~vlhD~HAEVlAR 102 (403)
T 1zy7_A 23 QVLADAVSRLVLGKFGDLTDNFSSPHARRKVLAGVVMTTGTDVKDAKVISVSTGTKCINGEYMSDRGLALNDCHAEIISR 102 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTSGGGCCSCEEEEEEEESSCGGGCEEEEEEECCCBCCGGGCCTTSCSCSBCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEEEEEEccCCCCceEEEEEcCCCCccCcccccCCCCeeeeCCHHHHHH
Confidence 3689999999999999999999999899999999999975 34799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccCCCCcccccCCCcCeeeeeCCCCceEeeCCcEEEEEeccCCCCccccccccCCCCCC-----C
Q 017308 82 RALLRFFYTEVLNKQKCSNGIEGLRDDVFNNFLFELGPTGKYRFREGWQLHLYISQLPCGDASLSSCHSAPRNF-----F 156 (373)
Q Consensus 82 R~f~r~Ly~el~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Lk~~v~lhlYiS~~PCGDAsi~~~~~~~~~~-----~ 156 (373)
|||+||||+||+.+.... ++. ...||++.++|+|+||+||+||||||++|||||||+.+....... +
T Consensus 103 Raf~r~L~~ql~~~~~~~-------~~~-~~sif~~~~~~~~~Lk~~v~lhlY~S~~PCGdAsi~~p~~~~~~~~~~~~~ 174 (403)
T 1zy7_A 103 RSLLRFLYTQLELYLNNK-------DDQ-KRSIFQKSERGGFRLKENVQFHLYISTSPCGDARIFSPHEPILEEPADRHP 174 (403)
T ss_dssp HHHHHHHHHHHHHHHHCH-------HHH-HHCSEEECTTSSEEECTTEEEEEEESSCCTTHHHHC---------------
T ss_pred HHHHHHHHHHHHHHhccc-------cCC-CCceEEECCCCCeEECCCcEEEEEeccCCCCCcccCCccccccccccccCc
Confidence 999999999998774210 011 235899888889999999999999999999999998765322110 0
Q ss_pred --CcCCCCCCccccCCCccccccccccccceeecCCC--CCCcceeechhhHHHHHHHhhhhhhhhhcccccceeceEEe
Q 017308 157 --SREGNSLSSVDELNGFKDGIYDSLQHIGRVQRKPG--RGDTTLSVSCSDKIARWNAVGVQGALLSYFLQPVYLSSITV 232 (373)
Q Consensus 157 --~~~~~~~~~~~~~~g~~~~~~~~~~~~g~vrtKPg--rgd~t~smSCSDKl~rWnvlGlQGaLLS~~~ePiylssivi 232 (373)
...+.+...++.++|+.... ..+.++|+|| ||++|+||||||||+|||||||||||||||++||||++|||
T Consensus 175 ~~~~~g~lr~k~~~g~g~~p~~-----~~~~~~~~~gvl~g~~t~smSCSDKlarWnvlGlQGaLLs~fi~PiYlssiv~ 249 (403)
T 1zy7_A 175 NRKARGQLRTKIESGEGTIPVR-----SNASIQTWDGVLQGERLLTMSCSDKIARWNVVGIQGSLLSIFVEPIYFSSIIL 249 (403)
T ss_dssp --CCTTCCEEEETTCSSCEECC-----SSCCCCCHHHHHTTCCCEEECHHHHHHHHHHHCSSHHHHHTTBCCCCEEEEEE
T ss_pred chhhccccceeeccCCCCCCCC-----CcccccccccccccCcceeechHHHHHHHHHhccchHHHhhhcccceeEEEEe
Confidence 01122223333344443211 1233566666 88999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchHHHHhhhhhcccccccccCCCCceeccceEEeccCCCcccccCccccCCCCCcccEEeeCCC-CceeE
Q 017308 233 GRSPNTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKPIFLAASVPPEEFQHSETASSTLTCGYSICWNKSG-LHEVI 311 (373)
Q Consensus 233 g~~~~~~~~~~~~~~l~RAl~~Rl~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~si~W~~~~-~~Evi 311 (373)
|.+++ .++|+|||++|+..+ ..+|.||++++|.+...+.. +.+ .+..++++|++|+.++ ..||+
T Consensus 250 g~~~~-------~~~l~RA~~~R~~~~-~~lp~~~~~~~p~~~~~~~~--~~r-----~~~~~~~~Si~W~~~~~~~Evi 314 (403)
T 1zy7_A 250 GSLYH-------GDHLSRAMYQRISNI-EDLPPLYTLNKPLLSGISNA--EAR-----QPGKAPNFSVNWTVGDSAIEVI 314 (403)
T ss_dssp SSCCC-------HHHHHHHHTGGGTTC-CCCCTTCCCCCCEEEECSSC--CCC-----CCSCCCSEEEEEETTCSSCEEE
T ss_pred CCcCC-------HHHHHHHHHHhhhhh-ccCCCcceecccccccCCcc--ccc-----cCCCCCCeeEEEEcCCCceEEE
Confidence 98753 479999999999875 35799999999998764332 222 1223557899999764 58999
Q ss_pred ECCCCccCCcCCCCCCCCCCccHHHHHHHHHHHHHhhhhhhhc----ccCCCCcHHHHHhhcc
Q 017308 312 LGTTGRKQGTSAKGALSPSTQSSLCKNRLLQVFLSLKHESKIR----CLAADISYRELKVVLI 370 (373)
Q Consensus 312 ~~~~G~k~g~~~K~~~~~~~~S~lcK~~l~~~f~~l~~~~~~~----~~~~~~tY~e~K~~a~ 370 (373)
+|.+|++. ++.+|+|||++||++|.+|...+... ......||.|+|..|.
T Consensus 315 ~g~tGk~~---------~~~~SrlcK~~l~~~f~~l~~~l~~~~~~~~~~~~~tY~e~K~~a~ 368 (403)
T 1zy7_A 315 NATTGKDE---------LGRASRLCKHALYCRWMRVHGKVPSHLLRSKITKPNVYHESKLAAK 368 (403)
T ss_dssp ETTTTEET---------TSCCCTTSHHHHHHHHHHHHTTSCGGGCSSCCSSCCSHHHHHHTCH
T ss_pred ECCCCCCC---------cCCcCHHHHHHHHHHHHHHHHHhccccccccCCCccCHHHHHHhhH
Confidence 99999742 34579999999999999998765432 1345679999998763
No 2
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A
Probab=46.78 E-value=4.9 Score=34.58 Aligned_cols=15 Identities=27% Similarity=0.472 Sum_probs=11.9
Q ss_pred EEEEeccCCCCcccc
Q 017308 131 LHLYISQLPCGDASL 145 (373)
Q Consensus 131 lhlYiS~~PCGDAsi 145 (373)
.-||+|..||+-+..
T Consensus 85 ~tlYvT~EPC~mC~~ 99 (161)
T 1p6o_A 85 TTLYTTLSPCDMCTG 99 (161)
T ss_dssp EEEEEEECCCHHHHH
T ss_pred cccccCCCCCHHHHH
Confidence 468999999986654
No 3
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=43.24 E-value=9.4 Score=31.95 Aligned_cols=16 Identities=25% Similarity=0.578 Sum_probs=12.5
Q ss_pred EEEEeccCCCCccccc
Q 017308 131 LHLYISQLPCGDASLS 146 (373)
Q Consensus 131 lhlYiS~~PCGDAsi~ 146 (373)
.-||+|..||+-++.-
T Consensus 74 ~tly~T~ePC~mC~~a 89 (144)
T 2a8n_A 74 ADLYVTLEPCTMCAAA 89 (144)
T ss_dssp CEEEEEECCBHHHHHH
T ss_pred eEEEECCCChHHHHHH
Confidence 3689999999877653
No 4
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=43.11 E-value=8 Score=33.66 Aligned_cols=16 Identities=31% Similarity=0.548 Sum_probs=12.8
Q ss_pred EEEEeccCCCCccccc
Q 017308 131 LHLYISQLPCGDASLS 146 (373)
Q Consensus 131 lhlYiS~~PCGDAsi~ 146 (373)
.-||+|..||+-++.-
T Consensus 93 ~tlYvT~EPC~mC~~a 108 (171)
T 1wwr_A 93 CELYVTLEPCIMCSYA 108 (171)
T ss_dssp EEEEESSCCBHHHHHH
T ss_pred eEEEECCCChHHHHHH
Confidence 4689999999877653
No 5
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=41.04 E-value=11 Score=32.10 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=12.6
Q ss_pred EEEEeccCCCCccccc
Q 017308 131 LHLYISQLPCGDASLS 146 (373)
Q Consensus 131 lhlYiS~~PCGDAsi~ 146 (373)
.-||+|..||+-++.-
T Consensus 77 ~tlyvT~EPC~mC~~a 92 (159)
T 2b3j_A 77 CTLYVTLEPCVMCAGT 92 (159)
T ss_dssp EEEEEEECCCHHHHHH
T ss_pred eEEEECCCCcHHHHHH
Confidence 4689999999876653
No 6
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A
Probab=39.77 E-value=13 Score=32.03 Aligned_cols=15 Identities=27% Similarity=0.456 Sum_probs=11.9
Q ss_pred EEEEeccCCCCcccc
Q 017308 131 LHLYISQLPCGDASL 145 (373)
Q Consensus 131 lhlYiS~~PCGDAsi 145 (373)
.-||+|..||+-++.
T Consensus 79 ~tlYvTlEPC~mC~~ 93 (168)
T 1z3a_A 79 ATLYVTLEPCVMCAG 93 (168)
T ss_dssp CEEEEEECCCHHHHH
T ss_pred cEEEEcCCCcHHHHH
Confidence 368999999976655
No 7
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=37.32 E-value=22 Score=31.08 Aligned_cols=15 Identities=27% Similarity=0.412 Sum_probs=11.9
Q ss_pred EEEEeccCCCCcccc
Q 017308 131 LHLYISQLPCGDASL 145 (373)
Q Consensus 131 lhlYiS~~PCGDAsi 145 (373)
.-||+|-.||+-++.
T Consensus 86 ~tlYvTlEPC~mCa~ 100 (179)
T 2nx8_A 86 TTLFVTIEPCVMCSG 100 (179)
T ss_dssp EEEEEEECCBHHHHH
T ss_pred eEEEECCCCcHHHHH
Confidence 468999999976554
No 8
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Probab=36.70 E-value=22 Score=30.56 Aligned_cols=15 Identities=33% Similarity=0.290 Sum_probs=11.8
Q ss_pred EEEEeccCCCCcccc
Q 017308 131 LHLYISQLPCGDASL 145 (373)
Q Consensus 131 lhlYiS~~PCGDAsi 145 (373)
.-||+|..||+-+..
T Consensus 82 ~tlYvT~EPC~mCa~ 96 (164)
T 1wkq_A 82 CILYTSCEPCPMCLG 96 (164)
T ss_dssp EEEEEEECCCHHHHH
T ss_pred eEEEEeCCChHHHHH
Confidence 468999999976654
No 9
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2
Probab=36.68 E-value=20 Score=31.74 Aligned_cols=15 Identities=27% Similarity=0.146 Sum_probs=11.4
Q ss_pred EEEEeccCCCCcccc
Q 017308 131 LHLYISQLPCGDASL 145 (373)
Q Consensus 131 lhlYiS~~PCGDAsi 145 (373)
.-||+|..||--+..
T Consensus 105 ~tlYvTlEPC~mCa~ 119 (197)
T 2g84_A 105 CELVTSAEPCVMCFG 119 (197)
T ss_dssp EEEEEEECCCHHHHH
T ss_pred EEEEEeCCCCHHHHH
Confidence 568999999964443
No 10
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens}
Probab=32.30 E-value=26 Score=30.87 Aligned_cols=15 Identities=40% Similarity=0.567 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHH
Q 017308 74 SHAEIVARRALLRFF 88 (373)
Q Consensus 74 ~HAEVLARR~f~r~L 88 (373)
.||||+|.|...+.+
T Consensus 74 ~HAEi~AI~~a~~~~ 88 (189)
T 3dh1_A 74 RHAEMVAIDQVLDWC 88 (189)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH
Confidence 699999999887654
No 11
>3v4k_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus interaction, hydrola metal-binding, nucleus; HET: DNA; 1.38A {Homo sapiens} PDB: 3v4j_A* 3ir2_A* 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A*
Probab=25.96 E-value=13 Score=33.33 Aligned_cols=18 Identities=17% Similarity=0.410 Sum_probs=15.4
Q ss_pred cEEEEEeccCCCCccccc
Q 017308 129 WQLHLYISQLPCGDASLS 146 (373)
Q Consensus 129 v~lhlYiS~~PCGDAsi~ 146 (373)
+++-.|+|-+||-+++-.
T Consensus 100 Y~vTwy~SWSPC~~CA~~ 117 (203)
T 3v4k_A 100 YRVTCFTSWSPCFSCAQE 117 (203)
T ss_pred EEEEEEEeCCChHHHHHH
Confidence 678999999999987653
Done!