Query 017308
Match_columns 373
No_of_seqs 129 out of 426
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 12:20:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017308.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017308hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2g84a1 c.97.1.2 (A:1-189) Put 67.8 4.6 0.00034 33.6 6.3 41 35-86 48-88 (189)
2 d1wkqa_ c.97.1.2 (A:) Guanine 40.7 8.3 0.00061 30.9 3.1 14 74-87 54-67 (158)
3 d2hxva2 c.97.1.2 (A:1-147) Rib 34.9 26 0.0019 27.3 5.3 34 35-85 26-59 (147)
4 d1p6oa_ c.97.1.2 (A:) Cytosine 23.8 8.7 0.00063 30.8 0.3 15 131-145 80-94 (156)
5 d1qr0a1 d.150.1.1 (A:1-101) 4' 22.5 27 0.002 25.2 3.0 46 79-137 45-90 (101)
6 d1wwra1 c.97.1.2 (A:1-151) tRN 21.7 32 0.0023 26.8 3.5 15 131-145 73-87 (151)
7 d2cqea1 g.66.1.1 (A:458-513) Z 18.6 40 0.0029 22.2 2.8 28 54-81 8-35 (56)
8 d1bdsa_ g.9.1.1 (A:) BDs-I def 15.2 19 0.0014 21.8 0.4 8 188-195 8-15 (43)
9 d1nbja_ g.3.3.2 (A:) Cycloviol 12.3 12 0.00085 21.3 -1.2 9 198-206 17-25 (30)
10 d1lmra_ g.3.6.3 (A:) ADO1 {Ass 7.2 99 0.0072 17.7 1.6 17 52-68 6-22 (35)
No 1
>d2g84a1 c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitrosomonas europaea [TaxId: 915]}
Probab=67.79 E-value=4.6 Score=33.63 Aligned_cols=41 Identities=27% Similarity=0.235 Sum_probs=22.4
Q ss_pred EEEEEEeeCCCCeEEEEEecCCCcccCCcCCCCCCcccchHHHHHHHHHHHH
Q 017308 35 LAAFLISSPSKDLEVVALGTGTKCIGRSLLSPHGDIVNDSHAEIVARRALLR 86 (373)
Q Consensus 35 lA~iVl~~~~~~~~vVslgTGtKc~~~~~l~~~G~~lhD~HAEVLARR~f~r 86 (373)
++|+|+.. ++-+||+-|.-. + ..+|+... |||++|.|-.-+
T Consensus 48 ~GaviV~~--~~g~Iia~g~N~-~------~~~~dpt~--HAEi~AI~~A~~ 88 (189)
T d2g84a1 48 FAAAVFER--DSGLLIAAGTNR-V------VPGRCSAA--HAEILALSLAQA 88 (189)
T ss_dssp CEEEEEET--TTCBEEEEEECC-T------TTTTCTTC--CHHHHHHHHHHH
T ss_pred EEEEEEEC--CCCEEEEEEcCC-c------CcCCCCcc--cHHHHHHHHHHH
Confidence 46666542 345888866433 1 11222211 999999876533
No 2
>d1wkqa_ c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus subtilis [TaxId: 1423]}
Probab=40.73 E-value=8.3 Score=30.95 Aligned_cols=14 Identities=36% Similarity=0.491 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHH
Q 017308 74 SHAEIVARRALLRF 87 (373)
Q Consensus 74 ~HAEVLARR~f~r~ 87 (373)
.|||++|.|...+-
T Consensus 54 ~HAE~~ai~~a~~~ 67 (158)
T d1wkqa_ 54 AHAEVTAIRKACKV 67 (158)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHh
Confidence 59999999876444
No 3
>d2hxva2 c.97.1.2 (A:1-147) Riboflavin biosynthesis protein RibD {Thermotoga maritima [TaxId: 2336]}
Probab=34.92 E-value=26 Score=27.27 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=21.2
Q ss_pred EEEEEEeeCCCCeEEEEEecCCCcccCCcCCCCCCcccchHHHHHHHHHHH
Q 017308 35 LAAFLISSPSKDLEVVALGTGTKCIGRSLLSPHGDIVNDSHAEIVARRALL 85 (373)
Q Consensus 35 lA~iVl~~~~~~~~vVslgTGtKc~~~~~l~~~G~~lhD~HAEVLARR~f~ 85 (373)
++|+|+.+ -+|||-|.-. ..| +.|||++|.+...
T Consensus 26 VGaViV~~----g~IIa~g~n~---------~~~----~~hae~~ai~~a~ 59 (147)
T d2hxva2 26 VGAVVVKD----GRIIAEGFHP---------YFG----GPHAERMAIESAR 59 (147)
T ss_dssp CEEEEEET----TEEEEEEECC---------STT----SCCHHHHHHHHHH
T ss_pred EEEEEEEC----CeEEEeecee---------ccC----CchHHHHHHHHHH
Confidence 45555532 3788887522 122 4699999998663
No 4
>d1p6oa_ c.97.1.2 (A:) Cytosine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=23.80 E-value=8.7 Score=30.82 Aligned_cols=15 Identities=27% Similarity=0.472 Sum_probs=11.3
Q ss_pred EEEEeccCCCCcccc
Q 017308 131 LHLYISQLPCGDASL 145 (373)
Q Consensus 131 lhlYiS~~PCGDAsi 145 (373)
.-||+|-.||-.++.
T Consensus 80 ~tlyvTlEPC~mC~~ 94 (156)
T d1p6oa_ 80 TTLYTTLSPCDMCTG 94 (156)
T ss_dssp EEEEEEECCCHHHHH
T ss_pred eEEEeeccCCHHHHH
Confidence 358999999965444
No 5
>d1qr0a1 d.150.1.1 (A:1-101) 4'-Phosphopantetheinyl transferase SFP {Bacillus subtilis [TaxId: 1423]}
Probab=22.54 E-value=27 Score=25.25 Aligned_cols=46 Identities=17% Similarity=0.113 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCcccccCCCcCeeeeeCCCCceEeeCCcEEEEEecc
Q 017308 79 VARRALLRFFYTEVLNKQKCSNGIEGLRDDVFNNFLFELGPTGKYRFREGWQLHLYISQ 137 (373)
Q Consensus 79 LARR~f~r~Ly~el~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Lk~~v~lhlYiS~ 137 (373)
|+-|.|+|+++.+.... .+.++.|..++.||=.|...-.+||=+|+
T Consensus 45 l~~r~llr~~l~~~~~~-------------~p~~i~~~~~~~GKP~l~~~~~i~FNiSH 90 (101)
T d1qr0a1 45 LLGDVLVRSVISRQYQL-------------DKSDIRFSTQEYGKPCIPDLPDAHFNISH 90 (101)
T ss_dssp HHHHHHHHHHHHHHTTC-------------CGGGCCCEECTTSCEECTTCTTCEEEEEE
T ss_pred HHHHHHHHHHHHHHhCC-------------CccceeEEeCCCCCccccCCCCcEEEecc
Confidence 45567778877654332 11344567777776556543345666665
No 6
>d1wwra1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Aquifex aeolicus [TaxId: 63363]}
Probab=21.70 E-value=32 Score=26.85 Aligned_cols=15 Identities=33% Similarity=0.560 Sum_probs=11.4
Q ss_pred EEEEeccCCCCcccc
Q 017308 131 LHLYISQLPCGDASL 145 (373)
Q Consensus 131 lhlYiS~~PCGDAsi 145 (373)
.-||+|-.||--++.
T Consensus 73 ~tlY~TlEPC~mC~~ 87 (151)
T d1wwra1 73 CELYVTLEPCIMCSY 87 (151)
T ss_dssp EEEEESSCCBHHHHH
T ss_pred cEeeecccCCcHHHH
Confidence 458999999966543
No 7
>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.65 E-value=40 Score=22.23 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=20.7
Q ss_pred cCCCcccCCcCCCCCCcccchHHHHHHH
Q 017308 54 TGTKCIGRSLLSPHGDIVNDSHAEIVAR 81 (373)
Q Consensus 54 TGtKc~~~~~l~~~G~~lhD~HAEVLAR 81 (373)
||+||+.++.=..+=.-|.|---|+|+.
T Consensus 8 tg~kCy~gd~C~FSH~pLt~~t~~lL~K 35 (56)
T d2cqea1 8 TTGNCINGDDCMFSHDPLTEETRELLDK 35 (56)
T ss_dssp HTSCCSSCTTCSSBCCCCCHHHHHHHHH
T ss_pred cCCcccCCCcccccCCccCHHHHHHHHH
Confidence 8999998876544446888877777664
No 8
>d1bdsa_ g.9.1.1 (A:) BDs-I defensin {Sea anemone (Anemonia sulcata) [TaxId: 6108]}
Probab=15.25 E-value=19 Score=21.79 Aligned_cols=8 Identities=75% Similarity=1.294 Sum_probs=6.2
Q ss_pred cCCCCCCc
Q 017308 188 RKPGRGDT 195 (373)
Q Consensus 188 tKPgrgd~ 195 (373)
-||||||-
T Consensus 8 gkpgrgdl 15 (43)
T d1bdsa_ 8 GKPGRGDL 15 (43)
T ss_dssp SCCSCCEE
T ss_pred CCCCCCcE
Confidence 48999883
No 9
>d1nbja_ g.3.3.2 (A:) Cycloviolacin O1 {Plant (Viola odorata) [TaxId: 97441]}
Probab=12.26 E-value=12 Score=21.34 Aligned_cols=9 Identities=33% Similarity=0.918 Sum_probs=6.4
Q ss_pred eechhhHHH
Q 017308 198 SVSCSDKIA 206 (373)
Q Consensus 198 smSCSDKl~ 206 (373)
--|||||.+
T Consensus 17 gc~c~~kvc 25 (30)
T d1nbja_ 17 GCSCSNRVC 25 (30)
T ss_dssp TCEEETTEE
T ss_pred cccccCcee
Confidence 347899864
No 10
>d1lmra_ g.3.6.3 (A:) ADO1 {Assassin bug (Agriosphodrus dohrni) [TaxId: 184613]}
Probab=7.18 E-value=99 Score=17.75 Aligned_cols=17 Identities=35% Similarity=0.710 Sum_probs=12.4
Q ss_pred EecCCCcccCCcCCCCC
Q 017308 52 LGTGTKCIGRSLLSPHG 68 (373)
Q Consensus 52 lgTGtKc~~~~~l~~~G 68 (373)
|--|+||++..+-.-.|
T Consensus 6 lprgskclgenkqcc~~ 22 (35)
T d1lmra_ 6 LPRGSKCLGENKQCCKG 22 (35)
T ss_dssp CCTTCCCSSCCCCCCTT
T ss_pred ccccccccccchhhccC
Confidence 45699999987765544
Done!