BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017309
         (373 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1QHU|A Chain A, Mammalian Blood Serum Haemopexin Deglycosylated And In
           Complex With Its Ligand Haem
 pdb|1QJS|A Chain A, Mammalian Blood Serum Haemopexin Glycosylated-Native
           Protein And In Complex With Its Ligand Haem
 pdb|1QJS|B Chain B, Mammalian Blood Serum Haemopexin Glycosylated-Native
           Protein And In Complex With Its Ligand Haem
          Length = 460

 Score = 28.1 bits (61), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 10/19 (52%), Positives = 16/19 (84%)

Query: 225 VVKWSGMPFAIGIYGFCYS 243
           +VK SG+P A+G++G C+S
Sbjct: 1   MVKASGIPIALGVWGLCWS 19


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.141    0.442 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,454,598
Number of Sequences: 62578
Number of extensions: 402230
Number of successful extensions: 852
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 843
Number of HSP's gapped (non-prelim): 14
length of query: 373
length of database: 14,973,337
effective HSP length: 100
effective length of query: 273
effective length of database: 8,715,537
effective search space: 2379341601
effective search space used: 2379341601
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)