Query 017309
Match_columns 373
No_of_seqs 140 out of 1525
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 07:26:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017309.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017309hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1304 Amino acid transporter 100.0 1.1E-50 2.3E-55 373.7 23.0 325 43-373 44-393 (449)
2 PTZ00206 amino acid transporte 100.0 1.9E-48 4.2E-53 375.1 29.2 329 44-373 58-408 (467)
3 KOG1303 Amino acid transporter 100.0 4.3E-46 9.2E-51 349.2 25.5 326 42-370 34-373 (437)
4 PF01490 Aa_trans: Transmembra 100.0 3.8E-46 8.3E-51 357.0 0.7 326 44-373 1-353 (409)
5 PLN03074 auxin influx permease 100.0 9.1E-40 2E-44 313.5 24.9 315 44-370 44-375 (473)
6 KOG1305 Amino acid transporter 100.0 6.5E-39 1.4E-43 299.4 19.3 329 43-373 3-354 (411)
7 KOG4303 Vesicular inhibitory a 100.0 7E-37 1.5E-41 266.7 10.1 319 40-368 111-452 (524)
8 COG0814 SdaC Amino acid permea 100.0 3.4E-29 7.4E-34 237.2 26.9 283 43-330 6-295 (415)
9 TIGR00837 araaP aromatic amino 99.9 3.2E-22 7E-27 189.6 23.1 308 52-367 3-328 (381)
10 PF03222 Trp_Tyr_perm: Tryptop 99.9 3.5E-21 7.6E-26 181.4 28.3 314 45-367 2-334 (394)
11 PRK10483 tryptophan permease; 99.9 5.3E-21 1.1E-25 178.6 27.3 315 43-367 8-342 (414)
12 PRK09664 tryptophan permease T 99.9 2.2E-20 4.7E-25 174.3 26.2 312 46-367 9-343 (415)
13 PRK15132 tyrosine transporter 99.9 2.5E-20 5.4E-25 174.9 25.7 311 47-366 4-330 (403)
14 TIGR00814 stp serine transport 99.8 5.1E-18 1.1E-22 159.7 26.1 309 52-366 9-347 (397)
15 PRK13629 threonine/serine tran 99.8 1.6E-17 3.4E-22 155.4 26.6 309 52-366 25-383 (443)
16 TIGR00912 2A0309 spore germina 99.7 5.2E-15 1.1E-19 139.2 26.2 285 44-340 1-300 (359)
17 PRK10655 potE putrescine trans 99.7 6.3E-14 1.4E-18 135.4 30.6 236 42-285 4-246 (438)
18 PRK10435 cadB lysine/cadaverin 99.7 1.3E-14 2.9E-19 139.8 25.2 238 42-288 3-247 (435)
19 TIGR01773 GABAperm gamma-amino 99.7 2.2E-14 4.8E-19 139.1 26.4 236 39-285 7-258 (452)
20 TIGR00906 2A0303 cationic amin 99.7 5E-14 1.1E-18 139.2 28.2 244 41-284 25-287 (557)
21 TIGR00930 2a30 K-Cl cotranspor 99.7 2.9E-14 6.3E-19 147.3 26.6 242 41-283 73-335 (953)
22 PRK10249 phenylalanine transpo 99.7 1.8E-13 3.8E-18 132.8 28.5 235 41-286 18-267 (458)
23 PRK11021 putative transporter; 99.6 1.2E-13 2.6E-18 132.3 26.4 229 46-283 1-232 (410)
24 PRK10644 arginine:agmatin anti 99.6 1E-13 2.2E-18 134.1 25.6 239 42-287 6-250 (445)
25 PRK11049 D-alanine/D-serine/gl 99.6 3.9E-13 8.5E-18 130.8 28.8 234 40-284 16-267 (469)
26 PRK11387 S-methylmethionine tr 99.6 1.8E-13 3.9E-18 133.4 26.3 237 41-288 11-266 (471)
27 PRK15049 L-asparagine permease 99.6 4.4E-13 9.5E-18 131.2 28.4 239 41-288 25-280 (499)
28 TIGR00905 2A0302 transporter, 99.6 3.6E-13 7.7E-18 131.3 27.3 238 43-286 6-256 (473)
29 TIGR00909 2A0306 amino acid tr 99.6 1.8E-13 3.8E-18 132.0 24.3 291 43-335 2-308 (429)
30 TIGR03810 arg_ornith_anti argi 99.6 1.5E-12 3.3E-17 126.7 28.8 239 44-288 1-254 (468)
31 PRK10836 lysine transporter; P 99.6 1.1E-12 2.4E-17 128.4 27.6 237 41-288 12-265 (489)
32 PRK10746 putative transport pr 99.6 1.8E-12 3.9E-17 125.8 28.6 283 41-335 7-313 (461)
33 PF03845 Spore_permease: Spore 99.6 1.8E-12 4E-17 119.9 27.4 284 45-340 1-296 (320)
34 PRK10580 proY putative proline 99.6 7.4E-12 1.6E-16 121.6 31.3 232 41-283 6-254 (457)
35 PRK10238 aromatic amino acid t 99.6 5E-12 1.1E-16 122.6 28.7 230 41-281 9-253 (456)
36 COG1113 AnsP Gamma-aminobutyra 99.6 4.4E-13 9.6E-18 124.0 19.1 317 39-366 8-357 (462)
37 KOG1287 Amino acid transporter 99.5 3.4E-13 7.4E-18 126.6 16.5 240 39-287 7-263 (479)
38 TIGR00908 2A0305 ethanolamine 99.5 6.9E-12 1.5E-16 121.4 26.1 230 41-281 4-244 (442)
39 PF13520 AA_permease_2: Amino 99.5 2.3E-12 5E-17 124.2 21.8 284 46-336 1-303 (426)
40 TIGR00913 2A0310 amino acid pe 99.5 9.4E-12 2E-16 121.7 25.9 229 43-282 1-251 (478)
41 PRK11357 frlA putative fructos 99.5 1.3E-11 2.8E-16 119.6 24.7 235 41-284 5-251 (445)
42 PRK10197 gamma-aminobutyrate t 99.5 1.6E-11 3.5E-16 118.7 24.8 270 55-336 3-296 (446)
43 TIGR00911 2A0308 L-type amino 99.5 5.8E-12 1.3E-16 123.7 22.0 243 39-287 37-294 (501)
44 COG0531 PotE Amino acid transp 99.4 1.1E-10 2.3E-15 113.9 24.2 246 40-289 8-262 (466)
45 KOG1286 Amino acid transporter 99.4 2.1E-11 4.5E-16 118.8 16.7 297 40-338 26-353 (554)
46 COG0833 LysP Amino acid transp 99.3 6.4E-10 1.4E-14 105.4 24.8 289 41-339 41-359 (541)
47 TIGR03428 ureacarb_perm permea 99.3 4.8E-09 1E-13 102.5 29.3 248 41-288 10-273 (475)
48 PRK15238 inner membrane transp 99.2 3.7E-08 8E-13 96.8 29.6 240 43-284 6-267 (496)
49 TIGR00907 2A0304 amino acid pe 99.2 2.3E-08 4.9E-13 98.0 27.1 238 42-282 10-271 (482)
50 KOG3832 Predicted amino acid t 99.1 8E-10 1.7E-14 91.0 12.2 213 46-259 12-303 (319)
51 PF00324 AA_permease: Amino ac 99.1 5E-10 1.1E-14 109.5 12.0 232 54-291 5-263 (478)
52 TIGR03813 put_Glu_GABA_T putat 99.1 2.4E-07 5.1E-12 90.6 29.4 238 45-288 2-254 (474)
53 TIGR00910 2A0307_GadC glutamat 99.1 1E-07 2.3E-12 93.6 25.7 231 43-281 3-247 (507)
54 COG3949 Uncharacterized membra 98.9 3.1E-07 6.7E-12 81.9 20.0 215 50-278 7-228 (349)
55 TIGR00800 ncs1 NCS1 nucleoside 98.4 0.00031 6.6E-09 68.1 27.1 293 45-339 13-330 (442)
56 COG1457 CodB Purine-cytosine p 98.4 0.00035 7.7E-09 66.2 25.3 213 111-338 85-303 (442)
57 TIGR02119 panF sodium/pantothe 98.4 0.0013 2.8E-08 64.4 30.5 237 38-286 34-293 (471)
58 COG0591 PutP Na+/proline sympo 98.3 0.0025 5.3E-08 62.6 29.6 155 36-202 30-190 (493)
59 PRK11375 allantoin permease; P 98.3 0.0018 3.8E-08 63.4 28.4 257 78-339 62-344 (484)
60 TIGR00813 sss transporter, SSS 98.3 0.0014 3.1E-08 62.8 27.2 149 43-203 2-152 (407)
61 PRK09442 panF sodium/panthothe 98.3 0.0027 5.9E-08 62.3 29.2 156 37-204 34-195 (483)
62 KOG1289 Amino acid transporter 98.2 0.0002 4.3E-09 68.6 19.1 247 40-291 44-315 (550)
63 PRK12488 acetate permease; Pro 98.2 0.0085 1.8E-07 59.7 31.4 153 38-203 61-216 (549)
64 TIGR02358 thia_cytX probable h 98.2 0.002 4.4E-08 61.2 25.7 268 49-338 8-278 (386)
65 TIGR00835 agcS amino acid carr 98.1 0.0059 1.3E-07 58.1 27.1 148 44-204 45-202 (425)
66 PF00474 SSF: Sodium:solute sy 98.1 0.0037 7.9E-08 59.9 25.3 149 43-203 5-156 (406)
67 PRK09395 actP acetate permease 97.9 0.029 6.3E-07 56.0 30.7 153 38-202 63-217 (551)
68 TIGR00796 livcs branched-chain 97.9 0.016 3.4E-07 54.6 25.2 269 53-338 2-302 (378)
69 PRK11017 codB cytosine permeas 97.8 0.02 4.3E-07 54.8 25.5 199 78-290 44-245 (404)
70 TIGR02711 symport_actP cation/ 97.7 0.061 1.3E-06 53.7 31.5 150 40-202 63-215 (549)
71 PF02133 Transp_cyt_pur: Perme 97.7 0.0028 6.1E-08 61.4 16.9 288 45-337 8-316 (440)
72 PRK15419 proline:sodium sympor 97.6 0.078 1.7E-06 52.3 30.6 155 38-203 34-196 (502)
73 TIGR03648 Na_symport_lg probab 97.6 0.11 2.3E-06 52.0 29.7 154 37-202 25-180 (552)
74 TIGR02121 Na_Pro_sym sodium/pr 97.5 0.13 2.7E-06 50.7 31.7 155 38-203 30-192 (487)
75 PF02554 CstA: Carbon starvati 97.5 0.0076 1.6E-07 55.5 15.6 105 46-150 52-157 (376)
76 COG1953 FUI1 Cytosine/uracil/t 97.3 0.16 3.5E-06 48.8 23.7 228 107-339 103-358 (497)
77 KOG1288 Amino acid transporter 97.3 0.0058 1.3E-07 60.0 13.2 269 65-338 88-404 (945)
78 KOG2083 Na+/K+ symporter [Inor 97.1 0.0021 4.6E-08 62.0 8.5 224 45-279 29-274 (643)
79 PRK10484 putative transporter; 97.1 0.38 8.3E-06 47.7 29.5 162 37-203 31-197 (523)
80 COG0733 Na+-dependent transpor 97.0 0.22 4.7E-06 47.3 20.5 287 46-336 9-335 (439)
81 PF00209 SNF: Sodium:neurotran 96.8 0.39 8.5E-06 47.7 22.2 162 178-339 190-381 (523)
82 COG1966 CstA Carbon starvation 96.6 0.11 2.4E-06 50.3 15.5 105 46-150 52-157 (575)
83 PF01235 Na_Ala_symp: Sodium:a 96.4 0.92 2E-05 43.2 22.7 150 40-202 13-173 (416)
84 PRK15015 carbon starvation pro 96.3 0.064 1.4E-06 53.0 12.3 103 47-149 84-187 (701)
85 TIGR00796 livcs branched-chain 95.6 0.16 3.5E-06 47.9 11.4 83 104-197 252-334 (378)
86 PF05525 Branch_AA_trans: Bran 95.6 2.3 4.9E-05 40.8 20.6 268 47-337 4-307 (427)
87 PHA02764 hypothetical protein; 95.5 0.83 1.8E-05 41.4 14.7 91 43-134 11-104 (399)
88 PF05525 Branch_AA_trans: Bran 95.4 0.14 3.1E-06 48.8 10.3 82 105-197 259-340 (427)
89 COG1115 AlsT Na+/alanine sympo 95.2 2.9 6.4E-05 39.9 23.9 298 41-358 58-399 (452)
90 COG4147 DhlC Predicted symport 95.0 3.6 7.8E-05 39.5 17.8 174 102-286 99-294 (529)
91 COG1114 BrnQ Branched-chain am 93.5 1.7 3.6E-05 41.0 12.4 81 105-196 261-341 (431)
92 PRK15433 branched-chain amino 93.1 1.1 2.3E-05 43.1 10.7 77 109-197 267-343 (439)
93 COG1914 MntH Mn2+ and Fe2+ tra 92.9 9.1 0.0002 36.7 23.6 76 107-193 77-152 (416)
94 PF02028 BCCT: BCCT family tra 92.7 11 0.00023 37.0 23.1 163 43-209 72-261 (485)
95 PRK00701 manganese transport p 92.1 12 0.00026 36.2 23.8 46 106-151 93-138 (439)
96 PLN02680 carbon-monoxide oxyge 91.8 6.2 0.00013 34.3 12.8 108 215-328 34-143 (232)
97 KOG3660 Sodium-neurotransmitte 91.4 18 0.00039 36.7 17.9 53 46-98 38-92 (629)
98 KOG2082 K+/Cl- cotransporter K 91.4 1.6 3.6E-05 44.0 9.8 104 46-150 115-222 (1075)
99 cd08762 Cyt_b561_CYBASC3 Verte 90.3 6.9 0.00015 32.6 11.2 108 215-328 24-134 (179)
100 PRK15433 branched-chain amino 88.9 23 0.0005 34.2 21.3 265 47-337 9-311 (439)
101 PF01566 Nramp: Natural resist 88.5 22 0.00047 33.4 24.7 82 105-197 40-123 (358)
102 KOG2466 Uridine permease/thiam 86.3 34 0.00074 33.2 15.2 291 40-339 50-378 (572)
103 cd08764 Cyt_b561_CG1275_like N 84.9 23 0.00049 30.6 11.5 110 215-328 13-123 (214)
104 KOG2349 Na+:iodide/myo-inosito 84.3 1.2 2.7E-05 44.0 4.1 239 38-289 39-303 (585)
105 KOG1289 Amino acid transporter 82.6 28 0.00061 34.3 12.3 50 107-156 325-374 (550)
106 PLN02810 carbon-monoxide oxyge 81.3 29 0.00064 30.1 10.8 107 215-328 34-143 (231)
107 PRK09950 putative transporter; 79.9 66 0.0014 31.8 23.4 164 43-209 81-271 (506)
108 PRK09928 choline transport pro 79.2 80 0.0017 32.4 23.0 162 45-209 92-278 (679)
109 KOG3659 Sodium-neurotransmitte 79.0 74 0.0016 31.9 18.1 86 46-133 82-173 (629)
110 TIGR00907 2A0304 amino acid pe 77.4 70 0.0015 31.3 13.9 47 108-154 290-337 (482)
111 cd08765 Cyt_b561_CYBRD1 Verteb 76.3 17 0.00037 29.5 7.5 106 217-328 3-111 (153)
112 KOG1619 Cytochrome b [Energy p 73.6 50 0.0011 28.8 10.0 107 215-328 43-152 (245)
113 cd08766 Cyt_b561_ACYB-1_like P 72.3 49 0.0011 26.6 9.4 101 222-328 4-104 (144)
114 PF11239 DUF3040: Protein of u 70.6 25 0.00055 25.1 6.6 22 8-29 3-24 (82)
115 PRK03356 L-carnitine/gamma-but 65.1 1.5E+02 0.0032 29.4 23.0 160 43-205 83-270 (504)
116 TIGR00909 2A0306 amino acid tr 59.7 1.7E+02 0.0036 28.1 16.3 48 107-154 264-311 (429)
117 TIGR00842 bcct choline/carniti 58.6 1.9E+02 0.004 28.3 21.0 51 102-152 115-169 (453)
118 PF03169 OPT: OPT oligopeptide 55.0 98 0.0021 31.6 10.0 60 59-120 366-428 (624)
119 COG1114 BrnQ Branched-chain am 54.4 2.1E+02 0.0044 27.5 19.8 75 47-127 6-84 (431)
120 TIGR00905 2A0302 transporter, 51.4 2.4E+02 0.0053 27.5 14.6 46 109-154 270-315 (473)
121 PLN02351 cytochromes b561 fami 51.0 1.7E+02 0.0038 25.7 12.0 95 227-329 52-147 (242)
122 PHA02680 ORF090 IMV phosphoryl 48.1 45 0.00097 24.0 4.3 65 234-299 16-81 (91)
123 COG5336 Uncharacterized protei 45.0 1.1E+02 0.0023 23.2 6.0 36 54-89 52-87 (116)
124 TIGR01197 nramp NRAMP (natural 44.6 2.9E+02 0.0062 26.4 27.2 47 105-151 62-108 (390)
125 PRK13183 psbN photosystem II r 44.3 19 0.00041 22.4 1.8 29 262-290 5-33 (46)
126 PF02468 PsbN: Photosystem II 43.8 18 0.0004 22.2 1.6 27 264-290 4-30 (43)
127 cd08763 Cyt_b561_CYB561 Verteb 43.7 1.1E+02 0.0024 24.6 6.6 97 225-328 6-104 (143)
128 TIGR00906 2A0303 cationic amin 42.3 3.7E+02 0.0081 27.0 15.5 47 108-154 300-346 (557)
129 CHL00020 psbN photosystem II p 39.5 17 0.00038 22.3 1.1 27 264-290 4-30 (43)
130 KOG1287 Amino acid transporter 38.9 1.7E+02 0.0037 28.7 8.2 44 109-153 275-318 (479)
131 TIGR03810 arg_ornith_anti argi 38.1 3.9E+02 0.0084 26.0 11.5 46 109-154 266-311 (468)
132 CHL00182 tatC Sec-independent 38.1 2.6E+02 0.0056 24.8 8.7 41 300-340 73-113 (249)
133 PF13491 DUF4117: Domain of un 36.2 2.4E+02 0.0051 22.9 9.1 106 259-367 1-113 (171)
134 COG1292 BetT Choline-glycine b 35.5 4.6E+02 0.01 26.1 20.3 109 46-154 88-221 (537)
135 KOG2174 Leptin receptor gene-r 33.5 1.5E+02 0.0033 23.0 5.5 48 52-99 69-119 (131)
136 PF04144 SCAMP: SCAMP family; 32.9 2.9E+02 0.0063 23.0 8.1 54 319-372 77-130 (177)
137 PF04133 Vps55: Vacuolar prote 32.9 2.3E+02 0.0051 21.9 8.7 46 52-97 63-110 (120)
138 PF15225 IL32: Interleukin 32 32.5 54 0.0012 23.5 2.8 27 46-72 55-81 (104)
139 PF00902 TatC: Sec-independent 29.1 2.8E+02 0.0061 23.8 7.4 65 300-364 56-120 (215)
140 KOG1277 Endosomal membrane pro 28.9 5.6E+02 0.012 25.1 11.9 63 223-285 515-577 (593)
141 PF08627 CRT-like: CRT-like; 28.2 40 0.00088 26.2 1.7 12 2-13 1-12 (130)
142 PRK05415 hypothetical protein; 26.5 4.3E+02 0.0093 24.7 8.3 47 51-97 73-119 (341)
143 PRK10644 arginine:agmatin anti 25.3 6.1E+02 0.013 24.3 14.2 47 106-152 259-305 (445)
144 PRK11021 putative transporter; 25.2 5.9E+02 0.013 24.1 11.7 48 107-154 246-293 (410)
145 KOG2736 Presenilin [Signal tra 24.8 2.8E+02 0.006 26.1 6.6 52 48-99 343-394 (406)
146 PF11085 YqhR: Conserved membr 24.8 4.1E+02 0.0088 22.1 8.4 60 58-130 47-109 (173)
147 PRK10921 twin-arginine protein 23.8 5.2E+02 0.011 23.0 8.2 63 301-363 64-126 (258)
148 KOG2466 Uridine permease/thiam 23.5 6.2E+02 0.013 25.1 8.8 157 119-281 341-514 (572)
149 PF09716 ETRAMP: Malarial earl 22.3 1.1E+02 0.0024 22.0 3.0 40 250-289 41-80 (84)
150 PF12666 PrgI: PrgI family pro 21.9 3.1E+02 0.0068 19.7 6.4 27 44-70 15-41 (93)
151 TIGR03750 conj_TIGR03750 conju 21.8 3.7E+02 0.008 20.5 8.7 67 44-110 16-84 (111)
152 PF03857 Colicin_im: Colicin i 21.7 4.1E+02 0.009 21.1 6.3 75 254-329 53-129 (138)
153 PF04835 Pox_A9: A9 protein co 21.6 1.8E+02 0.0038 18.9 3.4 26 267-292 27-52 (54)
154 TIGR00945 tatC Twin arginine t 21.4 5.3E+02 0.011 22.2 7.9 63 300-362 52-114 (215)
155 PF01616 Orbi_NS3: Orbivirus N 21.0 3E+02 0.0066 23.3 5.7 77 242-324 70-146 (195)
156 PRK10655 potE putrescine trans 20.9 7.4E+02 0.016 23.7 13.1 47 107-153 258-304 (438)
157 PF13520 AA_permease_2: Amino 20.6 7.3E+02 0.016 23.5 10.7 46 109-154 260-305 (426)
No 1
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-50 Score=373.65 Aligned_cols=325 Identities=23% Similarity=0.357 Sum_probs=285.0
Q ss_pred CCCCCHHHHHHHHHHHHHhHhhhHHHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhh-----hCCCCCChHHHHHHh
Q 017309 43 AHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFE-----SKEGITTYPDIGEAA 116 (373)
Q Consensus 43 ~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~y~~l~~~~ 116 (373)
++..|..++..|+.|.++|+|+|++|++|+++|++ |.+..+++++++.||++.+++|.. +.....+|.+.++.+
T Consensus 44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a 123 (449)
T KOG1304|consen 44 EHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESA 123 (449)
T ss_pred CCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHH
Confidence 44689999999999999999999999999999999 999999999999999999999963 123346777776654
Q ss_pred ----------cCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccC
Q 017309 117 ----------FGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRD 186 (373)
Q Consensus 117 ----------~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~ 186 (373)
+||++|.+++..+.++++|.|++|+++++++++++.+... .... +...++++.....++++++|+
T Consensus 124 ~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~----~~~~-s~~~~i~~~~~~~lll~~Ir~ 198 (449)
T KOG1304|consen 124 MEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHS----PGVL-SVRLYILIQLPPLLLLNLIRN 198 (449)
T ss_pred HcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccC----CCCc-cHHHHHHHHHHHHHHHHHHHh
Confidence 4889999999999999999999999999999999987322 1122 356788888999999999999
Q ss_pred CchhhHHHHHHHHHHHHHHHhhheeccccCcccCCCCccccccchhhhhhhHhhhcccceehhhHhhhccCchhhH---H
Q 017309 187 LRVISYLSATGVVATILIVLCVLFLGTIEGIGFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFT---K 263 (373)
Q Consensus 187 l~~l~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~---~ 263 (373)
++.++.+|.++.++.++.++.+.++...+.++.++.+...++++++..+|+.+|||+|+.++.|++++||+|++++ +
T Consensus 199 Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~~F~g~~g 278 (449)
T KOG1304|consen 199 LKILSPFSLFANVFILVGLAIIMYYLVQDLPPTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQKFPGPFG 278 (449)
T ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHhccCCccccccccchhhhHHHHHHHHHHhccceEEEehhhcccChhhcCCccc
Confidence 9999999999999988887777777766666666666667789999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhcCCCchHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHcCCC--CC
Q 017309 264 ALITCFALCVLIYGGVAVMGFLMFGQGTLSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAG--IS 341 (373)
Q Consensus 264 ~i~~s~~~~~~~Y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~--~~ 341 (373)
++..++.+++++|+.+|++||++||+++++.|++|+|+ ++.....++++++.+++|||+|++|..+.+|+.+.++ +.
T Consensus 279 VLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~k~~~~ 357 (449)
T KOG1304|consen 279 VLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ-EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRKKFSEN 357 (449)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc-cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHHhcCcc
Confidence 99999999999999999999999999999999999998 7777789999999999999999999999999876554 23
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhcCC----cccCCC
Q 017309 342 NNYWCFILLRTALVFSSVCAAFLLPF----FSKFGT 373 (373)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~iA~~vp~----~~~vg~ 373 (373)
+.++..+.+|..+++++..+|+.+|+ +++|||
T Consensus 358 ~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs 393 (449)
T KOG1304|consen 358 RKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGS 393 (449)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHH
Confidence 35678899999999999999999995 455554
No 2
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=1.9e-48 Score=375.07 Aligned_cols=329 Identities=17% Similarity=0.337 Sum_probs=271.7
Q ss_pred CCCCHHHHHHHHHHHHHhHhhhHHHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcCcchh
Q 017309 44 HGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGR 122 (373)
Q Consensus 44 ~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~ 122 (373)
+..|..++.+|++|+++|+|+|++|++|+++||+ |++++++++.++.|+.+++.++++ +.+.++|+|++++++||+++
T Consensus 58 ~~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~-~~~~~sY~~la~~~~G~~g~ 136 (467)
T PTZ00206 58 PPGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAAD-KTNIRTYEGVARVLLGPWGS 136 (467)
T ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCCCHHHHHHHHhCHHHH
Confidence 3478899999999999999999999999999999 999999999999999999999976 56778999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCC-CCCcccCchhHHHHHHHHHHHhhhcccCCchhhHHHHHHHHHH
Q 017309 123 LLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLD-WPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVAT 201 (373)
Q Consensus 123 ~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~ 201 (373)
+++++++.+.++|.|++|+++.+|.++.+++..... ........+..+.++..++++|++++|+++.++++|.+++.++
T Consensus 137 ~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~~~i 216 (467)
T PTZ00206 137 YYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTIAVSFM 216 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHHHHHHHH
Confidence 999999999999999999999999999887643211 1111111233344556678999999999999999999999887
Q ss_pred HHHHHhhheeccccCcc--cCC---------CCccccc-cchhhhhhhHhhhcccceehhhHhhhccCc--hhhHHHHHH
Q 017309 202 ILIVLCVLFLGTIEGIG--FHP---------TGQVVKW-SGMPFAIGIYGFCYSGHSVFPNIYQSMADK--TKFTKALIT 267 (373)
Q Consensus 202 ~~~~~~i~~~~~~~~~~--~~~---------~~~~~~~-~~~~~~~~~~~faf~~~~~~~~i~~~m~~p--~~~~~~i~~ 267 (373)
++..+.+++....++.+ .++ +.+.++. .+++.++|+++|||.||.+++++++||||| +|+.+++..
T Consensus 217 ~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~~~v~~~ 296 (467)
T PTZ00206 217 VYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKFVLASTI 296 (467)
T ss_pred HHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHHHHHHHH
Confidence 77666665544322211 100 0112222 357889999999999999999999999986 488899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCchhhhhhcC-CCchHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHcCCC-CCcchh
Q 017309 268 CFALCVLIYGGVAVMGFLMFGQGTLSQITLNM-PPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAG-ISNNYW 345 (373)
Q Consensus 268 s~~~~~~~Y~~~g~~gy~~fg~~~~~~il~n~-~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~-~~~~~~ 345 (373)
++.+++++|..+|++||+.||++++++++.|+ |.++....++++++++.++++||++.+|+|+.+++.+.++ ++.+.+
T Consensus 297 s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~~~~~~~~~~ 376 (467)
T PTZ00206 297 AMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNEPAIMVGFVGVLVKLFVSYALLGMACRNALYDVIGWDARKVAFW 376 (467)
T ss_pred HHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCCchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhCCCcccCchh
Confidence 99999999999999999999999999999999 5677777888999999999999999999999999887443 334556
Q ss_pred hHHHHHHHHHHHHHHHHHhcCC----cccCCC
Q 017309 346 CFILLRTALVFSSVCAAFLLPF----FSKFGT 373 (373)
Q Consensus 346 ~~~~~~~~~~~~~~~iA~~vp~----~~~vg~ 373 (373)
++...+..+++++.++|+.+|+ ++++||
T Consensus 377 ~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa 408 (467)
T PTZ00206 377 KHCIAVVTLSVVMLLCGLFIPKINTVLGFAGS 408 (467)
T ss_pred hHHHHHHHHHHHHHHHHhccCCHHHhhhhhhH
Confidence 7777788888889999999994 666664
No 3
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=4.3e-46 Score=349.20 Aligned_cols=326 Identities=37% Similarity=0.672 Sum_probs=285.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhHhhhHHHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCC-----ChHHHHHH
Q 017309 42 IAHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGIT-----TYPDIGEA 115 (373)
Q Consensus 42 ~~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~y~~l~~~ 115 (373)
.+++.||+++.++.++.++|.|+|++||+++|.||+ |+++++..++++.||..+|.+|.+.++... +|.|++++
T Consensus 34 ~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~~~ 113 (437)
T KOG1303|consen 34 PSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLGQA 113 (437)
T ss_pred cCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHHHH
Confidence 355699999999999999999999999999999999 899999999999999999999987665444 59999999
Q ss_pred hcCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhhHHHH
Q 017309 116 AFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSA 195 (373)
Q Consensus 116 ~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~ 195 (373)
+||+++++++.+++.+..++.++.|.+..+|++..+.+....+.. ..+ ...+.++..++.+|++++||++.++++|.
T Consensus 114 afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~--~l~-~~~f~iif~~i~~~~s~lp~~~~l~~~S~ 190 (437)
T KOG1303|consen 114 AFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN--SLD-KQYFIIIFGLIVLPLSQLPNFHSLSYLSL 190 (437)
T ss_pred HhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc--ccc-ceehhhhHHHHHHHHHHCCCcchhHHHHH
Confidence 999999999999999999999999999999999999887654321 233 45688999999999999999999999999
Q ss_pred HHHHHHHHHHHhhheeccccCcccCCC-Cccccc--cch-hhhhhhHhhhcccceehhhHhhhccCchhhHHHHHHHHHH
Q 017309 196 TGVVATILIVLCVLFLGTIEGIGFHPT-GQVVKW--SGM-PFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITCFAL 271 (373)
Q Consensus 196 ~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~--~~~-~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~i~~s~~~ 271 (373)
.+.+..+.+....++.+..++.+...+ .+..+. .+. +.++|++.|+|.||.++|+|++.||+|.+++|++..++.+
T Consensus 191 ~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~f~a~g~iaFaf~gH~v~peIq~tMk~p~~f~~~~lis~~~ 270 (437)
T KOG1303|consen 191 VGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPTVFTALGIIAFAYGGHAVLPEIQHTMKSPPKFKKALLISYII 270 (437)
T ss_pred HHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCcchhhhhhheeeeecCCeeeeehHhhcCCchhhhhHHHHHHHH
Confidence 999998888877777776665444222 222222 222 6999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCchhhhhhcCCCchHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHcCCCCC----cchhhH
Q 017309 272 CVLIYGGVAVMGFLMFGQGTLSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGIS----NNYWCF 347 (373)
Q Consensus 272 ~~~~Y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~----~~~~~~ 347 (373)
++++|+.+++.||++|||++.++++.|+++..+....+++++.++++.+|.....|+.+.+|+.....+. .....|
T Consensus 271 ~~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~~~~~~~~~~~~~R 350 (437)
T KOG1303|consen 271 VTFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIALANILIVLHLIGSYQIYAQPLFDVVEKLIGVKHPDFKKRSLVLR 350 (437)
T ss_pred HHHHHHHHHHhhhhhhccccchhhhhcccCchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHhccCCcccccccccee
Confidence 9999999999999999999999999999755566667889999999999999999999999998865433 355689
Q ss_pred HHHHHHHHHHHHHHHHhcCCccc
Q 017309 348 ILLRTALVFSSVCAAFLLPFFSK 370 (373)
Q Consensus 348 ~~~~~~~~~~~~~iA~~vp~~~~ 370 (373)
.+.|+.+++.++++|+.+|+||-
T Consensus 351 ~~~Rt~~v~~~~~vA~~~PfFg~ 373 (437)
T KOG1303|consen 351 LLVRTFFVAVTTFVALSFPFFGD 373 (437)
T ss_pred eehhhHHHHHHHHHHHhccccHh
Confidence 99999999999999999998764
No 4
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=3.8e-46 Score=357.00 Aligned_cols=326 Identities=31% Similarity=0.537 Sum_probs=280.4
Q ss_pred CCCCHHHHHHHHHHHHHhHhhhHHHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhh---CCCCCChHHHHHHhcCc
Q 017309 44 HGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFES---KEGITTYPDIGEAAFGK 119 (373)
Q Consensus 44 ~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~---~~~~~~y~~l~~~~~G~ 119 (373)
+|.|+++++++++|+++|+|+|++|++++++||+ |++++++++.++.++.+++.++.++ +++..+|+|++++.+||
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G~ 80 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAFGP 80 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence 4789999999999999999999999999999999 9999999999999999999999764 35889999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhhHHHHHHHH
Q 017309 120 YGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVV 199 (373)
Q Consensus 120 ~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~ 199 (373)
++++++++++.+.++|.+++|.++.+|.+.++++....+ ...++..+.++..++++|++++|+++.+++.|.++.+
T Consensus 81 ~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~----~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~ 156 (409)
T PF01490_consen 81 KGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGD----LFISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGLF 156 (409)
T ss_pred cccccccchheeccccccceeEEEeeeeeeccccccccc----ccccccccccccccccccccccchhhHHHHHhhhhhh
Confidence 999999999999999999999999999999998875422 1223556677888999999999999999999999988
Q ss_pred HHHHHHHhhheecccc----CcccCCC--CccccccchhhhhhhHhhhcccceehhhHhhhccCchhhH---HHHHHHHH
Q 017309 200 ATILIVLCVLFLGTIE----GIGFHPT--GQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFT---KALITCFA 270 (373)
Q Consensus 200 ~~~~~~~~i~~~~~~~----~~~~~~~--~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~---~~i~~s~~ 270 (373)
+.+.......+..... +.+.+.. ....++.+++.++++++|||.||.+++++.+|||+|+|++ +++..++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~s~~ 236 (409)
T PF01490_consen 157 SIFYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMKKVLSISMI 236 (409)
T ss_pred ccceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccccccceeeeehhh
Confidence 8775422222211111 1111111 1234567899999999999999999999999999999877 99999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCchhhhhhcCCCchHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHcCC----------CC
Q 017309 271 LCVLIYGGVAVMGFLMFGQGTLSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPA----------GI 340 (373)
Q Consensus 271 ~~~~~Y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~----------~~ 340 (373)
+++++|..+|+.||++||+++++|++.|+|+++....++++++.++++.+||++.+|.|+.+++.+.+ ++
T Consensus 237 ~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~ 316 (409)
T PF01490_consen 237 ICFIIYLLFGIFGYLAFGDSVQGNILLNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRDSPKNT 316 (409)
T ss_pred hhhHHhhhhhhcccceeeeeecchhhhcCCCcccccccccccchhhhhhccccccchhHhhhhhheeccccccccccccc
Confidence 99999999999999999999999999999998888889999999999999999999999999998854 23
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHhcCC----cccCCC
Q 017309 341 SNNYWCFILLRTALVFSSVCAAFLLPF----FSKFGT 373 (373)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~iA~~vp~----~~~vg~ 373 (373)
...+++|...|+.+++.+.++|+.+|+ ++++||
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga 353 (409)
T PF01490_consen 317 PSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGA 353 (409)
T ss_pred cccceeeeeeecchhhhhhhhhhhccchhhhhcccch
Confidence 455678999999999999999999995 555553
No 5
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=9.1e-40 Score=313.49 Aligned_cols=315 Identities=18% Similarity=0.224 Sum_probs=255.5
Q ss_pred CCCCHHHHHHHHHHHHHhHhhhHHHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhh----hCCC-C-------CChH
Q 017309 44 HGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFE----SKEG-I-------TTYP 110 (373)
Q Consensus 44 ~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~----~~~~-~-------~~y~ 110 (373)
++.+..++.+++++..+|.|+|+||++|+++||+ |++.+++.++++.||.+++.++.. ++++ . .+|.
T Consensus 44 ~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~~ 123 (473)
T PLN03074 44 HGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQWF 123 (473)
T ss_pred CCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHHH
Confidence 4688999999999999999999999999999999 999999999999999999987642 1221 1 2678
Q ss_pred HHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchh
Q 017309 111 DIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVI 190 (373)
Q Consensus 111 ~l~~~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l 190 (373)
|+++..+||+++.+..+...+++++.|+.|.+..++.+..+-.. .+ .+.|.++..++.+|++++|+++.+
T Consensus 124 e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~~---------~~-~~~~~~i~~~v~~~~~~i~sl~~l 193 (473)
T PLN03074 124 EVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYINDN---------LD-KRTWTYIFGACCATTVFIPSFHNY 193 (473)
T ss_pred HHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCCC---------cC-CCeEEeehHHHHHHHHHccCHHHH
Confidence 89999999999999999999999999999999888877765321 12 234556777888889999999999
Q ss_pred hHHHHHHHHHHHHHHHhhheeccccC--cccCCCCccccccchhhhhhhHhhhcccceehhhHhhhccCchhhHHHHHHH
Q 017309 191 SYLSATGVVATILIVLCVLFLGTIEG--IGFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITC 268 (373)
Q Consensus 191 ~~~s~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~i~~s 268 (373)
+++|.+++.++++..+.++......+ ++.+.. .+.++..++.++++++|+|+||.++|+++++||||+|++++...+
T Consensus 194 ~~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~~-~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P~~F~~~~~l~ 272 (473)
T PLN03074 194 RIWSFLGLLMTTYTAWYMTIAALSHGQVEGVKHS-GPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLAA 272 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC-CchhHHHHHHHHHHHHHHhcccccHHHHHHhccChhcccchHHHH
Confidence 99999998876544333322222111 111111 123444566777889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCchh--hhhhcCCCchHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHcCCCCCcchhh
Q 017309 269 FALCVLIYGGVAVMGFLMFGQGTLS--QITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNYWC 346 (373)
Q Consensus 269 ~~~~~~~Y~~~g~~gy~~fg~~~~~--~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~~~~~~ 346 (373)
...++.+|+.+|+.||+.|||++.+ +.+.|+|++.. ..+++++++++.+.+||++++|+.+.+|+.++.++.+....
T Consensus 273 ~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~~~-~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~~~~~~k~~~~ 351 (473)
T PLN03074 273 TLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRSGW-RDAAVILMLIHQFITFGFACTPLYFVWEKAIGVHDTKSICL 351 (473)
T ss_pred HHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCchH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcccccccHHH
Confidence 9999999999999999999998764 46667886654 46788999999999999999999999999876544455678
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccc
Q 017309 347 FILLRTALVFSSVCAAFLLPFFSK 370 (373)
Q Consensus 347 ~~~~~~~~~~~~~~iA~~vp~~~~ 370 (373)
|+.+|+.+++.++++|+.+|+|+.
T Consensus 352 r~~~R~~lv~~~~~iA~~IP~fg~ 375 (473)
T PLN03074 352 RALARLPVVVPIWFLAIIFPFFGP 375 (473)
T ss_pred HHHHHHHHHHHHHHHHHHccchHH
Confidence 899999999999999999997664
No 6
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=6.5e-39 Score=299.41 Aligned_cols=329 Identities=24% Similarity=0.382 Sum_probs=277.0
Q ss_pred CCCCCHHHHHHHHHHHHHhHhhhHHHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcCcch
Q 017309 43 AHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYG 121 (373)
Q Consensus 43 ~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~ 121 (373)
+++.|...+++++.|+++|+|++++|++|++.|.+ |++++..+++++.++.+++.+++. +.++++|++++++.+|+.+
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~-~~~~~ty~~l~~~~~g~~g 81 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAK-KSGERTYSSLGDLIFGKLG 81 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhh-hcCCCCHHHHHHHHcCCCc
Confidence 45678899999999999999999999999999998 999999999999999999999976 5555599999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCC-CCCc-ccCchhHHHHHHHHHHHhhhcccCCchhhHHHHHHHH
Q 017309 122 RLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLD-WPGF-QLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVV 199 (373)
Q Consensus 122 ~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~-~~~~-~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~ 199 (373)
+....+.......| +++|.++.+|.+..+......+ +.+. +.+++..+.+....++.|+++.|+++.+++.|.+++.
T Consensus 82 ~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~tS~~s~~ 160 (411)
T KOG1305|consen 82 KVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLKNLDSLKYTSALSLA 160 (411)
T ss_pred eeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 77777777777777 7999999999999766544322 1121 2233333688899999999999999999999999999
Q ss_pred HHHHHHHhhheeccccCc---ccCC-CCccccccchhhhhhhHhhhcccceehhhHhhhccCch--hhHHHHHHHHHHHH
Q 017309 200 ATILIVLCVLFLGTIEGI---GFHP-TGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT--KFTKALITCFALCV 273 (373)
Q Consensus 200 ~~~~~~~~i~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~--~~~~~i~~s~~~~~ 273 (373)
+++...+.+++.....+. +... .+....++++..++++++|||.||++..++++|||||+ ++.++...+...+.
T Consensus 161 ~~~~fv~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~v~~~~~~~~~ 240 (411)
T KOG1305|consen 161 SVVYFVVLVVYKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQRVSNIAIILAT 240 (411)
T ss_pred HHHHHHHHHHHHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHHHHHHHHHHHH
Confidence 998888777776665332 1111 11122225899999999999999999999999999997 69999999999999
Q ss_pred HHHHHHHHHHHHHhcCCchhhhhhcCCCchHH------HHHHHHHHHHHHHHhhhhhhchhHHHHHHHcCCCC----Ccc
Q 017309 274 LIYGGVAVMGFLMFGQGTLSQITLNMPPHAFA------SKVAVWTTVINPFTKYALLMNPLARSIEELLPAGI----SNN 343 (373)
Q Consensus 274 ~~Y~~~g~~gy~~fg~~~~~~il~n~~~~~~~------~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~----~~~ 343 (373)
.+|...|+.||++||+++.+|++.++++.+.. ....|..+.++.+.++|+..+|+|..+++...++. .++
T Consensus 241 ~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~~~~~~~~~~~s 320 (411)
T KOG1305|consen 241 LIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELLFPYQPGLTSFS 320 (411)
T ss_pred HHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcccCCCCCCcc
Confidence 99999999999999999999999999877554 46789999999999999999999999988765442 367
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcC----CcccCCC
Q 017309 344 YWCFILLRTALVFSSVCAAFLLP----FFSKFGT 373 (373)
Q Consensus 344 ~~~~~~~~~~~~~~~~~iA~~vp----~~~~vg~ 373 (373)
++|+.+++..++..+.+.|+.+| .++++||
T Consensus 321 ~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGA 354 (411)
T KOG1305|consen 321 GKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGA 354 (411)
T ss_pred ceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhh
Confidence 78999999999999999999999 4666665
No 7
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=7e-37 Score=266.70 Aligned_cols=319 Identities=24% Similarity=0.382 Sum_probs=273.7
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhHhhhHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCC--------CCCChHH
Q 017309 40 LPIAHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKE--------GITTYPD 111 (373)
Q Consensus 40 ~~~~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~g~i~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~y~~ 111 (373)
.+.+.|++.+|+.+|..|++-|.=+++||+++...||.++..++.++.++.|+..++++|.- ++ .+++|.+
T Consensus 111 Ge~~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw~i~amvg~A~vCcyTGk~Li~CLY-E~~~dGevVrvRdsYva 189 (524)
T KOG4303|consen 111 GEASEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYWSIGAMVGVAYVCCYTGKLLIECLY-ENGEDGEVVRVRDSYVA 189 (524)
T ss_pred CCCCCccHHHHHhhhhhhhhheeeEeccceeeeEcchhHHHHHHhhhhhhhccchhhhhhhc-cCCCCCcEEEeehhHHH
Confidence 44557899999999999999999999999999999999999999999999999999999963 32 2479999
Q ss_pred HHHHhcCcc-hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchh
Q 017309 112 IGEAAFGKY-GRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVI 190 (373)
Q Consensus 112 l~~~~~G~~-~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l 190 (373)
+++.+++|. |+..+.+.+++.....|+.|.++.++.++.-.+.... + ..-|.++..+.++|++++|+++-.
T Consensus 190 IA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~sv-------d-~~sWm~i~~a~LLpc~FLk~Lk~V 261 (524)
T KOG4303|consen 190 IADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGLSV-------D-KASWMMITSASLLPCSFLKDLKIV 261 (524)
T ss_pred HHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCCCc-------c-ccchhhhhhHHHhhhHHHHHHHHH
Confidence 999999887 6588889999999999999999999999998875432 2 345778899999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhheec--cccCcccCCCCccccccchhhhhhhHhhhcccceehhhHhhhccCchhhHHHHHHH
Q 017309 191 SYLSATGVVATILIVLCVLFLG--TIEGIGFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITC 268 (373)
Q Consensus 191 ~~~s~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~i~~s 268 (373)
+++|.++.++-+++=+.++.+. ...++.|+.-....|..+++..+|++.|+|..|..+|.+...|+||+++.-.+-++
T Consensus 262 S~lSf~ct~sH~viN~i~v~YCLs~~~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM~~ps~Fn~Ml~Ws 341 (524)
T KOG4303|consen 262 SRLSFFCTISHLVINLIMVLYCLSFVSDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNMKNPSQFNVMLKWS 341 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccceeEEEEEEcccCceEEEEEEEeeeceeeccccccccCChhHheeeeehH
Confidence 9999888877665554444333 34566776666677888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCchhhhhhcCCCchHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHcCCC---------
Q 017309 269 FALCVLIYGGVAVMGFLMFGQGTLSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAG--------- 339 (373)
Q Consensus 269 ~~~~~~~Y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~--------- 339 (373)
.+...++-..+|.+||++|++++++.|++|+|+...- .+.++++++..++|||+-++.+.+.+|+-+..+
T Consensus 342 HIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~qsfk-~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~p~t~Fpsc 420 (524)
T KOG4303|consen 342 HIAAAVFKVVFGMLGFLTFGELTQEVITNNLPNQSFK-ILVNLFLVVKALLSYPLPFYAAVELLENNLFLGYPQTPFPSC 420 (524)
T ss_pred HHHHHHHHHHHHHheeeeechhhHHHHhcCCCccchh-hhhhHHHHHHHHHcCCchHHHHHHHHHHhhhcCCCCCCCcee
Confidence 9999999999999999999999999999999965554 467888999999999999999999999766432
Q ss_pred ---CCcchhhHHHHHHHHHHHHHHHHHhcCCc
Q 017309 340 ---ISNNYWCFILLRTALVFSSVCAAFLLPFF 368 (373)
Q Consensus 340 ---~~~~~~~~~~~~~~~~~~~~~iA~~vp~~ 368 (373)
+..-+-..+-+|..+++++.+.|+++|+|
T Consensus 421 ys~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf 452 (524)
T KOG4303|consen 421 YSPDGSLKEWGLTLRIILVVFTLLMAISVPHF 452 (524)
T ss_pred eCCCcchhhheeeeeeHHHHHHHHHHHHhHHH
Confidence 11112234678999999999999999964
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.97 E-value=3.4e-29 Score=237.19 Aligned_cols=283 Identities=20% Similarity=0.229 Sum_probs=231.7
Q ss_pred CCCCCHHHHHHHHHHHHHhHhhhHHHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCC-CChHHHHHHhcCcc
Q 017309 43 AHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGI-TTYPDIGEAAFGKY 120 (373)
Q Consensus 43 ~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~-~~y~~l~~~~~G~~ 120 (373)
+.+.+..+.++++.++++|+|+|++|++++..|+. +++++++.+..++++.+++.|+..+.++. .++.+++++.+||+
T Consensus 6 ~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~G~~ 85 (415)
T COG0814 6 KKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDYLGKK 85 (415)
T ss_pred cCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHhCcc
Confidence 34577799999999999999999999999999999 99999999999999999999998766666 49999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhhHHHHHHHHH
Q 017309 121 GRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVA 200 (373)
Q Consensus 121 ~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~ 200 (373)
++++.++.+.+.+++.+.+|.+..++.+++.+++.... +...+....++...++.+++..++...++..+.+....
T Consensus 86 ~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~----~~~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~~ 161 (415)
T COG0814 86 GGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGL----NPLPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFGK 161 (415)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhccc----CCcchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998864321 10235667777788888899999999999999988877
Q ss_pred HHHHHHhhheeccccCccc-CC-CCc-cccccchhhhhhhHhhhcccceehhhHhhhccCch-h-hHHHHHHHHHHHHHH
Q 017309 201 TILIVLCVLFLGTIEGIGF-HP-TGQ-VVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-K-FTKALITCFALCVLI 275 (373)
Q Consensus 201 ~~~~~~~i~~~~~~~~~~~-~~-~~~-~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~-~-~~~~i~~s~~~~~~~ 275 (373)
+++..+...+.....+... .. +.. ...+..+..++|+++|||.||+++|++.+|||+++ | .+|++..+..+..++
T Consensus 162 v~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~~~~~~~~~vl 241 (415)
T COG0814 162 VIYLVLLVVYLIPHWNPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAILIGSLIALVL 241 (415)
T ss_pred HHHHHHHHHHHhcccCHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHHHHHHHHHHHH
Confidence 7666655555443321111 11 111 36667899999999999999999999999999886 4 999999999999999
Q ss_pred HHHHHHHHHHHhcCCchhhhhhcCCCchHHHHHHHHHHHHHHHHhhhhhhchhHH
Q 017309 276 YGGVAVMGFLMFGQGTLSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLAR 330 (373)
Q Consensus 276 Y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~ 330 (373)
|+.+++.+|..+|+++.++++++.++++.... .+.....+...++|.+.++.+.
T Consensus 242 yi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~-~~~~~~~~~~~~~~~~~f~~~A 295 (415)
T COG0814 242 YILVGFFVFGCFGSLVFGNILAAKEQNISLLS-ALAGVINSPILSIALNIFALFA 295 (415)
T ss_pred HHHHHHHHHHhcCcccHHHHHHccCchHHHHH-HHHHhhcchHHHHHHHHHHHHH
Confidence 99999999999999999999999987765433 3333344444566666555553
No 9
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.90 E-value=3.2e-22 Score=189.63 Aligned_cols=308 Identities=13% Similarity=0.109 Sum_probs=228.2
Q ss_pred HHHHHHHHHhHhhhHHHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcCcchhhHHHHHHH
Q 017309 52 IFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLLISVLLY 130 (373)
Q Consensus 52 ~~~l~~~~iG~Gil~lP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~i~~~ 130 (373)
....+++++|+|++++|..+++.|.. +++.+++.+..+.++..++.|+..+.|+..++.+++++.+||+++++..+..+
T Consensus 3 ~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~~~~~~~~~~~~~G~~~g~~~~~~~~ 82 (381)
T TIGR00837 3 ALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPGGASFNTIAKDLLGKTGNIIAGLSLL 82 (381)
T ss_pred eEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCHHHHHHHHHHHH
Confidence 34567999999999999999999988 99889999999999999999998778888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhhHHHHHHHHHHHHHHHhhhe
Q 017309 131 TELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVLCVLF 210 (373)
Q Consensus 131 ~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~i~~ 210 (373)
+.++..+.+|.+..++.+..+++..... ..+ .+...++..++ +.....++.+..++++.+.+...+..++.++.
T Consensus 83 ~~~~~~~~ay~~~~~~~l~~~~~~~~~~----~~~-~~~~~~~~~~v-~~~l~~~G~~~~~~v~~i~~~~~l~~l~~~ii 156 (381)
T TIGR00837 83 FVLYILTYAYISGGGSILSRLIGEYFGF----PWS-ARAIVLIFTVL-FGSFVWLSTSAVDRITRVLIFGKIIAFALVFS 156 (381)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHhcCC----Ccc-HHHHHHHHHHH-HHHHHHhchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998887643211 122 23333333333 33445567888888888877776655444333
Q ss_pred eccc--cCcccCCC-CccccccchhhhhhhHhhhcccceehhhHhhhcc-CchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017309 211 LGTI--EGIGFHPT-GQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMA-DKTKFTKALITCFALCVLIYGGVAVMGFLM 286 (373)
Q Consensus 211 ~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~-~p~~~~~~i~~s~~~~~~~Y~~~g~~gy~~ 286 (373)
.... +..+..+. ....++.++..+++...++|.+|.+++++.+|++ |+||.+|++..+..+++++|+.+.......
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~~k~i~raii~g~~i~~~lY~l~~~~~~g~ 236 (381)
T TIGR00837 157 GLLPHVKGDLLLDVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGNVKKVKKSILIGSAIALVLYILWQLATMGN 236 (381)
T ss_pred HHHhhccHHHHhcCccccccHHHHHHHHHHHHHHHHcccccHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 2221 11111111 1122456778899999999998889999999997 556899999999999999999998877766
Q ss_pred hcCCchhhhhhcC-------------CCchHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHcCCCCCcchhhHHHHHHH
Q 017309 287 FGQGTLSQITLNM-------------PPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNYWCFILLRTA 353 (373)
Q Consensus 287 fg~~~~~~il~n~-------------~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (373)
.+.+...+...+. -.+.....+...+..+.+..|+.-.....+|.+.+.++++++ +.+|......
T Consensus 237 ~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~~--~~~~~~~~~~ 314 (381)
T TIGR00837 237 LPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDDS--KKGRFKTGLL 314 (381)
T ss_pred CCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--cCCCchhhhh
Confidence 6544332222211 112234456667778899999999999999999888876532 2335566677
Q ss_pred HHHHHHHHHHhcCC
Q 017309 354 LVFSSVCAAFLLPF 367 (373)
Q Consensus 354 ~~~~~~~iA~~vp~ 367 (373)
..+.+.++|.+.|+
T Consensus 315 ~~~~pl~~a~~~p~ 328 (381)
T TIGR00837 315 TFLPPLVFALFYPE 328 (381)
T ss_pred hHHhHHHHHHHhhH
Confidence 77888899999984
No 10
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.90 E-value=3.5e-21 Score=181.44 Aligned_cols=314 Identities=18% Similarity=0.187 Sum_probs=232.4
Q ss_pred CCCHHHHHHHHHHHHHhHhhhHHHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcCcchhh
Q 017309 45 GCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRL 123 (373)
Q Consensus 45 ~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~ 123 (373)
+.+.+++.+.+.++.+|+|+|++|.+.+..|+. +.+.+++++...++++.++.|...+.++..++.+++++.+||++++
T Consensus 2 ~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~g~~ 81 (394)
T PF03222_consen 2 NNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKKGGI 81 (394)
T ss_pred CchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHHHH
Confidence 567799999999999999999999999999998 9999999999999999999999877778999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhhHHHHHHHHHHHH
Q 017309 124 LISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATIL 203 (373)
Q Consensus 124 ~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~ 203 (373)
+..+...+..++.+.+|..-.++.+.++++.... .+.+ ++....+..++...+.. .+-+...+++..-+...+.
T Consensus 82 ~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~----~~~~-~~~~~~~f~~i~~~iv~-~g~~~v~~~n~~lv~~~i~ 155 (394)
T PF03222_consen 82 VIGISYLFLLYALLVAYISGGGSILSSLLGNQLG----TDLS-PWLSSLLFTIIFGGIVY-FGTKAVDRINRVLVFGMII 155 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcC----CCCc-HHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999876431 1222 22222222222222222 2444555665555444443
Q ss_pred HHHhhheeccccCcccCC----CCccccccchhhhhhhHhhhcccceehhhHhhhcc-CchhhHHHHHHHHHHHHHHHHH
Q 017309 204 IVLCVLFLGTIEGIGFHP----TGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMA-DKTKFTKALITCFALCVLIYGG 278 (373)
Q Consensus 204 ~~~~i~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~-~p~~~~~~i~~s~~~~~~~Y~~ 278 (373)
.++...... ...++.+. +....++...+.++++.++||..|+++|++.+.++ |++|.+|++..+..+..++|++
T Consensus 156 ~~~~l~~~~-~p~~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~~Gs~i~lv~yl~ 234 (394)
T PF03222_consen 156 SFIILVVYL-IPHWNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAIIIGSLIPLVMYLL 234 (394)
T ss_pred HHHHHHHHH-hhhcCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHH
Confidence 333322222 12222221 22346677889999999999999999999999998 6679999999999999999987
Q ss_pred HHHHHHH-----------HhcCCch--hhhhhcCCCchHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHcCCCCCcchh
Q 017309 279 VAVMGFL-----------MFGQGTL--SQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNYW 345 (373)
Q Consensus 279 ~g~~gy~-----------~fg~~~~--~~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~~~~~ 345 (373)
.-..... .-+++.. ...+.+..++.....+..++-.+.+.+||--....++|.+++.++.++ ...
T Consensus 235 w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~~~--~~~ 312 (394)
T PF03222_consen 235 WVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKLKN--NSS 312 (394)
T ss_pred HHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc--ccc
Confidence 6443332 1111111 123444555666677788888999999999999999999999987632 334
Q ss_pred hHHHHHHHHHHHHHHHHHhcCC
Q 017309 346 CFILLRTALVFSSVCAAFLLPF 367 (373)
Q Consensus 346 ~~~~~~~~~~~~~~~iA~~vp~ 367 (373)
+|........+.+.++|...|+
T Consensus 313 ~r~~~~~ltf~ppl~~a~~~p~ 334 (394)
T PF03222_consen 313 GRLKTWLLTFLPPLIFALLFPN 334 (394)
T ss_pred chHHHHHHHHHhHHHHHHHCcH
Confidence 5555566677788899999983
No 11
>PRK10483 tryptophan permease; Provisional
Probab=99.89 E-value=5.3e-21 Score=178.63 Aligned_cols=315 Identities=13% Similarity=0.085 Sum_probs=231.2
Q ss_pred CCCCCHHHHHHHHHHHHHhHhhhHHHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcCcch
Q 017309 43 AHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYG 121 (373)
Q Consensus 43 ~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~ 121 (373)
+++.+..++.+.+.++.||+|+|++|.+.++.|+. +.+++++++....++..++.|+..+.++..++..++|+.+||+|
T Consensus 8 ~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~g~~~~tma~~~LG~~g 87 (414)
T PRK10483 8 QTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLGKGW 87 (414)
T ss_pred cCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHH
Confidence 45688999999999999999999999999999999 99999999999999999999997767788899999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhhHHHHHHHHHH
Q 017309 122 RLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVAT 201 (373)
Q Consensus 122 ~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~ 201 (373)
+.+.+++..+..|+.+.+|+.-.++.+.+.+++.. .+.+ ++.-.++..++.-.+.. .+.+...+++..-+..+
T Consensus 88 ~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~~-----~~i~-~~~~~llF~~~~~~iv~-~gt~~vd~~n~~l~~~~ 160 (414)
T PRK10483 88 NVVNGISIAFVLYILTYAYISASGSILHHTFAEMS-----LNVP-ARAAGFGFALLVAFVVW-LSTKAVSRMTAIVLGAK 160 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcC-----CCCc-HHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999986521 1122 22333333333333322 25566666666555444
Q ss_pred HHHHHhhheeccccCcccC---C-C-CccccccchhhhhhhHhhhcccceehhhHhhhcc-CchhhHHHHHHHHHHHHHH
Q 017309 202 ILIVLCVLFLGTIEGIGFH---P-T-GQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMA-DKTKFTKALITCFALCVLI 275 (373)
Q Consensus 202 ~~~~~~i~~~~~~~~~~~~---~-~-~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~-~p~~~~~~i~~s~~~~~~~ 275 (373)
+..++..+... ....+.+ + . .....++..+.+.+++++||..|+++|++.+.++ |++|.+|++..+..+..++
T Consensus 161 i~~f~~~~~~l-~~~i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~~I~iGs~Iplv~ 239 (414)
T PRK10483 161 VITFFLTFGSL-LGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVYGTLMALAL 239 (414)
T ss_pred HHHHHHHHHHH-HhhcCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHHHHHHHHHHHHHH
Confidence 44433322221 1111111 1 1 1112244578999999999999999999999988 4679999999999999999
Q ss_pred HHHHHHHHHHHhc-----------CCchh--hhhhcCCCchHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHcCCCCCc
Q 017309 276 YGGVAVMGFLMFG-----------QGTLS--QITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISN 342 (373)
Q Consensus 276 Y~~~g~~gy~~fg-----------~~~~~--~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~~ 342 (373)
|++--......-+ ++... ..+.+..++.....+..++..+.+..||--....++|.+.+.++.+++
T Consensus 240 yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~~~~- 318 (414)
T PRK10483 240 YTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFDDS- 318 (414)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc-
Confidence 9985444443332 22211 111222334455556777788899999999999999999999876542
Q ss_pred chhhHHHHHHHHHHHHHHHHHhcCC
Q 017309 343 NYWCFILLRTALVFSSVCAAFLLPF 367 (373)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~iA~~vp~ 367 (373)
...|...-....+.+.++|.+.|+
T Consensus 319 -~~~r~~~~~ltflPPl~~al~~P~ 342 (414)
T PRK10483 319 -AMGRFKTALLTFLPPVVGGLLFPN 342 (414)
T ss_pred -cccceeeehhhHhhHHHHHHHhHH
Confidence 345655666788888999999883
No 12
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.88 E-value=2.2e-20 Score=174.33 Aligned_cols=312 Identities=13% Similarity=0.111 Sum_probs=223.4
Q ss_pred CCHHHHHHHHHHHHHhHhhhHHHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcCcchhhH
Q 017309 46 CSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLL 124 (373)
Q Consensus 46 ~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~ 124 (373)
.+...+.+.+.++.||+|+|++|.+.++.|+. ++++++++++...+|..++.|+..+.++..++..++|+.+||+|+.+
T Consensus 9 ~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~g~~l~tma~~~LG~~g~~i 88 (415)
T PRK09664 9 HSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIGNTWNII 88 (415)
T ss_pred cchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHHHHH
Confidence 36678999999999999999999999999999 99999999999999999999998777888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhhHHHHHHHHHHHHH
Q 017309 125 ISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILI 204 (373)
Q Consensus 125 ~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~ 204 (373)
.+++..+..|+.+.+|+.-.++.+.+.++... +.+.+ .+...++..++.-++.. .+.+...+.+..-+..+++.
T Consensus 89 ~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~----~~~i~-~~~~~llF~~~~~~~v~-~gt~~vd~~nr~l~~~~ii~ 162 (415)
T PRK09664 89 SGITVAFVLYILTYAYISANGAIISETISMNL----GYHAN-PRIVGICTAIFVASVLW-ISSLAASRITSLFLGLKIIS 162 (415)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHhhhc----cCCCc-HHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999986421 11222 22222333333333322 24466666665544333333
Q ss_pred HHhhheeccccCcccCC---CCccc----cccchhhhhhhHhhhcccceehhhHhhhcc-CchhhHHHHHHHHHHHHHHH
Q 017309 205 VLCVLFLGTIEGIGFHP---TGQVV----KWSGMPFAIGIYGFCYSGHSVFPNIYQSMA-DKTKFTKALITCFALCVLIY 276 (373)
Q Consensus 205 ~~~i~~~~~~~~~~~~~---~~~~~----~~~~~~~~~~~~~faf~~~~~~~~i~~~m~-~p~~~~~~i~~s~~~~~~~Y 276 (373)
++..+... ....+.+. ..... .+...+.+++++++||..|+++|++.+.++ |++|.+|++..+..+..++|
T Consensus 163 f~~~~~~l-~~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~kaIl~Gs~IpLviY 241 (415)
T PRK09664 163 FVIVFGSF-FFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSVVFGSLLALVIY 241 (415)
T ss_pred HHHHHHHH-hhcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHHHHHHHHHHHHHH
Confidence 32222111 11111111 11111 123477899999999999999999999988 45789999999988888888
Q ss_pred HHHHHH--H---------HHHhcCCchhhhh---hcCCCchHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHcCCCCCc
Q 017309 277 GGVAVM--G---------FLMFGQGTLSQIT---LNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISN 342 (373)
Q Consensus 277 ~~~g~~--g---------y~~fg~~~~~~il---~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~~ 342 (373)
.+-=.+ | ....|++....+. .+ .++.....+..++..+.+..||--....++|.+.+.+..+++
T Consensus 242 ~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~-~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~~~~- 319 (415)
T PRK09664 242 LFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGT-KQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKIDNS- 319 (415)
T ss_pred HHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhh-ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc-
Confidence 654222 2 1223333332111 12 334455566777788899999999999999999999876542
Q ss_pred chhhHHHHHHHHHHHHHHHHHhcCC
Q 017309 343 NYWCFILLRTALVFSSVCAAFLLPF 367 (373)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~iA~~vp~ 367 (373)
...|...-....+.+.++|.+.|+
T Consensus 320 -~~~r~~~~~ltflPPl~~al~~P~ 343 (415)
T PRK09664 320 -HGGRFKTVLLTFLPPALLYLIFPN 343 (415)
T ss_pred -cccceeeehhhHhhhHHHHHHhhH
Confidence 345666666788888899998883
No 13
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.88 E-value=2.5e-20 Score=174.86 Aligned_cols=311 Identities=15% Similarity=0.141 Sum_probs=225.2
Q ss_pred CHHHHHHHHHHHHHhHhhhHHHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcCcchhhHH
Q 017309 47 SFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLLI 125 (373)
Q Consensus 47 s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~~ 125 (373)
+...+.+.+.++.+|+|+|++|.+.+..|+. +.+++++++....|+.+++.|+..+.++..++.+++|+.+||+++++.
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~~~~~~~~a~~~LG~~g~~i~ 83 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQWLT 83 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhChHHHHHH
Confidence 6688999999999999999999999999998 999999999989999999999876667778999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhhHHHHHHHHHHHHHH
Q 017309 126 SVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIV 205 (373)
Q Consensus 126 ~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~ 205 (373)
.+...+..+..+.+|..-.++.+.+.+..+.. .+.+..+ ..+ .+.+++.+....+.+...+++..-+...+...
T Consensus 84 ~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~----~~i~~~~-~~l-~F~~~~~~iv~~g~~~v~~~n~~L~~~~ii~~ 157 (403)
T PRK15132 84 GFSMMFLMYALTAAYISGAGELLASSISDWTG----ISMSPTA-GVL-LFTLVAGGVVCVGTSSVDLFNRFLFSAKIIFL 157 (403)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHhcc----CCCChHH-HHH-HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998888765321 1222222 222 22222222222344555555555443333333
Q ss_pred HhhheeccccCcccCCCCc-cccccchhhhhhhHhhhcccceehhhHhhhcc-CchhhHHHHHHHHHHHHHHHHHHHHHH
Q 017309 206 LCVLFLGTIEGIGFHPTGQ-VVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMA-DKTKFTKALITCFALCVLIYGGVAVMG 283 (373)
Q Consensus 206 ~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~-~p~~~~~~i~~s~~~~~~~Y~~~g~~g 283 (373)
+.... ....+++.+.... +.+.+..+.+++++.+||..|+++|++.+.++ |++|.+|++..+..+..++|+..-...
T Consensus 158 ~~~~~-~l~p~~~~~~L~~~~~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs~i~li~yl~W~~~~ 236 (403)
T PRK15132 158 VVMLA-LMMPHIHKVNLLTLPLQQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGSAIPLVAYIFWQLAT 236 (403)
T ss_pred HHHHH-HHHHhcCHHHHhcCCccccHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221 1122222211110 11112488999999999999999999999988 446999999999999999999887766
Q ss_pred HHHhcCCch----------hhhhhcC---CCchHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHcCCCCCcchhhHHHH
Q 017309 284 FLMFGQGTL----------SQITLNM---PPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNYWCFILL 350 (373)
Q Consensus 284 y~~fg~~~~----------~~il~n~---~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (373)
...-+++.- ++++..+ .++.....+..+...+.+.+||--....++|.+.+.+.++++ ...|...
T Consensus 237 lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~~~--~~~r~~~ 314 (403)
T PRK15132 237 LGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRRNT--VGGRLQT 314 (403)
T ss_pred HhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcc--ccCCchh
Confidence 665543321 1222222 234455566778788899999999999999999998865432 3346777
Q ss_pred HHHHHHHHHHHHHhcC
Q 017309 351 RTALVFSSVCAAFLLP 366 (373)
Q Consensus 351 ~~~~~~~~~~iA~~vp 366 (373)
.....+.+.++|+..|
T Consensus 315 ~~l~flppli~a~~~P 330 (403)
T PRK15132 315 GLITFLPPLAFALFYP 330 (403)
T ss_pred ehhhHHHHHHHHHHhH
Confidence 7888899999999998
No 14
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.82 E-value=5.1e-18 Score=159.74 Aligned_cols=309 Identities=11% Similarity=0.080 Sum_probs=220.4
Q ss_pred HHHHHHHHHhHhhhHHHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCC-CCCChHHHHHHhcCcchhhHHHHHH
Q 017309 52 IFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKE-GITTYPDIGEAAFGKYGRLLISVLL 129 (373)
Q Consensus 52 ~~~l~~~~iG~Gil~lP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~-~~~~y~~l~~~~~G~~~~~~~~i~~ 129 (373)
++.+.++++|+|+|++|...++.||. .++..++...+.+++..++.|.....+ +..++.|++++.|||+++.+.++..
T Consensus 9 ~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~ii~~lY 88 (397)
T TIGR00814 9 MLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGILITLLY 88 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHHHHHHH
Confidence 78899999999999999999999999 666677777888888898888843333 4789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhhHHHHHHHHHHHHHHHhhh
Q 017309 130 YTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVLCVL 209 (373)
Q Consensus 130 ~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~i~ 209 (373)
++..+..+.+|....++.+.+++..... .+.+ .+....+..++.+-.....+.+.+.+++.+-+...+...+.+.
T Consensus 89 ~~~~~~i~~aY~~~~~~~~~~fl~~~~~----~~~p-~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l~~l~ 163 (397)
T TIGR00814 89 FFAIYPILLIYSVAITNDSASFLVNQLG----TAPP-LRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLILVLLS 163 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCc-HHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988877754321 1111 2222233333333344555788888888877655544433333
Q ss_pred eeccccCcccCC---CCc-cccccchhhhhhhHhhhcccceehhhHh----hhccC----chhhHHHHHHHHHHHHHHHH
Q 017309 210 FLGTIEGIGFHP---TGQ-VVKWSGMPFAIGIYGFCYSGHSVFPNIY----QSMAD----KTKFTKALITCFALCVLIYG 277 (373)
Q Consensus 210 ~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~faf~~~~~~~~i~----~~m~~----p~~~~~~i~~s~~~~~~~Y~ 277 (373)
.... ..++.+. .++ ...+.++..+.+..++||.+|+.++++. +|.+| ++|.+|++..+..+..++|+
T Consensus 164 ~~li-p~~~~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~ 242 (397)
T TIGR00814 164 LYLI-PHWNGANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVATVM 242 (397)
T ss_pred HHHH-HHcCHHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 2221 2222211 111 1234678999999999999999999998 34443 34788999999999999999
Q ss_pred HHHHHHHHHhcCCchhh-------hhh---cCCCchHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHcC----CC--CC
Q 017309 278 GVAVMGFLMFGQGTLSQ-------ITL---NMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLP----AG--IS 341 (373)
Q Consensus 278 ~~g~~gy~~fg~~~~~~-------il~---n~~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~~----~~--~~ 341 (373)
..-+.+....+++.... ++. |-.+++....+......+.+..||--....++|.+.+++. .+ +.
T Consensus 243 ~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~~~~~~ 322 (397)
T TIGR00814 243 FFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLKMKGKKI 322 (397)
T ss_pred HHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccccccc
Confidence 99888888877544221 111 2223445556677777789999999999999999988772 11 12
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhcC
Q 017309 342 NNYWCFILLRTALVFSSVCAAFLLP 366 (373)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~iA~~vp 366 (373)
.+++.+......+++.++.+|+.=|
T Consensus 323 ~~~~~~~~~~~~~~~~~w~~~~~n~ 347 (397)
T TIGR00814 323 NIRKLNRAIAIFIVLTTWIVAYINP 347 (397)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3344456677777788888888777
No 15
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.81 E-value=1.6e-17 Score=155.36 Aligned_cols=309 Identities=12% Similarity=0.102 Sum_probs=215.5
Q ss_pred HHHHHHHHHhHhhhHHHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhC-CCCCChHHHHHHhcCcchhhHHHHHH
Q 017309 52 IFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESK-EGITTYPDIGEAAFGKYGRLLISVLL 129 (373)
Q Consensus 52 ~~~l~~~~iG~Gil~lP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~-~~~~~y~~l~~~~~G~~~~~~~~i~~ 129 (373)
+..+.++.+|+|+|+||-.....|.. +++++++++.+++++++.+.|...+. ++..++.+++++.+||+++.+.+++.
T Consensus 25 ~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~ilY 104 (443)
T PRK13629 25 TLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFLY 104 (443)
T ss_pred HHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHHHHH
Confidence 48899999999999999999999988 99999999999999999999986554 66789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhhHHHHHHHHHHHHHHHhhh
Q 017309 130 YTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVLCVL 209 (373)
Q Consensus 130 ~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~i~ 209 (373)
.+..+..+.+|.....+.+.+++.+... .. .. +++...++..+++.... ..+-+..-+++..-+...+...+...
T Consensus 105 ff~ly~ll~aY~~~itn~l~sfl~~ql~-~~--~~-~r~l~slifv~~l~~iv-~~G~~~v~kv~~~Lv~~~i~~l~~l~ 179 (443)
T PRK13629 105 FFAICPLLWIYGVTITNTFMTFWENQLG-FA--PL-NRGFVALFLLLLMAFVI-WFGKDLMVKVMSYLVWPFIASLVLIS 179 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcC-cC--Cc-cHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888876543311 00 11 23333333333333322 23445555666554444333332222
Q ss_pred eeccccCcccCC---CC----ccc-c---ccchhhhhhhHhhhcccceehhhHhhh----cc-----C--chhhHHHHHH
Q 017309 210 FLGTIEGIGFHP---TG----QVV-K---WSGMPFAIGIYGFCYSGHSVFPNIYQS----MA-----D--KTKFTKALIT 267 (373)
Q Consensus 210 ~~~~~~~~~~~~---~~----~~~-~---~~~~~~~~~~~~faf~~~~~~~~i~~~----m~-----~--p~~~~~~i~~ 267 (373)
.+ ....++.+. .+ +.. + ....+.+++++++||..|+.+|++... .+ | ++|.+|++..
T Consensus 180 ~~-LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~ 258 (443)
T PRK13629 180 LS-LIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISR 258 (443)
T ss_pred HH-HHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHH
Confidence 21 112222111 01 011 1 124778999999999999999999888 43 3 4578899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCch-----hh--hh----hcCCCc--------hHHHHHHHHHHHHHHHHhhhhhhchh
Q 017309 268 CFALCVLIYGGVAVMGFLMFGQGTL-----SQ--IT----LNMPPH--------AFASKVAVWTTVINPFTKYALLMNPL 328 (373)
Q Consensus 268 s~~~~~~~Y~~~g~~gy~~fg~~~~-----~~--il----~n~~~~--------~~~~~i~~~~~~i~~~~s~pl~~~~~ 328 (373)
+..+..++|+..-+.+...-+++.. +| ++ +.++++ +....+..+...+.+..||--....+
T Consensus 259 gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl 338 (443)
T PRK13629 259 ASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGT 338 (443)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988887777664331 11 11 122321 34555666667778999999999999
Q ss_pred HHHHHHHcC-----CCC--CcchhhHHHHHHHHHHHHHHHHHhcC
Q 017309 329 ARSIEELLP-----AGI--SNNYWCFILLRTALVFSSVCAAFLLP 366 (373)
Q Consensus 329 ~~~~~~~~~-----~~~--~~~~~~~~~~~~~~~~~~~~iA~~vp 366 (373)
+|.++.++. .++ ...+..+......+++.++.+|+.=|
T Consensus 339 ~E~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~np 383 (443)
T PRK13629 339 LEGLNGLILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANP 383 (443)
T ss_pred HHHHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 999988772 111 23344466777788888888888777
No 16
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.72 E-value=5.2e-15 Score=139.25 Aligned_cols=285 Identities=16% Similarity=0.193 Sum_probs=201.5
Q ss_pred CCCCHHHHHHHHHHHHHhHhhhHHHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcCcchh
Q 017309 44 HGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGR 122 (373)
Q Consensus 44 ~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~ 122 (373)
+|.|.+|.++.++++++|+|++.+|....+.+.. +++..++.++........+.+..++.|++ +..++.++.+||+.+
T Consensus 1 ~~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~~-~~~~~~~~~~Gk~~g 79 (359)
T TIGR00912 1 DKISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPEK-NFSEILSKYLGKILG 79 (359)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHhhHHHH
Confidence 3688999999999999999999999988776655 88888899999999999999998777764 899999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhhHHHHHHHHHHH
Q 017309 123 LLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATI 202 (373)
Q Consensus 123 ~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~ 202 (373)
++..+...++............++.++...... .+. +...+..++..-....++.+..++++.+.+...+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---------tp~-~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~~i 149 (359)
T TIGR00912 80 RLLSILFILYFFLIAAYLIRIFADFIKTYLLPR---------TPI-IVIIILIIIVSIYIVRKGIEVLLRTAEILLIIFL 149 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---------CCH-HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 999988888877777777777777776543210 112 2223333333334555789999988887766555
Q ss_pred HHH-HhhheeccccCcccCC--CCccccccchhhhhh-hHhhhcccceehhhHhhhccCchhhHHHHHHHHHHHHHHHHH
Q 017309 203 LIV-LCVLFLGTIEGIGFHP--TGQVVKWSGMPFAIG-IYGFCYSGHSVFPNIYQSMADKTKFTKALITCFALCVLIYGG 278 (373)
Q Consensus 203 ~~~-~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~faf~~~~~~~~i~~~m~~p~~~~~~i~~s~~~~~~~Y~~ 278 (373)
... +.+.... .+..+++. +....++.+...+.- ...++|.+.+.+....+++|||+|.+|+...+..++.++|..
T Consensus 150 ~~~~~il~~~~-~~~~~~~~l~P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~~~~~k~~~~~~~~~~~ly~~ 228 (359)
T TIGR00912 150 ILFILVLILLA-PKLGNIKNLLPVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKKKKIKKSIIKAIIIGVLLYIL 228 (359)
T ss_pred HHHHHHHHHHh-cccccHHHccCccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHHHHH
Confidence 442 2222211 11122222 222334455555554 788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCchhhh-------hhcCCCchH---HHHHHHHHHHHHHHHhhhhhhchhHHHHHHHcCCCC
Q 017309 279 VAVMGFLMFGQGTLSQI-------TLNMPPHAF---ASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGI 340 (373)
Q Consensus 279 ~g~~gy~~fg~~~~~~i-------l~n~~~~~~---~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~ 340 (373)
..+.....+|.+..++. .....-.+. .-.+.........+.+..+.++.....+.+.++.++
T Consensus 229 ~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~~~~~~~ 300 (359)
T TIGR00912 229 TTFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSKLFKKRK 300 (359)
T ss_pred HHHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999986544321 111111111 112222345567778888888888888888876553
No 17
>PRK10655 potE putrescine transporter; Provisional
Probab=99.69 E-value=6.3e-14 Score=135.41 Aligned_cols=236 Identities=16% Similarity=0.101 Sum_probs=163.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhHhhhHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcCcch
Q 017309 42 IAHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYG 121 (373)
Q Consensus 42 ~~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~ 121 (373)
.+||.|.++.+...+++++|+|++.+|..+++.|..+++.+++.++........+.|...+.|........+++.+||+.
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~GG~y~y~~~~~G~~~ 83 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGTISILSWLVTAVGSMALAYAFAKCGMFSRKSGGMGGYAEYAFGKSG 83 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHcCcch
Confidence 35689999999999999999999999999988887688888999999998899999987777888888888999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHH-HHHHHHHhhhcccCCchhhHHHHHHHHH
Q 017309 122 RLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGI-LTALIVLPTIWLRDLRVISYLSATGVVA 200 (373)
Q Consensus 122 ~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-i~~~i~~pl~~~~~l~~l~~~s~~~~~~ 200 (373)
+++..+..++.......++.....+++..+++... +....+.+ +..+..+-....++.+...+++.+....
T Consensus 84 gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~~~--------~~~~~~~~~~~~l~~~~~ln~~g~~~~~~i~~i~~~~ 155 (438)
T PRK10655 84 NFMANYTYGVSLLIANVAIAISAVGYGTELFGATL--------SPVQICLATIGVLWLCTVANFGGARITGQISSVTVWG 155 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--------chHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 99999888777666555655555666666554210 11111211 1112222223344566666666655444
Q ss_pred HHHHHHhhheec--cccCcccCCC--Cc-cccccchhhhhhhHhhhcccceehhhHhhhccCch-hhHHHHHHHHHHHHH
Q 017309 201 TILIVLCVLFLG--TIEGIGFHPT--GQ-VVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKALITCFALCVL 274 (373)
Q Consensus 201 ~~~~~~~i~~~~--~~~~~~~~~~--~~-~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~-~~~~~i~~s~~~~~~ 274 (373)
.+...+.+.... ..++.+..+. +. ...+.++..++....|+|.|.+......+|+|||+ +.||++..+..++.+
T Consensus 156 ~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~~~~~~~ 235 (438)
T PRK10655 156 VIIPVVGLSIIGWFWFSPSLYVAAWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPERNVPIAVLGGTLGAAV 235 (438)
T ss_pred HHHHHHHHHHHHHHHhCcccccCCcCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccHHHHHHHHHHHH
Confidence 333222222111 1111111110 01 11123566678889999999999999999999997 699999999999999
Q ss_pred HHHHHHHHHHH
Q 017309 275 IYGGVAVMGFL 285 (373)
Q Consensus 275 ~Y~~~g~~gy~ 285 (373)
+|+........
T Consensus 236 ~Y~l~~~~~~~ 246 (438)
T PRK10655 236 IYIVSTNVIAG 246 (438)
T ss_pred HHHHHHHHHHh
Confidence 99987765443
No 18
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.69 E-value=1.3e-14 Score=139.78 Aligned_cols=238 Identities=12% Similarity=0.062 Sum_probs=165.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhHhhhHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcCcch
Q 017309 42 IAHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYG 121 (373)
Q Consensus 42 ~~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~ 121 (373)
.+||.+.++.+...+++++|+|++.+|...++.|...++.+++.++........+.|...+.|......+.+++ +||+.
T Consensus 3 ~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~~i~~wli~~~~~l~~al~~aEL~s~~P~~GG~y~y~~~-~g~~~ 81 (435)
T PRK10435 3 SAKKIGLFACTGVVAGNMMGSGIALLPANLASIGSIAIWGWIISIIGAMSLAYVYARLATKNPQQGGPIAYAGE-ISPAF 81 (435)
T ss_pred CCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHH-HCcHH
Confidence 46689999999999999999999999999998887677778888888888889999998888888887888888 89999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhhHHHHHHHHHH
Q 017309 122 RLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVAT 201 (373)
Q Consensus 122 ~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~ 201 (373)
++++.+..+........++.....+++..+.+.... +. ......+..+..+-+...++.+..++++.+..+..
T Consensus 82 gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~~-----~~--~~~~~~~~i~~~~~~ln~~gvk~~~~i~~i~~~~~ 154 (435)
T PRK10435 82 GFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLND-----PI--PAGIACIAIVWVFTFVNMLGGTWVSRLTTIGLVLV 154 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCC-----hH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 999988777655455556666666777666553210 01 11111112222222334455666666665555443
Q ss_pred HHHHHhhheecc--ccCc----ccCCCCccccccchhhhhhhHhhhcccceehhhHhhhccCch-hhHHHHHHHHHHHHH
Q 017309 202 ILIVLCVLFLGT--IEGI----GFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKALITCFALCVL 274 (373)
Q Consensus 202 ~~~~~~i~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~-~~~~~i~~s~~~~~~ 274 (373)
++..+....... .+.. +++. ....++.++..++....|+|.|.+.+....+|+|||+ +.||++..+...+.+
T Consensus 155 li~~~~~~i~g~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPrAi~~~~~iv~i 233 (435)
T PRK10435 155 LIPVVGTAIVGWHWFDAATYAANWNT-SDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLATMLGTGLAGI 233 (435)
T ss_pred HHHHHHHHHHHHHHcCHHhhcccccC-CCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccHHHHHHHHHHHH
Confidence 333222211111 1110 1111 1123345778888999999999999999999999996 799999999999999
Q ss_pred HHHHHHHHHHHHhc
Q 017309 275 IYGGVAVMGFLMFG 288 (373)
Q Consensus 275 ~Y~~~g~~gy~~fg 288 (373)
+|+...+.......
T Consensus 234 lYil~~~~~~~~~p 247 (435)
T PRK10435 234 IYIAATQVISGMFP 247 (435)
T ss_pred HHHHHHHHHHhcCC
Confidence 99998886654443
No 19
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.68 E-value=2.2e-14 Score=139.10 Aligned_cols=236 Identities=17% Similarity=0.219 Sum_probs=165.9
Q ss_pred cccCCCCCCHHHHHHHHHHHHHhHhhhHHH-HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhc
Q 017309 39 ELPIAHGCSFTQTIFNGINVMAGVGLLSTP-YTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAF 117 (373)
Q Consensus 39 ~~~~~~~~s~~~~~~~l~~~~iG~Gil~lP-~~~~~~G~~g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~ 117 (373)
+.+.+|+.+.++..+..++.++|+|++..| .+.+++|..+++.+++.++........+.|...+.|...+..+.+++.+
T Consensus 7 ~~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~Gg~~~~~~~~~ 86 (452)
T TIGR01773 7 GLKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGPAALLAYLLAGLLVVFIMRMLGEMAVANPDTGSFSTYADDAI 86 (452)
T ss_pred hHhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHh
Confidence 445677899999999999999999999998 5667778668888889999999999999999887888889999999999
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhhHHHHHH
Q 017309 118 GKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATG 197 (373)
Q Consensus 118 G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~ 197 (373)
||+.+++..+..++.....+.+.....++.++.+.+.. ..+.+ .+...+++-....+..+..++++...
T Consensus 87 g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~-~~~~~~~~~~~n~~gv~~~~~~~~~~ 155 (452)
T TIGR01773 87 GRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPDI----------PLWLF-SLILTIVLTLTNLYSVKSYGEFEFWF 155 (452)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcC----------cHHHH-HHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 99999999998888877777777777787777665431 12222 22222222233334566666666544
Q ss_pred HHHHHHHHHhhh---e---eccccCc---ccCC---CC--ccccccchhhhhhhHhhhcccceehhhHhhhccCch-hhH
Q 017309 198 VVATILIVLCVL---F---LGTIEGI---GFHP---TG--QVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFT 262 (373)
Q Consensus 198 ~~~~~~~~~~i~---~---~~~~~~~---~~~~---~~--~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~-~~~ 262 (373)
....+...+.++ . ....... ++.+ .. .+.++.++..++....|+|.|.+......+|+|||+ +.|
T Consensus 156 ~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r~iP 235 (452)
T TIGR01773 156 ALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSNPIKSIT 235 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcChhhHHH
Confidence 433222211111 1 1111100 0111 00 012234578889999999999999999999999997 699
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 017309 263 KALITCFALCVLIYGGVAVMGFL 285 (373)
Q Consensus 263 ~~i~~s~~~~~~~Y~~~g~~gy~ 285 (373)
|++..+...+.++|+........
T Consensus 236 rAi~~~~~~~~~~y~l~~~~~~~ 258 (452)
T TIGR01773 236 RATNSVIWRIIVFYLGSIFIVVA 258 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHee
Confidence 99998888888999886554443
No 20
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.67 E-value=5e-14 Score=139.17 Aligned_cols=244 Identities=11% Similarity=0.081 Sum_probs=171.5
Q ss_pred cCCCCCCHHHHHHHHHHHHHhHhhhHHHHHH--HhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcC
Q 017309 41 PIAHGCSFTQTIFNGINVMAGVGLLSTPYTV--KEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFG 118 (373)
Q Consensus 41 ~~~~~~s~~~~~~~l~~~~iG~Gil~lP~~~--~~~G~~g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G 118 (373)
+.+|+.+.++.++..++.++|+|++.+|... ..+|...++.+++.++.+......+.|...+.|...+....+++.+|
T Consensus 25 ~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~~~ls~liagv~~l~~al~yaElas~~P~sGg~Y~y~~~~~G 104 (557)
T TIGR00906 25 KMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGLAAVLSGFCYAEFGARVPKAGSAYLYSYVTVG 104 (557)
T ss_pred chhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeeHHHHhC
Confidence 4567899999999999999999999998754 34676566778888888888999999998778877777777999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCC----CCCCCc---ccCchhHHHHHHHHHHHhhhcccCCchhh
Q 017309 119 KYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGAS----LDWPGF---QLDSTHLFGILTALIVLPTIWLRDLRVIS 191 (373)
Q Consensus 119 ~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~----~~~~~~---~~~~~~~~~~i~~~i~~pl~~~~~l~~l~ 191 (373)
+..++++.+..++.......+.....++++..++.... .+..+. ..........+..++++-....++.+..+
T Consensus 105 ~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~Gik~s~ 184 (557)
T TIGR00906 105 ELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFGVKESA 184 (557)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHHHHhchhHHH
Confidence 99999999988888777777777777777766553211 000000 00011112222222333344556888888
Q ss_pred HHHHHHHHHHHHHHHhhheeccc--cCcccCC-------CCccccccchhhhhhhHhhhcccceehhhHhhhccCch-hh
Q 017309 192 YLSATGVVATILIVLCVLFLGTI--EGIGFHP-------TGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KF 261 (373)
Q Consensus 192 ~~s~~~~~~~~~~~~~i~~~~~~--~~~~~~~-------~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~-~~ 261 (373)
+++.+.....+...+.++..+.. +..++.. +-.++++.++..+....+|+|.|.+.+....+|+|||+ ++
T Consensus 185 ~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~r~i 264 (557)
T TIGR00906 185 WVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVKNPQRAI 264 (557)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhccCccccc
Confidence 88887766655444333332221 1112210 11123445678888999999999999999999999998 59
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 017309 262 TKALITCFALCVLIYGGVAVMGF 284 (373)
Q Consensus 262 ~~~i~~s~~~~~~~Y~~~g~~gy 284 (373)
||++..++.+++++|..+.+.-.
T Consensus 265 P~aii~sl~i~~vlY~lv~~~l~ 287 (557)
T TIGR00906 265 PIGIVTSLLVCFVAYFLMSAALT 287 (557)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999877543
No 21
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.67 E-value=2.9e-14 Score=147.30 Aligned_cols=242 Identities=15% Similarity=0.110 Sum_probs=169.3
Q ss_pred cCCCCCCHHHHHHHH-HHHHHhHhhhH-HHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhh-CCCCCChHHHHHHh
Q 017309 41 PIAHGCSFTQTIFNG-INVMAGVGLLS-TPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFES-KEGITTYPDIGEAA 116 (373)
Q Consensus 41 ~~~~~~s~~~~~~~l-~~~~iG~Gil~-lP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~-~~~~~~y~~l~~~~ 116 (373)
+..+|.|++++++.- +..|+|+|++- +++.+.++|.. +++.++++++++..+...+.+.+.+ .++...-..+.++.
T Consensus 73 ~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG~Y~yisra 152 (953)
T TIGR00930 73 AGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGGAYYLISRS 152 (953)
T ss_pred CCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 345689999999888 99999999975 78888999987 8888999999999999999998775 56666666778999
Q ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhhHHHHH
Q 017309 117 FGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSAT 196 (373)
Q Consensus 117 ~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~ 196 (373)
+|+..+..+.++.++.....+..|.+.+++++..+++................+..+..+++. +....+.+..++++.+
T Consensus 153 lGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~l~ll~-~In~~Gvk~~ak~q~v 231 (953)
T TIGR00930 153 LGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTVTVVVLL-GISFAGMEWENKAQVL 231 (953)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHHHHHHHH-HHHHhhHHHHHHHHHH
Confidence 999999999999998888889999999999998887532110000001112222222222222 2233466666666665
Q ss_pred HHHHHHHHHHhhheeccccCcc-------------cCCC-Cc--cccccchhhhhhhHhhhcccceehhhHhhhccCch-
Q 017309 197 GVVATILIVLCVLFLGTIEGIG-------------FHPT-GQ--VVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT- 259 (373)
Q Consensus 197 ~~~~~~~~~~~i~~~~~~~~~~-------------~~~~-~~--~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~- 259 (373)
.+++.++.++.+++.......+ +... .+ .....++...++++++||.|......+.+|+|||+
T Consensus 232 l~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgElKnP~r 311 (953)
T TIGR00930 232 FLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGDLKDPQK 311 (953)
T ss_pred HHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhccChhh
Confidence 5544343333332222111100 0000 00 11112377888889999999999999999999997
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 017309 260 KFTKALITCFALCVLIYGGVAVMG 283 (373)
Q Consensus 260 ~~~~~i~~s~~~~~~~Y~~~g~~g 283 (373)
.+||.+..++.+++++|+++.+..
T Consensus 312 ~IPratl~ai~i~~vlYllv~~~~ 335 (953)
T TIGR00930 312 AIPKGTLLAILTTTVVYLGSVVLF 335 (953)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999997643
No 22
>PRK10249 phenylalanine transporter; Provisional
Probab=99.65 E-value=1.8e-13 Score=132.79 Aligned_cols=235 Identities=14% Similarity=0.189 Sum_probs=162.5
Q ss_pred cCCCCCCHHHHHHHHHHHHHhHhhhHHHHHH-HhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcCc
Q 017309 41 PIAHGCSFTQTIFNGINVMAGVGLLSTPYTV-KEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGK 119 (373)
Q Consensus 41 ~~~~~~s~~~~~~~l~~~~iG~Gil~lP~~~-~~~G~~g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~ 119 (373)
+.+|+.+.++..+..++.++|+|++..|... +++|...++.+++.+++....+..+.|...+.|...+..+.+++.+|+
T Consensus 18 ~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp~~~l~~li~~~~~~~~~~~~aEl~~~~P~~Gg~~~y~~~~~g~ 97 (458)
T PRK10249 18 TLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGPAVLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAYKYWGP 97 (458)
T ss_pred hhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCh
Confidence 4567899999999999999999999877654 566755777888999999999999999988889999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhhHHHHHHHH
Q 017309 120 YGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVV 199 (373)
Q Consensus 120 ~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~ 199 (373)
+.++++.+..++.......+.....+.+++.+.+.. ..+.+. +...+.+-....++.+..++++.....
T Consensus 98 ~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~~~-~~~~~l~~~lN~~gv~~~~~i~~~~~~ 166 (458)
T PRK10249 98 FAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPDV----------PTWIWA-AAFFIIINAVNLVNVRLYGETEFWFAL 166 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcC----------cHHHHH-HHHHHHHHHHHHhcchhhhhHHHHHHH
Confidence 999999998887776666666666666666554321 112222 222222223344466666665544332
Q ss_pred HHHHHHHhh----hee--ccccC--cccCC----C-CccccccchhhhhhhHhhhcccceehhhHhhhccCch-hhHHHH
Q 017309 200 ATILIVLCV----LFL--GTIEG--IGFHP----T-GQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKAL 265 (373)
Q Consensus 200 ~~~~~~~~i----~~~--~~~~~--~~~~~----~-~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~-~~~~~i 265 (373)
..+..++.+ ++. ....+ .+.+. . ..+.++.++..++....|+|.|.+.+....+|+|||+ +.||++
T Consensus 167 ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~k~iPrai 246 (458)
T PRK10249 167 IKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDPEKSIPKAV 246 (458)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHhhHHHHHH
Confidence 222111111 110 10100 01110 0 0123455678899999999999999999999999997 589999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 017309 266 ITCFALCVLIYGGVAVMGFLM 286 (373)
Q Consensus 266 ~~s~~~~~~~Y~~~g~~gy~~ 286 (373)
..++..+.++|..........
T Consensus 247 ~~~~~~~~~~y~~~~~~~~~~ 267 (458)
T PRK10249 247 NQVVYRILLFYIGSLVVLLAL 267 (458)
T ss_pred HHHHHHHHHHHHHHHHHHhee
Confidence 999999999998765544433
No 23
>PRK11021 putative transporter; Provisional
Probab=99.65 E-value=1.2e-13 Score=132.33 Aligned_cols=229 Identities=18% Similarity=0.194 Sum_probs=156.6
Q ss_pred CCHHHHHHHHHHHHHhHhhhHHHHHH-HhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcCcchhhH
Q 017309 46 CSFTQTIFNGINVMAGVGLLSTPYTV-KEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLL 124 (373)
Q Consensus 46 ~s~~~~~~~l~~~~iG~Gil~lP~~~-~~~G~~g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~ 124 (373)
.|+++++...+++|+|+|++.+|... +.+|...++.+++.++........+.|...+.|+.......+++.+||+.+++
T Consensus 1 ~g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~~~~~~~~i~~~~~~~~al~~aEl~s~~P~aGG~y~y~~~~~G~~~gf~ 80 (410)
T PRK11021 1 LGLWQGIGLLSTSLLGTGVFAVPALAALVAGNNSLWAWPLLILLIFPIAIVFARLGRHFPHAGGPAHFVGMAFGPRLGRV 80 (410)
T ss_pred CcHHHHHHHHHHHHHhhHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHhHHHHhCchhHHH
Confidence 36899999999999999999988865 55564478888899999999999999998888988889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhhHHHHHHHHHHHHH
Q 017309 125 ISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILI 204 (373)
Q Consensus 125 ~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~ 204 (373)
..+..++.......+......+++..+++.. .. ......+...+++-+...++.+..++++.+..+..+..
T Consensus 81 ~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~--~~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~~~~~i 151 (410)
T PRK11021 81 TGWLFLSVIPVGLPAALQIAAGFGQALFGWS-------SW--QLLLAELLTLALLWLLNLRGASSSANLQTVIALLIVAL 151 (410)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHcCCC-------Cc--hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 9887776443334444444555555554321 01 11222222222233344456666666666544332222
Q ss_pred HHhhheeccccCcccCCC-CccccccchhhhhhhHhhhcccceehhhHhhhccCch-hhHHHHHHHHHHHHHHHHHHHHH
Q 017309 205 VLCVLFLGTIEGIGFHPT-GQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKALITCFALCVLIYGGVAVM 282 (373)
Q Consensus 205 ~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~-~~~~~i~~s~~~~~~~Y~~~g~~ 282 (373)
..........+..+.+.. ....++.++..++....|+|.|.+......+|+|||+ ++||++..+..++.++|+...+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~~~~~~~~lYil~~~~ 231 (410)
T PRK11021 152 VVAIWWAGDIKPADIPFPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGLLLAGLVYWACTVV 231 (410)
T ss_pred HHHHHHHcCCchhcCCCCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHHHHHHHHHHHHHHHHH
Confidence 211111111111111111 1123556788899999999999999999999999997 69999999999999999998765
Q ss_pred H
Q 017309 283 G 283 (373)
Q Consensus 283 g 283 (373)
.
T Consensus 232 ~ 232 (410)
T PRK11021 232 V 232 (410)
T ss_pred H
Confidence 3
No 24
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.64 E-value=1e-13 Score=134.13 Aligned_cols=239 Identities=10% Similarity=0.113 Sum_probs=161.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhHhhhHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcCcch
Q 017309 42 IAHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYG 121 (373)
Q Consensus 42 ~~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~ 121 (373)
.+||.|.++++...++.++|+|++.+|....+.|...+..+++.++........+.|.....|......+.+++.+||+.
T Consensus 6 ~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~~~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG~y~~~~~~~g~~~ 85 (445)
T PRK10644 6 DAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGGIAIYGWLVTIIGALGLSMVYAKMSSLDPSPGGSYAYARRCFGPFL 85 (445)
T ss_pred cCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHHHcCchH
Confidence 45689999999999999999999999998888775555667777777777788889988778888788888999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhhHHHHHHHHHH
Q 017309 122 RLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVAT 201 (373)
Q Consensus 122 ~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~ 201 (373)
++++.+..++.......+......++...+.+.... +.......+..+..+-....+..+...+++.+.....
T Consensus 86 gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ln~~gvk~~~~i~~i~~~~~ 158 (445)
T PRK10644 86 GYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKD-------PLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLA 158 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-------cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 999888877765555555555555555555442110 0011111122222222334456677777777665544
Q ss_pred HHHHHhhheecc--ccCcccCCC---CccccccchhhhhhhHhhhcccceehhhHhhhccCch-hhHHHHHHHHHHHHHH
Q 017309 202 ILIVLCVLFLGT--IEGIGFHPT---GQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKALITCFALCVLI 275 (373)
Q Consensus 202 ~~~~~~i~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~-~~~~~i~~s~~~~~~~ 275 (373)
++.++.+..... .++...... ....++..+..++....|+|.|.+......+|+|||+ +.||++..+..++.++
T Consensus 159 ~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPrai~~s~~i~~v~ 238 (445)
T PRK10644 159 LIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVC 238 (445)
T ss_pred HHHHHHHHHHHHHHhCchhccCCccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhHHHHHHHHHHHHH
Confidence 433322222111 111111110 0111234555677889999999999999999999997 6999999999999999
Q ss_pred HHHHHHHHHHHh
Q 017309 276 YGGVAVMGFLMF 287 (373)
Q Consensus 276 Y~~~g~~gy~~f 287 (373)
|..+.+......
T Consensus 239 Y~l~~~~~~~~~ 250 (445)
T PRK10644 239 YVLSSTAIMGMI 250 (445)
T ss_pred HHHHHHHHHhCC
Confidence 999887754433
No 25
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.63 E-value=3.9e-13 Score=130.84 Aligned_cols=234 Identities=12% Similarity=0.164 Sum_probs=156.5
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhHhhhHHHH-HHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcC
Q 017309 40 LPIAHGCSFTQTIFNGINVMAGVGLLSTPY-TVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFG 118 (373)
Q Consensus 40 ~~~~~~~s~~~~~~~l~~~~iG~Gil~lP~-~~~~~G~~g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G 118 (373)
.+.+|+.+.++..+..++.+||+|++..|. +.+++|...++.+++.+++.......+.|.....+...++.+.+++.+|
T Consensus 16 ~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp~~i~~~~i~~i~~~~~~~s~aEl~s~~~~~~~~~~ya~~~~g 95 (469)
T PRK11049 16 QSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGPSIIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDLLG 95 (469)
T ss_pred hhhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhC
Confidence 346778999999999999999999998765 6677776556667778888877788888886555666678889999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhhHHHHHHH
Q 017309 119 KYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGV 198 (373)
Q Consensus 119 ~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~ 198 (373)
|..++++.+..++.......+.....+.++..+.+.. . .+.+.++ .++++-+...++.+..++++.+..
T Consensus 96 ~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~~---------~-~~~~~~~-~~~~~~~iN~~g~~~~~~i~~~~~ 164 (469)
T PRK11049 96 PWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPDL---------S-DWVASLA-VVLLLLSLNLATVKMFGEMEFWFA 164 (469)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---------c-HHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 9999999998887775555556666666666554321 1 2222222 222222233345666666665544
Q ss_pred HHHHHHHHhhheecc------ccCc-----ccCC----CC-ccccccchhhhhhhHhhhcccceehhhHhhhccCch-hh
Q 017309 199 VATILIVLCVLFLGT------IEGI-----GFHP----TG-QVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KF 261 (373)
Q Consensus 199 ~~~~~~~~~i~~~~~------~~~~-----~~~~----~~-~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~-~~ 261 (373)
...+...+.++..+. .+.. .+.+ .. .+.++.++..++....|+|.|.+.+....+|+|||+ +.
T Consensus 165 ~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~i 244 (469)
T PRK11049 165 MIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPEKSL 244 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHhhHH
Confidence 333322222211110 0000 0100 00 012334578899999999999999999999999998 58
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 017309 262 TKALITCFALCVLIYGGVAVMGF 284 (373)
Q Consensus 262 ~~~i~~s~~~~~~~Y~~~g~~gy 284 (373)
||++..+...+.++|+.......
T Consensus 245 Prai~~~~~~~~~~y~l~~~~~~ 267 (469)
T PRK11049 245 PRAINSIPIRIIMFYVFALIVIM 267 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHe
Confidence 99998777778888887666544
No 26
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.63 E-value=1.8e-13 Score=133.36 Aligned_cols=237 Identities=12% Similarity=0.113 Sum_probs=156.3
Q ss_pred cCCCCCCHHHHHHHHHHHHHhHhhhHHHHHH-HhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcC
Q 017309 41 PIAHGCSFTQTIFNGINVMAGVGLLSTPYTV-KEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFG 118 (373)
Q Consensus 41 ~~~~~~s~~~~~~~l~~~~iG~Gil~lP~~~-~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G 118 (373)
+.+|+.+.++..+..++.++|+|++..|... +.+|.. .++.+++.+++.......+.|...+.|....+...+++.+|
T Consensus 11 ~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aGG~y~y~~~~~g 90 (471)
T PRK11387 11 QFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETGAFHVYAARYLG 90 (471)
T ss_pred hhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhcC
Confidence 4567899999999999999999999877654 677765 56677888888998999999998888988899999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhhHHHHHHH
Q 017309 119 KYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGV 198 (373)
Q Consensus 119 ~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~ 198 (373)
|+.++++.+..++.....+.......+..+..+.+.. ..+.+.++.. +++-+...++.+..++++....
T Consensus 91 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p~~----------~~~~~~~~~~-~~~~~in~~gvk~~~~~~~~~~ 159 (471)
T PRK11387 91 PATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFPQV----------PVWPWCLLFC-ALIFGLNVVSTRFFAEGEFWFS 159 (471)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcC----------cHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHH
Confidence 9999999888887766555444444554444433221 1122222222 2222333345555555543332
Q ss_pred HHHHHHHHhhhee------c--cccCcc----cCC---CCc-cccccchhhhhhhHhhhcccceehhhHhhhccCch-hh
Q 017309 199 VATILIVLCVLFL------G--TIEGIG----FHP---TGQ-VVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KF 261 (373)
Q Consensus 199 ~~~~~~~~~i~~~------~--~~~~~~----~~~---~~~-~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~-~~ 261 (373)
...+...+.++.. . .....+ .++ ..+ +.+..++..++....|+|.|.+.+....+|+|||+ ++
T Consensus 160 ~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~i 239 (471)
T PRK11387 160 LIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGETENPAKVI 239 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHhcChhhHH
Confidence 2222221111110 0 000000 000 000 11122466777788999999999999999999998 59
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 017309 262 TKALITCFALCVLIYGGVAVMGFLMFG 288 (373)
Q Consensus 262 ~~~i~~s~~~~~~~Y~~~g~~gy~~fg 288 (373)
||++..+...+.++|+...+......+
T Consensus 240 PrAi~~~~~~~~~~y~~~~~~~~~~~p 266 (471)
T PRK11387 240 PVAIRTTIARLVIFFVGTVLVLAALIP 266 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheecC
Confidence 999999999999999998765544443
No 27
>PRK15049 L-asparagine permease; Provisional
Probab=99.63 E-value=4.4e-13 Score=131.16 Aligned_cols=239 Identities=13% Similarity=0.101 Sum_probs=154.8
Q ss_pred cCCCCCCHHHHHHHHHHHHHhHhhhHHHH-HHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcCc
Q 017309 41 PIAHGCSFTQTIFNGINVMAGVGLLSTPY-TVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGK 119 (373)
Q Consensus 41 ~~~~~~s~~~~~~~l~~~~iG~Gil~lP~-~~~~~G~~g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~ 119 (373)
+.+|+.+.++..+..++.+||+|++..|. +.+++|..+++.+++.+++....+..+.|.....|...+....+++.+||
T Consensus 25 ~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp~~il~~li~~i~~~~v~~slaELas~~P~aGg~y~y~~~~~G~ 104 (499)
T PRK15049 25 GYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGPALALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREFLGE 104 (499)
T ss_pred hhhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCc
Confidence 46678999999999999999999998777 66777766777888899999999999999988889999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhhHHHHHHHH
Q 017309 120 YGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVV 199 (373)
Q Consensus 120 ~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~ 199 (373)
+.++++.+..++.............+.+...+ +.+. + . ..+.+.. ...+++-....++.+...+++.....
T Consensus 105 ~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~-~~~~----~--~-~~~~~~~-~~~~l~~~iN~~gvk~~~~i~~~~~~ 175 (499)
T PRK15049 105 KAAYVAGWMYFINWAMTGIVDITAVALYMHYW-GAFG----G--V-PQWVFAL-AALTIVGTMNMIGVKWFAEMEFWFAL 175 (499)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCC----C--C-cHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998887765444443333344443322 1110 0 1 1222222 22222223333455666665554433
Q ss_pred HHHHHHHhhh---eeccccCccc--CC--------CC--ccccccchhhhhhhHhhhcccceehhhHhhhccCch-hhHH
Q 017309 200 ATILIVLCVL---FLGTIEGIGF--HP--------TG--QVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTK 263 (373)
Q Consensus 200 ~~~~~~~~i~---~~~~~~~~~~--~~--------~~--~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~-~~~~ 263 (373)
..+..++.++ ......+.+. .. +. .+.++.++..++....|+|.|.+.+....+|+|||+ +.||
T Consensus 176 iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~r~iPr 255 (499)
T PRK15049 176 IKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKDPQTMVPK 255 (499)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcChhhHHHH
Confidence 2222211111 1110111100 00 00 011122234455678999999999999999999998 5999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 017309 264 ALITCFALCVLIYGGVAVMGFLMFG 288 (373)
Q Consensus 264 ~i~~s~~~~~~~Y~~~g~~gy~~fg 288 (373)
++..++..+.++|+..........+
T Consensus 256 Ai~~~~~~i~~~yi~~~~~~~~~~p 280 (499)
T PRK15049 256 AINSVIWRIGLFYVGSVVLLVMLLP 280 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHheecc
Confidence 9999999999999887765544443
No 28
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.62 E-value=3.6e-13 Score=131.32 Aligned_cols=238 Identities=14% Similarity=0.116 Sum_probs=164.8
Q ss_pred CCCCCHHHHHHHHHHHHHhHhhhHHHHHHHhhcH-H-HHHHHHHHHHHHHHHHHHHHHhhhhCCC-CCChHHHHHHhcCc
Q 017309 43 AHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGW-A-SLVVLLLFAVVCCYTASLMRYCFESKEG-ITTYPDIGEAAFGK 119 (373)
Q Consensus 43 ~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~-~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~-~~~y~~l~~~~~G~ 119 (373)
+|+.|.+++++..+++++|+|++.+|....+.|- . .++.+++.++........+.|...+.|+ .....+.+++.+||
T Consensus 6 ~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~~G~ 85 (473)
T TIGR00905 6 SKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGGIYAYAREGFGP 85 (473)
T ss_pred CCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHccc
Confidence 5679999999999999999999999998876553 3 4566788888888888899999877888 77788889999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHH-HHHHHHHHHhhhcccCCchhhHHHHHHH
Q 017309 120 YGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLF-GILTALIVLPTIWLRDLRVISYLSATGV 198 (373)
Q Consensus 120 ~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~i~~~i~~pl~~~~~l~~l~~~s~~~~ 198 (373)
+.+++..+..++.......++.....+++..+.+....+ .....+ ..+...+.+-....++.+..++++.+..
T Consensus 86 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~------~~~~~~~~~~~~~~~~~~ln~~Gi~~~~~i~~~~~ 159 (473)
T TIGR00905 86 YIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGSG------NPVPSILGASVLLWVFTFLVLRGVRQAAFINTITT 159 (473)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC------CcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 999999998877666666667777777777766532100 011111 1222222233345557777777777666
Q ss_pred HHHHHHHHhhheecc--ccCccc----CCC-Cc--cccccchhhhhhhHhhhcccceehhhHhhhccCchhhHHHHHHHH
Q 017309 199 VATILIVLCVLFLGT--IEGIGF----HPT-GQ--VVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITCF 269 (373)
Q Consensus 199 ~~~~~~~~~i~~~~~--~~~~~~----~~~-~~--~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~i~~s~ 269 (373)
...+...+.++.... .++.+. .+. .+ ...+..+..++....|+|.|.+......+|+||+|+.+|++..+.
T Consensus 160 ~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~~r~iPrai~~~~ 239 (473)
T TIGR00905 160 IAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKNKSDVGKATVLGT 239 (473)
T ss_pred HHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccccchHHHHHHH
Confidence 554433322221111 111111 111 01 112345667788899999999999999999999557999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 017309 270 ALCVLIYGGVAVMGFLM 286 (373)
Q Consensus 270 ~~~~~~Y~~~g~~gy~~ 286 (373)
.++.++|+.........
T Consensus 240 ~i~~~~Yil~~~~~~~~ 256 (473)
T TIGR00905 240 LGALVIYILITLLSLGV 256 (473)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 99999999887764443
No 29
>TIGR00909 2A0306 amino acid transporter.
Probab=99.62 E-value=1.8e-13 Score=132.04 Aligned_cols=291 Identities=16% Similarity=0.180 Sum_probs=191.5
Q ss_pred CCCCCHHHHHHHHHHHHHhHhhhHHHHHHHh-hcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcCcch
Q 017309 43 AHGCSFTQTIFNGINVMAGVGLLSTPYTVKE-AGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYG 121 (373)
Q Consensus 43 ~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~-~G~~g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~ 121 (373)
+|+.|.++.++..+++++|+|++.+|..... .|...++.+++.++........+.|...+.|+.....+..++.+||+.
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~l~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~~~ 81 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGPAVILSFVLAGLTALFIALVYAELAAMLPVAGSPYTYAYEAMGELT 81 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcceeeHHHHhCcHH
Confidence 5689999999999999999999999976654 444466677778888888888999998778887788888999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCccc----Cc-hhHHHHHHHHHHHhhhcccCCchhhHHHHH
Q 017309 122 RLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQL----DS-THLFGILTALIVLPTIWLRDLRVISYLSAT 196 (373)
Q Consensus 122 ~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~----~~-~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~ 196 (373)
+++..+..++........+....++++..+++....+...... +. ...+..+...+.+-....++.+..++++.+
T Consensus 82 g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~~~~~v 161 (429)
T TIGR00909 82 AFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKESGKVNDI 161 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 9999999888887788888888888887776521111000000 00 011122233333334455678888888887
Q ss_pred HHHHHHHHHHhhheeccc--cCcccCCCCccccccchhhhhhhHhhhcccceehhhHhhhccCch-hhHHHHHHHHHHHH
Q 017309 197 GVVATILIVLCVLFLGTI--EGIGFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKALITCFALCV 273 (373)
Q Consensus 197 ~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~-~~~~~i~~s~~~~~ 273 (373)
.....+..++.++..... +..++++ ..+.++.++..++....|+|.|.+......+|+|||+ +.+|++..+..++.
T Consensus 162 ~~~~~i~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~ai~~~~~~~~ 240 (429)
T TIGR00909 162 LVVLKVAALLLFAALGAIHFASNNYTP-FMPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPKAIILSLIVVT 240 (429)
T ss_pred HHHHHHHHHHHhhhHHHhhCcHHhcCC-CCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccHHHHHHHHHHH
Confidence 766655544332222211 1112221 1123445678889999999999999999999999996 68999999999999
Q ss_pred HHHHHHHHHHHHHhcCCc-------hhhhhhcCCCchHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHH
Q 017309 274 LIYGGVAVMGFLMFGQGT-------LSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEEL 335 (373)
Q Consensus 274 ~~Y~~~g~~gy~~fg~~~-------~~~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~ 335 (373)
++|+..........+.+. ...+..+.. ++....+..+..+++.+.+.--......+.+...
T Consensus 241 v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~ 308 (429)
T TIGR00909 241 LLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLG-QGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAM 308 (429)
T ss_pred HHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998765543322110 011222221 2223334445556666666655555554544443
No 30
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.60 E-value=1.5e-12 Score=126.69 Aligned_cols=239 Identities=14% Similarity=0.157 Sum_probs=162.1
Q ss_pred CCCCHHHHHHHHHHHHHhHhhhHHHHHHH-hhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCC-ChHHHHHHhcCcc
Q 017309 44 HGCSFTQTIFNGINVMAGVGLLSTPYTVK-EAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGIT-TYPDIGEAAFGKY 120 (373)
Q Consensus 44 ~~~s~~~~~~~l~~~~iG~Gil~lP~~~~-~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~-~y~~l~~~~~G~~ 120 (373)
||.|.++.+...+++++|+|++.+|.... .+|.. .++.+++.++........+.|...+.|+.. ...+.+++.+||+
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y~y~~~~fG~~ 80 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDGGVYSYAKAGFGPF 80 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcCcH
Confidence 47899999999999999999999998764 55654 555678888888888899999887777754 7778899999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchh-HHHHHHHHHHHhhhcccCCchhhHHHHHHHH
Q 017309 121 GRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTH-LFGILTALIVLPTIWLRDLRVISYLSATGVV 199 (373)
Q Consensus 121 ~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~ 199 (373)
.+++..+..++.......++.....+.+..+.+....+ .... ....+..+..+-....+..+..++++.+...
T Consensus 81 ~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~------~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~~i~~~ 154 (468)
T TIGR03810 81 MGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGGG------NNPPSIIGASVLLWCVHFLVLRGVEGAAFINTITTI 154 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC------CcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 99999998887766556667666666666555432110 0111 1112222222223334677777777776655
Q ss_pred HHHHHHHhhheec--cccCccc-----CCCC----ccccccchhhhhhhHhhhcccceehhhHhhhccCchhhHHHHHHH
Q 017309 200 ATILIVLCVLFLG--TIEGIGF-----HPTG----QVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITC 268 (373)
Q Consensus 200 ~~~~~~~~i~~~~--~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~i~~s 268 (373)
..+...+.++... ..++... +... ....+.++..++....|+|.|.+....+.+|.||+|+.+|++..+
T Consensus 155 ~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~k~ip~ai~~~ 234 (468)
T TIGR03810 155 AKLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEKRSDVGKATVIG 234 (468)
T ss_pred HHHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccCcccchHHHHHH
Confidence 4443322222111 1111111 1100 011123455778889999999999999999999988999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 017309 269 FALCVLIYGGVAVMGFLMFG 288 (373)
Q Consensus 269 ~~~~~~~Y~~~g~~gy~~fg 288 (373)
...+.++|..+.+..+...+
T Consensus 235 ~~~v~~lY~l~~~~~~g~~~ 254 (468)
T TIGR03810 235 LIGVLAIYVLVSVLSYGIMT 254 (468)
T ss_pred HHHHHHHHHHHHHHHHhCcC
Confidence 99999999998887665443
No 31
>PRK10836 lysine transporter; Provisional
Probab=99.59 E-value=1.1e-12 Score=128.36 Aligned_cols=237 Identities=13% Similarity=0.120 Sum_probs=150.7
Q ss_pred cCCCCCCHHHHHHHHHHHHHhHhhhHHHH-HHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcC
Q 017309 41 PIAHGCSFTQTIFNGINVMAGVGLLSTPY-TVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFG 118 (373)
Q Consensus 41 ~~~~~~s~~~~~~~l~~~~iG~Gil~lP~-~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G 118 (373)
+.+|+.+.++..+..++.+||+|++..|. +.+++|.. .++.+++.+++....+..+.|...+.|........+++.+|
T Consensus 12 ~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sGg~y~y~~~~~g 91 (489)
T PRK10836 12 GLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYVE 91 (489)
T ss_pred cccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHcC
Confidence 45678999999999999999999999887 55777876 67788999999999999999999889999999999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhhHHHHHHH
Q 017309 119 KYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGV 198 (373)
Q Consensus 119 ~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~ 198 (373)
+..++++.+..++................+..+.+. . ..+.+..+. ++++-.....+.+..+.++....
T Consensus 92 ~~~gf~~Gw~~~~~~~~~~a~~~~a~~~~~~~~~~~---------~-~~~~~~~~~-~~~~~~lN~~gv~~~~~~~~~~~ 160 (489)
T PRK10836 92 EGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWFPD---------T-PGWIWSALF-LGVIFLLNYISVRGFGEAEYWFS 160 (489)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC---------C-chHHHHHHH-HHHHHHHHHHcchhhhhhHHHHH
Confidence 999999988777654333222222222223332221 0 111122221 22222223334554444443322
Q ss_pred HHHHHHHH------hhheeccccCc------ccCCCC--ccccccchhhhhhhHhhhcccceehhhHhhhccCch-hhHH
Q 017309 199 VATILIVL------CVLFLGTIEGI------GFHPTG--QVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTK 263 (373)
Q Consensus 199 ~~~~~~~~------~i~~~~~~~~~------~~~~~~--~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~-~~~~ 263 (373)
...+...+ .+.......+. +++... ...++..+........|+|.|.+.+....+|+|||+ +.||
T Consensus 161 ~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iPr 240 (489)
T PRK10836 161 LIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESEDPAKNIPR 240 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHhcCHHHHHHH
Confidence 22211111 11111111110 111100 111223344455566799999999999999999997 6999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 017309 264 ALITCFALCVLIYGGVAVMGFLMFG 288 (373)
Q Consensus 264 ~i~~s~~~~~~~Y~~~g~~gy~~fg 288 (373)
++..++..+.++|+..........+
T Consensus 241 Ai~~~~~~v~~~Yvl~~~~~~~~vp 265 (489)
T PRK10836 241 AVRQVFWRILLFYVFAILIISLIIP 265 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHheecC
Confidence 9999999999999988766544443
No 32
>PRK10746 putative transport protein YifK; Provisional
Probab=99.59 E-value=1.8e-12 Score=125.76 Aligned_cols=283 Identities=14% Similarity=0.168 Sum_probs=179.4
Q ss_pred cCCCCCCHHHHHHHHHHHHHhHhhhHHHH-HHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcCc
Q 017309 41 PIAHGCSFTQTIFNGINVMAGVGLLSTPY-TVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGK 119 (373)
Q Consensus 41 ~~~~~~s~~~~~~~l~~~~iG~Gil~lP~-~~~~~G~~g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~ 119 (373)
+.+|+.+.++..+..++.+||+|++..|. +.+.+|...++.+++.+++.+.....+.|.....|...++.+.+++.+||
T Consensus 7 ~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp~~~l~~~i~g~~~~~v~~~~aEl~~~~P~sGg~~~y~~~~~g~ 86 (461)
T PRK10746 7 ELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGPSVLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHRYMSP 86 (461)
T ss_pred HHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhCc
Confidence 34568999999999999999999998666 55677765666778888888999999999988889999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhhHHHHHHHH
Q 017309 120 YGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVV 199 (373)
Q Consensus 120 ~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~ 199 (373)
+.++++.+..++.......+.....+.+++.+.+.. + .+.+..+.. +.+-....++.+..+.++.....
T Consensus 87 ~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~~---------~-~~~~~~~~~-~~~~~lN~~gv~~~~~~e~~~~~ 155 (461)
T PRK10746 87 FFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPEM---------A-QWIPALIAV-ALVALANLAAVRLYGEIEFWFAM 155 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC---------c-hHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999998888877666777777777776655431 1 222222222 22222233344555444433222
Q ss_pred HHHHHHHh-------hheeccccC---cccCC---CC--ccccccchhhhhhhHhhhcccceehhhHhhhccCch-hhHH
Q 017309 200 ATILIVLC-------VLFLGTIEG---IGFHP---TG--QVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTK 263 (373)
Q Consensus 200 ~~~~~~~~-------i~~~~~~~~---~~~~~---~~--~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~-~~~~ 263 (373)
..+..++. +.......+ ...++ +. .+.++.++..++....|+|.|.+.+....+|+|||+ ++||
T Consensus 156 ~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~k~iP~ 235 (461)
T PRK10746 156 IKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQVTLRS 235 (461)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChhhHHHH
Confidence 21111111 111111110 01111 11 122345677899999999999999999999999997 6999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchh----h---hhhcCCCchHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHH
Q 017309 264 ALITCFALCVLIYGGVAVMGFLMFGQGTLS----Q---ITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEEL 335 (373)
Q Consensus 264 ~i~~s~~~~~~~Y~~~g~~gy~~fg~~~~~----~---il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~ 335 (373)
++..++..+.++|+...+......+.+..+ . ...+... +....+..++.+++.+.+.--.++...+.+..+
T Consensus 236 Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~-~~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~~ 313 (461)
T PRK10746 236 AVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGI-TAAAGIINFVVLTAALSGCNSGMYSCGRMLYAL 313 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998765544444332211 0 1111111 112233444455555555555555555555544
No 33
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.59 E-value=1.8e-12 Score=119.87 Aligned_cols=284 Identities=17% Similarity=0.183 Sum_probs=206.2
Q ss_pred CCCHHHHHHHHHHHHHhHhhhHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcCcchhhH
Q 017309 45 GCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLL 124 (373)
Q Consensus 45 ~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~ 124 (373)
|.|..|.+..+..+++|+|++.+|....+.+--|++..++.+.......+++.+..+ +.++.+..|+.++.+|||.+++
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~d~Wi~~ll~~~~~l~~~~l~~~l~~-~~p~~~l~~~~~~~~Gk~lg~i 79 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQAGDAWISVLLGGLIGLLLALLIYYLLK-RFPGKTLVEISEKLFGKWLGKI 79 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHhCcHHHHH
Confidence 578899999999999999999999988655412666666666666666667777765 5566899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhhHHHHHHHHHHHHH
Q 017309 125 ISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILI 204 (373)
Q Consensus 125 ~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~ 204 (373)
+.....++............++.++...-.. . ..+......++..-....++++.+++.+.+.....+..
T Consensus 80 i~~~~~l~~l~~~~~~lr~~~~~i~~~~lp~---------T-P~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~~~i~ 149 (320)
T PF03845_consen 80 INLLYILYFLLISALVLREFSEFIKTYLLPE---------T-PIWVIILLFLLVAAYAARKGIEVIARVAEILFPIFLIL 149 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---------C-CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 9999999998888888988999888754221 1 12333334444444566778999999777665555444
Q ss_pred HHhhheeccccCcccCC--CCccccccchhhhhhhHhhhcccceehhhHhhhccCchhhHHHHHHHHHHHHHHHHHHHHH
Q 017309 205 VLCVLFLGTIEGIGFHP--TGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVAVM 282 (373)
Q Consensus 205 ~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~i~~s~~~~~~~Y~~~g~~ 282 (373)
.+.+.. ...++.+++. +....++.++.++.....+.|.+...+..+.+.+|+|+|.+|....+...++++|...-+.
T Consensus 150 ~~~i~~-~~~~~~~~~~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 228 (320)
T PF03845_consen 150 LLLILL-LSIPNIDWDNLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKKKLKKSLLIAILISGLFLLFIIFI 228 (320)
T ss_pred HHHHHH-HhcccCCHHHeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333332 2233344443 3335666788888888999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCchhhh-------hhcCCCch---HHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHcCCCC
Q 017309 283 GFLMFGQGTLSQI-------TLNMPPHA---FASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGI 340 (373)
Q Consensus 283 gy~~fg~~~~~~i-------l~n~~~~~---~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~ 340 (373)
....||.+..++. ....+-.+ ..-.+.........+.+..+.++...+.+.+.++.++
T Consensus 229 ~i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~~f~~~~ 296 (320)
T PF03845_consen 229 TIGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQLFKLKD 296 (320)
T ss_pred HHHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999996543321 11111011 1112223445667778888899999999999997654
No 34
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.58 E-value=7.4e-12 Score=121.61 Aligned_cols=232 Identities=14% Similarity=0.205 Sum_probs=158.9
Q ss_pred cCCCCCCHHHHHHHHHHHHHhHhhhHHHHH-HHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcCc
Q 017309 41 PIAHGCSFTQTIFNGINVMAGVGLLSTPYT-VKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGK 119 (373)
Q Consensus 41 ~~~~~~s~~~~~~~l~~~~iG~Gil~lP~~-~~~~G~~g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~ 119 (373)
+.+|+.+.++.++..++.++|+|++.+|.. .+.+|...++.+++.++........+.|...+.|......+.+++.+||
T Consensus 6 ~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~Gg~y~y~~~~~G~ 85 (457)
T PRK10580 6 KLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPSVLLAYIIGGVAAYIIMRALGEMSVHNPAASSFSRYAQENLGP 85 (457)
T ss_pred cccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCc
Confidence 456789999999999999999999998775 4566655778888999999999999999988888888888899999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhhHHHHHHHH
Q 017309 120 YGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVV 199 (373)
Q Consensus 120 ~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~ 199 (373)
..++++.+..++.............+.++..+.+.. + .+.+.+. .++++-....++.+...+++.....
T Consensus 86 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-~~~~~~~-~~~l~~~ln~~gv~~~~~~~~~~~~ 154 (457)
T PRK10580 86 LAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPTV---------P-HWIWVLS-VVLIICAVNLMSVKVFGELEFWFSF 154 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC---------C-hHHHHHH-HHHHHHHHHHccchhHHHHHHHHHH
Confidence 999999998887766556665566666666554321 1 1222222 2222333344566666666654333
Q ss_pred HHHHHHHhh-------heeccccC---cc----cCCC-CccccccchhhhhhhHhhhcccceehhhHhhhccCch-hhHH
Q 017309 200 ATILIVLCV-------LFLGTIEG---IG----FHPT-GQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTK 263 (373)
Q Consensus 200 ~~~~~~~~i-------~~~~~~~~---~~----~~~~-~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~-~~~~ 263 (373)
..+...+.+ ......++ .+ +++. ..+.++.++..++....|+|.|.+......+|+|||+ +.||
T Consensus 155 ~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~k~iPr 234 (457)
T PRK10580 155 FKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIPR 234 (457)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhHHHH
Confidence 322221111 11111110 00 1110 1122234567788889999999999999999999998 5899
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 017309 264 ALITCFALCVLIYGGVAVMG 283 (373)
Q Consensus 264 ~i~~s~~~~~~~Y~~~g~~g 283 (373)
++..+...+.++|.......
T Consensus 235 Ai~~~~~~~~~~y~~~~~~~ 254 (457)
T PRK10580 235 AINSVPMRILVFYVGTLFVI 254 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99988888888888775544
No 35
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.56 E-value=5e-12 Score=122.60 Aligned_cols=230 Identities=11% Similarity=0.158 Sum_probs=158.0
Q ss_pred cCCCCCCHHHHHHHHHHHHHhHhhhHHHHHH-HhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcCc
Q 017309 41 PIAHGCSFTQTIFNGINVMAGVGLLSTPYTV-KEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGK 119 (373)
Q Consensus 41 ~~~~~~s~~~~~~~l~~~~iG~Gil~lP~~~-~~~G~~g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~ 119 (373)
+.+|+.+.++..+..++.+||+|++..|... +++|...++.+++.++.....+..+.|...+.|...++.+.+++.+||
T Consensus 9 ~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aGg~y~~~~~~~g~ 88 (456)
T PRK10238 9 QLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGPGIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKYWGS 88 (456)
T ss_pred hhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCc
Confidence 3567899999999999999999999888765 455543666678888888889999999988889999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhhHHHHHHHH
Q 017309 120 YGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVV 199 (373)
Q Consensus 120 ~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~ 199 (373)
+.++++.+..++.....+.+.....+++++.+.+.. ..+.+..+.. .++-.....+.+...+++.....
T Consensus 89 ~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~~----------~~~~~~~i~~-~~~~~lN~~gv~~~~~~~~~~~~ 157 (456)
T PRK10238 89 FAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPEI----------PTWVSAAVFF-VVINAINLTNVKVFGEMEFWFAI 157 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcC----------cHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999998888888888877888887664421 1222222222 22222233355566666554433
Q ss_pred HHHHHHHhh-----he-eccccCc--ccCC----CCc-cccccchhhhhhhHhhhcccceehhhHhhhccCch-hhHHHH
Q 017309 200 ATILIVLCV-----LF-LGTIEGI--GFHP----TGQ-VVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKAL 265 (373)
Q Consensus 200 ~~~~~~~~i-----~~-~~~~~~~--~~~~----~~~-~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~-~~~~~i 265 (373)
..+..++.+ .+ ....... ...+ ... +..+.++..+++...|+|.|.+......+|+|||+ +.||++
T Consensus 158 iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~r~iPrAi 237 (456)
T PRK10238 158 IKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKAT 237 (456)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcChhhHHHHHH
Confidence 333222111 11 1100110 0100 001 11233555778889999999999999999999997 599999
Q ss_pred HHHHHHHHHHHHHHHH
Q 017309 266 ITCFALCVLIYGGVAV 281 (373)
Q Consensus 266 ~~s~~~~~~~Y~~~g~ 281 (373)
..+.....+.|...-.
T Consensus 238 ~~~~~~i~~~y~~~~~ 253 (456)
T PRK10238 238 NQVIYRILIFYIGSLA 253 (456)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888766533
No 36
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=99.55 E-value=4.4e-13 Score=123.97 Aligned_cols=317 Identities=17% Similarity=0.219 Sum_probs=209.6
Q ss_pred cccCCCCCCHHHHHHHHHHHHHhHhhh-HHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhc
Q 017309 39 ELPIAHGCSFTQTIFNGINVMAGVGLL-STPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAF 117 (373)
Q Consensus 39 ~~~~~~~~s~~~~~~~l~~~~iG~Gil-~lP~~~~~~G~~g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~ 117 (373)
+.+.+|+.+.++.-+.-++..||+|.+ +-..+.+.+|.--++...+++++.+.-++.+.|+..++|...++.+.+++.+
T Consensus 8 ~~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPSvlLaY~I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a~~~l 87 (462)
T COG1113 8 EQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPSVLLAYLIAGIFVFLIMRALGEMLVANPVSGSFSDYARKYL 87 (462)
T ss_pred chhhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHh
Confidence 344567888899999999999999974 6888999999777777899999999999999999888899999999999999
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHh--hhcccCCchhhH-HH
Q 017309 118 GKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLP--TIWLRDLRVISY-LS 194 (373)
Q Consensus 118 G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~p--l~~~~~l~~l~~-~s 194 (373)
|+|++++..+..++.....+.+-+..++.+++.++++. +.|.+.+...+++.. +...|...++-+ ++
T Consensus 88 G~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~v----------P~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfA 157 (462)
T COG1113 88 GPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPDV----------PQWVFALAAVVLLLAVNLISVKVFGELEFWFA 157 (462)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998764 134444443333332 334444444332 23
Q ss_pred HHHHHHHHHHHHh---hheeccccCc---ccCC-----CCccccccchhhhhhhHhhhcccceehhhHhhhccCchh-hH
Q 017309 195 ATGVVATILIVLC---VLFLGTIEGI---GFHP-----TGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTK-FT 262 (373)
Q Consensus 195 ~~~~~~~~~~~~~---i~~~~~~~~~---~~~~-----~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~-~~ 262 (373)
.+-+...+.+++. ++......+. +.++ .-.+.++.++..++.+..|||.|.+.+-....|-|||+| .+
T Consensus 158 lIKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k~ip 237 (462)
T COG1113 158 LIKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEKAIP 237 (462)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhhHHH
Confidence 3222222221111 1111111111 1111 112455677889999999999999999999999999984 77
Q ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHhcCCchhhhh--hcCCCchHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHH
Q 017309 263 KALITCFALCVLIYGGV-----AVMGFLMFGQGTLSQIT--LNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEEL 335 (373)
Q Consensus 263 ~~i~~s~~~~~~~Y~~~-----g~~gy~~fg~~~~~~il--~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~ 335 (373)
|++..-..-..++|+.- .+..+-.++++..+-+. .... -+....+.++....+.+.+.---++..-+.+..+
T Consensus 238 kAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iG-i~~Aa~i~N~VVLtAa~S~~NSglystsRmL~~l 316 (462)
T COG1113 238 KAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIG-IPFAAGIMNFVVLTAALSALNSGLYSTSRMLYSL 316 (462)
T ss_pred HHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcC-CcccccceeEEEeechhhcccccccccchHHHHH
Confidence 88776666666666543 33344444443333222 1111 1122223334334445555555666666666665
Q ss_pred cCCCC----------CcchhhHHHHHHHHHHHHHHHHHhcC
Q 017309 336 LPAGI----------SNNYWCFILLRTALVFSSVCAAFLLP 366 (373)
Q Consensus 336 ~~~~~----------~~~~~~~~~~~~~~~~~~~~iA~~vp 366 (373)
-.+++ ..-.+.-+.......++.+++....|
T Consensus 317 a~~g~APk~~~klsk~gVP~~ai~~s~~~~~~~V~Lny~~P 357 (462)
T COG1113 317 AKQGDAPKAFAKLSKRGVPVNAILLSAVVLLLGVVLNYILP 357 (462)
T ss_pred hhcCcccHhHhhccccCCCHHHHHHHHHHHHHHHHHHhhcc
Confidence 42221 11123446677777777788888777
No 37
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.53 E-value=3.4e-13 Score=126.61 Aligned_cols=240 Identities=15% Similarity=0.169 Sum_probs=167.2
Q ss_pred cccCCCCCCHHHHHHHHHHHHHhHhhhHHHHHH-HhhcHH--HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHH
Q 017309 39 ELPIAHGCSFTQTIFNGINVMAGVGLLSTPYTV-KEAGWA--SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEA 115 (373)
Q Consensus 39 ~~~~~~~~s~~~~~~~l~~~~iG~Gil~lP~~~-~~~G~~--g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~ 115 (373)
+.+.+||.|.+.++..+++.++|+|++..|..+ +++|-+ +++.++++++++...+.+..|.....|++........+
T Consensus 7 ~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGgd~ayi~~ 86 (479)
T KOG1287|consen 7 EVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGGDYAYISE 86 (479)
T ss_pred cccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcchhhHHH
Confidence 344567899999999999999999999999987 455554 77778899999999999999997666666655566888
Q ss_pred hcCcchhhHHHHHHHHHHHHHH-HHHHHHhhhh-hhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhhHH
Q 017309 116 AFGKYGRLLISVLLYTELYSYC-VEFIILEGDN-LTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYL 193 (373)
Q Consensus 116 ~~G~~~~~~~~i~~~~~~~g~~-~~y~i~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~ 193 (373)
+||+..+++..+.-.+...... ..+.+.++++ ++...+. . ...+...-++..+++..+... |....++.
T Consensus 87 afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~-c-------~~p~~~~~lla~~~l~~lt~~-n~~~V~~a 157 (479)
T KOG1287|consen 87 AFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPL-C-------DVPRVASKLLAAALLVLLTLI-NSFSVKWA 157 (479)
T ss_pred HhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCC-C-------CCchHHHHHHHHHHHHHHHHH-hhhhhhHH
Confidence 9999877776555544444444 7788888888 6666552 1 111333334444444444444 55555544
Q ss_pred HH---HHHHHHHHHHHhhheecc----ccCcc---cC-CCCccccccchhhhhhhHhhhcccceehhhHhhhccCch-hh
Q 017309 194 SA---TGVVATILIVLCVLFLGT----IEGIG---FH-PTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KF 261 (373)
Q Consensus 194 s~---~~~~~~~~~~~~i~~~~~----~~~~~---~~-~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~-~~ 261 (373)
+. +..++.+.....++..+. .+..+ .+ ......+..++..++-...|||.|+..+..+.+|+|||+ .+
T Consensus 158 ~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEiknP~ktL 237 (479)
T KOG1287|consen 158 TRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPRRTL 237 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchHhhcCccccc
Confidence 44 333443333333332221 11111 11 233345556788999999999999999999999999997 59
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017309 262 TKALITCFALCVLIYGGVAVMGFLMF 287 (373)
Q Consensus 262 ~~~i~~s~~~~~~~Y~~~g~~gy~~f 287 (373)
|+++..++.++++.|+++-+..+.+-
T Consensus 238 P~Ai~isi~lvt~iYil~NvAy~~vl 263 (479)
T KOG1287|consen 238 PRAILISIPLVTVIYVLVNVAYFTVL 263 (479)
T ss_pred hHHHHHhhHHHHHHHHHhHhheeEec
Confidence 99999999999999999877655444
No 38
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.52 E-value=6.9e-12 Score=121.38 Aligned_cols=230 Identities=14% Similarity=0.108 Sum_probs=157.7
Q ss_pred cCCCCCCHHHHHHHHHHHHHhHhhhHHHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcCc
Q 017309 41 PIAHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGK 119 (373)
Q Consensus 41 ~~~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~ 119 (373)
+.+|+.|.++.+...++.++|....+.+...++.|+. -.+..++.++........+.|...+.|........+++.+||
T Consensus 4 ~l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~Gg~y~~~~~~~G~ 83 (442)
T TIGR00908 4 QLKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAGGGYGFARRAFGP 83 (442)
T ss_pred hhhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCc
Confidence 3567899999999999999984345568888999987 445566677777777788999988888888889999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhhHHHHHHHH
Q 017309 120 YGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVV 199 (373)
Q Consensus 120 ~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~ 199 (373)
+.+++..+..++........+....++++..+.+... .+...+ .....+-+...+..+..++++.....
T Consensus 84 ~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~~----------~~~~~~-~~~~~~~~ln~~g~~~~~~i~~~~~~ 152 (442)
T TIGR00908 84 WGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPVGP----------GWLAAL-VFYIVFIGINILGVGEAAKLEFVVTA 152 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc----------hhHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 9999999988888877788888888998887765321 122222 22222223334456666666654443
Q ss_pred HHHHHHHhhheecc--ccCcccCC----CCc---cccccchhhhhhhHhhhcccceehhhHhhhccCch-hhHHHHHHHH
Q 017309 200 ATILIVLCVLFLGT--IEGIGFHP----TGQ---VVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKALITCF 269 (373)
Q Consensus 200 ~~~~~~~~i~~~~~--~~~~~~~~----~~~---~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~-~~~~~i~~s~ 269 (373)
..+..++.++.... .+..+... +.. +..+.++..++....|+|.|.+......+|+|||+ +.+|++..+.
T Consensus 153 ~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iprai~~s~ 232 (442)
T TIGR00908 153 VAIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKRDIPRGLIGAI 232 (442)
T ss_pred HHHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHH
Confidence 33322221111111 00000000 000 11223556777788999999999999999999997 6999999999
Q ss_pred HHHHHHHHHHHH
Q 017309 270 ALCVLIYGGVAV 281 (373)
Q Consensus 270 ~~~~~~Y~~~g~ 281 (373)
.++.++|+....
T Consensus 233 ~~~~~~~~~~~~ 244 (442)
T TIGR00908 233 LTLLALAAGILV 244 (442)
T ss_pred HHHHHHHHHHHH
Confidence 998888887644
No 39
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.51 E-value=2.3e-12 Score=124.17 Aligned_cols=284 Identities=13% Similarity=0.172 Sum_probs=185.9
Q ss_pred CCHHHHHHHHHHHHHhHhhhHHHHHHHhhcHHHHHHHHHHHHHH-HHHHHHHHHhhhhCCCCCChHHHHHHhcCcchhhH
Q 017309 46 CSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVC-CYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLL 124 (373)
Q Consensus 46 ~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~g~i~~~~~~~~~-~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~ 124 (373)
.|+++++...++.++|+|++..| ...+.|...++..++.+.+. ......+.|..++.|+.......+++.+||+.+++
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~~~~~~~i~~~~~~l~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~ 79 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP-AAASAGPSAILAWIIAALLFFLPIALSYAELSSAYPSAGGIYVWVSRAFGPFWGFI 79 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH-HHTCTGCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHH-HHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCeeeehhhhcccccchhc
Confidence 37899999999999999999999 77777766666666666665 57777888887778899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhhHHHHHHHHHHH-H
Q 017309 125 ISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATI-L 203 (373)
Q Consensus 125 ~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~-~ 203 (373)
..+...+.......++.....+++...+.... .+..+ ......+..++.+.....++.+..++++.......+ .
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~ 154 (426)
T PF13520_consen 80 VGWLYWVAYILSLASVASSFASYLLSLFGPDL---NPSPW--PQFLIAIILILLFTLLNLLGIKLSGKIQNILTVIKIVI 154 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGG---TCSHH--HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred ccceeEEEeeccccccccchhhhhhhcccccc---ccccc--hheeeeecccccceEeeechhhhhhhhhhhhhhhhhhh
Confidence 99999888888888888888888877653210 00000 112222222333333444577777777776665555 2
Q ss_pred HHHhhheecc----ccCccc----CCCCccccccchhhhhhhHhhhcccceehhhHhhhccCchhhHHHHHHHHHHHHHH
Q 017309 204 IVLCVLFLGT----IEGIGF----HPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITCFALCVLI 275 (373)
Q Consensus 204 ~~~~i~~~~~----~~~~~~----~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~i~~s~~~~~~~ 275 (373)
..+.++.... .++.+. .+...+..+..+..++....|+|.|.+......+|+|| |+.+|++..+..++.++
T Consensus 155 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~-k~ip~ai~~~~~~~~i~ 233 (426)
T PF13520_consen 155 PLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENKN-KTIPRAIIISIIIVAII 233 (426)
T ss_dssp HHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS-HHHHHHHHHHHHHHHHH
T ss_pred hhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccccc-hhheeecccchhHHHHH
Confidence 3222221111 111110 01122234445788999999999999999999999998 89999999999999999
Q ss_pred HHHHHHHHHHHhcCCchh---h------hhhcCCCchHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHc
Q 017309 276 YGGVAVMGFLMFGQGTLS---Q------ITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELL 336 (373)
Q Consensus 276 Y~~~g~~gy~~fg~~~~~---~------il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~ 336 (373)
|...........+++..+ + ...+...++....+..+...+..+.+....+....+.+..+-
T Consensus 234 y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a 303 (426)
T PF13520_consen 234 YILFSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMA 303 (426)
T ss_dssp HHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhhhhheeeecccchhhhcccccccccchhhccccccccccccccccccccccccchhhcchhhcccccc
Confidence 999988766665543221 1 111110011233334455556666666666665555555443
No 40
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.51 E-value=9.4e-12 Score=121.68 Aligned_cols=229 Identities=10% Similarity=0.056 Sum_probs=156.8
Q ss_pred CCCCCHHHHHHHHHHHHHhHhhhHHH-HHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCC-CCChHHHHHHhcCc
Q 017309 43 AHGCSFTQTIFNGINVMAGVGLLSTP-YTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEG-ITTYPDIGEAAFGK 119 (373)
Q Consensus 43 ~~~~s~~~~~~~l~~~~iG~Gil~lP-~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~-~~~y~~l~~~~~G~ 119 (373)
+|+.+.++..+..++.++|+|++..| .+.+++|.. .++.+++.+++.......+.|...+.|. ...|.+.+++.+||
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g~ 80 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVDP 80 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCc
Confidence 35789999999999999999999865 466777765 4666788888888899999999877884 45798999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhhHHHHHHHH
Q 017309 120 YGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVV 199 (373)
Q Consensus 120 ~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~ 199 (373)
..++++.+..++.......+.....+..+..+.+.. . ...+..+. .+++-+...++.+..++++.....
T Consensus 81 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-~~~~~~~~-~~~~~~in~~gv~~~~~~~~~~~~ 149 (478)
T TIGR00913 81 AFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTDKV---------N-PAVWIAIF-YVFIVIINLFGVKGYGEAEFWFSS 149 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC---------C-HHHHHHHH-HHHHHHHHHhcchHHHHHHHHHHH
Confidence 999999999888877777777777777776543211 1 11222221 222223344566776666654432
Q ss_pred HHHHHHHhh---h-eeccccC--cc------cCCCC-cc-----ccccchhhhhhhHhhhcccceehhhHhhhccCch-h
Q 017309 200 ATILIVLCV---L-FLGTIEG--IG------FHPTG-QV-----VKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-K 260 (373)
Q Consensus 200 ~~~~~~~~i---~-~~~~~~~--~~------~~~~~-~~-----~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~-~ 260 (373)
..+...+.+ . ....... .. +.++. .. ..+.++..++....|+|.|.+......+|+|||+ +
T Consensus 150 ~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~ 229 (478)
T TIGR00913 150 IKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEAANPRKS 229 (478)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhhcChhhH
Confidence 222211111 1 1110000 00 00000 00 0134567788889999999999999999999997 6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 017309 261 FTKALITCFALCVLIYGGVAVM 282 (373)
Q Consensus 261 ~~~~i~~s~~~~~~~Y~~~g~~ 282 (373)
.||++..+...+.++|+...+.
T Consensus 230 iPrai~~~~~~~~~~Y~l~~~~ 251 (478)
T TIGR00913 230 IPRAAKRTFWRILVFYILTLFL 251 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999997654
No 41
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.49 E-value=1.3e-11 Score=119.62 Aligned_cols=235 Identities=14% Similarity=0.091 Sum_probs=155.3
Q ss_pred cCCCCCCHHHHHHHHHHHHHhHhhhHHHHHH-HhhcHH--HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhc
Q 017309 41 PIAHGCSFTQTIFNGINVMAGVGLLSTPYTV-KEAGWA--SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAF 117 (373)
Q Consensus 41 ~~~~~~s~~~~~~~l~~~~iG~Gil~lP~~~-~~~G~~--g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~ 117 (373)
+.+|+.|.++.+...++.++|+|++..|... .+.|.. .++.+++.+++.......+.|.....|+........++.+
T Consensus 5 ~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG~y~y~~~~~ 84 (445)
T PRK11357 5 ELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADYVYLKNAG 84 (445)
T ss_pred cccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCceeeHHHhc
Confidence 3567899999999999999999999988764 456643 5566778888888888889998776777666666688999
Q ss_pred CcchhhHHHHHHH-HHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhhHHHHH
Q 017309 118 GKYGRLLISVLLY-TELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSAT 196 (373)
Q Consensus 118 G~~~~~~~~i~~~-~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~ 196 (373)
||..+++..+..+ .........+....++++....+. +. .......+..++.+-....++.+...+++.+
T Consensus 85 g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~--------~~-~~~~~~~~~~~~~~~~ln~~gv~~~~~v~~~ 155 (445)
T PRK11357 85 SRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTPI--------DP-LLGKFIAAGLIIAFMLLHLRSVEGGAAFQTL 155 (445)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------ch-HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 9998888887644 333344556666677776554321 00 0111122222222223344566666777666
Q ss_pred HHHHHHHHHHhhheec--cccCcccCCCCc-----cccccchhhhhhhHhhhcccceehhhHhhhccCch-hhHHHHHHH
Q 017309 197 GVVATILIVLCVLFLG--TIEGIGFHPTGQ-----VVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKALITC 268 (373)
Q Consensus 197 ~~~~~~~~~~~i~~~~--~~~~~~~~~~~~-----~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~-~~~~~i~~s 268 (373)
.....+...+.++..+ ...+.+++.+.+ ..++.++..++....|+|.|.+......+|+|||+ +.||++..+
T Consensus 156 ~~~~~~~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iP~Ai~~~ 235 (445)
T PRK11357 156 ITIAKIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGKTMPRALIGS 235 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccccchHHHHHH
Confidence 6554443322221111 111111111111 11234566788889999999999999999999997 689999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 017309 269 FALCVLIYGGVAVMGF 284 (373)
Q Consensus 269 ~~~~~~~Y~~~g~~gy 284 (373)
+.++.++|+.......
T Consensus 236 ~~i~~~~Y~l~~~~~~ 251 (445)
T PRK11357 236 CLLVLVLYTLLALVIS 251 (445)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998776543
No 42
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.48 E-value=1.6e-11 Score=118.73 Aligned_cols=270 Identities=14% Similarity=0.143 Sum_probs=171.3
Q ss_pred HHHHHHhHhhhHHHH-HHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcCcchhhHHHHHHHHHH
Q 017309 55 GINVMAGVGLLSTPY-TVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLLISVLLYTEL 133 (373)
Q Consensus 55 l~~~~iG~Gil~lP~-~~~~~G~~g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~i~~~~~~ 133 (373)
.++.+||+|++..|. +.+++|...++.+++.+++....+..+.|...+.|......+.+++.+||+.++++.+..++..
T Consensus 3 ~ig~~IGsGif~~~g~~~~~aG~~~ll~~~i~gi~~~~~al~~aEL~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~~~~ 82 (446)
T PRK10197 3 SIAGVIGASLFVGSSVAIAEAGPAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWWFW 82 (446)
T ss_pred eecchhHhHHHHHhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHcChHHHHHHHHHHHHHH
Confidence 357899999998877 6678886688888999999999999999998888988899999999999999999999888776
Q ss_pred HHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhhHHHHHHHHHHHHHHHhhheecc
Q 017309 134 YSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVLCVLFLGT 213 (373)
Q Consensus 134 ~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~i~~~~~ 213 (373)
...........+..++.+.+. . ....+ .+...+.+-+...++.+..+.++.......+...+.++....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~---------~-~~~~~-~~~~l~~~~~lN~~gv~~~~~i~~~~~~~ki~~li~~ii~~~ 151 (446)
T PRK10197 83 VLVIPLEANIAAMILHSWVPG---------I-PIWLF-SLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILAFIFLGA 151 (446)
T ss_pred HHHHHHHHHHHHHHHHhcccc---------C-cHHHH-HHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 666655555555555444321 1 11222 222222222333446666666665554433332222211110
Q ss_pred --ccC----c---c----cCCC-CccccccchhhhhhhHhhhcccceehhhHhhhccCch-hhHHHHHHHHHHHHHHHHH
Q 017309 214 --IEG----I---G----FHPT-GQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKALITCFALCVLIYGG 278 (373)
Q Consensus 214 --~~~----~---~----~~~~-~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~-~~~~~i~~s~~~~~~~Y~~ 278 (373)
..+ . + ++.. ..+..+.++..++....|+|.|.+.+....+|+|||+ +.+|++..+...+.++|+.
T Consensus 152 ~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~~~i~i~Yil 231 (446)
T PRK10197 152 VAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIWRISIFYLC 231 (446)
T ss_pred HHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHH
Confidence 000 0 0 0000 0122345788899999999999999999999999998 5999999999999999998
Q ss_pred HHHHHHHHhcCCchh--------hhhhcCCCchHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHc
Q 017309 279 VAVMGFLMFGQGTLS--------QITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELL 336 (373)
Q Consensus 279 ~g~~gy~~fg~~~~~--------~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~ 336 (373)
..+........+..+ ....+... +....+..+..+++.+.+..-.++...+.+..+-
T Consensus 232 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~-~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~a 296 (446)
T PRK10197 232 SIFVVVALIPWNMPGLKAVGSYRSVLELLNI-PHAKLIMDCVILLSVTSCLNSALYTASRMLYSLS 296 (446)
T ss_pred HHHHHheecCcCcccccccCcHHHHHHHcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766643333222111 12222221 2233344454555666666555565555555443
No 43
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.48 E-value=5.8e-12 Score=123.74 Aligned_cols=243 Identities=12% Similarity=0.138 Sum_probs=157.5
Q ss_pred cccCCCCCCHHHHHHHHHHHHHhHhhhHHHHHH-HhhcHHHH--HHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHH
Q 017309 39 ELPIAHGCSFTQTIFNGINVMAGVGLLSTPYTV-KEAGWASL--VVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEA 115 (373)
Q Consensus 39 ~~~~~~~~s~~~~~~~l~~~~iG~Gil~lP~~~-~~~G~~g~--i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~ 115 (373)
+.+.+|+.+.++.+...++.++|+|++..|... +++|..|. +.+++.++........+.|.....|+........++
T Consensus 37 ~~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sGG~y~~~~~ 116 (501)
T TIGR00911 37 AVALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSGGEYNYILE 116 (501)
T ss_pred ccccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhHHh
Confidence 345677899999999999999999999988754 55675443 556777788888888999998778887788888999
Q ss_pred hcCcchhhHHHHHHHH-HHHHHHHHHHHHhhhhhhh-hcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhhHH
Q 017309 116 AFGKYGRLLISVLLYT-ELYSYCVEFIILEGDNLTS-LFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYL 193 (373)
Q Consensus 116 ~~G~~~~~~~~i~~~~-~~~g~~~~y~i~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~ 193 (373)
.+||+.+++..+..+. ...+.+..+....++++.+ +.+....+ .+ ......+..++++-....++.+...++
T Consensus 117 ~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~----~~--~~~~i~~~~i~~~~~ln~~Gvk~~~~~ 190 (501)
T TIGR00911 117 VFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEVP----EW--AIRLVAVLCVLLLTLVNCLSVKWATRV 190 (501)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc----hH--HHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 9999988887765443 2223444555556666432 33321100 00 011111222222223344567777777
Q ss_pred HHHHHHHHHHHHHhhheec---ccc-Cc-ccCCCC--c--cccccchhhhhhhHhhhcccceehhhHhhhccCch-hhHH
Q 017309 194 SATGVVATILIVLCVLFLG---TIE-GI-GFHPTG--Q--VVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTK 263 (373)
Q Consensus 194 s~~~~~~~~~~~~~i~~~~---~~~-~~-~~~~~~--~--~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~-~~~~ 263 (373)
+.+.....+..++.++... ... +. +.+... . ..+..++..++....|+|.|.+.+....+|+|||+ +.||
T Consensus 191 ~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~r~iPr 270 (501)
T TIGR00911 191 QDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYRTLPI 270 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCchhhhHH
Confidence 7766555443332222111 111 11 011000 0 11234577788999999999999999999999996 6999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 017309 264 ALITCFALCVLIYGGVAVMGFLMF 287 (373)
Q Consensus 264 ~i~~s~~~~~~~Y~~~g~~gy~~f 287 (373)
++..+..++.++|++..+......
T Consensus 271 Ai~~s~~~v~~~Y~l~~~a~~~~~ 294 (501)
T TIGR00911 271 AIIISMPIVTFIYVLTNIAYFTVL 294 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999876554443
No 44
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.40 E-value=1.1e-10 Score=113.92 Aligned_cols=246 Identities=15% Similarity=0.210 Sum_probs=170.6
Q ss_pred ccCCCCCCHHH-HHHHHHHHHHhHhhhHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcC
Q 017309 40 LPIAHGCSFTQ-TIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFG 118 (373)
Q Consensus 40 ~~~~~~~s~~~-~~~~l~~~~iG~Gil~lP~~~~~~G~~g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G 118 (373)
.+.+++.+.++ ......+.++|.|++.+|......+....+.+++.++........+.|.+.+.|+...+.+.+++.+|
T Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g 87 (466)
T COG0531 8 SELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLAPAAILAWLIAGIIILFLALSYAELSSAIPSAGGAYAYAKRALG 87 (466)
T ss_pred hhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeehhhhcC
Confidence 34456778888 88889999999999999888877662233335666666666678888887777877888888999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCc-hhHHHHHHHHHHHhhhcccCCchhhHHHHHH
Q 017309 119 KYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDS-THLFGILTALIVLPTIWLRDLRVISYLSATG 197 (373)
Q Consensus 119 ~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~ 197 (373)
|+.+++..+..++.......+.....++.+..+.+.... ..... ......+.....+-+.-.++.+..++++.+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ln~~G~~~~~~~~~~~ 163 (466)
T COG0531 88 PRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGL----LSIGPLLIILIALALIALLTLLNLRGIKASAKINSII 163 (466)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchh----hcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 998999999999988888888888888887777764210 00000 1122222223333334445677777777666
Q ss_pred HHHHHHHHHhhheecccc-Ccc-cCCCC----ccccccchhhhhhhHhhhcccceehhhHhhhccCch-hhHHHHHHHHH
Q 017309 198 VVATILIVLCVLFLGTIE-GIG-FHPTG----QVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKALITCFA 270 (373)
Q Consensus 198 ~~~~~~~~~~i~~~~~~~-~~~-~~~~~----~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~-~~~~~i~~s~~ 270 (373)
.+..+...+.+....... +.. .+... .......+..++....++|.|.+...+..+|+|||+ +.+|++..++.
T Consensus 164 ~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~ip~aii~~~~ 243 (466)
T COG0531 164 TILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPRAIILSLL 243 (466)
T ss_pred HHHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccccccHHHHHHHH
Confidence 555554444333222111 110 11111 112223577888899999999999999999999996 68999999999
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 017309 271 LCVLIYGGVAVMGFLMFGQ 289 (373)
Q Consensus 271 ~~~~~Y~~~g~~gy~~fg~ 289 (373)
.+.++|+..........++
T Consensus 244 ~~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 244 IVLILYILGALVIVGVLPA 262 (466)
T ss_pred HHHHHHHHHHHHHHhCccH
Confidence 9999999999887777664
No 45
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.37 E-value=2.1e-11 Score=118.80 Aligned_cols=297 Identities=9% Similarity=0.022 Sum_probs=200.3
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhHhhhH-HHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCC-CChHHHHHHh
Q 017309 40 LPIAHGCSFTQTIFNGINVMAGVGLLS-TPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGI-TTYPDIGEAA 116 (373)
Q Consensus 40 ~~~~~~~s~~~~~~~l~~~~iG~Gil~-lP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~-~~y~~l~~~~ 116 (373)
.+.+|+.+.++..+.-++.++|+|++- ...+.++.|.. -++..++.+...+.++..+.|...+.|.. .++...++..
T Consensus 26 ~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aGs~~~ya~~~ 105 (554)
T KOG1286|consen 26 TELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAGSFYTYAYRF 105 (554)
T ss_pred chhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccccceeeeeee
Confidence 466778999999999999999999865 68888899988 66667888899999999999998878885 6777779999
Q ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCc--ccC-chhHHHHHHHHHHHhhhccc---CCchh
Q 017309 117 FGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGF--QLD-STHLFGILTALIVLPTIWLR---DLRVI 190 (373)
Q Consensus 117 ~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~--~~~-~~~~~~~i~~~i~~pl~~~~---~l~~l 190 (373)
.|+-+++.+.+..++..+..+.+-....+.+++.+.. ....... ..+ .-+....+..++++-+...| +.+..
T Consensus 106 i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~--~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~ef~ 183 (554)
T KOG1286|consen 106 VGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTG--ASLIGILVDTVNPGGWIPDFLAFILIINLFGVLAYGEVEFS 183 (554)
T ss_pred eCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--cccccccccCCCCCccHHHHHHHHHHHHHHHHhhccceeeh
Confidence 9999999999999999999999999999999999860 0000000 000 01111222223333333333 34444
Q ss_pred hHHHHHHHHHHHHHHHhhheeccccCc--ccC------CC--CccccccchhhhhhhHhhhcccceehhhHhhhccCch-
Q 017309 191 SYLSATGVVATILIVLCVLFLGTIEGI--GFH------PT--GQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT- 259 (373)
Q Consensus 191 ~~~s~~~~~~~~~~~~~i~~~~~~~~~--~~~------~~--~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~- 259 (373)
..++.+-....+++...++..+..... ++. ++ -.++.++++..++....|+|.|.+.+-...+|-|||+
T Consensus 184 ~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~k 263 (554)
T KOG1286|consen 184 LAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAKNPRK 263 (554)
T ss_pred HHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhccCCcc
Confidence 444443333333333233333322111 221 11 1134478899999999999999999999999999997
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC--chhhh--------hhcCCCchHHHHHHHHHHHHHHHHhhhhhhchh
Q 017309 260 KFTKALITCFALCVLIYGGVAVMGFLMFG-QG--TLSQI--------TLNMPPHAFASKVAVWTTVINPFTKYALLMNPL 328 (373)
Q Consensus 260 ~~~~~i~~s~~~~~~~Y~~~g~~gy~~fg-~~--~~~~i--------l~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~~~ 328 (373)
..|+++..++..+.++|+...+.--+.-. ++ ..++. -.+...-.....+.++...+.++.+---.+++.
T Consensus 264 ~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~y~~ 343 (554)
T KOG1286|consen 264 AIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGLLSSLNSSLYAG 343 (554)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHHHHHHHHHhHHh
Confidence 69999999999999999998875433221 11 11111 112222222223667777778887777788888
Q ss_pred HHHHHHHcCC
Q 017309 329 ARSIEELLPA 338 (373)
Q Consensus 329 ~~~~~~~~~~ 338 (373)
-+.+..+-.+
T Consensus 344 sR~l~amA~~ 353 (554)
T KOG1286|consen 344 SRVLYALAKD 353 (554)
T ss_pred HHHHHHHHhc
Confidence 8887776433
No 46
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=99.35 E-value=6.4e-10 Score=105.38 Aligned_cols=289 Identities=12% Similarity=0.104 Sum_probs=202.4
Q ss_pred cCCCCCCHHHHHHHHHHHHHhHhhh-HHHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcC
Q 017309 41 PIAHGCSFTQTIFNGINVMAGVGLL-STPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFG 118 (373)
Q Consensus 41 ~~~~~~s~~~~~~~l~~~~iG~Gil-~lP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G 118 (373)
+.+|+...+...+.-++..||+|.+ +.-.+.+++|.. -++..++.+...+..+..+.|++...|...+|...+.+..+
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~sGsF~~ya~rfvd 120 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVSGSFSTYATRFVD 120 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhcC
Confidence 5778899999999999999999975 699999999999 66668999999999999999998878877789999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhh--hcccCCchhh-HHHH
Q 017309 119 KYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPT--IWLRDLRVIS-YLSA 195 (373)
Q Consensus 119 ~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl--~~~~~l~~l~-~~s~ 195 (373)
+-.++.+.+..++.....+..-++..+..++.+.+.. . +...|..+..++++.+ .-.|...+.- |+|.
T Consensus 121 pa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~~-v--------~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~ 191 (541)
T COG0833 121 PAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPDT-V--------PPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSS 191 (541)
T ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCCC-C--------ChHHHHHHHHHHHHHHHHhcccccceehHHHHH
Confidence 9999999999999999999999999999988887543 1 1344555544444443 3334444433 3444
Q ss_pred HHHHHHHHHHHh--hheeccccCc------ccCC-CCccccccchhhhhhhHhhhcccceehhhHhhhccCch-hhHHHH
Q 017309 196 TGVVATILIVLC--VLFLGTIEGI------GFHP-TGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKAL 265 (373)
Q Consensus 196 ~~~~~~~~~~~~--i~~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~-~~~~~i 265 (373)
+=++.++.+++. ++..+...+. -+++ .....++.++...+-+..|+|.|.+.+--...|-+||+ .+||++
T Consensus 192 iKV~~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K~iPkAi 271 (541)
T COG0833 192 IKVLTIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRKSIPKAI 271 (541)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCchhhhHHHH
Confidence 443333322221 1122222211 1111 12244567788888999999999999999999999998 589999
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHhcCCc-----------hhh---hhhcCCCchHHHHHHHHHHHHHHHHhhhhhhchhHH
Q 017309 266 ITCFALCVLIYGGVAVM-GFLMFGQGT-----------LSQ---ITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLAR 330 (373)
Q Consensus 266 ~~s~~~~~~~Y~~~g~~-gy~~fg~~~-----------~~~---il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~ 330 (373)
.-.+--+.++|+..-++ |.+.=.+|. .++ ..+|.. -.....+.++.+.++++.+--=.++..-+
T Consensus 272 k~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~G-i~~~~~imNaVIL~svlSa~NS~lYasSR 350 (541)
T COG0833 272 KQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAG-IPVAASIMNAVILTSVLSAANSGLYASSR 350 (541)
T ss_pred HHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcC-CccchHHHHHHHHHHHHHHhhccchHHHH
Confidence 98888888888875443 222222221 011 111211 23455667777777777777777788888
Q ss_pred HHHHHcCCC
Q 017309 331 SIEELLPAG 339 (373)
Q Consensus 331 ~~~~~~~~~ 339 (373)
.+..+-.++
T Consensus 351 ~L~sLA~~g 359 (541)
T COG0833 351 MLYSLAKQG 359 (541)
T ss_pred HHHHHHhcC
Confidence 887765443
No 47
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=99.30 E-value=4.8e-09 Score=102.46 Aligned_cols=248 Identities=11% Similarity=0.025 Sum_probs=150.8
Q ss_pred cCCCCCCHHHHHHHHHHHH-HhHhhhHHHH-HHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcC
Q 017309 41 PIAHGCSFTQTIFNGINVM-AGVGLLSTPY-TVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFG 118 (373)
Q Consensus 41 ~~~~~~s~~~~~~~l~~~~-iG~Gil~lP~-~~~~~G~~g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G 118 (373)
+.+|+.|.++.+..-++.+ +|.|+.+.+. +..++|...+..+++.++........+.|...+.|........+++.+|
T Consensus 10 ~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp~~~~~~li~~i~~l~~als~aEL~s~~P~aGG~Y~~~~~~~g 89 (475)
T TIGR03428 10 QLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGPAFFWTWPVVFVGQLLVALNFAELAARYPISGAIYQWSRRMGG 89 (475)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHcC
Confidence 3566899999999888875 8999998665 4556665455567778888888888999998888888888889999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCC--CCCCCcc-cCc--hhHHHHHHHHHHHhhhcccCCchhhHH
Q 017309 119 KYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGAS--LDWPGFQ-LDS--THLFGILTALIVLPTIWLRDLRVISYL 193 (373)
Q Consensus 119 ~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~--~~~~~~~-~~~--~~~~~~i~~~i~~pl~~~~~l~~l~~~ 193 (373)
|+.++++.+..++................+..+.+... ....... ... ......+..+++.-+...+..+..+++
T Consensus 90 ~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~k~~~~i 169 (475)
T TIGR03428 90 EVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVINCIGVEWMSRV 169 (475)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 99999998888776654444444444444433321110 0000000 000 111112222222223344466667777
Q ss_pred HHHHHHHHHHHHHhhheeccc--c-Ccc--cCCC--Ccccc-ccchhhhhhhHhhhcccceehhhHhhhccCch-hhHHH
Q 017309 194 SATGVVATILIVLCVLFLGTI--E-GIG--FHPT--GQVVK-WSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKA 264 (373)
Q Consensus 194 s~~~~~~~~~~~~~i~~~~~~--~-~~~--~~~~--~~~~~-~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~-~~~~~ 264 (373)
+.+.....+...+.++..... + +.. ++.. ....+ ...+..+.....|+|.|.+....+.+|+|||+ +.||+
T Consensus 170 ~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~knP~r~iPra 249 (475)
T TIGR03428 170 NTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEETKNPRRVAPRT 249 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhcCcchhhhHH
Confidence 666554433322222211111 1 000 1111 00011 11244455667899999999999999999997 68999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 017309 265 LITCFALCVLIYGGVAVMGFLMFG 288 (373)
Q Consensus 265 i~~s~~~~~~~Y~~~g~~gy~~fg 288 (373)
+..++.++.++|..+-+......+
T Consensus 250 i~~s~~i~~~~~~~~~~~~~~~~~ 273 (475)
T TIGR03428 250 ILTALSVSALGGGLMILGALMAAP 273 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCC
Confidence 999999888777666555444444
No 48
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=99.20 E-value=3.7e-08 Score=96.77 Aligned_cols=240 Identities=14% Similarity=0.143 Sum_probs=139.5
Q ss_pred CCCCCHHHHHHHHHHHHHhHhhhHHHHHHHhhcHHHHHHHHHHHHHHH-HHHHHHHHhhhhCCC-CCChHHHHHHhcCcc
Q 017309 43 AHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVCC-YTASLMRYCFESKEG-ITTYPDIGEAAFGKY 120 (373)
Q Consensus 43 ~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~g~i~~~~~~~~~~-~~~~~l~~~~~~~~~-~~~y~~l~~~~~G~~ 120 (373)
++|.|+++.....+++++|.+ .+|.++++.|..+++..++.+++.. -....+.|.....|+ +..-....++.+||+
T Consensus 6 ~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~~G~~ 83 (496)
T PRK15238 6 KKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYSAIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKSVGPK 83 (496)
T ss_pred cCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHcCch
Confidence 567999999999999999976 5798888888776666666665544 356678888776776 578888899999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH-hhhhhhhhcCCCCCC-CCCcccCchhHHHHHH--HHHHHhhhcccCCchhhHHHHH
Q 017309 121 GRLLISVLLYTELYSYCVEFIIL-EGDNLTSLFPGASLD-WPGFQLDSTHLFGILT--ALIVLPTIWLRDLRVISYLSAT 196 (373)
Q Consensus 121 ~~~~~~i~~~~~~~g~~~~y~i~-~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~i~--~~i~~pl~~~~~l~~l~~~s~~ 196 (373)
.+++..+..+............. ........+.....+ +............++. .+..+-....|..+..++++.+
T Consensus 84 ~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~t~vn~~g~~~~~~i~~~ 163 (496)
T PRK15238 84 FAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGKDTTQTWHFLGLNSTQVVGILAVIWMILVTFVASKGINKIAKVTSI 163 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 88876654433322211111100 000000111111000 0000011111121222 2223334455677777777765
Q ss_pred HHHHHHHH----H-HhhheeccccCc---ccC-----C-CCcccc-ccchhhhhhhHhhhcccceehhhHhhhccCch-h
Q 017309 197 GVVATILI----V-LCVLFLGTIEGI---GFH-----P-TGQVVK-WSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-K 260 (373)
Q Consensus 197 ~~~~~~~~----~-~~i~~~~~~~~~---~~~-----~-~~~~~~-~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~-~ 260 (373)
+....+.. + +..+......+. +.. + ..+.++ ..++..++....|+|.|.+......+|+|||+ +
T Consensus 164 ~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~~~p~~~ 243 (496)
T PRK15238 164 GGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGGLVDKTENPEKN 243 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHHHHHhccCCCcc
Confidence 44332211 1 111111111100 000 0 011111 12356677788999999999999999999997 6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 017309 261 FTKALITCFALCVLIYGGVAVMGF 284 (373)
Q Consensus 261 ~~~~i~~s~~~~~~~Y~~~g~~gy 284 (373)
.||++..+...+.++|.+..+...
T Consensus 244 ~p~ai~~~~~~~~~~y~l~~~~~~ 267 (496)
T PRK15238 244 FPKGIIIAAIVISIGYSLAIFLWG 267 (496)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998755443
No 49
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=99.18 E-value=2.3e-08 Score=97.98 Aligned_cols=238 Identities=6% Similarity=0.003 Sum_probs=140.4
Q ss_pred CCCCCCHHHHHHHHHHHHHh--HhhhH-HHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhc
Q 017309 42 IAHGCSFTQTIFNGINVMAG--VGLLS-TPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAF 117 (373)
Q Consensus 42 ~~~~~s~~~~~~~l~~~~iG--~Gil~-lP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~ 117 (373)
.+|+.+.++.+...++. +| .|+.. .+.+.++.|.. -++.+++.+++....+..+.|...+.|........+++.+
T Consensus 10 l~r~l~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~Gg~y~~~~~~~ 88 (482)
T TIGR00907 10 LKREFSLWSIFGFAFSI-SNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSGGQYFWSAKLA 88 (482)
T ss_pred eecccchhHHHHHHHHH-HHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHhc
Confidence 45678889988887774 44 67654 56677788876 5667888889999999999999888888888888899988
Q ss_pred Cc----chhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHH--HHHHHhhhcccCCchhh
Q 017309 118 GK----YGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILT--ALIVLPTIWLRDLRVIS 191 (373)
Q Consensus 118 G~----~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~--~~i~~pl~~~~~l~~l~ 191 (373)
|+ ...+++.+..++.....+.+.....++++.......... .......+...++. ....+-+...+..+...
T Consensus 89 g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~in~~g~k~~~ 166 (482)
T TIGR00907 89 PPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPG--REYIPTRWHIFGIMIGIHLIHALINSLPTKWLP 166 (482)
T ss_pred ccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCccccCchhhhhHHHHHHHHHHHHHhhHhHHH
Confidence 74 456777666666666666656666666665443211100 00001111111111 12222223333455555
Q ss_pred HHHHHHHHHHHHHHHhhh--eecccc-Ccc-----cCCCCccc-cc--c--chhhhhhhHhhhcccceehhhHhhhccCc
Q 017309 192 YLSATGVVATILIVLCVL--FLGTIE-GIG-----FHPTGQVV-KW--S--GMPFAIGIYGFCYSGHSVFPNIYQSMADK 258 (373)
Q Consensus 192 ~~s~~~~~~~~~~~~~i~--~~~~~~-~~~-----~~~~~~~~-~~--~--~~~~~~~~~~faf~~~~~~~~i~~~m~~p 258 (373)
+++.+.....++..+.++ ...... +.+ .++..+.. ++ . .+..++....|+|.|.+......+|+|||
T Consensus 167 ~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~~~~a~E~knP 246 (482)
T TIGR00907 167 RITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGFAFLLGLLNPAWSMTGYDGTAHMAEEIENP 246 (482)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCchhhhhhhhhhHHHhcCcchhhHHHHhcCCh
Confidence 555544333322222111 111111 000 00000000 11 1 23445556779999999999999999999
Q ss_pred h-hhHHHHHHHHHHHHHHHHHHHHH
Q 017309 259 T-KFTKALITCFALCVLIYGGVAVM 282 (373)
Q Consensus 259 ~-~~~~~i~~s~~~~~~~Y~~~g~~ 282 (373)
+ ++||++..+..++.++|.+..+.
T Consensus 247 ~r~iP~Ai~~s~~i~~~~~~~~~l~ 271 (482)
T TIGR00907 247 EVVGPRAIIGAVAIGIVTGFCFNIV 271 (482)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 7 68999999988777655544443
No 50
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=99.14 E-value=8e-10 Score=91.03 Aligned_cols=213 Identities=16% Similarity=0.211 Sum_probs=147.1
Q ss_pred CCHHHHHHHHHHHHHhHhhhHHHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhh------------h----C-----
Q 017309 46 CSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFE------------S----K----- 103 (373)
Q Consensus 46 ~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~------------~----~----- 103 (373)
.|-.-....++|-++|+|-|++|.+|+.+||+ ++.++.+.++.++.+....++... + +
T Consensus 12 ysq~vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~s 91 (319)
T KOG3832|consen 12 YSQTVGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDES 91 (319)
T ss_pred hhhhhhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhcccccc
Confidence 33455567888999999999999999999999 999999999999999988887641 0 0
Q ss_pred -------------------C----------------CCCChHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 017309 104 -------------------E----------------GITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNL 148 (373)
Q Consensus 104 -------------------~----------------~~~~y~~l~~~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l 148 (373)
| ++...++++...|.|.+-.+..++++++.+|....|...+-...
T Consensus 92 tasd~dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnkvgln~fyf~iiiylfgdlaiyaaavpfs~ 171 (319)
T KOG3832|consen 92 TASDDDVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNKVGLNFFYFAIIIYLFGDLAIYAAAVPFSA 171 (319)
T ss_pred ccCCCcEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhcCchHh
Confidence 0 01356688889999999999999999999999999998877776
Q ss_pred hhhcCCCCCC------------CCC--c-----ccCchhH-HHHHHHHHHHhhhcccCCchhhHHHHHHHHHHHHHHHhh
Q 017309 149 TSLFPGASLD------------WPG--F-----QLDSTHL-FGILTALIVLPTIWLRDLRVISYLSATGVVATILIVLCV 208 (373)
Q Consensus 149 ~~~~~~~~~~------------~~~--~-----~~~~~~~-~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~i 208 (373)
.++....... ... | ..+..++ .++...++.+|+.+. +++.-++++.+..+.-..-...-
T Consensus 172 m~itcaa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf~-diqktk~iqiltslmrw~~~~~g 250 (319)
T KOG3832|consen 172 MNITCAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTFA-DIQKTKHIQILTSLMRWAAFILG 250 (319)
T ss_pred hhhhhhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeEe-ccccchhHHHHHHHHHHHhccch
Confidence 6654332211 000 0 0111233 344455566688877 78888888876554433222211
Q ss_pred heecc-c-cCcccCCCCccccccchhhhhhhHhhhcccceehhhHhhhccCch
Q 017309 209 LFLGT-I-EGIGFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT 259 (373)
Q Consensus 209 ~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~ 259 (373)
+..+. . ........++..++-++-+.++...|+|.+|.+.|.....++.+.
T Consensus 251 ~~l~tmqaeedaa~a~p~arc~cgfgkl~~~aly~~~a~cmapda~gagq~k~ 303 (319)
T KOG3832|consen 251 ISLATMQAEEDAAAAHPPARCFCGFGKLFGCALYAFMAHCMAPDAIGAGQTKD 303 (319)
T ss_pred hhhhhhhhcccccccCCccccccccccccchhhHHHHhhccCCCCCCCCeecc
Confidence 11111 1 111122234456667888999999999999999999988887654
No 51
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=99.12 E-value=5e-10 Score=109.54 Aligned_cols=232 Identities=13% Similarity=0.130 Sum_probs=155.4
Q ss_pred HHHHHHHhHhhhH-HHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcCcchhhHHHHHHHH
Q 017309 54 NGINVMAGVGLLS-TPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLLISVLLYT 131 (373)
Q Consensus 54 ~l~~~~iG~Gil~-lP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~i~~~~ 131 (373)
..+..++|+|++. .+.+..+.|.. ..+..++.+++.......+.|..++.+...++.+.+++.+||..+....+..++
T Consensus 5 ~~ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~Gg~y~y~~~~lg~~~Gf~~gw~y~~ 84 (478)
T PF00324_consen 5 ISIGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSAGGFYAYASRGLGPALGFAAGWAYWL 84 (478)
T ss_pred eeHHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhccccchhhhhhhccCCcCCceeeHHHHH
Confidence 3467889999865 78899999997 777788999999999999999988888888999999999999999999988877
Q ss_pred HHHHHHHHHHHHhhhhhhhh--cCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhhHHHHHHHHHHHHHHHhhh
Q 017309 132 ELYSYCVEFIILEGDNLTSL--FPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVLCVL 209 (373)
Q Consensus 132 ~~~g~~~~y~i~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~i~ 209 (373)
.............+..++.+ .++... .+.+.. .+..+..+++. .....+.+..+++........+...+..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~i~~~~~~-~l~~~gv~~~~~~~~~~~~i~~~~li~~i 158 (478)
T PF00324_consen 85 SYIAAIAAEATAAGSFLQFWGYFPGLPS---TWVWGI--LIAIIFILLIT-LLNLFGVRVSGKIEFILTIIKLIALIAFI 158 (478)
T ss_pred HHHHHHHhhhhhhhhhhccccccccccc---cccccc--hhhhhhhhhhh-hhhhhhhhccchHHHHHHHHhhhHhhhhh
Confidence 77777777777666666555 222210 010100 11222222222 22223444444433332222222222111
Q ss_pred eec----cccCcccCC-----C-------------CccccccchhhhhhhHhhhcccceehhhHhhhccCch-hhHHHHH
Q 017309 210 FLG----TIEGIGFHP-----T-------------GQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKALI 266 (373)
Q Consensus 210 ~~~----~~~~~~~~~-----~-------------~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~-~~~~~i~ 266 (373)
... ..++.+.+. + +...++.++..++....++|.|.+......+|.|||+ ++||++.
T Consensus 159 i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k~IPra~~ 238 (478)
T PF00324_consen 159 IVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPRKTIPRATL 238 (478)
T ss_pred hhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCchhhhhhHhh
Confidence 111 111110000 0 1123467789999999999999999999999999998 6999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCc
Q 017309 267 TCFALCVLIYGGVAVMGFLMFGQGT 291 (373)
Q Consensus 267 ~s~~~~~~~Y~~~g~~gy~~fg~~~ 291 (373)
.++..+.++|+......-...+.+.
T Consensus 239 ~~~~~~~v~y~~~~~~~~~~~~~~~ 263 (478)
T PF00324_consen 239 LSVLRIGVFYVLTSYALTLAVPYDN 263 (478)
T ss_pred hhhhhhhhhhhhhhhhcccccCccc
Confidence 9999999999998887666666444
No 52
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=99.09 E-value=2.4e-07 Score=90.61 Aligned_cols=238 Identities=12% Similarity=0.104 Sum_probs=132.2
Q ss_pred CCCHHHHHHHHHHHHHhHhhhHHHHHHHhhcHHHHHHHHHHHHHHH-HHHHHHHHhhhhCCCCCChHHHHHHhcCcchhh
Q 017309 45 GCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVCC-YTASLMRYCFESKEGITTYPDIGEAAFGKYGRL 123 (373)
Q Consensus 45 ~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~g~i~~~~~~~~~~-~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~ 123 (373)
|.+.+..++..+.++++.. .+|.+ ++.|...++.+++.+++.. -......|.....|+.....+.+++.+|+++++
T Consensus 2 ~~~~~~l~~~~~~~v~~~~--~~~~~-a~~G~~~~~~~~i~~~~~~ip~al~~aEL~~~~P~~GG~y~~~~~a~G~~~gf 78 (474)
T TIGR03813 2 KLTVVTLAIMNITAVVSLR--GLPAE-AEYGLSAAFYYLFAAIFFLVPVSLVAAELATAWPEKGGVFRWVGEAFGARWGF 78 (474)
T ss_pred cccHHHHHHHHHHHHHHhh--cchHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCceeeHhhhcChhHHH
Confidence 5677777777766666654 45755 6788766666666666554 367777888777787778888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHH--HHhhhcccCCchhhHHHHHHHH-H
Q 017309 124 LISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALI--VLPTIWLRDLRVISYLSATGVV-A 200 (373)
Q Consensus 124 ~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i--~~pl~~~~~l~~l~~~s~~~~~-~ 200 (373)
+..+..++........-....+..+....+..... ... ....+....+..++ .+-+...++.+..++++..... .
T Consensus 79 ~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~l~~~~~~~~in~~gv~~~~~i~~~~~~~~ 156 (474)
T TIGR03813 79 LAIFMLWAQVTIWFPTVLTFGAVSLAFIGPEATVD-ESL-AGNKLYVLVSVLFVYWLATFIALRGVAAFTKVAKWGGIVG 156 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccC-ccc-ccccHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 98887776653222211111122211111110000 000 01112111112221 2223445566666666554321 1
Q ss_pred HHHHHHhhh---eec-cccC-ccc----CCCCcc-ccccchhhhhhhHhhhcccceehhhHhhhccCch-hhHHHHHHHH
Q 017309 201 TILIVLCVL---FLG-TIEG-IGF----HPTGQV-VKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKALITCF 269 (373)
Q Consensus 201 ~~~~~~~i~---~~~-~~~~-~~~----~~~~~~-~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~-~~~~~i~~s~ 269 (373)
.++..+.++ +.. ..++ ... ++..+. .++..+..+ ..++++|.|.+......+|+|||+ +.+|++..+.
T Consensus 157 ~ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~af~G~e~~~~~a~E~knP~r~iPrAi~~~~ 235 (474)
T TIGR03813 157 TIIPAAILVILGISYLLTGGESQIPLRWDDAFPDFTNFDNVVLA-ASIFLFYAGMEMNAVHVKDVDNPDKNYPIAILIAA 235 (474)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCCHHHhCCCccccccHHHH-HHHHHHHhchhHhHHHHHhccCcccchhHHHHHHH
Confidence 111111111 111 1111 101 110111 122333333 346789999999999999999997 6999999999
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 017309 270 ALCVLIYGGVAVMGFLMFG 288 (373)
Q Consensus 270 ~~~~~~Y~~~g~~gy~~fg 288 (373)
..+.++|+...+......+
T Consensus 236 ~~~~~~y~l~~~~~~~~~~ 254 (474)
T TIGR03813 236 LGTVLIFVLGTLAIAFIIP 254 (474)
T ss_pred HHHHHHHHHHHHHHHhccC
Confidence 9999999887765544444
No 53
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=99.06 E-value=1e-07 Score=93.61 Aligned_cols=231 Identities=12% Similarity=0.043 Sum_probs=126.3
Q ss_pred CCCCCHHHHHHHHHHHHHhHhhhHHHHHHHhhcHHHHHHHHHHHHH-HHHHHHHHHHhhhhCC-CCCChHHHHHHhcCcc
Q 017309 43 AHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVV-CCYTASLMRYCFESKE-GITTYPDIGEAAFGKY 120 (373)
Q Consensus 43 ~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~g~i~~~~~~~~-~~~~~~~l~~~~~~~~-~~~~y~~l~~~~~G~~ 120 (373)
++|.|.++.++..+.++.+ +..+| .+++.|+-.+..+++.+++ ..-.+....|.....+ +.......+++.+|++
T Consensus 3 ~~~l~~~~~~~~~~~~v~~--~~~~~-~~a~~G~~~i~~~i~~~l~~~lp~al~~AELas~~p~~~GG~y~wv~~a~G~~ 79 (507)
T TIGR00910 3 AKKLSLFGFFAITASMVLA--VYEYP-TFATSGFHLVFFLLLGGILWFIPVALCAAEMATVDGWEEGGIFAWVSNTLGER 79 (507)
T ss_pred CcEeeHHHHHHHHHHHHHH--HHhhH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeeeehhhccCcc
Confidence 4568889888888887764 46788 5778885444444444443 2336677788765444 5566667799999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHH-HHHHHHHHHhhhcccCCchhhHHHHHHHH
Q 017309 121 GRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLF-GILTALIVLPTIWLRDLRVISYLSATGVV 199 (373)
Q Consensus 121 ~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~i~~~i~~pl~~~~~l~~l~~~s~~~~~ 199 (373)
++++..+..++................+....... ....+....+ ..+.....+.+...+..+..++++.++.+
T Consensus 80 ~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~~~-----~~~~~~~~~~i~~l~i~~~~t~~n~~G~k~~~~i~~i~~~ 154 (507)
T TIGR00910 80 FGFAAIFFGWFQIAIGFIPMIYFILGALSYILKFP-----ALNEDPIIKFIAALIIFWALAFSQFGGTKRTAKIAKAGFF 154 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-----hhccCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 99887766666554322222111111112111110 0001111111 11122222333344566666666655433
Q ss_pred HHHHH-HHhhh---eeccccCccc----CCC--CccccccchhhhhhhHhhhcccceehhhHhhhccCch-hhHHHHHHH
Q 017309 200 ATILI-VLCVL---FLGTIEGIGF----HPT--GQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKALITC 268 (373)
Q Consensus 200 ~~~~~-~~~i~---~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~-~~~~~i~~s 268 (373)
..... .+.++ ......+.+. +.. .+.++..+....+....|+|.|.+......+|+|||+ ++||++..+
T Consensus 155 ~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~faf~G~E~~a~~a~E~knP~r~~PrAi~~~ 234 (507)
T TIGR00910 155 AGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINELENPGRDYPLAMILL 234 (507)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCcccccHHHHHHHHHHHHhcHHHHHHHHHHccCCcccccHHHHHH
Confidence 22111 11111 1111111111 100 0111111233444456889999999999999999997 699999999
Q ss_pred HHHHHHHHHHHHH
Q 017309 269 FALCVLIYGGVAV 281 (373)
Q Consensus 269 ~~~~~~~Y~~~g~ 281 (373)
+.++.++|....+
T Consensus 235 ~i~~~~l~~l~~~ 247 (507)
T TIGR00910 235 MIAAICLDAIGGF 247 (507)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999976544
No 54
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.91 E-value=3.1e-07 Score=81.91 Aligned_cols=215 Identities=16% Similarity=0.135 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHhHhhhHH---HHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcCcchhhHHH
Q 017309 50 QTIFNGINVMAGVGLLST---PYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLLIS 126 (373)
Q Consensus 50 ~~~~~l~~~~iG~Gil~l---P~~~~~~G~~g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~ 126 (373)
+-.+-.+.+++|+|.=+= =+-|.+-|+-|....++++++-..+.....+.. ++-+..+|.|.-+..+||+...+.|
T Consensus 7 ~~~f~~ig~~vGAGfAsGqEi~QFF~~~G~~s~~gIivs~vlf~~~g~vim~ig-~~f~a~~y~~~~~~v~~~~~~ki~d 85 (349)
T COG3949 7 RWAFAFIGTVVGAGFASGQEIMQFFGKYGVYSILGIILSTVLFTLSGAVIMTIG-KKFNATSYREILKYVSGPKFAKIID 85 (349)
T ss_pred HHHHHHHHHhhcccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH-HHhcccchHHHHHHHhhHHHHHHHH
Confidence 345667779999997653 334456666677778888888888888888875 4888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhhHHHHHHHHHHHHHHH
Q 017309 127 VLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVL 206 (373)
Q Consensus 127 i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~ 206 (373)
+.+.++.++.++....-.++.+.+...- +.+.-.++...++..+.+.++.+.+-.++.+-+...+....
T Consensus 86 ~~iif~lf~~~vVM~AGags~~~e~~~l-----------P~wiGali~i~~v~i~lfl~~vegi~tvn~iI~P~LIi~l~ 154 (349)
T COG3949 86 IIIIFFLFSTAVVMLAGAGSLLEEMFGL-----------PYWIGALIIILLVLILLFLGRVEGIITVNGIITPFLIIILV 154 (349)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHhCc-----------cHHHHHHHHHHHHHHHHHHhcccceeeeheeHHHHHHHHHH
Confidence 9999999999999998888888776532 13333355555566566777788887777766655554433
Q ss_pred hhheeccccCcc--cC-CCCccccccchhhhhhhHhhhcc-cceehhhHhhhccCchhhHHHHHHHHHHHHHHHHH
Q 017309 207 CVLFLGTIEGIG--FH-PTGQVVKWSGMPFAIGIYGFCYS-GHSVFPNIYQSMADKTKFTKALITCFALCVLIYGG 278 (373)
Q Consensus 207 ~i~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~faf~-~~~~~~~i~~~m~~p~~~~~~i~~s~~~~~~~Y~~ 278 (373)
.+...+...+.+ .+ ......+|+. .+.+-..+... +..++.++-++|+++++..+....+-.+.+++-..
T Consensus 155 ~v~~~~~f~~~~~~a~~~~~~~~~W~~--~~~~Y~alNi~~~~avLv~lg~~~~~~~~~~~g~l~gglIlgvl~~l 228 (349)
T COG3949 155 LVTLSFQFTNLGNAAQIVLTKQGNWKA--SAVGYGALNILVAVAVLVPLGGRMESRKVSGIGGLIGGLILGVLLFL 228 (349)
T ss_pred HHHHHHHHhhccchhhhcCCcCCChHH--HHHhhhhHHHHhHhHhhhhhcccccccchhhhhhhhhhHHHHHHHHH
Confidence 333222221111 11 1111223321 22222233333 44567778899999987665555444444443333
No 55
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.44 E-value=0.00031 Score=68.09 Aligned_cols=293 Identities=14% Similarity=0.085 Sum_probs=160.7
Q ss_pred CCCHHHHHHHHHHHHHhHhhhHHHHHHHhh--cHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcCcch
Q 017309 45 GCSFTQTIFNGINVMAGVGLLSTPYTVKEA--GWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYG 121 (373)
Q Consensus 45 ~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~--G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~ 121 (373)
+.++++-+..-++..+...-+......... ++. +++..++..++...-..+...... +.+ .++..+.|..||.++
T Consensus 13 ~~~~~~~~~~W~~~~~~v~~~~~Ga~l~~~GLs~~~ailai~lG~~i~~~~~~l~~~~G~-r~G-l~~~v~sR~~FG~~G 90 (442)
T TIGR00800 13 TWSFLNYFSLWLGAAFNIATWAIGALGLPLGLSWWQSVIAIILGNLLGGIFVALNSRAGA-KYG-LPFPVLSRASFGIYG 90 (442)
T ss_pred CccHHHHHHHHHHHhhhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHhhhhHH-HhC-CCcchhhhhhhhhhH
Confidence 346666666666655555554444433333 334 555555444444443334433322 222 356677999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCC--CcccC-chhHHHHHHHHHHHhhhcccCCchhhHHHHHHH
Q 017309 122 RLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWP--GFQLD-STHLFGILTALIVLPTIWLRDLRVISYLSATGV 198 (373)
Q Consensus 122 ~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~--~~~~~-~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~ 198 (373)
..+..++..+...|-........++.+..++........ +.+.+ ......++...+.+++......+..++....+.
T Consensus 91 s~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~~~~g~~~~~~~~~~a~ 170 (442)
T TIGR00800 91 SLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFLFFFGYKIRHLFEWLAV 170 (442)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 999999999999888888888888888777655422100 00000 112233444555555555555555555666555
Q ss_pred HHHHHHHHhhheeccc-cCc-c-cCCC---CccccccchhhhhhhHh-hhcccceehhhHhhhccCchhhHHHHHHHHHH
Q 017309 199 VATILIVLCVLFLGTI-EGI-G-FHPT---GQVVKWSGMPFAIGIYG-FCYSGHSVFPNIYQSMADKTKFTKALITCFAL 271 (373)
Q Consensus 199 ~~~~~~~~~i~~~~~~-~~~-~-~~~~---~~~~~~~~~~~~~~~~~-faf~~~~~~~~i~~~m~~p~~~~~~i~~s~~~ 271 (373)
...+..++..++.... ++. + .+.. ........+..++.... +.-....+.+...+.+|+|++-.+....++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~~~~~~~~~~~~~~~~~ 250 (442)
T TIGR00800 171 VPPFAAFGMLIWALSKAHGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFGKSKKTAIWGQFLALPG 250 (442)
T ss_pred HHHHHHHHHHHHHHHHcCCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhcCCccchHHHHHHHHHH
Confidence 4444333333322211 111 1 0011 11222334555554433 33345568889999999988777677888888
Q ss_pred HHHHHHHHHHHHHHH----hcCCchh--hhhhcCCCchHHHH-----HHHHHHHHHHH-HhhhhhhchhHHHHHHHcCCC
Q 017309 272 CVLIYGGVAVMGFLM----FGQGTLS--QITLNMPPHAFASK-----VAVWTTVINPF-TKYALLMNPLARSIEELLPAG 339 (373)
Q Consensus 272 ~~~~Y~~~g~~gy~~----fg~~~~~--~il~n~~~~~~~~~-----i~~~~~~i~~~-~s~pl~~~~~~~~~~~~~~~~ 339 (373)
..+....+|+.+... +|+...+ .+...+........ ..+++.++..+ ..--.+.++....+.+.+++.
T Consensus 251 ~~~~~~~~g~~~a~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~f~~~~~vl~~~~t~~~~N~ys~~l~l~~l~~~~ 330 (442)
T TIGR00800 251 GFTLTCFFGILGAAAAYAAYGEPYWSPLDILARFLGLTYAVGARAVFGFGFCFVVAQLSTNISANSYSAGLDIAALLPKY 330 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcccCHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHhCcCc
Confidence 888888888877765 7654322 23333332211110 11122223222 466677888888888888654
No 56
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.40 E-value=0.00035 Score=66.22 Aligned_cols=213 Identities=16% Similarity=0.099 Sum_probs=135.7
Q ss_pred HHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchh
Q 017309 111 DIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVI 190 (373)
Q Consensus 111 ~l~~~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l 190 (373)
.++|..||.++.++..+.+.+.+.|-.....+..++..... .. . +..++.++..+++.-.+.. ..+.+
T Consensus 85 i~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~-~~---------~-~~~~~ili~g~l~~l~~if-G~r~l 152 (442)
T COG1457 85 ILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSG-TG---------L-PVWAGILIIGVLMTLVTIF-GYRAL 152 (442)
T ss_pred eeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccC-CC---------C-cHHHHHHHHHHHHHHHHHH-hHHHH
Confidence 45889999999999999999999999999988888872221 11 1 1344555555555544444 66666
Q ss_pred hHHHHHHHHHHHHHHHhhheeccc--cCcccCCCCccccccchhhhhhhHhhhcc-cceehhhHhhhccCch--hhHHHH
Q 017309 191 SYLSATGVVATILIVLCVLFLGTI--EGIGFHPTGQVVKWSGMPFAIGIYGFCYS-GHSVFPNIYQSMADKT--KFTKAL 265 (373)
Q Consensus 191 ~~~s~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~faf~-~~~~~~~i~~~m~~p~--~~~~~i 265 (373)
..++..+...........++.... +..+......+.++.++..++....-.+. .-+......+.+|+|+ |.-...
T Consensus 153 ~~l~~~a~~~~~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~~~~t~~~~~~~~ 232 (442)
T COG1457 153 HKLERIAVPLLLLLFLYLLALLFRSKGGLDALWVKGPTSPLSFLSALSLVIGSFASWGPYAADYSRYAPSPTPSKAFLAA 232 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccceeeccCCCcchhHHHHHHHHHHHHHhhhhhhhhhhhhcCCCchHHHHHHH
Confidence 666666655555444444433322 12222223335555566665555444443 4446677778888888 555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhhcCCCchHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHcCC
Q 017309 266 ITCFALCVLIYGGVAVMGFLMFGQGT-LSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPA 338 (373)
Q Consensus 266 ~~s~~~~~~~Y~~~g~~gy~~fg~~~-~~~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~ 338 (373)
..+......+-.++|.....+-|+.. ..++...+.+ ....+.+..+++...+--.++++..-.+.+.+++
T Consensus 233 ~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~G~---~g~~~~lil~l~~~ttN~~nlYsa~ls~~~i~~~ 303 (442)
T COG1457 233 VLGFFLGTSFMMILGAALAAAAGNADSIADVMLGLGG---FGLPAILILVLGTVTTNANNLYSAGLSFANIIPK 303 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhccc---HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhhh
Confidence 67777777788888888888888765 3333333332 3345666677788888888888888777777754
No 57
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.39 E-value=0.0013 Score=64.36 Aligned_cols=237 Identities=13% Similarity=0.031 Sum_probs=132.6
Q ss_pred CcccCCCCCCHHHHHHHHHHHHHhHh-hhHHHHHHHhhcHH-HHHHHH--HHHHHH-HHHHHHHHHhhhhCCCCCChHHH
Q 017309 38 GELPIAHGCSFTQTIFNGINVMAGVG-LLSTPYTVKEAGWA-SLVVLL--LFAVVC-CYTASLMRYCFESKEGITTYPDI 112 (373)
Q Consensus 38 ~~~~~~~~~s~~~~~~~l~~~~iG~G-il~lP~~~~~~G~~-g~i~~~--~~~~~~-~~~~~~l~~~~~~~~~~~~y~~l 112 (373)
|-.-..|+.+++.....+..+.+|++ +++.|....+.|+. ...... ..+.+. .+-...+.+.. ++.+..|..|+
T Consensus 34 dy~~agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~T~~e~ 112 (471)
T TIGR02119 34 EYFLGGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMIQVPTGYFVLGVLGKKFAIIS-RKYNAITINDV 112 (471)
T ss_pred ceeEeCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCccHHHH
Confidence 44556788999999999999999987 46788888888864 111111 111111 11122222332 36788999999
Q ss_pred HHHhcCcc-hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhh
Q 017309 113 GEAAFGKY-GRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVIS 191 (373)
Q Consensus 113 ~~~~~G~~-~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~ 191 (373)
-++-||++ .+.+..++..+..++...+.+...+..++.+.+- + .+...++..++++-.+..-.++...
T Consensus 113 l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~gi----------~-~~~~iii~~~iv~iYt~~GG~~av~ 181 (471)
T TIGR02119 113 LKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTGL----------S-YLTALFIFSSSVLIYTTFGGFRAVA 181 (471)
T ss_pred HHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----------C-HHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 99999965 5667777777777766666677677777766531 1 3344455555566677777889888
Q ss_pred HHHHHHHHHHHHHHHhhheeccc--cCcc-----cCC-CCc---cc---cc--cchhhhhh-hHhhhcccceehhhHhhh
Q 017309 192 YLSATGVVATILIVLCVLFLGTI--EGIG-----FHP-TGQ---VV---KW--SGMPFAIG-IYGFCYSGHSVFPNIYQS 254 (373)
Q Consensus 192 ~~s~~~~~~~~~~~~~i~~~~~~--~~~~-----~~~-~~~---~~---~~--~~~~~~~~-~~~faf~~~~~~~~i~~~ 254 (373)
+...+-.+.++...+.+...... ++.+ .++ ++. +. ++ ..+...+. ...+...+.+....-.-.
T Consensus 182 ~td~iQ~~v~~~~~~~~~~~~l~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~~R~~a 261 (471)
T TIGR02119 182 LTDAIQGIVMFTGTTILLIAVIKAGGGVEKIMEKLKDIDPNLITPFGGDGGLTKPFVASFWILVGIGVIGLPQTAVRCMS 261 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCccccCCCCCCcchhhhHHHHHHHHHHHHHhCchHHHHHHHh
Confidence 88877765544433322221111 1110 000 000 11 10 01111111 112222233333223344
Q ss_pred ccCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017309 255 MADKTKFTKALITCFALCVLIYGGVAVMGFLM 286 (373)
Q Consensus 255 m~~p~~~~~~i~~s~~~~~~~Y~~~g~~gy~~ 286 (373)
.||+++.+|....+......++....+.|...
T Consensus 262 ak~~~~a~~~~~~~~~~~~~~~~~~~~~G~~a 293 (471)
T TIGR02119 262 YKDSKAMHRAMIIGTIVVGIIMLGMHLAGVLG 293 (471)
T ss_pred cCCHHHHhhhHhHHHHHHHHHHHHHHHHHHhh
Confidence 66777888888877766666666555555443
No 58
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=98.29 E-value=0.0025 Score=62.57 Aligned_cols=155 Identities=20% Similarity=0.157 Sum_probs=108.8
Q ss_pred ccCcccCCCCCCHHHHHHHHHHHHHh-HhhhHHHHHHHhhcHH-HHHHHH---HHHHHHHHHHHHHHHhhhhCCCCCChH
Q 017309 36 LTGELPIAHGCSFTQTIFNGINVMAG-VGLLSTPYTVKEAGWA-SLVVLL---LFAVVCCYTASLMRYCFESKEGITTYP 110 (373)
Q Consensus 36 ~~~~~~~~~~~s~~~~~~~l~~~~iG-~Gil~lP~~~~~~G~~-g~i~~~---~~~~~~~~~~~~l~~~~~~~~~~~~y~ 110 (373)
.+|....+|+.+.+-.......+.++ .-++++|....+.|+. .++... ...+.-.+-...+.+.. ++++..|..
T Consensus 30 ~~dy~~~gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~-~~~~~~T~~ 108 (493)
T COG0591 30 LEDYFLGGRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLA-KARGATTIP 108 (493)
T ss_pred hHHHhccCCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccCCccHH
Confidence 34445566777888777777777777 6688999999999986 333332 33344444555555555 578889999
Q ss_pred HHHHHhcC-cchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCch
Q 017309 111 DIGEAAFG-KYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRV 189 (373)
Q Consensus 111 ~l~~~~~G-~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~ 189 (373)
|+-++=|| |+.+.+..+...+.....+..-+...+..++.... .. ...-..+...++...+..-.++.
T Consensus 109 d~l~~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g-i~----------~~~~~~~~~~~v~~Yt~~gG~~a 177 (493)
T COG0591 109 DFLEARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG-IS----------YVTGILIGALIVALYTFLGGLRA 177 (493)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CC----------HHHHHHHHHHHHHHHHHHcChhH
Confidence 99999999 88999999999999999999999999988865544 21 23333444555555666667777
Q ss_pred hhHHHHHHHHHHH
Q 017309 190 ISYLSATGVVATI 202 (373)
Q Consensus 190 l~~~s~~~~~~~~ 202 (373)
..+...+-...+.
T Consensus 178 v~~Td~iqg~im~ 190 (493)
T COG0591 178 VVWTDFIQGLIML 190 (493)
T ss_pred HHHHHHHHHHHHH
Confidence 7777665544433
No 59
>PRK11375 allantoin permease; Provisional
Probab=98.29 E-value=0.0018 Score=63.40 Aligned_cols=257 Identities=14% Similarity=0.079 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcCcchhhHHHHHHH-HHHHHHHHHHHHHhhhhhhhhcCCCC
Q 017309 78 SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLLISVLLY-TELYSYCVEFIILEGDNLTSLFPGAS 156 (373)
Q Consensus 78 g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~i~~~-~~~~g~~~~y~i~~~~~l~~~~~~~~ 156 (373)
+++..++..++...-+.+...... + ...++.-+.|..||.+|.++..++.. +...|=........++.+..++....
T Consensus 62 ai~ai~lG~~i~~~~~~l~g~~G~-~-~Gl~~~v~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~ 139 (484)
T PRK11375 62 IMLAIILSAFFIAAVMVLNGAAGS-K-YGVPFAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIW 139 (484)
T ss_pred HHHHHHHHHHHHHHHHHHhccccc-c-cCCChhHhHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444444444444433333333321 1 12467888999999999888877763 34444444445555666554432221
Q ss_pred CC---------CCCcccCchhHHHHHHHHHHHhhhcccCCchhhHHHHHHHHHHHHHHHhhheeccc-cCcc----cCCC
Q 017309 157 LD---------WPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVLCVLFLGTI-EGIG----FHPT 222 (373)
Q Consensus 157 ~~---------~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~i~~~~~~-~~~~----~~~~ 222 (373)
.. ..+.... .....++..++..++.. ...+.++++..++........+...+.... .+.+ .++.
T Consensus 140 ~~~~~~~~~~~~~g~~~~-~~i~~~i~~~l~~~~~~-~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~~~~~~~ 217 (484)
T PRK11375 140 PGFLTLGGDFTLLGLSLP-GLITFLIFWLVNVGIGF-GGGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPS 217 (484)
T ss_pred ccccccccccccCCCcHH-HHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCcc
Confidence 10 0111111 12223344455555544 477777777777665554433332222111 1111 1011
Q ss_pred Cccc---cccchhhhhhhHhhhcc-cceehhhHhhhccCchhhHHHHHHHHHHHHHHHHHHHHHH----HHHhcCCc--h
Q 017309 223 GQVV---KWSGMPFAIGIYGFCYS-GHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVAVMG----FLMFGQGT--L 292 (373)
Q Consensus 223 ~~~~---~~~~~~~~~~~~~faf~-~~~~~~~i~~~m~~p~~~~~~i~~s~~~~~~~Y~~~g~~g----y~~fg~~~--~ 292 (373)
.... ....+..++...+-++. ...+.+...+..|++++-.+....+..+...+...+|++. ...||+.. .
T Consensus 218 ~~~~~~~~~~~~~~~i~~vig~~~~~~~~~~D~tRy~k~~~~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp 297 (484)
T PRK11375 218 GIQKAENSGFLFLVVINAVVAVWAAPAVSASDFTQNAHSFRAQALGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNV 297 (484)
T ss_pred cccCCcchHHHHHHHHHHHHHHHHHHHccccchhcccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCH
Confidence 0100 01123334433333444 4558889999999988766666666666666655555443 34555433 2
Q ss_pred hhhhhcCCCchHHHHHHHHHHHHHHHHh-hhhhhchhHHHHHHHcCCC
Q 017309 293 SQITLNMPPHAFASKVAVWTTVINPFTK-YALLMNPLARSIEELLPAG 339 (373)
Q Consensus 293 ~~il~n~~~~~~~~~i~~~~~~i~~~~s-~pl~~~~~~~~~~~~~~~~ 339 (373)
.+++.++. +.....++-+..+++.+.+ ...++++.-..+.+++++.
T Consensus 298 ~~i~~~~~-~~~~~~~a~l~~v~a~~~tN~~~N~ys~~~~l~~l~pk~ 344 (484)
T PRK11375 298 LDIVQRWD-SLFASFFAVLVILMTTISTNATGNIIPAGYQIAALAPTK 344 (484)
T ss_pred HHHHHHhc-chHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHhCcCc
Confidence 23444443 2333333445555666666 3468899989999999765
No 60
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.28 E-value=0.0014 Score=62.79 Aligned_cols=149 Identities=18% Similarity=0.087 Sum_probs=101.2
Q ss_pred CCCCCHHHHHHHHHHHHHhHh-hhHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcCcc-
Q 017309 43 AHGCSFTQTIFNGINVMAGVG-LLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKY- 120 (373)
Q Consensus 43 ~~~~s~~~~~~~l~~~~iG~G-il~lP~~~~~~G~~g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~- 120 (373)
.|+.+++...+.+..+.+|++ .++.|....+.|+.+....+..........+++.+..+ +.+..|..|+.++-||++
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~T~~e~l~~Ryg~~~ 80 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYAYGFAIGFYELGALVLLIILGWLFVPIFI-NNGAYTMPEYLEKRFGKRI 80 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCchhHHHHHHhCchH
Confidence 467889999999999888886 56799988888865333333233333334445555433 566899999999999984
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhhHHHHHHHHH
Q 017309 121 GRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVA 200 (373)
Q Consensus 121 ~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~ 200 (373)
.+.+..+...+..+......+...+..++.+.+- + .+...++..+++.-.+..-.++...+...+-.+.
T Consensus 81 ~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~gi----------~-~~~~~ii~~~i~~~Yt~~GG~~av~~Td~iQ~~i 149 (407)
T TIGR00813 81 LRGLSVLSLILYIFLYMSVDLFSGALLIELITGL----------D-LYLSLLLLGAITILYTVFGGLKAVVWTDTIQAVI 149 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc----------h-HHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHH
Confidence 6666666667777777777777778887776531 1 2334455555555667777888888887776555
Q ss_pred HHH
Q 017309 201 TIL 203 (373)
Q Consensus 201 ~~~ 203 (373)
++.
T Consensus 150 ~~~ 152 (407)
T TIGR00813 150 MIL 152 (407)
T ss_pred HHH
Confidence 443
No 61
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.26 E-value=0.0027 Score=62.28 Aligned_cols=156 Identities=10% Similarity=-0.020 Sum_probs=97.3
Q ss_pred cCcccCCCCCCHHHHHHHHHHHHHhHh-hhHHHHHHHhhcHHH-HHHH--HHHHH-HHHHHHHHHHHhhhhCCCCCChHH
Q 017309 37 TGELPIAHGCSFTQTIFNGINVMAGVG-LLSTPYTVKEAGWAS-LVVL--LLFAV-VCCYTASLMRYCFESKEGITTYPD 111 (373)
Q Consensus 37 ~~~~~~~~~~s~~~~~~~l~~~~iG~G-il~lP~~~~~~G~~g-~i~~--~~~~~-~~~~~~~~l~~~~~~~~~~~~y~~ 111 (373)
+|-.-.+|+.+++...+.+..+.+|++ .++.|....+.|+.. .... ..... ...+-...+.+.. ++.+..|..|
T Consensus 34 ~dy~~agr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-r~~~~~T~~e 112 (483)
T PRK09442 34 NEYFLGNRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILA-RKYNAVTLND 112 (483)
T ss_pred cceeeeCCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCccHHH
Confidence 344555778999999999999888885 567888887778642 1111 11111 1112222333333 3667899999
Q ss_pred HHHHhcCcc-hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchh
Q 017309 112 IGEAAFGKY-GRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVI 190 (373)
Q Consensus 112 l~~~~~G~~-~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l 190 (373)
+.++-||++ .+.+..+...+..++.....+...+..++.+.+ ++ .....++..++++-.+..-.++..
T Consensus 113 ~l~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g----------i~-~~~~iii~~~iv~iYt~~GGl~av 181 (483)
T PRK09442 113 MLRARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG----------IS-YETGLLIFGITVALYTAFGGFRAV 181 (483)
T ss_pred HHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CC-HHHHHHHHHHHHHHHHHhccHHHH
Confidence 999999865 455555555555555566666667777776643 11 233445555555667777788888
Q ss_pred hHHHHHHHHHHHHH
Q 017309 191 SYLSATGVVATILI 204 (373)
Q Consensus 191 ~~~s~~~~~~~~~~ 204 (373)
.+...+-.+.++..
T Consensus 182 ~~TD~iQ~~i~~~~ 195 (483)
T PRK09442 182 VLTDALQGIVMLVG 195 (483)
T ss_pred HHHHHHHHHHHHHH
Confidence 88877765554443
No 62
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.21 E-value=0.0002 Score=68.63 Aligned_cols=247 Identities=9% Similarity=0.034 Sum_probs=136.0
Q ss_pred ccCCCCCCHHHHHHHHHH---HHHhHhhhHHHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHH
Q 017309 40 LPIAHGCSFTQTIFNGIN---VMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEA 115 (373)
Q Consensus 40 ~~~~~~~s~~~~~~~l~~---~~iG~Gil~lP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~ 115 (373)
.+.+|+-++++.+..-++ ..-|.. -++.+....+|.. -.-.+++.+..+.-+..-|.|.+...|......--+.+
T Consensus 44 qef~R~fs~~s~fg~sFs~~g~~~~i~-tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~Sa~PtsGgLy~waa~ 122 (550)
T KOG1289|consen 44 QELKREFSLFSIFGISFSLMGLLPGIA-TSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCSAMPTSGGLYFWAAV 122 (550)
T ss_pred hhhhhhhhHHHHHHHHHHHhcchhhhh-hheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHhhCCCCCcHHHHHHH
Confidence 345566666665543332 222211 2466666767766 33336777788888888999988878888777766666
Q ss_pred hcCcchhhHHHHH-HHHHHHHHHHHHHH---HhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcc--cCCch
Q 017309 116 AFGKYGRLLISVL-LYTELYSYCVEFII---LEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWL--RDLRV 189 (373)
Q Consensus 116 ~~G~~~~~~~~i~-~~~~~~g~~~~y~i---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~--~~l~~ 189 (373)
.-+|+.+.+..+. -+....|....... ..++.+.....-...+... .+.+ ...+..++.+..+++ ..-+.
T Consensus 123 lap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l~np~y~~---~~~~-~~~v~~ai~~v~~lln~~p~r~ 198 (550)
T KOG1289|consen 123 LAPPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSLTNPNYEP---TNYH-QFGVFEAILFVHGLLNSLPTRV 198 (550)
T ss_pred hcCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhhcCCCCcc---cceE-eehHHHHHHHHHHHHhcCCcHH
Confidence 6676655444332 22222222222222 2222222222211111111 1111 112222222222322 23466
Q ss_pred hhHHHHHHHHHHHHHHHhhheecc---ccCcccCCCC-------cccccc----chhhhhhhHhhhcccceehhhHhhhc
Q 017309 190 ISYLSATGVVATILIVLCVLFLGT---IEGIGFHPTG-------QVVKWS----GMPFAIGIYGFCYSGHSVFPNIYQSM 255 (373)
Q Consensus 190 l~~~s~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~-------~~~~~~----~~~~~~~~~~faf~~~~~~~~i~~~m 255 (373)
+++++.+++...++.++..++... .+..++++.. ...+|+ .+..++-...+.+.|-....++.+|-
T Consensus 199 l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~afil~f~~~~wt~sGyDa~~H~aEE~ 278 (550)
T KOG1289|consen 199 LARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGWAFILGFFNPAWTMSGYDAAAHMAEET 278 (550)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchHHHHHhhccceeEEeccCchHHHHHHh
Confidence 777777776665554443332211 1111222211 122222 34456777888999999999999999
Q ss_pred cCch-hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 017309 256 ADKT-KFTKALITCFALCVLIYGGVAVMGFLMFGQGT 291 (373)
Q Consensus 256 ~~p~-~~~~~i~~s~~~~~~~Y~~~g~~gy~~fg~~~ 291 (373)
||++ +.||.+..+..+..++=.++-+.-..+-+++.
T Consensus 279 ~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~ 315 (550)
T KOG1289|consen 279 KNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDL 315 (550)
T ss_pred cchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 9997 68999999998888877777776666666543
No 63
>PRK12488 acetate permease; Provisional
Probab=98.19 E-value=0.0085 Score=59.71 Aligned_cols=153 Identities=13% Similarity=0.074 Sum_probs=101.2
Q ss_pred CcccCCCCCCHHHHHHHHHHHHHhHh-hhHHHHHHHhhcHHHHHHHHHHHHHHHH-HHHHHHHhhhhCCCCCChHHHHHH
Q 017309 38 GELPIAHGCSFTQTIFNGINVMAGVG-LLSTPYTVKEAGWASLVVLLLFAVVCCY-TASLMRYCFESKEGITTYPDIGEA 115 (373)
Q Consensus 38 ~~~~~~~~~s~~~~~~~l~~~~iG~G-il~lP~~~~~~G~~g~i~~~~~~~~~~~-~~~~l~~~~~~~~~~~~y~~l~~~ 115 (373)
|.--..|+.+++...+.+..+.++++ .++.|....+.|+.+....+.. .+.+. ...++.+-.+ +.+..|..|.-++
T Consensus 61 df~laGR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~~~~~~~g~-~~g~~~~~~~~a~~lr-~~g~~T~~d~l~~ 138 (549)
T PRK12488 61 DFYTAGGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYDGLLYALGV-LAGWPIILFLIAERLR-NLGKYTFADVVSY 138 (549)
T ss_pred HHeeeCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHH-HHHHHHHHHHHHHHHH-HCCCcchHHHHHH
Confidence 33445688999999999999999887 5789998888897643222211 11111 2233443333 5567899999988
Q ss_pred hcC-cchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhhHHH
Q 017309 116 AFG-KYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLS 194 (373)
Q Consensus 116 ~~G-~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s 194 (373)
=|| |+.+.+..+...+.........+...+..++.+++- + .+.-+++..+++.-.+..-.++...+..
T Consensus 139 Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~gi----------~-~~~~iii~~~i~~~Yt~~GGm~av~~td 207 (549)
T PRK12488 139 RLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFGI----------S-YLYAVVIVGALMVLYVTFGGMLATTWVQ 207 (549)
T ss_pred HcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----------C-HHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 887 568888877777776666777777777777766431 1 2334455555666667777888888887
Q ss_pred HHHHHHHHH
Q 017309 195 ATGVVATIL 203 (373)
Q Consensus 195 ~~~~~~~~~ 203 (373)
.+-.+.++.
T Consensus 208 ~iQ~~im~~ 216 (549)
T PRK12488 208 IIKAVLLLS 216 (549)
T ss_pred HHHHHHHHH
Confidence 776555443
No 64
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=98.18 E-value=0.002 Score=61.15 Aligned_cols=268 Identities=14% Similarity=0.069 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHHhHhhhHHHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcCcchhhHHHH
Q 017309 49 TQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLLISV 127 (373)
Q Consensus 49 ~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~i 127 (373)
....+++.+-..|+.... .++- +++..++..++...-..+...... +. ..++.-+.|..||+++..+..+
T Consensus 8 ~~~~~~v~~~~~G~~l~~-------L~~~~ai~aiilG~~i~~~~~~l~~~~G~-~~-Gl~~~v~sR~~FG~~Gs~~~~~ 78 (386)
T TIGR02358 8 FGAAISIAEIQTGALLAP-------LGLTRGLLAILLGHLVGVLLLSAAGVIGA-DT-GLSAMGSLKLSLGSKGSVLPSL 78 (386)
T ss_pred HHHHhhHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHHhhc-cc-CcCHHHHHHHHHccchhhHHHH
Confidence 334445555555543211 4444 444444444444333333333321 22 2367788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhhHHHHHHHHHHHHHHHh
Q 017309 128 LLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVLC 207 (373)
Q Consensus 128 ~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~ 207 (373)
...+...|-........++.++.+++..... +....+..+..++..+.+.. ..+.++++..++..+.....+.
T Consensus 79 l~~i~~igW~~v~~~~gg~~l~~~~~~~~~~------~~~~~~~~i~~~l~~~~~~~-G~~~i~~~~~~~~~~~~i~~~~ 151 (386)
T TIGR02358 79 LNLLQLVGWTAVMIIVGAKAASLLGGRLFGE------ESPMLWILIVGILVTLWLLS-GPLAFVWLNNWSVWLLLIATLW 151 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888877543211 11223334444444444443 7788888888777666555444
Q ss_pred hheecccc-CcccCCCCccccccchhhhhhhHh-hhcccceehhhHhhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 017309 208 VLFLGTIE-GIGFHPTGQVVKWSGMPFAIGIYG-FCYSGHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVAVMGFL 285 (373)
Q Consensus 208 i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-faf~~~~~~~~i~~~m~~p~~~~~~i~~s~~~~~~~Y~~~g~~gy~ 285 (373)
..+....+ +.+.... +..+ ..+..++.... +.-......+...+..|+|+|.-.....+..+...+...+|.....
T Consensus 152 ~~~~~~~~~~~~~~~~-~~~~-~s~~~~~~~~~~~~~swa~~~~DysRy~k~~~~~~~~~~~G~~i~~~~~~~~G~~~~~ 229 (386)
T TIGR02358 152 LLVVVFSKADLSELWN-RAGD-MSFAVAVELVIAMPLSWLPLIADYTRFARNPRHVFLGTVLGYFIGSCWMYFLGLAVTL 229 (386)
T ss_pred HHHHHHhccchhhhcC-CCCC-ccHHHHHHHHHHHHHHHHHHccchhhhcCCCcceehHHHHHHHHHHHHHHHHHHHHHH
Confidence 33222111 1110011 1111 22333322221 1112334578888888888887778888888888888889988877
Q ss_pred HhcCCchhhhhhcCCCchHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHcCC
Q 017309 286 MFGQGTLSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPA 338 (373)
Q Consensus 286 ~fg~~~~~~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~ 338 (373)
+.++.....+..... . ....-+..+++...+-..+.++....+.+.+++
T Consensus 230 a~~~~d~~~~~~~~g---~-~~~~~~~~~l~~~~~n~~N~ys~~l~l~~l~~~ 278 (386)
T TIGR02358 230 ATGQTDIISILAGAG---L-GIPALLIILLSTVTTTFMDIYSAAISTGNLLPR 278 (386)
T ss_pred hcCCCCHHHHHHhcc---H-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 776543333333221 1 123334455666677778888888888888754
No 65
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=98.12 E-value=0.0059 Score=58.06 Aligned_cols=148 Identities=14% Similarity=0.194 Sum_probs=87.8
Q ss_pred CCCCHHHHHHHHHHHHHhHh-hhHHHHHHHhhcHHHHHHHH---HHHHHHHHHHHHHHHhhhhCCCCCCh-----HHHHH
Q 017309 44 HGCSFTQTIFNGINVMAGVG-LLSTPYTVKEAGWASLVVLL---LFAVVCCYTASLMRYCFESKEGITTY-----PDIGE 114 (373)
Q Consensus 44 ~~~s~~~~~~~l~~~~iG~G-il~lP~~~~~~G~~g~i~~~---~~~~~~~~~~~~l~~~~~~~~~~~~y-----~~l~~ 114 (373)
++.|.+|+++....+.+|+| |+++|-+....|..+++.+- +.+..+.+.-..+..-.++++++.+| .++-+
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GGpGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi~~ 124 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATAIAIGGPGAVFWMWVTAFIGMATKFVESTLAQKYRERDADGVFRGGPMYYIKK 124 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHHHH
Confidence 45999999999999999998 99999997777643533222 22333333333333333434555558 88988
Q ss_pred HhcCcchhhHHHHHHHHHHHH-HHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhhHH
Q 017309 115 AAFGKYGRLLISVLLYTELYS-YCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYL 193 (373)
Q Consensus 115 ~~~G~~~~~~~~i~~~~~~~g-~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~ 193 (373)
...|||.+.+..++ .+..++ .+....-..++.+++.. ..+ . +...+...++.-+.....++.+..+
T Consensus 125 gl~~k~lg~lfa~~-~i~~f~~~~~~Q~nsi~~~~~~~~----------~~~-~-~v~~i~l~~l~~~vi~GGik~Ia~v 191 (425)
T TIGR00835 125 GLGMRWLAVLFAVF-LIASFGIGNMVQANAIASALSNAF----------NVP-K-LVTGIVLTVLTALIIFGGLKRIAKI 191 (425)
T ss_pred HhCccHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHc----------CCc-H-HHHHHHHHHHHHHHHhcCchHHHHH
Confidence 99999977777766 333323 23333344444444221 111 2 2323333333334455688888888
Q ss_pred HHHHHHHHHHH
Q 017309 194 SATGVVATILI 204 (373)
Q Consensus 194 s~~~~~~~~~~ 204 (373)
+...+..+...
T Consensus 192 ~~~lvP~m~~~ 202 (425)
T TIGR00835 192 SSVVVPFMALL 202 (425)
T ss_pred HHHHHHHHHHH
Confidence 88776665544
No 66
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.07 E-value=0.0037 Score=59.94 Aligned_cols=149 Identities=16% Similarity=0.218 Sum_probs=90.8
Q ss_pred CCCCCHHHHHHHHHHHHHhHh-hhHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcCcch
Q 017309 43 AHGCSFTQTIFNGINVMAGVG-LLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYG 121 (373)
Q Consensus 43 ~~~~s~~~~~~~l~~~~iG~G-il~lP~~~~~~G~~g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~ 121 (373)
.|+.+++...+.+..+.+|++ +++.|....+.|+.+....+............+.+-.+ +.+..|..|+-++-||++.
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~r-~~~~~T~~e~~~~Ryg~~~ 83 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISGLWYAIGYAIGFLLFALFFAPRLR-RSGAVTIPEYLEKRYGSKA 83 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGGGHHHHHHHHHHHHHHHHTHHHHH-HTT--SHHHHHHHHT-HHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeeccccchhHHHHHHHHHHhhc-ccchhhhhhhhhhhcCCch
Confidence 467899999999999999886 56899999999976333333333333444445555544 7778999999999999998
Q ss_pred --hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhhHHHHHHHH
Q 017309 122 --RLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVV 199 (373)
Q Consensus 122 --~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~ 199 (373)
+.+..+...+.........+...+..++.+.+- + .....++..++.+..+..-.++...+...+-.+
T Consensus 84 ~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~gi----------~-~~~~~~i~~~i~~iYt~~GGl~av~~td~iQ~~ 152 (406)
T PF00474_consen 84 LLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFGI----------P-YNTAILIVGVIVIIYTFFGGLRAVAWTDFIQGV 152 (406)
T ss_dssp -HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-------------HHHHHHHHHHHHHHTTCTT------SHHHHHHH
T ss_pred hhhhhcccccchhhhhhhhccccccccchhhccch----------h-hhHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHH
Confidence 666555566666667777777778877776531 1 234445555666667777778888877766655
Q ss_pred HHHH
Q 017309 200 ATIL 203 (373)
Q Consensus 200 ~~~~ 203 (373)
.+++
T Consensus 153 i~~~ 156 (406)
T PF00474_consen 153 IMII 156 (406)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 67
>PRK09395 actP acetate permease; Provisional
Probab=97.93 E-value=0.029 Score=55.97 Aligned_cols=153 Identities=14% Similarity=0.133 Sum_probs=96.9
Q ss_pred CcccCCCCCCHHHHHHHHHHHHHhHh-hhHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHh
Q 017309 38 GELPIAHGCSFTQTIFNGINVMAGVG-LLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAA 116 (373)
Q Consensus 38 ~~~~~~~~~s~~~~~~~l~~~~iG~G-il~lP~~~~~~G~~g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~ 116 (373)
|.--..|+.+++...+.+..+.+|++ .++.|....+.|+.+....+-..+.......++.+-.+ +.+..|+.|+.++=
T Consensus 63 df~~agr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~~~~~~~~~~g~~~~~~~~~~~~r-~~g~~T~~d~l~~R 141 (551)
T PRK09395 63 DFYTAGGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDGLIYSIGFLVGWPIILFLIAERLR-NLGKYTFADVASYR 141 (551)
T ss_pred HHhhcCCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHH
Confidence 33445678999999999999988886 57899988888986432222221111222233444333 56779999999998
Q ss_pred cC-cchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhhHHHH
Q 017309 117 FG-KYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSA 195 (373)
Q Consensus 117 ~G-~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~ 195 (373)
|| |+.+.+..+...+.............+..++.+.+ ++ .+...++..+++.-.+..-.++...+...
T Consensus 142 ygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~g----------i~-~~~~ili~~~i~~iYt~~GGm~av~~TD~ 210 (551)
T PRK09395 142 LKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFG----------LN-YHVAVVLVGVLMMVYVLFGGMLATTWVQI 210 (551)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CC-HHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 98 45777777766665555555666666666666542 11 23344555556666677777888877777
Q ss_pred HHHHHHH
Q 017309 196 TGVVATI 202 (373)
Q Consensus 196 ~~~~~~~ 202 (373)
+-.+.++
T Consensus 211 iQ~iim~ 217 (551)
T PRK09395 211 IKAVLLL 217 (551)
T ss_pred HHHHHHH
Confidence 6544433
No 68
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=97.89 E-value=0.016 Score=54.62 Aligned_cols=269 Identities=16% Similarity=0.149 Sum_probs=131.5
Q ss_pred HHHHHHHHhHhhhHHHHHH-Hhhc--HH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcCcchhhHHHHH
Q 017309 53 FNGINVMAGVGLLSTPYTV-KEAG--WA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLLISVL 128 (373)
Q Consensus 53 ~~l~~~~iG~Gil~lP~~~-~~~G--~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~i~ 128 (373)
+.++...+|+|.|-.|-.. +++| |. +.+.+++.++..-....+ +-.+.+ .+|+++.++. ||+.+.+..+.
T Consensus 2 ~~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~----av~~~g-G~~~~l~~~~-g~~f~~lf~~~ 75 (378)
T TIGR00796 2 FMLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI----ALALVG-GGYDSLSARI-GKVFGILFTVI 75 (378)
T ss_pred hHHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh----eeeecC-CCHHHHHHHh-ChHHHHHHHHH
Confidence 4577889999999988766 5555 44 666666666555443333 111222 4787777765 67777666555
Q ss_pred HHHHHH-------HHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhhHHHHHHHHHH
Q 017309 129 LYTELY-------SYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVAT 201 (373)
Q Consensus 129 ~~~~~~-------g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~ 201 (373)
+.+..- -..++|-.. +..+++.. . .........++...+.+-+ ..|.-|-..++..+-..+.
T Consensus 76 ~~l~iGP~~aiPRtaa~s~e~~----i~p~~~~~-----~-~~~~l~i~siiff~i~~~l-~~~~~k~~~~iGk~LTP~l 144 (378)
T TIGR00796 76 LYLTIGPLFAIPRTATVSFEMG----IAPLLHSP-----T-SLLALFIFSLIFFAVVLLL-SLNPSKLIDRVGKFLTPAL 144 (378)
T ss_pred HHHHHHhchhhhHHHHHHHHHH----HHhccCcc-----c-chHHHHHHHHHHHHHHHHH-HcCcccHHHHhHHHHHHHH
Confidence 543332 122333332 23333220 0 0000111222222222222 2334444444555444444
Q ss_pred HHHHHhhheeccccCcc-cCCCCccccc-cchhhhhhhHhhhcc-------cceehhhHhh-hccCchh-hHHHHHHHH-
Q 017309 202 ILIVLCVLFLGTIEGIG-FHPTGQVVKW-SGMPFAIGIYGFCYS-------GHSVFPNIYQ-SMADKTK-FTKALITCF- 269 (373)
Q Consensus 202 ~~~~~~i~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~faf~-------~~~~~~~i~~-~m~~p~~-~~~~i~~s~- 269 (373)
+...+.++..+...+.+ .+.+.....- ..+.+++-.--++++ +...+..+.+ |+|||+| .++.+..+.
T Consensus 145 Li~l~~lii~g~~~p~g~~~~~~~~~~~~~~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~~~~~~~~~~~i~~G~i 224 (378)
T TIGR00796 145 LVTLLALIIKALLWPAGPILAASGAYASQQAFSKGFLEGYLTMDALAALVFGIIVVNAIRSRGVTKPKKITKYTIKAGLI 224 (378)
T ss_pred HHHHHHHHHHHHHcCCCCcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 44444444444433221 1111111111 235566666666666 7788888877 9999975 455555544
Q ss_pred --HHHHHHHHHHHHHHHHHhc---CC-chhhhhhcCCC---chHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHcCC
Q 017309 270 --ALCVLIYGGVAVMGFLMFG---QG-TLSQITLNMPP---HAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPA 338 (373)
Q Consensus 270 --~~~~~~Y~~~g~~gy~~fg---~~-~~~~il~n~~~---~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~ 338 (373)
+....+|...+.+|...-+ +. ..+.++.+..+ ++....+..+...++++.+---....+.|.+++..++
T Consensus 225 a~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~k 302 (378)
T TIGR00796 225 AAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVPK 302 (378)
T ss_pred HHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4444566666666654322 11 12233332211 1122223334445555555555555577777777653
No 69
>PRK11017 codB cytosine permease; Provisional
Probab=97.83 E-value=0.02 Score=54.81 Aligned_cols=199 Identities=16% Similarity=0.109 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCC
Q 017309 78 SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASL 157 (373)
Q Consensus 78 g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~ 157 (373)
.++..++...+...-..+...... +. ..++..+.|..||.+|..+..+...+...|-........+..+....+.
T Consensus 44 ai~aiilG~~i~~~~~~l~~~~G~-k~-G~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~~--- 118 (404)
T PRK11017 44 FLLAVLIGNLLLGIYTAALGYIGA-KT-GLSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATGL--- 118 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-cc-CcCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCC---
Confidence 444444444443333333333321 22 2467888999999999999888777777665555555556555554321
Q ss_pred CCCCcccCchhHHHHHHHHHHHhhhcccCCchhhHHHHHHHHHHHHHHHhhheeccc--cCcccCCCCccccccchhhhh
Q 017309 158 DWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVLCVLFLGTI--EGIGFHPTGQVVKWSGMPFAI 235 (373)
Q Consensus 158 ~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 235 (373)
+ .....++..++..+.+.. ..+.+++++..+........+...+.... ++.+.-...+..+...+..++
T Consensus 119 -------~-~~~~~~i~~~l~~~~~~~-G~~~i~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~ 189 (404)
T PRK11017 119 -------D-INLLIVLSGLLMTVTAYF-GISALTILSRIAVPAIALLGGYSVWLAVNDVGGLDGLKAIVPAEPLDFSAAL 189 (404)
T ss_pred -------C-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhcCCCCCcccHHHHH
Confidence 1 112334444555554444 45666666666555444333322222211 111100011111223455555
Q ss_pred hhHhhhc-ccceehhhHhhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 017309 236 GIYGFCY-SGHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVAVMGFLMFGQG 290 (373)
Q Consensus 236 ~~~~faf-~~~~~~~~i~~~m~~p~~~~~~i~~s~~~~~~~Y~~~g~~gy~~fg~~ 290 (373)
....-.+ ....+.+...+..|+|++.-.....+..+...+...+|.......|+.
T Consensus 190 ~~~~g~~~~~~~~~~DysRy~k~~~~~~~~~~lg~~i~~~~~~~~G~~~a~~~~~~ 245 (404)
T PRK11017 190 TLVVGSFISGGTLTADFVRFGRSAKIAVLATMVAFFLGNSLMFIFGAAGAAVYGQA 245 (404)
T ss_pred HHHHHHHHHhHhcCCChHhhccCccceeehhHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 4433333 345678888888888776445555666666666667777666666653
No 70
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=97.74 E-value=0.061 Score=53.67 Aligned_cols=150 Identities=13% Similarity=0.128 Sum_probs=95.6
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhH-hhhHHHHHHHhhcHHHHHHHHHHHHHHH-HHHHHHHHhhhhCCCCCChHHHHHHhc
Q 017309 40 LPIAHGCSFTQTIFNGINVMAGV-GLLSTPYTVKEAGWASLVVLLLFAVVCC-YTASLMRYCFESKEGITTYPDIGEAAF 117 (373)
Q Consensus 40 ~~~~~~~s~~~~~~~l~~~~iG~-Gil~lP~~~~~~G~~g~i~~~~~~~~~~-~~~~~l~~~~~~~~~~~~y~~l~~~~~ 117 (373)
--..|+.+++...+.+..+.+++ ..++.|....+.|+.+....+. ..+.+ ....++.+-.+ +.+..|..|..++=|
T Consensus 63 ~laGr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~~~~~~~g-~~~~~~i~~~~~a~~lr-r~g~~T~~d~l~~Rf 140 (549)
T TIGR02711 63 YTAGGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYDGLIYSLG-FLVGWPIILFLIAERLR-NLGRYTFADVASYRL 140 (549)
T ss_pred eeeCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH-HHHHHHHHHHHHHHHHH-HcCCccHHHHHHHHc
Confidence 34567888898888888888876 4678999888888764333221 11222 22334444433 556789999998888
Q ss_pred C-cchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhhHHHHH
Q 017309 118 G-KYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSAT 196 (373)
Q Consensus 118 G-~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~ 196 (373)
| |..+.+..+...+.........+...+..++.+++- + .+.-+++..+++...+..-.++...+...+
T Consensus 141 ~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~gi----------~-~~~~iii~~~i~~~Yt~~GGm~av~~td~i 209 (549)
T TIGR02711 141 KQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFGL----------N-YHVAVVLVGILMVMYVLFGGMLATTWVQII 209 (549)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----------C-HHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 7 456776666666555555666666666666665431 1 233445555666666777788888888776
Q ss_pred HHHHHH
Q 017309 197 GVVATI 202 (373)
Q Consensus 197 ~~~~~~ 202 (373)
-.+.++
T Consensus 210 Q~~im~ 215 (549)
T TIGR02711 210 KAVLLL 215 (549)
T ss_pred HHHHHH
Confidence 654443
No 71
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=97.65 E-value=0.0028 Score=61.41 Aligned_cols=288 Identities=13% Similarity=0.074 Sum_probs=138.8
Q ss_pred CCCHHHHHHHHHHHHHhHhhhHHHHHHHh--hcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcCcch
Q 017309 45 GCSFTQTIFNGINVMAGVGLLSTPYTVKE--AGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYG 121 (373)
Q Consensus 45 ~~s~~~~~~~l~~~~iG~Gil~lP~~~~~--~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~ 121 (373)
+.++++.+..-.+..+....+.+-..... .++. +++..++..++...-..+...... +.+ .++..++|..||.++
T Consensus 8 ~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~-r~G-l~~~v~sR~~FG~~G 85 (440)
T PF02133_consen 8 TWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIGP-RTG-LPTMVLSRASFGYRG 85 (440)
T ss_dssp -B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHH-CC----HHHHTTTTS-TTT
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhccccc-ccC-CCchhcchhccCcch
Confidence 44566666666666666555544443322 3344 555555555555444444444332 333 356678899999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCC--CC-----cccCchhHHHHHHHHHHHhhhcccCCchhhHHH
Q 017309 122 RLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDW--PG-----FQLDSTHLFGILTALIVLPTIWLRDLRVISYLS 194 (373)
Q Consensus 122 ~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~--~~-----~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s 194 (373)
..+..+...+...|-........++.+..+.+.....+ .+ ... ......++..++..+ ......+.++++.
T Consensus 86 s~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~-~~~~g~~~l~~~~ 163 (440)
T PF02133_consen 86 SKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLWIGNAIIGIAL-PLWVCFFIFWLIQTL-FAIYGMKALRRLA 163 (440)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH------------HHHHHHHHHHHH-HHCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhhhhhcchh-hHHHHHHHHHHHHHH-HHhcCHHHHHhHH
Confidence 99999998888888888888889999988776542200 00 000 111112222223332 2333566666666
Q ss_pred HHHHHHHHHHHHhhheec-cccCcc--cCCCCccccccchhhhhhhHhhhcc-cceehhhHhhhccCchhhHHHHHHHHH
Q 017309 195 ATGVVATILIVLCVLFLG-TIEGIG--FHPTGQVVKWSGMPFAIGIYGFCYS-GHSVFPNIYQSMADKTKFTKALITCFA 270 (373)
Q Consensus 195 ~~~~~~~~~~~~~i~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~faf~-~~~~~~~i~~~m~~p~~~~~~i~~s~~ 270 (373)
...........+...+.. ...+.+ .+.+........+..++....-.+. ...+.+...+.+|++++-.+....+..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~DysRy~~~~~~~~~~~~~~~~ 243 (440)
T PF02133_consen 164 VIAAPILLVVFIGMLIWALSKAGGGPLLSAPASPSPSGSFLAAIALVIGSWISWAPNASDYSRYAKSDTSAWWGFWLGFP 243 (440)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHCT-HHHCCS--S----S-HHHHHHHHHCCCHHHHCCCHHHHTTC--HHHHHHHHHHHHH
T ss_pred hhhhHHHHhhhhheeEEEeecCCcchhhhCcccchhHHHHHHHHHHHHhhhhhhhhccccHHhhCCCCCCcEEEEeehhh
Confidence 555444333322222221 111111 1111111111134444433332222 334566888999988877777778877
Q ss_pred HHHHHHHHHHHHHHHH----hcCCchhh--hhhcCCCchHHHHHHHHHHH-HHHHHhhhhhhchhHHHHHHHcC
Q 017309 271 LCVLIYGGVAVMGFLM----FGQGTLSQ--ITLNMPPHAFASKVAVWTTV-INPFTKYALLMNPLARSIEELLP 337 (373)
Q Consensus 271 ~~~~~Y~~~g~~gy~~----fg~~~~~~--il~n~~~~~~~~~i~~~~~~-i~~~~s~pl~~~~~~~~~~~~~~ 337 (373)
........+++++... .+++..+. ++.++.+..... +..+... .....+--.+.++....+.+.++
T Consensus 244 ~~~~~~~~~g~lg~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~l~i~~~~~~~~~~~n~ys~~~~l~~~~~ 316 (440)
T PF02133_consen 244 GGFIPFVLVGILGAAAGGIADGEPIWDPLQILGAFLPPFGGF-FPALLILFASIWTNNAANLYSAGLALQNIFP 316 (440)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHTS--HHHHHH-HHH-HHHHHHHTTHHHHHTHHHHHHHHCCST
T ss_pred hHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHHhcchhHHH-HHHHHHHHHHHHHhhhhhHhhHHHHHHHccc
Confidence 7777777777765543 33322222 233333221111 1212222 23334445666777777777776
No 72
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=97.64 E-value=0.078 Score=52.34 Aligned_cols=155 Identities=13% Similarity=0.080 Sum_probs=92.8
Q ss_pred CcccCCCCCCHHHHHHHHHHHHHhHhh-hHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHH---H-hhhhCCCCCChHHH
Q 017309 38 GELPIAHGCSFTQTIFNGINVMAGVGL-LSTPYTVKEAGWASLVVLLLFAVVCCYTASLMR---Y-CFESKEGITTYPDI 112 (373)
Q Consensus 38 ~~~~~~~~~s~~~~~~~l~~~~iG~Gi-l~lP~~~~~~G~~g~i~~~~~~~~~~~~~~~l~---~-~~~~~~~~~~y~~l 112 (373)
|---..|+.+++...+.+..+.+++.. ++.|....+.|+.+....+...+.......++. + -..++.+..|..|.
T Consensus 34 dy~lagr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~ 113 (502)
T PRK15419 34 DYILGGRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISESWIAIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDY 113 (502)
T ss_pred HheeeCCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHH
Confidence 444557889999999999999998874 679998889997632211111111111222221 1 11235677899999
Q ss_pred HHHhcCcch---hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCch
Q 017309 113 GEAAFGKYG---RLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRV 189 (373)
Q Consensus 113 ~~~~~G~~~---~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~ 189 (373)
-++=||++. +.+..+...+.....+..-+...+..+..+.+ .+ .....++..++.+..+..-.++.
T Consensus 114 l~~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~g----------i~-~~~~iii~~~iv~iYt~~GGl~a 182 (502)
T PRK15419 114 FTGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFG----------MS-YETALWAGAAATILYTFIGGFLA 182 (502)
T ss_pred HHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CC-HHHHHHHHHHHHHHHHHhhhHHH
Confidence 999999653 33344444444444444444445556555542 11 33445555666666777778888
Q ss_pred hhHHHHHHHHHHHH
Q 017309 190 ISYLSATGVVATIL 203 (373)
Q Consensus 190 l~~~s~~~~~~~~~ 203 (373)
..+...+-.+.++.
T Consensus 183 V~~TD~iQ~~imi~ 196 (502)
T PRK15419 183 VSWTDTVQASLMIF 196 (502)
T ss_pred HHHHHHHHHHHHHH
Confidence 88887776554443
No 73
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=97.57 E-value=0.11 Score=51.98 Aligned_cols=154 Identities=14% Similarity=0.088 Sum_probs=97.3
Q ss_pred cCcccCCCCCCHHHHHHHHHHHHHhHh-hhHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHH
Q 017309 37 TGELPIAHGCSFTQTIFNGINVMAGVG-LLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEA 115 (373)
Q Consensus 37 ~~~~~~~~~~s~~~~~~~l~~~~iG~G-il~lP~~~~~~G~~g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~ 115 (373)
+|---..|+.+++...+.+..+.++++ .++.|....+.|+.+.....-..........++.+-.+ +.+..|..|.-++
T Consensus 25 ~dy~laGr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~~g~~~~~~~~~~~~~p~~r-r~~~~T~~e~l~~ 103 (552)
T TIGR03648 25 SEFYVAGRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDGLAYLMGWTGGYVLLALLLAPYLR-KFGKYTVPDFIGD 103 (552)
T ss_pred HHHeeeCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCccHHHHHHH
Confidence 344556788999999999999988775 67899888888875332222111111223344555544 5677899999898
Q ss_pred hcCcc-hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhhHHH
Q 017309 116 AFGKY-GRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLS 194 (373)
Q Consensus 116 ~~G~~-~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s 194 (373)
-||++ .+.+..+...+.........+...+..++.+.+- + .+..+++..++++-.+..-.++...+..
T Consensus 104 Rf~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~gi----------~-~~~~iii~~~i~~iYt~~GG~~aV~~TD 172 (552)
T TIGR03648 104 RYYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLEV----------D-FETGVFIGMAIVFFYAVLGGMKGVTWTQ 172 (552)
T ss_pred HhCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----------C-HHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 88855 5666666666666655666666666666665431 1 2333445555556566666788887777
Q ss_pred HHHHHHHH
Q 017309 195 ATGVVATI 202 (373)
Q Consensus 195 ~~~~~~~~ 202 (373)
.+-.+.++
T Consensus 173 ~iQ~iim~ 180 (552)
T TIGR03648 173 VAQYIVLI 180 (552)
T ss_pred HHHHHHHH
Confidence 66644433
No 74
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=97.48 E-value=0.13 Score=50.67 Aligned_cols=155 Identities=14% Similarity=0.110 Sum_probs=90.1
Q ss_pred CcccCCCCCCHHHHHHHHHHHHHhHh-hhHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhh---h-CCCCCChHHH
Q 017309 38 GELPIAHGCSFTQTIFNGINVMAGVG-LLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFE---S-KEGITTYPDI 112 (373)
Q Consensus 38 ~~~~~~~~~s~~~~~~~l~~~~iG~G-il~lP~~~~~~G~~g~i~~~~~~~~~~~~~~~l~~~~~---~-~~~~~~y~~l 112 (373)
|-.-..|+.+++...+.+..+.+++. +++.|....+.|+.+........+........+.+-.+ + +.+..|..|+
T Consensus 30 df~lagr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~ 109 (487)
T TIGR02121 30 DYVLGGRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSELWIAIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDF 109 (487)
T ss_pred HHeeeCCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHH
Confidence 33445678999999999988888875 56789888888876322222111222222333333222 1 5677899999
Q ss_pred HHHhcCcchhh---HHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCch
Q 017309 113 GEAAFGKYGRL---LISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRV 189 (373)
Q Consensus 113 ~~~~~G~~~~~---~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~ 189 (373)
-++=||++.+. +..+...+........-+...+..++.+.+- + .....++..++..-.+..-.++.
T Consensus 110 l~~Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~gi----------~-~~~~iii~~~i~~~Yt~~GGl~a 178 (487)
T TIGR02121 110 FENRFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFGL----------D-YKTGLLIGALIIVIYTFFGGFLA 178 (487)
T ss_pred HHHHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc----------c-HHHHHHHHHHHHHHHHHhhhHHH
Confidence 99999965433 3333333333333444444555555555421 1 23344555556666667777888
Q ss_pred hhHHHHHHHHHHHH
Q 017309 190 ISYLSATGVVATIL 203 (373)
Q Consensus 190 l~~~s~~~~~~~~~ 203 (373)
..+...+-.+.++.
T Consensus 179 v~~TD~iQ~~i~~~ 192 (487)
T TIGR02121 179 VSWTDFVQGLLMFF 192 (487)
T ss_pred HHHHHHHHHHHHHH
Confidence 88877766555443
No 75
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=97.45 E-value=0.0076 Score=55.48 Aligned_cols=105 Identities=12% Similarity=0.170 Sum_probs=81.0
Q ss_pred CCHHHHHHHHHHHHHhHhhhHHHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcCcchhhH
Q 017309 46 CSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLL 124 (373)
Q Consensus 46 ~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~ 124 (373)
.+.+..+.+=+.++-|+|-+.=|-.-.+-||+ +.+.+++.+++.---.-+..-...-+++-+|..|++++..||+++.+
T Consensus 52 ~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~SvR~~G~Si~~i~~~~lG~~~~~l 131 (376)
T PF02554_consen 52 TNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMASVRHKGKSIGEIAGKYLGKRAKKL 131 (376)
T ss_pred CchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHHHHHHHH
Confidence 45578888899999999998888888999999 87776654444433333333333346666899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhh
Q 017309 125 ISVLLYTELYSYCVEFIILEGDNLTS 150 (373)
Q Consensus 125 ~~i~~~~~~~g~~~~y~i~~~~~l~~ 150 (373)
..+..++.......++....++.+.+
T Consensus 132 f~~f~~~~lilV~avF~~v~a~~~~~ 157 (376)
T PF02554_consen 132 FLIFIFFLLILVIAVFADVVANTFVN 157 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99988888888888888777777654
No 76
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=97.34 E-value=0.16 Score=48.79 Aligned_cols=228 Identities=12% Similarity=0.109 Sum_probs=117.5
Q ss_pred CChHHHHHHhcCcchhh---HHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCC---------CCCcccCchhHHHHHH
Q 017309 107 TTYPDIGEAAFGKYGRL---LISVLLYTELYSYCVEFIILEGDNLTSLFPGASLD---------WPGFQLDSTHLFGILT 174 (373)
Q Consensus 107 ~~y~~l~~~~~G~~~~~---~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~---------~~~~~~~~~~~~~~i~ 174 (373)
..|..+.+..||-++.. +......+.-+|...- ..+..++-++...... ..+... ......++.
T Consensus 103 IpFpv~~RaSFGi~Ga~~p~l~R~i~A~~WyGvqty---~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt-~~~i~F~if 178 (497)
T COG1953 103 IPFPVLSRASFGIYGANFPALIRAIVAIVWYGVQTY---AGGLAVNLLLGSIFPSLLIPNTLSPLLGLTT-LELICFFIF 178 (497)
T ss_pred CCchHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHhccccccCCccccccCCcH-HHHHHHHHH
Confidence 58999999999877554 3445555555553322 2222222222221111 111111 011222233
Q ss_pred HHHHHhhhcccCCchhhHHHHHHHHHHHHHHHhhheeccc-cCc---ccCCC---Cccccc-cchhhhhhhHhhhc-ccc
Q 017309 175 ALIVLPTIWLRDLRVISYLSATGVVATILIVLCVLFLGTI-EGI---GFHPT---GQVVKW-SGMPFAIGIYGFCY-SGH 245 (373)
Q Consensus 175 ~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~i~~~~~~-~~~---~~~~~---~~~~~~-~~~~~~~~~~~faf-~~~ 245 (373)
-++.+ +...+.++.++++-..+-.++.+..+...+.... .+. ..+.+ ....+. ..+........-.| ...
T Consensus 179 W~l~~-l~~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~~~p~~~~~~~~~~w~~~~~~~~~v~~~Atl~ 257 (497)
T COG1953 179 WVLQL-LVLFKGMESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSILGELPAGTVSGSNSSWAFLAGIAAWVGFWATLA 257 (497)
T ss_pred HHHHH-HHHhcCHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHh
Confidence 33333 3455689999999888877766666555443322 111 11111 111111 12222222222222 245
Q ss_pred eehhhHhhhccCchhhHHHHHHHHHHHHHHHHHH----HHHHHHHhcCCc--hhhhhhcCCCchHHHHHHHHHH-HHHHH
Q 017309 246 SVFPNIYQSMADKTKFTKALITCFALCVLIYGGV----AVMGFLMFGQGT--LSQITLNMPPHAFASKVAVWTT-VINPF 318 (373)
Q Consensus 246 ~~~~~i~~~m~~p~~~~~~i~~s~~~~~~~Y~~~----g~~gy~~fg~~~--~~~il~n~~~~~~~~~i~~~~~-~i~~~ 318 (373)
.|.|...+.-|+|++-..-=.++..+...+..++ +..++..||+.. +.++..+++++.....++.+.+ +-.+.
T Consensus 258 lN~~DFsRfa~s~~~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~~~~~~~fl~~l~~~iati~ 337 (497)
T COG1953 258 LNIPDFTRFAKSQKAQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFLSGFYAAFLAGLTFAVATIS 337 (497)
T ss_pred cCCchhhcccCChhhhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence 5888889999988754433334444444444444 445688899874 4568888887655541233333 33455
Q ss_pred HhhhhhhchhHHHHHHHcCCC
Q 017309 319 TKYALLMNPLARSIEELLPAG 339 (373)
Q Consensus 319 ~s~pl~~~~~~~~~~~~~~~~ 339 (373)
+...-+..+...-+..++|+.
T Consensus 338 ~Ni~aN~vsp~~D~s~l~Pk~ 358 (497)
T COG1953 338 TNIAANIVSPGYDLSALFPKY 358 (497)
T ss_pred hhHHhccCChHHHHHHhcccc
Confidence 666667777777777888775
No 77
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.27 E-value=0.0058 Score=59.96 Aligned_cols=269 Identities=14% Similarity=0.092 Sum_probs=138.0
Q ss_pred hHHHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhh--CCCCCChHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHH
Q 017309 65 LSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFES--KEGITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFI 141 (373)
Q Consensus 65 l~lP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~--~~~~~~y~~l~~~~~G~~~~~~~~i~~~~~~~g~~~~y~ 141 (373)
|=+++.+.|+|.+ .+..+++...+..++..-+...+.+ ..+-.-|.-+.+ ..|+-.+--+..+.++.+...|..++
T Consensus 88 LR~gfIvG~aGll~Tll~lliaY~I~llTvlSicAIsTNGaV~GGGaYymISR-sLGpEfGGSIGllFf~anV~~~am~i 166 (945)
T KOG1288|consen 88 LRFGFIVGQAGLLKTLLMLLIAYAILLLTVLSICAISTNGAVRGGGAYYMISR-SLGPEFGGSIGLLFFVANVFNCAMNI 166 (945)
T ss_pred HHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceecCceEEEEEc-ccCcccCCeeeehhhHHHHhcchhhh
Confidence 3478888999988 7777766666666555444433321 122334544433 34554444445556666667778888
Q ss_pred HHhhhhhhhhcCCCC-CCCCCcccCchhHHHHHHHHHHH----hhhcccCCchhhHHHHHHHHHHHHHHHhhhe----ec
Q 017309 142 ILEGDNLTSLFPGAS-LDWPGFQLDSTHLFGILTALIVL----PTIWLRDLRVISYLSATGVVATILIVLCVLF----LG 212 (373)
Q Consensus 142 i~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~i~~~i~~----pl~~~~~l~~l~~~s~~~~~~~~~~~~~i~~----~~ 212 (373)
.-+.|-+.+.+..-. ....+.+++...||-.+...++. .+|+. .-.-+++.+.+-+..+..-...+.+ .+
T Consensus 167 sG~vE~il~nfG~~a~g~sg~~~lP~g~ww~fly~t~vl~l~~~vc~l-GsalfAkas~i~f~~is~s~~si~iS~ifvg 245 (945)
T KOG1288|consen 167 SGFVEPILDNFGKEAQGASGSQFLPDGYWWRFLYTTLVLALCLIVCLL-GSALFAKASNILFVVISVSLFSIPISFIFVG 245 (945)
T ss_pred hhhhHHHHHhcCccccCCcccccCCCCcchhhHHHHHHHHHHHHHHHh-hHHHHHhhhhhhhhHHHHHHhhhhheeEEec
Confidence 888777766655221 11111223333334333222222 23333 2233344443322221111111111 11
Q ss_pred ccc-Ccc--------------------cC-----------CCCccccccchhhhhhhHhhhcccceehhhHhhhccCch-
Q 017309 213 TIE-GIG--------------------FH-----------PTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT- 259 (373)
Q Consensus 213 ~~~-~~~--------------------~~-----------~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~- 259 (373)
..+ +.+ ++ .........++...+|+++-+-.|.-.=-.+..|+|+|+
T Consensus 246 p~~~~ip~~~~p~~sn~t~~~~yTG~~~sTl~dNL~~~yt~dyt~~~~~~F~~~FgV~F~g~tGimAGAnMSgELk~PSk 325 (945)
T KOG1288|consen 246 PFKDPIPVPGDPILSNTTLFVHYTGLSWSTLMDNLGSHYTEDYTGGGYEDFASTFGVFFPGTTGIMAGANMSGELKAPSK 325 (945)
T ss_pred cccCCCCCCCCccccCcceeeeecCccHHHHhhhhhhhhcccccCCCceehhhhheeeeccchhhhcCCCcCccccCccc
Confidence 111 100 00 000011224566788888777777777778889999997
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hh--hhhcCCCchHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHc
Q 017309 260 KFTKALITCFALCVLIYGGVAVMGFLMFGQGTL-SQ--ITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELL 336 (373)
Q Consensus 260 ~~~~~i~~s~~~~~~~Y~~~g~~gy~~fg~~~~-~~--il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~ 336 (373)
.+||-...++...+++|+++.++.-.+-..... .+ +.....-.++... +.+.-..+.|-...+....+.+|.+-
T Consensus 326 SIP~GTl~ava~Tf~~Yvl~~flm~~t~~r~~Lq~dy~v~~~isl~p~fi~---iGi~sttlfss~s~liGasrvL~ala 402 (945)
T KOG1288|consen 326 SIPKGTLSAVAFTFFVYVLVIFLMGCTVPRTLLQNDYDVMMHISLHPPFIL---IGILSTTLFSSMSGLIGASRVLEALA 402 (945)
T ss_pred cCCccchHHHHHHHHHHHHHHHHhccCcchHHhhhchhheeeccccchHHH---HHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 589999999999999999987754433222111 11 1121222233322 22333444555556666667777654
Q ss_pred CC
Q 017309 337 PA 338 (373)
Q Consensus 337 ~~ 338 (373)
.+
T Consensus 403 kD 404 (945)
T KOG1288|consen 403 KD 404 (945)
T ss_pred hc
Confidence 43
No 78
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=97.11 E-value=0.0021 Score=62.03 Aligned_cols=224 Identities=15% Similarity=0.158 Sum_probs=132.3
Q ss_pred CCCHHHHHHHHH-HHHHhHhh-hHHHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCC-CCCChHHHHHHhcCcc
Q 017309 45 GCSFTQTIFNGI-NVMAGVGL-LSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKE-GITTYPDIGEAAFGKY 120 (373)
Q Consensus 45 ~~s~~~~~~~l~-~~~iG~Gi-l~lP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~-~~~~y~~l~~~~~G~~ 120 (373)
+-||++.++.-+ -.+.|.=+ |=++|...|+|.. |++++.....++..+..-.....++.. +...-.-+..+..|+.
T Consensus 29 ~fg~~~gv~~~cmlni~gv~lflrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg~yflis~slg~e 108 (643)
T KOG2083|consen 29 LFGWWDGVFVRCMLNIFGVILFLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGGVYFLISRSLGPE 108 (643)
T ss_pred EEeeeehhhhhhhHHHHHHHHhhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCcEEEEEEeccccc
Confidence 467777765432 22444433 3489999999998 988887777666665544433322111 1111122344556777
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhhHHHHHHHHH
Q 017309 121 GRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVA 200 (373)
Q Consensus 121 ~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~ 200 (373)
.+--..+...+.+...+..|.+-++|.+.+++...... ..+. ...+..++++-+ ++-...|.+..-++.
T Consensus 109 fggsigiIy~f~~aVa~am~~vgfaEsv~~l~~~~s~~----~i~g---i~~vt~~ill~i----~~ag~~w~~k~q~~l 177 (643)
T KOG2083|consen 109 FGGSIGIIYAFANAVATAMYVVGFAESVAHLFETESKE----MIDG---IGSVTVLILLAI----NVAGVEWEAKLQIVL 177 (643)
T ss_pred ccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhccHH----Hhcc---hhHHHHHHHHHh----hhccchhHHHHHHHH
Confidence 77777788888888899999999999999998765321 1111 222222222222 333334444433333
Q ss_pred HHHHHHhhh--eecc-ccC-------cccC------CCCccccc-cchhhhhhhHhhhcccceehhhHhhhccCch-hhH
Q 017309 201 TILIVLCVL--FLGT-IEG-------IGFH------PTGQVVKW-SGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFT 262 (373)
Q Consensus 201 ~~~~~~~i~--~~~~-~~~-------~~~~------~~~~~~~~-~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~-~~~ 262 (373)
.++..+.+. ..+. ..+ .++. +..+.++. ..++.-+++.+=+..|.-.=..+.+.+|+|+ ..|
T Consensus 178 l~il~iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~~~tfF~vf~vfFpaatgilaG~nisGdL~~Pq~~IP 257 (643)
T KOG2083|consen 178 LLILLIAIADFLVGSFFSPNEFSSGFFGYRADIFVENLNPDIDPGYTFFSVFAVFFPAATGILAGANISGDLKDPQKAIP 257 (643)
T ss_pred HHHHHHHHHHhhhhhccChhhhcccccccchhhcccCCCCCcCCCCceEeeeeeecchhhhhhccccccCCCCCchhhcc
Confidence 232222221 1111 100 0111 11111111 2577888888888888888888999999997 689
Q ss_pred HHHHHHHHHHHHHHHHH
Q 017309 263 KALITCFALCVLIYGGV 279 (373)
Q Consensus 263 ~~i~~s~~~~~~~Y~~~ 279 (373)
+-...+......+|..+
T Consensus 258 ~GaL~Ai~vst~~yl~~ 274 (643)
T KOG2083|consen 258 LGALLAIGVSTLLYLIF 274 (643)
T ss_pred cchhhhhhhhhhhhhhh
Confidence 99999999999999655
No 79
>PRK10484 putative transporter; Provisional
Probab=97.06 E-value=0.38 Score=47.74 Aligned_cols=162 Identities=15% Similarity=0.117 Sum_probs=88.2
Q ss_pred cCcccCCCCCCHHHHHHHHHHHHHhHh-hhHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHH
Q 017309 37 TGELPIAHGCSFTQTIFNGINVMAGVG-LLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEA 115 (373)
Q Consensus 37 ~~~~~~~~~~s~~~~~~~l~~~~iG~G-il~lP~~~~~~G~~g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~ 115 (373)
+|---.+|+.+++-..+.+..+.++++ .++.|....+.|+.........+.........+..-.+ +.+..|..|+-++
T Consensus 31 ~dyflagR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~p~~~-r~~~~T~~e~l~~ 109 (523)
T PRK10484 31 DGYFLAGRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVMAWEVTAAIALIILALIFLPRYL-KSGITTIPDFLEE 109 (523)
T ss_pred hhheecCCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCccHHHHHHH
Confidence 344455788999999999999988886 56799888888865321111111111122333333323 5677899999999
Q ss_pred hcCcchhhHHHHHHHHHHHHHHHH-HHHHhhhhhhhhcCCCCCCCCCcccCchhHH---HHHHHHHHHhhhcccCCchhh
Q 017309 116 AFGKYGRLLISVLLYTELYSYCVE-FIILEGDNLTSLFPGASLDWPGFQLDSTHLF---GILTALIVLPTIWLRDLRVIS 191 (373)
Q Consensus 116 ~~G~~~~~~~~i~~~~~~~g~~~~-y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~i~~~i~~pl~~~~~l~~l~ 191 (373)
-||++.+.+......+........ .+...+..++.++.... ..+ .+..... .++..++....+..-.++...
T Consensus 110 Ryg~~~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~~--~~g--i~~~~~~~~~~~~~~~i~~~Yt~~GGl~aV~ 185 (523)
T PRK10484 110 RYDKTTRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHVSE--LLG--ISYGAAIWLLVWLIGIIGAIYAVFGGLKAVA 185 (523)
T ss_pred hcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh--hcC--CcHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 999988777666544433332222 22222333333221100 011 1111111 122234445556666788888
Q ss_pred HHHHHHHHHHHH
Q 017309 192 YLSATGVVATIL 203 (373)
Q Consensus 192 ~~s~~~~~~~~~ 203 (373)
+...+-.+.++.
T Consensus 186 ~TD~iQ~vim~i 197 (523)
T PRK10484 186 VSDTINGIGLLI 197 (523)
T ss_pred HHHHHHHHHHHH
Confidence 877766554443
No 80
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=97.00 E-value=0.22 Score=47.28 Aligned_cols=287 Identities=14% Similarity=0.176 Sum_probs=141.7
Q ss_pred CCHHHHHHHHHHHHHhHh-hhHHHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhC---CCCCChHHHHHHhcCcc
Q 017309 46 CSFTQTIFNGINVMAGVG-LLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESK---EGITTYPDIGEAAFGKY 120 (373)
Q Consensus 46 ~s~~~~~~~l~~~~iG~G-il~lP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~---~~~~~y~~l~~~~~G~~ 120 (373)
.|...-.....++.+|-| +--.||...+.|.. -++..++..++.-+...+.-....|+ +...+|+++.. +|+
T Consensus 9 ~SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli~~l~~GiPlli~Ef~iGr~~~~~~~~a~~~l~~---~~~ 85 (439)
T COG0733 9 SSRLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFLLLVGIPLLLAEFAIGRRGRKNAVGAFRKLAP---KKK 85 (439)
T ss_pred hhHHHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHHHHHHHhHHHHHHHHHhhhhcCCChhHHHHHhcc---Ccc
Confidence 455666788889999998 56799999888866 44444444343333333333333333 33456665554 444
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCC----------CcccCchh--HHHHHHHHHHHhhhcccCCc
Q 017309 121 GRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWP----------GFQLDSTH--LFGILTALIVLPTIWLRDLR 188 (373)
Q Consensus 121 ~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~----------~~~~~~~~--~~~~i~~~i~~pl~~~~~l~ 188 (373)
++++- .......+..+.-|.++.|=.+..+......... .....+.. ....+...++.-+...|.++
T Consensus 86 ~~~~G-~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~iv~~GV~ 164 (439)
T COG0733 86 WEWIG-WFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALIVSRGVK 164 (439)
T ss_pred chhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhHH
Confidence 44332 2233333344555555555544443322211100 00011000 11111111122222334433
Q ss_pred h-hhHHHHHHHHHHHHHHHhhheeccccC-----cc--cCC-CCccccccchhhhhhhHhhhcc-cceehhhHhhhccCc
Q 017309 189 V-ISYLSATGVVATILIVLCVLFLGTIEG-----IG--FHP-TGQVVKWSGMPFAIGIYGFCYS-GHSVFPNIYQSMADK 258 (373)
Q Consensus 189 ~-l~~~s~~~~~~~~~~~~~i~~~~~~~~-----~~--~~~-~~~~~~~~~~~~~~~~~~faf~-~~~~~~~i~~~m~~p 258 (373)
+ .-+.|.+-....++.++.++.+....+ .+ +.+ .....|++-+..++|..+|+-+ |...+.+-...++|+
T Consensus 165 ~GIEk~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~mitYsSYL~k~ 244 (439)
T COG0733 165 KGIEKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLTDPKVWLAALGQAFFSLSLGFGIMITYSSYLSKK 244 (439)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 3 555555554554544444444433221 11 111 1223345667889999999988 555666666677788
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH---HHhcCCch----------hhhhhcCCCchHHHHHHHHHHHHHHHHhhhhhh
Q 017309 259 TKFTKALITCFALCVLIYGGVAVMGF---LMFGQGTL----------SQITLNMPPHAFASKVAVWTTVINPFTKYALLM 325 (373)
Q Consensus 259 ~~~~~~i~~s~~~~~~~Y~~~g~~gy---~~fg~~~~----------~~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~ 325 (373)
++..+........-+.+=.+.|+..+ ..+|.+.+ +++.+.+|-+.....+--++..+..++|---.+
T Consensus 245 ~~l~~sa~~v~~~n~~~s~lAGl~Ifpa~f~~g~~~~~GpgL~Fi~LP~if~~mp~G~~~~~lFFl~l~fAalTS~iSml 324 (439)
T COG0733 245 SDLVSSALSIVLLNTLISLLAGLVIFPALFSFGADASQGPGLVFIVLPAVFNQMPLGTLFGILFFLLLLFAALTSAISML 324 (439)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeeehhHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877665555555555555544332 23343322 345555663444443334444555555555555
Q ss_pred chhHHHHHHHc
Q 017309 326 NPLARSIEELL 336 (373)
Q Consensus 326 ~~~~~~~~~~~ 336 (373)
-+....+.+.+
T Consensus 325 E~~va~l~~~~ 335 (439)
T COG0733 325 EVLVAALIDKF 335 (439)
T ss_pred HHHHHHHHHHh
Confidence 55555555544
No 81
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=96.84 E-value=0.39 Score=47.67 Aligned_cols=162 Identities=14% Similarity=0.149 Sum_probs=79.7
Q ss_pred HHhhhcccCCchhhHHHHHHHHHHHHHHHhhheeccc-----cCcc--cC-CCCccccccchhhhhhhHhhhcc-cceeh
Q 017309 178 VLPTIWLRDLRVISYLSATGVVATILIVLCVLFLGTI-----EGIG--FH-PTGQVVKWSGMPFAIGIYGFCYS-GHSVF 248 (373)
Q Consensus 178 ~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~i~~~~~~-----~~~~--~~-~~~~~~~~~~~~~~~~~~~faf~-~~~~~ 248 (373)
+.-+...|.++...++........++..+.+...... ++.. .. +.....+.+-+..+++..+|+.. |...+
T Consensus 190 iv~~~i~kGi~~~~kv~~~~~~~p~v~l~il~ir~ltl~ga~~Gl~~~~~pd~~~l~~~~vW~~A~~Q~ffsl~ig~G~~ 269 (523)
T PF00209_consen 190 IVFFGIWKGIESIGKVMYPTLLLPFVLLIILLIRSLTLPGASEGLKFLFTPDWSKLLDPKVWIAALGQVFFSLSIGFGIM 269 (523)
T ss_dssp HHTTTTTTTHHHHHHHHHHHHH---HHHHHHHHHHHT-EEHHHHHHHHHSB-TTGTTSHHHHHHHHHHHHHHTTTTSSHH
T ss_pred HHHHheEeccccccchhhhhhhhhhEEEEEEEEEEEcCCCCCCceEEEecCCcchhhHHHHHHHHHHHHhhccCCCcceE
Confidence 3335566888887777766543222222222222211 1111 01 11112232335679999999998 56677
Q ss_pred hhHhhhccCchhhHHHHHHHHHHHHHHHHH-----HHHHHHHHhc--CCc--------------hhhhhhcCCCchHHHH
Q 017309 249 PNIYQSMADKTKFTKALITCFALCVLIYGG-----VAVMGFLMFG--QGT--------------LSQITLNMPPHAFASK 307 (373)
Q Consensus 249 ~~i~~~m~~p~~~~~~i~~s~~~~~~~Y~~-----~g~~gy~~fg--~~~--------------~~~il~n~~~~~~~~~ 307 (373)
......+|+.++..|.........+...+. ++.+|+.+.. .+. -+.+..++|..+....
T Consensus 270 it~~Sy~~~~~n~~~~a~~v~~~~~~~sllag~~if~~~g~~a~~~~~~i~~v~~~g~~L~Fi~~P~~~~~~p~~~~~~~ 349 (523)
T PF00209_consen 270 ITYGSYNKFKNNIFRDALIVAFINTLVSLLAGLVIFSVLGFLANELGVPISDVPESGPGLAFIVLPEAFSQMPGGRFWAI 349 (523)
T ss_dssp HHHHTTS-TTS-SHHHHHHHHHHHHHHHHTTGTHHHHHHHHHHHHHHHHHHH--H-CHHHHHTHHHHHHTTSTTHHHHHH
T ss_pred EEEcCcCCCCccccccceEEEcCchhhhHhHHHHHHhHHhhcccCCCCChhHhhCcCCCchHHHHHHHHHcCCCCcChHH
Confidence 777777777777666444333333333322 2334443321 110 1224445565555555
Q ss_pred HHHHHHHHHHHHhhhhhhchhHHHHHHHcCCC
Q 017309 308 VAVWTTVINPFTKYALLMNPLARSIEELLPAG 339 (373)
Q Consensus 308 i~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~ 339 (373)
+.-.++.+..+.|.-..+-+....+++.++..
T Consensus 350 lFFl~l~~agl~S~i~~~E~iv~~l~d~~~~~ 381 (523)
T PF00209_consen 350 LFFLMLFLAGLTSQISMLEVIVSALMDEFPIS 381 (523)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTST--
T ss_pred HHHHHHHHHHhhhcCCceeceeEeeeecCccc
Confidence 45455555555666666667777777766543
No 82
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=96.62 E-value=0.11 Score=50.30 Aligned_cols=105 Identities=15% Similarity=0.206 Sum_probs=78.8
Q ss_pred CCHHHHHHHHHHHHHhHhhhHHHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcCcchhhH
Q 017309 46 CSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLL 124 (373)
Q Consensus 46 ~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~ 124 (373)
.+.+..+-+=+.++-|+|-+-=|---+|.||. |.+.+++.+++.---.-.+.-....+++-.|.+|++++-.|+..+.+
T Consensus 52 tnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR~~G~Si~~ia~~~lG~~a~~~ 131 (575)
T COG1966 52 TNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSVRHGGKSIGEIAGKYLGRTAKVF 131 (575)
T ss_pred CCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeeeccCCccHHHHHHHHhhhhHHHH
Confidence 45577888888999999999999999999998 88877665555444444444433345666799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhh
Q 017309 125 ISVLLYTELYSYCVEFIILEGDNLTS 150 (373)
Q Consensus 125 ~~i~~~~~~~g~~~~y~i~~~~~l~~ 150 (373)
..+..++.......+......+.+.+
T Consensus 132 ~~~~~l~iliiv~Avfa~vv~~~l~~ 157 (575)
T COG1966 132 FLLLALILLILVGAVFAAVIAKLLAN 157 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88877777666666666666665544
No 83
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=96.41 E-value=0.92 Score=43.22 Aligned_cols=150 Identities=14% Similarity=0.162 Sum_probs=80.1
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhHh-hhHHHHHHHhhcHHHHHHHH---HHHHHHHHHHHHHHHhhhhCCCCCCh----HH
Q 017309 40 LPIAHGCSFTQTIFNGINVMAGVG-LLSTPYTVKEAGWASLVVLL---LFAVVCCYTASLMRYCFESKEGITTY----PD 111 (373)
Q Consensus 40 ~~~~~~~s~~~~~~~l~~~~iG~G-il~lP~~~~~~G~~g~i~~~---~~~~~~~~~~~~l~~~~~~~~~~~~y----~~ 111 (373)
++.+++.|.+|+++..+.+.+|+| |.+..-+..-.|...++.+- +.+..+-|+=..|....+++.++.+| ..
T Consensus 13 ~~~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GGPGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~y 92 (416)
T PF01235_consen 13 KEEEGGISPFQALCTALAGTVGTGNIAGVATAIAIGGPGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGPMY 92 (416)
T ss_pred CCCCCCcChHHHHHHHHHhccCcchHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecHHH
Confidence 344557999999999999999999 55688898888865444433 44455555555555444434333333 23
Q ss_pred HHHHhcCc-chhhHHHHHHHHHHHHH--HHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCc
Q 017309 112 IGEAAFGK-YGRLLISVLLYTELYSY--CVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLR 188 (373)
Q Consensus 112 l~~~~~G~-~~~~~~~i~~~~~~~g~--~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~ 188 (373)
..++.+|+ |.+.+..++ .+..++. .....-.+++.+++-+ ..+ + +..-+...++.-+.....++
T Consensus 93 yi~~gl~~k~la~~fai~-~~~~~~~~~~~~Q~nsi~~~~~~~f----------~i~-~-~~~gi~l~~l~~~vi~GGik 159 (416)
T PF01235_consen 93 YIEKGLGSKWLAILFAIF-LIIAFGIGFNMVQANSIADALSSAF----------GIP-P-WITGIILAILVALVIFGGIK 159 (416)
T ss_pred HHHHHhccchHHHHHHHH-HHHHHHhhhhHHHHHHHHHHHHhhc----------ccc-H-HHHHHHHHHHHHHHHHcchh
Confidence 45555554 444444444 2222222 2222222333333221 111 2 22233333333445566778
Q ss_pred hhhHHHHHHHHHHH
Q 017309 189 VISYLSATGVVATI 202 (373)
Q Consensus 189 ~l~~~s~~~~~~~~ 202 (373)
.+..++..-+..+.
T Consensus 160 rI~~v~~~lVP~Ma 173 (416)
T PF01235_consen 160 RIAKVSEKLVPFMA 173 (416)
T ss_pred HHHHHHHHHHHHHH
Confidence 87777765554443
No 84
>PRK15015 carbon starvation protein A; Provisional
Probab=96.32 E-value=0.064 Score=53.02 Aligned_cols=103 Identities=14% Similarity=0.169 Sum_probs=76.4
Q ss_pred CHHHHHHHHHHHHHhHhhhHHHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcCcchhhHH
Q 017309 47 SFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLLI 125 (373)
Q Consensus 47 s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~~ 125 (373)
+.+-.+-+=+.++-|+|-+-=|..-.+.||+ +++.+++..++.---.-+..-....+++-+|..|++++..||+++.+.
T Consensus 84 ~k~VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~R~~GrSig~ia~~~iG~~~~~lf 163 (701)
T PRK15015 84 DKKVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRRDGRSLGELVKEEMGPTAGVIA 163 (701)
T ss_pred CccchhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheeeeecCCCccHHHHHHHHhhHHHHHHH
Confidence 3367788889999999999999988899999 877766544333322222322223456667999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhh
Q 017309 126 SVLLYTELYSYCVEFIILEGDNLT 149 (373)
Q Consensus 126 ~i~~~~~~~g~~~~y~i~~~~~l~ 149 (373)
.+..++.......++..++.+.+.
T Consensus 164 li~i~~iliiviAvfalvvv~al~ 187 (701)
T PRK15015 164 LVACFMIMVIILAVLAMIVVKALT 187 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888887777777777777776664
No 85
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=95.62 E-value=0.16 Score=47.87 Aligned_cols=83 Identities=18% Similarity=0.245 Sum_probs=61.1
Q ss_pred CCCCChHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhc
Q 017309 104 EGITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIW 183 (373)
Q Consensus 104 ~~~~~y~~l~~~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~ 183 (373)
++..-..+++++.||++|+.+..+...+.|+.+++......+|+..++.+.. +...+.++..+..+-++.
T Consensus 252 ~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~k~----------~y~~~v~~~~l~s~~ia~ 321 (378)
T TIGR00796 252 NGAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVPKL----------SYKTWVIVFTLFSFIVAN 321 (378)
T ss_pred CcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----------CHHHHHHHHHHHHHHHHH
Confidence 3445567889999999999999999999999999999999999999986531 244455555555554444
Q ss_pred ccCCchhhHHHHHH
Q 017309 184 LRDLRVISYLSATG 197 (373)
Q Consensus 184 ~~~l~~l~~~s~~~ 197 (373)
. +++.+-.++..-
T Consensus 322 ~-Gl~~Ii~~~~Pv 334 (378)
T TIGR00796 322 L-GLTQIISISIPV 334 (378)
T ss_pred h-CHHHHHHHHHHH
Confidence 4 666665555443
No 86
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=95.61 E-value=2.3 Score=40.82 Aligned_cols=268 Identities=19% Similarity=0.225 Sum_probs=124.4
Q ss_pred CHHHHHHHHHHHHHhHhhhHHHHHH-Hhhc--HH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcCcchh
Q 017309 47 SFTQTIFNGINVMAGVGLLSTPYTV-KEAG--WA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGR 122 (373)
Q Consensus 47 s~~~~~~~l~~~~iG~Gil~lP~~~-~~~G--~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~ 122 (373)
.....-+.++....|+|=|-.|-.. +++| |. +.+-+++.++.--.-.. .+-.+.+. +++++++++ ||+.+
T Consensus 4 ~~l~ig~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgv----ia~~~~~~-~~~~l~~~v-~~~f~ 77 (427)
T PF05525_consen 4 DILIIGFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGV----IAVAKSGG-GIEDLASRV-GPKFA 77 (427)
T ss_pred hhhhHHHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHH----HHHhhcCC-CHHHHhccc-CcHHH
Confidence 3456678899999999999988877 4555 44 66666555543332221 11112222 788888877 45555
Q ss_pred hHHHHHHHHHH--HH-----HHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccC--CchhhHH
Q 017309 123 LLISVLLYTEL--YS-----YCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRD--LRVISYL 193 (373)
Q Consensus 123 ~~~~i~~~~~~--~g-----~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~--l~~l~~~ 193 (373)
.+......+.. +. ..++|-......+.. .... ....+.++.+.+.+-++.-++ ++.+.++
T Consensus 78 ~if~~~i~l~IGP~~aiPRtaa~sfe~~i~p~~~~----------~~~~-~~~ifs~iFF~i~~~l~~~p~kivd~iGk~ 146 (427)
T PF05525_consen 78 LIFTILIYLSIGPLFAIPRTAAVSFEMGIAPFFPE----------NSNI-SLLIFSIIFFAITYLLSLNPSKIVDRIGKF 146 (427)
T ss_pred HHHHHHHHHHHHhcccCcchhhhhHHHhhhccCCc----------cccc-chhhhhHHHHHHHHHHHhchhhHHHHHHHH
Confidence 44443332221 00 122222222222211 0011 133344555555555554433 3444433
Q ss_pred HHHHHHHHHHHHHhhheeccccCcccCC-CCccc---cc-c------chhhhhhhHhhhcccceehhhHh-hhccCchhh
Q 017309 194 SATGVVATILIVLCVLFLGTIEGIGFHP-TGQVV---KW-S------GMPFAIGIYGFCYSGHSVFPNIY-QSMADKTKF 261 (373)
Q Consensus 194 s~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~---~~-~------~~~~~~~~~~faf~~~~~~~~i~-~~m~~p~~~ 261 (373)
-. ...+...+.++..+...+.+... +.... .+ . +-+.+++.+.|+- ..+-.+. +..+|+++.
T Consensus 147 LT---P~LL~~l~ilii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMD~laal~Fg~---iIi~~i~~~g~~~~k~~ 220 (427)
T PF05525_consen 147 LT---PILLILLAILIIKGIFSPIGPPQAPSGAYASNPFFKGFLEGYQTMDALAALAFGI---IIINAIRQKGYKDKKEI 220 (427)
T ss_pred HH---HHHHHHHHHHHHHHHHcCCCCccccchhhhhhHHHHHHHHHHhhhhHHHHHHHHH---HHHHHHHHhCCCCHHHH
Confidence 33 33333333333333333222111 11111 01 1 1223344344332 2222222 224455544
Q ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHHhc---CCch-hhhhhcCCCc---hHHHHHHHHHHHHHHHHhhhhhhchhHH
Q 017309 262 TK----ALITCFALCVLIYGGVAVMGFLMFG---QGTL-SQITLNMPPH---AFASKVAVWTTVINPFTKYALLMNPLAR 330 (373)
Q Consensus 262 ~~----~i~~s~~~~~~~Y~~~g~~gy~~fg---~~~~-~~il~n~~~~---~~~~~i~~~~~~i~~~~s~pl~~~~~~~ 330 (373)
.| +-..+...-.++|...+.+|...-+ ++.+ +.++.+..+. +....+..+...+.++++-.-....+.|
T Consensus 221 ~~~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~ 300 (427)
T PF05525_consen 221 KKYTIKAGLIAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAE 300 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 3445555556677777777765443 2232 3344433221 2222333444555666666666677788
Q ss_pred HHHHHcC
Q 017309 331 SIEELLP 337 (373)
Q Consensus 331 ~~~~~~~ 337 (373)
.+++.++
T Consensus 301 yf~~~~~ 307 (427)
T PF05525_consen 301 YFSELFP 307 (427)
T ss_pred HHHHHhc
Confidence 8888887
No 87
>PHA02764 hypothetical protein; Provisional
Probab=95.54 E-value=0.83 Score=41.36 Aligned_cols=91 Identities=13% Similarity=-0.039 Sum_probs=61.4
Q ss_pred CCCCCHHHHHH-HHHHHHHhHhhhHHHHHHHhh--cHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcCc
Q 017309 43 AHGCSFTQTIF-NGINVMAGVGLLSTPYTVKEA--GWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGK 119 (373)
Q Consensus 43 ~~~~s~~~~~~-~l~~~~iG~Gil~lP~~~~~~--G~~g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~ 119 (373)
-|+.|.+++++ |+.....|.++ +.|+-++.. |...+..+++.++++........+...+.|+...-....++++||
T Consensus 11 VREvs~lDAF~~Nl~~m~~Gi~I-s~~~l~a~l~pG~nlLLAWLLGGLlALPgAL~YAELGSAmPrAGGdYVYISRAFGP 89 (399)
T PHA02764 11 IKSFNILDIFSINLLYMGILSGI-SYPLFVSSLLKNVNLLFAILIGAVFEIPLLLMYYKLTTKFPLNGGDYAYIRTAFSS 89 (399)
T ss_pred eeeccHHHHHHHHHHhhccchhH-HHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEhHHhhCc
Confidence 35688888887 66666666654 556644443 333555566677777777777777766666665555559999999
Q ss_pred chhhHHHHHHHHHHH
Q 017309 120 YGRLLISVLLYTELY 134 (373)
Q Consensus 120 ~~~~~~~i~~~~~~~ 134 (373)
+++++..+..+....
T Consensus 90 ~~GFLvG~a~WLtl~ 104 (399)
T PHA02764 90 KFYTIFGISLWLTYV 104 (399)
T ss_pred cHHHHHHHHHHHHHH
Confidence 999988876665544
No 88
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=95.40 E-value=0.14 Score=48.82 Aligned_cols=82 Identities=20% Similarity=0.350 Sum_probs=64.4
Q ss_pred CCCChHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcc
Q 017309 105 GITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWL 184 (373)
Q Consensus 105 ~~~~y~~l~~~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~ 184 (373)
+..-..+++++.+|+.|..+..+...+.|+-+++.....++|+.++..+.. +++.|+.+..++.+.++..
T Consensus 259 g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~ki----------sY~~~v~i~~i~S~~ian~ 328 (427)
T PF05525_consen 259 GAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFPKI----------SYKVWVIIFTIFSFIIANL 328 (427)
T ss_pred HHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------ChHHHHHHHHHHHHHHHHh
Confidence 334556788999999999999999999999999999999999999988732 2456666666776666666
Q ss_pred cCCchhhHHHHHH
Q 017309 185 RDLRVISYLSATG 197 (373)
Q Consensus 185 ~~l~~l~~~s~~~ 197 (373)
+++.+-.++.--
T Consensus 329 -Gl~~Ii~~s~Pi 340 (427)
T PF05525_consen 329 -GLDQIIKISVPI 340 (427)
T ss_pred -CHHHHHHHHHHH
Confidence 677766666543
No 89
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=95.24 E-value=2.9 Score=39.86 Aligned_cols=298 Identities=14% Similarity=0.121 Sum_probs=148.0
Q ss_pred cCCCCCCHHHHHHHHHHHHHhHhh-hHHHHHHHhhcHHHHHHH---HHHHHHHHHHHHHHHHhhhhCCCCCChH----HH
Q 017309 41 PIAHGCSFTQTIFNGINVMAGVGL-LSTPYTVKEAGWASLVVL---LLFAVVCCYTASLMRYCFESKEGITTYP----DI 112 (373)
Q Consensus 41 ~~~~~~s~~~~~~~l~~~~iG~Gi-l~lP~~~~~~G~~g~i~~---~~~~~~~~~~~~~l~~~~~~~~~~~~y~----~l 112 (373)
+.+++.|.+|+.+....+-+|+|= -...-+..-.|...+..+ -+.+..+-|.=..|....+++.++..|. ..
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GGPGAvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~yY 137 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIALGGPGAVFWMWIVALFGMATKFAESTLAQKYRVKDKDGEYRGGPAYY 137 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHhheeEeCCCCCCcCChHHH
Confidence 445679999999999999999995 458888888886533332 3555666665555655544344344442 23
Q ss_pred HHHhcC-cchhhHHHHHHHHHHHH--HHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCch
Q 017309 113 GEAAFG-KYGRLLISVLLYTELYS--YCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRV 189 (373)
Q Consensus 113 ~~~~~G-~~~~~~~~i~~~~~~~g--~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~ 189 (373)
.++-+| ||-+.+..+.+. ..+| .+....-.+++.+++-... ..+..-+...++.-+.....++.
T Consensus 138 i~kGl~~r~l~v~FA~~li-~afg~i~n~vQ~NsIa~a~~~af~~------------~~~~~gi~la~l~~~VI~GGi~r 204 (452)
T COG1115 138 IEKGLGMRWLAVLFAFALI-AAFGFIGNGVQSNSIASALANAFGI------------PPLVTGIVLALLVALVIFGGIKR 204 (452)
T ss_pred HHhhcCCcHHHHHHHHHHH-HHHHhhcchhhHHHHHHHHHHhcCC------------cHHHHHHHHHHHHHHHHHcchHH
Confidence 344444 555555543333 3333 4455555555555554321 12233333344444456678888
Q ss_pred hhHHHHHHHHHHHHHHHh--hheeccc-cCcc----------cCCCCcccccc------chhhhhhhHhhhcc-cceehh
Q 017309 190 ISYLSATGVVATILIVLC--VLFLGTI-EGIG----------FHPTGQVVKWS------GMPFAIGIYGFCYS-GHSVFP 249 (373)
Q Consensus 190 l~~~s~~~~~~~~~~~~~--i~~~~~~-~~~~----------~~~~~~~~~~~------~~~~~~~~~~faf~-~~~~~~ 249 (373)
+++++..-+..+...-+. +.+.... +..+ +....-..+.. -+..++.--.||-+ |....|
T Consensus 205 Ia~v~~~vVPfMA~~Yi~~~~~Ii~~n~~~iP~~i~~If~sAF~~~aa~GG~~G~~v~~aI~~Gv~RGlfSNEAGmGsap 284 (452)
T COG1115 205 IAKVSSKVVPFMAILYVLVALVIIVLNISQIPAVIALIFSSAFGPKAAAGGFAGYTVAQAIRNGVKRGLFSNEAGMGSAP 284 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhHHHHHHHHHhcCCchhhhhhhhhHHHHHHHHHHHHHHhhcccccCCcch
Confidence 888888776654432221 1111111 1110 00000111111 12334444667776 566777
Q ss_pred hHhhhcc--CchhhHHHHHHHHHH-----HHHHHHHHHHHHHHHhcCCchhh-hhh-----cCCCchHHHHHHHHHHHHH
Q 017309 250 NIYQSMA--DKTKFTKALITCFAL-----CVLIYGGVAVMGFLMFGQGTLSQ-ITL-----NMPPHAFASKVAVWTTVIN 316 (373)
Q Consensus 250 ~i~~~m~--~p~~~~~~i~~s~~~-----~~~~Y~~~g~~gy~~fg~~~~~~-il~-----n~~~~~~~~~i~~~~~~i~ 316 (373)
..+.+-+ +|.|=--+-..++.+ |+.-=+++=+.+.+..++...+. +++ .++ ++...+..+.+.+-
T Consensus 285 ~aaAaA~~~hPv~QGlv~~~gvfiDT~iVCt~Ta~iIL~sg~~~~~~~~~G~~ltq~A~~~~~g--~~G~~fv~i~l~lF 362 (452)
T COG1115 285 IAAAAAKTDHPVKQGLVQMLGVFIDTLVVCTATAFIILLSGAWNSGGGLSGAALTQAAFSSHLG--SWGSYFVAIALFLF 362 (452)
T ss_pred hHHHhhcCCCcHHHhHHHHhhhhhhhhHHhhHHHHHHHHcCCcccCCCCchHHHHHHHHHHhcC--ccHHHHHHHHHHHH
Confidence 7766654 664322333333333 33222222222333333321221 221 223 23333444555566
Q ss_pred HHHhhhhhhchhHHHHHHHcCCCCCcchhhHHHHHHHHHHHH
Q 017309 317 PFTKYALLMNPLARSIEELLPAGISNNYWCFILLRTALVFSS 358 (373)
Q Consensus 317 ~~~s~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (373)
.++|.--..+-..++++.+..++ +.-...|...+...
T Consensus 363 afTTIlg~yyyge~~~~fl~~~k-----~~~~~~r~~~l~~v 399 (452)
T COG1115 363 AFTTILGWYYYGEKNIEFLFGSK-----KAILLYRLIVLAMV 399 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCc-----hHHHHHHHHHHHHH
Confidence 66666666777777787777322 33344555544443
No 90
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=94.99 E-value=3.6 Score=39.54 Aligned_cols=174 Identities=12% Similarity=0.114 Sum_probs=105.7
Q ss_pred hCCCCCChHHHHHHhc-CcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHh
Q 017309 102 SKEGITTYPDIGEAAF-GKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLP 180 (373)
Q Consensus 102 ~~~~~~~y~~l~~~~~-G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~p 180 (373)
|+-++.|+.|...+=+ -++.|.+..+.-++..+...++.+.-.+..+..+++.- ...-+++..+++..
T Consensus 99 Rk~GkyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~gv~-----------~~vgv~ig~ilm~~ 167 (529)
T COG4147 99 RKLGKYTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLGVP-----------YHVGVVIGGILMMV 167 (529)
T ss_pred HhcCCcchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCC-----------ceeehhhHhHHHHH
Confidence 4778899998865444 45677777766666666677778888888888776521 22334455556666
Q ss_pred hhcccCCchhhHHHHHHHHHHHH----HHHhhheeccccCcc----------c----CCCCccccccchhhhhhhHhhhc
Q 017309 181 TIWLRDLRVISYLSATGVVATIL----IVLCVLFLGTIEGIG----------F----HPTGQVVKWSGMPFAIGIYGFCY 242 (373)
Q Consensus 181 l~~~~~l~~l~~~s~~~~~~~~~----~~~~i~~~~~~~~~~----------~----~~~~~~~~~~~~~~~~~~~~faf 242 (373)
....-.++...|.+.+--+..+. +.+.+.+....++.+ . +...+....++-...++..+--.
T Consensus 168 Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~~isl~~aLm 247 (529)
T COG4147 168 YVVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLLYKDPIDFISLGFALM 247 (529)
T ss_pred HHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCCcccCHHHHHHHHHHHH
Confidence 66777888888888765433222 222222222111110 0 01111222244555555555555
Q ss_pred ccceehhhHhhh-ccCc--hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017309 243 SGHSVFPNIYQS-MADK--TKFTKALITCFALCVLIYGGVAVMGFLM 286 (373)
Q Consensus 243 ~~~~~~~~i~~~-m~~p--~~~~~~i~~s~~~~~~~Y~~~g~~gy~~ 286 (373)
.|...+|.+.-. ..-| ++-|+.+.++...+..+|+..-..|+.+
T Consensus 248 ~GTAgLPHil~RFfTvp~~k~AR~Sv~wA~~fIg~fYi~~~~ig~~A 294 (529)
T COG4147 248 VGTAGLPHILMRFFTVPDAKEARKSVFWATGFIGIFYILTPIIGAGA 294 (529)
T ss_pred HccCCCCeEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777777433 2234 5788999999999999999988777654
No 91
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=93.55 E-value=1.7 Score=41.02 Aligned_cols=81 Identities=22% Similarity=0.363 Sum_probs=62.8
Q ss_pred CCCChHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcc
Q 017309 105 GITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWL 184 (373)
Q Consensus 105 ~~~~y~~l~~~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~ 184 (373)
+.+=..+..++.||+.|..+..+++.+.|.-+++.....++|+..+..+... +..|+.+..++.+-.+..
T Consensus 261 G~~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF~~~~p~~S----------Y~~~v~if~i~sflvan~ 330 (431)
T COG1114 261 GGQILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEFFSKLVPKLS----------YKTWVIIFTLISFLVANL 330 (431)
T ss_pred hHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc----------HHHHHHHHHHHHHHHHHh
Confidence 3344567789999999999999999999999999999999999999988532 455666666666655555
Q ss_pred cCCchhhHHHHH
Q 017309 185 RDLRVISYLSAT 196 (373)
Q Consensus 185 ~~l~~l~~~s~~ 196 (373)
+++.+-.+|.-
T Consensus 331 -GL~~Ii~isvP 341 (431)
T COG1114 331 -GLEQIIKISVP 341 (431)
T ss_pred -hHHHHHHHHHH
Confidence 56666555554
No 92
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=93.12 E-value=1.1 Score=43.09 Aligned_cols=77 Identities=14% Similarity=0.160 Sum_probs=61.7
Q ss_pred hHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCc
Q 017309 109 YPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLR 188 (373)
Q Consensus 109 y~~l~~~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~ 188 (373)
....+++.+|++++.+..+.+++.|+-+++.....++|++++..+ . ++..+..+..++.++++.. +++
T Consensus 267 l~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~-i----------sY~~~v~i~~l~S~~lSn~-G~~ 334 (439)
T PRK15433 267 LHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP-L----------SYRTLVFILGGFSMVVSNL-GLS 334 (439)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-C----------cHHHHHHHHHHHHHHHHHh-HHH
Confidence 345678999999999999999999999999999999999998764 1 2456777778888877777 666
Q ss_pred hhhHHHHHH
Q 017309 189 VISYLSATG 197 (373)
Q Consensus 189 ~l~~~s~~~ 197 (373)
++-..+.--
T Consensus 335 ~II~~s~Pi 343 (439)
T PRK15433 335 QLIQISVPV 343 (439)
T ss_pred HHHHHHHHH
Confidence 666655543
No 93
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=92.91 E-value=9.1 Score=36.68 Aligned_cols=76 Identities=14% Similarity=0.053 Sum_probs=51.3
Q ss_pred CChHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccC
Q 017309 107 TTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRD 186 (373)
Q Consensus 107 ~~y~~l~~~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~ 186 (373)
.+..|..++.++|+..++..+...+....+.++..+..+--++-+..- +..+-.++..+..+-....|+
T Consensus 77 ~~laq~ir~~y~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~~i-----------p~~~g~iItav~~~iil~~~~ 145 (416)
T COG1914 77 KGLAEAIRERYLPGLGILLWILAEIAGIATDIAEVAGIAIALNLLFGI-----------PLIIGAVITAVDVLIILLLKG 145 (416)
T ss_pred CcHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----------hHHHHHHHHHHHHHHHHHhcc
Confidence 467788888899999999999888888888888888888777766532 133444555555444444443
Q ss_pred CchhhHH
Q 017309 187 LRVISYL 193 (373)
Q Consensus 187 l~~l~~~ 193 (373)
.+.+-.+
T Consensus 146 ~r~~E~~ 152 (416)
T COG1914 146 YRLLERV 152 (416)
T ss_pred hHHHHHH
Confidence 4444433
No 94
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=92.69 E-value=11 Score=37.01 Aligned_cols=163 Identities=13% Similarity=0.050 Sum_probs=74.6
Q ss_pred CCCCCHHHHHHHHHHHHHhHhhhHH----HHHHHhh-------cH----H-HHHHHHHHHHHHHHHHH-----HHHHhhh
Q 017309 43 AHGCSFTQTIFNGINVMAGVGLLST----PYTVKEA-------GW----A-SLVVLLLFAVVCCYTAS-----LMRYCFE 101 (373)
Q Consensus 43 ~~~~s~~~~~~~l~~~~iG~Gil~l----P~~~~~~-------G~----~-g~i~~~~~~~~~~~~~~-----~l~~~~~ 101 (373)
+++-|.++=...++.+-+|+|++.- |....+. +- . +.-...+=.....|+.+ .+....-
T Consensus 72 kPefS~~sW~aMlf~aGig~GivfwgvaEP~~~~~~pP~~~~p~s~~A~~~A~~~~~fHWG~~~Wa~Y~~~~l~~ay~~y 151 (485)
T PF02028_consen 72 KPEFSTFSWFAMLFCAGIGAGIVFWGVAEPLYHYQSPPFGIEPGSPEAAEWAMAYSFFHWGFHAWAIYALVGLAIAYFFY 151 (485)
T ss_dssp --SS-HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHS-STT-TTT-HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCchHHHHHHHHHHhcchhhcchhHhhHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHheeee
Confidence 3356667778899999999998742 2222111 10 0 11111111111111111 1111111
Q ss_pred hCCCCCChHHHHHHhcCc----chhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccC-chhHHHHHHHH
Q 017309 102 SKEGITTYPDIGEAAFGK----YGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLD-STHLFGILTAL 176 (373)
Q Consensus 102 ~~~~~~~y~~l~~~~~G~----~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~i~~~ 176 (373)
++.+..+.++..+-.+|+ +.+.++|+...+...+....-+-....++..-+..... .... ..+..+++...
T Consensus 152 ~k~~~~~~ss~l~pl~g~~~~g~~g~~ID~l~i~a~~~GvatslGlg~~qi~~gl~~~~G----i~~~~~~~~~ii~~~~ 227 (485)
T PF02028_consen 152 NKGKPLRISSALYPLLGDRINGPLGKIIDILAIFATIFGVATSLGLGVPQISAGLSSLFG----IPNTFGLQIIIIIVIT 227 (485)
T ss_dssp TS---SSGGGGCHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT----SSSTHHHHHHHHHHHH
T ss_pred ecCCCCchhhhhhhhcCCcccCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcC----CCCchHHHHHHHHHHH
Confidence 233334455555555553 35677887777766666655555555555544433211 1101 12223334444
Q ss_pred HHHhhhcccCC-chhhHHHHHHHHHHHHHHHhhh
Q 017309 177 IVLPTIWLRDL-RVISYLSATGVVATILIVLCVL 209 (373)
Q Consensus 177 i~~pl~~~~~l-~~l~~~s~~~~~~~~~~~~~i~ 209 (373)
+++..+....+ |.++++|.+.....+...+.++
T Consensus 228 ~i~~~S~~~Gl~kGIk~LS~~n~~l~~~ll~~vl 261 (485)
T PF02028_consen 228 VIFTISAVSGLDKGIKRLSNINVYLAFALLLFVL 261 (485)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666 4477777766555444444333
No 95
>PRK00701 manganese transport protein MntH; Reviewed
Probab=92.11 E-value=12 Score=36.24 Aligned_cols=46 Identities=7% Similarity=-0.072 Sum_probs=33.2
Q ss_pred CCChHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 017309 106 ITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSL 151 (373)
Q Consensus 106 ~~~y~~l~~~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~ 151 (373)
..+..|..++-+||+..++..+...+...+.......-.+--++.+
T Consensus 93 G~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll 138 (439)
T PRK00701 93 GRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLL 138 (439)
T ss_pred CCCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999998888777666666666666666555555443
No 96
>PLN02680 carbon-monoxide oxygenase
Probab=91.84 E-value=6.2 Score=34.34 Aligned_cols=108 Identities=11% Similarity=0.201 Sum_probs=71.6
Q ss_pred cCcccCC--CCccccccchhhhhhhHhhhcccceehhhHhhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch
Q 017309 215 EGIGFHP--TGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVAVMGFLMFGQGTL 292 (373)
Q Consensus 215 ~~~~~~~--~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~i~~s~~~~~~~Y~~~g~~gy~~fg~~~~ 292 (373)
++..+++ +...+|+..+....|.+... +...+. ++..+.+++.+|.++...-...++..++|+.....+.++.
T Consensus 34 gG~aw~~~~~~~~Fn~HPlLM~~Gfi~l~--geAIL~--yr~~~~~k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~~- 108 (232)
T PLN02680 34 GGLALSSDNKDLIFNVHPVLMVIGLVLLN--GEAMLA--YKTVPGTKNLKKLVHLTLQFLAFCLSLIGVWAALKFHNEK- 108 (232)
T ss_pred ccccccCCCCcceEechHHHHHHHHHHHH--HHHHhc--cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-
Confidence 3444433 34478988888877776632 222222 3445556778899999999999999999997766665432
Q ss_pred hhhhhcCCCchHHHHHHHHHHHHHHHHhhhhhhchh
Q 017309 293 SQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPL 328 (373)
Q Consensus 293 ~~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~~~ 328 (373)
++.+-++-+.+...+...++.++.+..+....+|.
T Consensus 109 -~~~nfySlHSWlGl~t~iL~~lQ~~~Gf~~f~~P~ 143 (232)
T PLN02680 109 -GIDNFYSLHSWLGLACLFLFSLQWAAGFVTFWYPG 143 (232)
T ss_pred -CccccccHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 33222344566666677777888888888777775
No 97
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=91.38 E-value=18 Score=36.70 Aligned_cols=53 Identities=15% Similarity=0.213 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHHHHhHhh-hHHHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHH
Q 017309 46 CSFTQTIFNGINVMAGVGL-LSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRY 98 (373)
Q Consensus 46 ~s~~~~~~~l~~~~iG~Gi-l~lP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~ 98 (373)
.+..+-.+..++..+|-|= .=.|+...+.|.. .++-.+++.++.-.-...|--
T Consensus 38 ~~~~efllS~ig~~vGlgNvwRFP~~~y~nGGgaFLIpY~i~l~l~GlP~~~LE~ 92 (629)
T KOG3660|consen 38 KSKIEFLLSCLGYAVGLGNVWRFPYLAYKNGGGAFLIPYLIVLFLFGLPLFFLEM 92 (629)
T ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHhcchHHHHHH
Confidence 4778889999999999995 4599988777754 555555555554444444433
No 98
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=91.36 E-value=1.6 Score=44.00 Aligned_cols=104 Identities=13% Similarity=0.125 Sum_probs=73.3
Q ss_pred CCHHHHHHHHHHHHHhHhhhH-HHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhh--CCCCCChHHHHHHhcCcch
Q 017309 46 CSFTQTIFNGINVMAGVGLLS-TPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFES--KEGITTYPDIGEAAFGKYG 121 (373)
Q Consensus 46 ~s~~~~~~~l~~~~iG~Gil~-lP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~--~~~~~~y~~l~~~~~G~~~ 121 (373)
.+....+.=.+..+.|.=.+- +-|.+..+|.. +.++.++++..+..++.-+...+.+ .+.-.+|.-+.+ .+||-.
T Consensus 115 Gt~mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGGsYfmISR-sLGPEF 193 (1075)
T KOG2082|consen 115 GTLMGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGGSYFMISR-SLGPEF 193 (1075)
T ss_pred ceeeeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCeeEEEec-ccCccc
Confidence 344444555667777876543 89999999999 9999999999999888888776532 234456655544 457766
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 017309 122 RLLISVLLYTELYSYCVEFIILEGDNLTS 150 (373)
Q Consensus 122 ~~~~~i~~~~~~~g~~~~y~i~~~~~l~~ 150 (373)
+-.+.++..+........|+.-.-|.+-.
T Consensus 194 GgAVGlcFYLgtT~AaaMYIlGaVEi~L~ 222 (1075)
T KOG2082|consen 194 GGAVGLCFYLGTTVAAAMYILGAVEIFLT 222 (1075)
T ss_pred cceeeehhhhhhHHHHHHHHHhHHHHHHH
Confidence 66777777777777777787777666544
No 99
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=90.32 E-value=6.9 Score=32.59 Aligned_cols=108 Identities=11% Similarity=0.127 Sum_probs=70.5
Q ss_pred cCcccCCCCccccccchhhhhhhHhhhcccceehhhHhhhc---cCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 017309 215 EGIGFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSM---ADKTKFTKALITCFALCVLIYGGVAVMGFLMFGQGT 291 (373)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m---~~p~~~~~~i~~s~~~~~~~Y~~~g~~gy~~fg~~~ 291 (373)
++..++.+...+||..+....|.+.. .....-.++.. +.+++.+|.++...-...++..++|+.....+-++.
T Consensus 24 gG~~w~~~~~~Fn~HP~lMv~Gfi~L----~geAiL~Yr~~~~~~~~k~~~K~~H~~L~~~Al~~~vvGl~avf~~hn~~ 99 (179)
T cd08762 24 GGFAWDGSSKNFNWHPVLMVTGMVVL----YGNAALVYRIPLTWGGPKLPWKLLHAGLLLLAFILTVIGLCAVFNFHNVH 99 (179)
T ss_pred CccCCCCCCCceeehHHHHHHHHHHH----HHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 45556655557888877776666554 12222223322 235667789999999999999999998888876543
Q ss_pred hhhhhhcCCCchHHHHHHHHHHHHHHHHhhhhhhchh
Q 017309 292 LSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPL 328 (373)
Q Consensus 292 ~~~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~~~ 328 (373)
.+-+.++=+.+.......++.++-+..+....+|.
T Consensus 100 --~~~nlySlHSWlGl~t~~Lf~lQ~~~Gf~~f~~p~ 134 (179)
T cd08762 100 --HTANLYSLHSWVGICTVALFTCQWVMGFTSFLLPW 134 (179)
T ss_pred --CccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33222333456655666777888888888877775
No 100
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=88.89 E-value=23 Score=34.16 Aligned_cols=265 Identities=15% Similarity=0.108 Sum_probs=124.0
Q ss_pred CHHHHHHHHHHHHHhHhhhHHHHHH-Hhhc--HH-HHHHHHHHHHHHHH-HHHHHHHhhhhCCCCCChHHHHHHhcCcch
Q 017309 47 SFTQTIFNGINVMAGVGLLSTPYTV-KEAG--WA-SLVVLLLFAVVCCY-TASLMRYCFESKEGITTYPDIGEAAFGKYG 121 (373)
Q Consensus 47 s~~~~~~~l~~~~iG~Gil~lP~~~-~~~G--~~-g~i~~~~~~~~~~~-~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~ 121 (373)
.....-+.++....|+|=|-.|-.. .++| |. +.+-+++.++.--. +...+. +.+ .+++|+++++ ||+.
T Consensus 9 ~~l~iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgiiava-----~~~-g~~~~l~~rv-~~~f 81 (439)
T PRK15433 9 DIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVALA-----KVG-GGVDSLSTPI-GKVA 81 (439)
T ss_pred HHHHHHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHh-----hcC-CCHHHHhhhc-chHH
Confidence 3566788999999999999998877 4566 44 55555544433222 111111 222 4788888876 4554
Q ss_pred hhHHHHHHHHHHHH--------HHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccC--Cchhh
Q 017309 122 RLLISVLLYTELYS--------YCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRD--LRVIS 191 (373)
Q Consensus 122 ~~~~~i~~~~~~~g--------~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~--l~~l~ 191 (373)
+.+...++.+.. | ..++|-..+ ..+++. + .. ....+.++.+.+.+-++.-++ ++.+.
T Consensus 82 ~~~f~~~i~l~I-GP~~aiPRtaavsfEm~i----~p~~~~------~-~~-~~~ifs~iFF~i~~~l~l~p~klvd~iG 148 (439)
T PRK15433 82 GVLLATVCYLAV-GPLFATPRTATVSFEVGI----APLTGD------S-AL-PLFIYSLVYFAIVILVSLYPGKLLDTVG 148 (439)
T ss_pred HHHHHHHHHHHH-hhccccCCccccchhhee----eccCCc------c-cH-HHHHHHHHHHHHHHHHHcChhhHHHHhH
Confidence 444433222211 1 011111111 111110 0 01 122344455555555554433 44444
Q ss_pred HHHHHHHHHHHHHHHhhheeccccCcccC-CCCccc-------cc-c--chhhhhhhHhhhcccceehhhHhh-hccCch
Q 017309 192 YLSATGVVATILIVLCVLFLGTIEGIGFH-PTGQVV-------KW-S--GMPFAIGIYGFCYSGHSVFPNIYQ-SMADKT 259 (373)
Q Consensus 192 ~~s~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~-------~~-~--~~~~~~~~~~faf~~~~~~~~i~~-~m~~p~ 259 (373)
++-.-.++. ..+.++..+...+.+.. .+.... ++ + +-+.+++...|+- ..+-.+.+ ..++++
T Consensus 149 K~LTP~LL~---~l~~lii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMDalaal~Fg~---iii~~i~~~G~~~~~ 222 (439)
T PRK15433 149 NFLAPLKII---ALVILSVAAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGI---VIVNAARSRGVTEAR 222 (439)
T ss_pred HHHHHHHHH---HHHHHHHHHHhcCCCCCCCcchhhhhhhHHHHHHhhHHHHHHHHHHHHHH---HHHHHHHHcCCCCHH
Confidence 444333322 22233333333222111 110111 11 1 2234555555553 33334443 366776
Q ss_pred hhHH----HHHHHHHHHHHHHHHHHHHHHHH---hcCC-chhhhhhcCCC---chHHHHHHHHHHHHHHHHhhhhhhchh
Q 017309 260 KFTK----ALITCFALCVLIYGGVAVMGFLM---FGQG-TLSQITLNMPP---HAFASKVAVWTTVINPFTKYALLMNPL 328 (373)
Q Consensus 260 ~~~~----~i~~s~~~~~~~Y~~~g~~gy~~---fg~~-~~~~il~n~~~---~~~~~~i~~~~~~i~~~~s~pl~~~~~ 328 (373)
+..| +-..+...-.++|...+.+|... +++. ..+.++...-. ++....+..+...+.++.|-.-....+
T Consensus 223 ~~~k~t~~ag~ia~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~ 302 (439)
T PRK15433 223 LLTRYTVWAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCAC 302 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5444 44455566667888888887654 2222 22334333211 122333344445556666666667777
Q ss_pred HHHHHHHcC
Q 017309 329 ARSIEELLP 337 (373)
Q Consensus 329 ~~~~~~~~~ 337 (373)
.+-+++.++
T Consensus 303 a~~f~~~~~ 311 (439)
T PRK15433 303 AEFFAQYVP 311 (439)
T ss_pred HHHHHhhcC
Confidence 777777664
No 101
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=88.47 E-value=22 Score=33.37 Aligned_cols=82 Identities=17% Similarity=0.179 Sum_probs=51.5
Q ss_pred CCCChHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhc-
Q 017309 105 GITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIW- 183 (373)
Q Consensus 105 ~~~~y~~l~~~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~- 183 (373)
...+..|..++-+||+..+...+...+.............+.-++.+. .. + ...+.++..+..+-+..
T Consensus 40 Tg~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~-g~---------~-~~~~~~~~~~~~~~ll~~ 108 (358)
T PF01566_consen 40 TGKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLF-GI---------P-LWIWVLLVAVIAILLLWL 108 (358)
T ss_pred cCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CC---------C-cHHHHHHHHHHHHHHHHH
Confidence 345777888888999988888888888777777777777766666554 21 1 23344444444333333
Q ss_pred -ccCCchhhHHHHHH
Q 017309 184 -LRDLRVISYLSATG 197 (373)
Q Consensus 184 -~~~l~~l~~~s~~~ 197 (373)
.++.+.+-++...-
T Consensus 109 ~~~~y~~~E~~~~~l 123 (358)
T PF01566_consen 109 SSGGYRRLERILKVL 123 (358)
T ss_pred HhccchHHHHHHHHH
Confidence 55666666555543
No 102
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=86.28 E-value=34 Score=33.25 Aligned_cols=291 Identities=14% Similarity=0.084 Sum_probs=135.8
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhHhhhHHHHHHHhhcH--H-HHHHHHHHHHHHHHHHHHHHHhhhhCCCC---CChHHHH
Q 017309 40 LPIAHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGW--A-SLVVLLLFAVVCCYTASLMRYCFESKEGI---TTYPDIG 113 (373)
Q Consensus 40 ~~~~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~--~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~---~~y~~l~ 113 (373)
.+.+|.=|+++-...=....++++..-+..+--+.|. - +++...+.-.++. ..+. ....++. .++.-..
T Consensus 50 ~~~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~vG~~~~~---~f~~--lns~~G~~yhIsFpv~s 124 (572)
T KOG2466|consen 50 PPSRRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVWVGYLFTA---IFLV--LNSRPGSDYHISFPVLS 124 (572)
T ss_pred CcccccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHHHHHHHHH---HHHH--HccCCCcccccceeeee
Confidence 4455667888877766666667666666666667773 3 5444333222221 1222 1223332 3566666
Q ss_pred HHhcCcc---hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCC------CCC-c-ccCchhHHHHHHHHHHHhhh
Q 017309 114 EAAFGKY---GRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLD------WPG-F-QLDSTHLFGILTALIVLPTI 182 (373)
Q Consensus 114 ~~~~G~~---~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~------~~~-~-~~~~~~~~~~i~~~i~~pl~ 182 (373)
+..||-+ +..+..+++.+..+|.. .-+.++.++-+++....+ ..+ . ..+......++.-++.+|+.
T Consensus 125 R~sFGiygS~~pIi~R~vma~vwYg~~---awiGgecV~lmL~si~~~~~hipntl~~~~~tt~e~i~FfIFwv~s~~~~ 201 (572)
T KOG2466|consen 125 RSSFGIYGSLWPIINRVVMACVWYGVN---AWIGGECVQLMLKSIFKSFSHIPNTLGKPGTTTYEFIGFFIFWVASLPFY 201 (572)
T ss_pred eeehhhhHhHHHHHHHHHHHHhhhhhh---hhhhhhhHHHHHHHHhhhhhcCccccCCCCCchHHHHHHHHHHHHhhhee
Confidence 6666655 44455555555555532 233444444444322211 111 0 11112334556667777766
Q ss_pred cccCCchhhHHHHHHHHHHHHHHHh-hheeccc-cC--cccCCCCccccccchhhhhhhHhhhcc----cceehhhHhhh
Q 017309 183 WLRDLRVISYLSATGVVATILIVLC-VLFLGTI-EG--IGFHPTGQVVKWSGMPFAIGIYGFCYS----GHSVFPNIYQS 254 (373)
Q Consensus 183 ~~~~l~~l~~~s~~~~~~~~~~~~~-i~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~faf~----~~~~~~~i~~~ 254 (373)
++ ..++++++=....+.+....+. ++|.... ++ .-.+++....+.......+-.+..++. ...|.|...+-
T Consensus 202 ~~-~p~~ir~lf~~ka~~t~fA~~g~LIw~l~kAhG~G~l~~~~st~~gs~~aWa~~~~i~~~~~~fstl~~N~pDFsRF 280 (572)
T KOG2466|consen 202 WF-PPYKIRHLFTWKAVLTPFAAFGFLIWLLKKAHGLGHLFDSKSTVSGSAHAWAFVRSIMSCIANFSTLIVNAPDFSRF 280 (572)
T ss_pred ec-cHHHhhhHHHHHHhhhHHHHHHHHHHHHHhcCCccccccCCCcccccchhHHHHHHHHHHHhccchhhccCchhHhh
Confidence 66 4444444433333332222222 2222221 11 111212222222222222222222222 45577788888
Q ss_pred ccCchhhHHHH----HHHHHHHHHHHHHHHHHHHHHhcCCchh--hhhhcCCCch------HHHHHHHHHHHHHHH-Hhh
Q 017309 255 MADKTKFTKAL----ITCFALCVLIYGGVAVMGFLMFGQGTLS--QITLNMPPHA------FASKVAVWTTVINPF-TKY 321 (373)
Q Consensus 255 m~~p~~~~~~i----~~s~~~~~~~Y~~~g~~gy~~fg~~~~~--~il~n~~~~~------~~~~i~~~~~~i~~~-~s~ 321 (373)
-|+|.+....- -..+.+..++=++++..++..||.+.-+ +++.++-++. .....+.+.++++.+ ...
T Consensus 281 ~ksp~a~~~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~W~Pldil~~~l~~~y~~G~RAgvFfi~~~f~laql~~NI 360 (572)
T KOG2466|consen 281 AKSPNAIWWGQLIALPLPFGLTPLIGVLVTSASKIIYGTNYWSPLDILNQWLDTNYSAGARAGVFFIGFGFALAQLGTNI 360 (572)
T ss_pred cCCCCccchhhhhhhhhhhhhhhheeeEehhhhhhhhcccccCHHHHHHHHhccccccccchhhhHHHHHHHHHHHhcch
Confidence 88886433222 3334444444445556788899976533 4666654331 111223333333332 344
Q ss_pred hhhhchhHHHHHHHcCCC
Q 017309 322 ALLMNPLARSIEELLPAG 339 (373)
Q Consensus 322 pl~~~~~~~~~~~~~~~~ 339 (373)
.-..+++..-+..++|+-
T Consensus 361 San~vaagnDl~~L~Pky 378 (572)
T KOG2466|consen 361 SANSVAAGNDLSALLPKY 378 (572)
T ss_pred hccccccchhhHhhCcce
Confidence 455566666666677653
No 103
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=84.90 E-value=23 Score=30.59 Aligned_cols=110 Identities=14% Similarity=0.150 Sum_probs=69.6
Q ss_pred cCcccCCCCccccccchhhhhhhHhhhcccceehhhHhhhccCch-hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh
Q 017309 215 EGIGFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKALITCFALCVLIYGGVAVMGFLMFGQGTLS 293 (373)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~-~~~~~i~~s~~~~~~~Y~~~g~~gy~~fg~~~~~ 293 (373)
++..++.+...+||..+....|.+...= ...-+++..++++ +..|.++...-...++..++|+.....+-++.+.
T Consensus 13 gG~~~~~~~~~Fn~HP~lM~~Gfi~l~g----eAiLvyr~~~~~~k~~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~ 88 (214)
T cd08764 13 GGFSWTGPGLQFNWHPLLMVLGLIFLYG----NSILVYRVFRNTRKKRLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKP 88 (214)
T ss_pred CccccCCCCceEeecHHHHHHHHHHHHH----HHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 4455655445688887777666643321 1112222333333 4468899999999999999998776666655443
Q ss_pred hhhhcCCCchHHHHHHHHHHHHHHHHhhhhhhchh
Q 017309 294 QITLNMPPHAFASKVAVWTTVINPFTKYALLMNPL 328 (373)
Q Consensus 294 ~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~~~ 328 (373)
.+-+-.+-+.+...+...++.++.+..+...++|.
T Consensus 89 ~~~hfySlHSwlGl~t~~L~~lQ~~~Gf~~fl~P~ 123 (214)
T cd08764 89 PIPNMYSLHSWLGLTAVILFSLQWVGGFVSFLFPG 123 (214)
T ss_pred CCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44333345566666677777788888887777774
No 104
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=84.27 E-value=1.2 Score=44.00 Aligned_cols=239 Identities=15% Similarity=0.092 Sum_probs=117.7
Q ss_pred CcccCCCCCCHHHHHHHHHHHHHhHh-hhHHHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHH
Q 017309 38 GELPIAHGCSFTQTIFNGINVMAGVG-LLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEA 115 (373)
Q Consensus 38 ~~~~~~~~~s~~~~~~~l~~~~iG~G-il~lP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~ 115 (373)
+-.-..|+..++...+.++.+.+|.+ ++++|.-.++.|.. ....+.....+.. ..+...-. -.+.+..+..|.-++
T Consensus 39 ~y~l~gr~m~~~Pv~~SL~aS~~s~~~~~gl~~e~~~~G~~~~~~~~~~l~~~~~-~~~~f~Pv-f~~~~v~~~~eYl~~ 116 (585)
T KOG2349|consen 39 EYFLGGRSMVWLPVAASLFASNISSVHFLGLPGEGYAYGIQYWFFEWNALLSVLL-LGWIFIPV-FYRLGVTTMYEYLEK 116 (585)
T ss_pred hhhhcCCcceEEEeehhhhhhhhcceeeecCchHHHHHHHHHHHHHHHHHHHHHh-hheEEEEE-EEecCeeehhHHHHH
Confidence 33445678888999999999999987 67899988888864 3222211111110 01111111 124566777888888
Q ss_pred hcCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhhHHHH
Q 017309 116 AFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSA 195 (373)
Q Consensus 116 ~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~ 195 (373)
-||+..+.+..+...+..+.....+...-+-.+++..+ +..+... .+..+++.-.+..-.++..-|.=.
T Consensus 117 Rf~~~~r~l~~l~f~l~~~~~l~v~~y~pal~~~qvtg--------~~~~l~~---~~~~~ic~~YT~~GGlkaVi~TDv 185 (585)
T KOG2349|consen 117 RFGGRVRYLATLSFILMIFLYLPVDMYAPALAINQVTG--------INLYLIV---VILGLICVFYTALGGLKAVIWTDV 185 (585)
T ss_pred HhcccchhhHHHHHHHHHHhheeeeEeehHHHHHHHhc--------cCceeeh---HHHHHHHHHHHHhcCeeEEEEhhH
Confidence 88888776666665555544333333333333333322 1111111 112222222333345555555544
Q ss_pred HHHHHHHHHHHhhheecccc--Cc-------------------ccCCCCccccccchhhhhhhHhhhcccceehhhHhhh
Q 017309 196 TGVVATILIVLCVLFLGTIE--GI-------------------GFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQS 254 (373)
Q Consensus 196 ~~~~~~~~~~~~i~~~~~~~--~~-------------------~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~ 254 (373)
+-...++.-.+.+.+.+... +. ..++.....-|+-+......-...|..+++..-=+-.
T Consensus 186 ~Q~~iml~~~~~v~i~gt~~vGG~~~V~e~a~~~gr~~~~~~~~~dp~vr~t~W~~~~Gg~~~~l~~~~vnQ~~VQR~ls 265 (585)
T KOG2349|consen 186 VQTVIMLGGVLAVMIKGTMKVGGLGRVLEKAFDAGRVNFVAEFLRDPTVRHTPWSLLFGGTIMWLSYYGVNQLIVQRYLS 265 (585)
T ss_pred HHHHHHHHHHHHHhheeehhcCcccceeeecccCCceeecccccCCCcccccchhHhcCCcHHHHHHHhhhHHHHhHHhc
Confidence 44444444444444433211 00 0011111222332333444444455555555444444
Q ss_pred ccCchhhHHHHHHHHHHHHH---HHHHHHHHHHHHhcC
Q 017309 255 MADKTKFTKALITCFALCVL---IYGGVAVMGFLMFGQ 289 (373)
Q Consensus 255 m~~p~~~~~~i~~s~~~~~~---~Y~~~g~~gy~~fg~ 289 (373)
+|+-++.++..........+ ++...|++.|..|.+
T Consensus 266 l~slk~ak~~~~~~~~~~~l~~~~~~~~G~i~~~~Y~~ 303 (585)
T KOG2349|consen 266 LPSLKHAKPSLLLFGYGVLLIMFIMVFVGMIIYALYTD 303 (585)
T ss_pred cccHHHhhhhhhhhhhHHHHHHHhhcccceeEeeeccc
Confidence 45556777766655544444 444556666666643
No 105
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=82.55 E-value=28 Score=34.28 Aligned_cols=50 Identities=14% Similarity=0.178 Sum_probs=40.1
Q ss_pred CChHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCC
Q 017309 107 TTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGAS 156 (373)
Q Consensus 107 ~~y~~l~~~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~ 156 (373)
.-..++-....||++...+..+.++..+..+++-....++....+-++-.
T Consensus 325 ~p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaRDg~ 374 (550)
T KOG1289|consen 325 QPIVQIYYQALGKKGAVFLLSLIIIALFFMGISSLTASSRLVYAFARDGG 374 (550)
T ss_pred ChHHHHHHHhcCCCceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhccCC
Confidence 34566677888999998888888888888889988888888887766543
No 106
>PLN02810 carbon-monoxide oxygenase
Probab=81.33 E-value=29 Score=30.12 Aligned_cols=107 Identities=15% Similarity=0.144 Sum_probs=67.4
Q ss_pred cCcccCCC--CccccccchhhhhhhHhhhcccceehhhHhhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch
Q 017309 215 EGIGFHPT--GQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVAVMGFLMFGQGTL 292 (373)
Q Consensus 215 ~~~~~~~~--~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~i~~s~~~~~~~Y~~~g~~gy~~fg~~~~ 292 (373)
++..++.. ...+||..+....|.+...= + ..-.++..+.+++.+|.++...=...++..++|+.....|-++.
T Consensus 34 gG~aw~~~~~~~~FN~HPvlMv~Gfi~l~g---e-AIL~Yr~~~~~k~~~K~iH~~lh~~Al~l~vvGl~Avf~~Hn~~- 108 (231)
T PLN02810 34 GGLAWEATNKNLIFNLHPVLMLIGLIIIGG---E-AIMSYKSLPLKKEVKKLIHLVLHAIALILGIFGICAAFKNHNES- 108 (231)
T ss_pred CcccccCCCCCceeeehHHHHHHHHHHHhh---H-HHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-
Confidence 44455533 44788887776666443321 1 11122344555677899999999999999999998887776543
Q ss_pred hhhhhcC-CCchHHHHHHHHHHHHHHHHhhhhhhchh
Q 017309 293 SQITLNM-PPHAFASKVAVWTTVINPFTKYALLMNPL 328 (373)
Q Consensus 293 ~~il~n~-~~~~~~~~i~~~~~~i~~~~s~pl~~~~~ 328 (373)
.+ .|+ +=+.+.......++.++-+..+-..++|.
T Consensus 109 -~i-~nlySLHSWlGl~tv~Lf~lQw~~Gf~~Fl~P~ 143 (231)
T PLN02810 109 -GI-ANLYSLHSWLGIGIISLYGIQWIYGFIVFFFPG 143 (231)
T ss_pred -CC-CceeeHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 23 332 33455555556667777777776666665
No 107
>PRK09950 putative transporter; Provisional
Probab=79.89 E-value=66 Score=31.81 Aligned_cols=164 Identities=14% Similarity=0.012 Sum_probs=84.1
Q ss_pred CCCCCHHHHHHHHHHHHHhHhhhHH----HHHHHh---hc----HH-----HHHHHHHHHHHHHHHHH-----HHHH-hh
Q 017309 43 AHGCSFTQTIFNGINVMAGVGLLST----PYTVKE---AG----WA-----SLVVLLLFAVVCCYTAS-----LMRY-CF 100 (373)
Q Consensus 43 ~~~~s~~~~~~~l~~~~iG~Gil~l----P~~~~~---~G----~~-----g~i~~~~~~~~~~~~~~-----~l~~-~~ 100 (373)
+++-|.++=...++.+-+|+|++.- |....+ .| -. +.-...+=..+..++.+ .+.. ..
T Consensus 81 kPefS~~sW~aMlf~aG~G~gllfwgvaEP~~h~~~Pp~g~e~~s~~A~~~A~~~t~fHWG~~aWaiY~l~~l~iaY~~~ 160 (506)
T PRK09950 81 KPEYSTLSWLFMFICAGLGSSTLYWGVMEWAYYYQTPGLNIAPRSPKALEYSVSYSFFHWGISAWATYALASLIMAYHFH 160 (506)
T ss_pred CCCccchhHHHHHHHHhhhhHHHHHhhHhHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3455666668889999999998732 332221 11 10 11111111112222222 2222 12
Q ss_pred hhCCCCCChHHHHHHhcCcc----hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHH
Q 017309 101 ESKEGITTYPDIGEAAFGKY----GRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTAL 176 (373)
Q Consensus 101 ~~~~~~~~y~~l~~~~~G~~----~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 176 (373)
-++.+..+.++..+-.+|++ .+.++|+...+...+....-+-....++..-+.....-..+ ...+..++....
T Consensus 161 ~rk~~pl~iss~~~pllG~~~~g~~G~~IDil~v~atv~GvatSLGlg~~qi~~gl~~l~Gi~~~---~~~~~~ii~vi~ 237 (506)
T PRK09950 161 VRKNKGLSLSGIIAAITGVKPQGPWGRLVDLMFLIATVGALTISLVVTAATFTRGLSALTGLPNN---FTVQAFVILLSG 237 (506)
T ss_pred hhcCCCCchHHhhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCc---hHHHHHHHHHHH
Confidence 23455567888888888853 56788877777766666665555555555544332210011 012233344444
Q ss_pred HHHhhhcccCC-chhhHHHHHHHHHHHHHHHhhh
Q 017309 177 IVLPTIWLRDL-RVISYLSATGVVATILIVLCVL 209 (373)
Q Consensus 177 i~~pl~~~~~l-~~l~~~s~~~~~~~~~~~~~i~ 209 (373)
+++.++....+ |.++++|.+.....+...+.++
T Consensus 238 ~if~~S~~~Gl~kGIk~LS~~N~~la~~ll~~vl 271 (506)
T PRK09950 238 VIFCLSSYIGIDNGLQRLSKMVGWGAFLFALLVL 271 (506)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhee
Confidence 55556666665 6677777766555544444433
No 108
>PRK09928 choline transport protein BetT; Provisional
Probab=79.21 E-value=80 Score=32.38 Aligned_cols=162 Identities=13% Similarity=-0.045 Sum_probs=75.5
Q ss_pred CCCHHHHHHHHHHHHHhHhhhHH----HHHHH------hhcH----H-HHHHHHHHHHHHHHHHHHHHHhh-----hhCC
Q 017309 45 GCSFTQTIFNGINVMAGVGLLST----PYTVK------EAGW----A-SLVVLLLFAVVCCYTASLMRYCF-----ESKE 104 (373)
Q Consensus 45 ~~s~~~~~~~l~~~~iG~Gil~l----P~~~~------~~G~----~-g~i~~~~~~~~~~~~~~~l~~~~-----~~~~ 104 (373)
+-|.++=+.+++.+-+|+|++.- |.... ..|- - +.....+=..+..|+.+.+.-.. -++.
T Consensus 92 efS~~sW~aMLFaAGmGigLmfwgvaEP~~h~~~PP~g~~~s~eAa~~Am~~t~FHWG~~aWAiYalvglalAYf~yr~~ 171 (679)
T PRK09928 92 EFSLLSWAAMLFAAGIGIDLMFFSVAEPVTQYMQPPEGAGQTIEAARQAMVWTLFHYGLTGWSMYALMGMALGYFSYRYN 171 (679)
T ss_pred CCCcchHHHHHHHHhhhhhheeehHHhHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcCC
Confidence 45555558889999999998732 33221 1111 1 22222222233333333332221 1233
Q ss_pred CCCChHHHHHHhcCcc----hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHh
Q 017309 105 GITTYPDIGEAAFGKY----GRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLP 180 (373)
Q Consensus 105 ~~~~y~~l~~~~~G~~----~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~p 180 (373)
..-+.++..+-++|++ .+.++|+.-++...+....-+-+...+++.-+.....-..+. ..+..+++...+++.
T Consensus 172 ~pl~issal~pllG~ri~G~~G~~IDi~av~~tvfGiaTSLGlGv~qi~~GL~~lfGi~~~~---~~q~~ii~vi~~i~~ 248 (679)
T PRK09928 172 LPLTIRSALYPIFGKRINGPIGHSVDIAAVIGTIFGIATTLGIGVVQLNYGLSVLFDIPESL---AAQAALIALSVIIAT 248 (679)
T ss_pred CCCchhHhhhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcc---HHHHHHHHHHHHHHH
Confidence 3356777777777743 456777666655554444444444444443332221100010 112233334444444
Q ss_pred hhcccCC-chhhHHHHHHHHHHHHHHHhhh
Q 017309 181 TIWLRDL-RVISYLSATGVVATILIVLCVL 209 (373)
Q Consensus 181 l~~~~~l-~~l~~~s~~~~~~~~~~~~~i~ 209 (373)
++....+ |.++++|.+.+...+...+.++
T Consensus 249 ~S~~sGl~KGIk~LS~lN~~La~~LllfVl 278 (679)
T PRK09928 249 ISVTSGVNKGIRVLSELNVLLALGLILFVL 278 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHheee
Confidence 5555554 5566666666555444443333
No 109
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=79.04 E-value=74 Score=31.87 Aligned_cols=86 Identities=19% Similarity=0.256 Sum_probs=45.9
Q ss_pred CCHHHHHHHHHHHHHhHhhh-HHHHHH-HhhcH---H-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcCc
Q 017309 46 CSFTQTIFNGINVMAGVGLL-STPYTV-KEAGW---A-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGK 119 (373)
Q Consensus 46 ~s~~~~~~~l~~~~iG~Gil-~lP~~~-~~~G~---~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~ 119 (373)
.+-.+.....++..++.|-. -.||-- ++.|+ + -.+++++.|+=-+|-=..+..-++ .+...-+..++=..-|
T Consensus 82 ~~K~eflLa~vgfaV~lgnvWrFpYlC~~nGGgaFlvpY~imli~~GvPLfymELaLGQ~~r-~g~~gvw~ri~P~l~G- 159 (629)
T KOG3659|consen 82 GSKTEFLLAVVGFAVDLGNVWRFPYLCYKNGGGAFLVPYTIMLIVGGVPLFYMELALGQYHR-QGCIGVWRRIAPALKG- 159 (629)
T ss_pred hhHHHHHHHHHHHhhcccccceeeheeeeCCCEeEhHHHHHHHHHhccHHHHHHHHHHHHhc-ccchhHHHHhCHHhcC-
Confidence 45567777788888888844 489944 55554 3 556666666655554444443322 3333334344443333
Q ss_pred chhhHHHHHHHHHH
Q 017309 120 YGRLLISVLLYTEL 133 (373)
Q Consensus 120 ~~~~~~~i~~~~~~ 133 (373)
.+.-++.++.+...
T Consensus 160 igy~i~~i~~~~~~ 173 (629)
T KOG3659|consen 160 IGYAICLIAFFVGL 173 (629)
T ss_pred CchhhhHHHHHHHH
Confidence 34444444444443
No 110
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=77.43 E-value=70 Score=31.29 Aligned_cols=47 Identities=11% Similarity=0.190 Sum_probs=34.8
Q ss_pred ChHHHHHHhcCc-chhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCC
Q 017309 108 TYPDIGEAAFGK-YGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPG 154 (373)
Q Consensus 108 ~y~~l~~~~~G~-~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~ 154 (373)
.+.++.+..+|. ++..++.+...+..++...+++...++.+..+-++
T Consensus 290 p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ard 337 (482)
T TIGR00907 290 PIAQIFYNALGNKAGAIFLLCLILVTSFFCAITCMTANSRMIYAFSRD 337 (482)
T ss_pred hHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466777777887 66666777777777888888888888887766543
No 111
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=76.26 E-value=17 Score=29.51 Aligned_cols=106 Identities=15% Similarity=0.234 Sum_probs=68.0
Q ss_pred cccCCCCccccccchhhhhhhHhhhcccceehhhHh--hhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhh
Q 017309 217 IGFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIY--QSMADKTKFTKALITCFALCVLIYGGVAVMGFLMFGQGTLSQ 294 (373)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~--~~m~~p~~~~~~i~~s~~~~~~~Y~~~g~~gy~~fg~~~~~~ 294 (373)
..|+.+...+|+..+....|.+... +.. +.... ...+.+++.+|.++...-...++..++|+.....+-++. +
T Consensus 3 ~~w~~~~~~Fn~HPlLm~~Gfi~l~--geA-iL~yr~~~~~~~~k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~--~ 77 (153)
T cd08765 3 LGWDGGAAEFNWHPVLMVIGFIFIQ--GIA-IIVYRLPWTWKCSKLLMKLIHAGLHILAFILAIISVVAVFVFHNAK--N 77 (153)
T ss_pred CCCCCCCCeeechHHHHHHHHHHHH--HHH-HHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcccc--C
Confidence 3455445578887777776654411 111 11111 111223567889999999999999999998777775442 2
Q ss_pred hhhcC-CCchHHHHHHHHHHHHHHHHhhhhhhchh
Q 017309 295 ITLNM-PPHAFASKVAVWTTVINPFTKYALLMNPL 328 (373)
Q Consensus 295 il~n~-~~~~~~~~i~~~~~~i~~~~s~pl~~~~~ 328 (373)
+ .|+ +-+.+...+...++.++.+..+...++|.
T Consensus 78 ~-~~fySlHSwlGl~t~~l~~lQ~~~Gf~~f~~P~ 111 (153)
T cd08765 78 I-PNMYSLHSWVGLAAVILYPLQLVLGISVYLLPV 111 (153)
T ss_pred C-CccccHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 2 233 33556666677778888899988888886
No 112
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=73.60 E-value=50 Score=28.82 Aligned_cols=107 Identities=11% Similarity=0.116 Sum_probs=71.4
Q ss_pred cCcccCCCC-ccccccchhhhhhhHhhhcccceehhhHhhhcc-CchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch
Q 017309 215 EGIGFHPTG-QVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMA-DKTKFTKALITCFALCVLIYGGVAVMGFLMFGQGTL 292 (373)
Q Consensus 215 ~~~~~~~~~-~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~-~p~~~~~~i~~s~~~~~~~Y~~~g~~gy~~fg~~~~ 292 (373)
++..|+.++ ..+|+..++.-+|.+.+ +....-+++--+ ..++.+|.++...=++.+.-.++|+.....+-++..
T Consensus 43 ~Glaw~~~~~~~fnlHP~lMviGfI~l----~GeAiL~YR~~r~~~k~~~KliH~~LH~~Alvl~i~gl~avf~~hn~~~ 118 (245)
T KOG1619|consen 43 GGLAWSSSPNKEFNLHPVLMVIGFIYL----QGEAILIYRVFRYTSKKVSKLIHLGLHIIALVLAIIGLCAVFDSHNLVG 118 (245)
T ss_pred CccCCCCCcchhcCcchHHHHHHHHHh----ccceeeeeehhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 445565544 57788777776666543 233333445534 445889999999999999999999999888876544
Q ss_pred hhhhhcC-CCchHHHHHHHHHHHHHHHHhhhhhhchh
Q 017309 293 SQITLNM-PPHAFASKVAVWTTVINPFTKYALLMNPL 328 (373)
Q Consensus 293 ~~il~n~-~~~~~~~~i~~~~~~i~~~~s~pl~~~~~ 328 (373)
..|+ +-+.+.......++..+-...|--.++|.
T Consensus 119 ---i~NfySLHSWlGl~~v~ly~~Q~v~GF~tfl~pg 152 (245)
T KOG1619|consen 119 ---IANFYSLHSWLGLCVVILYSLQWVFGFFTFLFPG 152 (245)
T ss_pred ---ccceeeHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 2333 33455555566667777777777766665
No 113
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=72.30 E-value=49 Score=26.57 Aligned_cols=101 Identities=14% Similarity=0.158 Sum_probs=63.5
Q ss_pred CCccccccchhhhhhhHhhhcccceehhhHhhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhcCCC
Q 017309 222 TGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVAVMGFLMFGQGTLSQITLNMPP 301 (373)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~i~~s~~~~~~~Y~~~g~~gy~~fg~~~~~~il~n~~~ 301 (373)
+...+||..+....|.+...=+. +.. ++..+.++|.+|.++...-...++..++|+.....+-++. .+.+-.+-
T Consensus 4 ~~~~Fn~HP~lM~~gfi~l~~eA---iL~-~r~~~~~k~~~k~iH~~l~~la~~~~vvGl~avf~~~~~~--~~~~~~Sl 77 (144)
T cd08766 4 KGLIFNVHPVLMVIGFIFLAGEA---ILA-YKTVPGSREVQKAVHLTLHLVALVLGIVGIYAAFKFHNEV--GIPNLYSL 77 (144)
T ss_pred CcceeeccHHHHHHHHHHHHHHH---HHH-hhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc--CccccccH
Confidence 34567777766666643332111 111 2234555677889999999999999999997666665443 22222233
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhhchh
Q 017309 302 HAFASKVAVWTTVINPFTKYALLMNPL 328 (373)
Q Consensus 302 ~~~~~~i~~~~~~i~~~~s~pl~~~~~ 328 (373)
+.+...+...++.++.+..+....+|.
T Consensus 78 HSwlGl~t~~L~~lQ~~~G~~~f~~P~ 104 (144)
T cd08766 78 HSWLGIGTISLFGLQWLFGFVTFWFPG 104 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 456656666777778887777677776
No 114
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=70.60 E-value=25 Score=25.08 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=16.6
Q ss_pred CCcchhHHhhhhhccccchhhh
Q 017309 8 LSEYEKEELDRISRTRSSLSEK 29 (373)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~ 29 (373)
|+|+|.+....+++..+.+|++
T Consensus 3 LSe~E~r~L~eiEr~L~~~DP~ 24 (82)
T PF11239_consen 3 LSEHEQRRLEEIERQLRADDPR 24 (82)
T ss_pred CCHHHHHHHHHHHHHHHhcCcH
Confidence 6788888777777777766665
No 115
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=65.10 E-value=1.5e+02 Score=29.37 Aligned_cols=160 Identities=12% Similarity=-0.065 Sum_probs=75.9
Q ss_pred CCCCCHHHHHHHHHHHHHhHhhhHH----HHHHHh---hcH--------H-HHHHHHHHHHHHHHHHHHHHH-----hhh
Q 017309 43 AHGCSFTQTIFNGINVMAGVGLLST----PYTVKE---AGW--------A-SLVVLLLFAVVCCYTASLMRY-----CFE 101 (373)
Q Consensus 43 ~~~~s~~~~~~~l~~~~iG~Gil~l----P~~~~~---~G~--------~-g~i~~~~~~~~~~~~~~~l~~-----~~~ 101 (373)
+++-|.++=...++.+-+|+|++.- |....+ .|. - +.-...+=..+..++.+.+.- ..-
T Consensus 83 kPefs~~sW~aMlf~aG~G~gllfwgvaEP~~h~~~PP~g~e~~s~~A~~~A~~~~~fHWG~~aWaiY~~~~la~ay~~y 162 (504)
T PRK03356 83 KPEFSTASWIFMMFASCTSAAVLFWGSIEIYYYISTPPFGLEPNSTGAKELGLAYSLFHWGPLPWATYSFLSVAFGYFFF 162 (504)
T ss_pred CCCccchHHHHHHHHHhhhhhhhhhhhhhHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence 3455556668889999999998732 433221 121 0 111112212222222222222 111
Q ss_pred hCCCC-CChHHHHHHhcCc-----chhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHH
Q 017309 102 SKEGI-TTYPDIGEAAFGK-----YGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTA 175 (373)
Q Consensus 102 ~~~~~-~~y~~l~~~~~G~-----~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~ 175 (373)
++... -+.++..+-.+|+ +.+.++|+...+...+....-+-....++..-+.....-..+ . ..+..+++..
T Consensus 163 ~~~~p~l~iss~~~pllG~~~~~g~~G~~IDil~v~atv~GvatSLGlg~~qi~~gl~~l~Gi~~~--~-~~~~~ii~~i 239 (504)
T PRK03356 163 VRKMDVIRPSSTLVPLVGEKHAKGLFGTIVDNFYLVALIFAMGTSLGLATPLVTECMQWLFGIPHT--L-QLDAIIITCW 239 (504)
T ss_pred hcCCCcccHHHHHHHHcCCCcccCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCc--h-HHHHHHHHHH
Confidence 22333 3678888888883 246777777666666655555555555554443332110001 1 1122233333
Q ss_pred HHHHhhhcccCC-chhhHHHHHHHHHHHHHH
Q 017309 176 LIVLPTIWLRDL-RVISYLSATGVVATILIV 205 (373)
Q Consensus 176 ~i~~pl~~~~~l-~~l~~~s~~~~~~~~~~~ 205 (373)
.+++-++....+ |.++++|.+-....+...
T Consensus 240 ~~if~~S~~~Gl~kGIk~LS~~N~~la~~ll 270 (504)
T PRK03356 240 IILNAICVACGLQKGVRIASDVRSYLSFLML 270 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555453 445666665544444333
No 116
>TIGR00909 2A0306 amino acid transporter.
Probab=59.71 E-value=1.7e+02 Score=28.06 Aligned_cols=48 Identities=13% Similarity=-0.005 Sum_probs=40.5
Q ss_pred CChHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCC
Q 017309 107 TTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPG 154 (373)
Q Consensus 107 ~~y~~l~~~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~ 154 (373)
....+..++..|+++..++.+...+..++...+.....++.+..+-++
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~d 311 (429)
T TIGR00909 264 APLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRD 311 (429)
T ss_pred cHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 346677788889999999999999999999999999999998877654
No 117
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=58.62 E-value=1.9e+02 Score=28.29 Aligned_cols=51 Identities=8% Similarity=-0.075 Sum_probs=31.5
Q ss_pred hCCCCCChHHHHHHhcCcc----hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 017309 102 SKEGITTYPDIGEAAFGKY----GRLLISVLLYTELYSYCVEFIILEGDNLTSLF 152 (373)
Q Consensus 102 ~~~~~~~y~~l~~~~~G~~----~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~ 152 (373)
++.+..+.++..+-.+|++ .+.++|+...+...+....-+-....++..-+
T Consensus 115 rk~~~~~iss~~~pllG~~~~g~~g~~ID~l~v~ati~G~atsLGlg~~qi~~gl 169 (453)
T TIGR00842 115 RKGLPLRLSSALVPLLGERVNGPIGKAIDIMALVATLFGVATSLGLGAPQINAGL 169 (453)
T ss_pred ecCCCCchhhhhhcccCCcccCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3555567888888888753 45677777666665555555555555554444
No 118
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=55.04 E-value=98 Score=31.59 Aligned_cols=60 Identities=10% Similarity=0.091 Sum_probs=36.6
Q ss_pred HHhHhhhHHHHHHH--hhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcCcc
Q 017309 59 MAGVGLLSTPYTVK--EAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKY 120 (373)
Q Consensus 59 ~iG~Gil~lP~~~~--~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~ 120 (373)
....++......+. +..+. .++.+++..+++..+.+...++. .++...+..+.+.++|-.
T Consensus 366 ~~v~~~~~~~~~~~~~~~p~~~~ilai~la~v~~~~~~~~~g~t~--~~P~~~~~~~sqli~g~~ 428 (624)
T PF03169_consen 366 SFVLAIIVVEAWFGQTQMPWWGLILAILLAFVFSIPSGRITGETG--INPVSGLNILSQLIFGLL 428 (624)
T ss_pred HHHHHHHHHhhhhcccCCchhhhHHHHHHHHHHHHHHHHHhhhcC--CCcchhhhHHHHHHHHHH
Confidence 33344556677773 34455 55555666677777777777662 355667777777777643
No 119
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=54.45 E-value=2.1e+02 Score=27.53 Aligned_cols=75 Identities=20% Similarity=0.256 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHHhHhhhHHHHHH-Hhhc---HHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcCcchh
Q 017309 47 SFTQTIFNGINVMAGVGLLSTPYTV-KEAG---WASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGR 122 (373)
Q Consensus 47 s~~~~~~~l~~~~iG~Gil~lP~~~-~~~G---~~g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~ 122 (373)
..+..-+.++.-..|+|=+-.|-.. .++| |.+.+-+++.++.- -++.-..-...+. +++++++++ |||.+
T Consensus 6 ~~~~~GfmLFalFFGAGNlIFPP~LG~~aG~~~~~A~lGFllTgVgl----PlLgiIa~a~~g~-~~~~l~~~i-~~~fg 79 (431)
T COG1114 6 DIIALGFMLFALFFGAGNLIFPPMLGLHAGEHVWPAILGFLLTGVGL----PLLGIIAVALYGG-GVESLATRI-GPWFG 79 (431)
T ss_pred hHHHHHHHHHHHHhcCCCccCChhhhhhcCccHHHHHHHHHHHHhhH----HHHHHHHhhccCC-CHHHHhhhc-cchHH
Confidence 3466678899999999988888766 3444 22433333333221 1222111112232 788888877 67766
Q ss_pred hHHHH
Q 017309 123 LLISV 127 (373)
Q Consensus 123 ~~~~i 127 (373)
.+..+
T Consensus 80 ~~f~~ 84 (431)
T COG1114 80 VLFAI 84 (431)
T ss_pred HHHHH
Confidence 55543
No 120
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=51.44 E-value=2.4e+02 Score=27.48 Aligned_cols=46 Identities=22% Similarity=0.276 Sum_probs=39.8
Q ss_pred hHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCC
Q 017309 109 YPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPG 154 (373)
Q Consensus 109 y~~l~~~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~ 154 (373)
..+++++.+|++++.++.+...+..+++..++....++.+..+-++
T Consensus 270 ~~~~~~~~~g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~amard 315 (473)
T TIGR00905 270 MAAVLEMIVGKWGAVLISLGLIISVLGSLLSWTMLAAEVPFSAAKD 315 (473)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 6788899999999999999889999999999999888888877554
No 121
>PLN02351 cytochromes b561 family protein
Probab=51.03 E-value=1.7e+02 Score=25.70 Aligned_cols=95 Identities=13% Similarity=0.036 Sum_probs=58.9
Q ss_pred cccchhhhhhhHhhhcccceehhhHhhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhcC-CCchHH
Q 017309 227 KWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVAVMGFLMFGQGTLSQITLNM-PPHAFA 305 (373)
Q Consensus 227 ~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~i~~s~~~~~~~Y~~~g~~gy~~fg~~~~~~il~n~-~~~~~~ 305 (373)
||..+....|.+...= ...-+++-.+.+++.+|.++...-...++..++|+.. .|-++ ++...|+ +-+.+.
T Consensus 52 n~HP~lMviGfi~L~g----eAILvYR~~~~~~k~~K~lH~~Lh~~Ali~~vvGl~a--~fh~~--~~~i~nlySLHSWl 123 (242)
T PLN02351 52 VLHPLLMVIGFILISG----EAILVHRWLPGSRKTKKSVHLWLQGLALASGVFGIWT--KFHGQ--DGIVANFYSLHSWM 123 (242)
T ss_pred cccHHHHHHHHHHHHH----HHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHH--HHhcc--cCCccchhHHHHHH
Confidence 6766655554433221 1112244556666678999999998888888888877 55432 2233333 334565
Q ss_pred HHHHHHHHHHHHHHhhhhhhchhH
Q 017309 306 SKVAVWTTVINPFTKYALLMNPLA 329 (373)
Q Consensus 306 ~~i~~~~~~i~~~~s~pl~~~~~~ 329 (373)
......++.++-+..+....+|.+
T Consensus 124 Gl~tv~Lf~lQwv~Gf~~F~~P~~ 147 (242)
T PLN02351 124 GLICVSLFGAQWLTGFMSFWHRGE 147 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC
Confidence 556666777788888777777764
No 122
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=48.06 E-value=45 Score=23.96 Aligned_cols=65 Identities=14% Similarity=0.083 Sum_probs=34.6
Q ss_pred hhhhHhhhcccceehhhHhhhccCchhh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhcC
Q 017309 234 AIGIYGFCYSGHSVFPNIYQSMADKTKF-TKALITCFALCVLIYGGVAVMGFLMFGQGTLSQITLNM 299 (373)
Q Consensus 234 ~~~~~~faf~~~~~~~~i~~~m~~p~~~-~~~i~~s~~~~~~~Y~~~g~~gy~~fg~~~~~~il~n~ 299 (373)
..|++..+-.|.....+..+.-.+|.+. -|++. ...++..+-+.+|++.|..||...++.....+
T Consensus 16 i~GIiLL~~ACIFAfidFSK~~s~~~~~~wRalS-ii~FIlG~vl~lGilifs~y~~C~~~~~~~r~ 81 (91)
T PHA02680 16 ICGVLLLTAACVFAFVDFSKNTSNVTDYVWRALS-VTCFIVGAVLLLGLFVFSMYRKCSGSMPYERL 81 (91)
T ss_pred HHHHHHHHHHHHHhhhhhhccCCCCcchhHHHHH-HHHHHHHHHHHHHHHHHHHhcccCCCceeecc
Confidence 3445555555555555555544455543 33333 23334445567788999999855544333333
No 123
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.97 E-value=1.1e+02 Score=23.25 Aligned_cols=36 Identities=17% Similarity=0.105 Sum_probs=22.1
Q ss_pred HHHHHHHhHhhhHHHHHHHhhcHHHHHHHHHHHHHH
Q 017309 54 NGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVC 89 (373)
Q Consensus 54 ~l~~~~iG~Gil~lP~~~~~~G~~g~i~~~~~~~~~ 89 (373)
.+-+.++|+++=-+---|..+...|+|.++++++..
T Consensus 52 fIsGilVGa~iG~llD~~agTsPwglIv~lllGf~A 87 (116)
T COG5336 52 FISGILVGAGIGWLLDKFAGTSPWGLIVFLLLGFGA 87 (116)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 445677787765555566666666666666555443
No 124
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=44.59 E-value=2.9e+02 Score=26.37 Aligned_cols=47 Identities=13% Similarity=0.070 Sum_probs=29.1
Q ss_pred CCCChHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 017309 105 GITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSL 151 (373)
Q Consensus 105 ~~~~y~~l~~~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~ 151 (373)
...+..|..++.++|+.++...+...+...+.......-.+--++.+
T Consensus 62 Tg~~l~~~~r~~~~~~~~~~~~~~~~l~ii~~~~~e~~G~a~al~ll 108 (390)
T TIGR01197 62 TGLDLAEVCREHYPKVPRITLWILAELAIIATDMAEVIGTAIALNLL 108 (390)
T ss_pred cCCCHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999887766655544444444445444444444443
No 125
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=44.31 E-value=19 Score=22.42 Aligned_cols=29 Identities=14% Similarity=0.196 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 017309 262 TKALITCFALCVLIYGGVAVMGFLMFGQG 290 (373)
Q Consensus 262 ~~~i~~s~~~~~~~Y~~~g~~gy~~fg~~ 290 (373)
..+...+..+.+++..+.|..-|.+||+.
T Consensus 5 e~A~~~~i~i~~lL~~~TgyaiYtaFGpp 33 (46)
T PRK13183 5 SPALSLAITILAILLALTGFGIYTAFGPP 33 (46)
T ss_pred chhHHHHHHHHHHHHHHhhheeeeccCCc
Confidence 34566667777777777788888899864
No 126
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=43.82 E-value=18 Score=22.22 Aligned_cols=27 Identities=15% Similarity=0.196 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 017309 264 ALITCFALCVLIYGGVAVMGFLMFGQG 290 (373)
Q Consensus 264 ~i~~s~~~~~~~Y~~~g~~gy~~fg~~ 290 (373)
+...+..+.+++-.+.|...|.+||+.
T Consensus 4 a~~~~i~i~~~lv~~Tgy~iYtaFGpp 30 (43)
T PF02468_consen 4 ATVLAIFISCLLVSITGYAIYTAFGPP 30 (43)
T ss_pred eeeHHHHHHHHHHHHHhhhhhheeCCC
Confidence 344566666777777777888889854
No 127
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=43.69 E-value=1.1e+02 Score=24.55 Aligned_cols=97 Identities=12% Similarity=0.220 Sum_probs=61.0
Q ss_pred cccccchhhhhhhHhhhcccceehhhHhhhccC-chhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhcC-CCc
Q 017309 225 VVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMAD-KTKFTKALITCFALCVLIYGGVAVMGFLMFGQGTLSQITLNM-PPH 302 (373)
Q Consensus 225 ~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~-p~~~~~~i~~s~~~~~~~Y~~~g~~gy~~fg~~~~~~il~n~-~~~ 302 (373)
.+||..+....|.+...=+..-.. +..++ .+|..|.++...-...++-.++|+.....+-++. ++ .|+ +-.
T Consensus 6 ~Fn~HP~lm~~G~i~l~geaiL~~----~~~~~~~k~~~k~~H~~L~~la~~~~~~Gl~av~~~h~~~--~~-~hf~SlH 78 (143)
T cd08763 6 QFNVHPLCMVLGLVFLCGEALLVY----RVFRNETKRSTKILHGLLHIMALVISLVGLVAVFDYHQAN--GY-PDMYSLH 78 (143)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHh----ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHcccc--CC-CccccHH
Confidence 667766666655544332222222 22221 2355677999999999999999998777665442 22 333 334
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhchh
Q 017309 303 AFASKVAVWTTVINPFTKYALLMNPL 328 (373)
Q Consensus 303 ~~~~~i~~~~~~i~~~~s~pl~~~~~ 328 (373)
.+...+..+++.++.+..+....+|.
T Consensus 79 swlGl~t~~L~~lQ~~~G~~~f~~P~ 104 (143)
T cd08763 79 SWCGILTFVLYFLQWLIGFSFFLFPG 104 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 56666677778888888888888885
No 128
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=42.26 E-value=3.7e+02 Score=26.99 Aligned_cols=47 Identities=6% Similarity=-0.072 Sum_probs=29.9
Q ss_pred ChHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCC
Q 017309 108 TYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPG 154 (373)
Q Consensus 108 ~y~~l~~~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~ 154 (373)
.+.+..+...+++++.++.+.......+...+.....+..+..+-++
T Consensus 300 p~~~a~~~~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~amarD 346 (557)
T TIGR00906 300 PFPVAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAMARD 346 (557)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34444444444667777777677677777777777777777665443
No 129
>CHL00020 psbN photosystem II protein N
Probab=39.54 E-value=17 Score=22.27 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 017309 264 ALITCFALCVLIYGGVAVMGFLMFGQG 290 (373)
Q Consensus 264 ~i~~s~~~~~~~Y~~~g~~gy~~fg~~ 290 (373)
+...+..+.+++..+.|..-|.+||+.
T Consensus 4 A~~~~i~i~~ll~~~Tgy~iYtaFGpp 30 (43)
T CHL00020 4 ATLVAIFISGLLVSFTGYALYTAFGQP 30 (43)
T ss_pred hhhHHHHHHHHHHHhhheeeeeccCCc
Confidence 455666677777777777778888864
No 130
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=38.86 E-value=1.7e+02 Score=28.68 Aligned_cols=44 Identities=9% Similarity=0.021 Sum_probs=34.5
Q ss_pred hHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcC
Q 017309 109 YPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFP 153 (373)
Q Consensus 109 y~~l~~~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~ 153 (373)
-.+.+++.+|.+. +.+-+...+.++|..-+.+...+.++....+
T Consensus 275 av~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~~ar 318 (479)
T KOG1287|consen 275 AVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFYAGAR 318 (479)
T ss_pred HHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 3567899999998 8888999999999887777777776665443
No 131
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=38.14 E-value=3.9e+02 Score=26.00 Aligned_cols=46 Identities=15% Similarity=0.243 Sum_probs=40.1
Q ss_pred hHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCC
Q 017309 109 YPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPG 154 (373)
Q Consensus 109 y~~l~~~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~ 154 (373)
..+..+..+|+++..++.+...+..+++..++....++.+..+-++
T Consensus 266 ~~~~~~~~~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ard 311 (468)
T TIGR03810 266 MAYVLEHMVGTWGAVLINIGLIISILGAWLSWTLLPAEIPLLMAKD 311 (468)
T ss_pred HHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 6677889999999999999999999999999999999998776544
No 132
>CHL00182 tatC Sec-independent translocase component C; Provisional
Probab=38.12 E-value=2.6e+02 Score=24.82 Aligned_cols=41 Identities=7% Similarity=-0.031 Sum_probs=30.0
Q ss_pred CCchHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHcCCCC
Q 017309 300 PPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGI 340 (373)
Q Consensus 300 ~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~ 340 (373)
...+....-.++...+++..+.|...+-+...+.--..++|
T Consensus 73 ~~~E~f~~~ikls~~~g~~~a~P~i~yqiw~Fi~PgLy~~E 113 (249)
T CHL00182 73 SPGEYFFSSIKISFYTGLLISSPFIIYQIILFILPGLTKKE 113 (249)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHH
Confidence 33456666778899999999999999877666665554444
No 133
>PF13491 DUF4117: Domain of unknown function (DUF4117)
Probab=36.18 E-value=2.4e+02 Score=22.95 Aligned_cols=106 Identities=11% Similarity=0.095 Sum_probs=50.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh-hhhh--c-CCCc---hHHHHHHHHHHHHHHHHhhhhhhchhHHH
Q 017309 259 TKFTKALITCFALCVLIYGGVAVMGFLMFGQGTLS-QITL--N-MPPH---AFASKVAVWTTVINPFTKYALLMNPLARS 331 (373)
Q Consensus 259 ~~~~~~i~~s~~~~~~~Y~~~g~~gy~~fg~~~~~-~il~--n-~~~~---~~~~~i~~~~~~i~~~~s~pl~~~~~~~~ 331 (373)
||.++-+..-......+|+.+++..|- ++.++ +... + -.+| ..-..+...++..--..+|.+......-.
T Consensus 1 ~r~~~~i~~~~l~~~~~fl~~al~sy~---~~D~~~~~~~~~~~~~~N~~G~~Ga~~a~~l~~~fG~~a~~~p~~l~~~~ 77 (171)
T PF13491_consen 1 ERRKREILGIALLLLALFLLLALISYS---PSDPSWNSSGSTDAEVHNLMGILGAYLADFLFQLFGLGAYLLPLLLIVWG 77 (171)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHcC---CCCCcccccccccCCCcCCCChHhHHHHHhHHhccchHHHHHHHHHHHHH
Confidence 456677777777888888888888772 22211 1110 1 1112 12222333333222233333333333333
Q ss_pred HHHHcCCCCCcchhhHHHHHHHHHHHHHHHHHhcCC
Q 017309 332 IEELLPAGISNNYWCFILLRTALVFSSVCAAFLLPF 367 (373)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~ 367 (373)
+.....++.+...++.......++..+.+.+...|.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~ 113 (171)
T PF13491_consen 78 IRLFRRRSLRRRIRRWLGLLLLLLSLSGLLSLLIPS 113 (171)
T ss_pred HHHHHccCchhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 333333333233444455555566666667766663
No 134
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=35.51 E-value=4.6e+02 Score=26.12 Aligned_cols=109 Identities=12% Similarity=-0.079 Sum_probs=52.1
Q ss_pred CCHHHHHHHHHHHHHhHhhhHH----HHHHHhhc----H--------HHHHHHHHHHHHHHHHHHHHHHhh-----hhCC
Q 017309 46 CSFTQTIFNGINVMAGVGLLST----PYTVKEAG----W--------ASLVVLLLFAVVCCYTASLMRYCF-----ESKE 104 (373)
Q Consensus 46 ~s~~~~~~~l~~~~iG~Gil~l----P~~~~~~G----~--------~g~i~~~~~~~~~~~~~~~l~~~~-----~~~~ 104 (373)
-+..+=..+++.+-+|+|++.. |....+.- . .+.-..++-..+..++.+.+.... -++.
T Consensus 88 fs~~SW~aMLFaAGmGigl~fwgvaEp~~~y~~pp~~~~~~t~~A~~~Al~~tffHWG~~~WaiY~lvalalaYf~~rk~ 167 (537)
T COG1292 88 FSTLSWLAMLFAAGMGIGLLFWGVAEPVYYYATPPPGAEPNTTEAAEQALAYTFFHWGLHAWAIYALVALALAYFHYRKG 167 (537)
T ss_pred cchhHHHHHHHHcccCceeeEeechhhHHHhcCCCCCCCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHHhheeeEecC
Confidence 4444448889999999998732 33222111 0 022222222233333333332221 1122
Q ss_pred CCCChHHHHHHhcCcc----hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCC
Q 017309 105 GITTYPDIGEAAFGKY----GRLLISVLLYTELYSYCVEFIILEGDNLTSLFPG 154 (373)
Q Consensus 105 ~~~~y~~l~~~~~G~~----~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~ 154 (373)
.....++.-+-.+|++ .+..+|++-++...+....-+-+...++..-+..
T Consensus 168 ~pl~lss~l~Pllg~~~~G~~G~~IDi~aiiaTl~GiATsLG~ga~qi~~Gl~~ 221 (537)
T COG1292 168 LPLLLSSALYPLLGERIKGPIGHAVDILAIIATLFGIATSLGLGALQLTAGLSY 221 (537)
T ss_pred CCchhhhhhhhhhcccccCccchhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 2223444444444433 3456777766666666666666666666554443
No 135
>KOG2174 consensus Leptin receptor gene-related protein [Signal transduction mechanisms]
Probab=33.51 E-value=1.5e+02 Score=23.01 Aligned_cols=48 Identities=15% Similarity=0.128 Sum_probs=29.2
Q ss_pred HHHHHHHHHhHhhhHHHHHHHhhcHH--HHHHHHHHH-HHHHHHHHHHHHh
Q 017309 52 IFNGINVMAGVGLLSTPYTVKEAGWA--SLVVLLLFA-VVCCYTASLMRYC 99 (373)
Q Consensus 52 ~~~l~~~~iG~Gil~lP~~~~~~G~~--g~i~~~~~~-~~~~~~~~~l~~~ 99 (373)
........+=.|-+++|..++++|.+ |...+...+ .+.+.+..+...+
T Consensus 69 lA~FlTg~~vvs~falPiVl~ha~lI~~gAc~l~~tg~~iIF~~ii~~f~~ 119 (131)
T KOG2174|consen 69 LAKFLTGAIVVSAFALPIVLAHAGLIGWGACALVLTGNSIIFLVIILFFLI 119 (131)
T ss_pred HHHHHhcchhhhhhhhHHHHHHhhHhhhhhhhhhhcCCchhHHHHHHHHHH
Confidence 34444444555667999999999988 544455555 4444444444444
No 136
>PF04144 SCAMP: SCAMP family; InterPro: IPR007273 In vertebrates, secretory carrier membrane proteins (SCAMPs) 1-3 constitute a family of putative membrane-trafficking proteins composed of cytoplasmic N-terminal sequences with NPF repeats, four central transmembrane regions (TMRs), and a cytoplasmic tail. SCAMPs probably function in endocytosis by recruiting EH-domain proteins to the N-terminal NPF repeats but may have additional functions mediated by their other sequences [].; GO: 0015031 protein transport, 0016021 integral to membrane
Probab=32.87 E-value=2.9e+02 Score=22.98 Aligned_cols=54 Identities=11% Similarity=0.092 Sum_probs=32.5
Q ss_pred HhhhhhhchhHHHHHHHcCCCCCcchhhHHHHHHHHHHHHHHHHHhcCCcccCC
Q 017309 319 TKYALLMNPLARSIEELLPAGISNNYWCFILLRTALVFSSVCAAFLLPFFSKFG 372 (373)
Q Consensus 319 ~s~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~vg 372 (373)
...|....-..+-+.+.+.+++..+.......-..-++.+...|+-+|..|..|
T Consensus 77 ~~~P~sf~~wyrplY~A~r~dss~~f~~ff~~~~~~i~f~i~~aIG~p~~G~~G 130 (177)
T PF04144_consen 77 LGTPASFFCWYRPLYKAFRTDSSFRFMWFFFFFFVHIIFCIIMAIGIPGWGSCG 130 (177)
T ss_pred HHhHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 334555444444444444455445555555666666888888899888766543
No 137
>PF04133 Vps55: Vacuolar protein sorting 55 ; InterPro: IPR007262 Vps55 is involved in the secretion of the Golgi form of the soluble vacuolar carboxypeptidase Y, but not the trafficking of the membrane-bound vacuolar alkaline phosphatase. Both Vps55 and obesity receptor gene-related protein are important for functioning membrane trafficking to the vacuole/lysosome of eukaryotic cells [].
Probab=32.85 E-value=2.3e+02 Score=21.92 Aligned_cols=46 Identities=17% Similarity=0.046 Sum_probs=28.9
Q ss_pred HHHHHHHHHhHhhhHHHHHHHhhcHH--HHHHHHHHHHHHHHHHHHHH
Q 017309 52 IFNGINVMAGVGLLSTPYTVKEAGWA--SLVVLLLFAVVCCYTASLMR 97 (373)
Q Consensus 52 ~~~l~~~~iG~Gil~lP~~~~~~G~~--g~i~~~~~~~~~~~~~~~l~ 97 (373)
.....+..+=.+-+++|-.++++|.+ |...+.+.+-+..|...+..
T Consensus 63 ~~~FlT~~~vvSg~aLP~VL~H~~~I~~~A~~l~l~g~~ii~~ti~~f 110 (120)
T PF04133_consen 63 FGKFLTGFLVVSGFALPIVLAHAGIIQWGACGLSLAGGVIIYATIIGF 110 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHH
Confidence 33334444444556899999999987 65566666655555444433
No 138
>PF15225 IL32: Interleukin 32
Probab=32.46 E-value=54 Score=23.52 Aligned_cols=27 Identities=15% Similarity=0.247 Sum_probs=18.7
Q ss_pred CCHHHHHHHHHHHHHhHhhhHHHHHHH
Q 017309 46 CSFTQTIFNGINVMAGVGLLSTPYTVK 72 (373)
Q Consensus 46 ~s~~~~~~~l~~~~iG~Gil~lP~~~~ 72 (373)
..+++.+.--++-++.+|+-+|-.+..
T Consensus 55 Q~ww~~vlAWVkk~va~~~~ALv~av~ 81 (104)
T PF15225_consen 55 QTWWQAVLAWVKKMVAAGMQALVSAVQ 81 (104)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 566777777777777777766655543
No 139
>PF00902 TatC: Sec-independent protein translocase protein (TatC); InterPro: IPR002033 Proteins encoded by the mttABC operon (formerly yigTUW), mediate a novel Sec-independent membrane targeting and translocation system in Escherichia coli that interacts with cofactor-containing redox proteins having a S/TRRXFLK "twin arginine" leader motif. This family contains the E. coli mttB gene (TATC) []. A functional Tat system or Delta pH-dependent pathway requires three integral membrane proteins: TatA/Tha4, TatB/Hcf106 and TatC/cpTatC. The TatC protein is essential for the function of both pathways. It might be involved in twin-arginine signal peptide recognition, protein translocation and proton translocation. Sequence analysis predicts that TatC contains six transmembrane helices (TMHs), and experimental data confirmed that N and C termini of TatC or cpTatC are exposed to the cytoplasmic or stromal face of the membrane. The cytoplasmic N terminus and the first cytoplasmic loop region of the E. coli TatC protein are essential for protein export. At least two TatC molecules co-exist within each Tat translocon [, ].
Probab=29.12 E-value=2.8e+02 Score=23.77 Aligned_cols=65 Identities=12% Similarity=0.090 Sum_probs=41.8
Q ss_pred CCchHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHcCCCCCcchhhHHHHHHHHHHHHHHHHHh
Q 017309 300 PPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNYWCFILLRTALVFSSVCAAFL 364 (373)
Q Consensus 300 ~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~ 364 (373)
+..+....-.+....+++..+.|..++-....+.--+.++|++...+.......+.......+..
T Consensus 56 ~~~e~f~~~lk~s~~~~~~~~~P~~~yq~w~Fi~PgL~~~Er~~~~~~~~~~~~lf~~g~~f~y~ 120 (215)
T PF00902_consen 56 SPTEAFFTYLKLSFFLGLIISLPYILYQIWAFIAPGLYKHERRFFKKFVLISFILFLLGVAFAYF 120 (215)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666788889999999999999888777766555554332333344444444444444444
No 140
>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.91 E-value=5.6e+02 Score=25.05 Aligned_cols=63 Identities=10% Similarity=0.014 Sum_probs=29.0
Q ss_pred CccccccchhhhhhhHhhhcccceehhhHhhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 017309 223 GQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVAVMGFL 285 (373)
Q Consensus 223 ~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~i~~s~~~~~~~Y~~~g~~gy~ 285 (373)
...+.|..++.+-++.+|-|....--.-....|..--+-.--.-...+++..+.+..|.+||.
T Consensus 515 DyrW~WtSfls~~ST~~yvy~Ys~yYy~~ktkMsG~fQTsfyFGYm~~f~~~lgim~Gtigy~ 577 (593)
T KOG1277|consen 515 DYRWWWTSFLSAGSTALYVYLYSFYYYFFKTKMSGLFQTSFYFGYMAVFCYALGLMCGTIGYV 577 (593)
T ss_pred cceeeeeeeeccccceeehhhhHHHHHhhhccccchhhhhhhhHHHHHHHHHHHHHHhhHhhh
Confidence 334555666665555554443322222222233221121222234445566666666666664
No 141
>PF08627 CRT-like: CRT-like; InterPro: IPR013936 This region is found in proteins related to Plasmodium falciparum chloroquine resistance transporter (CRT).
Probab=28.25 E-value=40 Score=26.16 Aligned_cols=12 Identities=42% Similarity=0.645 Sum_probs=9.3
Q ss_pred CCCCCCCCcchh
Q 017309 2 DAKYPFLSEYEK 13 (373)
Q Consensus 2 ~~~~p~~~~~~~ 13 (373)
||++|+|++..+
T Consensus 1 ~e~~pll~~~~~ 12 (130)
T PF08627_consen 1 DEKQPLLSSINN 12 (130)
T ss_pred CCcccccccccC
Confidence 799999986543
No 142
>PRK05415 hypothetical protein; Provisional
Probab=26.50 E-value=4.3e+02 Score=24.71 Aligned_cols=47 Identities=9% Similarity=0.043 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhHhhhHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHH
Q 017309 51 TIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMR 97 (373)
Q Consensus 51 ~~~~l~~~~iG~Gil~lP~~~~~~G~~g~i~~~~~~~~~~~~~~~l~ 97 (373)
+...+....+|.++..+=..+.+.-|+|.....+.+++.......+.
T Consensus 73 ~l~~l~~~~~~~~~~~i~~~~~~~~wlg~~~~~~~~~~~~~~~~~~~ 119 (341)
T PRK05415 73 GLGLLGSLVVGQAVQWLRDAFQRSDWLGLGAAVVGALIVLAGLGIVV 119 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666666677778899999866655555555554444443
No 143
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=25.34 E-value=6.1e+02 Score=24.35 Aligned_cols=47 Identities=13% Similarity=0.180 Sum_probs=33.7
Q ss_pred CCChHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 017309 106 ITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLF 152 (373)
Q Consensus 106 ~~~y~~l~~~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~ 152 (373)
...+.+..+..+|++++.++.+...+...+....+....++.+..+-
T Consensus 259 ~~p~~~~~~~~~g~~~~~~v~~~~~~s~~~~~~~~~~~~sr~~~a~a 305 (445)
T PRK10644 259 ASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAA 305 (445)
T ss_pred CChHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577888899999988888777777777666666666666655443
No 144
>PRK11021 putative transporter; Provisional
Probab=25.15 E-value=5.9e+02 Score=24.10 Aligned_cols=48 Identities=19% Similarity=0.169 Sum_probs=35.8
Q ss_pred CChHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCC
Q 017309 107 TTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPG 154 (373)
Q Consensus 107 ~~y~~l~~~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~ 154 (373)
....+..++.+|+++..++.+...+..++...++....++.+..+-++
T Consensus 246 ~~~~~~~~~~~G~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ard 293 (410)
T PRK11021 246 ASLPGIFVQLFGGYALWVICVIGYLACFASVNIYTQSFARLVWSQARE 293 (410)
T ss_pred ccHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 455677788899998888877777777777777777777777766543
No 145
>KOG2736 consensus Presenilin [Signal transduction mechanisms]
Probab=24.77 E-value=2.8e+02 Score=26.12 Aligned_cols=52 Identities=13% Similarity=0.219 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhHhhhHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHh
Q 017309 48 FTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYC 99 (373)
Q Consensus 48 ~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~g~i~~~~~~~~~~~~~~~l~~~ 99 (373)
|.......+.-.+|-++--+=.+..+--..++-+-+.+|.+.+++.+.+++-
T Consensus 343 ~~TviAC~vaIL~GL~~TL~llsv~~kALPALPisI~~G~iFYF~t~~l~ep 394 (406)
T KOG2736|consen 343 LNTVIACFVAILIGLCLTLLLLSVFKKALPALPISITFGLIFYFSTRLLVEP 394 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCchHHHHHHHHHHHHHHHHHH
Confidence 5556666667777777633333444444444445556677777777777653
No 146
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=24.76 E-value=4.1e+02 Score=22.06 Aligned_cols=60 Identities=17% Similarity=0.340 Sum_probs=32.5
Q ss_pred HHHhHhhhHHHHHHH--hhcHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcCcchhhHHHHHHH
Q 017309 58 VMAGVGLLSTPYTVK--EAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLLISVLLY 130 (373)
Q Consensus 58 ~~iG~Gil~lP~~~~--~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~i~~~ 130 (373)
+-+|.+.+..|++.. +-++. -.+.++..++++...+.+. .-+-++.-|.|.+.+..+..+
T Consensus 47 T~v~P~~ll~Pf~~g~wk~t~~G~~igi~~~gv~Si~aAllY-------------~~~l~k~~g~W~Gi~YG~~~W 109 (173)
T PF11085_consen 47 TEVGPNFLLEPFALGDWKNTWLGNLIGIVFIGVFSIVAALLY-------------YALLKKFKGPWPGILYGLAWW 109 (173)
T ss_pred cccccChhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHhcccchHHHHHHHHH
Confidence 457888899999763 23333 2222333444444433333 233456667887777665443
No 147
>PRK10921 twin-arginine protein translocation system subunit TatC; Provisional
Probab=23.84 E-value=5.2e+02 Score=23.02 Aligned_cols=63 Identities=8% Similarity=-0.021 Sum_probs=37.7
Q ss_pred CchHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHcCCCCCcchhhHHHHHHHHHHHHHHHHH
Q 017309 301 PHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNYWCFILLRTALVFSSVCAAF 363 (373)
Q Consensus 301 ~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~ 363 (373)
..+....-.++...+.+.++.|..++-....+.--..++|++...+.......+.......+.
T Consensus 64 ~~e~f~~~lk~sl~~g~~la~P~ilyqiw~Fi~PgLy~~Err~~~~~~~~s~~LF~~G~~f~y 126 (258)
T PRK10921 64 VASPFFTPIKLTFMVSLILSAPVILYQVWAFIAPALYKHERRLVVPLLVSSSLLFYIGMAFAY 126 (258)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667888999999999999987766666545444422222333344444444444443
No 148
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=23.46 E-value=6.2e+02 Score=25.07 Aligned_cols=157 Identities=13% Similarity=0.176 Sum_probs=83.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHH-HHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccC-CchhhHHHHH
Q 017309 119 KYGRLLISVLLYTELYSYCVEFI-ILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRD-LRVISYLSAT 196 (373)
Q Consensus 119 ~~~~~~~~i~~~~~~~g~~~~y~-i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~-l~~l~~~s~~ 196 (373)
|-+.+++.+...+.+.+..++-- +..|.-+..++|.+. +..+-.....+...++.|=-++++ -+.+..++..
T Consensus 341 RAgvFfi~~~f~laql~~NISan~vaagnDl~~L~Pkyi------nIrRG~~~~a~ia~a~~PWnll~SSs~F~t~Lssy 414 (572)
T KOG2466|consen 341 RAGVFFIGFGFALAQLGTNISANSVAAGNDLSALLPKYI------NIRRGALICAIIAWAICPWNLLSSSSKFLTALSSY 414 (572)
T ss_pred chhhhHHHHHHHHHHHhcchhccccccchhhHhhCcceE------EecccHHHHHHHHHHhCchHHhccccHHHHHHHHH
Confidence 45677788888888877765543 334445556666542 222333445556777888666655 3444455555
Q ss_pred HHHHHHHHHHhhh-eeccccC-ccc-----CCCCccccccchhhhhhhHhhhcccceehhhHhhhccCchh--------h
Q 017309 197 GVVATILIVLCVL-FLGTIEG-IGF-----HPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTK--------F 261 (373)
Q Consensus 197 ~~~~~~~~~~~i~-~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~--------~ 261 (373)
+++..-+..+.+. ++...++ .+. .++....-++.=..-=....|-.++.+++|-+..|..+..+ +
T Consensus 415 svfLspiagViiaDyF~iRk~~~~i~~~y~~~~g~yY~~~~G~NwRA~vA~vcG~~P~lpG~a~~V~~~~~v~~G~~~~y 494 (572)
T KOG2466|consen 415 SVFLSPIAGVIIADYFLIRKGYYKITHLYSLSKGSYYYFKKGINWRAFVAYVCGMAPNLPGFAGSVGADIKVPDGAVKLY 494 (572)
T ss_pred HHHHhhccceEeehhheeecceeeeeeeeecCCCceeeeecCccHHHHHHHHhccccCCcchhhhcCcccccccceEEEE
Confidence 4433322221111 1111111 111 11111111111122334567778889999999888774322 2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 017309 262 TKALITCFALCVLIYGGVAV 281 (373)
Q Consensus 262 ~~~i~~s~~~~~~~Y~~~g~ 281 (373)
......++.+.++.|..+..
T Consensus 495 y~~yf~sf~isf~vYwiLc~ 514 (572)
T KOG2466|consen 495 YLDYFFSFLISFLVYWILCL 514 (572)
T ss_pred echHHHHHHHHHHHHHHHHh
Confidence 34667888888888887654
No 149
>PF09716 ETRAMP: Malarial early transcribed membrane protein (ETRAMP); InterPro: IPR006389 These sequences represent a family of proteins from the malaria parasite Plasmodium falciparum, several of which have been shown to be expressed specifically in the ring stage as well as the rodent parasite Plasmodium yoelii []. A homologue from Plasmodium chabaudi was localized to the parasitophorous vacuole membrane []. Members have an initial hydrophobic, Phe/Tyr-rich stretch long enough to span the membrane, a highly charged region rich in Lys, a second putative transmembrane region, and a second highly charged, low complexity sequence region. Some members have up to 100 residues of additional C-terminal sequence. These genes have been shown to be found in the sub-telomeric regions of both Plasmodium falciparum and P. yoelii chromosomes.
Probab=22.34 E-value=1.1e+02 Score=21.96 Aligned_cols=40 Identities=18% Similarity=0.183 Sum_probs=25.9
Q ss_pred hHhhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 017309 250 NIYQSMADKTKFTKALITCFALCVLIYGGVAVMGFLMFGQ 289 (373)
Q Consensus 250 ~i~~~m~~p~~~~~~i~~s~~~~~~~Y~~~g~~gy~~fg~ 289 (373)
.+.++++++.+.+|.+.+|.+.+++.-++-+.+|+..|..
T Consensus 41 ~~d~~i~kK~k~kK~iiiS~i~s~lalli~~~~G~g~y~~ 80 (84)
T PF09716_consen 41 KIDDKIEKKKKNKKKIIISTIASGLALLIATALGYGYYKK 80 (84)
T ss_pred hhhHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445666665566666666666666557777778877753
No 150
>PF12666 PrgI: PrgI family protein; InterPro: IPR024414 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 116 and 146 amino acids in length. PrgI is found encoded on plasmids of Enterococcus faecalis, its function is not known.
Probab=21.94 E-value=3.1e+02 Score=19.73 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHHHHHHHhHhhhHHHHH
Q 017309 44 HGCSFTQTIFNGINVMAGVGLLSTPYT 70 (373)
Q Consensus 44 ~~~s~~~~~~~l~~~~iG~Gil~lP~~ 70 (373)
.+.|+.|..+......+|.|+..+-+.
T Consensus 15 ~GlT~RQl~~l~~~~~~~~~~~~~~~~ 41 (93)
T PF12666_consen 15 FGLTLRQLICLAIGALVGVGVYLLLWF 41 (93)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457999999999999999887654433
No 151
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=21.83 E-value=3.7e+02 Score=20.53 Aligned_cols=67 Identities=16% Similarity=0.023 Sum_probs=37.4
Q ss_pred CCCCHHHHHHHHHHHHHhHhhhHHHHHHHhhcHH-H-HHHHHHHHHHHHHHHHHHHHhhhhCCCCCChH
Q 017309 44 HGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-S-LVVLLLFAVVCCYTASLMRYCFESKEGITTYP 110 (373)
Q Consensus 44 ~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g-~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~ 110 (373)
++.|.-+......-+...--++++|.+..-.+|. . ..+++...+.-.++...+.+..+-+|...=|.
T Consensus 16 rGlT~~El~~~~~~~~~~gl~~g~~l~~~~~~w~~~p~~~lig~~l~v~~gg~~l~rlKRGrPe~yl~r 84 (111)
T TIGR03750 16 RGLTADELGVAAGVGLAAGLVLGLLLALLAGPWALIPTGALLGPILVVLIGGKLLARLKRGKPEGYLYR 84 (111)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCCchHHHH
Confidence 3455445444443333333456788776666776 4 33344455556667888888866555543333
No 152
>PF03857 Colicin_im: Colicin immunity protein; InterPro: IPR005557 Colicin immunity proteins are plasmid encoded proteins necessary for protecting the cell against colicins. Colicins are toxins released by bacteria during times of stress [].; GO: 0015643 toxin binding, 0030153 bacteriocin immunity
Probab=21.74 E-value=4.1e+02 Score=21.08 Aligned_cols=75 Identities=13% Similarity=0.041 Sum_probs=39.1
Q ss_pred hccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhh-hhhcCCCchHHHHHHHHH-HHHHHHHhhhhhhchhH
Q 017309 254 SMADKTKFTKALITCFALCVLIYGGVAVMGFLMFGQGTLSQ-ITLNMPPHAFASKVAVWT-TVINPFTKYALLMNPLA 329 (373)
Q Consensus 254 ~m~~p~~~~~~i~~s~~~~~~~Y~~~g~~gy~~fg~~~~~~-il~n~~~~~~~~~i~~~~-~~i~~~~s~pl~~~~~~ 329 (373)
|+++|.. ++.+..+....-++|..+-.+-++.=-+-+.++ .+.....++....+--.+ +......+|-+.+.|.+
T Consensus 53 ~l~k~~~-r~~vl~~~~~~~i~y~~~iYi~~f~N~ELTtsgr~~r~iS~n~~tl~~~Yi~iy~~if~~t~~~lfiP~~ 129 (138)
T PF03857_consen 53 ELKKKHN-RLLVLRSCFLFPIFYIIMIYILLFYNFELTTSGRTLRLISANEFTLFLFYIAIYSSIFFITYFTLFIPVL 129 (138)
T ss_pred eecCCCC-hhHHHHHHHHHHHHHHHHHHHHHHhccccccCCceeEEeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455544 556677777788888865544333322333333 333445555533322222 22333677777777764
No 153
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=21.64 E-value=1.8e+02 Score=18.86 Aligned_cols=26 Identities=4% Similarity=0.037 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCch
Q 017309 267 TCFALCVLIYGGVAVMGFLMFGQGTL 292 (373)
Q Consensus 267 ~s~~~~~~~Y~~~g~~gy~~fg~~~~ 292 (373)
.-.++..++|+++|+.-+..+.+++.
T Consensus 27 ik~vismimylilGi~L~yis~~~~~ 52 (54)
T PF04835_consen 27 IKSVISMIMYLILGIALIYISSNDDK 52 (54)
T ss_pred HHHHHHHHHHHHHHHHHhhhccCccc
Confidence 34567788999999977776665543
No 154
>TIGR00945 tatC Twin arginine targeting (Tat) protein translocase TatC. This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR01912) represents the archaeal clade of this family. TatC is often found in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409).
Probab=21.42 E-value=5.3e+02 Score=22.16 Aligned_cols=63 Identities=10% Similarity=-0.011 Sum_probs=38.1
Q ss_pred CCchHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHcCCCCCcchhhHHHHHHHHHHHHHHHH
Q 017309 300 PPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNYWCFILLRTALVFSSVCAA 362 (373)
Q Consensus 300 ~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA 362 (373)
...+....-.+....+....++|...+-....+.--..++|++...+.......+.......+
T Consensus 52 ~~~e~f~~~lk~s~~~g~~~~~P~i~yqiw~Fi~PgLy~~Er~~~~~~~~~~~~lF~~G~~f~ 114 (215)
T TIGR00945 52 SPTEPFFTYIKLSLIVGIILSSPVILYQIWAFILPGLYEHERRLLLPLLLGSILLFLAGLAFA 114 (215)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666667888899999999999998776666655544442222233333333333333333
No 155
>PF01616 Orbi_NS3: Orbivirus NS3; InterPro: IPR002565 This is a family of Orbivirus non structural protein of unknown function, but which may play a role in release of the virus from infected cells [].
Probab=21.03 E-value=3e+02 Score=23.33 Aligned_cols=77 Identities=10% Similarity=0.155 Sum_probs=46.6
Q ss_pred cccceehhhHhhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhcCCCchHHHHHHHHHHHHHHHHhh
Q 017309 242 YSGHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVAVMGFLMFGQGTLSQITLNMPPHAFASKVAVWTTVINPFTKY 321 (373)
Q Consensus 242 f~~~~~~~~i~~~m~~p~~~~~~i~~s~~~~~~~Y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~i~~~~~~i~~~~s~ 321 (373)
+..+..++.+.+|+++.+|.+..+++...++.++-+...++....= ....+-.++..+.. +...+=+++++++.
T Consensus 70 ~vne~~L~~L~~el~~~kRk~~il~~~~li~a~v~l~ts~~~~~~~---~~~~~~~~l~~~~~---~~~~~~~inL~~T~ 143 (195)
T PF01616_consen 70 HVNEQILPKLKHELRKLKRKRRILHIVELIAAIVALLTSVVMAISD---MSPELKSNLKEKNW---ISITLHVINLIATT 143 (195)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHhhhhhh---HHHHHHHHHHHHHH
Confidence 4466788888999888888788888888888777777766555442 22222223332222 23333445666665
Q ss_pred hhh
Q 017309 322 ALL 324 (373)
Q Consensus 322 pl~ 324 (373)
.+.
T Consensus 144 ~~~ 146 (195)
T PF01616_consen 144 AMM 146 (195)
T ss_pred HHH
Confidence 544
No 156
>PRK10655 potE putrescine transporter; Provisional
Probab=20.88 E-value=7.4e+02 Score=23.67 Aligned_cols=47 Identities=6% Similarity=-0.034 Sum_probs=36.2
Q ss_pred CChHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcC
Q 017309 107 TTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFP 153 (373)
Q Consensus 107 ~~y~~l~~~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~ 153 (373)
....+..++.+|++++.++.+...+..++...++....++.+...-+
T Consensus 258 ~p~~~~~~~~~g~~~~~~~~~~~~is~~~~~~~~~~~~sR~~~~~a~ 304 (438)
T PRK10655 258 APFGLAFAQMFNPTVGKIVMALMVMSCCGSLLGWQFTIAQVFKSSAD 304 (438)
T ss_pred chHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34667778899999888888888888888888887777777665543
No 157
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=20.60 E-value=7.3e+02 Score=23.46 Aligned_cols=46 Identities=15% Similarity=0.225 Sum_probs=40.0
Q ss_pred hHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCC
Q 017309 109 YPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPG 154 (373)
Q Consensus 109 y~~l~~~~~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~ 154 (373)
...+.++..|+++.+++.+...+..++...+.....++.+..+-++
T Consensus 260 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~d 305 (426)
T PF13520_consen 260 FAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMARD 305 (426)
T ss_dssp HHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchhhccccccccccccccccccccccccchhhcchhhcccccccc
Confidence 5677888888999999999999999999999999999888877654
Done!